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<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L014</accession>
    <name>A0A1M5L014_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0025</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58452.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898350.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG58452">
        <property type="protein sequence ID" value="SHG58452"/>
        <property type="gene ID" value="SAMN05444003_0025"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021994">
        <property type="entry name" value="DUF3592"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12158">
        <property type="entry name" value="DUF3592"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="133"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG58452.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="249" mass="27761" checksum="C17F31930FD2981B" modified="2017-03-15" version="1">MAPAQHSRTKPRSWFSIFFAAGGWIAVISALILIGLTVASVSQYHSAVIFERDGLTVEAEVIDKRIHRTTDDTDYYVTLAYMVDGTTYRREHDVGSGFYHDVAVGGSTPVRYLPSNPSVVEHYPGERQDSATTMQWVAGAMGLFALFNLWITGRRANSAVLARRYGYSSTAKVYEIIERRSKGRPTGNGYMVFRTTDGPPQMTLDGKVDLFLEIGEGAEIDVFVRGKTAWWEGDTGPRPERRNTIPKVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L092</accession>
    <name>A0A1M5L092_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phytanoyl-CoA dioxygenase (PhyH)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0028</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58522.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0028"/>
    <dbReference type="EnsemblBacteria" id="SHG58522">
        <property type="protein sequence ID" value="SHG58522"/>
        <property type="gene ID" value="SAMN05444003_0028"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008775">
        <property type="entry name" value="Phytyl_CoA_dOase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05721">
        <property type="entry name" value="PhyH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG58522.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="290" mass="32036" checksum="BD143EC886A92FE2" modified="2017-03-15" version="1">MSNLGHVTAEQAASYREHGYLYPIRAMTEDEAADFRARVEALEAEWLDNGLPLPLNTYKRVNAQIVMPVAHELGCHEGILNAVEGVLGPDIMLYSVEFLIKEPNTKAVVTMHQDLTYWGMGEIDGLTTAWLALSPATKTSGCMDVVSGSHKNPILPHEDTFDGNNLLSRGQEIRVDVAEEDKVSMELRSGEISFHHGLTIHGSGPNSSDDRRIGVAIRYLIPEIAKSGGERDFAHLARGRDDHGLWAPYRVPQVAFEPDALKQYDAVRQLQTQVMMKGAKEDSAIYEKAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L3F9</accession>
    <name>A0A1M5L3F9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0048</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0048"/>
    <dbReference type="EnsemblBacteria" id="SHG58953">
        <property type="protein sequence ID" value="SHG58953"/>
        <property type="gene ID" value="SAMN05444003_0048"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011250">
        <property type="entry name" value="OMP/PagP_b-brl"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56925">
        <property type="entry name" value="SSF56925"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG58953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="337" mass="35635" checksum="B8337A8209289455" modified="2017-03-15" version="1">MTRFLTAVSVVALLAACDNEQPLVFPDDGTETNLENEGTVTDGDGEPILDEEGEEIEFADNGIPEPIAFNLVSADFDAGDETLTVTITSLDSTPLEAVYERNTALDVDGYVAFSQQEDALDRFFVGYGQSSNDGNTTGVLVMDGGQFTRFIAGVYYTQNNYTPHVSSQPDNGLVAYTGRYIGILNFDELDDSQLLTASSGIPANLLAGQPARVLGDVLINADFVDMQVNGGIANRRVASATALDPFTLFDIGLVPADILENGTFFGEANRPDASAVGSYGGTFGGNEASGVAMGVHLTGDFIPEIDNEEEFGLIVLTKCGLAGDGPFCDDAQPDFDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L4P4</accession>
    <name>A0A1M5L4P4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phasin protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0071</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59393.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898408.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0071"/>
    <dbReference type="EnsemblBacteria" id="SHG59393">
        <property type="protein sequence ID" value="SHG59393"/>
        <property type="gene ID" value="SAMN05444003_0071"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG59393.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="149" mass="15553" checksum="1126E3C0BD84FFBD" modified="2017-03-15" version="1">MAKTQDFTAAFKDIMGAFPIDTKAMEQSFKSQATLAEKMSAVNIEAAQKSTELSAKWANDTYSKLSTLTSAKADPADYAKSVTDFASASAEAAAEHMAAFAEIAKKVQTQTVELMMAAGKEASEEVQAAAKKATAEVTAAAKKATAAAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L6J1</accession>
    <name>A0A1M5L6J1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transglycosylase SLT domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0131</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the virb1 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60637.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898490.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0131"/>
    <dbReference type="EnsemblBacteria" id="SHG60637">
        <property type="protein sequence ID" value="SHG60637"/>
        <property type="gene ID" value="SAMN05444003_0131"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023346">
        <property type="entry name" value="Lysozyme-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008258">
        <property type="entry name" value="Transglycosylase_SLT_dom_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01464">
        <property type="entry name" value="SLT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53955">
        <property type="entry name" value="SSF53955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SLT" evidence="2">
        <location>
            <begin position="50"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG60637.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="161" mass="18250" checksum="65D9441B869248C9" modified="2017-03-15" version="1">MHRRLFVCSIAALAACGRRDAPQEARVAVVQVSRDTIPLHPNETPELRALINKYADIHDIPVTLLHRVIIRESTHRPWARNGPYWGLMQILPATARSMGHDGPPEELLDAETNLKYAGKYLRGAWLLSDGSEETAVMWYARGFYFEAKRRGMLVETGLRSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LF93</accession>
    <name>A0A1M5LF93_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Cytochrome c peroxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0256</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63610.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900348.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0256"/>
    <dbReference type="EnsemblBacteria" id="SHG63610">
        <property type="protein sequence ID" value="SHG63610"/>
        <property type="gene ID" value="SAMN05444003_0256"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004601">
        <property type="term" value="F:peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004852">
        <property type="entry name" value="Di-haem_cyt_c_peroxidsae"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03150">
        <property type="entry name" value="CCP_MauG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0349">Heme</keyword>
    <keyword evidence="3 4" id="KW-0408">Iron</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cytochrome c" evidence="6">
        <location>
            <begin position="242"/>
            <end position="406"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="409"/>
            <end position="428"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG63610.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="428" mass="46717" checksum="CF421780776EFE48" modified="2017-03-15" version="1">MHTACVLLFASTAQAQISAEDYIDVDPAQARLGQLLFYDKILSGNLNISCGTCHHHDHAGGDGLSLGIGEGGVGVGPDRTPGMGADRIRKRIPRNAPALWNLGHRDINVLFHDGRLTESDLYGNGFDSPAEEWLPKGLDNLLAAQSLFPMTAQFEMAGNPGENEVTGAVHDRIDNGWPIIAKRVRVIPEYGSMFVEAFDHIEEPSEVTIVEIGNALGAFIASEWQSYDSPYDAWLTGTPLPDDADRGRKLFYNSARCASCHAGDLFTDQAFHALGLPAFGPGRTRRWDQISRDVGRMAETDALEDAYKFRTPSLRNVALTGPYGHNGAYATLEAMIRHHADPVAARESWTPADAQLPEVPWLAKVDFAIQQDTREIARQEATIEKRPIDLSEKDIADLVAFLNALTGETADDRPLGRPETVPSGLPVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LH98</accession>
    <name>A0A1M5LH98_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 13">Replicative DNA helicase</fullName>
            <ecNumber evidence="4 13">3.6.4.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">SAMN05444003_0293</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 13">Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.12"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="3 13">Belongs to the helicase family. DnaB subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.12" evidence="4 13"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64512.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898723.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0293"/>
    <dbReference type="EnsemblBacteria" id="SHG64512">
        <property type="protein sequence ID" value="SHG64512"/>
        <property type="gene ID" value="SAMN05444003_0293"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990077">
        <property type="term" value="C:primosome complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006269">
        <property type="term" value="P:DNA replication, synthesis of RNA primer"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00984">
        <property type="entry name" value="DnaB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.860.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036185">
        <property type="entry name" value="DNA_heli_DnaB-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007692">
        <property type="entry name" value="DNA_helicase_DnaB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007694">
        <property type="entry name" value="DNA_helicase_DnaB-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007693">
        <property type="entry name" value="DNA_helicase_DnaB-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016136">
        <property type="entry name" value="DNA_helicase_N/primase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00772">
        <property type="entry name" value="DnaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03796">
        <property type="entry name" value="DnaB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48024">
        <property type="entry name" value="SSF48024"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00665">
        <property type="entry name" value="DnaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51199">
        <property type="entry name" value="SF4_HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11 13" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7 13" id="KW-0235">DNA replication</keyword>
    <keyword evidence="12 13" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="10 13 15" id="KW-0347">Helicase</keyword>
    <keyword evidence="9 13" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8 13" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 13" id="KW-0639">Primosome</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SF4 helicase" evidence="14">
        <location>
            <begin position="192"/>
            <end position="489"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001665"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008428"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00021957"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU362085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS51199"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="SHG64512.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="497" mass="54626" checksum="41BA5555D58DC634" modified="2017-03-15" version="1">MNEITQFNATGIEAAEGETLPHSVEAEQQLLGAILTNNDIFDRVASIVGPQHFFDPVHARIFETAANRIAKNALASPVTLKTFLEDDEGLKELGGPAYLARLAGAAISAFAARDYAQMIYDLAIRRELIQVGQTIAEKASRVAVDSEPKEQIVEAEQELYRLAEQGSSDSGFQSFLKAVTDAVNVANAAYQRDGQLSGVSTGLTDMDRKLGGLHKSDLLILAGRPSMGKTSLATNIAFNIAKAYKKGILPDGSEGAVDGGVVGFYSLEMSAEQLAARILSEASEVPSEQIRRGDMTEAEFRRFVEAAKALEACPLFIDDTPALPISQLAARARRLKRTHGLDVLMVDYLQLVRGAGRSENRVNEISEITMGLKAIAKELNIPVIALSQLSRQVEARDDKRPQLSDLRESGSIEQDADVVMFVFREEYYAEREKPGDHEMEKMAEWQEKMERLHGKAEVIIGKQRHGPIGTVELSFEGRFTRFGNLVKPWQQGSDQEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LQM7</accession>
    <name>A0A1M5LQM7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0419</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67200.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG67200">
        <property type="protein sequence ID" value="SHG67200"/>
        <property type="gene ID" value="SAMN05444003_0419"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG67200.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="49" mass="5282" checksum="8DFD6505A4B00D8A" modified="2017-03-15" version="1">MTLFETQDHARHEGRGIAPALGAGRVRSGSQAIRLVLLDACHVTKEALQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LR08</accession>
    <name>A0A1M5LR08_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Hydrogenobyrinate a,c-diamide synthase</fullName>
            <ecNumber evidence="4">6.3.5.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Hydrogenobyrinic acid a,c-diamide synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">cobB</name>
        <name evidence="7" type="ORF">SAMN05444003_0425</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L-glutamine or ammonia as the nitrogen source.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>2 ATP + 2 H2O + hydrogenobyrinate + 2 L-glutamine = 2 ADP + 2 H(+) + hydrogenobyrinate a,c-diamide + 2 L-glutamate + 2 phosphate</text>
            <dbReference type="Rhea" id="RHEA:12544"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:77873"/>
            <dbReference type="ChEBI" id="CHEBI:77874"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.5.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 4">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="4">Cofactor biosynthesis; adenosylcobalamin biosynthesis; cob(II)yrinate a,c-diamide from precorrin-2 (aerobic route): step 9/10.</text>
    </comment>
    <comment type="domain">
        <text evidence="4">Comprises of two domains. The C-terminal domain contains the binding site for glutamine and catalyzes the hydrolysis of this substrate to glutamate and ammonia. The N-terminal domain is anticipated to bind ATP and hydrogenobyrinate and catalyzes the ultimate synthesis of the diamide product. The ammonia produced via the glutaminase domain is probably translocated to the adjacent domain via a molecular tunnel, where it reacts with an activated intermediate.</text>
    </comment>
    <comment type="miscellaneous">
        <text evidence="4">The a and c carboxylates of hydrogenobyrinate are activated for nucleophilic attack via formation of a phosphorylated intermediate by ATP. CobB catalyzes first the amidation of the c-carboxylate, and then that of the a-carboxylate.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the CobB/CbiA family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the CobB/CobQ family. CobQ subfamily.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.9" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67340.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898911.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0425"/>
    <dbReference type="EnsemblBacteria" id="SHG67340">
        <property type="protein sequence ID" value="SHG67340"/>
        <property type="gene ID" value="SAMN05444003_0425"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00148">
        <property type="reaction ID" value="UER00220"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042242">
        <property type="term" value="F:cobyrinic acid a,c-diamide synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043802">
        <property type="term" value="F:hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00027">
        <property type="entry name" value="CobB_CbiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004484">
        <property type="entry name" value="CbiA_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002586">
        <property type="entry name" value="CobQ/CobB/MinD/ParA_Nub-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011698">
        <property type="entry name" value="GATase_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43873">
        <property type="entry name" value="PTHR43873"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01656">
        <property type="entry name" value="CbiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07685">
        <property type="entry name" value="GATase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00379">
        <property type="entry name" value="cobB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="3 4" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="4" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CbiA" evidence="5">
        <location>
            <begin position="4"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="domain" description="GATase_3" evidence="6">
        <location>
            <begin position="236"/>
            <end position="417"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="4">
        <location>
            <position position="317"/>
        </location>
    </feature>
    <feature type="site" description="Increases nucleophilicity of active site Cys" evidence="4">
        <location>
            <position position="415"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF07685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG67340.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="420" mass="44462" checksum="5DA2459813CF0198" modified="2017-03-15" version="1">MSFLIAAPGSGSGKTTITLGLLRALTQRGIAVRGAKSGPDYIDPRFHAAACGRECFNLDAWAMSPKRIASLAAGDVPLIIEGAMGLFDGAPPVGKGACADLARQLDLPVVLVVDASHMAQSVVALVGGFLLHDPAMRFAGVLLNKVGSARHEAMLKDALEPLGVPVLGTLFRQSDLSRPSRHLGLVQAGEHPDLSAFLDQVADQIETSVDMDAISALLQPVSSIGRATRLQPPAQRIAVAQDNAFAFAYPHILQDWSDAGAEIDVFSPLRNDPVPWADLVFLPGGYPELYAGRLAGNQIFLDSLRAHAESKPIYGECGGYMVLGDALTDAKGETHPMAGLLRLETSFETRKLHLGYRTLRSAAGPFQGDWMGHEFHYATTQNADGIPLFAATDATGSSMPPMGLVEGHVSGSFAHVIDKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LRD2</accession>
    <name>A0A1M5LRD2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">23S rRNA (Cytosine1962-C5)-methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_0441</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67712.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898940.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0441"/>
    <dbReference type="EnsemblBacteria" id="SHG67712">
        <property type="protein sequence ID" value="SHG67712"/>
        <property type="gene ID" value="SAMN05444003_0441"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015947">
        <property type="entry name" value="PUA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036974">
        <property type="entry name" value="PUA_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041532">
        <property type="entry name" value="RlmI_PUA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019614">
        <property type="entry name" value="SAM-dep_methyl-trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10672">
        <property type="entry name" value="Methyltrans_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17785">
        <property type="entry name" value="PUA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88697">
        <property type="entry name" value="SSF88697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 6" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PUA_3" evidence="5">
        <location>
            <begin position="12"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="domain" description="Methyltrans_SAM" evidence="4">
        <location>
            <begin position="175"/>
            <end position="344"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF10672"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF17785"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG67712.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="398" mass="42266" checksum="18E4371CAD5773EB" modified="2017-03-15" version="1">MTDTSLPVVRMLPKGNALAIRHGFPWVYANELVLDRRTKKLPAGSLAVLQDAERKPLGVVAFNANSKITCRMLDRSPDAVIDGAWFDGKLKAALAHRETLFDAPFYRLVHAEADGLPGVIIDRFGDVAVVQPNTAWADRLIEALLHALMRVTGVSTVIVNGTGRTRALEGLDDRTEVARGAAPAGPIAVPMNGAVYMADVLGGQKTGLFYDQRPNHAFAARLSKGARVLDVFSHVGGFGLATLAGGATSALAVDGSADALALAEQGAGQMGVADRFATRKGDAFSVLEDLAKDKELFDVVICDPPAFAPSKKALEAGLRAYERVARLAAPLVKPGGYLGLCSCSHAADLTKFRNASARGIGRARRRGQIVHTGFAGPDHPLMPHLAESGYLKALFFRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LT76</accession>
    <name>A0A1M5LT76_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Predicted Peptidoglycan domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0469</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68342.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898982.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0469"/>
    <dbReference type="EnsemblBacteria" id="SHG68342">
        <property type="protein sequence ID" value="SHG68342"/>
        <property type="gene ID" value="SAMN05444003_0469"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008565">
        <property type="entry name" value="DUF847"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018247">
        <property type="entry name" value="EF_Hand_1_Ca_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023346">
        <property type="entry name" value="Lysozyme-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018537">
        <property type="entry name" value="Peptidoglycan-bd_3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05838">
        <property type="entry name" value="Glyco_hydro_108"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09374">
        <property type="entry name" value="PG_binding_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53955">
        <property type="entry name" value="SSF53955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00018">
        <property type="entry name" value="EF_HAND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PG_binding_3" evidence="1">
        <location>
            <begin position="100"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09374"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG68342.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="203" mass="22815" checksum="6A2C7F051E71A58E" modified="2017-03-15" version="1">MPTVREIAEEIVRREGGYVNDTDDPGGATNHGVTIHTMRRLGLDLDGDGRVTADDVKVLPRDTAINIFIDHYFHGPRIDALPETLRASVFDMYVNAGSHTVQILQRVFNQMRIEVTVDGVIGPQTIAAAERAFQAAPDHLVDAYGIARRNYYYDLADRRVASRKYARRRDGGKGGWIRRAEEFIAPKYHLTAEQHQARVASWG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LWD1</accession>
    <name>A0A1M5LWD1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Deoxyguanosinetriphosphate triphosphohydrolase-like protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0483</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the dGTPase family. Type 2 subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68673.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899003.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0483"/>
    <dbReference type="EnsemblBacteria" id="SHG68673">
        <property type="protein sequence ID" value="SHG68673"/>
        <property type="gene ID" value="SAMN05444003_0483"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016793">
        <property type="term" value="F:triphosphoric monoester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01212">
        <property type="entry name" value="dGTPase_type2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006261">
        <property type="entry name" value="dNTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023023">
        <property type="entry name" value="dNTPase_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006674">
        <property type="entry name" value="HD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026875">
        <property type="entry name" value="PHydrolase_assoc_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01966">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13286">
        <property type="entry name" value="HD_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00471">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01353">
        <property type="entry name" value="dGTP_triPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51831">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HD" evidence="2">
        <location>
            <begin position="62"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51831"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG68673.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="390" mass="44393" checksum="D75E01BC196348A4" modified="2017-03-15" version="1">MAAPYATDPSNVRGRLFPEEESLFRSPFQRDRDRIIHASAFRRLKHKTQVFIEHEGDYFRTRLTHSIEVAQVARTVAAALELNVELTEAVALAHDLGHTPFGHTGEDALDRLMQPYGGFDHNAQALRIVTSLERHYAEWDGLNLTWETLEGIAKHNGPVTGDIPYALALYNERHDLELNTHASAEAQAAALADDIAYNNHDLHDGLRAELFSTDELAEMPILQDCFAEVDRKYPGLNYYRRRHEALRRFFGILVEDVIVVSRRKLAELGPASVHDVRHAGRMMVQFTPELWEDLKVIRKFLFTRMYRAPVVIEMREAVTHMIDELFPFFMENPEELPKQWRKDVACAGSETALARIVSDYIAGMTDRFAIQEHKRLIGGTPVPPGVTDGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LZS8</accession>
    <name>A0A1M5LZS8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">Nucleoside diphosphate kinase</fullName>
            <shortName evidence="3">NDK</shortName>
            <shortName evidence="3">NDP kinase</shortName>
            <ecNumber evidence="3 5">2.7.4.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Nucleoside-2-P kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">ndk</name>
        <name evidence="7" type="ORF">SAMN05444003_0540</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 5">
            <text>a 2'-deoxyribonucleoside 5'-diphosphate + ATP = a 2'-deoxyribonucleoside 5'-triphosphate + ADP</text>
            <dbReference type="Rhea" id="RHEA:44640"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:73316"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.6"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>a ribonucleoside 5'-diphosphate + ATP = a ribonucleoside 5'-triphosphate + ADP</text>
            <dbReference type="Rhea" id="RHEA:18113"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57930"/>
            <dbReference type="ChEBI" id="CHEBI:61557"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.6"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 4">Belongs to the NDK family.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.6" evidence="3 5"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69923.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899080.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0540"/>
    <dbReference type="EnsemblBacteria" id="SHG69923">
        <property type="protein sequence ID" value="SHG69923"/>
        <property type="gene ID" value="SAMN05444003_0540"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004550">
        <property type="term" value="F:nucleoside diphosphate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006241">
        <property type="term" value="P:CTP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006183">
        <property type="term" value="P:GTP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006165">
        <property type="term" value="P:nucleoside diphosphate phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006228">
        <property type="term" value="P:UTP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.141">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00451">
        <property type="entry name" value="NDP_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034907">
        <property type="entry name" value="NDK-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036850">
        <property type="entry name" value="NDK-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001564">
        <property type="entry name" value="Nucleoside_diP_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023005">
        <property type="entry name" value="Nucleoside_diP_kinase_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00334">
        <property type="entry name" value="NDK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01243">
        <property type="entry name" value="NUCDPKINASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00562">
        <property type="entry name" value="NDK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54919">
        <property type="entry name" value="SSF54919"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00469">
        <property type="entry name" value="NDP_KINASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 5 7" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 3" id="KW-0546">Nucleotide metabolism</keyword>
    <keyword evidence="3 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="1 3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="NDK" evidence="6">
        <location>
            <begin position="3"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="active site" description="Pros-phosphohistidine intermediate" evidence="3">
        <location>
            <position position="117"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="11"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="59"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="87"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="93"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="104"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="114"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00451"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU004011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU004013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00562"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG69923.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="140" mass="15325" checksum="5303F911AF540A26" modified="2017-03-15" version="1">MAIQRTFSIIKPDATKRNLTGQIVAKFEEAGLRIVASKRIQLTLAQAQHFYGVHKERPFFDELCEFMISEPIVVQVLEGEDAIAKNREVMGATNPADAAEGTIRKEFALSVGENSVHGSDAPETAAEEIAFFFSGLELVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M2L0</accession>
    <name>A0A1M5M2L0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Bifunctional enzyme IspD/IspF</fullName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName evidence="8">2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase</fullName>
                <ecNumber evidence="8">2.7.7.60</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="8">4-diphosphocytidyl-2C-methyl-D-erythritol synthase</fullName>
            </alternativeName>
            <alternativeName>
                <fullName evidence="8">MEP cytidylyltransferase</fullName>
                <shortName evidence="8">MCT</shortName>
            </alternativeName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="8">2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase</fullName>
                <shortName evidence="8">MECDP-synthase</shortName>
                <shortName evidence="8">MECPP-synthase</shortName>
                <shortName evidence="8">MECPS</shortName>
                <ecNumber evidence="8">4.6.1.12</ecNumber>
            </recommendedName>
        </domain>
    </protein>
    <gene>
        <name evidence="8" type="primary">ispDF</name>
        <name evidence="10" type="ORF">SAMN05444003_0608</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Bifunctional enzyme that catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>2-C-methyl-D-erythritol 4-phosphate + CTP + H(+) = 4-CDP-2-C-methyl-D-erythritol + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:13429"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <dbReference type="ChEBI" id="CHEBI:57823"/>
            <dbReference type="ChEBI" id="CHEBI:58262"/>
            <dbReference type="EC" id="2.7.7.60"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>4-CDP-2-C-methyl-D-erythritol 2-phosphate = 2-C-methyl-D-erythritol 2,4-cyclic diphosphate + CMP</text>
            <dbReference type="Rhea" id="RHEA:23864"/>
            <dbReference type="ChEBI" id="CHEBI:57919"/>
            <dbReference type="ChEBI" id="CHEBI:58483"/>
            <dbReference type="ChEBI" id="CHEBI:60377"/>
            <dbReference type="EC" id="4.6.1.12"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-phosphate: step 2/6.</text>
    </comment>
    <comment type="pathway">
        <text evidence="8">Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-phosphate: step 4/6.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the IspD/TarI cytidylyltransferase family. IspD subfamily.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">In the C-terminal section; belongs to the IspF family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">In the N-terminal section; belongs to the IspD/TarI cytidylyltransferase family. IspD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.60" evidence="8"/>
    <dbReference type="EC" id="4.6.1.12" evidence="8"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG71466.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900386.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0608"/>
    <dbReference type="EnsemblBacteria" id="SHG71466">
        <property type="protein sequence ID" value="SHG71466"/>
        <property type="gene ID" value="SAMN05444003_0608"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00056">
        <property type="reaction ID" value="UER00093"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008685">
        <property type="term" value="F:2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050518">
        <property type="term" value="F:2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019288">
        <property type="term" value="P:isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016114">
        <property type="term" value="P:terpenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02516">
        <property type="entry name" value="CDP-ME_synthetase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00554">
        <property type="entry name" value="MECDP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00108">
        <property type="entry name" value="IspD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01520">
        <property type="entry name" value="IspDF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00107">
        <property type="entry name" value="IspF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001228">
        <property type="entry name" value="IspD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026596">
        <property type="entry name" value="IspD/F"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034683">
        <property type="entry name" value="IspD/TarI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018294">
        <property type="entry name" value="ISPD_synthase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003526">
        <property type="entry name" value="MECDP_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036571">
        <property type="entry name" value="MECDP_synthase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43181">
        <property type="entry name" value="PTHR43181"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01128">
        <property type="entry name" value="IspD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02542">
        <property type="entry name" value="YgbB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69765">
        <property type="entry name" value="SSF69765"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00453">
        <property type="entry name" value="ispD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00151">
        <property type="entry name" value="ispF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01295">
        <property type="entry name" value="ISPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0414">Isoprene biosynthesis</keyword>
    <keyword evidence="8" id="KW-0456">Lyase</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7 8" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="5 8" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="YgbB" evidence="9">
        <location>
            <begin position="220"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="region of interest" description="2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase" evidence="8">
        <location>
            <begin position="1"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="region of interest" description="2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase" evidence="8">
        <location>
            <begin position="221"/>
            <end position="376"/>
        </location>
    </feature>
    <feature type="region of interest" description="4-CDP-2-C-methyl-D-erythritol 2-phosphate binding" evidence="8">
        <location>
            <begin position="227"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="region of interest" description="4-CDP-2-C-methyl-D-erythritol 2-phosphate binding" evidence="8">
        <location>
            <begin position="253"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="region of interest" description="4-CDP-2-C-methyl-D-erythritol 2-phosphate binding" evidence="8">
        <location>
            <begin position="275"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="region of interest" description="4-CDP-2-C-methyl-D-erythritol 2-phosphate binding" evidence="8">
        <location>
            <begin position="351"/>
            <end position="354"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="227"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="229"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="261"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="358"/>
        </location>
        <ligand>
            <name>4-CDP-2-C-methyl-D-erythritol 2-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57919"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="361"/>
        </location>
        <ligand>
            <name>4-CDP-2-C-methyl-D-erythritol 2-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57919"/>
        </ligand>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="8">
        <location>
            <position position="15"/>
        </location>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="8">
        <location>
            <position position="22"/>
        </location>
    </feature>
    <feature type="site" description="Positions MEP for the nucleophilic attack" evidence="8">
        <location>
            <position position="147"/>
        </location>
    </feature>
    <feature type="site" description="Positions MEP for the nucleophilic attack" evidence="8">
        <location>
            <position position="200"/>
        </location>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="8">
        <location>
            <position position="253"/>
        </location>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="8">
        <location>
            <position position="352"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001282"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009789"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG71466.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="376" mass="40338" checksum="70B3ED28A59F57A6" modified="2017-03-15" version="1">MTTATIIVAAGRGKRAGGDLPKQWQMLTGKPVLGRTIDAFREQTDVICVVLHPDDHDIWNTFGLEADAVVNGGATRDESVRAGLMAVKDHEPSKVLVHDAARPLVSKQTIQRVLDALEEHPGAAPALPVTDALWRSEGKAVEAAVSRDHLYRAQTPQGFNYAQILEAHLDRKTPATDDVEVARDAGMSVQIVDGDENNLKITMAADFDRAAQILGENMDIRLGNGYDVHRFGDGDHVVLCGVKIPHGRGLQGHSDADVSMHAVTDAVYGALGQGDIGQHFPPSDPQWKGAASHIFLEHAVALAAEHGFSISNVDCTLVCEYPKIGPHQFKMKAKMAAIMGISSDRISVKATTSERLGFTGREEGIASIATATLVKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M411</accession>
    <name>A0A1M5M411_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0628</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72001.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899189.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG72001">
        <property type="protein sequence ID" value="SHG72001"/>
        <property type="gene ID" value="SAMN05444003_0628"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG72001.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="202" mass="22375" checksum="590223946EAE3FD5" modified="2017-03-15" version="1">MLKDLVTETDEQTHLGPEARFILDEIEANWRKTGSIRSGNEDQLNKAMGLSLSRNEVFLIQYRGPGDGEVLFADKGLQEHFCSDAPKLMVADLFEDQTRETALELMDASFALPAIVNLPLTAQRGAFRKPLRAELLLLPIFDGPNRTKFLIAALVTDGRGMPSKSRFELSKDVSFRCEALQGALPDRRTSKGPQLVVDNTAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M6X1</accession>
    <name>A0A1M5M6X1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0670</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73031.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899269.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0670"/>
    <dbReference type="EnsemblBacteria" id="SHG73031">
        <property type="protein sequence ID" value="SHG73031"/>
        <property type="gene ID" value="SAMN05444003_0670"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="78"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="106"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="146"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG73031.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="176" mass="19783" checksum="2A92405F59AE0A5A" modified="2017-03-15" version="1">MDWSSTLLQVIDLRSFSSVWYWMAVAVVWSSVSHFVLGIPYDLIQRAKRHGGQGLIDLEDVVRVNVNRFMHIGETAGLFLASFATFLLTGLLVLGFFYWIELAQAIFLLAFPLSIVGMVTLSTARKISVSDPKGEDLFGVLHRHRLITQSIGMCALFVTAMFGMYENLDVARHLIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MFP7</accession>
    <name>A0A1M5MFP7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0804</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899477.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0804"/>
    <dbReference type="EnsemblBacteria" id="SHG76002">
        <property type="protein sequence ID" value="SHG76002"/>
        <property type="gene ID" value="SAMN05444003_0804"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009758">
        <property type="entry name" value="DUF1326"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07040">
        <property type="entry name" value="DUF1326"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG76002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="236" mass="26139" checksum="D51BBD9933A80906" modified="2017-03-15" version="1">MAEKTRKPGDKLKISQRIDQRMENNPLRRKKRPTEWKIKGELFLNCSCTVFCPCVVSLGAHPPTEGHCHAWMAIAIDEGHFEGEDLGGLNVGLLVDIPGRMAEGNWKVAAYVDERATQKAYNGILKIFSGEAGGTTGLFTMLVSEIIGAEREKVEIVRDGNKRGIYIGRKIQGEIETVSGLSADHPVMITNSKYWMGPDIIAARGLKSRVRDYGRVWDFGGKSAEICPIEWQGPNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MFZ7</accession>
    <name>A0A1M5MFZ7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0787</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75623.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899462.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0787"/>
    <dbReference type="EnsemblBacteria" id="SHG75623">
        <property type="protein sequence ID" value="SHG75623"/>
        <property type="gene ID" value="SAMN05444003_0787"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014550">
        <property type="entry name" value="UCP028704_OpgC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38592">
        <property type="entry name" value="PTHR38592"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10129">
        <property type="entry name" value="OpgC_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF028704">
        <property type="entry name" value="UPC028704"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="31"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="67"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="104"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="165"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="192"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="239"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="263"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="310"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="348"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="384"/>
            <end position="405"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG75623.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="423" mass="48305" checksum="E066ED57C44656BC" modified="2017-03-15" version="1">MTAANTPLRADPSAMSPQVAEPRRERDIRLDFFRGIAMFIILFAHTPGNPWTSWIPARWGFSDATEMFVFCSGMASAIAFGATFDRAGMFLGTARVGYRIWQVYWAHVGLFFATAALTVYLTELDITSRNYWGQLNLWMLFVESEHWENPNILLSFMTLRWVPNLFDILPMYMVILAMMPVVIILSRLHFGLVVLASVTMWVFAQRNLMEHFGLPYLNFTAEPWVGNDDWQRRWFLNPFGWQLLFFTGFAFMRGWIPKPPVTAWLLCVAAFIVVLNIPFSNIGVREFGFEWAREWRMDHRQWFSKTDHGILRYVQFLALAYLAWVFAGDKGSRIRAGTSALGRSWGKILAMILKVGQQSLAVFVVSIIVGRLNGFILDVFDRDAVAVTLVNLFGMAVLVATAYLVGWTKSQPWRVTGGSNVKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MGD7</accession>
    <name>A0A1M5MGD7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Ribonuclease D</fullName>
            <shortName evidence="4">RNase D</shortName>
            <ecNumber evidence="4">3.1.13.5</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rnd</name>
        <name evidence="6" type="ORF">SAMN05444003_0823</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>Exonucleolytic cleavage that removes extra residues from the 3'-terminus of tRNA to produce 5'-mononucleotides.</text>
            <dbReference type="EC" id="3.1.13.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the RNase D family.</text>
    </comment>
    <dbReference type="EC" id="3.1.13.5" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76484.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899509.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0823"/>
    <dbReference type="EnsemblBacteria" id="SHG76484">
        <property type="protein sequence ID" value="SHG76484"/>
        <property type="gene ID" value="SAMN05444003_0823"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008408">
        <property type="term" value="F:3'-5' exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033890">
        <property type="term" value="F:ribonuclease D activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042780">
        <property type="term" value="P:tRNA 3'-end processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01899">
        <property type="entry name" value="RNase_D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002562">
        <property type="entry name" value="3'-5'_exonuclease_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010997">
        <property type="entry name" value="HRDC-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002121">
        <property type="entry name" value="HRDC_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044876">
        <property type="entry name" value="HRDC_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006292">
        <property type="entry name" value="RNase_D"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01612">
        <property type="entry name" value="DNA_pol_A_exo1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00570">
        <property type="entry name" value="HRDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00474">
        <property type="entry name" value="35EXOc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47819">
        <property type="entry name" value="SSF47819"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01388">
        <property type="entry name" value="rnd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50967">
        <property type="entry name" value="HRDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 4" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="HRDC" evidence="5">
        <location>
            <begin position="212"/>
            <end position="293"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG76484.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="385" mass="43079" checksum="5FBC760F2928EC60" modified="2017-03-15" version="1">MKIITTTEALQEFCNEAARRPYVTVDTEFLRERTYYSKLCLVQLAYKDDDSQDAVLVDPLVKGLSLEPLYELFKDVGVVKVFHAARQDLEIFFVDAGLIPTPLFDTQVAAMVCGFGDQVGYETLVRKIAQSSLDKSSRFTDWSRRPLSDAQQKYALADVTHLRDIYEFLSEKLDKSGRKKWVAEEMAVLNDPATYQVDPDEAWKRVKTRTNSGRFLAVVRELARFRETYAQSNNVPRNRVFKDDALVELASTKPENEKDLSRSRLLLREARKGPIADGIMEAVKAGLNVPNDALPKPDRSREKLQVNPAIADMLRVLLKAKAEQEGVAQKLIASSQDLDVLAAGGRDIPALKGWRGEVFGKSAIELCEGRVGLAVDGLKVVTVAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MHL9</accession>
    <name>A0A1M5MHL9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cysteine desulfuration protein SufE</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0821</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the SufE family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76429.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899507.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0821"/>
    <dbReference type="EnsemblBacteria" id="SHG76429">
        <property type="protein sequence ID" value="SHG76429"/>
        <property type="gene ID" value="SAMN05444003_0821"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003808">
        <property type="entry name" value="Fe-S_metab-assoc_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43597">
        <property type="entry name" value="PTHR43597"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02657">
        <property type="entry name" value="SufE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SufE" evidence="2">
        <location>
            <begin position="11"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010282"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02657"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG76429.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="134" mass="14602" checksum="EFC953D156DD56F7" modified="2017-03-15" version="1">MATAAFEEIAEDFEFLDDWEDRYRHVIDMGKAMEPLDDALKVSVTKVDGCASQVWLHPTIENGVFSFKGDSDAMIVRGLIAVLGALYNGVPTAEIGGIDAHAELGRLGLNDHLSAQRSNGLRAMIERIRQVASA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MID3</accession>
    <name>A0A1M5MID3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Tungstate transport system substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0841</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899539.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0841"/>
    <dbReference type="EnsemblBacteria" id="SHG76917">
        <property type="protein sequence ID" value="SHG76917"/>
        <property type="gene ID" value="SAMN05444003_0841"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024370">
        <property type="entry name" value="PBP_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12849">
        <property type="entry name" value="PBP_like_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012951564" evidence="1">
        <location>
            <begin position="16"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="domain" description="PBP_domain" evidence="2">
        <location>
            <begin position="22"/>
            <end position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG76917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="261" mass="28041" checksum="CD73EA721E46F8EB" modified="2017-03-15" version="1">MIRFLPFLLAAPAFADPITLQSTTSTQNSGLYDAILPAFTAESGIEVQVVAVGTGQALQNARNCDGDLLIVHATEAEEAFVADGYGTNRADLMYNDFVIVGPPADPADIRGTDDVQAALSAIAAAEARFMSRGDDSGTHKAELRLWAPTDIDPAEFSGTWYLETGAGMGATLNTARGLNAYVMTDRATWLRFGNKGDFELLLEGDPDLFNQYGVVQISPDHCPRANLTDAATLRNWLLNDGQEAIAAYEVEGEQLFFPNAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MIH7</accession>
    <name>A0A1M5MIH7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methylenetetrahydrofolate reductase (NADPH)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0845</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77021.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900408.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0845"/>
    <dbReference type="EnsemblBacteria" id="SHG77021">
        <property type="protein sequence ID" value="SHG77021"/>
        <property type="gene ID" value="SAMN05444003_0845"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029041">
        <property type="entry name" value="FAD-linked_oxidoreductase-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51730">
        <property type="entry name" value="SSF51730"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG77021.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="313" mass="33726" checksum="7F2013C143C32DA5" modified="2017-03-15" version="1">MSLLPFKKKQADVEVTLNPEMEAFLKDYSIEVMPRTAEKVEDFTSLLPAGTRVYIAHIEGTPIEDMVATAKRLSADGYNVMPHFPARIIKDEATLADWIARYQGEAGVEQALLLAGGVAEPHGDFHSSMQLLETGLFGKAGFKHLHVAGHPEGNKDIDPDGSDKNVMDALLWKQKFNETSDAQMALATQFAFEAGPIIEWADAIKAAGVDIPIHIGIAGPAKLQTLIKFAIACGVGPSLKVLQKRAMDVTKLLLPYEPTEVLTELAAHKAANPDFNITNVHFFPLGGIKTNANWAIAHGGASTAPANPTKEAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MP04</accession>
    <name>A0A1M5MP04_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Aconitate hydratase</fullName>
            <shortName evidence="9">Aconitase</shortName>
            <ecNumber evidence="9">4.2.1.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">SAMN05444003_0939</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the isomerization of citrate to isocitrate via cis-aconitate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8 9">
            <text>citrate = D-threo-isocitrate</text>
            <dbReference type="Rhea" id="RHEA:10336"/>
            <dbReference type="ChEBI" id="CHEBI:15562"/>
            <dbReference type="ChEBI" id="CHEBI:16947"/>
            <dbReference type="EC" id="4.2.1.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <text evidence="9">Binds 1 [4Fe-4S] cluster per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Carbohydrate metabolism; tricarboxylic acid cycle; isocitrate from oxaloacetate: step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the aconitase/IPM isomerase family.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.3" evidence="9"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899675.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0939"/>
    <dbReference type="EnsemblBacteria" id="SHG79154">
        <property type="protein sequence ID" value="SHG79154"/>
        <property type="gene ID" value="SAMN05444003_0939"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00223">
        <property type="reaction ID" value="UER00718"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003994">
        <property type="term" value="F:aconitate hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047780">
        <property type="term" value="F:citrate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd01580">
        <property type="entry name" value="AcnA_IRP_Swivel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.19.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.499.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044137">
        <property type="entry name" value="AcnA_IRP_Swivel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015931">
        <property type="entry name" value="Acnase/IPM_dHydase_lsu_aba_1/3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001030">
        <property type="entry name" value="Acoase/IPM_deHydtase_lsu_aba"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015928">
        <property type="entry name" value="Aconitase/3IPM_dehydase_swvl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006249">
        <property type="entry name" value="Aconitase/IRP2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018136">
        <property type="entry name" value="Aconitase_4Fe-4S_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036008">
        <property type="entry name" value="Aconitase_4Fe-4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000573">
        <property type="entry name" value="AconitaseA/IPMdHydase_ssu_swvl"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11670">
        <property type="entry name" value="PTHR11670"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00330">
        <property type="entry name" value="Aconitase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00694">
        <property type="entry name" value="Aconitase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00415">
        <property type="entry name" value="ACONITASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53732">
        <property type="entry name" value="SSF53732"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01341">
        <property type="entry name" value="aconitase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00450">
        <property type="entry name" value="ACONITASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01244">
        <property type="entry name" value="ACONITASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5 9" id="KW-0408">Iron</keyword>
    <keyword evidence="6 9" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="7 9" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aconitase" evidence="10">
        <location>
            <begin position="81"/>
            <end position="565"/>
        </location>
    </feature>
    <feature type="domain" description="Aconitase_C" evidence="11">
        <location>
            <begin position="699"/>
            <end position="820"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU361275"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00330"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG79154.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="896" mass="97110" checksum="A962FACE35394A16" modified="2017-03-15" version="1">MTVTVGKDTAKTRKSLKIGDKTIAYYSIKAAEEAGLGDFSKLPAALKVVLENLLRFEDDGFSVSTDDIKAFSDWAKNGGKNPREIAYRPARVLMQDFTGVPAVVDLAAMRDGIVALGGDAEQINPLNPVDLVIDHSVMIDEFGNPRAFQMNVDREYERNMERYQFLKWGQGAFNNFRVVPPGTGICHQVNLEYLAQTVWTDTDQNGEEVAYPDTLVGTDSHTTMVNGLAVLGWGVGGIEAEAAMLGQPVSMLIPEVVGFELTGEMMEGTTGTDLVLKVVEMLRELGVVGKFVEFFGEGLDRLPLADRATIANMAPEYGATCGFFPIDGETLRYLRNTGRDEDRIALVEAYAKENGFWRDENYAPIYTTKLHLDMGTIVPAISGPKRPQDYVALTDAKAAFRKEMEDTFKRLLGKEIDVAGEDYTMESGKVVIASITSCTNTSNPYVMIGAGLVARKAAALGLDRKPWVKTSLAPGSKVVSEYLEAAGLQDDLDKIGFNLVGYGCTTCIGNSGPIQKELSEAIAEGDLVATSVLSGNRNFEGRISPDVRANYLASPPLVVAYALAGTMDIDLNSEAIAQDQDGNDVFLKDIWPTSDEINALVEQTVTREGFISKYADVFKGDEKWQAVETTDSLTYDWPAASTYVQNPPYFQGMGAQAGKISDVVNAKVLAVLGDMITTDHISPAGSFKDTTPAGQYLLDRQVPMREFNSYGSRRGNHEVMMRGTFANIRIKNEMLDGVEGGYTKGPDGTQTSIFDASMAHQAAGTPLVIFGGVQYGAGSSRDWAAKGTALLGVKAVIAESFERIHRSNLVGMGVIPFEFTGGDTRKSLGLTGEETVTIEGLESVQPLQEVPAKIEMADGSVKEITLKCRIDTAVEIDYIENGGVLHYVLRNLAKAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MRN6</accession>
    <name>A0A1M5MRN6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Probable branched-chain-amino-acid aminotransferase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0977</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Acts on leucine, isoleucine and valine.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79887.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899722.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0977"/>
    <dbReference type="EnsemblBacteria" id="SHG79887">
        <property type="protein sequence ID" value="SHG79887"/>
        <property type="gene ID" value="SAMN05444003_0977"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001544">
        <property type="entry name" value="Aminotrans_IV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036038">
        <property type="entry name" value="Aminotransferase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043132">
        <property type="entry name" value="BCAT-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043131">
        <property type="entry name" value="BCAT-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01063">
        <property type="entry name" value="Aminotran_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56752">
        <property type="entry name" value="SSF56752"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00014472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG79887.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="305" mass="33649" checksum="022CC35665A3B34C" modified="2017-03-15" version="1">MTTTHDALEDPRNADILIYVNGDVVHRDEAKVSVYDSGFMLGDGMWEGMRLYDGVWAFFDEHMDRFFNSCKAVSLDVGTDKAGIASALEKTRQANDMHDDVHCRLMLTRGVKVKPFQHPSLSQSGPTLVIIMEHSKPADNLHKKGIRLATVPQVRGLPMAQDAKYNSHSKLNCVIACLQAEQAGADEGLMLDPHGFVNTTNACNFFIVRRGEVWTSNGDYCMNGVTRQKVIDLCRANDIPVFEKNYSLYEAYGADEAFLTGTFGAQTPVAEIDGKSIGTGDRPVMARIQTLYKQAIADHVAAQKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MS75</accession>
    <name>A0A1M5MS75_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0997</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80290.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG80290">
        <property type="protein sequence ID" value="SHG80290"/>
        <property type="gene ID" value="SAMN05444003_0997"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG80290.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="70" mass="7958" checksum="AA9F1B1429FB645F" modified="2017-03-15" version="1">MGEAYVDDETWITTLKAARDQAVVACEVREEAFQNFDDASSENPQIRWINDPCEIVVSLNRSIDSHISEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MXG2</accession>
    <name>A0A1M5MXG2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1071</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81812.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899807.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1071"/>
    <dbReference type="EnsemblBacteria" id="SHG81812">
        <property type="protein sequence ID" value="SHG81812"/>
        <property type="gene ID" value="SAMN05444003_1071"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12706">
        <property type="entry name" value="Lactamase_B_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lactamase_B" evidence="1">
        <location>
            <begin position="35"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG81812.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="264" mass="28835" checksum="DA4CC31B4099248C" modified="2017-03-15" version="1">MSLSFRILGCGSSGGVPRLGGQWGECDPTNPKNVRKRCSLLITRSGPDGNTRVLIDTSPDMRQQLLDAEVGHLDAVVYTHSHADHVHGIDDLRMIVFNTRTKLQVWADGPTSNALLDRFGYAFVQPKGSPYPPILELNTIDADIVIDGAGGPINLTPFEVEHGTIDALGFRVAGVAYLPDVSDIPESSWPVLDGLDTWIVDALRRTPHPSHSHLANTLEWIEQAKPKSAVLTNLHNDLDYQTLNDETPDHVQPAFDGLTITVPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MY72</accession>
    <name>A0A1M5MY72_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Peptide/nickel transport system substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1064</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial solute-binding protein 5 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899801.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1064"/>
    <dbReference type="EnsemblBacteria" id="SHG81683">
        <property type="protein sequence ID" value="SHG81683"/>
        <property type="gene ID" value="SAMN05444003_1064"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030288">
        <property type="term" value="C:outer membrane-bounded periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030678">
        <property type="entry name" value="Peptide/Ni-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039424">
        <property type="entry name" value="SBP_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000914">
        <property type="entry name" value="SBP_5_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30290">
        <property type="entry name" value="PTHR30290"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00496">
        <property type="entry name" value="SBP_bac_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002741">
        <property type="entry name" value="MppA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012951571" evidence="2">
        <location>
            <begin position="26"/>
            <end position="526"/>
        </location>
    </feature>
    <feature type="domain" description="SBP_bac_5" evidence="3">
        <location>
            <begin position="69"/>
            <end position="437"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG81683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="526" mass="58414" checksum="61C2CF74DE740C0D" modified="2017-03-15" version="1">MKTSRITKATLLVGTILVGASAANAETFRWASTTDPQTMDPHAVNSAPVLSFLNNVYEGLVRRDRGMSIEGSLAESWEPLEGENGWRFNLREGVTFADGAAFTAEDVLFSYQRASNEAADVRSWFSPVTDVRVVDDYTVDFITSAPNPLFPDSIANFMILDKDWAETNDAALPATDAENFATMNANGTGPFMLSSRDPGVQTVLVPNPNWWGEVEHNVTEGIFTPIGNSATGLAALLSGEIDFIQPIPLQDAAQVEERDGYSVLEGEETRVIMFGFPHEHDTLLYSTDVTDANPFQDVRVRQAAAHAIDIDAIDRVLFRGKIEPASQLVPAGISGYSEENSDRLGYDPDRAKELLAEAGYPDGFSFGLKCPNDRYINDEALCRAAASMFAAVGMDAELSTGPVRDYWPQLREDDFDMYLLGWSPGTFDMEHPIRFLKHTQDDEKRLGSWNFGNFSNARVDELLPLIQQEVDLEARQAMIDEVVAISQEEMAYIPLYTQPLIWAAKDNVDMVQRADNFFLLRWVTVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N0A8</accession>
    <name>A0A1M5N0A8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DNA ligase (ATP)</fullName>
            <ecNumber evidence="1">6.5.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1121</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EC" id="6.5.1.1" evidence="1"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899847.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1121"/>
    <dbReference type="EnsemblBacteria" id="SHG82978">
        <property type="protein sequence ID" value="SHG82978"/>
        <property type="gene ID" value="SAMN05444003_1121"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003910">
        <property type="term" value="F:DNA ligase (ATP) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026333">
        <property type="entry name" value="ATP_dep_DNA_lig_pp_1105_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012309">
        <property type="entry name" value="DNA_ligase_ATP-dep_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012310">
        <property type="entry name" value="DNA_ligase_ATP-dep_cent"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016059">
        <property type="entry name" value="DNA_ligase_ATP-dep_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012308">
        <property type="entry name" value="DNA_ligase_ATP-dep_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036599">
        <property type="entry name" value="DNA_ligase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04679">
        <property type="entry name" value="DNA_ligase_A_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01068">
        <property type="entry name" value="DNA_ligase_A_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04675">
        <property type="entry name" value="DNA_ligase_A_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117018">
        <property type="entry name" value="SSF117018"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04120">
        <property type="entry name" value="DNA_lig_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00697">
        <property type="entry name" value="DNA_LIGASE_A1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50160">
        <property type="entry name" value="DNA_LIGASE_A3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0235">DNA replication</keyword>
    <keyword evidence="2 7" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA_LIGASE_A3" evidence="6">
        <location>
            <begin position="302"/>
            <end position="433"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG82978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="529" mass="60373" checksum="185C68255DEB4F23" modified="2017-03-15" version="1">MKDFAELFRHVDQTTKTNAKVAALAEYFATATEDDKLWTIALFTGRRPKRTVTSSKLREWAADAAGIPLWLFEDSYSVVGDLAETISLVLPEAKGVEDHSLTYWISRTKSFPKLEEDDRKTAVLSAWTQLPNYQRFLFNKLLTGGFRVGVSAKLVTRALSQTTGQDAAVLTHKLMGQWTPDTTTWQALIEDDDPQSDLSKPYPFYLAHALDNLDQLSDPTGWNAERKWDGIRGQLIVRQGEHYIWSRGEDLMTDRFPELAQLKDFVPDGTVIDGEILAFRDGAPLSFNALQKRIGRKTVPKKLLAEAPVVLMAYDLLEDQGRDIREVTFAERRNRLEKIIKSAPDHLPLHLSSSVPFDSWDHLAKERDRSRDLNAEGLMLKRLDSPYLSGRKRGDWWKWKIDPLTIDAVMIYAQAGHGRRANLFTDYTFAVWNGNELTPFTKAYSGLTDAEFREITSWVRKNTLQRFGPVRQVPPHHVFEIAFEGIQASPRHKSGVALRFPRMLRWRKDKPVAEANTLADLKEMLEPYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NB25</accession>
    <name>A0A1M5NB25_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1291</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86697.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899994.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1291"/>
    <dbReference type="EnsemblBacteria" id="SHG86697">
        <property type="protein sequence ID" value="SHG86697"/>
        <property type="gene ID" value="SAMN05444003_1291"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009562">
        <property type="entry name" value="DUF1178"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06676">
        <property type="entry name" value="DUF1178"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF032131">
        <property type="entry name" value="UCP032131"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG86697.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="136" mass="14973" checksum="CD1653077F6DDC81" modified="2017-03-15" version="1">MIRYTLSCEHDHSFESWFQSADAFDTLSKAGMVTCPECGTTKVSKQLMAPSLNKKAMAVAPLAAGDVHPLEKMRKEVEANADYVGKEFAKEARAMHDGDKPERAIYGETNAKDAKKLIEDGVPVMPLPFVPTKRSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NBU8</accession>
    <name>A0A1M5NBU8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="15">Cytochrome c oxidase subunit 2</fullName>
            <ecNumber evidence="15">7.1.1.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="20" type="ORF">SAMN05444003_1310</name>
    </gene>
    <organism evidence="20 21">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="20 21" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20 21">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12 15">Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="13">
            <text>4 Fe(II)-[cytochrome c] + 8 H(+)(in) + O2 = 4 Fe(III)-[cytochrome c] + 4 H(+)(out) + 2 H2O</text>
            <dbReference type="Rhea" id="RHEA:11436"/>
            <dbReference type="Rhea" id="RHEA-COMP:10350"/>
            <dbReference type="Rhea" id="RHEA-COMP:14399"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
            <dbReference type="ChEBI" id="CHEBI:29034"/>
            <dbReference type="EC" id="7.1.1.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="15">
            <name>Cu cation</name>
            <dbReference type="ChEBI" id="CHEBI:23378"/>
        </cofactor>
        <text evidence="15">Binds a copper A center.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="14">Cell membrane</location>
            <topology evidence="14">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 14">Belongs to the cytochrome c oxidase subunit 2 family.</text>
    </comment>
    <dbReference type="EC" id="7.1.1.9" evidence="15"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86971.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1310"/>
    <dbReference type="EnsemblBacteria" id="SHG86971">
        <property type="protein sequence ID" value="SHG86971"/>
        <property type="gene ID" value="SAMN05444003_1310"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070469">
        <property type="term" value="C:respirasome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004129">
        <property type="term" value="F:cytochrome-c oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045187">
        <property type="entry name" value="CcO_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002429">
        <property type="entry name" value="CcO_II-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001505">
        <property type="entry name" value="Copper_CuA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008972">
        <property type="entry name" value="Cupredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014222">
        <property type="entry name" value="Cyt_c_oxidase_su2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011759">
        <property type="entry name" value="Cyt_c_oxidase_su2_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036257">
        <property type="entry name" value="Cyt_c_oxidase_su2_TM_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22888">
        <property type="entry name" value="PTHR22888"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00116">
        <property type="entry name" value="COX2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02790">
        <property type="entry name" value="COX2_TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49503">
        <property type="entry name" value="SSF49503"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81464">
        <property type="entry name" value="SSF81464"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02866">
        <property type="entry name" value="CoxB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00078">
        <property type="entry name" value="COX2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50857">
        <property type="entry name" value="COX2_CUA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50999">
        <property type="entry name" value="COX2_TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 15" id="KW-0186">Copper</keyword>
    <keyword evidence="8 14" id="KW-0249">Electron transport</keyword>
    <keyword evidence="11 16" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 15" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="21" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 14" id="KW-0679">Respiratory chain</keyword>
    <keyword evidence="17" id="KW-0732">Signal</keyword>
    <keyword evidence="7" id="KW-1278">Translocase</keyword>
    <keyword evidence="5 14 16" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 16" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 14" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="17">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012997017" description="Cytochrome c oxidase subunit 2" evidence="17">
        <location>
            <begin position="26"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="62"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="104"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="domain" description="COX2_TM" evidence="19">
        <location>
            <begin position="37"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="domain" description="COX2_CUA" evidence="18">
        <location>
            <begin position="133"/>
            <end position="269"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007866"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022660"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00024688"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00029368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU000456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="RuleBase" id="RU004024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS50857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="19">
        <source>
            <dbReference type="PROSITE" id="PS50999"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="EMBL" id="SHG86971.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="277" mass="30527" checksum="EC4795F318754009" modified="2017-03-15" version="1">MRLTTHLKSLWATAGLMLAGSASLAQDVNQELEIVGIPEPAGTSFQPAATKLMSDIIWLDTLLLYIITAISLFVMGLLIWVIVRFNRKSNPTPATFTHNSPLEVAWTVVPIVILVIIGAFSLPVLFDQQEIPEGDVNIKVTGYQWYWGYEYTDENIAFDSFMLAEEELADFGYSEDLYLLATDTAVVVPVGATVVMDVTGADVIHSWTIPAFGVKQDAVPGRIAQLWFAAEREGVYFGQCSELCGQAHAYMPITVKVVSQEVYDEWLVAAKEENPAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NCD3</accession>
    <name>A0A1M5NCD3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pilus assembly protein CpaB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1322</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87147.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900018.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1322"/>
    <dbReference type="EnsemblBacteria" id="SHG87147">
        <property type="protein sequence ID" value="SHG87147"/>
        <property type="gene ID" value="SAMN05444003_1322"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017592">
        <property type="entry name" value="Pilus_assmbl_Flp-typ_CpaB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031571">
        <property type="entry name" value="RcpC_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013974">
        <property type="entry name" value="SAF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16976">
        <property type="entry name" value="RcpC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00858">
        <property type="entry name" value="SAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03177">
        <property type="entry name" value="pilus_cpaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SAF" evidence="1">
        <location>
            <begin position="48"/>
            <end position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00858"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG87147.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="289" mass="30819" checksum="E62FD65A280AD8F3" modified="2017-03-15" version="1">MRALFVLVLVVGMGLAGFAVYMVNNHLTAQKQANAALMAQQQLNIPTVEVYAVNREIAYGEPLTMEDVVKIHYAKDFLPEGSFASEEELFPEGTDVVRIVTRKMEPNEPVLAAKVTAPGEVNGISGILAPGLRAFTINVDQSTGVSGFLQPGNRVDVYWTGSVDSLGRNASREITKLIKTGVELIAVNQSADASSAENLSIRTVTVQVSPGDVADLATLQSTGTLSLSLVGQGDTIEVTDVIETDMNKILGIEAPVEVAQEAPVEAPRVCTIRQRSGTEIKEIPIPCSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NEC3</accession>
    <name>A0A1M5NEC3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">EamA-like transporter family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1367</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87924.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900058.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG87924">
        <property type="protein sequence ID" value="SHG87924"/>
        <property type="gene ID" value="SAMN05444003_1367"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="30"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="58"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="98"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="143"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="172"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="205"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="232"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="145"/>
            <end position="276"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG87924.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="278" mass="29385" checksum="55E64CFD157707FB" modified="2017-03-15" version="1">MSIWVLLAVLFAALLHATWNALIKVGASKMTSMLIMTLVQGAAGLAIALTRAFPTGEVWLWLLASGLFHSAYRLFLVYAYEQGDLSRVYPIARGAAPMLVLVISAVLLSDVIAGLEYLGILVLGLGILLMAQGVFRSHESAKLVPLALGSAAMTAGYSLVDGLGARAAGDAVTYVAWLFALDAVFFTPIFLALRGRSALTASRQTWVMGSLAAMASYGAYAIVVWAMTLAPIALVTALRETSILFAVMIGWLFFGEKMGVQKAAAAGLIVLGVVITRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NET4</accession>
    <name>A0A1M5NET4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Prephenate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1377</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88116.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900069.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1377"/>
    <dbReference type="EnsemblBacteria" id="SHG88116">
        <property type="protein sequence ID" value="SHG88116"/>
        <property type="gene ID" value="SAMN05444003_1377"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008977">
        <property type="term" value="F:prephenate dehydrogenase (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004665">
        <property type="term" value="F:prephenate dehydrogenase (NADP+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006571">
        <property type="term" value="P:tyrosine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003099">
        <property type="entry name" value="Prephen_DH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02153">
        <property type="entry name" value="PDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51176">
        <property type="entry name" value="PDH_ADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Prephenate/arogenate dehydrogenase" evidence="1">
        <location>
            <begin position="7"/>
            <end position="296"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG88116.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="307" mass="33344" checksum="26DD94FC2316D273" modified="2017-03-15" version="1">MSGVIYEKVALIGLGLIASSITHAAKRTGLVGEFTGYARSQETRDTARELDLCTVYDTAAEAVEGADLVILCVPVGAMGSVMKDIAPHLKSGATLSDVGSVKRAVIEAVEPYVPEDVHFVPAHPLAGTEHSGPRSGFAELFDNRWNIVVPASDYTDRDAVERLKTFWKGLGALVDEMDADHHDLVLAVTSHTPHLIAYTMVGVADDLARVTDTEVVNYSAAGFRDFTRIAASDPTMWRDVFLTNKDATLEILGRFTEELFALQRAIRTGDGDHLHDYFTRTRSIRRGIIEAGQDTDAPNFGRGPANT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NGF4</accession>
    <name>A0A1M5NGF4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ATP phosphoribosyltransferase regulatory subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1402</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88572.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900090.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1402"/>
    <dbReference type="EnsemblBacteria" id="SHG88572">
        <property type="protein sequence ID" value="SHG88572"/>
        <property type="gene ID" value="SAMN05444003_1402"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041715">
        <property type="entry name" value="HisRS-like_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004516">
        <property type="entry name" value="HisRS/HisZ"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43707">
        <property type="entry name" value="PTHR43707"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13393">
        <property type="entry name" value="tRNA-synt_His"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001549">
        <property type="entry name" value="His-tRNA_synth"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="tRNA-synt_His" evidence="1">
        <location>
            <begin position="12"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="domain" description="tRNA-synt_His" evidence="1">
        <location>
            <begin position="221"/>
            <end position="351"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13393"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG88572.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="361" mass="39262" checksum="F6F2E5AB91C09104" modified="2017-03-15" version="1">MTTTEQILCRAEALRAQFADLGGQVVNADVLQPAETLLDLYGEDIRARAYVTSDPLRGEIMLRPDFTVPVVQMHMETFAEPARYTYSGAVYRKQEHDASRANEYIQVGYEVFDGQDIAGADAEVFAAISKAVEGLPLRSATGDIGLLTAAISGLKTSDARKAALLRHLWRPRRFKSLLDRFCGRTPTPKFRTKLLAADDPFEGAWADISLRSRSEVNARIEALRDDAKTPAIGAEERDLLDAILGLQETLPNVMSALRDIAVDLPAIAGAVETLARRTEALASHGVDVNALRFEGSYGRTNMEYYDGFVFGFYSTVRADLPPIATGGRYDALTAQLGAGRAVPAVGAVIRPDLLLAVEEGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NGS3</accession>
    <name>A0A1M5NGS3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Molybdenum cofactor sulfurylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1409</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88720.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900095.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1409"/>
    <dbReference type="EnsemblBacteria" id="SHG88720">
        <property type="protein sequence ID" value="SHG88720"/>
        <property type="gene ID" value="SAMN05444003_1409"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014308">
        <property type="entry name" value="Xanthine_DH_XdhC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003777">
        <property type="entry name" value="XdhC_CoxI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027051">
        <property type="entry name" value="XdhC_Rossmann_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13478">
        <property type="entry name" value="XdhC_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02625">
        <property type="entry name" value="XdhC_CoxI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02964">
        <property type="entry name" value="xanthine_xdhC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="XdhC_CoxI" evidence="1">
        <location>
            <begin position="12"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="domain" description="XdhC_C" evidence="2">
        <location>
            <begin position="144"/>
            <end position="281"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02625"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG88720.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="297" mass="31723" checksum="7C987561894788ED" modified="2017-03-15" version="1">MTFDRDALNHAITKHGKVARVLVAKTAGSVPREAGTSMLVWVDGQSGTIGGGALEWEAAKQARDMSEGESRVKTIPLGPSLGQCCGGSVTLVTEVFSEGSVSDGEICARRVNAVAGDIPTADRLPILKNGWIVERVSQSTRPIWIYGAGHVGRALIATLSPLPEIEITWVDTSADRFPDHIPDNVNPLVAADPTQVLRHAPDTAEHLILTYSHEMDLALCHAVLSHRFRSVGLIGSATKWARFKRRLANLGHSADQIARIACPIGDPSLGKHPQEIAIGVAMAMLNTEERRGAMGTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NHK0</accession>
    <name>A0A1M5NHK0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Coenzyme A biosynthesis bifunctional protein CoaBC</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">DNA/pantothenate metabolism flavoprotein</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">Phosphopantothenoylcysteine synthetase/decarboxylase</fullName>
            <shortName evidence="3">PPCS-PPCDC</shortName>
        </alternativeName>
        <domain>
            <recommendedName>
                <fullName evidence="3">Phosphopantothenoylcysteine decarboxylase</fullName>
                <shortName evidence="3">PPC decarboxylase</shortName>
                <shortName evidence="3">PPC-DC</shortName>
                <ecNumber evidence="3">4.1.1.36</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="3">CoaC</fullName>
            </alternativeName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="3">Phosphopantothenate--cysteine ligase</fullName>
                <ecNumber evidence="3">6.3.2.5</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="3">CoaB</fullName>
            </alternativeName>
            <alternativeName>
                <fullName evidence="3">Phosphopantothenoylcysteine synthetase</fullName>
                <shortName evidence="3">PPC synthetase</shortName>
                <shortName evidence="3">PPC-S</shortName>
            </alternativeName>
        </domain>
    </protein>
    <gene>
        <name evidence="3" type="primary">coaBC</name>
        <name evidence="7" type="ORF">SAMN05444003_1423</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes two sequential steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine. In the second step the latter compound is decarboxylated to form 4'-phosphopantotheine.</text>
    </comment>
    <comment type="function">
        <text evidence="4">Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 4">
            <text>(R)-4'-phosphopantothenate + CTP + L-cysteine = CMP + diphosphate + H(+) + N-[(R)-4-phosphopantothenoyl]-L-cysteine</text>
            <dbReference type="Rhea" id="RHEA:19397"/>
            <dbReference type="ChEBI" id="CHEBI:10986"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:35235"/>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <dbReference type="ChEBI" id="CHEBI:59458"/>
            <dbReference type="ChEBI" id="CHEBI:60377"/>
            <dbReference type="EC" id="6.3.2.5"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 4">
            <text>H(+) + N-[(R)-4-phosphopantothenoyl]-L-cysteine = (R)-4'-phosphopantetheine + CO2</text>
            <dbReference type="Rhea" id="RHEA:16793"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:59458"/>
            <dbReference type="ChEBI" id="CHEBI:61723"/>
            <dbReference type="EC" id="4.1.1.36"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
        <text evidence="3">Binds 1 FMN per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3 4">Cofactor biosynthesis; coenzyme A biosynthesis; CoA from (R)-pantothenate: step 2/5.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 4">Cofactor biosynthesis; coenzyme A biosynthesis; CoA from (R)-pantothenate: step 3/5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 4">In the C-terminal section; belongs to the PPC synthetase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 4">In the N-terminal section; belongs to the HFCD (homo-oligomeric flavin containing Cys decarboxylase) superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.36" evidence="3"/>
    <dbReference type="EC" id="6.3.2.5" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89001.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900462.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1423"/>
    <dbReference type="EnsemblBacteria" id="SHG89001">
        <property type="protein sequence ID" value="SHG89001"/>
        <property type="gene ID" value="SAMN05444003_1423"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00241">
        <property type="reaction ID" value="UER00353"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004632">
        <property type="term" value="F:phosphopantothenate--cysteine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004633">
        <property type="term" value="F:phosphopantothenoylcysteine decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015937">
        <property type="term" value="P:coenzyme A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015941">
        <property type="term" value="P:pantothenate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1950">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02225">
        <property type="entry name" value="CoaBC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035929">
        <property type="entry name" value="CoaB-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005252">
        <property type="entry name" value="CoaBC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007085">
        <property type="entry name" value="DNA/pantothenate-metab_flavo_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036551">
        <property type="entry name" value="Flavin_trans-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003382">
        <property type="entry name" value="Flavoprotein"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04127">
        <property type="entry name" value="DFP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02441">
        <property type="entry name" value="Flavoprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102645">
        <property type="entry name" value="SSF102645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52507">
        <property type="entry name" value="SSF52507"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00521">
        <property type="entry name" value="coaBC_dfp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3 4" id="KW-0210">Decarboxylase</keyword>
    <keyword evidence="3 4" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="3 4" id="KW-0288">FMN</keyword>
    <keyword evidence="3 4 7" id="KW-0436">Ligase</keyword>
    <keyword evidence="2 3 4" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavoprotein" evidence="5">
        <location>
            <begin position="5"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="domain" description="DFP" evidence="6">
        <location>
            <begin position="184"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="region of interest" description="Phosphopantothenoylcysteine decarboxylase" evidence="3">
        <location>
            <begin position="1"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="region of interest" description="Phosphopantothenate--cysteine ligase" evidence="3">
        <location>
            <begin position="189"/>
            <end position="400"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="3">
        <location>
            <position position="157"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="276"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="286"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="303"/>
            <end position="306"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="323"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="337"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="341"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU364078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG89001.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="400" mass="41884" checksum="C43C441F8172300A" modified="2017-03-15" version="1">MLANKHILLIIGGGIAAYKSLDLIRKFRERGTKVTAVLTKAGSEFVTPLSVSALTGEKVFEDLFNLTDEAEMGHIELSRAADLIVVAPATADLMSKMANGGANDLASTVLLATDKRVLIAPSMNVRMWTHAATQRNLATLQSDEILAVGPKEGDMACGEYGPGRMAEPLEIVAAAEAALGDGPLKGRCAIVTSGPTHEPIDPVRYIANRSSGAQGTAIARALMSLGADVTFVTGPASHPVPSGVNVVPVQTASEMLAAVEDALPADVAIFAAAVADWHVANAGDSKIKKDGKGLPSIELAENPDILAIVSQLKKNRPELVIGFAAETDDVIENATSKRKRKACDWILANDVSPETGIMGGSENAVTLIHNSGADVWPRMTKDQVATRLAHAIVDHLGATE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NJG1</accession>
    <name>A0A1M5NJG1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">(R)-ethylmalonyl-CoA mutase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1457</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>adenosylcob(III)alamin</name>
            <dbReference type="ChEBI" id="CHEBI:18408"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89724.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900139.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1457"/>
    <dbReference type="EnsemblBacteria" id="SHG89724">
        <property type="protein sequence ID" value="SHG89724"/>
        <property type="gene ID" value="SAMN05444003_1457"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031419">
        <property type="term" value="F:cobalamin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004494">
        <property type="term" value="F:methylmalonyl-CoA mutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006159">
        <property type="entry name" value="Acid_CoA_mut_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016176">
        <property type="entry name" value="Cbl-dep_enz_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006158">
        <property type="entry name" value="Cobalamin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036724">
        <property type="entry name" value="Cobalamin-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006099">
        <property type="entry name" value="MeMalonylCoA_mutase_a/b_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006098">
        <property type="entry name" value="MMCoA_mutase_a_cat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02310">
        <property type="entry name" value="B12-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01642">
        <property type="entry name" value="MM_CoA_mutase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51703">
        <property type="entry name" value="SSF51703"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52242">
        <property type="entry name" value="SSF52242"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00640">
        <property type="entry name" value="acid_CoA_mut_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00641">
        <property type="entry name" value="acid_CoA_mut_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51332">
        <property type="entry name" value="B12_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0846">Cobalamin</keyword>
    <keyword evidence="5" id="KW-0170">Cobalt</keyword>
    <keyword evidence="4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="B12-binding" evidence="6">
        <location>
            <begin position="521"/>
            <end position="650"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022628"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG89724.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="655" mass="71448" checksum="DCA3F8E88414F5EF" modified="2017-03-15" version="1">MSQTQKDRPWLFRTYAGHSTAAASNALYRGNLAKGQTGLSVAFDLPTQTGYDSDHELSKGEVGKVGVPVCHLGDMRTLFNDIPLEQMNTSMTINATAPWLLSLYIAVAEKQGADVSKLQGTVQNDIIKEYLSRGTYICPPEPSLRMITDVAAYTREHLPKWNPMNVCSYHLQEAGATPEQELAFALATATAVLDDLKNKVPAEHFPAMVGRISFFVNAGIRFVTELCKMRAFVELWDEICQERYGVEDPKFRRFRYGVQVNSLGLTEQQPENNVYRILIEMLAVTLSKKARARAVQLPAWNEALGLPRPWDQQWSLRMQQILAYETDLLEHDDLFDENPAIDRKVNALKEGARAELKQIDGMGGAVGAIAYMKGRLVESNSNRIGGIETGDTTVVGVNKWQAGETSPLTAGDDAIMVADAEAEADQLKRLAAWKSNRDAAAVKAALADLRDAAKDGSNIMIPSIQCAKVGVTTGEWADVVRAAFGQYRAPTGVSANPSNRTEGLDDIREQVDLVSQTLGRRLKFLVGKPGLDGHSNGAEQIAARARDCGMDITYEGIRLTPDELVDAARNDEAHVIGLSILSGSHIPLIAAFMDKMRAAGLGHIPVIAGGIIPDDDAEKLRAMGVAKVYTPKDFELNKIMTDIVTLVDPSAIAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NL47</accession>
    <name>A0A1M5NL47_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1479</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90251.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG90251">
        <property type="protein sequence ID" value="SHG90251"/>
        <property type="gene ID" value="SAMN05444003_1479"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009912619" evidence="1">
        <location>
            <begin position="27"/>
            <end position="216"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG90251.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="216" mass="23756" checksum="69B234EC589FDE9A" modified="2017-03-15" version="1">MALLRVTHTTIYALALAVTAPSTALADERYAVLLVNDICLNSELSHQDRIDEVDKRGWTRSGGNGLQFAASVAAAFEELAPELSEQLNSDLRSEEWSEHLWREGNLVRSTAAIWEQPTSFLAPNGAHLILTKTSAGPHICIFLAPEPRSLIFGRFGVVGRTNYVDGNAIFRGALHDDGSLLEYREINSKTSKKLFGSNGYRFLALVLLNKTTEVPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NU99</accession>
    <name>A0A1M5NU99_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">tRNA pseudouridine synthase A</fullName>
            <ecNumber evidence="4">5.4.99.12</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">tRNA pseudouridine(38-40) synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">tRNA pseudouridylate synthase I</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">tRNA-uridine isomerase I</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">truA</name>
        <name evidence="9" type="ORF">SAMN05444003_1597</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4 7">
            <text>uridine(38/39/40) in tRNA = pseudouridine(38/39/40) in tRNA</text>
            <dbReference type="Rhea" id="RHEA:22376"/>
            <dbReference type="Rhea" id="RHEA-COMP:10085"/>
            <dbReference type="Rhea" id="RHEA-COMP:10087"/>
            <dbReference type="ChEBI" id="CHEBI:65314"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="EC" id="5.4.99.12"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4 7">Belongs to the tRNA pseudouridine synthase TruA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.12" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900263.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1597"/>
    <dbReference type="EnsemblBacteria" id="SHG93102">
        <property type="protein sequence ID" value="SHG93102"/>
        <property type="gene ID" value="SAMN05444003_1597"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106029">
        <property type="term" value="F:tRNA pseudouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031119">
        <property type="term" value="P:tRNA pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02570">
        <property type="entry name" value="PseudoU_synth_EcTruA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.580">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.660">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00171">
        <property type="entry name" value="TruA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020103">
        <property type="entry name" value="PsdUridine_synth_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001406">
        <property type="entry name" value="PsdUridine_synth_TruA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020097">
        <property type="entry name" value="PsdUridine_synth_TruA_a/b_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020095">
        <property type="entry name" value="PsdUridine_synth_TruA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020094">
        <property type="entry name" value="TruA/RsuA/RluB/E/F_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11142">
        <property type="entry name" value="PTHR11142"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01416">
        <property type="entry name" value="PseudoU_synth_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001430">
        <property type="entry name" value="tRNA_psdUrid_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55120">
        <property type="entry name" value="SSF55120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00071">
        <property type="entry name" value="hisT_truA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4 7" id="KW-0413">Isomerase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4 7" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="PseudoU_synth_1" evidence="8">
        <location>
            <begin position="9"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="domain" description="PseudoU_synth_1" evidence="8">
        <location>
            <begin position="145"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="4 5">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4 6">
        <location>
            <position position="111"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009375"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR001430-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR001430-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003792"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG93102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="255" mass="28411" checksum="F4BA250DF2AD907F" modified="2017-03-15" version="1">MPRFALKVEYNGLPFAGWQRQADQPTVQGAIEAALAKLEPGEHTIAAAGRTDAGVHATGQVAHCDLAKNWEPFRLMEALNYHLKPDPVAIVDCAEVSDEWHARFSAVERRYLFKLICRRAPLTFDKGTMWRINHALDLDAMQEGANHLLGRHDFTTFRSSICQADSPVRTLDTLDIERSELDNGTLFQFHVRARSFLHNQVRSFVGTLERVGAGAWEPDDVRAALEAKERSACGPVCPPEGLYLAAVTYPVDPFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NVR7</accession>
    <name>A0A1M5NVR7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Energy-dependent translational throttle protein EttA</fullName>
            <ecNumber evidence="7">3.6.1.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Translational regulatory factor EttA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">ettA</name>
        <name evidence="11" type="ORF">SAMN05444003_1616</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">A translation factor that gates the progression of the 70S ribosomal initiation complex (IC, containing tRNA(fMet) in the P-site) into the translation elongation cycle by using a mechanism sensitive to the ATP/ADP ratio. Binds to the 70S ribosome E-site where it modulates the state of the translating ribosome during subunit translocation. ATP hydrolysis probably frees it from the ribosome, which can enter the elongation phase.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>ATP + H2O = ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="7">Monomer. Probably contacts ribosomal proteins L1, L5, L33 and S7, the 16S and 23S rRNA and the P-site containing tRNA(fMet).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="7">Associates with ribosomes and polysomes.</text>
    </comment>
    <comment type="domain">
        <text evidence="7">The P-site tRNA interaction motif (PtIM domain) probably interacts with the P-site tRNA(fMet) as well as the 23S rRNA.</text>
    </comment>
    <comment type="domain">
        <text evidence="7">The arm domain is inserted in the first ABC transporter domain. Probably contacts ribosomal protein L1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the ABC transporter superfamily. ABCF family. Translational throttle EttA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.-" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93545.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1616"/>
    <dbReference type="EnsemblBacteria" id="SHG93545">
        <property type="protein sequence ID" value="SHG93545"/>
        <property type="gene ID" value="SAMN05444003_1616"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043022">
        <property type="term" value="F:ribosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045900">
        <property type="term" value="P:negative regulation of translational elongation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00847">
        <property type="entry name" value="EttA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032781">
        <property type="entry name" value="ABC_tran_Xtn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022374">
        <property type="entry name" value="EttA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43858">
        <property type="entry name" value="PTHR43858"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12848">
        <property type="entry name" value="ABC_tran_Xtn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03719">
        <property type="entry name" value="ABC_ABC_ChvD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 7 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0677">Repeat</keyword>
    <keyword evidence="7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 7" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="6 7" id="KW-0810">Translation regulation</keyword>
    <keyword evidence="2 7" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="ABC transporter" evidence="10">
        <location>
            <begin position="32"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="10">
        <location>
            <begin position="344"/>
            <end position="561"/>
        </location>
    </feature>
    <feature type="region of interest" description="PtIM" evidence="7">
        <location>
            <begin position="262"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="9">
        <location>
            <begin position="265"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7 8">
        <location>
            <begin position="65"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7 8">
        <location>
            <begin position="376"/>
            <end position="383"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005868"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG93545.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="575" mass="63982" checksum="60960B675CECBD8B" modified="2017-03-15" version="1">MEQIAAERAEGYDTANLRSEGRDHMASYQFVYFMDGVSKTYPGGKKVFENIRLNFLPGVKIGVVGVNGTGKSTLMRIMAGQDKEFQGEAWAAEGAKVGYLPQEPELDANLSVRENVMLGVAEKKGILDRYNELAMNYSEETADEMARLQDEIDAQNLWDLDAQIDVSMEALRCPPDDANVETLSGGEKRRVALCKLLLEAPDMLLLDEPTNHLDAETIAWLQQHLIDYKGTILIVTHDRYFLDAITGWILELDRGAGIPHEGNYSSWLEAKAKRLEQEAKEDKSKQRTLERELEWMRQGAKARQAKSKARIQAYNELANQSEREKVGRAQIIIPNGPRLGSKVIEVDSLKKAMGDKLLVEDLSFDLPPGGIVGVIGPNGAGKSTLFSMLTGQLDPDEGSVTYGDTVQLAYVDQSRDALNAESTVWEEITGGAEIIELGDAQMNSRAYCSAFNFKGGDQQKKVGVLSGGERNRVHMAKLLKSGGNVLLLDEPTNDLDVETLRALEDALTTFAGCAVVISHDRFFLDRICTHILAFEGDAHVEWFQGNFEDYEEDKKRRLGADAMEPKRMKHKKFVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NW81</accession>
    <name>A0A1M5NW81_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Probable multidrug resistance protein NorM</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1625</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Multidrug efflux pump.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900288.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1625"/>
    <dbReference type="EnsemblBacteria" id="SHG93762">
        <property type="protein sequence ID" value="SHG93762"/>
        <property type="gene ID" value="SAMN05444003_1625"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042910">
        <property type="term" value="F:xenobiotic transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002528">
        <property type="entry name" value="MATE_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01554">
        <property type="entry name" value="MatE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006603">
        <property type="entry name" value="DinF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00797">
        <property type="entry name" value="matE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="20"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="48"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="93"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="135"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="168"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="193"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="235"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="277"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="316"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="345"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="389"/>
            <end position="407"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="413"/>
            <end position="431"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00020268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG93762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="460" mass="48612" checksum="576A4DE96FC831B9" modified="2017-03-15" version="1">MSEAKFLEGSLFKHISVMSLTASFGLMAVFLVDFVDMIFISMLGKAELAAAIGYAGAILFFTASFSIGMSIAAGALVARALGAGNEDLAKRQATNALVIGVILGSLFVLAVWIYAYELTALLGAEGETLDLAVNYLRIIVPSLPILMIGMVGSAILRAHGDARRAMMATIYGGLVNAVLDPILIFGLDLELTGAAIASVCARITIAVTAIVPVIKVYQGINRPSFSTFVPDISPVMAIAFPAILTQLATPIGSAYVTRTMATFGEEAVAGMAIVGRMTPVAFGVLFALSGAIGPIIGQNAGAGKDDRVRAAFRDGIYFTAGVVVLVSIILYLLRPFFVTLFALDGLALTLVFLFAGPLSLTFFFNGVIFVGNAAFNNLNHPYYSTWINWGRHTVGTIPFVMLGASLAGAPGVLIGQAAGGLVFAAIAYVLAMRVMEKGETHEATEFEREGRLHRLLHNRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NWB6</accession>
    <name>A0A1M5NWB6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">RNA polymerase sigma-70 factor, ECF subfamily</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1604</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93273.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900271.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1604"/>
    <dbReference type="EnsemblBacteria" id="SHG93273">
        <property type="protein sequence ID" value="SHG93273"/>
        <property type="gene ID" value="SAMN05444003_1604"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="2">
        <location>
            <begin position="35"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="3">
        <location>
            <begin position="130"/>
            <end position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG93273.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="192" mass="21174" checksum="96D604E8831DFC4C" modified="2017-03-15" version="1">MKSELASNRAKERALEAYLLSSAKLGNERAMAQLVRLLSPVMMRHATRLTGDTEQAKDMVQAAWADIFRSLDTVKNPEAIRAFALQIVTRKVAAVIRAKQKERSLKTALTDEHQDVGQPLGEIAADAYSVRKAINQLSKDHQAILALFYLEDMTTSEVAAALNIPVGTVKTRLMHARSNLRAILEGSNHGKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NX05</accession>
    <name>A0A1M5NX05_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">SseB protein N-terminal domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1640</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG94106.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900302.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1640"/>
    <dbReference type="EnsemblBacteria" id="SHG94106">
        <property type="protein sequence ID" value="SHG94106"/>
        <property type="gene ID" value="SAMN05444003_1640"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009839">
        <property type="entry name" value="SseB_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07179">
        <property type="entry name" value="SseB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SseB" evidence="2">
        <location>
            <begin position="7"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="239"/>
            <end position="260"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07179"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG94106.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="260" mass="27624" checksum="17D2F7229D5E2A15" modified="2017-03-15" version="1">MAETEIDKAHANMSANPDDDAARLRFYERIADSELYLLLAGEPDGDQVSPELFDVKDQKFALVFDREERLSSFVGRAAPYAGLPGRGLIQMLDGQDVGLALNLEVAPSAMLIPPDAVDWLAETLRNAPEETQGTLSELRSPGSLPEEVVTGLDRKLAIAAGLASHAYLAGAVYKEGGVGHILAFVDARDGSEKALAHAAGEALIFSGIEAGTIDVMFVSSGDDVADILRRVGLRFDLPVSEQPTMPGAPGMDPTKPPKLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PJI5</accession>
    <name>A0A1M5PJI5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1 2">Peptidyl-tRNA hydrolase</fullName>
            <shortName evidence="1">PTH</shortName>
            <ecNumber evidence="1 2">3.1.1.29</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">pth</name>
        <name evidence="5" type="ORF">SAMN05444003_1677</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>an N-acyl-L-alpha-aminoacyl-tRNA + H2O = a tRNA + an N-acyl-L-amino acid + H(+)</text>
            <dbReference type="Rhea" id="RHEA:54448"/>
            <dbReference type="Rhea" id="RHEA-COMP:10123"/>
            <dbReference type="Rhea" id="RHEA-COMP:13883"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:59874"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:138191"/>
            <dbReference type="EC" id="3.1.1.29"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the PTH family.</text>
    </comment>
    <dbReference type="EC" id="3.1.1.29" evidence="1 2"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH01891.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900499.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1677"/>
    <dbReference type="EnsemblBacteria" id="SHH01891">
        <property type="protein sequence ID" value="SHH01891"/>
        <property type="gene ID" value="SAMN05444003_1677"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004045">
        <property type="term" value="F:aminoacyl-tRNA hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00462">
        <property type="entry name" value="PTH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1470">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00083">
        <property type="entry name" value="Pept_tRNA_hydro_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001328">
        <property type="entry name" value="Pept_tRNA_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018171">
        <property type="entry name" value="Pept_tRNA_hydro_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036416">
        <property type="entry name" value="Pept_tRNA_hydro_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR17224">
        <property type="entry name" value="PTHR17224"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01195">
        <property type="entry name" value="Pept_tRNA_hydro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53178">
        <property type="entry name" value="SSF53178"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00447">
        <property type="entry name" value="pth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01195">
        <property type="entry name" value="PEPT_TRNA_HYDROL_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01196">
        <property type="entry name" value="PEPT_TRNA_HYDROL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 2 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="189"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="198"/>
            <end position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00083"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU000673"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU004320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH01891.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="224" mass="24433" checksum="BE6B404251C648EA" modified="2017-03-15" version="1">MKLLVGLGNPGAKYAQNRHNIGFMAMDQIASDHGFGPWRSKFQGVISEGRFGSDKVILLKPETFMNLSGQSVGEAMRFHKLEPADVIVFHDELDLAPRKVRLKTGGGHAGHNGLRSIHGHIGADYDRVRLGIGHPGHKDAVPGYVLRDFPKADAEWLDDVLRGIGDGAPELVAGNGDKFLNAIALRVAPARSSKSKPKPQAPRVEEPVEEDARSPLQKLVDKFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PK57</accession>
    <name>A0A1M5PK57_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Chloramphenicol O-acetyltransferase type A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1691</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02174.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900864.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH02174">
        <property type="protein sequence ID" value="SHH02174"/>
        <property type="gene ID" value="SAMN05444003_1691"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008811">
        <property type="term" value="F:chloramphenicol O-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.559.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023213">
        <property type="entry name" value="CAT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001707">
        <property type="entry name" value="Cmp_AcTrfase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38474">
        <property type="entry name" value="PTHR38474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00302">
        <property type="entry name" value="CAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01059">
        <property type="entry name" value="CAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH02174.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="211" mass="23760" checksum="765DCFDF12C3E521" modified="2017-03-15" version="1">MAEVIIDQENWARKDQFDLFRSYERPHFAVTKRLNVNQLMTVQKPKGTSPYRACLYAIGAGIHAVDELKMRFRDDIVVRHDAIDLSMTVPKQDGGFAYGYVPFHPSFAEFDRISSALIEEASKGALAPNTGQRDDLAYLSCMPWLDYSSINNAMPHAGDCIPRVSWGKIVKDPDGIWRMSMTLEVHHALVDGEHVGTYFEHVQTALDSISA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PKB1</accession>
    <name>A0A1M5PKB1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">3-phosphoshikimate 1-carboxyvinyltransferase</fullName>
            <ecNumber evidence="7">2.5.1.19</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">5-enolpyruvylshikimate-3-phosphate synthase</fullName>
            <shortName evidence="7">EPSP synthase</shortName>
            <shortName evidence="7">EPSPS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">aroA</name>
        <name evidence="10" type="ORF">SAMN05444003_1695</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>3-phosphoshikimate + phosphoenolpyruvate = 5-O-(1-carboxyvinyl)-3-phosphoshikimate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:21256"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57701"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="ChEBI" id="CHEBI:145989"/>
            <dbReference type="EC" id="2.5.1.19"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 7">Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 6/7.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the EPSP synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.19" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02256.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900511.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1695"/>
    <dbReference type="EnsemblBacteria" id="SHH02256">
        <property type="protein sequence ID" value="SHH02256"/>
        <property type="gene ID" value="SAMN05444003_1695"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00053">
        <property type="reaction ID" value="UER00089"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003866">
        <property type="term" value="F:3-phosphoshikimate 1-carboxyvinyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009073">
        <property type="term" value="P:aromatic amino acid family biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008652">
        <property type="term" value="P:cellular amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009423">
        <property type="term" value="P:chorismate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd01556">
        <property type="entry name" value="EPSP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.65.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00210">
        <property type="entry name" value="EPSP_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001986">
        <property type="entry name" value="Enolpyruvate_Tfrase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036968">
        <property type="entry name" value="Enolpyruvate_Tfrase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006264">
        <property type="entry name" value="EPSP_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023193">
        <property type="entry name" value="EPSP_synthase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013792">
        <property type="entry name" value="RNA3'P_cycl/enolpyr_Trfase_a/b"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00275">
        <property type="entry name" value="EPSP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000505">
        <property type="entry name" value="EPSPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55205">
        <property type="entry name" value="SSF55205"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01356">
        <property type="entry name" value="aroA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00104">
        <property type="entry name" value="EPSP_SYNTHASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00885">
        <property type="entry name" value="EPSP_SYNTHASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="6 7" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="EPSP_synthase" evidence="9">
        <location>
            <begin position="14"/>
            <end position="436"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="region of interest" description="Shikimate-3-phosphate binding" evidence="7">
        <location>
            <begin position="28"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="region of interest" description="Phosphoenolpyruvate" evidence="7">
        <location>
            <begin position="99"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="7">
        <location>
            <position position="327"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="7">
        <location>
            <position position="355"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="33"/>
        </location>
        <ligand>
            <name>3-phosphoshikimate</name>
            <dbReference type="ChEBI" id="CHEBI:145989"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="129"/>
        </location>
        <ligand>
            <name>phosphoenolpyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="354"/>
        </location>
        <ligand>
            <name>3-phosphoshikimate</name>
            <dbReference type="ChEBI" id="CHEBI:145989"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="358"/>
        </location>
        <ligand>
            <name>phosphoenolpyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="403"/>
        </location>
        <ligand>
            <name>phosphoenolpyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001901"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004811"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009948"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00210"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00275"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH02256.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="450" mass="46902" checksum="169CBBB56DF64957" modified="2017-03-15" version="1">MSGHGTPIPMTSRKAGPLKGDAHVPGDKSISHRSLILGAMAVGETRITGLLEGEDVLDTAKAMRSFGATVTDHGSGEWSVHGVGVGGFMEPDHVIDCGNSGTGVRLIMGAAATTPITVTYTGDASLNGRPMGRVTDPLALFGSQAFGREGGRLPMTLVGAADPVPVVYEVPVPSAQVKSAVLLAGLNAPGQTVVIEKEATRDHTERMLQGFGAELSVEENEDGRRITLTGQPELQPQTIVVPRDPSSAAFPVCAAIITPGSDVLVPNIGLNPTRAGLFTTLQEMGADLVYENMREEGGEPVADLRAKFSPNLKGIAVPPARAASMIDEYPVLSVVAAFADGVTDMQGVKELRVKESDRIDAMAKGLRAAGVTVDEGDDWWTVTGLGQGNVPGGVRVASQLDHRIAMAFMVMGMATEKPMTVDDGSPIATSFPIFEDLMGSLGANITRANS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PQ11</accession>
    <name>A0A1M5PQ11_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="10">D-alanyl-D-alanine carboxypeptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_1771</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 8">Belongs to the peptidase S11 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03760.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1771"/>
    <dbReference type="EnsemblBacteria" id="SHH03760">
        <property type="protein sequence ID" value="SHH03760"/>
        <property type="gene ID" value="SAMN05444003_1771"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009002">
        <property type="term" value="F:serine-type D-Ala-D-Ala carboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018044">
        <property type="entry name" value="Peptidase_S11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001967">
        <property type="entry name" value="Peptidase_S11_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00768">
        <property type="entry name" value="Peptidase_S11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00725">
        <property type="entry name" value="DADACBPTASE1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0121">Carboxypeptidase</keyword>
    <keyword evidence="3" id="KW-0133">Cell shape</keyword>
    <keyword evidence="5" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="10" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="10" id="KW-0645">Protease</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Peptidase_S11" evidence="9">
        <location>
            <begin position="35"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-ester intermediate" evidence="6">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="6">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="120"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="223"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007164"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR618044-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR618044-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH03760.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="482" mass="51908" checksum="B61880DE1F8CD006" modified="2017-03-15" version="1">MISRLGHAAHSGLVLFILLLLLVFAPSKGVPAPYAAMVMDARTGEVLHSRNADTRLHPASLTKMMTLYIAFQAVQRGEIGLDTEVTISSLAASEPPSKLGLRAGQKIRLRYLLRAAAVKSANDAATAIGEAISGSEEAFATRMNRTAAAMGMRNTTFRNAHGLTQRGHMSTARDMSILGRHVIYDFPQYYNLFSRRTADAGVRTVRHTNTRWLNSYEGGDGIKTGYTRAAGFNLTASAQRGQERIIATMFGGSSTAARNRRVTELMDMGFSRAPSRATIRRPQPPGASIAQEAEIISSNNSRPANGSKTIRVTGIISRSLRPVARPEQAAPAEELLLAVDTNVIAVALAEAVETAAVAPSTPALEQSVVPQARPSKVLAQITQAANPQPQPDVQEIVTRISTSGGRHWGINVGRYNTRYEAERVLLKVALNEMSSLDGSLRRVVPRSGGFDANFMGLSREGADLACRRLQARGTSCFMIGTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PR22</accession>
    <name>A0A1M5PR22_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 8">Methionyl-tRNA formyltransferase</fullName>
            <ecNumber evidence="4 8">2.1.2.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">fmt</name>
        <name evidence="11" type="ORF">SAMN05444003_1794</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 8">Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>(6S)-10-formyltetrahydrofolate + L-methionyl-tRNA(fMet) = (6S)-5,6,7,8-tetrahydrofolate + H(+) + N-formyl-L-methionyl-tRNA(fMet)</text>
            <dbReference type="Rhea" id="RHEA:24380"/>
            <dbReference type="Rhea" id="RHEA-COMP:9952"/>
            <dbReference type="Rhea" id="RHEA-COMP:9953"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="ChEBI" id="CHEBI:57454"/>
            <dbReference type="ChEBI" id="CHEBI:78530"/>
            <dbReference type="ChEBI" id="CHEBI:78844"/>
            <dbReference type="EC" id="2.1.2.9"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the Fmt family.</text>
    </comment>
    <dbReference type="EC" id="2.1.2.9" evidence="4 8"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04204.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900594.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1794"/>
    <dbReference type="EnsemblBacteria" id="SHH04204">
        <property type="protein sequence ID" value="SHH04204"/>
        <property type="gene ID" value="SAMN05444003_1794"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004479">
        <property type="term" value="F:methionyl-tRNA formyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd08646">
        <property type="entry name" value="FMT_core_Met-tRNA-FMT_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd08704">
        <property type="entry name" value="Met_tRNA_FMT_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00182">
        <property type="entry name" value="Formyl_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005794">
        <property type="entry name" value="Fmt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005793">
        <property type="entry name" value="Formyl_trans_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002376">
        <property type="entry name" value="Formyl_transf_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036477">
        <property type="entry name" value="Formyl_transf_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011034">
        <property type="entry name" value="Formyl_transferase-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001555">
        <property type="entry name" value="GART_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044135">
        <property type="entry name" value="Met-tRNA-FMT_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041711">
        <property type="entry name" value="Met-tRNA-FMT_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02911">
        <property type="entry name" value="Formyl_trans_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00551">
        <property type="entry name" value="Formyl_trans_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50486">
        <property type="entry name" value="SSF50486"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53328">
        <property type="entry name" value="SSF53328"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00460">
        <property type="entry name" value="fmt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00373">
        <property type="entry name" value="GART"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Formyl_trans_N" evidence="9">
        <location>
            <begin position="1"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="domain" description="Formyl_trans_C" evidence="10">
        <location>
            <begin position="201"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="region of interest" description="Tetrahydrofolate (THF) binding" evidence="8">
        <location>
            <begin position="109"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00016014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00182"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02911"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH04204.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="299" mass="31873" checksum="6CAD9905DC9191E4" modified="2017-03-15" version="1">MRVIFMGSPVFSVPVLNALVDAGHEVVAVYSQPPRPAGRGKKERPGPVHARALELGLPVFTPVSLKSGEALEVFQSHKADVAVVVAYGLLLPQVILDAPKHGCLNIHASLLPRWRGAAPIHRAIMAGDQKTGVCIMQMEAGLDTGPVLLQREVAIESEETTGQLHDRLSELGAVAIVEALGRLDKLEPAVQPEDGVTYAAKIDKSEARVDWSRTAPEVDRLIRGLSPFPGAWCMVGEERVKFLGCRVVHGQGDPGQVLGGFTIACGDGAVEITRAQRAGKRAMDSVEILQGLDLGKSIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PSA4</accession>
    <name>A0A1M5PSA4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PhoP regulatory network protein YrbL</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1820</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04724.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH04724">
        <property type="protein sequence ID" value="SHH04724"/>
        <property type="gene ID" value="SAMN05444003_1820"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019647">
        <property type="entry name" value="PhoP_reg_network_YrbL"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10707">
        <property type="entry name" value="YrbL-PhoP_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH04724.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="228" mass="26452" checksum="81B17B98CE514424" modified="2017-03-15" version="1">MTLDDPITLNKNKLVAEGVERRIYVHPNDPTRLIKIPKIKSDDHYKRWTFGDLTKRFFPSTRTRSITKQHEEYQRQLRESQQSAASLPVSLFYGFAPTNLGTGEIFERVTNDSGENAPTLRDVHDQGDFDINKLNTFVEHLYSLAICVSDLNPANFVYGYRHTEAGQKSPNKSWVLIDGYGDRFAIPIRTLNATTRRYSIDDAFKRSRKLPNLEWNAKERRFQRPTLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PSE6</accession>
    <name>A0A1M5PSE6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1817</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04662.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900614.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH04662">
        <property type="protein sequence ID" value="SHH04662"/>
        <property type="gene ID" value="SAMN05444003_1817"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="9"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH04662.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="149" mass="16455" checksum="E2A9A36224EBC1A6" modified="2017-03-15" version="1">MIIVEQTDPHHPQATALLRQSHALMESLFPPEDNFYLDIDQLCAENIHFFTARIGDDILGTGALANHGTYGEVKSMFVDDAARGKGIADALLRQIEDTARAEGLTSLKLETGNVLHAAHKLYRRHGFADCGPFGDYEQANSSIFMEKPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PYH4</accession>
    <name>A0A1M5PYH4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Phospholipid-binding lipoprotein MlaA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1913</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the MlaA family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06561.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900695.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1913"/>
    <dbReference type="EnsemblBacteria" id="SHH06561">
        <property type="protein sequence ID" value="SHH06561"/>
        <property type="gene ID" value="SAMN05444003_1913"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007428">
        <property type="entry name" value="MlaA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30035">
        <property type="entry name" value="PTHR30035"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04333">
        <property type="entry name" value="MlaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01805">
        <property type="entry name" value="VACJLIPOPROT"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013223179" evidence="3">
        <location>
            <begin position="25"/>
            <end position="249"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH06561.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="249" mass="27017" checksum="83C38020096F1D4C" modified="2017-03-15" version="1">MLTKLGLNLRYPFVFLGFFSVVTACTPAPDGVTVFDPYEEQNRQVHEFNKSVFNSFFGSGGSDTEIPPEIADTVVNFADNISMPGMALNGLLQGNFEAALTNAARFVVNTTFGIGGIADLATELGLEEQETDFGETLAIWGVPEGAYLELPILGPSTERAFAGRIVDSLIDPLDEVGFAFQSDYSLAATIAKRIVRGSQLSGTIDSVLSESADSYAQQRLIYLQNRRFELGTTPEEEAVDPYDELFGDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PZC9</accession>
    <name>A0A1M5PZC9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phospholipid transport system substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1912</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06553.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900694.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1912"/>
    <dbReference type="EnsemblBacteria" id="SHH06553">
        <property type="protein sequence ID" value="SHH06553"/>
        <property type="gene ID" value="SAMN05444003_1912"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.450.710">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008869">
        <property type="entry name" value="MlaC/ttg2D"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042245">
        <property type="entry name" value="Tgt2/MlaC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36573">
        <property type="entry name" value="PTHR36573"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05494">
        <property type="entry name" value="MlaC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013336564" evidence="1">
        <location>
            <begin position="22"/>
            <end position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH06553.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="192" mass="21264" checksum="855270F91BC787B5" modified="2017-03-15" version="1">MFRRQFLVGTVALTLPTSSLAVSPAAAQSMVEDLVDDVNAVIASGASEQAMIDQFGQILNRYADVPTIARYCLGVDARRATASQMAQYTDAFQDYIASKYGRRFREFVGGEVRVVGSEAVKSWVEVETTVLLRGRSPLQMDWHVSNRSGRNAFFNFIIEGVNMLLTEREEIGAMLDRRRGSIDALISDMKAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q411</accession>
    <name>A0A1M5Q411_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2035</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08844.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH08844">
        <property type="protein sequence ID" value="SHH08844"/>
        <property type="gene ID" value="SAMN05444003_2035"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012206353" evidence="1">
        <location>
            <begin position="24"/>
            <end position="216"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH08844.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="216" mass="24259" checksum="1FA641861FCA759D" modified="2017-03-15" version="1">MSSRKCFFFFGSLVLSLAKPASAQEATLYEEAALSQRLPTAEERLRQENECQIEYDYQSSNALVALSAAYQGRVVNLHPQRGLLIYWIAYEGPEKGTFAISSSGELPLGGIAGFDICEFMTLMTTRPVQNRGDVLRYATLRLRSNLDLSVDYPTANAVIDEKGLLAVTPASKYVEIYADEPNELLDWIEENKQQIDWLRIPFPIIGLSDRVLLPMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q579</accession>
    <name>A0A1M5Q579_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 10">Beta sliding clamp</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">SAMN05444003_2041</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication as well as for processivity of DNA replication.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Forms a ring-shaped head-to-tail homodimer around DNA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 10">Belongs to the beta sliding clamp family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08961.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900799.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2041"/>
    <dbReference type="EnsemblBacteria" id="SHH08961">
        <property type="protein sequence ID" value="SHH08961"/>
        <property type="gene ID" value="SAMN05444003_2041"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009360">
        <property type="term" value="C:DNA polymerase III complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008408">
        <property type="term" value="F:3'-5' exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00140">
        <property type="entry name" value="beta_clamp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001001">
        <property type="entry name" value="DNA_polIII_beta"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022635">
        <property type="entry name" value="DNA_polIII_beta_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022637">
        <property type="entry name" value="DNA_polIII_beta_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022634">
        <property type="entry name" value="DNA_polIII_beta_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30478">
        <property type="entry name" value="PTHR30478"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00712">
        <property type="entry name" value="DNA_pol3_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02767">
        <property type="entry name" value="DNA_pol3_beta_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02768">
        <property type="entry name" value="DNA_pol3_beta_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000804">
        <property type="entry name" value="DNA_pol_III_b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00480">
        <property type="entry name" value="POL3Bc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00663">
        <property type="entry name" value="dnan"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 10" id="KW-0235">DNA replication</keyword>
    <keyword evidence="9" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8 10" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="6 10" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DNA_pol3_beta" evidence="11">
        <location>
            <begin position="1"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="DNA_pol3_beta_2" evidence="12">
        <location>
            <begin position="135"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="domain" description="DNA_pol3_beta_3" evidence="13">
        <location>
            <begin position="252"/>
            <end position="371"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00021035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRNR" id="PIRNR000804"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00712"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF02767"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF02768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="SHH08961.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="372" mass="40300" checksum="F2F4454A6BA4190E" modified="2017-03-15" version="1">MKLSIERASLLKAVAQAQSVVERRNTIPILANVLIEAEGDTVQFRATDLDIEVVDRAPAQVERAGATTVSAVTLNEIVRKLPDGALVTLTEDGASGRLTIEAGRSNFSLATLPKEDFPVMASSEYAANFSAPAPMLRRLFDKSKFAISTEETRYYLNGVYMHIADADGGKVLRCVATDGHRLARIDADLPDGAADMAGVIVPRKTVGELRKLLDDDETQIAVSVSETKVRFATPDITLTSKVIDGTFPDYTRVIPQGNTRKLEVDASEFAKAVDRVATVSSERSRAVKLALEEDKLVLSVNAPDSGAAEEELAVAYGDERLDIGFNAKYLLEIASQVDRENAVFLFNSSGDPTLMREGNDTSAVYVVMPMRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q583</accession>
    <name>A0A1M5Q583_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2025</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08663.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900785.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH08663">
        <property type="protein sequence ID" value="SHH08663"/>
        <property type="gene ID" value="SAMN05444003_2025"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017516">
        <property type="entry name" value="AbrB_dup"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007820">
        <property type="entry name" value="AbrB_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38457">
        <property type="entry name" value="PTHR38457"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05145">
        <property type="entry name" value="AbrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF038991">
        <property type="entry name" value="Protein_AbrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03082">
        <property type="entry name" value="Gneg_AbrB_dup"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="32"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="59"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="83"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="150"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="187"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="211"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="234"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="264"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="318"/>
            <end position="340"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH08663.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="356" mass="37080" checksum="A353255492AB38F3" modified="2017-03-15" version="1">MTTQRLGPPFLALIIGLLSGTLAYIINMPLPWMLGSMIGVTIVAMAGAPIKAPNRLRPIVIPIIGVMLGSGMTAEIFGQLGQWAGTLIVLPFVLTAAGVVSYTVYRRIGGYDPTTAFYSSMPGGLNEMLLMGGAAGGDERRIALAHAARVLLIIFLVAMVFGLLFGVQTGAGGGNWTSLTAPTVQDYALLIGCAVIGVPLARAARFPAPGLFGPMILSGLVHTLGWTYVSPPSLFIITAQIVVGTIIGCRFLGATLREVGKDLVLAALVTIIALLATGLFAFITAAIIGMSEAQAFLAFAPGGVTEMSLMTLAIGEDVAFVSIAHLIRITLVIAIAPILFRAFMRISGLAPTKDLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q739</accession>
    <name>A0A1M5Q739_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Farnesyl-diphosphate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2071</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the FPP/GGPP synthase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900827.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2071"/>
    <dbReference type="EnsemblBacteria" id="SHH09569">
        <property type="protein sequence ID" value="SHH09569"/>
        <property type="gene ID" value="SAMN05444003_2071"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008299">
        <property type="term" value="P:isoprenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00685">
        <property type="entry name" value="Trans_IPPS_HT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.600.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008949">
        <property type="entry name" value="Isoprenoid_synthase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000092">
        <property type="entry name" value="Polyprenyl_synt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033749">
        <property type="entry name" value="Polyprenyl_synt_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00348">
        <property type="entry name" value="polyprenyl_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48576">
        <property type="entry name" value="SSF48576"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00723">
        <property type="entry name" value="POLYPRENYL_SYNTHASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00444">
        <property type="entry name" value="POLYPRENYL_SYNTHASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU004466"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH09569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="293" mass="30623" checksum="9C2AB59086C3EC27" modified="2017-03-15" version="1">MRMADRIETAVSNAIYKGQGGMAPARLAASLDYAVNPGGARIRPTILMSVAMACGEDKPELTDAAASALEVIHCASLVHDDLPCFDDADVRRGKPSLHKAFSEPLAVLAGDSLIVMGFQILTKAAVHDPERAVALIDILSNRTGMPNGICAGQGWESETEIDLSAYHQSKTGALFIAATQMGAAAAGQEAEPWEELGSRIGEAFQVADDLRDALCDEQMLGKPAGQDDLHGRPNAVATYGVRGAVARFDDILAGAIASIPACPGEAALAQMVRAYADKLVPADARESLSVPGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q789</accession>
    <name>A0A1M5Q789_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Epoxyqueuosine reductase</fullName>
            <ecNumber evidence="7">1.17.99.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Queuosine biosynthesis protein QueG</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">queG</name>
        <name evidence="9" type="ORF">SAMN05444003_2097</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>AH2 + epoxyqueuosine(34) in tRNA = A + H2O + queuosine(34) in tRNA</text>
            <dbReference type="Rhea" id="RHEA:32159"/>
            <dbReference type="Rhea" id="RHEA-COMP:10345"/>
            <dbReference type="Rhea" id="RHEA-COMP:10346"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:82831"/>
            <dbReference type="ChEBI" id="CHEBI:82834"/>
            <dbReference type="EC" id="1.17.99.6"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="7">Binds 2 [4Fe-4S] clusters per monomer.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>cob(II)alamin</name>
            <dbReference type="ChEBI" id="CHEBI:16304"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="7">tRNA modification; tRNA-queuosine biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the QueG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="1.17.99.6" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH10067.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900850.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2097"/>
    <dbReference type="EnsemblBacteria" id="SHH10067">
        <property type="protein sequence ID" value="SHH10067"/>
        <property type="gene ID" value="SAMN05444003_2097"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00392"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
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        <property type="term" value="F:epoxyqueuosine reductase activity"/>
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    </dbReference>
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        <property type="term" value="F:metal ion binding"/>
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        <property type="project" value="UniProtKB-KW"/>
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        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
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        <property type="match status" value="1"/>
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    </dbReference>
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    <keyword evidence="7" id="KW-0170">Cobalt</keyword>
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    <keyword evidence="5 7" id="KW-0408">Iron</keyword>
    <keyword evidence="6 7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4 7" id="KW-0671">Queuosine biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
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        <location>
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            <end position="204"/>
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        <location>
            <begin position="237"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="7">
        <location>
            <position position="130"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="54"/>
        </location>
        <ligand>
            <name>cob(II)alamin</name>
            <dbReference type="ChEBI" id="CHEBI:16304"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="130"/>
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        <ligand>
            <name>cob(II)alamin</name>
            <dbReference type="ChEBI" id="CHEBI:16304"/>
        </ligand>
    </feature>
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        <location>
            <position position="154"/>
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        <ligand>
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        </ligand>
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        <location>
            <position position="165"/>
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        <ligand>
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        <location>
            <position position="184"/>
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            <name>[4Fe-4S] cluster</name>
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        <location>
            <position position="194"/>
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        <location>
            <position position="210"/>
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        <ligand>
            <name>[4Fe-4S] cluster</name>
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        <location>
            <position position="212"/>
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            <name>cob(II)alamin</name>
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        </ligand>
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        <location>
            <position position="219"/>
        </location>
        <ligand>
            <name>tRNA</name>
            <dbReference type="ChEBI" id="CHEBI:17843"/>
        </ligand>
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            <position position="237"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
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            <label>2</label>
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        <location>
            <position position="240"/>
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        <ligand>
            <name>[4Fe-4S] cluster</name>
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        <location>
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            <name>[4Fe-4S] cluster</name>
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        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
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            <dbReference type="HAMAP-Rule" id="MF_00916"/>
        </source>
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            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
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            <dbReference type="EMBL" id="SHH10067.1"/>
        </source>
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        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="341" mass="37582" checksum="06F20255A534998B" modified="2017-03-15" version="1">MKQALVAYALEAGFSKVGVCRPSAVPQIADRLAAFVDAGRHGQMGWMAERMGWRSDPTALWPEAKSVIMLAERYTPEHDPLAILDHPEKAAISVYAQGRDYHDVVKKRLKKVGRWLIEQAPGAEIKVFVDTAPVMEKPLAQAAGLGWQGKHTNLLSRDLGNWFFLGAIFTTVELEPDVAEEEHCGSCRACLDICPTDAFPAPFQLDARRCISYLTIEHKGPVDPDLRAALGNRIYGCDDCLAVCPWNKFAQEGRDAKLAAREDLLAPDLIALAQLDDAGFRQFFSGSPIKRIGRDRFVRNVTYALGNSGRPEAAPVLQELVSDPDEAVSDGARWALEQLED</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QHF9</accession>
    <name>A0A1M5QHF9_9RHOB</name>
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        <submittedName>
            <fullName evidence="7">Putative spermidine/putrescine transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2113</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
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        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
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                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
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        </subcellularLocation>
    </comment>
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        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
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        <property type="project" value="InterPro"/>
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        <property type="entry name" value="MetI-like"/>
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        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
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        <property type="entry name" value="BPD_transp_1"/>
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    </dbReference>
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    </dbReference>
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        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
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    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="7"/>
            <end position="34"/>
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            <end position="94"/>
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            <end position="160"/>
        </location>
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            <begin position="181"/>
            <end position="204"/>
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            <end position="263"/>
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    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="69"/>
            <end position="259"/>
        </location>
    </feature>
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        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
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    </evidence>
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        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH13326.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="279" mass="30588" checksum="ECE192B604567E12" modified="2017-03-15" version="1">MEPRPKSFYALTAFFVLFLIFLYGPTVTIGILSFQGPGGGLTFPMRGVSLHWFRDLFEQQAVGDIWGSFSRSLVLGLMVMVTTVVVSVMGGLAFRKRFAGSTVLFYLIITSLVIPSILISLGVGLIWSQSGLPVHWSSSGFGAQLTWTLPFGLLIMFAVFNRFDRSYEEAARDLGASPWQVIRHVVLPIIAPSLIGVALFGFTLSYDEFARTLLTSGSYNTLPLEIFGMTTNVTTPVLFALGTLTTVFSLLVIGVFLLVVWLLNHRRARQGSDAGKGMI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QMI4</accession>
    <name>A0A1M5QMI4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Molecular chaperone Hsp33</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2206</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15252.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2206"/>
    <dbReference type="EnsemblBacteria" id="SHH15252">
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        <property type="gene ID" value="SAMN05444003_2206"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00498">
        <property type="entry name" value="Hsp33"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000397">
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    </dbReference>
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        <property type="entry name" value="Heat_shock_Hsp33_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016153">
        <property type="entry name" value="Heat_shock_Hsp33_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023212">
        <property type="entry name" value="Hsp33_helix_hairpin_bin_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30111">
        <property type="entry name" value="PTHR30111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01430">
        <property type="entry name" value="HSP33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005261">
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF118352"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64397">
        <property type="entry name" value="SSF64397"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0143">Chaperone</keyword>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH15252.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="331" mass="36225" checksum="57AF03F24350377B" modified="2017-03-15" version="1">MTTGAKIAWDDTVLPFQLDRSDIRGRVARLDGVLESVLKQHDYPPVIEALVAEMALLTALIGQTVKLRWKLSLQVRGSGAARLIATDYYGPTEEGEPARIRAYASYDAETLEHSADPFSQIGQGYFAILIDQGEGMQPYQGITPIAGGSLSACAETYFAQSEQIPTRFALTYGRSQQPGENEHWRAGGVMLQHMPKASPLMEQGEPDSDGLLTAASLLDDDEGENWSRANMLLDTVEEIELIGPTVTPTELLLRLFHEEDARVYDTQAIRFGCTCSEERVRQSLSIYSAKDISTMTTDEGIVEADCQFCGAHYAFDPATLGFEAEATGDGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QPW6</accession>
    <name>A0A1M5QPW6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Adenosylhomocysteinase</fullName>
            <ecNumber evidence="4">3.3.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">S-adenosyl-L-homocysteine hydrolase</fullName>
            <shortName evidence="4">AdoHcyase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">ahcY</name>
        <name evidence="9" type="ORF">SAMN05444003_2252</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4 6">
            <text>H2O + S-adenosyl-L-homocysteine = adenosine + L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:21708"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16335"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:58199"/>
            <dbReference type="EC" id="3.3.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4 6">
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </cofactor>
        <text evidence="4 6">Binds 1 NAD(+) per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4 6">Amino-acid biosynthesis; L-homocysteine biosynthesis; L-homocysteine from S-adenosyl-L-homocysteine: step 1/1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 4 7">Belongs to the adenosylhomocysteinase family.</text>
    </comment>
    <dbReference type="EC" id="3.3.1.1" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16145.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901487.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2252"/>
    <dbReference type="EnsemblBacteria" id="SHH16145">
        <property type="protein sequence ID" value="SHH16145"/>
        <property type="gene ID" value="SAMN05444003_2252"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00314">
        <property type="reaction ID" value="UER00076"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004013">
        <property type="term" value="F:adenosylhomocysteinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006730">
        <property type="term" value="P:one-carbon metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00401">
        <property type="entry name" value="SAHH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1480">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00563">
        <property type="entry name" value="AdoHcyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042172">
        <property type="entry name" value="Adenosylhomocyst_ase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000043">
        <property type="entry name" value="Adenosylhomocysteinase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015878">
        <property type="entry name" value="Ado_hCys_hydrolase_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020082">
        <property type="entry name" value="S-Ado-L-homoCys_hydrolase_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23420">
        <property type="entry name" value="PTHR23420"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05221">
        <property type="entry name" value="AdoHcyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00670">
        <property type="entry name" value="AdoHcyase_NAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001109">
        <property type="entry name" value="Ad_hcy_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00996">
        <property type="entry name" value="AdoHcyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00997">
        <property type="entry name" value="AdoHcyase_NAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00936">
        <property type="entry name" value="ahcY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00738">
        <property type="entry name" value="ADOHCYASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00739">
        <property type="entry name" value="ADOHCYASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 4 6" id="KW-0520">NAD</keyword>
    <keyword evidence="2 4 6" id="KW-0554">One-carbon metabolism</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AdoHcyase_NAD" evidence="8">
        <location>
            <begin position="223"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4 5">
        <location>
            <position position="55"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 5">
        <location>
            <position position="128"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 5">
        <location>
            <position position="188"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="189"/>
            <end position="191"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 5">
        <location>
            <position position="218"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 5">
        <location>
            <position position="222"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="223"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="252"/>
            <end position="257"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="275"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="310"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="331"/>
            <end position="333"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="376"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR001109-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000548"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU004166"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00997"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH16145.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="462" mass="50600" checksum="02B322B8A203BC5F" modified="2017-03-15" version="1">MSNDYVVKDIELAAFGRKELDIAETEMPGLMALRAEYGASKPLSGARIVGSLHMTIQTAVLIETLVELGADVRWASCNIFSTQDHAAAAIAAGGTPVFAVKGQTLEEHWDYLDKSFMFPDGPNLILDDGGDATLYVLLGARAEAGEDIIPVPQSEEEEVIKAQIKKRMEASPGWFTKTKEQIIGVSEETTTGVHRLYDLHKTGQLPFPAINVNDSVTKSKFDNKYGCKESLVDGIRRATDTMMAGKVAVVMGYGDVGKGSAASLRGAGARVKVTEVDPICALQAAMDGFEVVLLEDALADADIFITTTGNKDVIRIEHMREMKDMAIVGNIGHFDNEIQVASLRNHKWTNIKEQVDMIEMPNGNRLILLSEGRLLNLGNATGHPSFVMSASFTNQVLAQIELWTKGDEYQPGVFILPKHLDEKVARLHLDRIGVKLSKLNKEQADYIGVAPEGPFKPEHYRY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QQ01</accession>
    <name>A0A1M5QQ01_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2254</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16174.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901127.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH16174">
        <property type="protein sequence ID" value="SHH16174"/>
        <property type="gene ID" value="SAMN05444003_2254"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.238.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021274">
        <property type="entry name" value="DUF2853"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023154">
        <property type="entry name" value="Jann4075-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11015">
        <property type="entry name" value="DUF2853"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF158587">
        <property type="entry name" value="SSF158587"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH16174.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="113" mass="12593" checksum="1E05EBBE4F35EFD4" modified="2017-03-15" version="1">MGKRDDLIAKYADDLKNKCGLTPDMDLLTKVTIGCGPAIYDADASTVAASQEHELETVKQNYLMKKLGLADGPELMESINKAMDTYGQSERNKYRAVVYYMLCKHFGKESVYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QU14</accession>
    <name>A0A1M5QU14_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Spermidine/putrescine import ATP-binding protein PotA</fullName>
            <ecNumber evidence="8">7.6.2.11</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">potA</name>
        <name evidence="10" type="ORF">SAMN05444003_2313</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">The complex is composed of two ATP-binding proteins (PotA), two transmembrane proteins (PotB and PotC) and a solute-binding protein (PotD).</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.</text>
    </comment>
    <dbReference type="EC" id="7.6.2.11" evidence="8"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17421.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901219.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2313"/>
    <dbReference type="EnsemblBacteria" id="SHH17421">
        <property type="protein sequence ID" value="SHH17421"/>
        <property type="gene ID" value="SAMN05444003_2313"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015417">
        <property type="term" value="F:ABC-type polyamine transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005893">
        <property type="entry name" value="Sp_pt_ABC_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013611">
        <property type="entry name" value="Transp-assoc_OB_typ2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08402">
        <property type="entry name" value="TOBE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01187">
        <property type="entry name" value="potA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 7 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-1278">Translocase</keyword>
    <keyword evidence="1 8" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="9">
        <location>
            <begin position="20"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="52"/>
            <end position="59"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU364083"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH17421.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="376" mass="41447" checksum="8FF78CB0DC07D6A2" modified="2017-03-15" version="1">MSSATVEFSPWTDPDTTPLISFEGVTKRFGNFTAIDNINLNIYPREFFALLGPSGCGKTTLMRMLGGFEEATEGTITIDGQDMAGIPANKRAVNMMFQSYALFPHLTVADNIAFGLHRSPMPKSEIQGRVDEMLRLVQLQKFAKRKPHQISGGQRQRVALARALAKAPKLLLLDEPLGALDKKLRQETQFELMDIQETTGTTFVIVTHDQEEAMTVASRIAVMDNGLLKQVDTPDRIYETPNSVYVADFIGDVNIVTGTATTVDGDATQLTWAEGVAPIKGMTGAQVTQGEPASFVIRPEKVSINKSEPEASNKVQGQVLDIAYLGNMSTYHVELPNGQIIKSQTANNRRIARRDITWEDTVWLSWTETAGIVLRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QUM9</accession>
    <name>A0A1M5QUM9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Aminopyrimidine aminohydrolase</fullName>
            <ecNumber evidence="1">3.5.99.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2333</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>4-amino-5-aminomethyl-2-methylpyrimidine + H2O = 4-amino-5-hydroxymethyl-2-methylpyrimidine + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:31799"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16892"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:63416"/>
            <dbReference type="EC" id="3.5.99.2"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H2O + thiamine = 4-amino-5-hydroxymethyl-2-methylpyrimidine + 5-(2-hydroxyethyl)-4-methylthiazole + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17509"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16892"/>
            <dbReference type="ChEBI" id="CHEBI:17957"/>
            <dbReference type="ChEBI" id="CHEBI:18385"/>
            <dbReference type="EC" id="3.5.99.2"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; thiamine diphosphate biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the TenA family.</text>
    </comment>
    <dbReference type="EC" id="3.5.99.2" evidence="1"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17854.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901252.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2333"/>
    <dbReference type="EnsemblBacteria" id="SHH17854">
        <property type="protein sequence ID" value="SHH17854"/>
        <property type="gene ID" value="SAMN05444003_2333"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00060"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050334">
        <property type="term" value="F:thiaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009228">
        <property type="term" value="P:thiamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009229">
        <property type="term" value="P:thiamine diphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.910.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016084">
        <property type="entry name" value="Haem_Oase-like_multi-hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004305">
        <property type="entry name" value="Thiaminase-2/PQQC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027574">
        <property type="entry name" value="Thiaminase_II"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03070">
        <property type="entry name" value="TENA_THI-4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48613">
        <property type="entry name" value="SSF48613"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04306">
        <property type="entry name" value="salvage_TenA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0784">Thiamine biosynthesis</keyword>
    <feature type="domain" description="TENA_THI-4" evidence="2">
        <location>
            <begin position="16"/>
            <end position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363093"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03070"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH17854.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="225" mass="24913" checksum="08CA548E4A020872" modified="2017-03-15" version="1">MSVSYGKTFASLRAGADQAWEDYTRHAFVEGLCDGTLPRTAFLHYLVQDYVFLIHFSRAWSLGLVKSETLDEMKVCAGTVDALVNHEMALHVQTCAAEGIDEETLFTAAEEAENLAYTRYVMDAGLQGDFLDLMAALAPCVFGYGEIGARLGTDHAEPYKDWINTYAGAEYQEVCETVGTMLDAAVARRLGDDPQSSPRWAHLQNRFTRATELEVSFWSMGLRGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QUQ0</accession>
    <name>A0A1M5QUQ0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Glycosyl transferase family 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2321</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17596.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901235.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2321"/>
    <dbReference type="EnsemblBacteria" id="SHH17596">
        <property type="protein sequence ID" value="SHH17596"/>
        <property type="gene ID" value="SAMN05444003_2321"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH17596.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="335" mass="38453" checksum="8CFDA0FAB7F4C0B3" modified="2017-03-15" version="1">MAEQETFLIVTTMKNEGPFMLDWVAYNRSIGFDDILIYTNDCSDGTDLIGDRLQALGFAHHERNRLGPRATPQNRAHSLSMKHPSFHAGDWVMSLDVDEYINVRLPSGSIRELVDASGPSDAISIAWKMFGHGGIDDFEDKPVPELFLQSTGEHQFPHYKTRAFKTLFRNNGKFHRYKAHRPRINPDEAPNPEAPYEGVVWRDAAGQTTQAADVDWKIWRGFGHRFARVHHYAVRTTDSFLVKRDRGRTNHVGQDQGLEYWQQLNHNHERDDSILRHMSGMQAVKDEMMADTTLRKLHEDACDWHRAKAAELKARPEWSDFVATLYGSKEKAQAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QX22</accession>
    <name>A0A1M5QX22_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2361</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18436.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH18436">
        <property type="protein sequence ID" value="SHH18436"/>
        <property type="gene ID" value="SAMN05444003_2361"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH18436.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="77" mass="8424" checksum="7FDBE8CEF0BF3F26" modified="2017-03-15" version="1">MSLLSNLTTSWSSPMVLVDDEVWQAREGSCYLSTDETPSTDDGIVLEQGQALFFSAGMAVHYRSKGLQNAILARVKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QXD7</accession>
    <name>A0A1M5QXD7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">DNA-binding response regulator, OmpR family, contains REC and winged-helix (WHTH) domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2369</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18578.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901313.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH18578">
        <property type="protein sequence ID" value="SHH18578"/>
        <property type="gene ID" value="SAMN05444003_2369"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3 6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="7"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="5">
        <location>
            <begin position="132"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="3">
        <location>
            <begin position="132"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH18578.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="235" mass="26122" checksum="7EFDF0D24E19D6BA" modified="2017-03-15" version="1">MADDQSLITILEDSREIRDLLTETLQHEGFDTLSFARATEFERNMRGLKPDVCIIDLGLPDRDGLSVVNTVASNSGAAVLIISGRSNTQDKIVGLELGADDYITKPFEIAEVVARVKALLRRKAPKAEATLSKIVRFNGWTADLEQHLLTSDDGKVERLSFAEGQVLRVFLSKPNRLITRDQILDDLSNGESDNFDRTIDVRISRLRAKLHDDPNNPKVIKTIYGAGYIFIAQVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QZI1</accession>
    <name>A0A1M5QZI1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Magnesium chelatase accessory protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2408</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19318.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2408"/>
    <dbReference type="EnsemblBacteria" id="SHH19318">
        <property type="protein sequence ID" value="SHH19318"/>
        <property type="gene ID" value="SAMN05444003_2408"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017497">
        <property type="entry name" value="Mg-chelatase_BchO"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12697">
        <property type="entry name" value="Abhydrolase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03056">
        <property type="entry name" value="bchO_mg_che_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="37"/>
            <end position="276"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH19318.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="289" mass="31628" checksum="BEFAD48EE29CD269" modified="2017-03-15" version="1">MKWPDDATDWPMREYSQHILCRPHRWHIQRAGNGPRLLLIHGAGGATQSWRNLYPLLEPFFELLAVDLPGQGFTRSGAQSRHGLDPMAEDLLSLLHDIDFEPDAIIGHSAGTAIALRMVEMECSAKSVLGINAALGNFEGVAGWLFPFLAKALALTPFAANVFATTTTRSSVRQLLIGTGSKIDERGEDLYYRLATNPEHVDGTLSMMAQWSLDGLLKRLGTITTDTHLLACTIDNAVPFSVSERADARLPNSSLTKMDGLGHLAHEEDAETVANWIFEKLQTKNAAAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R0Y2</accession>
    <name>A0A1M5R0Y2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Universal stress protein family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2444</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal stress protein A family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH20035.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901417.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2444"/>
    <dbReference type="EnsemblBacteria" id="SHH20035">
        <property type="protein sequence ID" value="SHH20035"/>
        <property type="gene ID" value="SAMN05444003_2444"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006015">
        <property type="entry name" value="Universal_stress_UspA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006016">
        <property type="entry name" value="UspA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00582">
        <property type="entry name" value="Usp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01438">
        <property type="entry name" value="UNVRSLSTRESS"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Usp" evidence="2">
        <location>
            <begin position="215"/>
            <end position="282"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008791"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH20035.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="283" mass="30675" checksum="878196D53AFD1B02" modified="2017-03-15" version="1">MIKSILVPVRGDGMVATVLAHAAELAKKHDAHVNVVHCRTRTKDLIPQGIPLPDFARKMMVEQAGELANRQEDHLRRILHRLAREFGLAEDTPSDVGASCSFTEEHGRMADVVKHAGRLADIIVLPKPQRERNLGQSSLKSALYGAGRPVLICPGQLQPDETFAQHVAVGWNGSLPAARAVASSLDVVAAAKKVSILTGGKVQAHGPTAEELQDYYALRGLEADIIRFDVRDPAKDLLQTYSDVGASLLVTGAYSHSHETEMLLGGNTERIIDQTEMPVLMAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RBT4</accession>
    <name>A0A1M5RBT4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">L,D-transpeptidase catalytic domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2501</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the YkuD family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23827.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901881.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH23827">
        <property type="protein sequence ID" value="SHH23827"/>
        <property type="gene ID" value="SAMN05444003_2501"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071972">
        <property type="term" value="F:peptidoglycan L,D-transpeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd16913">
        <property type="entry name" value="YkuD_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005490">
        <property type="entry name" value="LD_TPept_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038063">
        <property type="entry name" value="Transpep_catalytic_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03734">
        <property type="entry name" value="YkuD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141523">
        <property type="entry name" value="SSF141523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="YkuD" evidence="4">
        <location>
            <begin position="47"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF03734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH23827.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="183" mass="20578" checksum="A2D14EE192D6FB5E" modified="2017-03-15" version="1">MINRRHFVAGAAASALATPALSNTYQLPRKYLPVEVDVNPDLPAGQIHVIKNDFHLYWTLGKGRARRYSVAIGDQGRNYTGVLTIRRKAEWPSWIPTANMVRLEPEIYGPYRRGLPGGHPRNPMGSRALYLYEGGRDTYYRIHGTMQPETIGTAFSSGCVRLTNEHVAELYDMVPVGTKVFLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RFF5</accession>
    <name>A0A1M5RFF5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Ribonuclease R</fullName>
            <shortName evidence="4">RNase R</shortName>
            <ecNumber evidence="4">3.1.13.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rnr</name>
        <name evidence="7" type="ORF">SAMN05444003_2563</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 4">
            <text>Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates.</text>
            <dbReference type="EC" id="3.1.13.1"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the RNR ribonuclease family. RNase R subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.1.13.1" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901679.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2563"/>
    <dbReference type="EnsemblBacteria" id="SHH25102">
        <property type="protein sequence ID" value="SHH25102"/>
        <property type="gene ID" value="SAMN05444003_2563"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008859">
        <property type="term" value="F:exoribonuclease II activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01895">
        <property type="entry name" value="RNase_R"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040476">
        <property type="entry name" value="CSD2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001900">
        <property type="entry name" value="RNase_II/R"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022966">
        <property type="entry name" value="RNase_II/R_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004476">
        <property type="entry name" value="RNase_II/RNase_R"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011805">
        <property type="entry name" value="RNase_R"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022967">
        <property type="entry name" value="S1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003029">
        <property type="entry name" value="S1_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17876">
        <property type="entry name" value="CSD2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00773">
        <property type="entry name" value="RNB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00575">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00955">
        <property type="entry name" value="RNB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00316">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00358">
        <property type="entry name" value="3_prime_RNase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02063">
        <property type="entry name" value="RNase_R"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01175">
        <property type="entry name" value="RIBONUCLEASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50126">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 4" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="2 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="S1 motif" evidence="6">
        <location>
            <begin position="628"/>
            <end position="714"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="716"/>
            <end position="753"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="5">
        <location>
            <begin position="723"/>
            <end position="753"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01895"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH25102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="753" mass="83351" checksum="3D456B688C669CAC" modified="2017-03-15" version="1">MARIPSKSEILDWITDNPSRTAKRDIARAFGIKGAQRIDLKRILKEMEAEGMLQKRRSSYRDADKLPPVSVLQVIAPDEDGDLLARPMEWNGKGEPPTVLLSLRDSDPALGAGDRILARLTETPKDEFPYMGRMIRRIGTNPLRILGVFRAGSEGGRIVPIDKGSDKEWIVPAGELGGAKDGELVEAEQSGPKTRMGLPRARIVTRLGDPTQAKAVSLIAIHQHGIPDHFPDEVIAEADKAEPAGLGKRRDLRDLPLVTIDPADARDHDDACFVEPDDDPKNKGGFIIWVAIADVAHYVTSGSALDREARKRGNSTYFPDRVVPMLPDRLSGDLCSLHEGVERACIAVAMRIDSHGNKIDHSFHRALMKSHASLNYEEVQAAIDGNANAKTEPLLEGVLRPLYAAYEALKKARAQRQPLELDLPERQIEIDDKGIVRSVNFKERLDAHRLIEEFMVLANVAAAETLIAKRVPQLFRVHEEPSPEKIDQLREVAQASGLVLAKGQVLKTGQLNRLMEQARETEQSELISLTTLRSMTQAYYNPENFGHFGLALQAYAHFTSPIRRYSDLIVHRALVDAHKWGDDGLSPFDVENLAETAKQISDTERRSMMAERDTTDRYLAAFLSDRMGAEMPGRVAGIAKFGVFIKLDETGADALVPIRTLGHEYFDYDAETQTLMGSESGTMIGLGQRATVKLIEAAPISGGLLAELVSLDEQILPRGPSRGRGKPARRKMSAAKKKGAKTKRKVTRKRRQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RGS3</accession>
    <name>A0A1M5RGS3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Carbohydrate ABC transporter ATP-binding protein, CUT1 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2575</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901696.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH25350">
        <property type="protein sequence ID" value="SHH25350"/>
        <property type="gene ID" value="SAMN05444003_2575"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008643">
        <property type="term" value="P:carbohydrate transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03301">
        <property type="entry name" value="ABC_MalK_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015855">
        <property type="entry name" value="ABC_transpr_MalK-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040582">
        <property type="entry name" value="OB_MalK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17912">
        <property type="entry name" value="OB_MalK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="6">
        <location>
            <begin position="5"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="37"/>
            <end position="44"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH25350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="359" mass="38926" checksum="BDD9F30D16DD4D08" modified="2017-03-15" version="1">MANSVEIKHLDLNFGAVNVLKDLNLEIAEGEFLVLLGSSGCGKSTLLNCIAGLLEVSDGQIFIKGNNVTWAEPSDRGIGMVFQSYALYPQMTVRGNLSFGLKNAKFPKAEIEKRIAEAADILQIQPLLDRKPAALSGGQRQRVAIGRALVRDVDVFLFDEPLSNLDAKLRADLRVELKRLHNQLENTMIYVTHDQVEAMTLADRIAIMKGGKIMQLGSPDEIYNRPENIYVADFIGSPSMNFFDGEVVGNHFKGGDLDLPLDGYTFGPGGAVDGKAVIGIRPEHIITGELVAGAPVKLEVPVELVEPMGSDTLVYGTLNGQALRIRMDGQARVSLGDSLPIGIDPSRASLFDKASELRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RL32</accession>
    <name>A0A1M5RL32_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">PTS system, mannose-specific IIA component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2652</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH27042.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901821.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2652"/>
    <dbReference type="EnsemblBacteria" id="SHH27042">
        <property type="protein sequence ID" value="SHH27042"/>
        <property type="gene ID" value="SAMN05444003_2652"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009401">
        <property type="term" value="P:phosphoenolpyruvate-dependent sugar phosphotransferase system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.510">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004701">
        <property type="entry name" value="PTS_EIIA_man-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036662">
        <property type="entry name" value="PTS_EIIA_man-typ_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03610">
        <property type="entry name" value="EIIA-man"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53062">
        <property type="entry name" value="SSF53062"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51096">
        <property type="entry name" value="PTS_EIIA_TYPE_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PTS EIIA type-4" evidence="2">
        <location>
            <begin position="1"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51096"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH27042.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="130" mass="13766" checksum="FF4A619E5CDF604F" modified="2017-03-15" version="1">MIGIVIVAHGRLAEEYLAAIEHVVGPQTGVEAITIAADDDRSAKQNEICRAANDVDSGDGVVVVTDMFGGSPSNLSLRACSADKRRIMYGANLPMLIKLAKSRKKPIGNAVDAALKAAHKYIDAQTVRAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RNN1</accession>
    <name>A0A1M5RNN1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">30S ribosomal protein S7</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rpsG</name>
        <name evidence="11" type="ORF">SAMN05444003_2685</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Part of the 30S ribosomal subunit. Contacts proteins S9 and S11.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 8">Belongs to the universal ribosomal protein uS7 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH27796.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901872.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2685"/>
    <dbReference type="EnsemblBacteria" id="SHH27796">
        <property type="protein sequence ID" value="SHH27796"/>
        <property type="gene ID" value="SAMN05444003_2685"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015935">
        <property type="term" value="C:small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.455.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00480_B">
        <property type="entry name" value="Ribosomal_S7_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000235">
        <property type="entry name" value="Ribosomal_S5/S7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005717">
        <property type="entry name" value="Ribosomal_S7_bac/org-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020606">
        <property type="entry name" value="Ribosomal_S7_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023798">
        <property type="entry name" value="Ribosomal_S7_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036823">
        <property type="entry name" value="Ribosomal_S7_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11205">
        <property type="entry name" value="PTHR11205"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00177">
        <property type="entry name" value="Ribosomal_S7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002122">
        <property type="entry name" value="RPS7p_RPS7a_RPS5e_RPS7o"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47973">
        <property type="entry name" value="SSF47973"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01029">
        <property type="entry name" value="rpsG_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00052">
        <property type="entry name" value="RIBOSOMAL_S7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7 8" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="5 7 8" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4 7 9" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 7 9" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="2 7" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="Ribosomal_S7" evidence="10">
        <location>
            <begin position="1"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00480"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003619"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003620"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00177"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH27796.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="156" mass="17916" checksum="B3284687B2960351" modified="2017-03-15" version="1">MSRRHAAEKREVLPDAKFGDVVLTKFMNNLMIDGKKSVAEKIVYNAFDRVEDKLKKAPVEVFHEALDNIKPNLEVRSRRVGGATYQVPVDVRPERREALAIRWMIAAAKNRNENTMEERLAGELLDAVNNRGAAVKKREDTHKMAEANKAFSHYRW</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RUI9</accession>
    <name>A0A1M5RUI9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">NitT/TauT family transport system substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2701</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH29914.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901948.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2701"/>
    <dbReference type="EnsemblBacteria" id="SHH29914">
        <property type="protein sequence ID" value="SHH29914"/>
        <property type="gene ID" value="SAMN05444003_2701"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009228">
        <property type="term" value="P:thiamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027939">
        <property type="entry name" value="NMT1/THI5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015168">
        <property type="entry name" value="SsuA/THI5"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31528">
        <property type="entry name" value="PTHR31528"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09084">
        <property type="entry name" value="NMT1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012409471" evidence="1">
        <location>
            <begin position="23"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="domain" description="NMT1" evidence="2">
        <location>
            <begin position="36"/>
            <end position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09084"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH29914.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="329" mass="35283" checksum="F7B3E97B28E99CD7" modified="2017-03-15" version="1">MKKATTTLCASALAMMATSALAADDVTLQLKWVTQAQFAGYYVALENGFYEEEDLNVTILPGGPDIAPTQVLAGGGADVTVEWMPAALAAREKGLPMVNIAQPFKSSGMMLTCRKDAGVESTDDLAGKTLGVWFFGNEFPFLSWMSQLGLSTDGGEDGVEVLKQGFNVDPILNGQAACVSTMTYNEYWQVIDAGLTPEELTTFKYEDQGVATLEDGLYALEENLADPAFEDKMVRFVRASMRGWKWAEENPDDAALIVLDYDETGAQTEGHQTRMMGEIAKLTAGSNGALDPADYERTVASLLAGDSDPVITSAPEGAWTHAITDAALN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RVE5</accession>
    <name>A0A1M5RVE5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Predicted dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2715</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30206.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901968.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH30206">
        <property type="protein sequence ID" value="SHH30206"/>
        <property type="gene ID" value="SAMN05444003_2715"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004104">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000683">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01408">
        <property type="entry name" value="GFO_IDH_MocA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02894">
        <property type="entry name" value="GFO_IDH_MocA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GFO_IDH_MocA" evidence="1">
        <location>
            <begin position="4"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="domain" description="GFO_IDH_MocA_C" evidence="2">
        <location>
            <begin position="146"/>
            <end position="369"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH30206.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="378" mass="41123" checksum="37E982B3361F5431" modified="2017-03-15" version="1">MKRLNWGMIGGGEGSQIGPAHRMGAQADGNFVLAAGALDHDAERGKDYAQRLGVAEDRAYGNWQEMLEGEKNRDDRIDLVTVATPNSTHFEITKSFLEAGFNVLCEKPMTMTVEEGEEIVKIAEATGKICAVNYCYSAYPMVREMRNMVANGDIGKVRLIVTSFSHGHHGDATDADNPRVRWRYDPAMAGVSGQFADCGIHAMHMASFVAGDEVRTLSADFASTIASRELEDDAMVSFRMERGTVGRLWTSSVAIGRQHGFDIQVFGETGGMKWFSEQPNQVLYTPVGGRTQIMEKGESGLSDEASRLSRVAIAHPEGFPMAVANIYVDLAAAIRGEPHGDYPKAVDGLRSMAAVHQAVASANEDGAWVDARPPMFRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RWK0</accession>
    <name>A0A1M5RWK0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, AsnC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2730</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30541.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901989.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2730"/>
    <dbReference type="EnsemblBacteria" id="SHH30541">
        <property type="protein sequence ID" value="SHH30541"/>
        <property type="gene ID" value="SAMN05444003_2730"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000485">
        <property type="entry name" value="AsnC-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019888">
        <property type="entry name" value="Tscrpt_reg_AsnC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019887">
        <property type="entry name" value="Tscrpt_reg_AsnC/Lrp_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019885">
        <property type="entry name" value="Tscrpt_reg_HTH_AsnC-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01037">
        <property type="entry name" value="AsnC_trans_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00033">
        <property type="entry name" value="HTHASNC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00344">
        <property type="entry name" value="HTH_ASNC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00519">
        <property type="entry name" value="HTH_ASNC_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50956">
        <property type="entry name" value="HTH_ASNC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH asnC-type" evidence="4">
        <location>
            <begin position="3"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH30541.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="152" mass="16966" checksum="29943B1652AEE502" modified="2017-03-15" version="1">MEIDHIDRRILTMLQKSGRMSNAELSEAVNLSPSACHRRVQRLEADGFIRDYVALLDPKKVERPTTVFVEITLSGQADEVLDAFERAVARVPDVLECHLMAGSADYLLKVVAGDTEDFARIHRRYLATLPGVAQMQSSFALRTVRNTTALPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RX96</accession>
    <name>A0A1M5RX96_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">WD40-like Beta Propeller Repeat</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2744</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30855.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902013.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2744"/>
    <dbReference type="EnsemblBacteria" id="SHH30855">
        <property type="protein sequence ID" value="SHH30855"/>
        <property type="gene ID" value="SAMN05444003_2744"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011659">
        <property type="entry name" value="PD40"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07676">
        <property type="entry name" value="PD40"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH30855.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="276" mass="29783" checksum="365197BE99D848C3" modified="2017-03-15" version="1">MKSELVIHKIADGSEQVIFETDDLIEAPNWSLDGSFLIVNGGGRIFRLDLDNPSQLHLIDTGGISHCNNDHGISPDGTTLVISDSPGRGTSCIYTLPIGGGEPTRVTPNTPSYWHGWSPDGTTLTYCAVRGGNFNIFTIPVEGGEETQLTFGAGHKDGPDYTPDGEWIWFNSDHHGVLPDLFRVRPNGSDLEQMTDDGSVNWFPHPSPDGATVLYLAYPPHVEGHPRGEDVALKLVSPTGGEGKTIAEFHGGQGSINVPCWAPDGTQFAYVRYSKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RXB5</accession>
    <name>A0A1M5RXB5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ion channel</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2745</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30875.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902014.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH30875">
        <property type="protein sequence ID" value="SHH30875"/>
        <property type="gene ID" value="SAMN05444003_2745"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013099">
        <property type="entry name" value="K_chnl_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07885">
        <property type="entry name" value="Ion_trans_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="59"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="85"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="115"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="157"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="187"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="domain" description="Ion_trans_2" evidence="2">
        <location>
            <begin position="126"/>
            <end position="202"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH30875.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="214" mass="23140" checksum="C02BF9EBA9C558DE" modified="2017-03-15" version="1">MVLKSGNFWLFMILGLNFWLVPIFELDEADEQFTDGLMAATLLAAVAIQGMAAPRFRKWAILAGIVILAAIAAEEILANLKYVENTVFAISFAAATALYFHTMTENLEEVTFDTVLAAACTYLLIGMFFAAIFGLVIEFDPNAFAAEGSVTGRYDMLYFSFATLTTLGAVDISPASDLAKMLTVFEAIVGLIYIAILVGAVVGSYAAKMSGRRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S0J7</accession>
    <name>A0A1M5S0J7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2793</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31979.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902083.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2793"/>
    <dbReference type="EnsemblBacteria" id="SHH31979">
        <property type="protein sequence ID" value="SHH31979"/>
        <property type="gene ID" value="SAMN05444003_2793"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009013">
        <property type="term" value="F:succinate-semialdehyde dehydrogenase [NAD(P)+] activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009450">
        <property type="term" value="P:gamma-aminobutyric acid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016160">
        <property type="entry name" value="Ald_DH_CS_CYS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010102">
        <property type="entry name" value="Succ_semiAld_DH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01780">
        <property type="entry name" value="SSADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00070">
        <property type="entry name" value="ALDEHYDE_DEHYDR_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="5">
        <location>
            <begin position="28"/>
            <end position="488"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="265"/>
        </location>
    </feature>
    <feature type="active site" evidence="3">
        <location>
            <position position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH31979.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="492" mass="52690" checksum="6049F0FBF7E90F27" modified="2017-03-15" version="1">MLDQTTDLKSLLSRPDLVCEKAFIRGEWVSSAVGKTFEVTNPARGDVIATVADLSRAETADAIQTAEDARHAWAAMTGKSRAQILRKWFDLMMENQEDLAIILTAEQGKPLAEARGEIAYGASFIEWFGEEAKRVYGETIPGHMPDKRITVIKQPIGVAAGITPWNFPNAMITRKAAPALAAGCSFIIRPATQTPLSALAMGKLAEEAGVPKGVFSVVTSSAASDIGKEFCENPHVKKLTFTGSTEVGRILLRQAADQVMKCSMELGGNAPFIVFDDADLDEAVVGAIACKFRNNGQTCVCANRIYVQAGVYDEFAAKLKAAVEALQIGDGLTEGTALGPLIETAAVEKVRRHLNDALSKGGEVLTGGNAHELGGLFFEPTIVTNATKDMLVSTDETFGPFAPLFKFEDEDDVIAQANDTIFGLASYFYAKDLSRVTKVAEALEYGIVGVNTGIISTEVAPFGGVKQSGLGREGSHHGIDDYMEMKYICTSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S1Q7</accession>
    <name>A0A1M5S1Q7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2815</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ROK (NagC/XylR) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32517.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2815"/>
    <dbReference type="EnsemblBacteria" id="SHH32517">
        <property type="protein sequence ID" value="SHH32517"/>
        <property type="gene ID" value="SAMN05444003_2815"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000600">
        <property type="entry name" value="ROK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18964">
        <property type="entry name" value="PTHR18964"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00480">
        <property type="entry name" value="ROK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH32517.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="420" mass="45154" checksum="BA36EA55B4602DBA" modified="2017-03-15" version="1">MNSAYTDDLLAPASGCGPLLEGGRRAGRPLRQQVFEYVRSHGQAARSDIAKSLDISAGSATTITADLIAEGLLHEVEGPAREQGRGRPRVALEVVSQAGYAIGVKLGFDAHTAVLVDFNGNVLADAKLPSKDQRRSTQELLDEVDELIGKLLSEYTVELKDVRAIGVGLPGIVEHSSGQVIWSSILHDRNQDLGIMLKDRYGVTIALDNDANMLTLAELWFGAGRSMSDFAVVTIESGVGMGLVLGNEIYRGAHGLGLELGHTKVQLDGALCRCGQRGCLEAYLADYALNREAGAALGHLLERSIGPEETLNLLFDQAKQGHEAAQTIFRRAGRFLSAGLSNVIQLFDPALIILSGSQMKYDYLYANEVIEDVAQLTLNNGRKPCKVEIHAWDDLVWARGASALALSKVTDATVGRDLNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SBI9</accession>
    <name>A0A1M5SBI9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Bifunctional protein PutA</fullName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName evidence="2">Proline dehydrogenase</fullName>
                <ecNumber evidence="2">1.5.5.2</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="2">Proline oxidase</fullName>
            </alternativeName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="2">Delta-1-pyrroline-5-carboxylate dehydrogenase</fullName>
                <shortName evidence="2">P5C dehydrogenase</shortName>
                <ecNumber evidence="2">1.2.1.88</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="2">L-glutamate gamma-semialdehyde dehydrogenase</fullName>
            </alternativeName>
        </domain>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_2882</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Oxidizes proline to glutamate for use as a carbon and nitrogen source.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>H2O + L-glutamate 5-semialdehyde + NAD(+) = 2 H(+) + L-glutamate + NADH</text>
            <dbReference type="Rhea" id="RHEA:30235"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:58066"/>
            <dbReference type="EC" id="1.2.1.88"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>a quinone + L-proline = (S)-1-pyrroline-5-carboxylate + a quinol + H(+)</text>
            <dbReference type="Rhea" id="RHEA:23784"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17388"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:60039"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
            <dbReference type="EC" id="1.5.5.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-acid degradation; L-proline degradation into L-glutamate; L-glutamate from L-proline: step 1/2.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-acid degradation; L-proline degradation into L-glutamate; L-glutamate from L-proline: step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">In the C-terminal section; belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">In the N-terminal section; belongs to the proline dehydrogenase family.</text>
    </comment>
    <dbReference type="EC" id="1.5.5.2" evidence="2"/>
    <dbReference type="EC" id="1.2.1.88" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH35876.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902257.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2882"/>
    <dbReference type="EnsemblBacteria" id="SHH35876">
        <property type="protein sequence ID" value="SHH35876"/>
        <property type="gene ID" value="SAMN05444003_2882"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00261">
        <property type="reaction ID" value="UER00373"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003842">
        <property type="term" value="F:1-pyrroline-5-carboxylate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004657">
        <property type="term" value="F:proline dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006561">
        <property type="term" value="P:proline biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010133">
        <property type="term" value="P:proline catabolic process to glutamate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016160">
        <property type="entry name" value="Ald_DH_CS_CYS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025703">
        <property type="entry name" value="Bifunct_PutA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005933">
        <property type="entry name" value="Delta1-pyrroline-5-COlate_DH-3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029041">
        <property type="entry name" value="FAD-linked_oxidoreductase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024089">
        <property type="entry name" value="PRODH_PutA_dom_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024082">
        <property type="entry name" value="PRODH_PutA_dom_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002872">
        <property type="entry name" value="Proline_DH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01619">
        <property type="entry name" value="Pro_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14850">
        <property type="entry name" value="Pro_dh-DNA_bdg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000197">
        <property type="entry name" value="Bifunct_PutA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51730">
        <property type="entry name" value="SSF51730"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81935">
        <property type="entry name" value="SSF81935"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01238">
        <property type="entry name" value="D1pyr5carbox3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00070">
        <property type="entry name" value="ALDEHYDE_DEHYDR_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0274">FAD</keyword>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="2" id="KW-0520">NAD</keyword>
    <keyword evidence="1 2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2" id="KW-0642">Proline metabolism</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0678">Repressor</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Pro_dh-DNA_bdg" evidence="7">
        <location>
            <begin position="54"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="domain" description="Pro_dh" evidence="6">
        <location>
            <begin position="177"/>
            <end position="467"/>
        </location>
    </feature>
    <feature type="domain" description="Aldedh" evidence="5">
        <location>
            <begin position="533"/>
            <end position="966"/>
        </location>
    </feature>
    <feature type="active site" evidence="3">
        <location>
            <position position="750"/>
        </location>
    </feature>
    <feature type="active site" evidence="3 4">
        <location>
            <position position="784"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR000197"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000197-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01619"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF14850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH35876.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="988" mass="106414" checksum="16A1CE447E4FC7AE" modified="2017-03-15" version="1">MTHFSAPYAPSDEILVPQLIDAIARPAKADANIDKRARDFVNSIRSSASKLGGLEDFLRDFGLSTKEGLALMVMAEALLRVPDAETQNQLIEDKIGAGDWSDTEWLSDTYFVTAATWGLGISNRIVRPTDKPQGIIGATVKRIGAPAVRQGVRQAMRFLGNQFVLGQTIEEAMSKGSASETRGDRHSYDMLGEGARMWDDAKRYAKAYADAIQSIGRKAGNKPLPDRPGISVKLSALHPRFEARNRAAVLQELVPVVVELAQAAKSFDLNFTVDAEEQNRLELSLDVIEAVFADPSLRGWDGFGLAIQAYAKRALPVIDWVVELAKAHQSRMMVRLVKGAYWDAEVKHAQVEGADDFPVFTRKPATDVSFLACAKRMLERRDVLFPQIATHNALTVATVIEMADSSGHRDGFEFQRLHGMGEELYAAVRKQENLPVRIYAPVGGHRDLLAYLVRRLLENGANSSFVAKVGDKDVPVDELLERPSKQLDVPRHPKILRPRKLFGARQNSDGLEFGSRSELDALLEGMNAAPVAAEVLPISPDDIDAMMARAGSAFPKWRDTPAKVRAKILRCAADGLEDNRDALMATLSREAGKTLDDGIAEIREAVDFLRYYADEAETLCVTRELPGPVGEENLYSISGRGVWATVAPWNFPLAIFLGQTAAALATGNCVIAKPAPQTPIIGAQAVEILNAAGLPKDVLQLAPGGAEVGAALVSHPDVAGVAFTGSTATAKVIERTLAAKDGPIVPLVAETGGINALIADATALPEQVCDDVVTSAFRSAGQRCSACRILYVQEDVADRMIDMIVGAAKTLRLGDPFDQATDVGPIIDQNALNRLNGHIAEHKILFQGDAPTEGTFLAPTIIELKRDQKLDKEVFGPVLHIKRFAASDVDKVIDEINSSGFGLTFGLHSRIDARIGYVSERVGAGNIYVNRNQIGAIVGSQPFGGHGLSGTGHKAGGPLYLTKFVEETVISTDTAAAGGNASLIAISE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SC74</accession>
    <name>A0A1M5SC74_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2893</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36116.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902528.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2893"/>
    <dbReference type="EnsemblBacteria" id="SHH36116">
        <property type="protein sequence ID" value="SHH36116"/>
        <property type="gene ID" value="SAMN05444003_2893"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH36116.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="246" mass="28517" checksum="BB590B3621A8C605" modified="2017-03-15" version="1">MHKILALWAVPRSTSTAFEWMMRQRGDLDCLHEPFGETWYQGEAPLWPRWKDGDKITPGLTLESTLADLLQRAERGPVFIKDFPHYIIHMADEAFLAHFDHAFLIRDPAKTITSMYDKWPDFDEGEVGFAQQRALFDKITEIKGTCPPVIDSDDLLEDPHHMVARWCESVNIPFIESALSWEPGARDEVSWWDGGSFHANLRNSDGLKPQKRKYVELADTPARVQDVHSRARPHYDHLYQFRTTAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SDX0</accession>
    <name>A0A1M5SDX0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2908</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36478.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902297.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH36478">
        <property type="protein sequence ID" value="SHH36478"/>
        <property type="gene ID" value="SAMN05444003_2908"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="24"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="47"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH36478.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="224" mass="25630" checksum="B19CE3A7FAAEB516" modified="2017-03-15" version="1">MIDRNTPVLSRDDPDAPPLVGNIKVTQQDWLNIARDVLVHDGVGELKILSLAEKLSVSRSSFYWYFENRSELLDALLTEWETRNSQSIIRHCELPADTIVDAACNFFRCFVDESLFDSRLDFAVREWARRDMSVRDRIDQADARRLAAITAMYARHGFAPDAADARARVLYFMQLGYHALDVRETMETRMARLPQFLECFTGVVPTDEVIVEFSKFAMAQEAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SK83</accession>
    <name>A0A1M5SK83_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized conserved protein, DUF952 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3019</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH39002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902560.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3019"/>
    <dbReference type="EnsemblBacteria" id="SHH39002">
        <property type="protein sequence ID" value="SHH39002"/>
        <property type="gene ID" value="SAMN05444003_3019"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009297">
        <property type="entry name" value="DUF952"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34129">
        <property type="entry name" value="PTHR34129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06108">
        <property type="entry name" value="DUF952"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH39002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="110" mass="12304" checksum="7ABB9EF796BA1027" modified="2017-03-15" version="1">MLIYKIFRSDEWADLQSLSETPGAPIDVADGYIHFSTAETVAETAAKYFAGAEGLVLCALETEGLEPLKWEPAREGVLFPHLYRNIRLTDILWTKPLPLVDGTHQFPELS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SKG0</accession>
    <name>A0A1M5SKG0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Arsenate reductase</fullName>
            <ecNumber evidence="3">1.20.4.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_3017</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>[glutaredoxin]-dithiol + arsenate + glutathione + H(+) = arsenite + glutathionyl-S-S-[glutaredoxin] + H2O</text>
            <dbReference type="Rhea" id="RHEA:22016"/>
            <dbReference type="Rhea" id="RHEA-COMP:10729"/>
            <dbReference type="Rhea" id="RHEA-COMP:17668"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29242"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:48597"/>
            <dbReference type="ChEBI" id="CHEBI:57925"/>
            <dbReference type="ChEBI" id="CHEBI:146199"/>
            <dbReference type="EC" id="1.20.4.1"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 2 3">Belongs to the ArsC family.</text>
    </comment>
    <dbReference type="EC" id="1.20.4.1" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38945.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902558.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3017"/>
    <dbReference type="EnsemblBacteria" id="SHH38945">
        <property type="protein sequence ID" value="SHH38945"/>
        <property type="gene ID" value="SAMN05444003_3017"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008794">
        <property type="term" value="F:arsenate reductase (glutaredoxin) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03034">
        <property type="entry name" value="ArsC_ArsC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006659">
        <property type="entry name" value="Arsenate_reductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006660">
        <property type="entry name" value="Arsenate_reductase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30041">
        <property type="entry name" value="PTHR30041"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03960">
        <property type="entry name" value="ArsC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00014">
        <property type="entry name" value="arsC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51353">
        <property type="entry name" value="ARSC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01282"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU362029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH38945.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="112" mass="12461" checksum="68A9B216AA6C88DF" modified="2017-03-15" version="1">MTTIWHNPRCSKSRQTLALLEENGVQAKIRVYLKERPTEAELRETLAKLGVTAAQIVRTGEKTFKDLELKNADDDTLIAAMVSNPILIERPIVIKGDKAVVGRPPENVLSLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SKI7</accession>
    <name>A0A1M5SKI7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 7">Thymidine phosphorylase</fullName>
            <ecNumber evidence="4 7">2.4.2.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">TdRPase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">deoA</name>
        <name evidence="9" type="ORF">SAMN05444003_2994</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>phosphate + thymidine = 2-deoxy-alpha-D-ribose 1-phosphate + thymine</text>
            <dbReference type="Rhea" id="RHEA:16037"/>
            <dbReference type="ChEBI" id="CHEBI:17748"/>
            <dbReference type="ChEBI" id="CHEBI:17821"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57259"/>
            <dbReference type="EC" id="2.4.2.4"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Pyrimidine metabolism; dTMP biosynthesis via salvage pathway; dTMP from thymine: step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3 7">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.4" evidence="4 7"/>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38423.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902431.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2994"/>
    <dbReference type="EnsemblBacteria" id="SHH38423">
        <property type="protein sequence ID" value="SHH38423"/>
        <property type="gene ID" value="SAMN05444003_2994"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00578">
        <property type="reaction ID" value="UER00638"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004645">
        <property type="term" value="F:1,4-alpha-oligoglucan phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016154">
        <property type="term" value="F:pyrimidine-nucleoside phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009032">
        <property type="term" value="F:thymidine phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006206">
        <property type="term" value="P:pyrimidine nucleobase metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046104">
        <property type="term" value="P:thymidine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1030.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1170.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01628">
        <property type="entry name" value="Thymid_phosp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000312">
        <property type="entry name" value="Glycosyl_Trfase_fam3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017459">
        <property type="entry name" value="Glycosyl_Trfase_fam3_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036320">
        <property type="entry name" value="Glycosyl_Trfase_fam3_N_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035902">
        <property type="entry name" value="Nuc_phospho_transferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036566">
        <property type="entry name" value="PYNP-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013102">
        <property type="entry name" value="PYNP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018090">
        <property type="entry name" value="Pyrmidine_PPas_bac/euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017872">
        <property type="entry name" value="Pyrmidine_PPase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000053">
        <property type="entry name" value="Thymidine/pyrmidine_PPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013465">
        <property type="entry name" value="Thymidine_Pase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10515">
        <property type="entry name" value="PTHR10515"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02885">
        <property type="entry name" value="Glycos_trans_3N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00591">
        <property type="entry name" value="Glycos_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07831">
        <property type="entry name" value="PYNP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000478">
        <property type="entry name" value="TP_PyNP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00941">
        <property type="entry name" value="PYNP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47648">
        <property type="entry name" value="SSF47648"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52418">
        <property type="entry name" value="SSF52418"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54680">
        <property type="entry name" value="SSF54680"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02644">
        <property type="entry name" value="Y_phosphoryl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00647">
        <property type="entry name" value="THYMID_PHOSPHORYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PYNP_C" evidence="8">
        <location>
            <begin position="345"/>
            <end position="419"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01628"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH38423.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="433" mass="44102" checksum="095AD98699A611F1" modified="2017-03-15" version="1">MDARAVISKVRRGDAPERDELIWFAEGLASGHISDAQAGAFAMAVCLNGLGSDGRVALTEGMRDSGDVLSWDLGAPIIDKHSTGGVGDCVSLLLAPMLACCGVYVPMISGRGLGHTGGTLDKLEAIPGVSTDVSEERLRTIVETVGCAIVGATGRIAPADKRLYGVRDVTSTVDSIDLITASILSKKLAAGLDALILDVKTGSGAFMKSEEDARGLAEALVETAKGAGCKTKALVTNMSQPLAPSLGNALEVSVCMDVLSGNAEAAPRLVELSVALGANLLEQAGWERALAKIKLEDALKDGSALKVFANMVSALGGPPDMVEDWRTHLPKAPVVGDVLSPMAGHVAAIDGEALGLSVVGLGGGRKVETDRIDPAVGLSDLVALGAKVEAGQPLATIHAADEDAAERAAQEVLAAVSIGDAPFVGPLIVAEVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SKW6</accession>
    <name>A0A1M5SKW6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">2-dehydro-3-deoxygluconokinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_3024</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH39125.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902472.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3024"/>
    <dbReference type="EnsemblBacteria" id="SHH39125">
        <property type="protein sequence ID" value="SHH39125"/>
        <property type="gene ID" value="SAMN05444003_3024"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016773">
        <property type="term" value="F:phosphotransferase activity, alcohol group as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002173">
        <property type="entry name" value="Carboh/pur_kinase_PfkB_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011611">
        <property type="entry name" value="PfkB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00294">
        <property type="entry name" value="PfkB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="SSF53613"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00584">
        <property type="entry name" value="PFKB_KINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 4" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PfkB" evidence="3">
        <location>
            <begin position="2"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH39125.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="290" mass="31379" checksum="E908B241AE91ADE6" modified="2017-03-15" version="1">MRVVCVGEAMIELSTDGANASLGVAGDTLNTAIYLKRTAPQLDVQYVTALGDDSFSKRILSFMEDHAIGTSVCQVIEGKSPGLYAIETDEFGERSFTYWRSASAAREMFQIDGALDFSALDGANVIYLSAISLAILPQEVRDGLYTYLNQSPARIAFDSNYRPLLWENQEIAQRVISSFWAISDICLPSIDDEMNLFNETAEQVQDRFLGMSKSGALKRGETGPLSLQPNTEEQAFSSAKQVVDSTAAGDSFNGGYLGSILSGSTQSDALQVAHKLASHVIGYRGAIVPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SUL1</accession>
    <name>A0A1M5SUL1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3091</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41673.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902636.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3091"/>
    <dbReference type="EnsemblBacteria" id="SHH41673">
        <property type="protein sequence ID" value="SHH41673"/>
        <property type="gene ID" value="SAMN05444003_3091"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="42"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH41673.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="62" mass="7084" checksum="3CE5AFC1A6FBC0F9" modified="2017-03-15" version="1">MTDFINGLLRFRRGPWEMVASILIATGVLMLMQPFLLVLYTYSFVVTLTGTVMFIIVSHFPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SV49</accession>
    <name>A0A1M5SV49_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">50S ribosomal protein L34</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpmH</name>
        <name evidence="6" type="ORF">SAMN05444003_3120</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the bacterial ribosomal protein bL34 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42138.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_007204042.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3120"/>
    <dbReference type="EnsemblBacteria" id="SHH42138">
        <property type="protein sequence ID" value="SHH42138"/>
        <property type="gene ID" value="SAMN05444003_3120"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00391">
        <property type="entry name" value="Ribosomal_L34"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000271">
        <property type="entry name" value="Ribosomal_L34"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020939">
        <property type="entry name" value="Ribosomal_L34_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14503">
        <property type="entry name" value="PTHR14503"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00468">
        <property type="entry name" value="Ribosomal_L34"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01030">
        <property type="entry name" value="rpmH_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00784">
        <property type="entry name" value="RIBOSOMAL_L34"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 6" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH42138.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="44" mass="5094" checksum="10B70F42DFBE9712" modified="2017-03-15" version="1">MKRTFQPSNRVRKNRHGFRARMATKAGRKILNARRAKGRAKLSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SVF0</accession>
    <name>A0A1M5SVF0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">MOSC domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3136</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42430.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902699.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3136"/>
    <dbReference type="EnsemblBacteria" id="SHH42430">
        <property type="protein sequence ID" value="SHH42430"/>
        <property type="gene ID" value="SAMN05444003_3136"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030151">
        <property type="term" value="F:molybdenum ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005302">
        <property type="entry name" value="MoCF_Sase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005303">
        <property type="entry name" value="MOSC_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011037">
        <property type="entry name" value="Pyrv_Knase-like_insert_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03473">
        <property type="entry name" value="MOSC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03476">
        <property type="entry name" value="MOSC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50800">
        <property type="entry name" value="SSF50800"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51340">
        <property type="entry name" value="MOSC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MOSC" evidence="1">
        <location>
            <begin position="110"/>
            <end position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51340"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH42430.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="251" mass="28042" checksum="A5CA66582EB41655" modified="2017-03-15" version="1">MFTVSDLWRYPIKSHGREHIDTVELTAGQTMPWDRHWAVTHGDSKFDADNPAWVMCRNFMIGASTPSLAGISAELDAEKEALTLRHSKLGELTFWPDKAEDHTRFLDWVRPICPADQRQPFGLAAVPNRGMTDTDYPTVSIMTNASHRAVEGRIGRPLERERWRGNIWLDGPALWEEFEWIGKRIQIGGAVLEVIEPIQRCKHTMANPASGVRDTDTLAALNEGFGHQDFGVYATVVDSGSVSCGDTAKVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-06-02" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SVI2</accession>
    <name>A0A1M5SVI2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3112</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42013.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902665.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH42013">
        <property type="protein sequence ID" value="SHH42013"/>
        <property type="gene ID" value="SAMN05444003_3112"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="124"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="157"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH42013.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="171" mass="19173" checksum="9D346F929C4D81A7" modified="2017-03-15" version="1">MGKSNKRKGEGQYAPLPYGLLKSDAWRDLSGSAAKVFLELHTRYNGSNNCRLTLSYAEASEALGLGKATVQRAFGELAEKGFLVLEREGNWYHRRTHEWRITTKPVQRSKGKELATNDWHRYRRTKTKRGSSLEQQGGAVVPFQNRKPVLGSKSEPVRAKNGSSLGSKSEH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SW35</accession>
    <name>A0A1M5SW35_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">30S ribosomal protein S13</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpsM</name>
        <name evidence="8" type="ORF">SAMN05444003_3157</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Part of the 30S ribosomal subunit. Forms a loose heterodimer with protein S19. Forms two bridges to the 50S subunit in the 70S ribosome.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the universal ribosomal protein uS13 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42791.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902822.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3157"/>
    <dbReference type="EnsemblBacteria" id="SHH42791">
        <property type="protein sequence ID" value="SHH42791"/>
        <property type="gene ID" value="SAMN05444003_3157"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.910.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01315">
        <property type="entry name" value="Ribosomal_S13_S18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027437">
        <property type="entry name" value="30s_Rbsml_prot_S13_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001892">
        <property type="entry name" value="Ribosomal_S13"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010979">
        <property type="entry name" value="Ribosomal_S13-like_H2TH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019980">
        <property type="entry name" value="Ribosomal_S13_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018269">
        <property type="entry name" value="Ribosomal_S13_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10871:SF1">
        <property type="entry name" value="PTHR10871:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00416">
        <property type="entry name" value="Ribosomal_S13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002134">
        <property type="entry name" value="Ribosomal_S13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46946">
        <property type="entry name" value="SSF46946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03631">
        <property type="entry name" value="uS13_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00646">
        <property type="entry name" value="RIBOSOMAL_S13_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50159">
        <property type="entry name" value="RIBOSOMAL_S13_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 5 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="5" id="KW-0820">tRNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="97"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00029533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003830"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH42791.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="122" mass="13540" checksum="1CA0D89FE6DFDC21" modified="2017-03-15" version="1">MARIAGVNIPTAKRVPIALTYIAGIGPTTAKQICEATKIDETRRVNDLSDAEVVSIREFIDANLTVEGDLRREVQMNVKRLMDLGCYRGLRHRRNLPVRGQRTSTNARTRKGPAKAIAGKKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SXB8</accession>
    <name>A0A1M5SXB8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 3">50S ribosomal protein L24</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rplX</name>
        <name evidence="6" type="ORF">SAMN05444003_3173</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.</text>
    </comment>
    <comment type="function">
        <text evidence="3">One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 3 4">Belongs to the universal ribosomal protein uL24 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH43122.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902761.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3173"/>
    <dbReference type="EnsemblBacteria" id="SHH43122">
        <property type="protein sequence ID" value="SHH43122"/>
        <property type="gene ID" value="SAMN05444003_3173"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06089">
        <property type="entry name" value="KOW_RPL26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01326_B">
        <property type="entry name" value="Ribosomal_L24_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005824">
        <property type="entry name" value="KOW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041988">
        <property type="entry name" value="KOW_RPL26/RPL24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014722">
        <property type="entry name" value="Rib_L2_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003256">
        <property type="entry name" value="Ribosomal_L24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005825">
        <property type="entry name" value="Ribosomal_L24/26_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008991">
        <property type="entry name" value="Translation_prot_SH3-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12903">
        <property type="entry name" value="PTHR12903"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00467">
        <property type="entry name" value="KOW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17136">
        <property type="entry name" value="ribosomal_L24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00739">
        <property type="entry name" value="KOW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50104">
        <property type="entry name" value="SSF50104"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01079">
        <property type="entry name" value="rplX_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01108">
        <property type="entry name" value="RIBOSOMAL_L24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 4 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="KOW" evidence="5">
        <location>
            <begin position="4"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00029550"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00739"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH43122.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="101" mass="10657" checksum="E39BA8F1100794A8" modified="2017-03-15" version="1">MAAKLRKGDEVIVLAGKDKGKKGTISSVNPKAGKAVVDGVNIAIRHQKQTQNSQGGRTPQAMPIDLSNLAVVDKNGKASRVGFRMDGDKKVRFAKTTGDAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SYG3</accession>
    <name>A0A1M5SYG3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3192</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH43519.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH43519">
        <property type="protein sequence ID" value="SHH43519"/>
        <property type="gene ID" value="SAMN05444003_3192"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="53"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="85"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH43519.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="150" mass="16810" checksum="A61BBAFCE64BB0A4" modified="2017-03-15" version="1">MRFDLKDLRTKQRIALQFYGVFFALSVGAVLYQIISANFITSDAWATVATIPVYTFSLGAIVAFVVFVLPVWTKQASKLGIGDRIVPIFMIPFTALLAIELGNLAFPTMHAQFFETQREMVFVVREFDKFGARGCSNQRELEGGLSLSDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SYQ8</accession>
    <name>A0A1M5SYQ8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">50S ribosomal protein L4</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rplD</name>
        <name evidence="7" type="ORF">SAMN05444003_3196</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Forms part of the polypeptide exit tunnel.</text>
    </comment>
    <comment type="function">
        <text evidence="5">One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the universal ribosomal protein uL4 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH43605.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902795.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3196"/>
    <dbReference type="EnsemblBacteria" id="SHH43605">
        <property type="protein sequence ID" value="SHH43605"/>
        <property type="gene ID" value="SAMN05444003_3196"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1370.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01328_B">
        <property type="entry name" value="Ribosomal_L4_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002136">
        <property type="entry name" value="Ribosomal_L4/L1e"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023574">
        <property type="entry name" value="Ribosomal_L4_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013005">
        <property type="entry name" value="Ribosomal_uL4/L1e"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10746">
        <property type="entry name" value="PTHR10746"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00573">
        <property type="entry name" value="Ribosomal_L4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52166">
        <property type="entry name" value="SSF52166"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03953">
        <property type="entry name" value="rplD_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 7" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5" id="KW-0699">rRNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="64"/>
            <end position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00019302"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01328"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH43605.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="205" mass="22150" checksum="5708BFF348208D13" modified="2017-03-15" version="1">MKADAIKLDGKKAGSVDLDDAIFGLEPRADILHRMVRWQRNNAQAGTHKVKTRSETSYSTKKIYRQKGTGGARHGDRNAPIFRKGGIYKGPTPRSHGHDLTKKFRKLGLKHALSAKVAAGELVILDSAELKDAKTGALAKQVKDLGWKRTLVIDAAVNENFAAAAANINGVDVLPTMGANVYDILKSDTLVVTKAGVEALEARLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T351</accession>
    <name>A0A1M5T351_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Arylsulfatase A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3212</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="PTM">
        <text evidence="1">The conversion to 3-oxoalanine (also known as C-formylglycine, FGly), of a serine or cysteine residue in prokaryotes and of a cysteine residue in eukaryotes, is critical for catalytic activity.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45116.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902853.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3212"/>
    <dbReference type="EnsemblBacteria" id="SHH45116">
        <property type="protein sequence ID" value="SHH45116"/>
        <property type="gene ID" value="SAMN05444003_3212"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008484">
        <property type="term" value="F:sulfuric ester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000917">
        <property type="entry name" value="Sulfatase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00884">
        <property type="entry name" value="Sulfatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53649">
        <property type="entry name" value="SSF53649"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sulfatase" evidence="2">
        <location>
            <begin position="2"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="modified residue" description="3-oxoalanine (Cys)" evidence="1">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR600917-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH45116.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="552" mass="61983" checksum="54BB0F5B33A467FC" modified="2017-03-15" version="1">MNILFIMYDQLRFDYLSCAGHPTLETPNFDRVAARGVRFTNAYVQSPICGASRMSFYTGRYVSSHGAAWNGFPLRVGEMTMGDHLRKTGMECWLIGKTHMRVDAEGMERLGLTPDSVIGARQAECGFDVWVRDDGLWAQGPDGFYDSNRSPYNEFLKSKGYEAENPWATNANASVDEDGDIASGWMFENADKPANIREEDSETPWLTDQAIEFIDQARAPWCAHVSYIKPHWPYIVPAPYHDMFGPADVPAAVRHDVEREDVHPVLGVFQENKIAAAFQREDVRDKVIPAYMGLIRQCDDQLGRLLDHLEASGRMEDTMIVLTSDHGDYLGDHWLGEKDLFHEPSVKVPLIIYDPRPEAEATRGSVCDALVESIDLAATFVDARGADVPDHILEGRSLLPWLHGETPAWRDYVISEYDYSASGQAVKLGLEPKACRLFMIFDGRYKMMHAEGGFRPMLFDLETDPDEFHDLAKGDSHQHEIDRLYGLLAQWGWRVSQRVTRSDAEIKASRGGSLCKGVLPFLVDGSEVPEELTSIYRGPAGVDYTKGRSGDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T584</accession>
    <name>A0A1M5T584_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Carbohydrate ABC transporter substrate-binding protein, CUT1 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_3239</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial solute-binding protein 1 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45750.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902984.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3239"/>
    <dbReference type="EnsemblBacteria" id="SHH45750">
        <property type="protein sequence ID" value="SHH45750"/>
        <property type="gene ID" value="SAMN05444003_3239"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006059">
        <property type="entry name" value="SBP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13416">
        <property type="entry name" value="SBP_bac_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0574">Periplasm</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012725629" evidence="4">
        <location>
            <begin position="23"/>
            <end position="400"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH45750.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="400" mass="42977" checksum="E204FB0B13A02DA6" modified="2017-03-15" version="1">MKYLTMSLGVALLSSAASMAAAETELHFIMCGGEVRAADQAVVDQFVADNEGVTVNLEAVPWGTCQDKSLTLAAAGDPPSIAYMGSRTLLQLANNDLIVPAQIQDDVQYQTGVLNTVTVSGQEWGYPHAFSTKALYINCDLVEESGQECVAPATWDDMYTMAKGVVDNTDAAGVGLAGKDFDNTMHQFLNYLYSNGGVVIDPATGENMLDSAQTRETLEFYGKLAEVSQEGPTAWERDQLKDLFNDGQIAMYVQGPWGYGQHNEDINQLVAPVPAGPSGESGTILITDSIVVFKGSGHEDLAHELAQRITSGDSQYDLDSSWGLTPILDYAAMGKSDLYYETGVWPNFTATISTGGPEPIVEDFKSLQSVFTNMVQGILLADDTVDNLVTIAAEELDEAM</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T5Y5</accession>
    <name>A0A1M5T5Y5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DNA-binding transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3258</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46177.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902927.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3258"/>
    <dbReference type="EnsemblBacteria" id="SHH46177">
        <property type="protein sequence ID" value="SHH46177"/>
        <property type="gene ID" value="SAMN05444003_3258"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH46177.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="289" mass="31633" checksum="77C4F39B9532D103" modified="2017-03-15" version="1">MKIETLKTFVEVAQSGSLATAAARLGRTPSAVSMSLKLFETDLGQKLFEGERKDRLSPFGKDVFDLAIRQIKQFDATVDAIEARASSEHGLLRISSIPSVAASVFPTLLDQLTVEFPGVRLDLRDADSAQVLAALRDGVADIGIASGSQYFNGLTSSVLFQDRFGLVISANHPLHQSGQDATINGVFSFPFIRNELCDHIKTEAVRDLTSAAPVTIRNTQSLVALIQTGRWLSILPQSVVSILPYDCVFLPIDGFNDVRDVCLYRQQETQYPELLTHCTALIERQFSSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T7J4</accession>
    <name>A0A1M5T7J4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Urease accessory protein UreE</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">ureE</name>
        <name evidence="8" type="ORF">SAMN05444003_3274</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the UreE family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46560.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902954.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3274"/>
    <dbReference type="EnsemblBacteria" id="SHH46560">
        <property type="protein sequence ID" value="SHH46560"/>
        <property type="gene ID" value="SAMN05444003_3274"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016151">
        <property type="term" value="F:nickel cation binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0065003">
        <property type="term" value="P:protein-containing complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019627">
        <property type="term" value="P:urea metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00571">
        <property type="entry name" value="UreE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00822">
        <property type="entry name" value="UreE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012406">
        <property type="entry name" value="UreE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007864">
        <property type="entry name" value="UreE_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004029">
        <property type="entry name" value="UreE_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036118">
        <property type="entry name" value="UreE_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05194">
        <property type="entry name" value="UreE_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02814">
        <property type="entry name" value="UreE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036402">
        <property type="entry name" value="Ureas_acces_UreE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00988">
        <property type="entry name" value="UreE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69287">
        <property type="entry name" value="SSF69287"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0143">Chaperone</keyword>
    <keyword evidence="2 5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 5" id="KW-0533">Nickel</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UreE_N" evidence="7">
        <location>
            <begin position="5"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="135"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="140"/>
            <end position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022596"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00822"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00988"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH46560.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="156" mass="17731" checksum="7BA1DAA4345A0CF7" modified="2017-03-15" version="1">MPDFVAQDIKRAGDWSGSFELCVMTYDERFLRRKVVKTAHDENLLVDLKQTTSINDHDAFVLTDGRLIEVIAAEEELYKVTGDLVQLAWHIGNRHTPCQIEENRLLIQRDKVIGHMLEHLGATVTEVFEPFTPEGGAYGHGRTHSHEHGHSAHHDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TBU3</accession>
    <name>A0A1M5TBU3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">L-glutamine synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_3308</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the glutamine synthetase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000009">
        <property type="protein sequence ID" value="SHH47813.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072903024.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000009.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3308"/>
    <dbReference type="EnsemblBacteria" id="SHH47813">
        <property type="protein sequence ID" value="SHH47813"/>
        <property type="gene ID" value="SAMN05444003_3308"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004356">
        <property type="term" value="F:glutamate-ammonia ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006542">
        <property type="term" value="P:glutamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009399">
        <property type="term" value="P:nitrogen fixation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036651">
        <property type="entry name" value="Gln_synt_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014746">
        <property type="entry name" value="Gln_synth/guanido_kin_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008146">
        <property type="entry name" value="Gln_synth_cat_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00120">
        <property type="entry name" value="Gln-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01230">
        <property type="entry name" value="Gln-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54368">
        <property type="entry name" value="SSF54368"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55931">
        <property type="entry name" value="SSF55931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0535">Nitrogen fixation</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Gln-synt_C" evidence="4">
        <location>
            <begin position="113"/>
            <end position="366"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU000384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM01230"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH47813.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="449" mass="49775" checksum="A09B4AE617AA7941" modified="2017-03-15" version="1">MTFEEIKSQIAAGDIDTVLTCIVDMQGRLMGKRFHAEAFLEMAVGETHCCNYLLATDLEMATPDGYASTSWEAGYGDYIMKPDLSTIRPVPWLEGAAMVLCDVLDHHTHEPVPFAPREVLKRQIARAEAMGLTPIMATELEFFLFQGTHDEIAASGYDLKPISRYNEDYHIFQTTKEEPVMRPIRNHLRSMGIPVEGSKGEAEAGQEELNIKYADALAAADHHTIAKHGIKEIAHQQGYAATFIPKWHHDRVGSAAHVHQSLWSNGANAFYDADAPLAKSALMDHYMAGMLTYASDITVFLAPYINSYKRFAKGSFAPTQAVWSVDNRTAAFRLCGDGTKGVRVECRTPGSDMNPYLAMAAMLAAGLKGVEEKLELPAPFTGDAYADDDANHIPRTLRDAREALLASDMLKEAFGEETVTHYARAAEWEIEEFNRVVTDYEIARGFEKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L580</accession>
    <name>A0A1M5L580_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0114</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60274.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898471.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0114"/>
    <dbReference type="EnsemblBacteria" id="SHG60274">
        <property type="protein sequence ID" value="SHG60274"/>
        <property type="gene ID" value="SAMN05444003_0114"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG60274.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="333" mass="38484" checksum="5CF2AADB194FE9DE" modified="2017-03-15" version="1">MARTIAFNQPFNILIVGQAGRLQYEALLFVASLKAMSPTLKGRIFVAEPQFTNRWEKDPRMLGDIRDVLKENGAKILPFENEHFGQSYPYGNKIEALLALPEGEPFVFFDTDTLITGDLSTVPFDFERPSASMRREGTWPVEELYWPGYTAIWKSLYNKFGLDFESSLDLSQPDEFWERYLYFNAGWFFGKCPRQFGQRFLDFALKIRDDTPEEMIIQPLDPWLDQVSLPLVIHSFGGGRPDTTLNGLDGAITCHYRTIPLLYARESDHTVAILESVSAPNKIKKWLKNYDAFKRTIYQGRGQKVRALFDQANLPRPERKLRNKIKAAGYWMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L769</accession>
    <name>A0A1M5L769_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Sarcosine oxidase subunit gamma</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0142</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60887.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898499.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0142"/>
    <dbReference type="EnsemblBacteria" id="SHG60887">
        <property type="protein sequence ID" value="SHG60887"/>
        <property type="gene ID" value="SAMN05444003_0142"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027266">
        <property type="entry name" value="TrmE/GcvT_dom1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG60887.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="187" mass="19531" checksum="DA547A49392EC7BC" modified="2017-03-15" version="1">MHSLSPITALGGQTPKITTIGSINVSEIDSLALASIATRKGGKTVTEKVLKSMIGSVPAVGKTCSKGSFSGFWMGPDQWMITAPLETHETIADDLVAAVVSKASVTEQTGAWAIFDISGAAMPDVCERLCAVPIREMNVGDVCRTSIHQLGCFVTPMNSGNTLRVVGPRASARSLYHAIEVAAKSVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L819</accession>
    <name>A0A1M5L819_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Maltose O-acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0155</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61158.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898515.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0155"/>
    <dbReference type="EnsemblBacteria" id="SHG61158">
        <property type="protein sequence ID" value="SHG61158"/>
        <property type="gene ID" value="SAMN05444003_0155"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001451">
        <property type="entry name" value="Hexapep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018357">
        <property type="entry name" value="Hexapep_transf_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00132">
        <property type="entry name" value="Hexapep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="SSF51161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00101">
        <property type="entry name" value="HEXAPEP_TRANSFERASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="1 4" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG61158.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="195" mass="21082" checksum="6B417DA0B43EF007" modified="2017-03-15" version="1">MTEYEKLLAGQPYNPRDPEISEKQMAGIAAKAALEEIPETDIFAWIQALTKVFGQMNEPSFVMPPFTISFGSHVRLGKWCFVNRGATFLDDNLITLGDHVAVGPNVQFITATHPLRSEDRIKLKPDQFPPFEVVNIAHPITVGDFAWIGAGAIIMPGVTIGARAVVGAGSVVTKDVPPNMVVAGNPAKIMKSVDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LLR4</accession>
    <name>A0A1M5LLR4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Glutamate--tRNA ligase</fullName>
            <ecNumber evidence="8">6.1.1.17</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Glutamyl-tRNA synthetase</fullName>
            <shortName evidence="8">GluRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">gltX</name>
        <name evidence="12" type="ORF">SAMN05444003_0370</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>ATP + L-glutamate + tRNA(Glu) = AMP + diphosphate + L-glutamyl-tRNA(Glu)</text>
            <dbReference type="Rhea" id="RHEA:23540"/>
            <dbReference type="Rhea" id="RHEA-COMP:9663"/>
            <dbReference type="Rhea" id="RHEA-COMP:9680"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78520"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.17"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="8">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.17" evidence="8"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66092.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0370"/>
    <dbReference type="EnsemblBacteria" id="SHG66092">
        <property type="protein sequence ID" value="SHG66092"/>
        <property type="gene ID" value="SAMN05444003_0370"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004818">
        <property type="term" value="F:glutamate-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006424">
        <property type="term" value="P:glutamyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00808">
        <property type="entry name" value="GluRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.350">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00022">
        <property type="entry name" value="Glu_tRNA_synth_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045462">
        <property type="entry name" value="aa-tRNA-synth_I_cd-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020751">
        <property type="entry name" value="aa-tRNA-synth_I_codon-bd_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001412">
        <property type="entry name" value="aa-tRNA-synth_I_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008925">
        <property type="entry name" value="aa_tRNA-synth_I_cd-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004527">
        <property type="entry name" value="Glu-tRNA-ligase_bac/mito"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000924">
        <property type="entry name" value="Glu/Gln-tRNA-synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020058">
        <property type="entry name" value="Glu/Gln-tRNA-synth_Ib_cat-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033910">
        <property type="entry name" value="GluRS_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19269">
        <property type="entry name" value="Anticodon_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00749">
        <property type="entry name" value="tRNA-synt_1c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00987">
        <property type="entry name" value="TRNASYNTHGLU"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48163">
        <property type="entry name" value="SSF48163"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00464">
        <property type="entry name" value="gltX_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00178">
        <property type="entry name" value="AA_TRNA_LIGASE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8 9" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="5 8 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 8 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 8 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 8 9" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="tRNA-synt_1c" evidence="10">
        <location>
            <begin position="3"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="domain" description="Anticodon_2" evidence="11">
        <location>
            <begin position="336"/>
            <end position="462"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region" evidence="8">
        <location>
            <begin position="9"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="8">
        <location>
            <begin position="237"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="240"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001818"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00022"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU363037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF19269"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG66092.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="464" mass="51427" checksum="2CAA11E91A0883EE" modified="2017-03-15" version="1">MTVVTRFAPSPTGSLHIGGARTALFNWLYARGRGGKFLLRIEDTDRARSSDENTQAILDGLTWLGLDWDGEPSSQFANAERHAEVAHELLANGKAYKCFSTQDEIEAFREMARAENTSTLFRSPWRDVAEEDHPDAPYVVRIKAPREGSTTLHDEVQGDVTWQNDQLDDMILLRSDGTPVYMLAVVVDDHDMGVTHIIRGDDHLVNAFRQNLIYEAMGWDKPVLAHIPLIFGPDGKKLSKRHGATGAAEYQKMGYPAAGMRNYLARLGWSHGDDEFFTDAQAKEWFDLDGIGKSPARFDFKKLENICGQHIAASDDAALLHEIKAFLAVTGADPLTDTQSHGLLTAMYCLKDRAKTFPQLLEKAHFVLAERPLERDERSDKMLDTVSRGILSELTPQLQNASWDRDTLEGLVAALAEAHDTKLGKLAGPLRAALAGRSVSPSVFDMMLVIGRDETIARLEEASA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LMI3</accession>
    <name>A0A1M5LMI3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Anthranilate phosphoribosyltransferase</fullName>
            <ecNumber evidence="4">2.4.2.18</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">trpD</name>
        <name evidence="7" type="ORF">SAMN05444003_0377</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the transfer of the phosphoribosyl group of 5-phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>diphosphate + N-(5-phospho-beta-D-ribosyl)anthranilate = 5-phospho-alpha-D-ribose 1-diphosphate + anthranilate</text>
            <dbReference type="Rhea" id="RHEA:11768"/>
            <dbReference type="ChEBI" id="CHEBI:16567"/>
            <dbReference type="ChEBI" id="CHEBI:18277"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="EC" id="2.4.2.18"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="4">Binds 2 magnesium ions per monomer.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4">Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 2/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the anthranilate phosphoribosyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.18" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66235.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898848.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0377"/>
    <dbReference type="EnsemblBacteria" id="SHG66235">
        <property type="protein sequence ID" value="SHG66235"/>
        <property type="gene ID" value="SAMN05444003_0377"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00035">
        <property type="reaction ID" value="UER00041"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004048">
        <property type="term" value="F:anthranilate phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000162">
        <property type="term" value="P:tryptophan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1030.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00211">
        <property type="entry name" value="TrpD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005940">
        <property type="entry name" value="Anthranilate_Pribosyl_Tfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000312">
        <property type="entry name" value="Glycosyl_Trfase_fam3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017459">
        <property type="entry name" value="Glycosyl_Trfase_fam3_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036320">
        <property type="entry name" value="Glycosyl_Trfase_fam3_N_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035902">
        <property type="entry name" value="Nuc_phospho_transferase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43285">
        <property type="entry name" value="PTHR43285"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02885">
        <property type="entry name" value="Glycos_trans_3N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00591">
        <property type="entry name" value="Glycos_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47648">
        <property type="entry name" value="SSF47648"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52418">
        <property type="entry name" value="SSF52418"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01245">
        <property type="entry name" value="trpD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="4" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="1 4 7" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4 7" id="KW-0808">Transferase</keyword>
    <keyword evidence="3 4" id="KW-0822">Tryptophan biosynthesis</keyword>
    <feature type="domain" description="Glycos_trans_3N" evidence="6">
        <location>
            <begin position="15"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="domain" description="Glycos_transf_3" evidence="5">
        <location>
            <begin position="76"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="region of interest" description="Phosphoribosylpyrophosphate binding" evidence="4">
        <location>
            <begin position="84"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="region of interest" description="Phosphoribosylpyrophosphate binding" evidence="4">
        <location>
            <begin position="91"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="region of interest" description="Phosphoribosylpyrophosphate binding" evidence="4">
        <location>
            <begin position="109"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="81"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="89"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="93"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="112"/>
        </location>
        <ligand>
            <name>anthranilate</name>
            <dbReference type="ChEBI" id="CHEBI:16567"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="121"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="167"/>
        </location>
        <ligand>
            <name>anthranilate</name>
            <dbReference type="ChEBI" id="CHEBI:16567"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="226"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="227"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022822"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00591"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG66235.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="339" mass="34700" checksum="C4194461D037C20A" modified="2017-03-15" version="1">MSDAMKPLIFAASEGPLSRVQAEAAFVLLFDGEALPSQIGGLLMAMRARGESVAEYAAAAAVMRDRCNPVAAPEGAIDIVGTGGDGMKTLNISTATAFVVAGAGVPVAKHGNKNLSSLSGAGDILTEMGVNIMVGPEVVEAALKEANIGFMMAPMHHPAVRHVMPVRQELGCKTIFNILGPLTNPAGAKRQLTGAFAPDLIFPMAETLKELGSEAAWLVHGSDGTDELTICGTSAVAALTPDGKIVSKEVHPEDAGLPEHPFKDILGGTPAENAEAFRAILDGAQNAYRDAVLFNAAAALVVAERASDLKEGVGLAAESIDSGKAKAAVEALARVTSAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LRH6</accession>
    <name>A0A1M5LRH6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0438</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67648.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898934.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0438"/>
    <dbReference type="EnsemblBacteria" id="SHG67648">
        <property type="protein sequence ID" value="SHG67648"/>
        <property type="gene ID" value="SAMN05444003_0438"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG67648.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="89" mass="9994" checksum="665D35D2C4C7DCC5" modified="2017-03-15" version="1">MKGDLLDPKGLFREAYRIDGITAGECRSIFLDWALGVPLGEDTEERVQKLLTQYADQPEDHPMTQTLVAALRKTEPARRRGGRAGRLAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LTZ8</accession>
    <name>A0A1M5LTZ8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Methylmalonate-semialdehyde dehydrogenase [acylating]</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0448</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67863.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898953.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0448"/>
    <dbReference type="EnsemblBacteria" id="SHG67863">
        <property type="protein sequence ID" value="SHG67863"/>
        <property type="gene ID" value="SAMN05444003_0448"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004491">
        <property type="term" value="F:methylmalonate-semialdehyde dehydrogenase (acylating) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07085">
        <property type="entry name" value="ALDH_F6_MMSDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016160">
        <property type="entry name" value="Ald_DH_CS_CYS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010061">
        <property type="entry name" value="MeMal-semiAld_DH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43866">
        <property type="entry name" value="PTHR43866"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01722">
        <property type="entry name" value="MMSDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00070">
        <property type="entry name" value="ALDEHYDE_DEHYDR_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="3">
        <location>
            <begin position="14"/>
            <end position="479"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="281"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG67863.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="499" mass="53536" checksum="CBA17FFEC67F3849" modified="2017-03-15" version="1">MQELTHYINGEHVKGTSGRFADVFNPATGEVQAKVPLASTQEMELAVAVAASAQPAWAAVNPQRRARVMMKFVALLQRDMDKLAEALSREHGKTLPDAAGDVQRGLEVVEYCIGAPHMLKGEFTDSAGPGIDMYSMKQPLGVTAGITPFNFPAMIPMWMFAPAIVCGNSFILKPSERDPSVPLMLAELMEEAGLPKGVLQVVNGDKEAVDAILNNDTIQSVGFVGSTPIAEYIYGTGCAQGKRVQCFGGAKNHMIIMPDADMDQAADALVGAGYGAAGERCMAISVAVPVGDETADRLIEKLVPRVEALKVGPYTAGNDVDYGPVVTGAAKANIERLVQTGIDQGAKLVVDGRDFSLQGYEDGFFVGAHLFDNVTKDMDIYKTEIFGPVLSTVRAQSYEEAIGLAMDHEYGNGTAIFTRDGDTARDFANRINIGMVGVNVPIPVPLAYHTFGGWKKSVFGDLNQHGPDAFKFYTRTKTVTSRWPSGIKEGGEFSIPVME</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LVE4</accession>
    <name>A0A1M5LVE4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="9">DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_0499</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69038.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899022.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0499"/>
    <dbReference type="EnsemblBacteria" id="SHG69038">
        <property type="protein sequence ID" value="SHG69038"/>
        <property type="gene ID" value="SAMN05444003_0499"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002197">
        <property type="entry name" value="HTH_Fis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002078">
        <property type="entry name" value="Sigma_54_int"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025662">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025944">
        <property type="entry name" value="Sigma_54_int_dom_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02954">
        <property type="entry name" value="HTH_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00158">
        <property type="entry name" value="Sigma54_activat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00675">
        <property type="entry name" value="SIGMA54_INTERACT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00688">
        <property type="entry name" value="SIGMA54_INTERACT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50045">
        <property type="entry name" value="SIGMA54_INTERACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="4" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="3" id="KW-0902">Two-component regulatory system</keyword>
    <feature type="domain" description="Response regulatory" evidence="8">
        <location>
            <begin position="6"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma-54 factor interaction" evidence="7">
        <location>
            <begin position="146"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="6">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG69038.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="445" mass="48947" checksum="90C0FF92B5B58CA3" modified="2017-03-15" version="1">MGKAMKIAIVDDERDMRQSISQWLSLSGFETETFASAEDALRGVGSDFPGIVVSDIKMPGMDGMQFLKKLKGVDSQLPVIMITGHGDVPMAVEAMRVGAFDFLEKPFNPDRMTELAKKATNARRLTLDNRALRKELSDGASLIKKLIGQSPPMERLKEDILDLGQADGHVLIEGETGTGKTLVAHALHAVGARASKQFTLISCSAFDEDSLARRLFGPAEEGEPIPAIEEARGGTLVLEDIEALSDKLQARLLTAINDQGVPAETRIVAICNLQEQDKTCEDVLRPDLFYRLAALKITVPPLRQRGEDILTLFTRLSEQFADEYGCDAPEVSAQEAAQLLQAPWPGNVRQLINVAERAVLQNRRGTGSIASLLMADTEEAKPAITTEGKPLKEFVEAFERMLIDNTMRRHKGSIVSVMEELCLPRRTLNEKMAKYGLQRSDYLDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LW24</accession>
    <name>A0A1M5LW24_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">N-methylhydantoinase A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0478</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68563.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898993.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0478"/>
    <dbReference type="EnsemblBacteria" id="SHG68563">
        <property type="protein sequence ID" value="SHG68563"/>
        <property type="gene ID" value="SAMN05444003_0478"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008040">
        <property type="entry name" value="Hydant_A_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002821">
        <property type="entry name" value="Hydantoinase_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045079">
        <property type="entry name" value="Oxoprolinase_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11365">
        <property type="entry name" value="PTHR11365"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05378">
        <property type="entry name" value="Hydant_A_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01968">
        <property type="entry name" value="Hydantoinase_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hydant_A_N" evidence="2">
        <location>
            <begin position="7"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="domain" description="Hydantoinase_A" evidence="1">
        <location>
            <begin position="204"/>
            <end position="498"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG68563.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="692" mass="74435" checksum="BBD478CC49D6F9F0" modified="2017-03-15" version="1">MKSASIRMGVDIGGTFTDVVLEKHGEVFSTKVLTTYGAPEDAIIDGMRQVCALCAIEPSAIEQIIHGTTLATNALIERRGAKTALITTQGFRDVIEMRTESRFEQYDLNLTLPEPLLPRQMRFTVQERVNAKGEIMIDLDPAEVERVVDQIEEAGFTSVAIGLIHSYLNPKHEQMVRDILQARLPDVSVSISSEVSPQMREYERFNTVVANAYIKPLMSSYLGRLEARLAGEGVTCRIFLMHSGGGIISIQNASDFPVRLVESGPAGGAVFAAHIAARYGLDKVLSFDMGGTTAKICLIKDQTPKTSRVFEVARTYRFKKGSGMPISIPVIDMVEIGAGGGSLAHVDALNQIRVGPESAGSEPGPACYGRGGDRPGVTDADLVLGKLDPDNFAGGSIQLHPDNSRAALAAHVGDQLDMEAVEAAHGVAEVVDENMANAARVHAVENGEDLSEYTMIAFGGAAPLHAGRLCEKLGVDRLIVPPGAGVGSAIGFLRATFSFEANRSVYMKLSDFDPEVIKALLTELREEATGFVRTCDAEPEILSEFKVYMRYTGQGWEIPISLTEAQAMKPDVSVFESRFEEDYTKLFGRPVAGMDIEITVWSVNATTPQEQVDLIDVERGGGVASAEGQRPVFDAAEGAYLDADVVLRDGMVTGAVAQGPVAITEDETTIIVPASRKAIRQPDGCIDVVKKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LWV9</accession>
    <name>A0A1M5LWV9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ATP diphosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0520</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69486.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899043.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0520"/>
    <dbReference type="EnsemblBacteria" id="SHG69486">
        <property type="protein sequence ID" value="SHG69486"/>
        <property type="gene ID" value="SAMN05444003_0520"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004518">
        <property type="entry name" value="MazG_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011551">
        <property type="entry name" value="NTP_PyrPHydrolase_MazG"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30522">
        <property type="entry name" value="PTHR30522"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03819">
        <property type="entry name" value="MazG"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00444">
        <property type="entry name" value="mazG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MazG" evidence="1">
        <location>
            <begin position="37"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="domain" description="MazG" evidence="1">
        <location>
            <begin position="178"/>
            <end position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG69486.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="273" mass="30620" checksum="7C113F853D5ECCE2" modified="2017-03-15" version="1">MPNDPLIHDPNGGMPRLLEIMRRLRDPETGCPWDIEQDFASIAPYTIEEAYEVADAIERSDWAELEGELGDLLLQTVYHTQMGSEAGHFTFDSVVKNIADKMVHRHPHVFGDESRDKSAEQQTADWEKIKAAERAGKQQARTLDGVAVGLPALTRAVKLQKRAARVGFDWPEIGMVVDKLIEEAAELSEARDTLSQAEVTEEFGDLMFVLANLGRHLNVDPEEALRSANAKFIRRFEQIEDDLAAMGKTPAESNLEEMDSLWDTAKAREKASY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LXE4</accession>
    <name>A0A1M5LXE4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Lipopolysaccharide export system permease protein LptF</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_0534</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69782.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0534"/>
    <dbReference type="EnsemblBacteria" id="SHG69782">
        <property type="protein sequence ID" value="SHG69782"/>
        <property type="gene ID" value="SAMN05444003_0534"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030922">
        <property type="entry name" value="LptF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005495">
        <property type="entry name" value="LptG/LptF_permease"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33529">
        <property type="entry name" value="PTHR33529"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03739">
        <property type="entry name" value="LptF_LptG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04407">
        <property type="entry name" value="LptF_YjgP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="5"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="96"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="273"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="304"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="331"/>
            <end position="352"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00014213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG69782.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="367" mass="40905" checksum="CC98E9150EC6C9FF" modified="2017-03-15" version="1">MLSQLIMLFGFFSLILVMVYWINRAVSLFDQLIADGQSAVVFLEFTALSLPNLVRLVLPIAAFAGSVYVTNRMANESELVVVQATGYSPFRLARPVFVYGVFVALLMSLLVHLLVPLSITRLNDRTAEVAQNATVRILTEGQFMEPTDGVTVYIREITPNNELRNLFLSDQRDPNSHVTYTASRAYVVRTDTETQLIMVDGLAQTLNTETNKLFTTSFDDFAYNVGDLMNVSRSDRRSFREVSTLKLLSPTPSLEEETRRTEAELKAAAHDRISQSLLALVAAMLGFSALMIGGYSRFGVWQQIVFAIFLIIVIKGLETVGLNIARQDPDLWIASYLAVGVGLVIVLLLLFFASKPSLFRRRVRATA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LXQ8</accession>
    <name>A0A1M5LXQ8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cytochrome P450</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0506</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69183.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899029.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0506"/>
    <dbReference type="EnsemblBacteria" id="SHG69183">
        <property type="protein sequence ID" value="SHG69183"/>
        <property type="gene ID" value="SAMN05444003_0506"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002401">
        <property type="entry name" value="Cyt_P450_E_grp-I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00463">
        <property type="entry name" value="EP450I"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00385">
        <property type="entry name" value="P450"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="SSF48264"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG69183.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="450" mass="50769" checksum="CA7DDA2293C8C7EC" modified="2017-03-15" version="1">MTRPPKPDHRPETVSLWQHLRLFRRDILSAQPEKLYRAWMAEFRTPFFRSFLVNDPEVIKTVLKDRPDDFPKSERVGVGLRPLLGNSVFLTNGEEWKRQRRIIDPAFEGGRLKSAFPAILSAGEAAVDRLRPLANGATVDVEPITSHLAADVIFRSLFSIPIEDELATRTFEAFRAHQRSQPIVNLSAFLSGPNWMPKLFRKETTETAEEIRGLIAKLVERRADRIAKGSAPDDLATKIMTMKDPETGEGFSSDEIVDQVAIFFLAGHETSAAALSWALYLLALDPEWQERLRDEASEFSGEFAGLSKLAVTRDVFRETLRLYPPVPMMVREAAQPEIFRKRPVPKSSQIIVSPWHLHRQNRLWGDPDEFRPDRWSSPNGKECSQKAYLPFSAGPRVCTGAGFAMMEGVLLLSKLVGAFAFEVDNSRPPVPVAQLTVRSKDGIFLKIRPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LYN1</accession>
    <name>A0A1M5LYN1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Lipopolysaccharide export system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0533</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69759.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899067.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0533"/>
    <dbReference type="EnsemblBacteria" id="SHG69759">
        <property type="protein sequence ID" value="SHG69759"/>
        <property type="gene ID" value="SAMN05444003_0533"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030923">
        <property type="entry name" value="LptG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005495">
        <property type="entry name" value="LptG/LptF_permease"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33529">
        <property type="entry name" value="PTHR33529"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03739">
        <property type="entry name" value="LptF_LptG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04408">
        <property type="entry name" value="LptG_lptG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="59"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="100"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="275"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="309"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="337"/>
            <end position="359"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG69759.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="364" mass="39840" checksum="64338B61FF4AD0D9" modified="2017-03-15" version="1">MILDRYFARRFFWTFAGVFGVFFLILAFIGLVEQLRRLSNFDASFADVLRLSALSLPEALYGILPLVMIIATITLFLGLARSSEMVVTRAAGRGALRAMVPPLIVALMIGIFAVAILNPIVAATSKQFEVQNDAIRGEGSVLSIGATGLWLRQGNEDSQTVIHAESANLNGTEMRDATFTTFSPDGVPTRRITAETAELQEGEWVLTNVKSWPLFRDGVPEASATYHETLTVPSTLTPDQIRDSFGTPSSIPIWDLPAFIQRLQKAGFSAQRHQVWFQMELALPLFLVSMVLIGAAFTLRHQRGGRTGLMVMLAIMLSFGIYFLRNFSQILGENGQIPAVLAAWAPPLAAIGLAMGLLLHNEDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M0C3</accession>
    <name>A0A1M5M0C3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Murein L,D-transpeptidase YcbB/YkuD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0561</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the YkuD family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70379.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0561"/>
    <dbReference type="EnsemblBacteria" id="SHG70379">
        <property type="protein sequence ID" value="SHG70379"/>
        <property type="gene ID" value="SAMN05444003_0561"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071972">
        <property type="term" value="F:peptidoglycan L,D-transpeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd16913">
        <property type="entry name" value="YkuD_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.101.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005490">
        <property type="entry name" value="LD_TPept_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045380">
        <property type="entry name" value="LD_TPept_scaffold_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002477">
        <property type="entry name" value="Peptidoglycan-bd-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036365">
        <property type="entry name" value="PGBD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036366">
        <property type="entry name" value="PGBDSf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038063">
        <property type="entry name" value="Transpep_catalytic_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01471">
        <property type="entry name" value="PG_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20142">
        <property type="entry name" value="Scaffold"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03734">
        <property type="entry name" value="YkuD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141523">
        <property type="entry name" value="SSF141523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47090">
        <property type="entry name" value="SSF47090"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Scaffold" evidence="6">
        <location>
            <begin position="53"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="domain" description="PG_binding_1" evidence="4">
        <location>
            <begin position="216"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="domain" description="YkuD" evidence="5">
        <location>
            <begin position="299"/>
            <end position="465"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF03734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF20142"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG70379.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="540" mass="61476" checksum="CA0386A8560F87B2" modified="2017-03-15" version="1">MGMMFVHWRFFDLNLRILAPAIVAVSLILPTAIAAQVTAFRQAVAEAAARDDDLAAFYRDRNFEGIWTGSDEQAQERRNTFLTVLDGTDAHGLPPERYNTSNVMAMLREARTPEQQGKVEVELSRLLLQYARDVQSGILVPGNVDELIKREVAYRDRLETIEEFAAANAGTFLRALPPSSPEYSRLMREKIELEAGLLNGGWGPRVNGRKLELGDSGQAVVALRNRLISMGYLPRTASQTYDEALEMAVRKFQEMHGLEVDGTAGEGTLEQINVSMERRLQSVLVAMERERWINHEKGDRHIWVNLTDFTARIVDNDVVTFQTRSVIGANDADRQSPEFSDVMEFMVINPSWYVPRSIMTKEYLPQLQRNPNAVRHLEITDRRGRVVNRANVDFTQFTRRNFPFSMRQPPSRSNALGLVKFMFPNQYNIYLHDTPAKNLFSRETRAYSHGCIRLNDPFDFAYELLALQEVDPEGFFQAKLGTGRENRVDLEQPVPVHLVYRTAFTDALGNLQFRRDVYGRDARVWQALAREGVAISAVQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M0N2</accession>
    <name>A0A1M5M0N2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0578</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70730.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899129.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0578"/>
    <dbReference type="EnsemblBacteria" id="SHG70730">
        <property type="protein sequence ID" value="SHG70730"/>
        <property type="gene ID" value="SAMN05444003_0578"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003313">
        <property type="entry name" value="AraC-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037923">
        <property type="entry name" value="HTH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020449">
        <property type="entry name" value="Tscrpt_reg_HTH_AraC-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02311">
        <property type="entry name" value="AraC_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00032">
        <property type="entry name" value="HTHARAC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51215">
        <property type="entry name" value="SSF51215"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="1">
        <location>
            <begin position="171"/>
            <end position="269"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG70730.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="275" mass="30475" checksum="EEECFE9C5A2ED459" modified="2017-03-15" version="1">MIPATEHQDALLALAPIARNPHVGKWRTEAMRSHATPRLLYIAKGQGRITIAGLTRGYGANNLIFIPAHTMYGYEIGPTVFGQMLNIPTAMAPEWPDEPVHLRLRDVAAQKDFLALIDGLERELSSDLESNQRAAHYRLGLISVFFERQLAGFENAPADANAETSSARVVAAYTDLIERDYRRDLGVADFAHALGVTPTHLTRCCKVTCGRSALALLNDRKHYEACILLRESKQTIQSISEDLGFSSAAYFSRAFQSRAGRSPSQFRRFGSKNLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M1K3</accession>
    <name>A0A1M5M1K3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0596</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG71141.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899150.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG71141">
        <property type="protein sequence ID" value="SHG71141"/>
        <property type="gene ID" value="SAMN05444003_0596"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG71141.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="115" mass="12694" checksum="7D0BFE2521C72A45" modified="2017-03-15" version="1">MGIIRLIIILCAIPTVVSSETLALECSGTNPDWTLSYDEETARFAFLDRESDLQVPQKSTAEGVEWPKAATLVGPRDSAIIILHNRQCGTEEYELQILTQRGESPILLTGCCSRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M2I0</accession>
    <name>A0A1M5M2I0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Phosphatidylglycerophosphatase A</fullName>
            <ecNumber evidence="1">3.1.3.27</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Phosphatidylglycerolphosphate phosphatase A</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0607</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycero-3'-phosphate) + H2O = 1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycerol) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:33751"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:60110"/>
            <dbReference type="ChEBI" id="CHEBI:64716"/>
            <dbReference type="EC" id="3.1.3.27"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="1">Phospholipid metabolism; phosphatidylglycerol biosynthesis; phosphatidylglycerol from CDP-diacylglycerol: step 2/2.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EC" id="3.1.3.27" evidence="1"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG71436.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899161.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0607"/>
    <dbReference type="EnsemblBacteria" id="SHG71436">
        <property type="protein sequence ID" value="SHG71436"/>
        <property type="gene ID" value="SAMN05444003_0607"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00084">
        <property type="reaction ID" value="UER00504"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008962">
        <property type="term" value="F:phosphatidylglycerophosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006655">
        <property type="term" value="P:phosphatidylglycerol biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009395">
        <property type="term" value="P:phospholipid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06971">
        <property type="entry name" value="PgpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026037">
        <property type="entry name" value="PgpA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036681">
        <property type="entry name" value="PgpA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007686">
        <property type="entry name" value="YutG/PgpA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36305">
        <property type="entry name" value="PTHR36305"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04608">
        <property type="entry name" value="PgpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006162">
        <property type="entry name" value="PgpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101307">
        <property type="entry name" value="SSF101307"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0442">Lipid degradation</keyword>
    <keyword evidence="1" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="1" id="KW-0460">Magnesium</keyword>
    <keyword evidence="1 2" id="KW-0472">Membrane</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0595">Phospholipid degradation</keyword>
    <keyword evidence="1" id="KW-1208">Phospholipid metabolism</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="29"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="98"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="136"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="domain" description="PgpA" evidence="3">
        <location>
            <begin position="3"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR006162"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF04608"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG71436.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="162" mass="17176" checksum="CEA1DD7F1B94A1DE" modified="2017-03-15" version="1">MSKLIATFFYVGHLKPAPGTWGSLAALPAAYVITLIGSWPLLALCAAIAYFAGLWATKVETAGKENHDPSEIVIDEVVGQWIALLPVIYGAASSGSNLLALWPGWIAAFVLFRLFDITKPSLVGWADKRDDAVGVMLDDVIAGIMAAIGVLILAALFHLVLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-09-29" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M8P2</accession>
    <name>A0A1M5M8P2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Citrate transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_0698</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73647.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899315.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG73647">
        <property type="protein sequence ID" value="SHG73647"/>
        <property type="gene ID" value="SAMN05444003_0698"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008324">
        <property type="term" value="F:cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006813">
        <property type="term" value="P:potassium ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004680">
        <property type="entry name" value="Cit_transptr-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006037">
        <property type="entry name" value="RCK_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036721">
        <property type="entry name" value="RCK_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03600">
        <property type="entry name" value="CitMHS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF116726">
        <property type="entry name" value="SSF116726"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51202">
        <property type="entry name" value="RCK_C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="33"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="64"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="148"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="193"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="437"/>
            <end position="454"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="460"/>
            <end position="477"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="484"/>
            <end position="502"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="522"/>
            <end position="542"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="549"/>
            <end position="575"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="603"/>
            <end position="625"/>
        </location>
    </feature>
    <feature type="domain" description="RCK C-terminal" evidence="7">
        <location>
            <begin position="236"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="domain" description="RCK C-terminal" evidence="7">
        <location>
            <begin position="325"/>
            <end position="420"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG73647.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="626" mass="67189" checksum="345328660C50963A" modified="2017-03-15" version="1">MEPITLTFEMTVVLGLLAFTVFLFVSEIVRIDFAAILVMVLLGVLSQLPGLSNLADVQHLFDGFASNAVISIIAVMIIGAGLDKTGLMSKVAAAILKFGGTTEVRIIPIISGTVGVISSFMQNVGAAALFLPVVSRISVRTEIPLSRLLMPMGFCAILGGTMTMVGSSPLILLNDLIISSNDMLPEDSQMEPFSLFSVTPVGICLVFTGILYFMLLGRWVLPNRGKDEGSSGQSVRDYLKKIYGLKSDLVEVIVPEGSILRGQTFEDIMVAHNLYILGSYHKGQRFFSPVTSTTVQDPCRLAIMGRRKVIQAIAEDYGLEVLPELDIFAEAYAPTVAGVAEVVIPPDSDLIDKTARDVVMRKTYGLGLLAIHRGGDTLSLVETEDHAVTDISNEPLRAGDTLVAFTAWDRLARLTKDRDFVVVTSDFPMEDLRPNKVAWALLFFAITLGLILFTDLRLSLALLVGACGMIASNVLRIDEAYEAVSWPTVFLLASLIPLGQAVQNTGTATWIAQEILELLDGWPIWGLQAGIAVLATGFTLVMSNVGATVLLVPLAVSIAVAAGGDPAIFALTVAISTSNSFLIPTHQVNALIMGPAGYKVVDFLKSGGIMTILFLIVSLTMMNVVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MD00</accession>
    <name>A0A1M5MD00_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Bile acid:Na+ symporter, BASS family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0762</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899421.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0762"/>
    <dbReference type="EnsemblBacteria" id="SHG75081">
        <property type="protein sequence ID" value="SHG75081"/>
        <property type="gene ID" value="SAMN05444003_0762"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002657">
        <property type="entry name" value="BilAc:Na_symport/Acr3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004710">
        <property type="entry name" value="Bilac:Na_transpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038770">
        <property type="entry name" value="Na+/solute_symporter_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10361">
        <property type="entry name" value="PTHR10361"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01758">
        <property type="entry name" value="SBF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="38"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="67"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="94"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="136"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="169"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="197"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="235"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="264"/>
            <end position="282"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG75081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="289" mass="30135" checksum="F557FA8176552F9A" modified="2017-03-15" version="1">MDSLVSVFLPLSLAMIMFTLGIGLTVADFRRVVERGKVFLVGALCQVMLIPVIAYGVIMAFGITGEIAAGIMLLSFCPGGVTTNAVSKFANGDVALSVSLTAVVSLLSIVTVPFLVAWSVGHFMGAEAPEISVTSLAIAMVLITTLPVSLGMLIRGLRPAVADRIEPKLFIVTGILFVVIILAAIAANWGLFVTNFALLGGALITLNVVAMVAGLLIAALLGFTWKERKTISIEVGIQNGTLGITLAPLIIVSAGALPTLALPSAVYSVVMYATALPFVLWLRSRHDAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5ME63</accession>
    <name>A0A1M5ME63_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Polyhydroxybutyrate depolymerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0783</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75526.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899454.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0783"/>
    <dbReference type="EnsemblBacteria" id="SHG75526">
        <property type="protein sequence ID" value="SHG75526"/>
        <property type="gene ID" value="SAMN05444003_0783"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012838694" evidence="1">
        <location>
            <begin position="21"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="domain" description="AB hydrolase-1" evidence="2">
        <location>
            <begin position="46"/>
            <end position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG75526.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="276" mass="30323" checksum="B261A36C28DB8531" modified="2017-03-15" version="1">MIRFLAALSIIPLLATQVMACSAETACSVGDRDYYIELPSSDEPNGAVIYLHGWGGSGKGALRNRRMVDGFLERGFAVIAPDGVRREGRNGRTWRFHPATGEQQNEMAFLAEVKADAVTRFDLNPDDFILGGFSIGGSMTAYAACLGPDNFAAFVPIGGNFWRPHPDRCEGPVKMLHTHGWTDTTVPLEGRVVNGVPITDPDAFAQGDIFQALQIWRETNGCVHLRADRFVTDGPFLRRAWDRCDADTALELAVFPGGHTIPNGWPDLVINWYESL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MHA5</accession>
    <name>A0A1M5MHA5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">50S ribosomal subunit assembly factor BipA</fullName>
            <ecNumber evidence="3">3.6.5.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">GTP-binding protein BipA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">bipA</name>
        <name evidence="5" type="ORF">SAMN05444003_0829</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">A 50S ribosomal subunit assembly protein with GTPase activity, required for 50S subunit assembly at low temperatures, may also play a role in translation. Binds GTP and analogs. Binds the 70S ribosome between the 30S and 50S subunits, in a similar position as ribosome-bound EF-G; it contacts a number of ribosomal proteins, both rRNAs and the A-site tRNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>GTP + H2O = GDP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:19669"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58189"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="3">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="3">Binds to ribosomes.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. BipA subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.6.5.-" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76616.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899519.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0829"/>
    <dbReference type="EnsemblBacteria" id="SHG76616">
        <property type="protein sequence ID" value="SHG76616"/>
        <property type="gene ID" value="SAMN05444003_0829"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043022">
        <property type="term" value="F:ribosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000027">
        <property type="term" value="P:ribosomal large subunit assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd03710">
        <property type="entry name" value="BipA_TypA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.250">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00849">
        <property type="entry name" value="BipA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035651">
        <property type="entry name" value="BipA_V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035647">
        <property type="entry name" value="EFG_III/V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000640">
        <property type="entry name" value="EFG_V-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004161">
        <property type="entry name" value="EFTu-like_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031157">
        <property type="entry name" value="G_TR_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042116">
        <property type="entry name" value="TypA/BipA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006298">
        <property type="entry name" value="TypA_GTP-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42908:SF8">
        <property type="entry name" value="PTHR42908:SF8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00679">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03144">
        <property type="entry name" value="GTP_EFTU_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00315">
        <property type="entry name" value="ELONGATNFCT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54980">
        <property type="entry name" value="SSF54980"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01394">
        <property type="entry name" value="TypA_BipA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00301">
        <property type="entry name" value="G_TR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 3" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="1" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0690">Ribosome biogenesis</keyword>
    <keyword evidence="3" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="3" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="Tr-type G" evidence="4">
        <location>
            <begin position="1"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="13"/>
            <end position="18"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="126"/>
            <end position="129"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG76616.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="606" mass="66300" checksum="9F49983D929239BA" modified="2017-03-15" version="1">MDIRNIAIIAHVDHGKTTLVDELLKQSGVYRDNEAITERAMDSNDIERERGITILAKCTSVEWKGTRINIVDTPGHADFGGEVERILSMVDGVVLLVDAAEGAMPQTKFVTSKALALGLRPIVVVNKVDKPDGDPDKALDEVFDLFANLDASDDQLDFPAMYASGRSGWCDSDLDGPRENLDALFDLIVDHVPAPAQIAARNEPFRMLATTLSADPFIGRILTGRVESGTLKAGDTIKALSREGDRIEQFRASKILAFRGLMQQPIAVAEAGDIVTIAGMTKATVADTLCDVSIEEPIPAQPIDPPTITVTFGINDSPLAGRDGKKVQSRVIRERLLKEAEVNVAIKIEDTPGGDAFEVSGRGELQMGVLIENMRREGFELSISRPQVIYTEENGQRMEPVEEVTIDVDDEYTGVVVEKLTGPRKGDLVEMRPGGAGKTRIVAHVPSRGLIGYHGEFLTDTRGSGVLNRIFHGSTPHKGKIEGRRQGVLISMENGTSVAFALWNLEERGKMFIGAQENVYQGMIIGEHSRENDLEVNPLKGKKLTNVRASGSDEAVRLTPPVRMSLEEAIAYIDDDELVEVTPNAVRLRKRYLDPHERKRMAKAAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MK05</accession>
    <name>A0A1M5MK05_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Two component transcriptional regulator, LuxR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0874</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77700.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899578.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0874"/>
    <dbReference type="EnsemblBacteria" id="SHG77700">
        <property type="protein sequence ID" value="SHG77700"/>
        <property type="gene ID" value="SAMN05444003_0874"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="4"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="138"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG77700.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="210" mass="22671" checksum="4A8ABBB25D3E4AD1" modified="2017-03-15" version="1">MTIRVCIVDDHPMVTEGIQAILESYDDISVVGTLTDGKEAVEQVQALAPDVMLLDLNMPGINGLNATEMILEERPETRILILSMHDSPEYISTALSHGAKGYILKDVPTEEIRTAIDTVMAGGEYLCTGAKGSLSPKIADGREPLTNREQTILLELAQGKSNKEVANSLGISVRTVETHRNNIKKKLGISSTAGLTRYAMEHGVLQGTSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MKR4</accession>
    <name>A0A1M5MKR4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acetyltransferase (GNAT) family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0883</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77898.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899594.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0883"/>
    <dbReference type="EnsemblBacteria" id="SHG77898">
        <property type="protein sequence ID" value="SHG77898"/>
        <property type="gene ID" value="SAMN05444003_0883"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="3"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG77898.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="150" mass="16412" checksum="6691873F5218AECF" modified="2017-03-15" version="1">MTSAIHLCGPEDANALLTMVAQFHEEIGIETSAEEREASVMPILEGTPLAVAYLFGPKNAPVGYLIISFGWSLELGGMDGFLDEIWIRPNVRKRGLAQEALNSVIGALKGAGLKAIHLEVNRNDGATQSLYRRLGFHMRDKYALMTRVLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MLQ9</accession>
    <name>A0A1M5MLQ9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sap, sulfolipid-1-addressing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0895</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG78175">
        <property type="protein sequence ID" value="SHG78175"/>
        <property type="gene ID" value="SAMN05444003_0895"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021315">
        <property type="entry name" value="Gap/Sap"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11139">
        <property type="entry name" value="SfLAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="38"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="73"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="106"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="136"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="160"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="201"/>
            <end position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG78175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="224" mass="23283" checksum="BC56237FE101C1E7" modified="2017-03-15" version="1">MISTLGDILPFAGGLALSPLPLVAVIVMLTGASGKRNAIAFAGGWFTGALLLSGLVILLVNGASGQTGQEPKTLSGIIKLCFGGLLLFLAWKQWGSRPEPGEAVEAPGWLVALDSSSAAKCFGFGCFLAPINVKNFPIIASAAAIIAASGLGGVQMTFTALIFAFLGTAGLLIPIVLYVMGGETAQETLQAWRKWLEKYNAIILAVLFFYLGLNAFGEGLSILF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MMR7</accession>
    <name>A0A1M5MMR7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">TRAP-type C4-dicarboxylate transport system, substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_0918</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial solute-binding protein 7 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78680.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899640.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0918"/>
    <dbReference type="EnsemblBacteria" id="SHG78680">
        <property type="protein sequence ID" value="SHG78680"/>
        <property type="gene ID" value="SAMN05444003_0918"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071702">
        <property type="term" value="P:organic substance transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018389">
        <property type="entry name" value="DctP_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038404">
        <property type="entry name" value="TRAP_DctP_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33376">
        <property type="entry name" value="PTHR33376"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03480">
        <property type="entry name" value="DctP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0574">Periplasm</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG78680.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="410" mass="45459" checksum="00B21A2E4E303796" modified="2017-03-15" version="1">MKVGDKLSGISRRDLFKIAGQYGLSSTLLAAGTFGGAMSVANLASAAESTYERRFSKEARFTLKFGAAGFNARNLLIERAGALEFARDLEARTDGEIRVEFIGDNQICGQVSCVEKTQQGIVDIYAASTQNSAGGAPYLNVLDYAYMFRNRADQYHFLYSPKSMALLREPYERRHGLKFLFSHAELRGIQLGLAWEDKETVTSVEQLFGTKNRVTGTQLGRIAMTALNLNPVPVAWEETLDGLKQGLIDGAETWASAVAYANMSPVVSQSVHLNFFCGTEHTAMSASVFDSLGGDLQDAVMESSYWAQTHVQAANEAALVKTVGQSDPQLPGTIFAENNVRNAFLSPEEIRKAEEMCSPEFQPQLWEEWRERINGWQGGADTYQEIYDEVRTIDANTLPENVEPRRWWKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MN94</accession>
    <name>A0A1M5MN94_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Dimethylsulfoniopropionate lyase DddP</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0925</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78860.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899650.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0925"/>
    <dbReference type="EnsemblBacteria" id="SHG78860">
        <property type="protein sequence ID" value="SHG78860"/>
        <property type="gene ID" value="SAMN05444003_0925"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029149">
        <property type="entry name" value="Creatin/AminoP/Spt16_NTD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036005">
        <property type="entry name" value="Creatinase/aminopeptidase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000587">
        <property type="entry name" value="Creatinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000994">
        <property type="entry name" value="Pept_M24"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01321">
        <property type="entry name" value="Creatinase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00557">
        <property type="entry name" value="Peptidase_M24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53092">
        <property type="entry name" value="SSF53092"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55920">
        <property type="entry name" value="SSF55920"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0456">Lyase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Creatinase_N" evidence="3">
        <location>
            <begin position="59"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M24" evidence="2">
        <location>
            <begin position="214"/>
            <end position="428"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG78860.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="446" mass="50106" checksum="E24B95166079A42F" modified="2017-03-15" version="1">MNQHYRDTRKIDPSRGATLADGSPNDQDRMEIGPTQLAFSEWAAAGLELPDLPTMRAFRHKRLVDRLNERDYGGVLMFDPLNIRYATDSTNMQLWNTHNPFRACLVCADGHMVLWDYKNAPFLSEFNNLVKERLSGASMFYFSVGDGIDENADAFSVQVTEIMRAHAGGNTRLAVDKIMLRGAKALEARGFELMDGEEVTEKARAIKGPDEIKAMRCASLACEDACYAMEAFARDNIPNGNVSEDDVWAVLHAENIKRGGEWIETRLLATGPRTNPWFQECGPRIIQNNEIVAFDTDLVGAYGICIDISRTWWIGDKNPRQDMIDAMNHGIEHIQTNMEMLKPGVTIPELVANGHKLDSQYQKQKYSCMMHGVGLCDEWPHVGYPDHDDSHRFDYPLEAGMTLCVEALVSPEGGDFSIKLEDQVLITEDGYENLTKYPFDPALTGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MNU5</accession>
    <name>A0A1M5MNU5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF6314 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0928</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78941.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899654.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG78941">
        <property type="protein sequence ID" value="SHG78941"/>
        <property type="gene ID" value="SAMN05444003_0928"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045632">
        <property type="entry name" value="DUF6314"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19834">
        <property type="entry name" value="DUF6314"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF6314" evidence="1">
        <location>
            <begin position="7"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF19834"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG78941.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="138" mass="15648" checksum="7AB5C230F8EBC065" modified="2017-03-15" version="1">MLQPSDFLGLWGVTRTIEDRHSNQTGRFDGEATFAQNSSGTLSYLETGQMRLGQGPSMTATRSYKWQFIDSQVNVFFEDGRPFHSFEPVGKSAGTDHPCGDDYYTVAYDFLDWPGWSAVWTVSGPRKDYTSTTKYMRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MP90</accession>
    <name>A0A1M5MP90_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Diguanylate cyclase (GGDEF) domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0913</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78573.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899631.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0913"/>
    <dbReference type="EnsemblBacteria" id="SHG78573">
        <property type="protein sequence ID" value="SHG78573"/>
        <property type="gene ID" value="SAMN05444003_0913"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01948">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001633">
        <property type="entry name" value="EAL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035919">
        <property type="entry name" value="EAL_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00563">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00052">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141868">
        <property type="entry name" value="SSF141868"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50883">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="162"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="3">
        <location>
            <begin position="234"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="domain" description="EAL" evidence="2">
        <location>
            <begin position="380"/>
            <end position="631"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG78573.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="637" mass="70725" checksum="90F97C63140ACA74" modified="2017-03-15" version="1">MSVSSVVPSRVLNLYLRLSAWLIPTFLICALIGLHVLSKHVVSDVEQRVSLRIGNLSARIAGGLERISDELQAEDALKALSAEQIMLTLMSDPAIRCAELRDPATTDALIEVPVGLGCQSSAADKDTTVPVWFDQDADLFVRWTDAEVAAARQRQRELSMMILVFGLMVALLTNYLAFRVIIGKPLNELIGRIEEAKTNAEFNAMHDSLTGVGNRRNLDEVLRDRFRRARRQDDTVTVLHIDLDGFKTINDTLGHAAGDHVLQHVSDLLEACANEKEFVGRIGGDEFVIVLENNSREGRDVEIAQKVIAQVKEPVTFDDEICRIGASIGIARSRRGDEVDQFTPERILMDSDIALYAAKRAGKGQYAIFHSDMRKDVENRKSVADDLLEAIEKRQFISYYQPQFDATGQEIRGLEALVRWQHPKHGILPPSEFIDLAEEMNLADQIDMQVLEQALADLKLTDHSGLIIPKMAVNISSTWLRSPKFLEKLRSLQIPRSRLVFEVLETVCLDELSDIQKRNITGIHEMGIELEIDDFGTGHASISGVLALQPSRLKVAREIVNAFAEEDDQKSLMEAVVALGRALGVGLIAEGVETKNHVESLSALGFESLQGYALSRPKPLETILKDYAPNSNLRNAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MWD6</accession>
    <name>A0A1M5MWD6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Paraquat-inducible protein A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1057</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81525.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1057"/>
    <dbReference type="EnsemblBacteria" id="SHG81525">
        <property type="protein sequence ID" value="SHG81525"/>
        <property type="gene ID" value="SAMN05444003_1057"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007498">
        <property type="entry name" value="PqiA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04403">
        <property type="entry name" value="PqiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="44"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="92"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="139"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="165"/>
            <end position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG81525.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="201" mass="22235" checksum="DED712F5799E76DC" modified="2017-03-15" version="1">MTTAREAGLVACRRCGQVEVISAPHCQRCGSALQSRDERSLQKVWAWLIAGMIVYIPANLYPMLITRSLGHTSDSTIFGGVVELVELGSYDIAFVVFFASVVIPIGKFIAIIYLAISVQRRSILNMHQRHKLYEVIEFIGRWSMIDVFVVAILSALVQLDSIATINPGIAAVSFALSVLFTMLAAQSFDPRLIWDASRNTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MWQ0</accession>
    <name>A0A1M5MWQ0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">NAD(P) transhydrogenase subunit alpha</fullName>
            <ecNumber evidence="9">7.1.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">SAMN05444003_1049</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 9">The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>H(+)(in) + NAD(+) + NADPH = H(+)(out) + NADH + NADP(+)</text>
            <dbReference type="Rhea" id="RHEA:47992"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="7.1.1.1"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the AlaDH/PNT family.</text>
    </comment>
    <dbReference type="EC" id="7.1.1.1" evidence="9"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81349.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899787.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1049"/>
    <dbReference type="EnsemblBacteria" id="SHG81349">
        <property type="protein sequence ID" value="SHG81349"/>
        <property type="gene ID" value="SAMN05444003_1049"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008746">
        <property type="term" value="F:NAD(P)+ transhydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1902600">
        <property type="term" value="P:proton transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007886">
        <property type="entry name" value="AlaDH/PNT_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007698">
        <property type="entry name" value="AlaDH/PNT_NAD(H)-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026255">
        <property type="entry name" value="NADP_transhyd_a"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024605">
        <property type="entry name" value="NADP_transhyd_a_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01262">
        <property type="entry name" value="AlaDh_PNT_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05222">
        <property type="entry name" value="AlaDh_PNT_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12769">
        <property type="entry name" value="PNTB_4TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000203">
        <property type="entry name" value="NADP_transhydrogenase_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01002">
        <property type="entry name" value="AlaDh_PNT_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01003">
        <property type="entry name" value="AlaDh_PNT_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00561">
        <property type="entry name" value="pntA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 9" id="KW-0520">NAD</keyword>
    <keyword evidence="4 9" id="KW-0521">NADP</keyword>
    <keyword evidence="9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 9" id="KW-1278">Translocase</keyword>
    <keyword evidence="3 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="416"/>
            <end position="433"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="439"/>
            <end position="461"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="468"/>
            <end position="487"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="493"/>
            <end position="515"/>
        </location>
    </feature>
    <feature type="domain" description="AlaDh_PNT_N" evidence="12">
        <location>
            <begin position="4"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="domain" description="AlaDh_PNT_C" evidence="11">
        <location>
            <begin position="148"/>
            <end position="316"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRNR" id="PIRNR000203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM01002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM01003"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHG81349.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="526" mass="55810" checksum="23E7B5FC1ED56115" modified="2017-03-15" version="1">MKIGSPKEIFEGEDRVAMTPASAKDLQKLGYDCVIETGAGAAAGFSDAAYKEAGVEVVKTGAALFKAADIVAKVRPPEDKEIKRLREGQTLISFFYPGQNEKLMEAANKQGATVIAMDMVPRISRAQKMDALSSMANIAGYRAVIEAGNNFGRFFTGQVTAAGKVPPAKVLVVGAGVAGLAAIGTATSLGAITYAFDVRPEVAEQVESMGAEFVFLDFEEEQQDGAATGGYASVSSPEFREAQLAKFRELAPDMDIVITTALVPGRDAPKLWLQDMIDSMKPGSVIVDLAAERGGNADGTVMDEKVVTDNGVTIVGYTDFPSRMAAQSSTLYATNIRHMMSDLTPEKDGTPNHDMEDDVIRGATATHQGEITFPPPPPKVAAIAAQPKKEVAPELTPEEKRAAEAEAFKQQTKQQVMLLGGMGALILGIGLIPGMPASFMQHFIVFVLSVFIGFQVIWNVAHSLHTPLMAVTNAISSIIILGALIQIGSTSALVTILAGLGVFMASVNIFGGFLVTRRMLAMFQKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MX23</accession>
    <name>A0A1M5MX23_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_1072</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the auxin efflux carrier (TC 2.A.69) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81831.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899808.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1072"/>
    <dbReference type="EnsemblBacteria" id="SHG81831">
        <property type="protein sequence ID" value="SHG81831"/>
        <property type="gene ID" value="SAMN05444003_1072"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1530.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004776">
        <property type="entry name" value="Mem_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038770">
        <property type="entry name" value="Na+/solute_symporter_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03547">
        <property type="entry name" value="Mem_trans"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="7"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="67"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="95"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="126"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="167"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="199"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="229"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="259"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="285"/>
            <end position="305"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG81831.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="309" mass="33748" checksum="E0DA5F81F12E3DE5" modified="2017-03-15" version="1">MNALIEVILPVFLVIGFGFFAVWRGFFSETGVDGLMVFTQKFAIPCLLFRAISTLDLEQNFDLDLMISFYVGALCGFLACFLGARYFFKRDWEDCVAIGFCGLFSNSLLLGLPITERAYGVDALTANYAIIAIHSPFCYGIGITAMEIVRNRGSSYAAMPRKVLTAMFSNALILGITLGFIVNLFSVPVPTVMWDAIDLMVRAALPAALFGLGGVLYRYRPEGDMRTILYVVAVSLVLHPAIVWVLGKSYGLSVEAFRSAILTAAMAPGINSYVFANMYGRAKRVAASSVLLGTAISIVTVWVWLTILP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MZY5</accession>
    <name>A0A1M5MZY5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Trk system potassium uptake protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">SAMN05444003_1101</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell inner membrane</location>
            <topology evidence="9">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the TrkH potassium transport family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82489.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1101"/>
    <dbReference type="EnsemblBacteria" id="SHG82489">
        <property type="protein sequence ID" value="SHG82489"/>
        <property type="gene ID" value="SAMN05444003_1101"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015379">
        <property type="term" value="F:potassium:chloride symporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003445">
        <property type="entry name" value="Cat_transpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004772">
        <property type="entry name" value="TrkH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02386">
        <property type="entry name" value="TrkH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006247">
        <property type="entry name" value="TrkH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="3 9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 9" id="KW-0406">Ion transport</keyword>
    <keyword evidence="8 9 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9 10" id="KW-0630">Potassium</keyword>
    <keyword evidence="4 9" id="KW-0633">Potassium transport</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 11" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 9" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="20"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="50"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="89"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="147"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="199"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="240"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="286"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="343"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="406"/>
            <end position="426"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="468"/>
            <end position="490"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="125"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="126"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="233"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="328"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="444"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRNR" id="PIRNR006247"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR006247-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG82489.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="495" mass="52750" checksum="EDE72042D02D6030" modified="2017-03-15" version="1">MLDSLNWQSHPYHMIDFRPVGYVVGLLVAALGVTMFAPMAADIFADNGHWIAFFQSAVVTILCGSLIALSCSNGVTGGLSLRQTFLLTAMVWLTLPVFGALPFVFGITDASATDAFFEAMSGLTTTGATAFFGLSELPEGLRLWRGMLQWLGGVGIIVVAMVFLPELRVGGMQIFRSEGFDTSGKILPRAGQIATSISYIYVGLTIACALAYAISGLSPFDAAVHAMTTVSTGGMGNYDTSFALFGPGTQYVAVLFMILAALPFVRFVQLVSGTAEPLFQDTQIRVFLLTVTVVVLLVASWLWGQDGSLTETAFRHSLFNVVSITTGTGYASADYMTWGTFPIMIIFFVGLIGGCAGSTSCSIKVFRYQLLFASIKSQIRQIHSPSGIFKPQYDGRAVSEDVLSSVMAFFIAFILSIGIFSVALGMTGLDFVTSVSGASAALANIGPGLGQEIGPAGNYAGLNDTAKWILAIGMYVGRLEILVVLTILSLKFWRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N392</accession>
    <name>A0A1M5N392_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1166</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the pirin family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84046.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899886.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1166"/>
    <dbReference type="EnsemblBacteria" id="SHG84046">
        <property type="protein sequence ID" value="SHG84046"/>
        <property type="gene ID" value="SAMN05444003_1166"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012093">
        <property type="entry name" value="Pirin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008778">
        <property type="entry name" value="Pirin_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003829">
        <property type="entry name" value="Pirin_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13903">
        <property type="entry name" value="PTHR13903"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02678">
        <property type="entry name" value="Pirin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05726">
        <property type="entry name" value="Pirin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006232">
        <property type="entry name" value="Pirin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pirin" evidence="3">
        <location>
            <begin position="21"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="Pirin_C" evidence="4">
        <location>
            <begin position="177"/>
            <end position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003457"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02678"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF05726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG84046.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="303" mass="33150" checksum="AE7C7A914F474740" modified="2017-03-15" version="1">MSIRPVTETRKAVPTMEGAGVKLHRAFGFQDPTELDPFLLFDDFRNEYPQDYQAGFPWHPHRGIETITYVLDGSVSHADSLGNTGDLNAGDVQWMTAGSGILHQEMPHGNSKGQMHGFQLWANLPASLKMTAPRYQDVESKDIPTVVDDDGTSVRVIIGEFWGKTGPVDGIAADPQYLDVSVPAGVKKTFNIDTYRRAFAYVFAGSGSFVDASKPTGVLLEKEVMGEEVNIRDMSGNRTLIRFGTGDEITVQAGDEGIRFLLISGAPIEEPVAWHGPIVMNTQDELRQAISDLNNGTFITPAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N813</accession>
    <name>A0A1M5N813_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1233</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85617.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899943.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1233"/>
    <dbReference type="EnsemblBacteria" id="SHG85617">
        <property type="protein sequence ID" value="SHG85617"/>
        <property type="gene ID" value="SAMN05444003_1233"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005235">
        <property type="entry name" value="YmdB-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36303">
        <property type="entry name" value="PTHR36303"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13277">
        <property type="entry name" value="YmdB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004789">
        <property type="entry name" value="DR1281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00282">
        <property type="entry name" value="TIGR00282"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="246"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="257"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="1">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="8"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="39"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="40"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="67"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="154"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="179"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="181"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>1</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR004789-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR004789-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG85617.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="271" mass="28991" checksum="E9BCDFF80484402C" modified="2017-03-15" version="1">MKILFLGDVVGRSGRNAVISQLPKLREEWTLDFVVVNGENATSGMGLSGSHAKALLEAGVDVLTLGDHAFDQKDMMTFIASEPRVLRPINFSKAAPGVGARVFTATNGRKILVAQVLGQVFMKRPFDDPFSALDGLLKQYPMGGQVQASLIDIHCEATSEKMAVGHFCNGRASLVVGTHTHVPTADAMILPGGTGYLTDAGMCGDYHSVIGMEKAEPLRRFITGMPKERFTPANGEATLSGVYIETDDRTGKTTRIEPVRQGGSLQSQGPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N8J9</accession>
    <name>A0A1M5N8J9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized conserved protein YjiS, DUF1127 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1242</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85807.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1242"/>
    <dbReference type="EnsemblBacteria" id="SHG85807">
        <property type="protein sequence ID" value="SHG85807"/>
        <property type="gene ID" value="SAMN05444003_1242"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009506">
        <property type="entry name" value="DUF1127"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06568">
        <property type="entry name" value="DUF1127"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="62"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG85807.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="85" mass="9900" checksum="B37D20859C6F042F" modified="2017-03-15" version="1">MQHENHITKDEPMTALNIAITSRPSASKISFFQRLFSFETLRKERFELSKLSDAQLKDIGITPDQAQKEAARPAWDLPENWSQRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NC98</accession>
    <name>A0A1M5NC98_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Pilus assembly protein CpaC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1323</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial secretin family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87160.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900019.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1323"/>
    <dbReference type="EnsemblBacteria" id="SHG87160">
        <property type="protein sequence ID" value="SHG87160"/>
        <property type="gene ID" value="SAMN05444003_1323"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009306">
        <property type="term" value="P:protein secretion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001775">
        <property type="entry name" value="GspD/PilQ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032789">
        <property type="entry name" value="T2SS-T3SS_pil_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004846">
        <property type="entry name" value="T2SS/T3SS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00263">
        <property type="entry name" value="Secretin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13629">
        <property type="entry name" value="T2SS-T3SS_pil_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00811">
        <property type="entry name" value="BCTERIALGSPD"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012997012" evidence="2">
        <location>
            <begin position="26"/>
            <end position="475"/>
        </location>
    </feature>
    <feature type="domain" description="T2SS-T3SS_pil_N" evidence="3">
        <location>
            <begin position="38"/>
            <end position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU004003"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13629"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG87160.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="475" mass="50166" checksum="86016D7278FB3EE4" modified="2017-03-15" version="1">MKYDRLIKAALAGLTLAFASAPTFAPAETLQVLRGAPSSALNVPMNRGVVVESDTPFTELTIANPTIADISSLSDRTIYVLGKEPGRTTLTLLSADGRLITNVEVHVTPDIAEFKERLQQILPGENIEVRTANNGIVLSGMVSSIARLDRAMALAERYAPDRVSNLMSVGGTQQVMLKVRFAEMQRSVSKSLSSSLAVQGTALGGDLGTSGGSNTLNNSGAVANAFGANIPASNENNGAFLFGFNAGGVEIGILLEALEARGVVRTLAEPNLTALSGQEAKFLAGGEYPVPGESDAGGITIEYKPFGVELNFIPRVVDEDVINLELIAAVSGLDPSNGINVNGLQIDAFSRRETSTTVEMRDGESFAIAGLLSDDFTDLNSQLPWVGDVPILGSLFRSAQYARRQTELVIIVTPHLVTPTRGEALALPTDRVQPPTERDLFLFGRVAADEAPQAGGAGEVARQDFSGSYGYVLDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NDF1</accession>
    <name>A0A1M5NDF1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Tol-Pal system protein TolB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">tolB</name>
        <name evidence="10" type="ORF">SAMN05444003_1343</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">The Tol-Pal system is composed of five core proteins: the inner membrane proteins TolA, TolQ and TolR, the periplasmic protein TolB and the outer membrane protein Pal. They form a network linking the inner and outer membranes and the peptidoglycan layer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 7">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the TolB family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87502.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900454.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1343"/>
    <dbReference type="EnsemblBacteria" id="SHG87502">
        <property type="protein sequence ID" value="SHG87502"/>
        <property type="gene ID" value="SAMN05444003_1343"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017038">
        <property type="term" value="P:protein import"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00671">
        <property type="entry name" value="TolB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011659">
        <property type="entry name" value="PD40"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014167">
        <property type="entry name" value="Tol-Pal_TolB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007195">
        <property type="entry name" value="TolB_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07676">
        <property type="entry name" value="PD40"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04052">
        <property type="entry name" value="TolB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02800">
        <property type="entry name" value="propeller_TolB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="3 7" id="KW-0132">Cell division</keyword>
    <keyword evidence="5 7" id="KW-0574">Periplasm</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013407131" description="Tol-Pal system protein TolB" evidence="7">
        <location>
            <begin position="21"/>
            <end position="439"/>
        </location>
    </feature>
    <feature type="domain" description="TolB_N" evidence="9">
        <location>
            <begin position="25"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="420"/>
            <end position="439"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009820"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF04052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG87502.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="439" mass="47465" checksum="201800056F701852" modified="2017-03-15" version="1" precursor="true">MLKQVLSILIICLFAGTAVAQDGPLRLRITDGVIEPLPFALPAFQAETPGSEGVANDIARLVAQDLINTGLFREIPNAAFISTPSSFSAPISYPDWRAINAQALINGAVAVNGDQLIVKFRLYDVFSGQELGSGLQLAGTVQGWRRVAHKVADAVYSRITGEGGYFDSRVVYVAESGPKDNRQKRIAIMDYDGSNVQYLTDSAALVLAPRFSPTGDRVLYTSYESGFPRINVLDVANVGRRALTTAPGEMSFSPRFSRDGSKVIYSLINGGNTDLYMTDLGSGQHIRLTSAPSIETAPSFSPDGSQIVFESDRSGTQQLYIMSASGGDARRISFGQGRYGSPVWSPRGDQIAFTNQENGRFHIGVMRTDGSEERLLSTSFLDESPTWSPNGRVIMFMRETQGVDGTASLYSIDIAGRTQPRQVQLPSAASDPSWGPLQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NGJ4</accession>
    <name>A0A1M5NGJ4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized conserved protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1376</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88093.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1376"/>
    <dbReference type="EnsemblBacteria" id="SHG88093">
        <property type="protein sequence ID" value="SHG88093"/>
        <property type="gene ID" value="SAMN05444003_1376"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009683">
        <property type="entry name" value="Extensin-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009045">
        <property type="entry name" value="Hedgehog_sig/DD-Pept_Zn-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06904">
        <property type="entry name" value="Extensin-like_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55166">
        <property type="entry name" value="SSF55166"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5011979661" evidence="1">
        <location>
            <begin position="20"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="domain" description="Extensin-like_C" evidence="2">
        <location>
            <begin position="149"/>
            <end position="303"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF06904"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG88093.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="303" mass="33129" checksum="EBB8DFE2D2D212B3" modified="2017-03-15" version="1">MKRVGAYVLAICAATLALAEAPEQSPRPTSRVIATNAPPEVTLDIVRPALRPDSVAAYAPQIALPDVQDRPRLRPYLRPDLERGAETRPQRRAEQNLFAFSPYAISSSLVPTLRPPAIPQRFEQQRQARLRGQVCGDPDIQGTDVGRVEGRGRCGIDSAVRIKSVAGVRLSTQALMDCTTARALKRWIETGARPAVANIGGGIRSLRVVAHYACRFRNSASSGRLSEHSFGHAIDIAGIGLQNGDEITLLTDWGGGEKGRALRQMWRAACGPFGTVLGPESNRFHRDHFHFDTARYRSGSFCR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NJ02</accession>
    <name>A0A1M5NJ02_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Nucleoside-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1444</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the BMP lipoprotein family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89447.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900128.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1444"/>
    <dbReference type="EnsemblBacteria" id="SHG89447">
        <property type="protein sequence ID" value="SHG89447"/>
        <property type="gene ID" value="SAMN05444003_1444"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003760">
        <property type="entry name" value="PnrA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02608">
        <property type="entry name" value="Bmp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013019646" evidence="3">
        <location>
            <begin position="24"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="domain" description="Bmp" evidence="4">
        <location>
            <begin position="27"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008610"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02608"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG89447.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="331" mass="34399" checksum="16F279B273DF3E89" modified="2017-03-15" version="1">MTFMKKMMSATAALALTAGAAAADPAIVFDLGGKFDKSFNESAFNGAMRWAEETGGSFAEVELQSDAQREQALRRFAESGANPIVMAGFAFATALNEVAADYPDTKFVIIDMVVDQPNVRSVVFNEHEGSYLVGMLAAMASESGTVSFVGGMDIPLIRKFACGYAQGVKAVNADATIVANMTGTTPAAWNDPVKGSELTLAQISQGSDVVFAAAGGTGVGVLQTAADNNILSIGVDANQNYLHPGQVLTSMLKRVDNAVYEAFSAGVDVETGFNAMGVANEGVGYALDEFNAELVTAEMAEMVDAAAASIAAGELAVHDYSSDETCPALEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NKP8</accession>
    <name>A0A1M5NKP8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Malate dehydrogenase</fullName>
            <ecNumber evidence="2">1.1.1.37</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">mdh</name>
        <name evidence="8" type="ORF">SAMN05444003_1476</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the reversible oxidation of malate to oxaloacetate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>(S)-malate + NAD(+) = H(+) + NADH + oxaloacetate</text>
            <dbReference type="Rhea" id="RHEA:21432"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15589"/>
            <dbReference type="ChEBI" id="CHEBI:16452"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.1.1.37"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the LDH/MDH superfamily. MDH type 3 family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.37" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900155.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1476"/>
    <dbReference type="EnsemblBacteria" id="SHG90156">
        <property type="protein sequence ID" value="SHG90156"/>
        <property type="gene ID" value="SAMN05444003_1476"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030060">
        <property type="term" value="F:L-malate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019752">
        <property type="term" value="P:carboxylic acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01339">
        <property type="entry name" value="LDH-like_MDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00487">
        <property type="entry name" value="Malate_dehydrog_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001557">
        <property type="entry name" value="L-lactate/malate_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022383">
        <property type="entry name" value="Lactate/malate_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001236">
        <property type="entry name" value="Lactate/malate_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015955">
        <property type="entry name" value="Lactate_DH/Glyco_Ohase_4_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011275">
        <property type="entry name" value="Malate_DH_type3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02866">
        <property type="entry name" value="Ldh_1_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00056">
        <property type="entry name" value="Ldh_1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000102">
        <property type="entry name" value="Lac_mal_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00086">
        <property type="entry name" value="LLDHDRGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56327">
        <property type="entry name" value="SSF56327"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01763">
        <property type="entry name" value="MalateDH_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0520">NAD</keyword>
    <keyword evidence="2 5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="domain" description="Ldh_1_N" evidence="6">
        <location>
            <begin position="5"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="domain" description="Ldh_1_C" evidence="7">
        <location>
            <begin position="150"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2 3">
        <location>
            <position position="178"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="10"/>
            <end position="15"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="34"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="85"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2 4">
        <location>
            <position position="91"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="98"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="121"/>
            <end position="123"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2 4">
        <location>
            <position position="123"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2 4">
        <location>
            <position position="154"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00487"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000102-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000102-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02866"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG90156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="322" mass="33681" checksum="2B6E1EF01286A508" modified="2017-03-15" version="1">MARPKIALIGAGQIGGTLAHLAAIKELGDVVLFDIAEEGDIARGKGLDIAEAGPVAGIDVALKGTNDYADIAGADVCIVTAGVARKPGMSRDDLLGINLKVMKSVGEGIAAHAPDTFVICITNPLDAMVWALREFSGLPHNMVCGMAGVLDSARFRHFLAEEFDVSMRDVTAFVLGGHGDTMVPLARYSTVAGIPLPDLVEMGWTTQEKLDAIIQRTRDGGAEIVGLLKTGSAFYAPATSGIEMAEAYLKDQKRLLPCAAHVDGAYGLNGTYVGVPTIIGAGGIERVVEIKMNKEEQAMFDKSVDAVKGLVDACRGIDSSLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NL15</accession>
    <name>A0A1M5NL15_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Probable membrane transporter protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_1475</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the 4-toluene sulfonate uptake permease (TSUP) (TC 2.A.102) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90135.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900467.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG90135">
        <property type="protein sequence ID" value="SHG90135"/>
        <property type="gene ID" value="SAMN05444003_1475"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002781">
        <property type="entry name" value="TM_pro_TauE-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01925">
        <property type="entry name" value="TauE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="30"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="70"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="96"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="164"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="198"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="224"/>
            <end position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363041"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG90135.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="248" mass="27055" checksum="BDBF05C461BEACA7" modified="2017-03-15" version="1">MEGSVFWITAVLAAIFVGLGKGGVPVITAMAVPVLSLVISPVVAAGLLLPVFIASDVFGVYLYRKHFDRRVLTIMCAVMPIGVFIGWATVDLISEAMVTILLGLIGTVFALAMLLERQEERPRREAKIGPGIFWGTITGFTSFVSHSGATPYQVYTLPLRMPKLVFAGTVTIAFAYINLVKLIPYWALGQLNVENLQIALILMVPAILAVFAGVALVRWIPTKLFFRIVVWALLLISLKLIWDGVGRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NMQ7</accession>
    <name>A0A1M5NMQ7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Ribose 1,5-bisphosphate phosphokinase PhnN</fullName>
            <ecNumber evidence="3">2.7.4.23</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Ribose 1,5-bisphosphokinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">phnN</name>
        <name evidence="5" type="ORF">SAMN05444003_1507</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 3">
            <text>alpha-D-ribose 1,5-bisphosphate + ATP = 5-phospho-alpha-D-ribose 1-diphosphate + ADP</text>
            <dbReference type="Rhea" id="RHEA:20109"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="ChEBI" id="CHEBI:68688"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.23"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 3">Metabolic intermediate biosynthesis; 5-phospho-alpha-D-ribose 1-diphosphate biosynthesis; 5-phospho-alpha-D-ribose 1-diphosphate from D-ribose 5-phosphate (route II): step 3/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the ribose 1,5-bisphosphokinase family.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.23" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90874.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900181.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1507"/>
    <dbReference type="EnsemblBacteria" id="SHG90874">
        <property type="protein sequence ID" value="SHG90874"/>
        <property type="gene ID" value="SAMN05444003_1507"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00087">
        <property type="reaction ID" value="UER00175"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033863">
        <property type="term" value="F:ribose 1,5-bisphosphate phosphokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006015">
        <property type="term" value="P:5-phosphoribose 1-diphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019634">
        <property type="term" value="P:organic phosphonate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00836">
        <property type="entry name" value="PhnN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008145">
        <property type="entry name" value="GK/Ca_channel_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008144">
        <property type="entry name" value="Guanylate_kin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012699">
        <property type="entry name" value="PhnN"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00625">
        <property type="entry name" value="Guanylate_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00072">
        <property type="entry name" value="GuKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02322">
        <property type="entry name" value="phosphon_PhnN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50052">
        <property type="entry name" value="GUANYLATE_KINASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Guanylate kinase-like" evidence="4">
        <location>
            <begin position="3"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="10"/>
            <end position="17"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000373"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00836"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG90874.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="180" mass="19275" checksum="3080B911AD9E9FC5" modified="2017-03-15" version="1">MTGRVIAVVGPSGVGKDSVMSGLKSLMPDLHVVRRVITREPGLGGEDYDAVSPEEFDTMVQSGAFALHWGGHSLRYGIPITVKYQLTKGTDCLVNFSRKALSEGASIFPNFLVLNITASPETLAKRLTARGRESEEEIAQRISVAQKCLPDGLDTVEVSNDGPLNQTVARAAALIQPVRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NMW4</accession>
    <name>A0A1M5NMW4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative phosphonate metabolism protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1506</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90850.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900180.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1506"/>
    <dbReference type="EnsemblBacteria" id="SHG90850">
        <property type="protein sequence ID" value="SHG90850"/>
        <property type="gene ID" value="SAMN05444003_1506"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009389">
        <property type="entry name" value="DUF1045"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06299">
        <property type="entry name" value="DUF1045"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF033328">
        <property type="entry name" value="Phest_Mll4975"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG90850.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="223" mass="24500" checksum="F9D5A87F777C428F" modified="2017-03-15" version="1">MSYSRFPIYFIPPEGPLADFGAAWLGWNVVTGRVAAQPEVSGLRDITMTPMKYGFHGTLKPPFRLADGMSVEALETAVGELAASLKPAACDRLALTTLGGFLALTPQGDATGLRRIADACVRDLDRFRAPAPDAELARRRQAGLTDRQEALLTQWGYPYVMEEFRFHLTLSGRLPTADIAHWSAVVEQHLPPITTPFPIDQIALCGERSDGRFELIQRYALTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NPW4</accession>
    <name>A0A1M5NPW4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Putrescine-binding periplasmic protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1536</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Required for the activity of the bacterial periplasmic transport system of putrescine.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 4">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial solute-binding protein 1 family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the bacterial solute-binding protein PotD/PotF family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91560.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900470.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1536"/>
    <dbReference type="EnsemblBacteria" id="SHG91560">
        <property type="protein sequence ID" value="SHG91560"/>
        <property type="gene ID" value="SAMN05444003_1536"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019808">
        <property type="term" value="F:polyamine binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015846">
        <property type="term" value="P:polyamine transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006059">
        <property type="entry name" value="SBP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001188">
        <property type="entry name" value="Sperm_putr-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13416">
        <property type="entry name" value="SBP_bac_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF019574">
        <property type="entry name" value="Periplasmic_polyamine_BP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00909">
        <property type="entry name" value="SPERMDNBNDNG"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0574">Periplasm</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013336539" description="Putrescine-binding periplasmic protein" evidence="6">
        <location>
            <begin position="27"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="38"/>
        </location>
        <ligand>
            <name>spermidine</name>
            <dbReference type="ChEBI" id="CHEBI:57834"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR019574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR019574-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG91560.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="370" mass="40541" checksum="F1564ABB07B9C664" modified="2017-03-15" version="1">MKTLKTSSSALLAAILSIASAQSATAQDRVLKVTNWGEYIGEDTIANFEAEYGIEVIYDVYDSAESIDAKLLAGNSGYDVVVHASGDAARLIKAGNILAPLDFSKLDNLRHIDPAIMEQLAAEWDPGNVHMLPYMWGSHGVTYNNELVLETYPDAPVGSLDLIFDPVHMAELSKCGVSFLDSPGDIIPMALSYLGFDPNSTNPEDYEKVGAMLAEIRPYVKTFDNYAYQRMPQREFCVATTWGPDGLLAMSGAAEANTGVVLDFFLPPGESAAQLWVDSWMIPADAENVEDAHLFLNYMMRPEVAAGDTNFVWYATANIDAKPLIDEEVISSPAAFPTSDQVELMYTTVVLPPRVERLQTRTWTNFKAGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NPZ4</accession>
    <name>A0A1M5NPZ4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Dimethylamine/trimethylamine dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1539</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">In the N-terminal section; belongs to the NADH:flavin oxidoreductase/NADH oxidase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91626.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1539"/>
    <dbReference type="EnsemblBacteria" id="SHG91626">
        <property type="protein sequence ID" value="SHG91626"/>
        <property type="gene ID" value="SAMN05444003_1539"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02929">
        <property type="entry name" value="TMADH_HD_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001155">
        <property type="entry name" value="OxRdtase_FMN_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037348">
        <property type="entry name" value="TMADH/HD_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00724">
        <property type="entry name" value="Oxidored_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Oxidored_FMN" evidence="2">
        <location>
            <begin position="10"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="domain" description="Pyr_redox_2" evidence="3">
        <location>
            <begin position="388"/>
            <end position="623"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG91626.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="850" mass="94568" checksum="C2F152477998593E" modified="2017-03-15" version="1">MTRDPRYDILFEPMKIGPVTAKNRFYQVPHCTGMGYLRPRMLADMRATKAEGGWGVICTEYNSIHPTSDDLKHVSASLWDDSDIRAHKLMTDKVHEHGALAGAELWYGGGRSGNMMTREVALELDSVPNAVGHPFQTRAMDKEDIRNLRRWHRKAALRARDAGFDVVYVYATHTYLLANFLSPTANTRIDEYGGSLTNRVRLVRELIEETKDAVGDRCGVAVRFAADEEIGEDGVPIHGERRDMFAMLADLPDLWDINIANYTVEMGVSRFTKEAALEPYMDFVKSQTDKPVVTVGRFTSPDTMVSQIRRGITDFIGAARPSIADPFLPRKVEEGQFEDIRECIGCNICYAGDSIGVPIRCTQNPTMGEEWRKGWHPERFSPTQMPSKVLIVGAGPAGLEAAHVLGKRGYQVTLADARRELGGRLPREAALPGMSEYIRVRDYRAQQFHKLPNVEVFLESPLTANDVFEFEADHVVIATGASWRKDRFDGDRYIPIAVPDGINLLTADDIMEGNLPDGPTLVYDEDGYYLGGVIAERLKAAGQDVTLATPSEVVSEWASNTSERWKVRTHLMKLGVGIELSQTLTAFDGETATFECTFTGEKKSLKVANVVMVTQRAPNDRLYHDVLAKEGGDAKALPFTLAKIGDCDAPAIVAGATYAGHRYGQELDRPVDIDVPLKHDRIDVGDIHTSDPKEKLVEGYLDTVLHYYEEEIEGETFFAALADHLTAPEHKAKMAMLAEIEGYTAKAMQPLLEKYALKPRATDMLHANGRRQAEDLPRDWPGLINHMREIFPAYITAFERLEAMAPPEDLPALRIATAHEIAAVSFLEREAEGDPDSTAPLREFLMTGTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NS93</accession>
    <name>A0A1M5NS93_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1567</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG92338.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900236.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG92338">
        <property type="protein sequence ID" value="SHG92338"/>
        <property type="gene ID" value="SAMN05444003_1567"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002816">
        <property type="entry name" value="TraB/PrgY/GumN_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01963">
        <property type="entry name" value="TraB_PrgY_gumN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012793460" evidence="1">
        <location>
            <begin position="18"/>
            <end position="327"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG92338.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="327" mass="35924" checksum="0B17BFDDFE1C7D7F" modified="2017-03-15" version="1">MRILLTLFFCLWSPSLAALCTGSSFMDRITEAERAQIAEAVAATPYATGLHWTATKDDKTLHLIGTMHIADPRLQSVFDRTATSVDASELLLVEATAESEAEMQAAFAANPDMIFITEGPTLPELLDEETWQTLSEAVSARMVPPFLAAKMRPWYLSLTLAIPPCVIPELTAGERGLDHMLMTYADEIGVPVEAIEDPIEVMQALSGGTFEEQLDALRLSLLTPELQTEMFVAMLNSYFSEEIAEVWEASRLAVNYVSELSPETAEALFEEVEVALLKERNLNWIPVVEAAFEDNTTVTLAVGAAHLPGEFGVLTLLEDKGWAISRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NXN8</accession>
    <name>A0A1M5NXN8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator, RpiR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1653</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG94336.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900311.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1653"/>
    <dbReference type="EnsemblBacteria" id="SHG94336">
        <property type="protein sequence ID" value="SHG94336"/>
        <property type="gene ID" value="SAMN05444003_1653"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901135">
        <property type="term" value="P:carbohydrate derivative metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05013">
        <property type="entry name" value="SIS_RpiR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000281">
        <property type="entry name" value="HTH_RpiR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035472">
        <property type="entry name" value="RpiR-like_SIS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001347">
        <property type="entry name" value="SIS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01380">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SSF53697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51071">
        <property type="entry name" value="HTH_RPIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="241"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="domain" description="HTH rpiR-type" evidence="3">
        <location>
            <begin position="3"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="62"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51071"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG94336.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="287" mass="31029" checksum="F7C3866A3EB20275" modified="2017-03-15" version="1">MSATFDDRLSVSYSDLSATLQQAADFVRANPVDLATRTLRSVSRESGISPAAFSRLARALGYSDLEELREEVRKNIDNRVNNFAARAAKLQSEHRSGGSDFVDAHFEACQSNLHELVSTLDRAVLDVAIAQIEKARRVVLLGALGSTGVVEYLSYIASFCADNWTMASRMGSSLGGGIAGLGNTDVMIIVTKPPFAERSIAAAKLAQQQGVYVVLITDTLTCPALKHASARFIVPTQSPHFYSSYVVTLFLVECLIGVLVGRSGSSARRRIAEVEEANKVLAEVWDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NY11</accession>
    <name>A0A1M5NY11_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1654</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG94357.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900312.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1654"/>
    <dbReference type="EnsemblBacteria" id="SHG94357">
        <property type="protein sequence ID" value="SHG94357"/>
        <property type="gene ID" value="SAMN05444003_1654"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011852">
        <property type="entry name" value="TRAP_TAXI"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42941">
        <property type="entry name" value="PTHR42941"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16868">
        <property type="entry name" value="NMT1_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02122">
        <property type="entry name" value="TRAP_TAXI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013359342" evidence="1">
        <location>
            <begin position="25"/>
            <end position="322"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG94357.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="322" mass="34300" checksum="EC873B0D09B80629" modified="2017-03-15" version="1">MFAKLKITAAAAVTTAMMVPAAYAEEFVTIGTGGVTGVYYPTGGAICRLVNKGRRDHGVRCSVESTGGSVYNINTIREGELEFGVAQSDWQYHAYNGSSRFEEAGPFEDLRAVFSVHPEPFTVVARADAGISSIEDLAGKRVNIGNPGSGQRGTMEVLMEALGWTTDDFALATELKAAEQSAALCDNQIDAMVYTVGHPSGSIQEATTACDSVLVEVSGSAVDGLVEDNSFYRTATIPGGMYRGNDSDTMTFGVGATFVTSANVSDDVVYTLVSSVFENFEDFTGLHPAFANLKPEEMVADGLSAPLHPGAERYYREKGWIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PK53</accession>
    <name>A0A1M5PK53_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5 7">Integration host factor subunit beta</fullName>
            <shortName evidence="5">IHF-beta</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">ihfB</name>
        <name evidence="5" type="synonym">himD</name>
        <name evidence="8" type="ORF">SAMN05444003_1687</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 7">This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2 5 7">Heterodimer of an alpha and a beta chain.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the bacterial histone-like protein family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02087.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1687"/>
    <dbReference type="EnsemblBacteria" id="SHH02087">
        <property type="protein sequence ID" value="SHH02087"/>
        <property type="gene ID" value="SAMN05444003_1687"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030527">
        <property type="term" value="F:structural constituent of chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006417">
        <property type="term" value="P:regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.520.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00381">
        <property type="entry name" value="IHF_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000119">
        <property type="entry name" value="Hist_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020816">
        <property type="entry name" value="Histone-like_DNA-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010992">
        <property type="entry name" value="IHF-like_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005685">
        <property type="entry name" value="IHF_beta"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33175">
        <property type="entry name" value="PTHR33175"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00216">
        <property type="entry name" value="Bac_DNA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01727">
        <property type="entry name" value="DNABINDINGHU"/>
    </dbReference>
    <dbReference type="SMART" id="SM00411">
        <property type="entry name" value="BHL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47729">
        <property type="entry name" value="SSF47729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00988">
        <property type="entry name" value="hip"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00045">
        <property type="entry name" value="HISTONE_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="4 5 7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0804">Transcription</keyword>
    <keyword evidence="5 7" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="5 7" id="KW-0810">Translation regulation</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011870"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00018700"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00381"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003939"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH02087.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="120" mass="13618" checksum="C3DFD7041C89E021" modified="2017-03-15" version="1">MKIFGYSLYESSSAGWKKTYSPLGGYHMIRSELIQKLADENPHLYQRDVERIVNTVFDEITGAMAKGHRVELRGFGAFSVKKRDARVGRNPRTGESVSVEEKHVPFFKTGKLLRDRLNGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PLD9</accession>
    <name>A0A1M5PLD9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">3-oxoacyl-[acyl-carrier-protein] synthase I</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1711</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02567.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900527.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1711"/>
    <dbReference type="EnsemblBacteria" id="SHH02567">
        <property type="protein sequence ID" value="SHH02567"/>
        <property type="gene ID" value="SAMN05444003_1711"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004315">
        <property type="term" value="F:3-oxoacyl-[acyl-carrier-protein] synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00834">
        <property type="entry name" value="KAS_I_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000794">
        <property type="entry name" value="Beta-ketoacyl_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018201">
        <property type="entry name" value="Ketoacyl_synth_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014031">
        <property type="entry name" value="Ketoacyl_synth_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014030">
        <property type="entry name" value="Ketoacyl_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020841">
        <property type="entry name" value="PKS_Beta-ketoAc_synthase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11712">
        <property type="entry name" value="PTHR11712"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00109">
        <property type="entry name" value="ketoacyl-synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02801">
        <property type="entry name" value="Ketoacyl-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00825">
        <property type="entry name" value="PKS_KS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00606">
        <property type="entry name" value="B_KETOACYL_SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PKS_KS" evidence="3">
        <location>
            <begin position="4"/>
            <end position="409"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH02567.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="409" mass="42312" checksum="BDA2C1ACBA0D3951" modified="2017-03-15" version="1">MRRVVVTGLGIVSPIGNNADEVLASLKTGKSGIEASPEMAEHGFRSQIAGTLKLDVSEHVDKRTLRFMGPGAAYSYIAMQQAIEDAGLEEDQVVNPMTGVIAGSGGPSTSAMLAAHQVVLNSGATKRIGPFAVPKTMSSTVSANLATAFKIKGMNMSITSACSTSLHCIGMAAQQIALGEQDTMFAGGGEELDWTLSCLFDAMGAMSSKYNDTPERASRAFDADRDGFVIAGGGAMVVLESLESAQARGAKIYAEVTGFSATSDGADMVAPSGEGGERAMRGALKSLPEGRKVSYINAHGTSTPVGDVGEIEAVRRVFGEGSTPPVSSTKSMTGHSQGATGASEAVYCLLMLEHDFIAPSINVETLDPALKPEEIATEVVENAGLDTIMTNSFGFGGTNGSMLLSKFEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PMY1</accession>
    <name>A0A1M5PMY1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Probable membrane transporter protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_1740</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the 4-toluene sulfonate uptake permease (TSUP) (TC 2.A.102) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03128.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900550.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1740"/>
    <dbReference type="EnsemblBacteria" id="SHH03128">
        <property type="protein sequence ID" value="SHH03128"/>
        <property type="gene ID" value="SAMN05444003_1740"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002781">
        <property type="entry name" value="TM_pro_TauE-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01925">
        <property type="entry name" value="TauE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="15"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="39"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="80"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="110"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="142"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="176"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="202"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="231"/>
            <end position="252"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363041"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH03128.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="253" mass="27004" checksum="C1E65F46223CA17E" modified="2017-03-15" version="1">MNWFYDMAGLTEQEFWILAGIVVAAGIVRGFSGFALSALIMASAIIILPPVELIPMLWWLEMSASLMMMKGGWADADRKTAYGLVIGGALGWPFGLWLTTSLDVDTSKAIALTIIVVLAALQLTKIRLPFLATTPGLYGSGVVSGIVSGLASVGGMIVALYVLASDASARSMRGTLVLYLFLSSIMSMVIMLSFGVMTTTSITRGLIFALPTMFGVFLGQQLFVERFAAYYRPFCLVLLCSLAGAGLVRTVLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PQ42</accession>
    <name>A0A1M5PQ42_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1780</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the 5'-nucleotidase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03937.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1780"/>
    <dbReference type="EnsemblBacteria" id="SHH03937">
        <property type="protein sequence ID" value="SHH03937"/>
        <property type="gene ID" value="SAMN05444003_1780"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009166">
        <property type="term" value="P:nucleotide catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.780.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008334">
        <property type="entry name" value="5'-Nucleotdase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036907">
        <property type="entry name" value="5'-Nucleotdase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006179">
        <property type="entry name" value="5_nucleotidase/apyrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004843">
        <property type="entry name" value="Calcineurin-like_PHP_ApaH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11575">
        <property type="entry name" value="PTHR11575"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02872">
        <property type="entry name" value="5_nucleotid_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00149">
        <property type="entry name" value="Metallophos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01607">
        <property type="entry name" value="APYRASEFAMLY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55816">
        <property type="entry name" value="SSF55816"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Metallophos" evidence="3">
        <location>
            <begin position="7"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="domain" description="5_nucleotid_C" evidence="4">
        <location>
            <begin position="375"/>
            <end position="494"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006654"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362119"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02872"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH03937.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="583" mass="64462" checksum="372D2E95933092BA" modified="2017-03-15" version="1">MRNLNLKLICTTDLHMELFGYDYLMDKPNPDRGLLKLASTIMAHRIGKNSLLFDNGDFLQGTPLADEIAPSSQHLLAEAFNELGYDAITLGNHDFDYGLDVLEGFLHQLDAPVVGSNISGTPDSVKSHLVMNRTFRCEDGSRAEIRIGVIGLLPPQTTVWNAHCLKKRVVIEDIVEAAKRAAENAREDGADIVIALAHAGLDQSAPHHLMENALVPLSHLKCLDAIFGGHTHEWFETHSNHVSSRLGSVPVVQSGSNACGFGVIDPTLSEHPTWSVVSFETQLERPKSDTPNPKLFGYILDAHQRVREKLAKPVGASSRPLSNHFSMIGFDDGIKLVHEALLEHATHITDELGLPTTACYTSFSSDGAFGSKKFLNTEGRIIRERDLSSIVPFNNPICVIGTTTERLRKWISESSIFLNEIAPRQNSQALLSGKSPSYFFDQFSSISYQIDLSQSVNDHRRRIPRLAWNGEELENGQSLAVIASTYRAYGGGGFVYTNPDQTIWESTQGARDIVAKYLENIGTFNPCDAPLWTFAPVPETQLTFELPRSYRVKPAINGLSQVSDDDTTIRYQLDLRELAPTGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PQM0</accession>
    <name>A0A1M5PQM0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Porphobilinogen deaminase</fullName>
            <shortName evidence="8">PBG</shortName>
            <ecNumber evidence="8">2.5.1.61</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Hydroxymethylbilane synthase</fullName>
            <shortName evidence="8">HMBS</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Pre-uroporphyrinogen synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">hemC</name>
        <name evidence="11" type="ORF">SAMN05444003_1763</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 8">Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>H2O + 4 porphobilinogen = hydroxymethylbilane + 4 NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:13185"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:57845"/>
            <dbReference type="ChEBI" id="CHEBI:58126"/>
            <dbReference type="EC" id="2.5.1.61"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>dipyrromethane</name>
            <dbReference type="ChEBI" id="CHEBI:60342"/>
        </cofactor>
        <text evidence="8">Binds 1 dipyrromethane group covalently.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3">Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; coproporphyrinogen-III from 5-aminolevulinate: step 2/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5 8">Monomer.</text>
    </comment>
    <comment type="miscellaneous">
        <text evidence="8">The porphobilinogen subunits are added to the dipyrromethane group.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 8">Belongs to the HMBS family.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.61" evidence="8"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03603.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900568.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1763"/>
    <dbReference type="EnsemblBacteria" id="SHH03603">
        <property type="protein sequence ID" value="SHH03603"/>
        <property type="gene ID" value="SAMN05444003_1763"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00251">
        <property type="reaction ID" value="UER00319"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004418">
        <property type="term" value="F:hydroxymethylbilane synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018160">
        <property type="term" value="P:peptidyl-pyrromethane cofactor linkage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006782">
        <property type="term" value="P:protoporphyrinogen IX biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00260">
        <property type="entry name" value="Porphobil_deam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000860">
        <property type="entry name" value="HemC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022419">
        <property type="entry name" value="Porphobilin_deaminase_cofac_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022417">
        <property type="entry name" value="Porphobilin_deaminase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022418">
        <property type="entry name" value="Porphobilinogen_deaminase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036803">
        <property type="entry name" value="Porphobilinogen_deaminase_C_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11557">
        <property type="entry name" value="PTHR11557"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01379">
        <property type="entry name" value="Porphobil_deam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03900">
        <property type="entry name" value="Porphobil_deamC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001438">
        <property type="entry name" value="4pyrrol_synth_OHMeBilane_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00151">
        <property type="entry name" value="PORPHBDMNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54782">
        <property type="entry name" value="SSF54782"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00212">
        <property type="entry name" value="hemC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00533">
        <property type="entry name" value="PORPHOBILINOGEN_DEAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Porphobil_deam" evidence="9">
        <location>
            <begin position="13"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="domain" description="Porphobil_deamC" evidence="10">
        <location>
            <begin position="237"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="modified residue" description="S-(dipyrrolylmethanemethyl)cysteine" evidence="8">
        <location>
            <position position="250"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002869"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004735"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005638"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00260"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF03900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH03603.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="315" mass="34104" checksum="B36ECAF40A941607" modified="2017-03-15" version="1">MTLHLPTPDETFKIGTRGSPLALAQAHETRSRLMAAFDLPEDAFEICVIKVMGDAIQDRALREIGGKGLFTREIEEALLDGSIDIAVHSMKDMPVEQPKGLVLETYLPREDVRDAFISFDAKGLADLEEGATVGSSSLRRKAQLLARRPDLKVVEFRGNVQTRLKKLNEGVATATFLAMAGLNRLGMDDVPKTPIEPEDILPAVAQGAIGIERRSLDGRAAEMLDAIHDGPTGQRLASERAFLAALDGSCETPIAGLAEIQGSDLRLRGEILREDGSEVLTDEATAPIEDGAEIGREMAKRLLSRAGPGFFSHRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PXU6</accession>
    <name>A0A1M5PXU6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycerophosphoryl diester phosphodiesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1917</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06628.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900698.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1917"/>
    <dbReference type="EnsemblBacteria" id="SHH06628">
        <property type="protein sequence ID" value="SHH06628"/>
        <property type="gene ID" value="SAMN05444003_1917"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008081">
        <property type="term" value="F:phosphoric diester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030395">
        <property type="entry name" value="GP_PDE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017946">
        <property type="entry name" value="PLC-like_Pdiesterase_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03009">
        <property type="entry name" value="GDPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51695">
        <property type="entry name" value="SSF51695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51704">
        <property type="entry name" value="GP_PDE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GP-PDE" evidence="1">
        <location>
            <begin position="9"/>
            <end position="250"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH06628.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="250" mass="27609" checksum="633D5610530EA65C" modified="2017-03-15" version="1">MKLPQSFLDRPIAHRGLHDTTAGRAENSLKAFEAAIEAGYGIELDLQPSKDGVAMVFHDYFMNRLTAKRGPIALRSAESLGRTELLHDGDTIPTFEEVLDLVAGRVPLLIEFKDQDGGMGKRVGSLEKAAAEVLADYDGDVALMSFNPHSVAKCQELMPDTPRGLVTAVFDSKGWPLILPKRRKELRAIPDYERVGACFISHEAEDLDNPRIQELRADGATILCWTIKSAEQEAEARHVVHNVTFEGYLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PYQ9</accession>
    <name>A0A1M5PYQ9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Membrane fusion protein (MFP) family protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_1915</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell inner membrane</location>
            <topology evidence="8">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 8">Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06599.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900697.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1915"/>
    <dbReference type="EnsemblBacteria" id="SHH06599">
        <property type="protein sequence ID" value="SHH06599"/>
        <property type="gene ID" value="SAMN05444003_1915"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039562">
        <property type="entry name" value="MFP_biotin_lipoyl_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010129">
        <property type="entry name" value="T1SS_HlyD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13533">
        <property type="entry name" value="Biotin_lipoyl_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01843">
        <property type="entry name" value="type_I_hlyD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="3 8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 8" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Biotin_lipoyl_2" evidence="10">
        <location>
            <begin position="60"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="9">
        <location>
            <begin position="148"/>
            <end position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU365093"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF13533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH06599.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="432" mass="48056" checksum="DD1421E8D8274636" modified="2017-03-15" version="1">MTEPANRWSAKRPLILGLIALFVLVGGFGTWAVTAEISGAVIATGQIEVDRNRQIVQHPDGGVVEGIEVDEGDFVEADDLLIKLDPSVLASELAVVEGELFEILARRGRLEAERDGLDEVVFPDALQDGGDAAQDLMSGQSRLFAARQESIERATEQLSQQRAQIESQLDGIAAQKEAIETQRELLTKELTDQQALLDRGLAQASRVLALQREEADLLGRIGELTASDAQTRERMSEIDIQILGLTTTQREEAITQLRDLQFNELQLTERRRTLQQQLDRADIRAPVSGIVYGLQVFTPNSVIRAAEPVMFIVPQDRPLVIATQVQLTDVDQIFVGQDVTLRFSAFDQRRTPELKGHVTLVSADSFQDDNSSLAYYRAEVQLDEGEVERLPEDMTLIPGMPVEAFVRTDDRSPLDYLVKPLSDYFTKAFRES</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PZY0</accession>
    <name>A0A1M5PZY0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pimeloyl-ACP methyl ester carboxylesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1941</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07049.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900718.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1941"/>
    <dbReference type="EnsemblBacteria" id="SHH07049">
        <property type="protein sequence ID" value="SHH07049"/>
        <property type="gene ID" value="SAMN05444003_1941"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00111">
        <property type="entry name" value="ABHYDROLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="59"/>
            <end position="289"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH07049.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="301" mass="33392" checksum="96D8D2B2F01AB71B" modified="2017-03-15" version="1">MTYLALFLVILGVIFAVPIWLENRLRPVDEDYREKAPGTFAKLSQGVTHYRWQGSARGPVLVAIHGLLTPSLVWAALADDFGRLGYRVLTYDLYGRGFSDAPIGVQDADFFMRQLDELLDHLNLEGSISVMGYSMGGSIAGTYAAANTHRVDRTFLIASAGFETVESDFDSFCRRNTLIGDWVHDAFAARRLPKDLIADDAPSDVPELKEAQLAELGRQGFIRAVLSSRRGMLSQSLEEAMKTLAVHDLPVFAVWGDSDPVIPIRSVEMLRQWNPKATQKVIANADHALPYSHGDFVFDAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PZZ8</accession>
    <name>A0A1M5PZZ8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1942</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900898.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1942"/>
    <dbReference type="EnsemblBacteria" id="SHH07069">
        <property type="protein sequence ID" value="SHH07069"/>
        <property type="gene ID" value="SAMN05444003_1942"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008775">
        <property type="entry name" value="Phytyl_CoA_dOase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05721">
        <property type="entry name" value="PhyH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="229"/>
            <end position="249"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH07069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="263" mass="29967" checksum="D2D78902AB58E93B" modified="2017-03-15" version="1">MISKTDIEAYERDGAIVVRGVFKDWIETMAEGVAHNMAEPGQYASENDVSEGRFFDDYCNWTRIPAFENVVRNSPAAELAATAMQSETAQFFHDHVLVKEPGTPKPTPWHQDSPYYFVEGSQTVSIWIPLDPVKEASLRFIAGSHKWENLVRPVSWADDSDFYEGDYGWTPVPDPDADPSQTQVLEWAMEPGDAVLFDYRTAHGARGNTSNTRRRALSLRWVGDDARYVERPGRTSPPYPGHQMQDGQKLREDWFPVIWQKPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q0C0</accession>
    <name>A0A1M5Q0C0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">tRNA1(Val) A37 N6-methylase TrmN6</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1955</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07332.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900731.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1955"/>
    <dbReference type="EnsemblBacteria" id="SHH07332">
        <property type="protein sequence ID" value="SHH07332"/>
        <property type="gene ID" value="SAMN05444003_1955"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008757">
        <property type="term" value="F:S-adenosylmethionine-dependent methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044260">
        <property type="term" value="P:cellular macromolecule metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043412">
        <property type="term" value="P:macromolecule modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044238">
        <property type="term" value="P:primary metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002052">
        <property type="entry name" value="DNA_methylase_N6_adenine_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007848">
        <property type="entry name" value="Small_mtfrase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05175">
        <property type="entry name" value="MTS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00092">
        <property type="entry name" value="N6_MTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="MTS" evidence="1">
        <location>
            <begin position="38"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH07332.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="258" mass="27921" checksum="AC49F93F88F360CE" modified="2017-03-15" version="1">MPRSTLAAFETITKDDFLGRKVKVLQPKTGYRAGVDAVLLAASVEAKSGQRVLELGLGVGTASLCLDARVSGLSLTGVELQKNYAELARENADTNKADLTVIQADLTELPSELRQVQFAHVIMNPPYFDRAEGASSDDPGRDIAVGGATDLAEWISVGAKRLLPKGYLTLIQRIERLPEVLGATNVKLGSIIVRPIAPRTGRSPNLFLMQARHSGRAPFRMLPPLVMHEGDAHEGDFESYRSDVKAILRDGAHLGWDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q0V3</accession>
    <name>A0A1M5Q0V3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="13">CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">SAMN05444003_1965</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="10">Phospholipid metabolism.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="11">Belongs to the CDP-alcohol phosphatidyltransferase class-I family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07542.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900739.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1965"/>
    <dbReference type="EnsemblBacteria" id="SHH07542">
        <property type="protein sequence ID" value="SHH07542"/>
        <property type="gene ID" value="SAMN05444003_1965"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00601">
        <property type="reaction ID" value="UER00295"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008444">
        <property type="term" value="F:CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008654">
        <property type="term" value="P:phospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1760">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000462">
        <property type="entry name" value="CDP-OH_P_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043130">
        <property type="entry name" value="CDP-OH_PTrfase_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004570">
        <property type="entry name" value="Phosphatidylglycerol_P_synth"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01066">
        <property type="entry name" value="CDP-OH_P_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000847">
        <property type="entry name" value="Phos_ph_gly_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00560">
        <property type="entry name" value="pgsA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00379">
        <property type="entry name" value="CDP_ALCOHOL_P_TRANSF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="6" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="7 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0594">Phospholipid biosynthesis</keyword>
    <keyword evidence="9" id="KW-1208">Phospholipid metabolism</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 11 13" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 12" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="7"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="34"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="74"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="188"/>
            <end position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00025707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU003750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHH07542.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="221" mass="24782" checksum="6B645B3C45B510DB" modified="2017-03-15" version="1">MKLNLPNILTILRLLAAPGVAVMFLYFTRPWADWFALVLFVGAAITDFLDGYLARAWKQESRLGAMLDPIADKAMVVIALLVITGFSGMNPWLLLPATAIIFREVFVSGLREFLGDTAGTLKVTNLAKWKTFTQMVAIAVLFAKGAFEHFLIEQTIGMDQELIDAILAGEVADEVGLRWKEFGWDICWYGGITLLWIAAILTLITGWDYFQKAKPYLRENE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q1H2</accession>
    <name>A0A1M5Q1H2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1998</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08127.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900760.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1998"/>
    <dbReference type="EnsemblBacteria" id="SHH08127">
        <property type="protein sequence ID" value="SHH08127"/>
        <property type="gene ID" value="SAMN05444003_1998"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH08127.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="70" mass="8272" checksum="528A1AEEFB942B8B" modified="2017-03-15" version="1">MQRIQLGDVRYNAKHGAFEARVDIHRDGQVFRYPCEVKGPLNMDIDRVREHLTQRALNMSDTPQRLHSHF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q2I7</accession>
    <name>A0A1M5Q2I7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">8-oxo-dGTP diphosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2001</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08192.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900763.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2001"/>
    <dbReference type="EnsemblBacteria" id="SHH08192">
        <property type="protein sequence ID" value="SHH08192"/>
        <property type="gene ID" value="SAMN05444003_2001"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020084">
        <property type="entry name" value="NUDIX_hydrolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00893">
        <property type="entry name" value="NUDIX_BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="2">
        <location>
            <begin position="4"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH08192.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="146" mass="16824" checksum="4BE4DAB6F82B4B3E" modified="2017-03-15" version="1">MAEQSFHGCKVALFIGDKLLISLRDDKPDIPYPNMWDFVGGGREGNETPEDTLIRETKEEVGLDLQPEDLIWKRRYRANFRPDVHVFFFVARLPASHEAKIVFGDEGQGWKLVSMSEFLLIPNMVPSYVSRLGDWQTRRSQADIPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q3J2</accession>
    <name>A0A1M5Q3J2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pre-peptidase C-terminal domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2010</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08371.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900770.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH08371">
        <property type="protein sequence ID" value="SHH08371"/>
        <property type="gene ID" value="SAMN05444003_2010"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007280">
        <property type="entry name" value="Peptidase_C_arc/bac"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04151">
        <property type="entry name" value="PPC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012409451" evidence="1">
        <location>
            <begin position="24"/>
            <end position="406"/>
        </location>
    </feature>
    <feature type="domain" description="PPC" evidence="2">
        <location>
            <begin position="321"/>
            <end position="384"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH08371.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="406" mass="42571" checksum="AD7ACC1B7C011121" modified="2017-03-15" version="1">MKSFHLKSAALSCAMLSFAAPLAAQEFCAGLGSSGVWIGGSEGSSDIATADNYREQMALVLGGSEYVSVFTLSQPSNVRIEAQGRGSGDPLIDVLDQNGSLVVSDDDSGGNGASRAEIPLDAGTYCVSTRSYDSSPMTAFVRIGREEQEPLTDGVANTSTNTGSGSGALGCAEADSIGVLSTTLQSELSVNQAPFLRFTLDAPLTLSLTAENQDADPVLTLYDGDENYIDENDDSDGLNSRIDVTETLPAGDYCIGLDALNDADLPILVTVSEYDPAAALMALVDRAEAAPPLDGTVEIADLGDLATRIRRDAQVTDKAMWFSVNVPEGGLMLIEAISVDGTGDPLVALYDDFGRQVALNDDYGDGLDSQVAARIGAGTYYIGLKEVSPDSQSFIRMGLERWVPAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QHZ5</accession>
    <name>A0A1M5QHZ5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DNA-binding transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2118</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH13419.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2118"/>
    <dbReference type="EnsemblBacteria" id="SHH13419">
        <property type="protein sequence ID" value="SHH13419"/>
        <property type="gene ID" value="SAMN05444003_2118"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH13419.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="289" mass="32121" checksum="DF7CECA6CC46220A" modified="2017-03-15" version="1">MAVILNGSVTAAAADLGISQPATSRLLSDLSKEFDFQLLDKRDGRLIPTQETRLLQPDIQRVLELMSQISEVSKDITNRQAGHLRVACLPGFATSHLPGVVSKFLEKRPGVRMTIEPDRPERILEWMIGEQYDFGITDGFTGHPAVESINVDIRTVCVFPTGDDLGKLETVTPQDLVGKDFIQPHRDSDFYHQISKAFSDAHVPIQPRVEVRQFTAACELVCNGAGVAIVSELDAVKYRESGLCSRPFYPSLPHSLSLVRPILKKPSLLTLEFIEYFEASLSPYQLTKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QIC5</accession>
    <name>A0A1M5QIC5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2129</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH13656.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900933.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2129"/>
    <dbReference type="EnsemblBacteria" id="SHH13656">
        <property type="protein sequence ID" value="SHH13656"/>
        <property type="gene ID" value="SAMN05444003_2129"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="544"/>
            <end position="571"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="544"/>
            <end position="569"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH13656.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="833" mass="94044" checksum="60EE9505457B1950" modified="2017-03-15" version="1">MTSVSKELAFRANAGIKDILGQGLILDDNIAIIELIKNAKDASSPNVKLRFKDRTKSAPSELILKDFGDGMSIADISDKWLNIAYSEKKVANSERNKPFAGSKGVGRFSCDRLGKKLTLYTKASTGDFIKLPIEWALFETGMIDAEISTIKLRYEVLSKQEFLDEIGEPDFNTGTVLRISDLRSSWDERRILRLRSELEKFISDPDSSFEVTLQINEEPEQKISNSVFEDLALRTYNIESNIDAAGDLLTTELRYHGELVYSYEVENPYKFLKNIRVSIHYMNFSSKLFFKRKTGYSANDYGSVFMYLNGFRVSPLGNPKNDWLGLDQRKTQGTSRYLGTRDVIGQVSVVDSENLFKPVTSREGLVQDEPYRELTASDPEARVKLRNGETDYGYIPHIIRQLERFIVDGVHWDGLMDLSDPNRRNISEKDIRADPSNFGIRTIDQSAVKDAIDKTLRTSNFDIRSFRINEELIAKLAHEAEDAYNEYVLSFIQNTTDKSFEELSSIDKGNFKKIAQRNMEAIKAEKEARLEAIAQRIRAEEAERRAEQERARAEQAEKQEHDAKAREATAAAARDVAVKQAKLEKTEREKVEARLRVTADENMFLRLDATKDHDHVLNLHHQTALYSSIAATDAENLKHILLDEDDFDRDEALEYLASIEESIEKISKFSNYATGGKYKVALKSVKGNLTNFVSEYLEDLKQNPSELRRINVVNSLSEASEFEAQFSPLDVMILVDNLISNAKRHGAKKIAFLPSQSKSGVFCIADNGTGLDASISDPSQIFHKGFTTRTEGSGRGLFHVANTLRAIDLEISVCDEPIDGWSGLALEVTRIAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QIE5</accession>
    <name>A0A1M5QIE5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2130</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH13676.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2130"/>
    <dbReference type="EnsemblBacteria" id="SHH13676">
        <property type="protein sequence ID" value="SHH13676"/>
        <property type="gene ID" value="SAMN05444003_2130"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH13676.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="309" mass="35685" checksum="C541FD227B93D024" modified="2017-03-15" version="1">MLIKFSVLWVEDDDRWYRASHRALERYLKDLGFHLVVTRISDPENTQWDQHFVNTSQYDLMLVDWRVEDTDKVDKPVGGDVIAKIREQVPYSDILFYSGSAGLEQEVYDKRLQGVYTAQRNEVRDEARELIEHLLHKTLHPKIMRGIIVSSLSQIDDMCFKIIEHKFNEEGCDKDAFADGFRKTLLKQAKGQLKYKEKAAEKDNDAFIASLHSTMILDSHKRASKIVELAEGDLHKDDHTTLSSLPDTISKRNWLAHWTRIEETDAQIVLAEDGKANYIFDQTEAIRMRKEINKAADILSKYVASLTSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QLM8</accession>
    <name>A0A1M5QLM8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ComF family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2195</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901476.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2195"/>
    <dbReference type="EnsemblBacteria" id="SHH15004">
        <property type="protein sequence ID" value="SHH15004"/>
        <property type="gene ID" value="SAMN05444003_2195"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044005">
        <property type="entry name" value="DZR_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18912">
        <property type="entry name" value="DZR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DZR_2" evidence="1">
        <location>
            <begin position="6"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18912"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH15004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="240" mass="26366" checksum="7C6798E6F801CDE1" modified="2017-03-15" version="1">MLMQSLIQAIYPPQCIACAAPTDMEHGLCGECWPQTKFITGTICDKCGVPLPGDAGGVVFHCDDCMRIARPWDRGRAALAYADVGRKLVLGLKHGDRLDYLPTMSRWMAASGKDLFQGNPLLVPVPLHRWRLFRRKYNQAAELTKSMGRITGHEVCLDALVRAQQTPKLDGKSREERFQILQDVIKPNSERSKQIQSRSIVLIDDVMTSGATLAACTGACKKAGAETVSVLVLARVAKDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QMK4</accession>
    <name>A0A1M5QMK4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Poly(A) polymerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2204</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15206.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901047.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2204"/>
    <dbReference type="EnsemblBacteria" id="SHH15206">
        <property type="protein sequence ID" value="SHH15206"/>
        <property type="gene ID" value="SAMN05444003_2204"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031123">
        <property type="term" value="P:RNA 3'-end processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd05398">
        <property type="entry name" value="NT_ClassII-CCAase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002646">
        <property type="entry name" value="PolA_pol_head_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032828">
        <property type="entry name" value="PolyA_RNA-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01743">
        <property type="entry name" value="PolyA_pol"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12627">
        <property type="entry name" value="PolyA_pol_RNAbd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="1 3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PolyA_pol" evidence="4">
        <location>
            <begin position="28"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="domain" description="PolyA_pol_RNAbd" evidence="5">
        <location>
            <begin position="183"/>
            <end position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01743"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF12627"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH15206.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="378" mass="41936" checksum="A290DD5E417EF191" modified="2017-03-15" version="1">MTRINAPWLTSSASKRICDAFQSRGYEIFFVGGCVRNQLMDREVTDLDLATNAEPSEMLGLADAEGIKVIPTGIDHGTVTFVEDGVPYEITTFRNDVETDGRRAVVAFSNDYREDAKRRDFTMNALYAKPDGTVLDPVDGLTDLKSGIVRFIGDANLRIKEDYLRILRFFRFHAWYGDTNEGIEPEGLAACAEHVDQLPSLSKERVTTELLKLLSAPDPSVAVASMEAIGALMHVLPGSSATALPVLIHLEAEYGLVVDPIARLCALGGEPENHMRLSKAQERTLSAYRDVYETPYEAGYRLRDLALHNLMIQAAHFGVNLDTKQVENAKIGMSVEFPVKALDLMPTLSGKALGDKLKELEQRWIISEFQLTKDQLLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QN25</accession>
    <name>A0A1M5QN25_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Chromosome segregation DNA-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2220</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Involved in chromosome partition. Localize to both poles of the predivisional cell following completion of DNA replication. Binds to the DNA origin of replication.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the ParB family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15527.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901075.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2220"/>
    <dbReference type="EnsemblBacteria" id="SHH15527">
        <property type="protein sequence ID" value="SHH15527"/>
        <property type="gene ID" value="SAMN05444003_2220"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041468">
        <property type="entry name" value="HTH_ParB/Spo0J"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004437">
        <property type="entry name" value="ParB/RepB/Spo0J"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003115">
        <property type="entry name" value="ParB/Sulfiredoxin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036086">
        <property type="entry name" value="ParB/Sulfiredoxin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17762">
        <property type="entry name" value="HTH_ParB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02195">
        <property type="entry name" value="ParBc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00470">
        <property type="entry name" value="ParB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110849">
        <property type="entry name" value="SSF110849"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00180">
        <property type="entry name" value="parB_part"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ParB" evidence="4">
        <location>
            <begin position="37"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00025472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH15527.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="291" mass="31978" checksum="9A208724E035F0BB" modified="2017-03-15" version="1">MADKKSKPRGLGRGLSALMADIPQDMNEGSKPQKLDAMVPIEKVSPNPDQPRRSFNQSALEELAESIRIKGVIQPLIVRQKGDGYEIVAGERRWRASQIAQLHKVPVVVRDFTDTEVLEVAIIENIQRADLNAIDEAAGYRQLMDRFGHTQEQVASALGKSRSYIANYLRLMTLPKDVQSWIKDGSLTAGHARALVGNEEASQLAAHIIRKGLSVRDTEKLVKTGLNKPSARQATPKVKDADTVQIEKELSATLKMPVNIQHQAGGEGGKISISYKSFEQLDDLLRVLSGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QR93</accession>
    <name>A0A1M5QR93_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized conserved protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2261</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16309.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901136.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2261"/>
    <dbReference type="EnsemblBacteria" id="SHH16309">
        <property type="protein sequence ID" value="SHH16309"/>
        <property type="gene ID" value="SAMN05444003_2261"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="155"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="17"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="2">
        <location>
            <begin position="79"/>
            <end position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH16309.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="412" mass="43030" checksum="6AF378BFFE2D61F7" modified="2017-03-15" version="1">MAKKSSPKNNDLVEDVIDAEEIKEPEESVEEAEDAVAEAVEPLEEEAATEAEAEVVEEATKVDTSEAPASEAPAKEVIAPEPSPTPPSEPPRQPSTFMPMLLGGLVAGGLGFGAGYYLYNQSNQDIPGQVEALQSQLEELAAQSQVDLNPINDAISGLEGNVEQVQSNLAAAIAELAARVDTVERQPNGDGTLSESAASAYESDIQALRDQLTAQQSEMQAMLDATSQQLEETQKEAAAIEEQTVAAAKAATARSALARIQTALDAGAPFGAVLAELEAVVDEPIPDALTQAQDGVPTLAVLSAEFPEAARAALTMARVEGASGEETTGFSAFLRNQFSVRSVVPQEGGSVDAILSRAQGALDEGRLNDALAEVASVPEVARVEVSDWVARAELRADAVDAASSLFTTYNSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QU03</accession>
    <name>A0A1M5QU03_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2320</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17575.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901233.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2320"/>
    <dbReference type="EnsemblBacteria" id="SHH17575">
        <property type="protein sequence ID" value="SHH17575"/>
        <property type="gene ID" value="SAMN05444003_2320"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH17575.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="205" mass="22969" checksum="D1F520D2241B1B65" modified="2017-03-15" version="1">MTQDMTKEERRARQARQREKKDALRRDMLKKMPKEAVCVEIGVWKGEFSTILVEELRPKHLYLIDPWAVQDDAAGGASLAGAQDKARMDRIHDHVAEKFAQQIASGSVSILRDFSVPALATFDGGAIDFAYVDGDHTYEGVLSDLEALHPKLKVGGVVMMDDYHQRGWWGDGVIRALNTFVGRLPAHYRFKMMAGAQIAVSKLKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QUL6</accession>
    <name>A0A1M5QUL6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Putative hydroxymethylpyrimidine transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2331</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17805.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901249.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2331"/>
    <dbReference type="EnsemblBacteria" id="SHH17805">
        <property type="protein sequence ID" value="SHH17805"/>
        <property type="gene ID" value="SAMN05444003_2331"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="7"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="51"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="86"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="167"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="213"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="48"/>
            <end position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH17805.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="248" mass="26586" checksum="699EE718E1C7E1B1" modified="2017-03-15" version="1">MRWFYGVTAMMVGLVLWQAIVWITGVPKFILPSPLQVAEAAYTSRALIAEHAIVTITEVIIGLLIGTVLGAVTAIQLAGSQTLQRLMLPILVFTQAVPVFALAPILTLWFGYGMASKIVMAVLIIYFPVTSAFHDGLSRVDTGLIDLARTMGATKNQIMRRIRIPHALPSLATGMRLAAVYAPIGAVIGEWVGSSEGLGYLMLLASGRVKIDLMFASLITLAIITVILHTAVGILADRLSRYAQGVTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QVT1</accession>
    <name>A0A1M5QVT1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycosyl transferase family 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2351</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18235.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901283.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2351"/>
    <dbReference type="EnsemblBacteria" id="SHH18235">
        <property type="protein sequence ID" value="SHH18235"/>
        <property type="gene ID" value="SAMN05444003_2351"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="1">
        <location>
            <begin position="14"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH18235.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="312" mass="35570" checksum="63EC432B87EB60EC" modified="2017-03-15" version="1">MTQAKKEPRRYLLISPCRNEADYMRRTLESVVAQSVTPSKWVIVDDGSTDETPSILAEYAAKHPWISVVQKPDRGHRAVGPGVVEAFYFGLDTVDLSEYSYSCKLDLDLDLPPRYFEILMEKMEANPRIGTCSGKPYFRNAQGQMVSEKCGDEMSVGMTKFYRRACFDQIGGYVREVMWDAIDCHKARQLGWIAASWDEPDLRFEHLRPMGSSQKSIYTGRRRHGFGQYFMGSDPLYFSATAIYRMAHPPYVTGGLATLQGYISAWWRGEAQLDDPELRHFIRAYQRRALVVGKSKAISEIEDRLSGNFQPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QY76</accession>
    <name>A0A1M5QY76_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2382</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH18816">
        <property type="protein sequence ID" value="SHH18816"/>
        <property type="gene ID" value="SAMN05444003_2382"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH18816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="165" mass="17701" checksum="F835C2B24F2FE64B" modified="2017-03-15" version="1">MHRAIDDVIDAFSNPVLYTEIHAIPTTGRSVYEGYLSSELSDQTDNFPDELIANLKITVRFEANGVNATGRATNFHDENDDALNGSLVLSAGQLDRTGNPNNDATFTVALNGDLEAQNGQIRSIESRLEGDFLGSQQNAIGGKLFGRARKGGSAQNIDGSFIAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R0P4</accession>
    <name>A0A1M5R0P4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2438</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19932.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901406.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH19932">
        <property type="protein sequence ID" value="SHH19932"/>
        <property type="gene ID" value="SAMN05444003_2438"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032874">
        <property type="entry name" value="DDE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13610">
        <property type="entry name" value="DDE_Tnp_IS240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DDE_Tnp_IS240" evidence="1">
        <location>
            <begin position="78"/>
            <end position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13610"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH19932.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="235" mass="28315" checksum="FEE84214EC832960" modified="2017-03-15" version="1">MTRSSPFRYFKASPDIIRLAEMMYVRFPLSLRNVEDLLHERGIDVSYETIRFWWNRFGPIFAAKIRRRRVSQKRAYSNWQWHLDEVFVKINGETHYLWRAVDHEGEVLESFVTKRRDRTVALKFLRKSMKCYGQPEIVVTDRLKSYGAAMKAIGNLQRQTTGRWLNNRAENSHLLFRRRERAMLRFRQLRSLQKFVAIHTSVQDHFNQERHIYSRTIFKLSRATALTEWRQLCSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RA41</accession>
    <name>A0A1M5RA41_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2472</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23227.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901542.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2472"/>
    <dbReference type="EnsemblBacteria" id="SHH23227">
        <property type="protein sequence ID" value="SHH23227"/>
        <property type="gene ID" value="SAMN05444003_2472"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012657747" evidence="1">
        <location>
            <begin position="25"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH23227.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="148" mass="16853" checksum="77BD0DE4158204C1" modified="2017-03-15" version="1">MYKTMIAGVTALSLTVASAQPAQANGFSDEDVGKLLFGLIATYAIGSAIKNHNDRSRSEPQQVERAAPVHQGWVHRPNRNVLPRQCLQRVGTNFGEHRIFNRRCLRQEYAFVSDLPRRCAVRLFTYRGPVRGYDPRCLRESGFRARRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RBD5</accession>
    <name>A0A1M5RBD5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LPS-assembly lipoprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2492</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23654.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2492"/>
    <dbReference type="EnsemblBacteria" id="SHH23654">
        <property type="protein sequence ID" value="SHH23654"/>
        <property type="gene ID" value="SAMN05444003_2492"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019867">
        <property type="term" value="C:outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043165">
        <property type="term" value="P:Gram-negative-bacterium-type cell outer membrane assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007485">
        <property type="entry name" value="LPS_assembly_LptE"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04390">
        <property type="entry name" value="LptE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH23654.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="168" mass="17341" checksum="C8BB513C7679A1C7" modified="2017-03-15" version="1">MSSNRTHPFALRRGLLIGVLALGACGFTPVYGPGGSGGKLQNSVAFTAPATELGFRVRTTLEDRFGAVSGSAENYSVNIDLSSSQGSAAINEAGDITRLDIQGTARWDLTNADQTYSTGDDVRATTSYSATGTTVATQAAERDAVERLAQILADRIAAGLILASGSLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RD60</accession>
    <name>A0A1M5RD60_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">4-hydroxy-tetrahydrodipicolinate reductase</fullName>
            <shortName evidence="9">HTPA reductase</shortName>
            <ecNumber evidence="9">1.17.1.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">dapB</name>
        <name evidence="12" type="ORF">SAMN05444003_2521</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>(S)-2,3,4,5-tetrahydrodipicolinate + H2O + NAD(+) = (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:35323"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16845"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:67139"/>
            <dbReference type="EC" id="1.17.1.8"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>(S)-2,3,4,5-tetrahydrodipicolinate + H2O + NADP(+) = (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:35331"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16845"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:67139"/>
            <dbReference type="EC" id="1.17.1.8"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="9">Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; (S)-tetrahydrodipicolinate from L-aspartate: step 4/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 9">Belongs to the DapB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Was originally thought to be a dihydrodipicolinate reductase (DHDPR), catalyzing the conversion of dihydrodipicolinate to tetrahydrodipicolinate. However, it was shown in E.coli that the substrate of the enzymatic reaction is not dihydrodipicolinate (DHDP) but in fact (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinic acid (HTPA), the product released by the DapA-catalyzed reaction.</text>
    </comment>
    <dbReference type="EC" id="1.17.1.8" evidence="9"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24234.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901886.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2521"/>
    <dbReference type="EnsemblBacteria" id="SHH24234">
        <property type="protein sequence ID" value="SHH24234"/>
        <property type="gene ID" value="SAMN05444003_2521"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00018"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008839">
        <property type="term" value="F:4-hydroxy-tetrahydrodipicolinate reductase"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016726">
        <property type="term" value="F:oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019877">
        <property type="term" value="P:diaminopimelate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00102">
        <property type="entry name" value="DapB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022663">
        <property type="entry name" value="DapB_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000846">
        <property type="entry name" value="DapB_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022664">
        <property type="entry name" value="DapB_N_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023940">
        <property type="entry name" value="DHDPR_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20836">
        <property type="entry name" value="PTHR20836"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05173">
        <property type="entry name" value="DapB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01113">
        <property type="entry name" value="DapB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000161">
        <property type="entry name" value="DHPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00036">
        <property type="entry name" value="dapB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01298">
        <property type="entry name" value="DAPB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 9" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="2 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 9" id="KW-0220">Diaminopimelate biosynthesis</keyword>
    <keyword evidence="8 9" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="7 9" id="KW-0520">NAD</keyword>
    <keyword evidence="4 9" id="KW-0521">NADP</keyword>
    <keyword evidence="6 9" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DapB_N" evidence="10">
        <location>
            <begin position="7"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="domain" description="DapB_C" evidence="11">
        <location>
            <begin position="131"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="region of interest" description="(S)-2,3,4,5-tetrahydrodipicolinate binding" evidence="9">
        <location>
            <begin position="168"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="9">
        <location>
            <position position="158"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="9">
        <location>
            <position position="162"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="11"/>
            <end position="16"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="37"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="38"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="101"/>
            <end position="103"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="125"/>
            <end position="128"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="159"/>
        </location>
        <ligand>
            <name>(S)-2,3,4,5-tetrahydrodipicolinate</name>
            <dbReference type="ChEBI" id="CHEBI:16845"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF01113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF05173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHH24234.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="269" mass="27877" checksum="F866C45EAF5CEF2E" modified="2017-03-15" version="1">MTELPGIVITGGSGRMGQMLINTVLNSDKAKLVGVVDRAGHDWVGQDIGVAMGGAAVGVTVTDDPVQVFAQAQAVIDFTSPAATVEFAGLAAQARAVHVIGTTGLTEDDIAAIGRAARHTRIVRAGNMSLGVNLLVKLTQMVAEALDDDFDIEVIEAHHHHKVDAPSGTALMLGEAAAKGRGVNLNDVSDSGRDGITGARTKGDIGFSAIRGGDIVGEHDVLFAAAGERIVLRHLATDRAIFARGAVKAALWGLDKDPGEYDMFDVLGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5REX5</accession>
    <name>A0A1M5REX5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">NADP-dependent 3-hydroxy acid dehydrogenase YdfG</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2540</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24646.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901647.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2540"/>
    <dbReference type="EnsemblBacteria" id="SHH24646">
        <property type="protein sequence ID" value="SHH24646"/>
        <property type="gene ID" value="SAMN05444003_2540"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH24646.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="245" mass="26922" checksum="227A52393A6FD856" modified="2017-03-15" version="1">MRNWAGKRYWLVGASEGLGRELAFSLSRAGAEVIVSARSEDRLKSLVEELPGKASFVTVDVADRAAVEAAAAEVGELDGVVYLAGVYWPMKASEWDNEKADLMGEINFLGASRVVGSVMPQFVAKNAGHIVLTGSLSGFRGLPGAIGYASSKAGMMALGESMQADLRTSPIEVQLVNPGFIKTRLTDKNDFNMPFIMSVEDAAKEMFDHMNTDTFKKSFPMVFSWVFRLSQFMPDWMYYRLFGAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RFA9</accession>
    <name>A0A1M5RFA9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Putative ABC transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_2547</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ABC-4 integral membrane protein family. LolC/E subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24776.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901656.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2547"/>
    <dbReference type="EnsemblBacteria" id="SHH24776">
        <property type="protein sequence ID" value="SHH24776"/>
        <property type="gene ID" value="SAMN05444003_2547"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003838">
        <property type="entry name" value="ABC3_permease_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038766">
        <property type="entry name" value="Membrane_comp_ABC_pdt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30287">
        <property type="entry name" value="PTHR30287"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02687">
        <property type="entry name" value="FtsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="223"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="266"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="322"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="367"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="394"/>
            <end position="413"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="440"/>
            <end position="460"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="664"/>
            <end position="690"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="711"/>
            <end position="738"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="758"/>
            <end position="778"/>
        </location>
    </feature>
    <feature type="domain" description="FtsX" evidence="8">
        <location>
            <begin position="698"/>
            <end position="785"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH24776.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="796" mass="84577" checksum="C5E485A13FDAE48D" modified="2017-03-15" version="1">MIRTTLAALMSYWRRNLLQLITLLAGIALATALWSGVQAVNAEARASYDAAAATLGEGRFDHLRAADGGSIDQETFVALRRAGWLVSPIVEGRINGVRVIGLDALTAPIGIAPVSLTEQADLGAFLSGGGQIFGRPDALAALEGTVEAELIADPNIAPQTLTTDLVFAQELLGREGEIDRLLIATVQPKQQATLAEIAPNLTRISAQSGSDIGRLTDSFHLNLTAFGFLSFAVGFFIVHSAIGLAFEQRRPMIRTIRALGVPLNILLALMMVELILFALIAGVAGVILGYFIASALLPDVAATLQGLYGANVSGTLAFRASWWATGLLIALGGTTIASVSAFLKLAKMPLLAGGQIRAHVMVAGRRAAVLAILAAACAVLAVILAATADGLVSGFALLASVLIGAALALPLILDQMLRASQSLSSGAKAQWFWADTRQQLPGLSLALMALLLAMAANVGVSTMVSSFRLTFVDFLDQRLASELYLTVEEDRAKEITGYLEPRVDAILPIVSAEAQIKGVETEVFGARVHSTQRDNWTFLDAMADPWDQVAGGAGILLNEQLARRTDTWPGAIVALGGQSFEVVGVYGDYGNPIGQAIVSEEVFAELYPEEIANNFGLRISVDQVDDLLSDLETQFGISSENVINQAEIKAFSLQVFERTFTVTAALNVLTLAVAGFAILMSLLTLAAMRVPQLAPVWAVGITRRSLGQLELLRALILAFFTILIAVPLGIVLAWVLLAVVNVAAFGWKLPLFLFPADYLQLAILSLLAAALAAFWPALKLTRLRPAELLKVFANER</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RFS6</accession>
    <name>A0A1M5RFS6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycoside/pentoside/hexuronide:cation symporter, GPH family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2538</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sodium:galactoside symporter (TC 2.A.2) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24603.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901644.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2538"/>
    <dbReference type="EnsemblBacteria" id="SHH24603">
        <property type="protein sequence ID" value="SHH24603"/>
        <property type="gene ID" value="SAMN05444003_2538"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015293">
        <property type="term" value="F:symporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008643">
        <property type="term" value="P:carbohydrate transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039672">
        <property type="entry name" value="MFS_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11328">
        <property type="entry name" value="PTHR11328"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="36"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="74"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="100"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="170"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="215"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="243"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="277"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="301"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="342"/>
            <end position="362"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="382"/>
            <end position="402"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH24603.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="408" mass="43404" checksum="BC4C690E0ADAF160" modified="2017-03-15" version="1">MNALGQRLPAYSLFAAVIAAAGLPIYIYAPKYYADTYGVSLTALGALLFALRLFDVVQDPVLGWISERLRGGKAFWVSMGAVLLAVSMWGLFAVDPLFDPIWWFGLTITGLFTAFSFLTINFYAQGVGKASQVHGGHVRLAAWRETGGLLGVCIAAVAPTIMMGSTENPFAVFAGGFVVVVAVATLWMWPEWSGRTETEPTEIREIIADPLARRLLILALFNATPLAVSSTLFLFFVESRLGAVGWEGPLLVLFFLAAAISAPLWSKLAQRYGAKGTLLTAMALAILSFAYALTLSTGDEIQFAVICVLSGATIGADLTLLPAMFARRMSVVSPNGGQGFGLWSLVSKFTLAFAAVILLPILENAGFAAGQTDLPESALTTLTVLYAGVPCILKLVAVAILATTTLEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RJM7</accession>
    <name>A0A1M5RJM7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2629</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26507.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH26507">
        <property type="protein sequence ID" value="SHH26507"/>
        <property type="gene ID" value="SAMN05444003_2629"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011250">
        <property type="entry name" value="OMP/PagP_b-brl"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56925">
        <property type="entry name" value="SSF56925"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012296571" evidence="1">
        <location>
            <begin position="22"/>
            <end position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH26507.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="253" mass="25716" checksum="58F368BAC8FC0151" modified="2017-03-15" version="1">MKYLFLSLGLASIAACGSSPSGPSTLNLVSTPTGTGSFAVSFNSGADIYTVEIEGDMDLLVGDPALDLNTFDRSSNPISGTGMYASIGDQSSVSLLQTEGAINLTAAQYQRLTAGPVAQSGVVNLSGNYIAFLTNPVDDTLTFIANGDAALTVILNNATVSGEVTNRILRNKDTIVPIGTTLADLTLNSTNLSSNGTFSGSTSGGGFAASTVTDASYQGLIAGPNSEEAVGVVTLRHLTAATIDETGIFAFGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RJV4</accession>
    <name>A0A1M5RJV4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Carboxyl-terminal processing protease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2611</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the peptidase S41A family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26093.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901753.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2611"/>
    <dbReference type="EnsemblBacteria" id="SHH26093">
        <property type="protein sequence ID" value="SHH26093"/>
        <property type="gene ID" value="SAMN05444003_2611"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008236">
        <property type="term" value="F:serine-type peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd07560">
        <property type="entry name" value="Peptidase_S41_CPP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.42.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001478">
        <property type="entry name" value="PDZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041489">
        <property type="entry name" value="PDZ_6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036034">
        <property type="entry name" value="PDZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004447">
        <property type="entry name" value="Peptidase_S41A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005151">
        <property type="entry name" value="Tail-specific_protease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17820">
        <property type="entry name" value="PDZ_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03572">
        <property type="entry name" value="Peptidase_S41"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00228">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00245">
        <property type="entry name" value="TSPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50156">
        <property type="entry name" value="SSF50156"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00225">
        <property type="entry name" value="prc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50106">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 7" id="KW-0645">Protease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0720">Serine protease</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012229147" evidence="5">
        <location>
            <begin position="24"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="domain" description="PDZ" evidence="6">
        <location>
            <begin position="88"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="366"/>
            <end position="403"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="367"/>
            <end position="387"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009179"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU004404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH26093.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="445" mass="47518" checksum="142853088EC3AE39" modified="2017-03-15" version="1">MKRLMMAAAGGAVLGLVTTTQVAGPLIAQEASQNGSLYEQLDLFGDIFERIRAGYVEDVDEKELIEAAINGMLTSLDPHSSYLSADDAADMRVQTRGEFGGLGLEVTQEDGFVKVVSPIDGTPAAAAGMEAGDFVTAVDGESLLGLTLDEALEFLRGPVGSEVIITVVREGEIEPFDVSIIRDTIKLTAVRARTEGKAVVLRVTTFNGQTFPNLQEGLKEQVEEAGGIENVDGFIIDLRNNPGGLLNQAVFVSDAFLDAGEIVSTRGREPQDGERYNATPGDLAEGKPIVVLINGGSASASEIVAGALQDHRRAIVVGTKSFGKGSVQTVIPLQGDGAMRLTTSRYYTPSGRSIQALGISPDIIVEQPRREPVDPNAEEDEGPQFRSEADLRGSLGNDSLSEDEIRQIEEDRARAEAAAQLREEDYQLAYAIDILKGLNALDLQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RMB7</accession>
    <name>A0A1M5RMB7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Short-chain dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2661</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH27256.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901833.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2661"/>
    <dbReference type="EnsemblBacteria" id="SHH27256">
        <property type="protein sequence ID" value="SHH27256"/>
        <property type="gene ID" value="SAMN05444003_2661"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH27256.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="275" mass="30595" checksum="4AD2DB28CAD43A06" modified="2017-03-15" version="1">MTQKSVLITGSSSGIGYDAAHGLRDAGWRVFASCRKQADCDRLITEGFESPLIDYTDSNTLANGLAEVLEATGGTLDALYNNGAYVCPGAVEDLPRGALREIFETNLFGLHELTTMVIPVMRNQGYGRIVNCSSVLGMVGMKWRGAYVATKFAMEGLTDVLRIEMEDTPIDIILIEPGPITSDIRQNAIPHFEKWIDWENSARSRLYAALRDRLYTDTGPDPFELPASAVTKKLRHALESKRPKARYYVTTPTYMMGTFRRILSTRMLDRIISKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RTW8</accession>
    <name>A0A1M5RTW8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Integrase core domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2690</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH29694.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH29694">
        <property type="protein sequence ID" value="SHH29694"/>
        <property type="gene ID" value="SAMN05444003_2690"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13683">
        <property type="entry name" value="rve_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="2">
        <location>
            <begin position="1"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="44"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH29694.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="69" mass="8253" checksum="7A370B5B1C3BB7FD" modified="2017-03-15" version="1" fragment="single">WENGYCESFNARLRDELLNGEVFYSLREAQILIEKWRKHYNTKRPHSALGYRPPAPETIVPMEPRPIMH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RUC5</accession>
    <name>A0A1M5RUC5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Two component transcriptional regulator, LuxR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2695</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH29780.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901938.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2695"/>
    <dbReference type="EnsemblBacteria" id="SHH29780">
        <property type="protein sequence ID" value="SHH29780"/>
        <property type="gene ID" value="SAMN05444003_2695"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="5"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="137"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH29780.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="210" mass="22635" checksum="EADC505A0329EB55" modified="2017-03-15" version="1">MRNLTAVVADDHQLIRDGLVKLLNAYRGMEVVGEADNGISAVTLAKTHKPDLMTLDIAMPHAQGIAVYTEVRRWSPDTKIAVFSGITSVALMRDLYAAGAHGMFTKRSDISEFEQSIPILLKGGRVISADAAAMIDAATETTSLSAREQQILSLIANGQTTKTIAKTLGLSPKTVENHRSNIMSKLEVGSMAELLAYALREGLLDSQNQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RUR4</accession>
    <name>A0A1M5RUR4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Dihydropyrimidinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2705</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="PTM">
        <text evidence="2">Carbamylation allows a single lysine to coordinate two divalent metal cations.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the metallo-dependent hydrolases superfamily. Hydantoinase/dihydropyrimidinase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH29994.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901956.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2705"/>
    <dbReference type="EnsemblBacteria" id="SHH29994">
        <property type="protein sequence ID" value="SHH29994"/>
        <property type="gene ID" value="SAMN05444003_2705"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016810">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01314">
        <property type="entry name" value="D-HYD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011778">
        <property type="entry name" value="Hydantoinase/dihydroPyrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011059">
        <property type="entry name" value="Metal-dep_hydrolase_composite"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01979">
        <property type="entry name" value="Amidohydro_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51338">
        <property type="entry name" value="SSF51338"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02033">
        <property type="entry name" value="D-hydantoinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidohydro-rel" evidence="3">
        <location>
            <begin position="47"/>
            <end position="420"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-carboxylysine" evidence="2">
        <location>
            <position position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR611778-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH29994.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="484" mass="52948" checksum="8EDE1E8AC8F61E4A" modified="2017-03-15" version="1">MSKVIKNGTVVTADLSYKADVLIENGSIVEIGPDLKGDETLDATGCYVMPGGIDPHVHLEMPFMGTYSSDDFESGTRAGLAGGTTMVVDFCLPNQGESLMDAIKRWDNKSTRANCDYSFHMAVTWWGEQVFNDMETVVNQRGINTFKHFLAYKGALMVNDDELFASFKRLSELGATAMVHAENGDVVAEMTAKLLAEGNTGPEAHAYSRPSQVEGEATNRAIMIADMAGVPLYVVHTSCEEAHEAIRRARQNGKRVWGEPLIQHLTLDESEYFHDDWDHAARRVMSPPFRDKKHQDSLWAGLMSGSLSCVATDHCAFTTEQKRYGVGDFSKIPNGTGGLEDRLPMLWTHGVGTGRLTPNEFVAVTSTNIAKILNCYPKKGAVLVGADADLVVWDPEKEKTITAGSQQSAIDYNVFEGHKVKGLPRFTLTRGQVAVHDGEIRTQEGHGKFVERAPNATVNKALSQWKELTAPTPVQRTGIPATGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RX81</accession>
    <name>A0A1M5RX81_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="10">ATP-dependent RNA helicase RhlE</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_2743</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902011.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2743"/>
    <dbReference type="EnsemblBacteria" id="SHH30834">
        <property type="protein sequence ID" value="SHH30834"/>
        <property type="gene ID" value="SAMN05444003_2743"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003724">
        <property type="term" value="F:RNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014014">
        <property type="entry name" value="RNA_helicase_DEAD_Q_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51195">
        <property type="entry name" value="Q_MOTIF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 10" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Q_MOTIF" evidence="9">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase ATP-binding" evidence="7">
        <location>
            <begin position="32"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="8">
        <location>
            <begin position="231"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="367"/>
            <end position="435"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Q motif" evidence="5">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="367"/>
            <end position="381"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="6">
        <location>
            <begin position="421"/>
            <end position="435"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH30834.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="435" mass="47191" checksum="E0E3F0341D599959" modified="2017-03-15" version="1">MDFDMLGLAPRLVKKLSEQGITDPTPIQTQAIPHAMNGRDVMGLAQTGTGKTAAFGLPMIDALLKAGVKPEPKTARGLILAPTRELAKQIADNLSAYTQGTHLKVALVVGGVGIVGQSKRLQKGVDLLVATPGRLIDLMDRKAISLHETIYLVLDEADQMLDMGFIHALRQIALLLAEDRQTMMFSATMPKLMNELAQTYLKNPVRVQVNPPGQAATKIKQSVHYVAQASKMDLLLELLDSHRDDLALVFGRTKHGCEKMARVISSKGFAVDSIHGNKSQGQRDRAIQAFKDGKVKILVATDVAARGIDIPGVMWVYNFDLPNVAENYVHRIGRTARAGAGGTAVALCAPDEMIELQDIERAMKEEIPTASGRRWEVQPGQKKRPNGRTGKGRGRPNGGKPSGNKPQARGSKSGKPNEGGKPRRPRRRGKKPSKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RY52</accession>
    <name>A0A1M5RY52_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">FMN dependent NADH:quinone oxidoreductase</fullName>
            <ecNumber evidence="6">1.6.5.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Azo-dye reductase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">FMN-dependent NADH-azo compound oxidoreductase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">FMN-dependent NADH-azoreductase</fullName>
            <ecNumber evidence="6">1.7.1.17</ecNumber>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">azoR</name>
        <name evidence="8" type="ORF">SAMN05444003_2756</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Also exhibits azoreductase activity. Catalyzes the reductive cleavage of the azo bond in aromatic azo compounds to the corresponding amines.</text>
    </comment>
    <comment type="function">
        <text evidence="6">Quinone reductase that provides resistance to thiol-specific stress caused by electrophilic quinones.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>2 a quinone + H(+) + NADH = 2 a 1,4-benzosemiquinone + NAD(+)</text>
            <dbReference type="Rhea" id="RHEA:65952"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
            <dbReference type="ChEBI" id="CHEBI:134225"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>anthranilate + N,N-dimethyl-1,4-phenylenediamine + 2 NAD(+) = 2-(4-dimethylaminophenyl)diazenylbenzoate + 2 H(+) + 2 NADH</text>
            <dbReference type="Rhea" id="RHEA:55872"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15783"/>
            <dbReference type="ChEBI" id="CHEBI:16567"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:71579"/>
            <dbReference type="EC" id="1.7.1.17"/>
        </reaction>
        <physiologicalReaction direction="right-to-left" evidence="5">
            <dbReference type="Rhea" id="RHEA:55874"/>
        </physiologicalReaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
        <text evidence="6">Binds 1 FMN per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the azoreductase type 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="1.6.5.-" evidence="6"/>
    <dbReference type="EC" id="1.7.1.17" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31121.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902229.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2756"/>
    <dbReference type="EnsemblBacteria" id="SHH31121">
        <property type="protein sequence ID" value="SHH31121"/>
        <property type="gene ID" value="SAMN05444003_2756"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016652">
        <property type="term" value="F:oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016655">
        <property type="term" value="F:oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01216">
        <property type="entry name" value="Azoreductase_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003680">
        <property type="entry name" value="Flavodoxin_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023048">
        <property type="entry name" value="NADH:quinone_OxRdtase_FMN_depd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02525">
        <property type="entry name" value="Flavodoxin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 6" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="2 6" id="KW-0288">FMN</keyword>
    <keyword evidence="4 6" id="KW-0520">NAD</keyword>
    <keyword evidence="3 6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavodoxin_2" evidence="7">
        <location>
            <begin position="4"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="11"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="17"/>
            <end position="19"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023925"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01216"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH31121.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="178" mass="18923" checksum="0C166D164A21E255" modified="2017-03-15" version="1">MSQTVLHIDASVGADASRSRAASQAEVAALTPDTVIRRDLVAEPLPYIDGIWADTRLKPAETLTDADKDVLALSDELVAELQAAETIVIGLPIYNFASPASLKAWMDLVARPKVTFHYTENGPEGLLKGKRAIVTVASGGVPVGSEMDFASRHLTHFLNFIGISDVTVLDVKELAAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S3R8</accession>
    <name>A0A1M5S3R8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Aconitase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_2818</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32593.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902117.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2818"/>
    <dbReference type="EnsemblBacteria" id="SHH32593">
        <property type="protein sequence ID" value="SHH32593"/>
        <property type="gene ID" value="SAMN05444003_2818"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003994">
        <property type="term" value="F:aconitate hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047780">
        <property type="term" value="F:citrate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.310">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.19.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.499.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1060.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015931">
        <property type="entry name" value="Acnase/IPM_dHydase_lsu_aba_1/3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001030">
        <property type="entry name" value="Acoase/IPM_deHydtase_lsu_aba"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015928">
        <property type="entry name" value="Aconitase/3IPM_dehydase_swvl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036008">
        <property type="entry name" value="Aconitase_4Fe-4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015933">
        <property type="entry name" value="Aconitase_B_HEAT-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036288">
        <property type="entry name" value="Aconitase_B_HEAT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015929">
        <property type="entry name" value="Aconitase_B_swivel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015932">
        <property type="entry name" value="Aconitase_dom2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00330">
        <property type="entry name" value="Aconitase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06434">
        <property type="entry name" value="Aconitase_2_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11791">
        <property type="entry name" value="Aconitase_B_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53732">
        <property type="entry name" value="SSF53732"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74778">
        <property type="entry name" value="SSF74778"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="7" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="Aconitase_B_N" evidence="10">
        <location>
            <begin position="6"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="domain" description="Aconitase_2_N" evidence="9">
        <location>
            <begin position="175"/>
            <end position="407"/>
        </location>
    </feature>
    <feature type="domain" description="Aconitase" evidence="8">
        <location>
            <begin position="412"/>
            <end position="895"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00330"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF06434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF11791"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH32593.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="930" mass="100949" checksum="3033186969C6E05A" modified="2017-03-15" version="1">MSLYTAYLEEIEARKEQGLNPKPIDDAALTKEIIDQIKDTANPHRSDSLNFFIYNTLPGTTSAAGEKAQFLKEIILGQSVVAEINAAYAFELLSHMKGGPSVEVLLDLALGDDLATAEQAAEVLKTQVFLYEADTDRLKGAHEAGNAIATDIIESYLAAEFFTKLPDVDEEVKVVTFVAAEGDISTDLLSPGNQAHSRADRELHGKCLIDEKAQKHIEELKLQHPDKRVMLIAEKGTMGVGSSRMSGVNNVALWTGKQASPYVPFVNIAPVVAGTNGISPIFLTTVGVTGGIGVDLKNWVKKVDEDGNPILNNDGNPILEQKYSVETGTVLTINTKDKKLYSEDGSEELVDMASSFTPQKMEFMKAGGSYAIVFGKKLQSFAAETLGKEAPQVFAPSKEISHEGQGLTAVEKIFNANARGVSSDAPLHAGSDVRVGVNIVGSQDTTGLMTMQELEAMAATVVSPSVDGAYQSGCHTASVWDVKAQANTPRLMKFMNDFGLVTGRDPKGVYHSMTDVIHKVLNDITVSDWDIIIGGDSHTRMSKGVAFGADSGTVALALATGEASMPIPQSVKVTFKGQMADHMDFRDVVHATQAQMLEQHSDNVFQGRVIEVHIGTLLADQAFTFTDWTAEMKAKASVCISNDETLIGSLELAKSRIQIMMDKGMEHDNGMLASLLAKADQRIAEIKSGERPALRPDENAKYFAEVVVDLDQIVEPMIADPDVNNVDVSKRYTHDTIRPISFYNAQKEVDLGFVGSCMVHKGDIKIVAQMLRNLEAANGKVEFKAPLVVTAPTYNIIEELKEEGDWEILQKYCGFEFDDTAPKQVARTEYENILYLERPGCNLCMGNQEKAAKGDTVLATSTRLFQGRVVADSETKKGESLLGSTPVVVLSAILGRTPTLEEYKEAVEGIDLTKFAPPKKTPLDALSVHY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S5G4</accession>
    <name>A0A1M5S5G4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Trypsin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2865</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33731.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH33731">
        <property type="protein sequence ID" value="SHH33731"/>
        <property type="gene ID" value="SAMN05444003_2865"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043504">
        <property type="entry name" value="Peptidase_S1_PA_chymotrypsin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001314">
        <property type="entry name" value="Peptidase_S1A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001254">
        <property type="entry name" value="Trypsin_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00089">
        <property type="entry name" value="Trypsin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00722">
        <property type="entry name" value="CHYMOTRYPSIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00020">
        <property type="entry name" value="Tryp_SPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="SSF50494"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50240">
        <property type="entry name" value="TRYPSIN_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012974356" evidence="1">
        <location>
            <begin position="21"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase S1" evidence="2">
        <location>
            <begin position="21"/>
            <end position="261"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH33731.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="270" mass="29071" checksum="8E2A7B923FCB44BB" modified="2017-03-15" version="1">MILRNLFYCIFLCWCSPAMAIINGIEAEVEDFRSYVSIRAESPFPSHEGKEINACGGTLIAPRWVLTANHCWPAYQAVSNGGEPVFVGVNIGTDGFFEQKIQIVDYILAPAKIGHERVDAALLELAEDATEHGAIVANIFDGNLTNGTETTTVGLGQGLEGEPLLYYESVVTESALCDSPRVDFDELHDFCVGIPESTQRAGYGDSGGPLFIQGGPSGTEYQVAGIVKGGVKANATGIEETENIRYTDANKLRDWISAVTGYDMSSDNSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SC18</accession>
    <name>A0A1M5SC18_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Carbohydrate ABC transporter substrate-binding protein, CUT1 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2888</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial solute-binding protein 1 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36019.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902266.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2888"/>
    <dbReference type="EnsemblBacteria" id="SHH36019">
        <property type="protein sequence ID" value="SHH36019"/>
        <property type="gene ID" value="SAMN05444003_2888"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006059">
        <property type="entry name" value="SBP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01547">
        <property type="entry name" value="SBP_bac_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0574">Periplasm</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013087445" evidence="4">
        <location>
            <begin position="26"/>
            <end position="449"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH36019.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="449" mass="47791" checksum="1A46451FB7D7415D" modified="2017-03-15" version="1">MKTLRLRHLSTAAMALALTATSVSAENLRFWTTEEQPERLAKQEEMAAAFAAASGHTVEVIPVSESDLGTRATAAFAAGDLPDVIYHTLQYALPWYEAGILDSDAATDVIEDLGADTFASGALDMAAVDGGYASVPVDGWTQMIVYRKDLFEAAGLEAPNSFANVEAALEALHNPPEIYGFVAATKVDENFMSQVLEHVFLANGVSPVDANGAADLDVAKTTEVLDFYKAIADASPDGELYWDQSRSLYFSGNAAMIIWSPFILDELAGLRDSAPPTINDDPTSGELASKTGIVTNFAGPSNPDGAAWGDVRYFGITSDASTDAAMEFVQYSMDEGYTQTLSIAPEGKFPVRRGNAEDPAAFTTAWSTLPVGVDRKAPLGDLYAQEMIDEIVGGLDVAQRWGVAEGQLALASKMINSQAINRIVREYIDGNIDAASAVAAMNEELGAIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SCG9</accession>
    <name>A0A1M5SCG9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized conserved protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2895</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the Gfa family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36165.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2895"/>
    <dbReference type="EnsemblBacteria" id="SHH36165">
        <property type="protein sequence ID" value="SHH36165"/>
        <property type="gene ID" value="SAMN05444003_2895"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016846">
        <property type="term" value="F:carbon-sulfur lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006913">
        <property type="entry name" value="CENP-V/GFA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011057">
        <property type="entry name" value="Mss4-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04828">
        <property type="entry name" value="GFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51316">
        <property type="entry name" value="SSF51316"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51891">
        <property type="entry name" value="CENP_V_GFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CENP-V/GFA" evidence="3">
        <location>
            <begin position="6"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005495"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51891"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH36165.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="134" mass="15007" checksum="145A979D0254BD28" modified="2017-03-15" version="1">MVEAGATGRCLCGAVRFEIKSGPKWTALCHCDSCRRAGAAAVVPWMGFAPDQVAWHGERKFYQSSEIAQRGFCPTCGTQMSFESTRWPGEIHLIATTLERPEDYEPQLHCHTAEHLPWLKIDDGLPKYERSAEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SDW1</accession>
    <name>A0A1M5SDW1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_2914</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36625.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902531.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2914"/>
    <dbReference type="EnsemblBacteria" id="SHH36625">
        <property type="protein sequence ID" value="SHH36625"/>
        <property type="gene ID" value="SAMN05444003_2914"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029151">
        <property type="entry name" value="Sensor-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017055">
        <property type="entry name" value="Sig_transdc_His_kinase_DctB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036431">
        <property type="entry name" value="STHK_DctB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103190">
        <property type="entry name" value="SSF103190"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="10" id="KW-0418">Kinase</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="285"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="9">
        <location>
            <begin position="374"/>
            <end position="586"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="7">
        <location>
            <begin position="317"/>
            <end position="365"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH36625.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="591" mass="64183" checksum="AA3BE6DDE036AE61" modified="2017-03-15" version="1">MELSRNRPALWIAGFLIFVIGFSAGVWRFAYGAALDQLARRGQADVALAADGLVGHLERYRELAVLLADHPTLRPVVERAEPSEDAASLLLDVADKTGSLDIMVIDQTGAEVVNARDTDPQVHASRPYFERAMDGALGTYHLFSDRYGKRAFYFAAPVFSDEGPPIGSILVAANVEAVEAAWRGDRPSLFFGDDLGVIFLSNRSELIFSSRGAGETFQSREAEYPPTLVSSFIDVQSAEVAGHEIWRVDGGPYLPERALHIELPVPVIGMRGEVLIDVAPANQLALLQASVAAALCLAFGALLYLATERRRTLAIANAKLETRVANRTADLERVNNDLRAEITTRREAEAQLKQAQADLVQAGKLSALGQMSAGISHELNQPLMAIRSFADNAQVFLHKDKPDIAEENLGRISDLARRMGRIIKNLRAFAKQESAPLVDVDIVAVIDAVTEISATKARDAETQIKWDRPEEPIWVRGGDVRLQQVLLNLVSNAIDAMEGHDERTVEISVDVANRVTVSVRDTGPGIEQPEKIFDPFYSTKSVGAAEGMGLGLSISYGLVQSFGGDIRGRNHEEGGAVFTVELDAARQADAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SJD4</accession>
    <name>A0A1M5SJD4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Malate dehydrogenase (Oxaloacetate-decarboxylating)(NADP+)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_2992</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">In the C-terminal section; belongs to the phosphate acetyltransferase and butyryltransferase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">In the N-terminal section; belongs to the malic enzymes family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38378.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902427.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2992"/>
    <dbReference type="EnsemblBacteria" id="SHH38378">
        <property type="protein sequence ID" value="SHH38378"/>
        <property type="gene ID" value="SAMN05444003_2992"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004471">
        <property type="term" value="F:malate dehydrogenase (decarboxylating) (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006108">
        <property type="term" value="P:malate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05311">
        <property type="entry name" value="NAD_bind_2_malic_enz"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10380">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10750">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10950">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046346">
        <property type="entry name" value="Aminiacid_DH-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012301">
        <property type="entry name" value="Malic_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037062">
        <property type="entry name" value="Malic_N_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012302">
        <property type="entry name" value="Malic_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045213">
        <property type="entry name" value="Malic_NAD-bd_bact_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012188">
        <property type="entry name" value="ME_PTA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042113">
        <property type="entry name" value="P_AcTrfase_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042112">
        <property type="entry name" value="P_AcTrfase_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002505">
        <property type="entry name" value="PTA_PTB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00390">
        <property type="entry name" value="malic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03949">
        <property type="entry name" value="Malic_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01515">
        <property type="entry name" value="PTA_PTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036684">
        <property type="entry name" value="ME_PTA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01274">
        <property type="entry name" value="malic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00919">
        <property type="entry name" value="Malic_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53223">
        <property type="entry name" value="SSF53223"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="8" id="KW-0521">NADP</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="malic" evidence="10">
        <location>
            <begin position="22"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="domain" description="Malic_M" evidence="9">
        <location>
            <begin position="167"/>
            <end position="404"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="6">
        <location>
            <position position="98"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="80"/>
            <end position="87"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="140"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="141"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="166"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="291"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007686"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008756"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR036684-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR036684-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR036684-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM00919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM01274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH38378.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="759" mass="81599" checksum="9947750F4D4E8456" modified="2017-03-15" version="1">MTRSKPTDLRAAALSYHQTPKPGKLEIRATKPMANGRDLSLAYSPGVAEACLEIKDDPATARDFTARGNLVAVVSNGSAVLGLGNIGGLASKPVMEGKAVLFKKFANIDCFDIELNEPDPEKLADIVCALEPTFGAINLEDIKAPDCFIVEKLCRERMNIPVFHDDQHGTAIVVSAAATNALRLAKKRFEDIKIVSTGGGAAGIACLNMLLKMGVKRENVWLVDIEGLVYEGREADMTPQKACYAQGTTYATLDEVIEGADLFLGLSGPGVLTPDMVKKMADSPIIFALANPNPEIDPAAAKEANPKAIIATGRSDVPNQVNNVLCFPFIFRGALDVGATDINDAMKIACVEGIAALARETTSAEAAAAYRGEQLTFGPDYLIPKPFDPRLMGVVATAVAKAAMETGIATRPLEDIAAYKQSLDGSVFKSALLMRPVFDAAKSARRRIVFAEGESERVLRASQAVIEETTDQPILIGRPEVIETRCERAGLKIRPGVDFQIVNPENDPRYRDYWGTYHEIMARKGVTPDLAKAIMRTNTTAIGAVMVHRDEADSLICGTFGQYLWHLNYVEQILGTEKLQPIAALSMMILEDGPLFIADTQVHAEPMPEQIAETAIGAARHARRFGITPNIALCSHSQFGNLNSDTGCRMRAAMAILDSTPRDFAYEGEMHIDTALDPELRARIFPAAHLQGPANILIFANTDAASGVRNILKMKGDALEVGPILMGMGNRAHVVTPSITARGLLNVSALAGTPVAHYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SLE9</accession>
    <name>A0A1M5SLE9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">UDP-N-acetylglucosamine 1-carboxyvinyltransferase</fullName>
            <ecNumber evidence="7">2.5.1.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Enoylpyruvate transferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">UDP-N-acetylglucosamine enolpyruvyl transferase</fullName>
            <shortName evidence="7">EPT</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">murA</name>
        <name evidence="9" type="ORF">SAMN05444003_3033</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Cell wall formation. Adds enolpyruvyl to UDP-N-acetylglucosamine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>phosphoenolpyruvate + UDP-N-acetyl-alpha-D-glucosamine = phosphate + UDP-N-acetyl-3-O-(1-carboxyvinyl)-alpha-D-glucosamine</text>
            <dbReference type="Rhea" id="RHEA:18681"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="ChEBI" id="CHEBI:68483"/>
            <dbReference type="EC" id="2.5.1.7"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the EPSP synthase family. MurA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.7" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH39285.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902562.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3033"/>
    <dbReference type="EnsemblBacteria" id="SHH39285">
        <property type="protein sequence ID" value="SHH39285"/>
        <property type="gene ID" value="SAMN05444003_3033"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008760">
        <property type="term" value="F:UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019277">
        <property type="term" value="P:UDP-N-acetylgalactosamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01555">
        <property type="entry name" value="UdpNAET"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.65.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00111">
        <property type="entry name" value="MurA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001986">
        <property type="entry name" value="Enolpyruvate_Tfrase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036968">
        <property type="entry name" value="Enolpyruvate_Tfrase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013792">
        <property type="entry name" value="RNA3'P_cycl/enolpyr_Trfase_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005750">
        <property type="entry name" value="UDP_GlcNAc_COvinyl_MurA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00275">
        <property type="entry name" value="EPSP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55205">
        <property type="entry name" value="SSF55205"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01072">
        <property type="entry name" value="murA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="1 7" id="KW-0132">Cell division</keyword>
    <keyword evidence="3 7" id="KW-0133">Cell shape</keyword>
    <keyword evidence="6 7" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 7" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="7" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 7 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="EPSP_synthase" evidence="8">
        <location>
            <begin position="7"/>
            <end position="409"/>
        </location>
    </feature>
    <feature type="region of interest" description="Phosphoenolpyruvate binding" evidence="7">
        <location>
            <begin position="22"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="7">
        <location>
            <position position="118"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="94"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="308"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="330"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="2-(S-cysteinyl)pyruvic acid O-phosphothioketal" evidence="7">
        <location>
            <position position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00275"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH39285.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="421" mass="44292" checksum="DB4F460D889C541C" modified="2017-03-15" version="1">MDSIVVKGGGPLDGRIQIAGAKNTSLKLIAASILTEEPVTLTNVPNLADIRTISDVMESLGVEIARLEGGRVMVLSAASLTSHTAEYDLVRKLRASFQVLGPLLARTGEAIVSLPGGCAIGARPVDIHLDALEQMGAKVELRDGYVHASAPQGLKGCEINFRFASVGATENAMAAATLAKGTTIIRNAAREPDTVALAECLNAMGAQIEGAGTSTLTITGVDRLHGVTQEVLTDRIELGTFMVAPMIAGGSVELLGGRLDLIPCFADKMIEAGAIIEETKDGLKVSRGDGPIKPVDAKTEPFPGFPTDLQAQFMAMMCLSNGTSVLEETIFENRFMHAPELLRMGANVEVQGGVAKVHGVEKMKGAPVMATDLRASVSLILAGLAAEGETVVNRVYHLDRGYEHVERKLSAVGAQIERMSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SRM3</accession>
    <name>A0A1M5SRM3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">SnoaL-like polyketide cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3054</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH40978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902581.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3054"/>
    <dbReference type="EnsemblBacteria" id="SHH40978">
        <property type="protein sequence ID" value="SHH40978"/>
        <property type="gene ID" value="SAMN05444003_3054"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030638">
        <property type="term" value="P:polyketide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009959">
        <property type="entry name" value="Cyclase_SnoaL-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38436">
        <property type="entry name" value="PTHR38436"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07366">
        <property type="entry name" value="SnoaL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH40978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="350" mass="39675" checksum="204E70FE7D539330" modified="2017-03-15" version="1">MSCVHTENKEALKKLHAAMTDFEEASVRSALRNLIAPDALIHMPHPLGDLTGPDELYDICYAPLFKSMPDLERRDWILMGGQTEHGGNWIGCGGHYMGTFVVPYLDIPPTGHLAHMRFHEFYKFEEGRVVEIQTLWDIPELMMQAGAWPMAPSLGLEFHIPGPATLDGFVPGPWDKERSEASCRHIVDMLDHLKLHPSTGGPEVMDMPRFWHPRMNWYGPAGIGTGRGISGFRNWHQIPFLNGMPDRGLYVDEITYHFFGDNDYVAVTGWPDMIQTVTHDGWMGIAPSGKKITMCSLDFWRIENGKIRENWVMVDILDAYRQLDVDVLARMREFNKARVSGSIPFPVGDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SV60</accession>
    <name>A0A1M5SV60_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3133</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902695.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3133"/>
    <dbReference type="EnsemblBacteria" id="SHH42377">
        <property type="protein sequence ID" value="SHH42377"/>
        <property type="gene ID" value="SAMN05444003_3133"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024409">
        <property type="entry name" value="DUF3833"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12915">
        <property type="entry name" value="DUF3833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH42377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="177" mass="19917" checksum="0B421F49724338A7" modified="2017-03-15" version="1">MRLILAFVGLTLAACTGKPSFDDPTLSDRKLNLEEFFVGELVAYGQFQDILGTVRRSFVVTINGNWDGETLTLVEDFVYEDGATEQRIWSLVKTGPDSWQGTAPGVIGVATGVEQDNRFNWQYEIDLPVPSADGTVETIRVVFDDWMWLLSGDRLLNRAYVKRFGADIGDVVIWFER</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SX27</accession>
    <name>A0A1M5SX27_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 6">30S ribosomal protein S14</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rpsN</name>
        <name evidence="7" type="ORF">SAMN05444003_3171</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 6">Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Part of the 30S ribosomal subunit. Contacts proteins S3 and S10.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the universal ribosomal protein uS14 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH43079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902757.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3171"/>
    <dbReference type="EnsemblBacteria" id="SHH43079">
        <property type="protein sequence ID" value="SHH43079"/>
        <property type="gene ID" value="SAMN05444003_3171"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00537">
        <property type="entry name" value="Ribosomal_S14_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001209">
        <property type="entry name" value="Ribosomal_S14"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023036">
        <property type="entry name" value="Ribosomal_S14_bac/plastid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018271">
        <property type="entry name" value="Ribosomal_S14_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19836">
        <property type="entry name" value="PTHR19836"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00253">
        <property type="entry name" value="Ribosomal_S14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00527">
        <property type="entry name" value="RIBOSOMAL_S14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 6 7" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="6" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003686"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009083"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00015704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00537"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH43079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="101" mass="11647" checksum="0DB0D4E3D1A44003" modified="2017-03-15" version="1">MAKKSMIEREKKRERLVAQYAEKRAALKAIINNQEIPVEERFKASLELAKLPRNSSATRLHNRCQLTGRPHAYYRKLKISRIALRDLGSNGEIPGMVKSSW</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L0F4</accession>
    <name>A0A1M5L0F4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Histidinol-phosphate aminotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0023</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 2">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58400.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898347.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0023"/>
    <dbReference type="EnsemblBacteria" id="SHG58400">
        <property type="protein sequence ID" value="SHG58400"/>
        <property type="gene ID" value="SAMN05444003_0023"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001917">
        <property type="entry name" value="Aminotrans_II_pyridoxalP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00599">
        <property type="entry name" value="AA_TRANSFER_CLASS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="3">
        <location>
            <begin position="38"/>
            <end position="359"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003693"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG58400.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="370" mass="39619" checksum="006E7025EC7705D5" modified="2017-03-15" version="1">MTNDPRLTNLAATLPATVPFVGPEAQERARSAPFEARLGANESVFGPSPRAIEAMQKAAADVWMYADPENHDLRQALADHHGISADHIMIDAGIDTLLGVLVRLLITSGDHVVTSAGAYPTFNYHVAGFGGTLHQVPYKGDFEDPDALISKADEVGAKLIYFANPDNPMGSQHKAATIEKMIENVPDGCLLILDEAYIEMAPEGSAPTVAETGTRVIRMRTFSKGYGMAGARVGYAIGAVDLITAFNKVRNHFGMCRISQAGALAALKDQDWLNQVQENVQVARAWITQIAAENGLTALPSSTNFVTIDCGRDGAFAKRVLGHLIEAGIFVRMPFVAPQDRCIRVSCGTSIDLDAFAAALPTALERAKSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L0Z2</accession>
    <name>A0A1M5L0Z2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0040</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58772.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898371.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0040"/>
    <dbReference type="EnsemblBacteria" id="SHG58772">
        <property type="protein sequence ID" value="SHG58772"/>
        <property type="gene ID" value="SAMN05444003_0040"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG58772.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="140" mass="16361" checksum="20567D0DFF156D67" modified="2017-03-15" version="1">MSTELPDYYFRTRENGAIVFRVDTENRQRRIEMDQIAVVNVNKGEVKPHGDHELSEADLSAIQSWLDERVPLLARRTIDDIHRTVDHLNATTQWVQSKAENDELDEITDSLLLAMHDLRSVLVRKKADRVLKREDRKDDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L4E1</accession>
    <name>A0A1M5L4E1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glyoxylase, beta-lactamase superfamily II</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0065</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59283.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898404.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG59283">
        <property type="protein sequence ID" value="SHG59283"/>
        <property type="gene ID" value="SAMN05444003_0065"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012319065" evidence="1">
        <location>
            <begin position="28"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="domain" description="Lactamase_B" evidence="2">
        <location>
            <begin position="92"/>
            <end position="278"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG59283.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="304" mass="32009" checksum="C9B95F3C7A2FD4BF" modified="2017-03-15" version="1">MSISRRQALLAGSALPLAAALPTSAAADGHASAAPKPLHSDFSLGDFRVTTLLVGSRPVDNPNGIFGLNVDAETFASVSEENFIPSDSVQFFFTPTVVNTGSEVILFDAGLNAEGTTNALAAAGYSADDITHLVITHMHGDHIGGLTDDGGNETFANASYIANQQEFDHWAGADNGAFEGKVRPLADKLNFIGDGGAVASGVTGMAAFGHTPGHMVYMLESGGEQLMIIGDLANHPVYSLAYPDWEVRFDIDKAAAAASRRNILGMLAAERMPMIGYHMPAPGLGYVAPRDDGFRYVPHSYQLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L501</accession>
    <name>A0A1M5L501_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0111</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60194.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG60194">
        <property type="protein sequence ID" value="SHG60194"/>
        <property type="gene ID" value="SAMN05444003_0111"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007497">
        <property type="entry name" value="DUF541"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04402">
        <property type="entry name" value="SIMPL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013087338" evidence="1">
        <location>
            <begin position="22"/>
            <end position="227"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG60194.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="227" mass="23228" checksum="DA2B9CEFBEFB9413" modified="2017-03-15" version="1">MRSILATIGLITMLSTTSAAAEGGTITVSGTGNVSVVPDMANITLGVFNTAATAQEAVSGMSDSIGAVIDGLLEAGIDETDIQTSSLRVNPIQDYNADSDRSRITGYSAQSMVTVRVTEIDELGVILDQVLSNGANQLNGLQFDVADREPHLNAARERAVADAMAKAQIYTNAAGVSLGGIVSMSESGGRVAPVAMEMSNARASGVPVAAGDISISANVTMTYAIED</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L6T3</accession>
    <name>A0A1M5L6T3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Imidazole glycerol phosphate synthase subunit HisH</fullName>
            <ecNumber evidence="9">4.3.2.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">IGP synthase glutaminase subunit</fullName>
            <ecNumber evidence="9">3.5.1.2</ecNumber>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">IGP synthase subunit HisH</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">ImGP synthase subunit HisH</fullName>
            <shortName evidence="9">IGPS subunit HisH</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">hisH</name>
        <name evidence="12" type="ORF">SAMN05444003_0132</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>5-[(5-phospho-1-deoxy-D-ribulos-1-ylimino)methylamino]-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide + L-glutamine = 5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide + D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate + H(+) + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:24793"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58278"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:58475"/>
            <dbReference type="ChEBI" id="CHEBI:58525"/>
            <dbReference type="EC" id="4.3.2.10"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 9">
            <text>H2O + L-glutamine = L-glutamate + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:15889"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="EC" id="3.5.1.2"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 9">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 5/9.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4 9">Heterodimer of HisH and HisF.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EC" id="4.3.2.10" evidence="9"/>
    <dbReference type="EC" id="3.5.1.2" evidence="9"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60670.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898491.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0132"/>
    <dbReference type="EnsemblBacteria" id="SHG60670">
        <property type="protein sequence ID" value="SHG60670"/>
        <property type="gene ID" value="SAMN05444003_0132"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00010"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004359">
        <property type="term" value="F:glutaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000107">
        <property type="term" value="F:imidazoleglycerol-phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01748">
        <property type="entry name" value="GATase1_IGP_Synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00278">
        <property type="entry name" value="HisH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017926">
        <property type="entry name" value="GATASE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010139">
        <property type="entry name" value="Imidazole-glycPsynth_HisH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42701">
        <property type="entry name" value="PTHR42701"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00117">
        <property type="entry name" value="GATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000495">
        <property type="entry name" value="Amidotransf_hisH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01855">
        <property type="entry name" value="IMP_synth_hisH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 9" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 12" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="7 9" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="6 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8 9" id="KW-0456">Lyase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GATase" evidence="11">
        <location>
            <begin position="5"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="9 10">
        <location>
            <position position="87"/>
        </location>
    </feature>
    <feature type="active site" evidence="9 10">
        <location>
            <position position="192"/>
        </location>
    </feature>
    <feature type="active site" evidence="9 10">
        <location>
            <position position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000619"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR000495-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG60670.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="212" mass="23126" checksum="F64AF830D1B6E095" modified="2017-03-15" version="1">MTTVLIDYDSGNLHSAQKAFERMAKEVDGGEIVVTSDADVVSRADRVVLPGDGAFPHCRDELFARSDLAEAMIEAVKTRGVPFMGICVGMQMLATTGHEYQETPGLDWIAGDIHRIAPNDPSLKIPHMGWNNLVLNGLHPVLEGVSTGDHAYFVHSYAMQVSDPKDLLAHVDYGDDVTAIVAKDNVIGMQFHPEKSQTAGLRMIGNFLQWAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L702</accession>
    <name>A0A1M5L702_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0135</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60736.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898494.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG60736">
        <property type="protein sequence ID" value="SHG60736"/>
        <property type="gene ID" value="SAMN05444003_0135"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009911932" evidence="1">
        <location>
            <begin position="22"/>
            <end position="249"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG60736.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="249" mass="25156" checksum="E8DB544CD59B19FC" modified="2017-03-15" version="1">MKHQINLIVSLAASVALSACGGSGTGSNSGSIVRQLVPNGLNDTSVTRTIEVSVFGATGTQTGQFTPSEEELVLGSARISVAEPSVNLGLGSVTVLDGDRFIFLPVPDGTPTPTGAVNYFGQGLLVVSEADTGTVFEGIADTNVSVRFGGASSGFISFSNFEGQRQVGALAPASTAGQRLTIQGISARANGLNGGTSITDNTFSDTDFSSGDFDITGAFAGDDFEEVGGLVNIVANDGSTVRSSFGAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L7T2</accession>
    <name>A0A1M5L7T2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 8">Pyruvate carboxylase</fullName>
            <ecNumber evidence="3 8">6.4.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">SAMN05444003_0151</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>ATP + hydrogencarbonate + pyruvate = ADP + H(+) + oxaloacetate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:20844"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16452"/>
            <dbReference type="ChEBI" id="CHEBI:17544"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.4.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 8">
            <name>biotin</name>
            <dbReference type="ChEBI" id="CHEBI:57586"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2">Carbohydrate biosynthesis; gluconeogenesis.</text>
    </comment>
    <dbReference type="EC" id="6.4.1.1" evidence="3 8"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61071.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900334.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0151"/>
    <dbReference type="EnsemblBacteria" id="SHG61071">
        <property type="protein sequence ID" value="SHG61071"/>
        <property type="gene ID" value="SAMN05444003_0151"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00138"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004736">
        <property type="term" value="F:pyruvate carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006094">
        <property type="term" value="P:gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006090">
        <property type="term" value="P:pyruvate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005481">
        <property type="entry name" value="BC-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001882">
        <property type="entry name" value="Biotin_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011764">
        <property type="entry name" value="Biotin_carboxylation_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005482">
        <property type="entry name" value="Biotin_COase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000089">
        <property type="entry name" value="Biotin_lipoyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003379">
        <property type="entry name" value="Carboxylase_cons_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005479">
        <property type="entry name" value="CbamoylP_synth_lsu-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000891">
        <property type="entry name" value="PYR_CT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005930">
        <property type="entry name" value="Pyruv_COase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011054">
        <property type="entry name" value="Rudment_hybrid_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011053">
        <property type="entry name" value="Single_hybrid_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02785">
        <property type="entry name" value="Biotin_carb_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00289">
        <property type="entry name" value="Biotin_carb_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00364">
        <property type="entry name" value="Biotin_lipoyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02786">
        <property type="entry name" value="CPSase_L_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00682">
        <property type="entry name" value="HMGL-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02436">
        <property type="entry name" value="PYC_OADA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001594">
        <property type="entry name" value="Pyruv_carbox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00878">
        <property type="entry name" value="Biotin_carb_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51230">
        <property type="entry name" value="SSF51230"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51246">
        <property type="entry name" value="SSF51246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01235">
        <property type="entry name" value="pyruv_carbox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50979">
        <property type="entry name" value="BC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00188">
        <property type="entry name" value="BIOTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50968">
        <property type="entry name" value="BIOTINYL_LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00866">
        <property type="entry name" value="CPSASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00867">
        <property type="entry name" value="CPSASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50991">
        <property type="entry name" value="PYR_CT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6 8 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7 8" id="KW-0092">Biotin</keyword>
    <keyword evidence="4 8" id="KW-0436">Ligase</keyword>
    <keyword evidence="11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 8 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="17" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Biotin carboxylation" evidence="15">
        <location>
            <begin position="3"/>
            <end position="456"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-grasp" evidence="14">
        <location>
            <begin position="123"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="domain" description="Pyruvate carboxyltransferase" evidence="16">
        <location>
            <begin position="534"/>
            <end position="802"/>
        </location>
    </feature>
    <feature type="domain" description="Lipoyl-binding" evidence="13">
        <location>
            <begin position="1072"/>
            <end position="1147"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="481"/>
            <end position="508"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="296"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="119"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="203"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="543"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="615"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" description="via carbamate group" evidence="11">
        <location>
            <position position="712"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="741"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="743"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="876"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004742"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013057"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023267"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRNR" id="PIRNR001594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR001594-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR001594-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR001594-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS50979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS50991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="SHG61071.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="1147" mass="126210" checksum="641785882A41CF0D" modified="2017-03-15" version="1">MKDFEKILIANRGEIAIRIMRAANEMGKKTVAVFAEEDKLGLHRFKADEAYRIGEDLGPVAAYLSIDEIIRVAKMSGADAIHPGYGLLSENPDFVDACETNGITFIGPKAKTMRQLGDKASARRVAIEAGVPVIPATEVLGDDMVAIKKEAAEIGYPLMLKASWGGGGRGMRPIESEDELEERVLEGRREAEAAFGNGEGYLEKMIIRARHVEVQILGDQHGKIYHLWERDCSVQRRNQKVVERAPAPYLSDTQREQLCNLGKKICAHVNYECAGTVEFLMDMDSGEFYFIEVNPRVQVEHTVTEEVTGIDIVRAQILIAEGKHLATATGCASQYDVKLDGHALQCRVTTEDPRNNFIPDYGRIQTYRSATGPGVRLDGGTAYSGAVITRYYDSLLTKVTARAPTPEQAIARMDRALREFRIRGVSTNIAFVENLLKHPVFLSNEYTTKFIDTTPDLFDFKKRRDRATKILTYIADITVNGHPETTDRPRPAADVKPPKPPVKPTIDVPSGTRTILDASGPQAVADWMKDQSQLLITDTTMRDGHQSLLATRMRSIDMINAAPAYATKMNQLFSVECWGGATFDVAYRFLQECPWQRLRDIREKMPNIMTQMLLRASNGVGYTNYPDNVVQAFVKQAATSGVDVFRVFDSLNWVENMRVAMDAVVEADKVCEGTICYTGDLLDPARSKYDLKYYVGMAKELEAAGAHVLGLKDMAGLLKPAAATALVKALQEETDLPIHFHTHDTSGAAIATVLAAANAGVDCVDAAMDALSGNTSQPTLGSIVEAMRGTERDTGLDIGAIRDISNYFEQVRAHYAAFESGLQAPASEVYLHEMPGGQFTNLKAQARSLGLEERWHEVAQTYADVNQMFGDIVKVTPSSKVVGDMALMMVSQNLTRDDVENPKTEVVFPDSVVDMMRGSLGQPPGGWPKDIQKKVLKGEKASTERPGAALKPVDLEATRKDLSEQLDGMDIDDEDLNGYLMYPKVFLDYMGRHKTYGPVRTLPTQAFFYGMKPGEEIVAEIDPGKTLEIRMQAVSEVNEDGEVKVFFELNGQPRTVRVMNRLVEAKKVSRPKAEDGNSNHIGAPMPGVVATVAAQAGVEVKEGDLLLTIEAMKMETGIHAERDAVVKAVHVSAGGQIDAKDLLVEFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L921</accession>
    <name>A0A1M5L921_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0173</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61592.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0173"/>
    <dbReference type="EnsemblBacteria" id="SHG61592">
        <property type="protein sequence ID" value="SHG61592"/>
        <property type="gene ID" value="SAMN05444003_0173"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.260">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004792">
        <property type="entry name" value="BaiN-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023166">
        <property type="entry name" value="HI0933-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42887">
        <property type="entry name" value="PTHR42887"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00275">
        <property type="entry name" value="TIGR00275"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012748043" evidence="1">
        <location>
            <begin position="34"/>
            <end position="404"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG61592.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="404" mass="43726" checksum="4B398D3B429F4445" modified="2017-03-15" version="1">MPSRTNQDKWDLMFVNTLILGAGAAGMMAAAHAGPNTLVIDHAKLPGEKIRISGGGRCNFTNLYAGPENFLSQNPHFAKSALSRYTQWDFIDLVVQHGIPYHEKTLGQLFCDTSAKDIIALLQAEMAKVGATLWLKTDITDIRKTDAFEVLAAKDGEPITIRANNLIVATGGKSIPKMGATGLAYSIAEQFGLNIITPRPGLVPLTFTDDRFKPLAGTALPSTVTAGATTFEEATLFTHRGLSGPAILQASSYWREGEPIEINCASQTDIFDYLKSRKTTEGRKDISTVLAQVIPQRLASYLAEAWTLDGNLADWSDARLIDLAQDLHHWTLTPSGSEGYRTAEVTLGGVDTADLNSKTMEAKSVPGLYFVGEAVDVTGWLGGYNFQWAWSSGWVAGQANKAKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LH81</accession>
    <name>A0A1M5LH81_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, MerR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0292</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64492.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG64492">
        <property type="protein sequence ID" value="SHG64492"/>
        <property type="gene ID" value="SAMN05444003_0292"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000551">
        <property type="entry name" value="MerR-type_HTH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13411">
        <property type="entry name" value="MerR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00422">
        <property type="entry name" value="HTH_MERR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50937">
        <property type="entry name" value="HTH_MERR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH merR-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG64492.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="122" mass="13995" checksum="049B8AB5A382EA85" modified="2017-03-15" version="1">MRIDEVSEKSGLTPDTIRFYEKSDMLPAIARDQRGWRQFAPDDLEWLIVLARLRATGMPLKAVREFAASAQSAESETSTEQRKRLDLLRSHAETLSQRRAELEACEDYLNFKISTYTSKLGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LKE5</accession>
    <name>A0A1M5LKE5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 13">5-aminolevulinate synthase</fullName>
            <ecNumber evidence="6 13">2.3.1.37</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9 13">5-aminolevulinic acid synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10 13">Delta-ALA synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11 13">Delta-aminolevulinate synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">SAMN05444003_0327</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 13">
            <text>glycine + H(+) + succinyl-CoA = 5-aminolevulinate + CO2 + CoA</text>
            <dbReference type="Rhea" id="RHEA:12921"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57292"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:356416"/>
            <dbReference type="EC" id="2.3.1.37"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 12">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3 13">Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; 5-aminolevulinate from glycine: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 12">Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.37" evidence="6 13"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65159.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898770.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0327"/>
    <dbReference type="EnsemblBacteria" id="SHG65159">
        <property type="protein sequence ID" value="SHG65159"/>
        <property type="gene ID" value="SAMN05444003_0327"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00251">
        <property type="reaction ID" value="UER00375"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003870">
        <property type="term" value="F:5-aminolevulinate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006782">
        <property type="term" value="P:protoporphyrinogen IX biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010961">
        <property type="entry name" value="4pyrrol_synth_NH2levulA_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001917">
        <property type="entry name" value="Aminotrans_II_pyridoxalP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01821">
        <property type="entry name" value="5aminolev_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00599">
        <property type="entry name" value="AA_TRANSFER_CLASS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 13" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="7 13" id="KW-0350">Heme biosynthesis</keyword>
    <keyword evidence="12" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="13" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="14">
        <location>
            <begin position="47"/>
            <end position="391"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001588"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00008392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00013257"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00031691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00031945"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00032773"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU003693"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU910713"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="SHG65159.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="407" mass="44217" checksum="66C0B13D871674C0" modified="2017-03-15" version="1">MNYDAHLDQALNRLHEEGRYRTFIDIERTKGQYPHAVWRKPDGSEAPVTVWCGNDYLGMGQHPVVLEAMHEAIDATGAGSGGTRNISGTTVYHNRLEACLADLHQKESALLFTSAYIANDATLSTLPKLFPGLIIYSDALNHASMIEGVRRNGGAKRIFRHNDLDHLRELMAADDPDAPKLIAFESIYSMDGDIAPISELCDLADEFGALTYLDEVHAVGMYGPRGGGIAERDGVMDRIDIINGTLAKAYGVMGGYIAASAKMCDAIRSYAPGFIFTTSIPPAVAAGACASVEFLKTDQELRAKHQTQASILKLRLKGLGLPIVDHGTHIVPVIVGDPIHTKKLSDMLLSEYGIYVQPINFPTVPRGTERLRFTPSPVHGPSEMDALVSALDNLWSHCALNRAELAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LNK2</accession>
    <name>A0A1M5LNK2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">Ferric uptake regulation protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">fur</name>
        <name evidence="6" type="ORF">SAMN05444003_0396</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Acts as a global negative controlling element, employing Fe(2+) as a cofactor to bind the operator of the repressed genes.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the Fur family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66657.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898872.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0396"/>
    <dbReference type="EnsemblBacteria" id="SHG66657">
        <property type="protein sequence ID" value="SHG66657"/>
        <property type="gene ID" value="SAMN05444003_0396"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd07153">
        <property type="entry name" value="Fur_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002481">
        <property type="entry name" value="FUR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043135">
        <property type="entry name" value="Fur_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33202">
        <property type="entry name" value="PTHR33202"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01475">
        <property type="entry name" value="FUR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0678">Repressor</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="5" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="4 5" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002997"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007957"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00020910"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU364037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG66657.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="139" mass="15724" checksum="02972DBC7B19FE42" modified="2017-03-15" version="1">MTNTILARCEAQGLRMTGQRRTIALVLEASDDHPDVEELYKRASAQDDGISLATVYRTVKLFEETGILEKHEFGDGRARYETADGDHHDHLIDVHSGDVIEFVDEEIEALQEKIAQKLGYKLMGHRLELYGVPLKKTDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LNU3</accession>
    <name>A0A1M5LNU3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Trans-2,3-dihydro-3-hydroxyanthranilate isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0397</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PhzF family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66685.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898874.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0397"/>
    <dbReference type="EnsemblBacteria" id="SHG66685">
        <property type="protein sequence ID" value="SHG66685"/>
        <property type="gene ID" value="SAMN05444003_0397"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003719">
        <property type="entry name" value="Phenazine_PhzF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13774">
        <property type="entry name" value="PTHR13774"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02567">
        <property type="entry name" value="PhzC-PhzF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF016184">
        <property type="entry name" value="PhzC_PhzF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00654">
        <property type="entry name" value="PhzF_family"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" evidence="2">
        <location>
            <position position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR016184-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG66685.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="282" mass="29948" checksum="B730F5B51D5E4FA0" modified="2017-03-15" version="1">MTNYLVYDVFTDTTFAGNPLAVIPDARALPEDSLQRIAREFNFSETTFVYPPVDQAHTAKVRIFTPTMEIPFAGHPTIGTAIALRDMGHQGDMVLELGVGPIPCRFDGDQASFTTHLPLEVAAEPEIELVARCLGLSTDAIATSTHLPVQASVGLHFTMVEVTDRVTLAACAPAIDAIREGKERYPTGLDFAIFAYVRNGTAVDARMFAPLDNIPEDPATGSACAALAALLHDRLGGPLDLDIRQGEDMGRLSLISAAADGDPVGITIGGQAVKTMSGVLTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LRI1</accession>
    <name>A0A1M5LRI1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PIN domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0442</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67734.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898942.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0442"/>
    <dbReference type="EnsemblBacteria" id="SHG67734">
        <property type="protein sequence ID" value="SHG67734"/>
        <property type="gene ID" value="SAMN05444003_0442"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002716">
        <property type="entry name" value="PIN_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13470">
        <property type="entry name" value="PIN_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="SSF88723"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PINc" evidence="1">
        <location>
            <begin position="2"/>
            <end position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG67734.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="179" mass="19632" checksum="5472FA943675B34B" modified="2017-03-15" version="1">MRVLLDACVLYPTVMREVVLGCAKAGLFEVRWSERILEEWARATVKLGPEAEVFARGEIAVLGAQFPDAIVPVHEGLEQRLWLPDPNDVHVLASAVAGSCDAIMTVNAKDFPRNVLAEEGVSRVDPDNFLIGFFAVHEPVVQGVCDQVLVQARVMSGDDLTMRKLMKKARLPRLGKALG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LUY5</accession>
    <name>A0A1M5LUY5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Condensin subunit ScpB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0489</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68815.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899015.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0489"/>
    <dbReference type="EnsemblBacteria" id="SHG68815">
        <property type="protein sequence ID" value="SHG68815"/>
        <property type="gene ID" value="SAMN05444003_0489"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051304">
        <property type="term" value="P:chromosome separation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005234">
        <property type="entry name" value="ScpB_csome_segregation"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34298">
        <property type="entry name" value="PTHR34298"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04079">
        <property type="entry name" value="SMC_ScpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00281">
        <property type="entry name" value="TIGR00281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="1" id="KW-0132">Cell division</keyword>
    <keyword evidence="2" id="KW-0159">Chromosome partition</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="188"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="4">
        <location>
            <begin position="195"/>
            <end position="216"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG68815.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="216" mass="24250" checksum="15B8EC304F731239" modified="2017-03-15" version="1">MSDTQEESLFEAPPMGEQERMVEAILFASAEPVTVKELMGRMPHGSDPAEALQYLRKRYDGRGVQVVRVGDAWAIRTAGDLGFLMQKETVEVRKLSRAAVETLAIVAYHQPVTRAEIEEIRGVSVSRGTVDQLIELEWIRFGRRRMTPGRPVTFVVTQDFLDHFGLENARDLPGLKELRAAGLLENRPLPGATLDIDDEEDDDTPDMFTPSPEEEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LW94</accession>
    <name>A0A1M5LW94_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Peptide-methionine (R)-S-oxide reductase</fullName>
            <ecNumber evidence="2">1.8.4.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0516</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>[thioredoxin]-disulfide + H2O + L-methionyl-[protein] = [thioredoxin]-dithiol + L-methionyl-(R)-S-oxide-[protein]</text>
            <dbReference type="Rhea" id="RHEA:24164"/>
            <dbReference type="Rhea" id="RHEA-COMP:10698"/>
            <dbReference type="Rhea" id="RHEA-COMP:10700"/>
            <dbReference type="Rhea" id="RHEA-COMP:12313"/>
            <dbReference type="Rhea" id="RHEA-COMP:12314"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16044"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:45764"/>
            <dbReference type="ChEBI" id="CHEBI:50058"/>
            <dbReference type="EC" id="1.8.4.12"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="1.8.4.12" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69392.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899040.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0516"/>
    <dbReference type="EnsemblBacteria" id="SHG69392">
        <property type="protein sequence ID" value="SHG69392"/>
        <property type="gene ID" value="SAMN05444003_0516"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033743">
        <property type="term" value="F:peptide-methionine (R)-S-oxide reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002579">
        <property type="entry name" value="Met_Sox_Rdtase_MsrB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011057">
        <property type="entry name" value="Mss4-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01641">
        <property type="entry name" value="SelR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51316">
        <property type="entry name" value="SSF51316"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00357">
        <property type="entry name" value="TIGR00357"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51790">
        <property type="entry name" value="MSRB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MsrB" evidence="4">
        <location>
            <begin position="8"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012499"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51790"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG69392.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="130" mass="14564" checksum="AB185671F24621CB" modified="2017-03-15" version="1">MDKVVKSDAEWKAQLSDLAYKVLRKHGTERAGTNDNFPKDPGTFRCAGCDAPLFDQETKFESGTGWPSFYQPIDGEMVGEQEDRSFFMRRTEVHCNRCDGHLGHVFPDGPAPTGLRYCINGAALKFDAEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LZL4</accession>
    <name>A0A1M5LZL4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Invasion protein IalB, involved in pathogenesis</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0565</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70461.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899115.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0565"/>
    <dbReference type="EnsemblBacteria" id="SHG70461">
        <property type="protein sequence ID" value="SHG70461"/>
        <property type="gene ID" value="SAMN05444003_0565"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038696">
        <property type="entry name" value="IalB_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010642">
        <property type="entry name" value="Invasion_prot_B"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06776">
        <property type="entry name" value="IalB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012635407" evidence="1">
        <location>
            <begin position="23"/>
            <end position="200"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG70461.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="200" mass="21305" checksum="498E52E81264845E" modified="2017-03-15" version="1">MFKKTIVAVATTAVFAGSFAFAQEDTDDAVANTESTLSLGEEVTQAPREPQVGETYIGSVEGDWALRCLKAEEGSVDPCQLYQLLNDESGNSVAEMSLFPIPNGERAAAGATIVVPLETFLTEQVTLSIDGGTARRYPFTFCNSAGCVARVGFTAEEIDQFKRGNQATMRIVPAAAPDEEVILSISLSGFTAAYDKLENS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LZW4</accession>
    <name>A0A1M5LZW4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0569</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70538.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0569"/>
    <dbReference type="EnsemblBacteria" id="SHG70538">
        <property type="protein sequence ID" value="SHG70538"/>
        <property type="gene ID" value="SAMN05444003_0569"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009912183" evidence="1">
        <location>
            <begin position="23"/>
            <end position="506"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG70538.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="506" mass="54504" checksum="683496F1B1945D8A" modified="2017-03-15" version="1">MRQLLSALCFLAIAPTALFAQANEPLSVIDWLSDSVTDEQALGDRGLEPPTATSARPPDVLVTQLDMPTPDAVGLFSSATLGLPNSMWSLSEETSLVELVSDLPDPKIPVLQDLLVTLLLIQSDPPFGATPQGRFFLSRVDKLLELGRLEEAGALLDATDLNTPEIFRRQFDVSLLTGTEDKACRSLSQGSKVAPSYAARIYCLAREGDWPAAALTLNTRRALGDISDDDDLLFSLFLDPEIFDHSLELPEPDRVTPLIFRIREAVGESLSTVELPLAFAHADLRSINGWKTQLDAAERLARNGAIEPNVMKALFTTRRPSASGGVWDKVAALQALQAALDSERTDAVGAALPSAFESAKEMGAEALFSEIYSNEVSEYDLTGEAAEIAATMMLLSPGSELDMSGVNVDPFLVAVAQGRPQEVRATEPRRLAIQAAFNGATPPQSVQTLLDDGRTGEAILEAIHLTEGGLDGDLNAMRDAITILRAVGLEDIARKASLQFLLMERL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M3Y9</accession>
    <name>A0A1M5M3Y9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, AraC family with amidase-like domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0626</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG71950.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899185.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0626"/>
    <dbReference type="EnsemblBacteria" id="SHG71950">
        <property type="protein sequence ID" value="SHG71950"/>
        <property type="gene ID" value="SAMN05444003_0626"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002818">
        <property type="entry name" value="DJ-1/PfpI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018062">
        <property type="entry name" value="HTH_AraC-typ_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01965">
        <property type="entry name" value="DJ-1_PfpI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00041">
        <property type="entry name" value="HTH_ARAC_FAMILY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="2">
        <location>
            <begin position="228"/>
            <end position="326"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG71950.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="333" mass="37425" checksum="DA9D2FCF2CA5EC94" modified="2017-03-15" version="1">MNTTVPTIDVEHIGKPRRFVFVLLKNFTMLSFASAIEALRIANRTSGKELYVWTKIGEGGESIACSNGCEFQLDGDLIETERDDTIMLCGGIDIQDATTKKLLNWVRREARKGATIAGLCTAGYSMARAGLLDGKKATIHWENQDSFTEEFDEVELTKSVFVIDGNRMTTAGGTASIDMMLKLIADDHGEELGNAVADQLIYSSIRTDQDTQRLSIPTRIGVRHPKLSQVIQMMEQNIEEPISPSILAKEVGMSTRQLERLFRRYLSRSPKRYYMELRLQKARNLLMQTDMTVINVALACGFASPSHFSKCYRSHYNTTPYRERGTMATRLSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M485</accession>
    <name>A0A1M5M485_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0633</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72132.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899199.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0633"/>
    <dbReference type="EnsemblBacteria" id="SHG72132">
        <property type="protein sequence ID" value="SHG72132"/>
        <property type="gene ID" value="SAMN05444003_0633"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Histidine kinase" evidence="4">
        <location>
            <begin position="118"/>
            <end position="343"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG72132.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="350" mass="38596" checksum="2A6B2E2ED389B190" modified="2017-03-15" version="1">MTPDTTAALLETIPTPIILIGRDQTVHAMNEPAERLIGGHMKGRHYITALRQPYLLDKVEQVLRNGEAADARYLGRDAGRDTVFQVHIANSPLGVVLSFKDKTADEDIGQLRRDFVANVSHELRTPLTALTGFIETLRGAAKSDPVAQDRFLSIMEREAGRMTRLVDDLLSLSRVEAEGRVRPSDKVDLSAVVSATIANLEPVLGQSNVQIHVDDQSDGALVQGDQNQLRQVVSNLIENAVKYGHVDGNIFIFITTPSHEVALRAEGLRLIVRDDGPGIAPHHLARLTERFYRVDSHRSREIGGTGLGLAIVKHIVNRHRGRLQIDSVEGEGTIFTIVLPTFFEKQMPVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M614</accession>
    <name>A0A1M5M614_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0658</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72727.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899245.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0658"/>
    <dbReference type="EnsemblBacteria" id="SHG72727">
        <property type="protein sequence ID" value="SHG72727"/>
        <property type="gene ID" value="SAMN05444003_0658"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007462">
        <property type="entry name" value="COV1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31876">
        <property type="entry name" value="PTHR31876"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04367">
        <property type="entry name" value="DUF502"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="81"/>
            <end position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG72727.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="239" mass="26770" checksum="8B45CCC3A356E4F1" modified="2017-03-15" version="1">MEDEQNIDDLRRRRPGLISRLRSNFLAGIIIIAPIALTLWLIWTVVGWIDSWVWPFIPSAYHPEEIVNWALGLEGEEQISFNVRGFGVIVFLFFTVVVGWIGKGLLGRSFLRFGEGIVDRMPVIRSVYNGVKQIAETVFSQRDTSFDKACMIEYPRRGIWAIAFVSTDAKGEVKTIASEDEDVATVFLPTTPNPTSGFLLFLPRKDVRLLDMSVEDAAKLVISAGLVYPDGTVPPQPDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M8W4</accession>
    <name>A0A1M5M8W4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Amino acid ABC transporter substrate-binding protein, PAAT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0699</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73671.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899316.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0699"/>
    <dbReference type="EnsemblBacteria" id="SHG73671">
        <property type="protein sequence ID" value="SHG73671"/>
        <property type="gene ID" value="SAMN05444003_0699"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001638">
        <property type="entry name" value="Solute-binding_3/MltF_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00497">
        <property type="entry name" value="SBP_bac_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00062">
        <property type="entry name" value="PBPb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012409400" evidence="2">
        <location>
            <begin position="21"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="domain" description="PBPb" evidence="3">
        <location>
            <begin position="34"/>
            <end position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG73671.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="270" mass="28311" checksum="89BF7A5E60AED5D8" modified="2017-03-15" version="1">MKTTSFISIVFALSATSALAGGHCAAGKTLTEGKLTIATGNPAYYPWVMDDSPESGEGFEAAVAYAVAAEMGFAADDVVWVRSSFDEAIQPGAKNFDMNMQQYSITPERDEVVDFSAPYYSAPMAVLVVGEGKNAEATLEGLKGLLWGAVGTTTAVPMLTDLIQPDSDPLLYGDNADVTAAMQAGQIDAALFDLPTALFLSAVMIEGSSILGQFPADRSDNPDQFGMLMEDGNPLKACVDEALAALTDSGALAEIEAKWLQDTTGVPLID</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M962</accession>
    <name>A0A1M5M962_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Polyphosphate kinase 2, PA0141 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0706</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the polyphosphate kinase 2 (PPK2) family. Class I subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73812.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899332.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0706"/>
    <dbReference type="EnsemblBacteria" id="SHG73812">
        <property type="protein sequence ID" value="SHG73812"/>
        <property type="gene ID" value="SAMN05444003_0706"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008976">
        <property type="term" value="F:polyphosphate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016898">
        <property type="entry name" value="Polyphosphate_phosphotransfera"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022488">
        <property type="entry name" value="PPK2-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022486">
        <property type="entry name" value="PPK2_PA0141"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03976">
        <property type="entry name" value="PPK2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF028756">
        <property type="entry name" value="PPK2_prd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03707">
        <property type="entry name" value="PPK2_P_aer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PPK2" evidence="4">
        <location>
            <begin position="46"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009924"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF03976"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG73812.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="289" mass="33553" checksum="24366FFE669BB234" modified="2017-03-15" version="1">MDKPFDGGISRFFNESAPAELREAIETAKKGDILNPDYPYDERWGRKEYEVSLANLQIELVKLQASVRERGDRIVVVFEGRDAAGKGGAIKRFRENLNPRQARVVALSKPTDRQSTQWYFQRYIKHLPSAGEIVFFDRSWYNRGVVEHVFEFCTLDQRAHWFNQVSDFENLLTDDGIQLFKIWLNVGRATQLQRFLERETDPLKHWKLSWIDVEGLNRWDAYTDAIRETLDRSHSTHAPWTIVRSDDKRRARVNAIRSVLSAVDYDLKDKKAIGDIDPLVAGGPDIWDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M989</accession>
    <name>A0A1M5M989_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transcriptional regulator, TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_0707</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73830.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899335.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0707"/>
    <dbReference type="EnsemblBacteria" id="SHG73830">
        <property type="protein sequence ID" value="SHG73830"/>
        <property type="gene ID" value="SAMN05444003_0707"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025996">
        <property type="entry name" value="TetR_C_WHG"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13305">
        <property type="entry name" value="TetR_C_33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="5">
        <location>
            <begin position="9"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="4">
        <location>
            <begin position="32"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG73830.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="205" mass="22314" checksum="E80557F54D893605" modified="2017-03-15" version="1">MPKRGYHHGNLREALVEACLKLIEAKGPTGFTLSEASREAGVTPAAVYRHFEGREDLIAEAARQGYEIFADLMEYAYSKGQPSALAAFEATGRAYLAFAQKYPGHYIAMFESGISINRTPELNAVATRALGVLEKAAIDLSQHIPEEKRPPPQMFSAHIWAMSHGVVELFARGSPGTKSPYPPEDLLETGIGVYLRGLGLVAPDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M9A5</accession>
    <name>A0A1M5M9A5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Lipid A 3-O-deacylase (PagL)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0708</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73852.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899337.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0708"/>
    <dbReference type="EnsemblBacteria" id="SHG73852">
        <property type="protein sequence ID" value="SHG73852"/>
        <property type="gene ID" value="SAMN05444003_0708"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018550">
        <property type="entry name" value="Lipid-A_deacylase-rel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09411">
        <property type="entry name" value="PagL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG73852.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="171" mass="19021" checksum="C22FE839D1B0F2D2" modified="2017-03-15" version="1">MEGWLAGVFAVFGFTDMYLNDCQTSCLAYSEDQARWHVQLGGTEFNNRWIGEEILIGYDFGRKYGPFQPIASASVTDTGDAWVGAGLKWTSEHLLDAPIYFETYAMPGLYAAGDGPDIGGFIQFRGSIGFGYEFHNGVRAVVAYDHRSNAHIWETNPGLETLHLRLSVPIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M9U6</accession>
    <name>A0A1M5M9U6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Metal-dependent carboxypeptidase</fullName>
            <ecNumber evidence="1">3.4.17.19</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0718</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Release of a C-terminal amino acid with broad specificity, except for -Pro.</text>
            <dbReference type="EC" id="3.4.17.19"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="2">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase M32 family.</text>
    </comment>
    <dbReference type="EC" id="3.4.17.19" evidence="1"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74052.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899351.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0718"/>
    <dbReference type="EnsemblBacteria" id="SHG74052">
        <property type="protein sequence ID" value="SHG74052"/>
        <property type="gene ID" value="SAMN05444003_0718"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004181">
        <property type="term" value="F:metallocarboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001333">
        <property type="entry name" value="Peptidase_M32_Taq"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34217">
        <property type="entry name" value="PTHR34217"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02074">
        <property type="entry name" value="Peptidase_M32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006615">
        <property type="entry name" value="Zn_crbxpep_Taq"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00998">
        <property type="entry name" value="CRBOXYPTASET"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0121">Carboxypeptidase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <feature type="active site" description="Proton donor/acceptor" evidence="3">
        <location>
            <position position="255"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="254"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="258"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="284"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR006615"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR006615-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR006615-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG74052.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="489" mass="54046" checksum="F741536FC1EAC2E5" modified="2017-03-15" version="1">MSAYDDLMAYERQTQALSQVAGRLGWDQETMMPEGATPQRAEEHAAMASVLHARRTNPQVGEWLAKAEATDDVAKANLYHIQKDYDRTMRMPSDLAEELAKTTSLAHLVWAQARADEDVASFLPMLEKVLKLRREEAAAVGDGGDAYDALLDSYEPEATGAQIAGMFDALRPRLVALRAAVLDKSAPAQLNQTFDEAGQLALSQKLAQAFGYNTENGRIDKAVHPFSSGSGLDVRITTRTSADDPFNCFYSTIHEVGHACYEQNINSDHLLTPLGGGVSMGVHESQSRIYENQLGRSRAFTGWLYGQMRDQFGDFGISDEDAFYACVNRVSDGFIRTEADEVQYNLHVMLRFDLERALIAGDLTVADLEAAWNDRFLSDFGFAVEKPSNGVLQDVHWSEGLFGYFPTYSLGNVYAGCLHAALREDIVDLDDHLARGNTEPATTWLRENVQQYGGLMKPVEVIAQASRQEPSEGPLLDYLETKFGGIYGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MKW6</accession>
    <name>A0A1M5MKW6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized 2Fe-2 and 4Fe-4S clusters-containing protein, contains DUF4445 domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0861</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77413.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899567.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0861"/>
    <dbReference type="EnsemblBacteria" id="SHG77413">
        <property type="protein sequence ID" value="SHG77413"/>
        <property type="gene ID" value="SAMN05444003_0861"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.480">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027980">
        <property type="entry name" value="RACo_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040506">
        <property type="entry name" value="RACo_linker"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041414">
        <property type="entry name" value="Raco_middle"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042259">
        <property type="entry name" value="Raco_middle_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14574">
        <property type="entry name" value="RACo_C_ter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17650">
        <property type="entry name" value="RACo_linker"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17651">
        <property type="entry name" value="Raco_middle"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="2">
        <location>
            <begin position="5"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="659"/>
            <end position="681"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG77413.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="681" mass="72974" checksum="F173254CED1A4ED6" modified="2017-03-15" version="1">MSNDPLVIFTPSGKRGNFPVGTPILTAARQLGVDLDSVCGGRGICSKCQITPSFGEFPKHGVTVYEDALSEWNSVEQRYDDIRGLTKGRRLGCQATVQGDVVIDVPPESQVHRQVVRKRAEAREIVMNPSTRLYYVEVEEPDMHDPSGDLERLIKALRADWDLPQLEADLGVLTGLQPALRKGEWKVTCAVHLGDDTFSPRIMQVWPGFYDGSIYGLAVDLGSTTIAAHLCDLTTGEVVASSGIMNPQIRFGEDLMSRVSYGMMNPSGADEMTKAVREGMNALFVQIASEAEIDRNLIVDAVFVCNPVMHHLFLGIDPFELGQAPFALATSEALALRTLELDLNLHPAARVYILPCIAGHVGADAAAVALSEAPDKSDDLVLVVDVGTNAEILLGNKEKVLACSSPTGPAFEGAQISSGQRAAPGAIERIEIDPVTKEPRFRVIGCDLWSDEEGFEAQTAATGITGICGSGIIEAVAEMRLAGIVDGPGLIGSAEQTGTDRCFPEGRTNSYLVHDGTADGGPKITVTNVDIRQIQMAKAALYSGARLLMDKFGVDAVDRVVLAGAFGAHISPKHAMVLGMIPDAPFEKVTSAGNAAGTGARIALLNTEARKDIETTVQNIEKIETAIEPRFQEHFVNASAIPNSAEPFPILNSLVDLPNINHNQGGGDEEAGGRRRRRRRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MNW1</accession>
    <name>A0A1M5MNW1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">TRAP transporter, DctM subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0920</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78732.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899644.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0920"/>
    <dbReference type="EnsemblBacteria" id="SHG78732">
        <property type="protein sequence ID" value="SHG78732"/>
        <property type="gene ID" value="SAMN05444003_0920"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010656">
        <property type="entry name" value="DctM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004681">
        <property type="entry name" value="TRAP_DctM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33362">
        <property type="entry name" value="PTHR33362"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06808">
        <property type="entry name" value="DctM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006066">
        <property type="entry name" value="HI0050"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="7"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="85"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="139"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="174"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="213"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="244"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="387"/>
            <end position="404"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="424"/>
            <end position="449"/>
        </location>
    </feature>
    <feature type="domain" description="DctM" evidence="4">
        <location>
            <begin position="7"/>
            <end position="443"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF06808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG78732.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="450" mass="47520" checksum="71898BB23486CCFA" modified="2017-03-15" version="1">MTDATWITIISLGVTFLFMMGTPVLLIIFYWVVGCSFVLDLTLDNTGAELLNVFKDGFALMAMPLFILTGDLINKSGIAKRLSDFAYACLGWIRGGLAMASLGACGLFAAISGSNSATTATIGSMLHPEMVKGGYDERFSAATAAAGGCVGIIIPPSIIFIVYGFLMNLPISDLFIAGIIPGTLMVLAMMVACFIVCSINGWGFLINLSMKRVIMTGIGAWLGFFAIGLVLWGIYTGKFSPTEAAGVTVGFCIIVGMLSHFASRTMGVKSDVPVDEKTFAAQLVVDGFTLREIPSIVVRSAQITGILAPLIAVSVVMQQILSLLGAQETIGTFVNSMGGYYPVLFTAMAMVFVAGMILESLPVTIILAPILAPIAANVGVDPVHFSVIFLVGASIGFITPPYGLNLYVASGVTGVPYFRLLRYSSIYLVSLLAIWFLVALVPATALALLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MT65</accession>
    <name>A0A1M5MT65_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF3291 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1002</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80397.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899745.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1002"/>
    <dbReference type="EnsemblBacteria" id="SHG80397">
        <property type="protein sequence ID" value="SHG80397"/>
        <property type="gene ID" value="SAMN05444003_1002"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021708">
        <property type="entry name" value="DUF3291"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11695">
        <property type="entry name" value="DUF3291"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF3291" evidence="1">
        <location>
            <begin position="3"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF11695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG80397.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="149" mass="17139" checksum="51A7D3C028E05338" modified="2017-03-15" version="1">MHLAELNIGRLIAPTDDPRVAEFMNNLDRVNGLGKRMPGFVWMMEGSGEPGTGNTDVKIDGDPQFVSNLTVWKNLESLETFVYNTLHSKFMDRKAEWFEVLGKQHFVMWRVEEGHRPSLEEALQKLAYRETHGDSDVAFGWDWLRSQKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MVP2</accession>
    <name>A0A1M5MVP2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Pseudouridine synthase</fullName>
            <ecNumber evidence="3">5.4.99.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1046</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the pseudouridine synthase RsuA family.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.-" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81285.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1046"/>
    <dbReference type="EnsemblBacteria" id="SHG81285">
        <property type="protein sequence ID" value="SHG81285"/>
        <property type="gene ID" value="SAMN05444003_1046"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140098">
        <property type="term" value="F:catalytic activity, acting on RNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009982">
        <property type="term" value="F:pseudouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034470">
        <property type="term" value="P:ncRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001522">
        <property type="term" value="P:pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1560">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.580">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042092">
        <property type="entry name" value="PsdUridine_s_RsuA/RluB/E/F_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020103">
        <property type="entry name" value="PsdUridine_synth_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006145">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000748">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluB/E/F"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018496">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluB_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020094">
        <property type="entry name" value="TruA/RsuA/RluB/E/F_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00849">
        <property type="entry name" value="PseudoU_synth_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55120">
        <property type="entry name" value="SSF55120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00093">
        <property type="entry name" value="TIGR00093"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01149">
        <property type="entry name" value="PSI_RSU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PseudoU_synth_2" evidence="4">
        <location>
            <begin position="26"/>
            <end position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008348"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG81285.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="202" mass="23228" checksum="68E7CCD7DF04A94D" modified="2017-03-15" version="1">MYTEKERLNTVALLRTAPLSRHMAKLVLFNKPFDVLSQFTDAKSPTPRRTLSDFIDIPKVYPAGRLDRDSEGLLLLTDDGRLQAKISNPKSKMNKTYLVQVEGDPSNKDLQPLRDGVYLKDGPTSPAKVELIDPPELWDRDPPVRYRKSIPDRWVSITIHEGRNRQVRRMTAHVGFPTLRLVRWRIGDWTVEGLDQGAWREA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MXR1</accession>
    <name>A0A1M5MXR1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Ketol-acid reductoisomerase (NADP(+))</fullName>
            <shortName evidence="9">KARI</shortName>
            <ecNumber evidence="9">1.1.1.86</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Acetohydroxy-acid isomeroreductase</fullName>
            <shortName evidence="9">AHIR</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">Alpha-keto-beta-hydroxylacyl reductoisomerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">ilvC</name>
        <name evidence="13" type="ORF">SAMN05444003_1086</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 9">Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>(2R)-2,3-dihydroxy-3-methylbutanoate + NADP(+) = (2S)-2-acetolactate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:22068"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:49072"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:58476"/>
            <dbReference type="EC" id="1.1.1.86"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>(2R,3R)-2,3-dihydroxy-3-methylpentanoate + NADP(+) = (S)-2-ethyl-2-hydroxy-3-oxobutanoate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:13493"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:49256"/>
            <dbReference type="ChEBI" id="CHEBI:49258"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.1.1.86"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="9">Binds 2 magnesium ions per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 9">Amino-acid biosynthesis; L-isoleucine biosynthesis; L-isoleucine from 2-oxobutanoate: step 2/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 9">Amino-acid biosynthesis; L-valine biosynthesis; L-valine from pyruvate: step 2/4.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 9 10">Belongs to the ketol-acid reductoisomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.86" evidence="9"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82130.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899818.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1086"/>
    <dbReference type="EnsemblBacteria" id="SHG82130">
        <property type="protein sequence ID" value="SHG82130"/>
        <property type="gene ID" value="SAMN05444003_1086"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00047">
        <property type="reaction ID" value="UER00056"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00049">
        <property type="reaction ID" value="UER00060"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004455">
        <property type="term" value="F:ketol-acid reductoisomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009099">
        <property type="term" value="P:valine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00435">
        <property type="entry name" value="IlvC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013023">
        <property type="entry name" value="KARI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000506">
        <property type="entry name" value="KARI_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013116">
        <property type="entry name" value="KARI_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014359">
        <property type="entry name" value="KARI_prok"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21371">
        <property type="entry name" value="PTHR21371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01450">
        <property type="entry name" value="IlvC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07991">
        <property type="entry name" value="IlvN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000116">
        <property type="entry name" value="IlvC_gammaproteo"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00465">
        <property type="entry name" value="ilvC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51851">
        <property type="entry name" value="KARI_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51850">
        <property type="entry name" value="KARI_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 9 10" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="8 9 10" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="13" id="KW-0413">Isomerase</keyword>
    <keyword evidence="7 9 10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6 9 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-0521">NADP</keyword>
    <keyword evidence="9 10" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="KARI N-terminal Rossmann" evidence="11">
        <location>
            <begin position="1"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="domain" description="KARI C-terminal knotted" evidence="12">
        <location>
            <begin position="183"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="108"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="24"/>
            <end position="27"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="48"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="51"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="53"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="134"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9 10">
        <location>
            <position position="191"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9 10">
        <location>
            <position position="195"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9 10">
        <location>
            <position position="227"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9 10">
        <location>
            <position position="231"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9 10">
        <location>
            <position position="252"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004864"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010318"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51851"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHG82130.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="340" mass="37191" checksum="B7E934A210B778EF" modified="2017-03-15" version="1">MRVYYDRDCDVNLIKDKKVAILGYGSQGHAHALNLRDSGAKNLVVALREGSPSAAKAEGEGLTVMGISEAAAWCDLIMFTMPDELQAETYKKYVHDHLKPGSAIAFAHGLNVHFGLIEPKEGVDVIMMAPKGPGHTVRGEYTKGGGVPCLVAVDTDASGKALEIGLSYCSAIGGGRSGIIETNFRQECETDLFGEQAVLCGGIVELIRMGFETLVEAGYEPEMAYFECLHETKLIVDLIYEGGIANMNYSISNTAEYGEYVSGPRVLPYEATKKAMKDVLTDIQTGKFVRDFMQENAVGQPFFKATRRINDEHQIEQVGEKLRGMMPWISEGKMVDKSKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MZI3</accession>
    <name>A0A1M5MZI3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Exodeoxyribonuclease 7 large subunit</fullName>
            <ecNumber evidence="5">3.1.11.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Exodeoxyribonuclease VII large subunit</fullName>
            <shortName evidence="5">Exonuclease VII large subunit</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">xseA</name>
        <name evidence="10" type="ORF">SAMN05444003_1111</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5 6">
            <text>Exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield nucleoside 5'-phosphates.</text>
            <dbReference type="EC" id="3.1.11.6"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="5">Heterooligomer composed of large and small subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5 6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5 6">Belongs to the XseA family.</text>
    </comment>
    <dbReference type="EC" id="3.1.11.6" evidence="5"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82730.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900434.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1111"/>
    <dbReference type="EnsemblBacteria" id="SHG82730">
        <property type="protein sequence ID" value="SHG82730"/>
        <property type="gene ID" value="SAMN05444003_1111"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009318">
        <property type="term" value="C:exodeoxyribonuclease VII complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008855">
        <property type="term" value="F:exodeoxyribonuclease VII activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006308">
        <property type="term" value="P:DNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04489">
        <property type="entry name" value="ExoVII_LU_OBF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00378">
        <property type="entry name" value="Exonuc_7_L"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003753">
        <property type="entry name" value="Exonuc_VII_L"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020579">
        <property type="entry name" value="Exonuc_VII_lsu_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025824">
        <property type="entry name" value="OB-fold_nuc-bd_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30008">
        <property type="entry name" value="PTHR30008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02601">
        <property type="entry name" value="Exonuc_VII_L"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13742">
        <property type="entry name" value="tRNA_anti_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00237">
        <property type="entry name" value="xseA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 5 6" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="3 5 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 5 6" id="KW-0540">Nuclease</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="tRNA_anti_2" evidence="9">
        <location>
            <begin position="16"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="domain" description="Exonuc_VII_L" evidence="8">
        <location>
            <begin position="132"/>
            <end position="485"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="486"/>
            <end position="505"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004355"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02601"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF13742"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG82730.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="505" mass="54734" checksum="C65B003D4C0E50FB" modified="2017-03-15" version="1">MDLFDEEPAKGNAPEFTVSELTGSVKKALEGAFGRVRVRGEVGRVVRAKSGHLYYDIKDERNVIACNTWKGQVTGLGVLPEEGLEVIVTGKLSTFGPQSKYNINVDSIEVAGAGALMAMLEKRKKALAAEGLFAPERKKELPYLPEIIGVVTSPSGAVIRDILHRLRDRFPRKVLVWPVAVQGANCAPEVARAIEGFNALTPGGALPRPDLLIVARGGGSIEDLWGFNEEVVARAAAASDIPLISAVGHETDTTLIDFVSDQRAPTPTAAAELAVPVRMELLAWADQQGARLTHALTSGVQRRGQRLADVARALPQPEALTSVPQQRFDLASGRLDHALQRAVAQKRLKLADAPLRPAMLTRVVAQERRRVVELSARSGPALERQAMRARDRLERIQVRAPDVTQAKTRLEHASQRLSSIARSKQAERAKRLEALDRLRETLGYRETLKRGYAVVRGDGDLVTTQAAAKSAKSLEIEFADGRLTVGGSKLPAKKRAGDGDQGSLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N0B4</accession>
    <name>A0A1M5N0B4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1106</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899834.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG82609">
        <property type="protein sequence ID" value="SHG82609"/>
        <property type="gene ID" value="SAMN05444003_1106"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013245947" evidence="1">
        <location>
            <begin position="18"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG82609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="304" mass="32833" checksum="F264791E2442E8F3" modified="2017-03-15" version="1">MKRLIAALLMLAGSANAQDMTPTICADSVVPLTTLTGLPGVTSSVAADGRCTALDVVIYQDDRQTLRADRVYWRLEGADRWIEDGLPPTRIDISAEGIWPEFKTGDVVLDYLLRVQNKRSGISVELVLEWDEDEDDLLVEAVFLDFGPLGYIDASAKVTGVDLGSRFALRASALTGKLTELDIKVQSTGLFENYALLPLGTLVLRGEAYPARATAIIKSHVIDDIRALDSPSLNEQSKDALVALVEELPNPNGIFELSLRSEDGLGARSLGPAFLTGKLDTFSDAINALSDSDIAINWTSLSKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N0N7</accession>
    <name>A0A1M5N0N7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1126</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83108.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899852.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG83108">
        <property type="protein sequence ID" value="SHG83108"/>
        <property type="gene ID" value="SAMN05444003_1126"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025498">
        <property type="entry name" value="DUF4389"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14333">
        <property type="entry name" value="DUF4389"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG83108.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="94" mass="10608" checksum="7F5E54A033E5071C" modified="2017-03-15" version="1">MQDDQTPNDAPESDYDNMFIRLVTMIIVAVLLSMAHTLLGLITVAQFVIMLVNQREPNEQLAEFGTTMGMWMAKAARYQTGASEVKPWPFTQLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N3B4</accession>
    <name>A0A1M5N3B4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Endonuclease/Exonuclease/phosphatase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1165</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84031.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899885.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1165"/>
    <dbReference type="EnsemblBacteria" id="SHG84031">
        <property type="protein sequence ID" value="SHG84031"/>
        <property type="gene ID" value="SAMN05444003_1165"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="SSF56219"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="2" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endo/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="43"/>
            <end position="302"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG84031.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="344" mass="38757" checksum="6CDDE7E6A6626513" modified="2017-03-15" version="1">MPASQLSIATFNLFNLNLPGLRMYRDPDGWTQDQYDKKIEWTARMLKQGDADVWGFQEHWHNDALTEAVEQAGLDGTHTLLMPDGHAGQKIQCAALVRNEMLQGDPEWITSFPEGCFLRSSGEDDQTPSIELEVNAFSRPVLNFMIKPARSKDAIRVFVCHFKSKAPTRVSSEDWYKRDPDLYHAHQSTLGSALSTIRRTAEAAALRVILNDYLRGGGQPAIVLGDLNDGIQSNTLNIMTAQPTFLLDGRPSEGSDVGLYSVSTMLQLRSERDVYYSHIYKNRMETLDHILVSEELYDLSRDREWGFAGAEIVNDHLNREDHKDTGTGDHGIVRAQFTGRSSLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N3G9</accession>
    <name>A0A1M5N3G9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 10">3,4-dihydroxy-2-butanone 4-phosphate synthase</fullName>
            <shortName evidence="10">DHBP synthase</shortName>
            <ecNumber evidence="6 10">4.1.99.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">ribB</name>
        <name evidence="12" type="ORF">SAMN05444003_1144</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 10">Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>D-ribulose 5-phosphate = (2S)-2-hydroxy-3-oxobutyl phosphate + formate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:18457"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:58121"/>
            <dbReference type="ChEBI" id="CHEBI:58830"/>
            <dbReference type="EC" id="4.1.99.12"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="10">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="10">Binds 2 divalent metal cations per subunit. Magnesium or manganese.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 10">Cofactor biosynthesis; riboflavin biosynthesis; 2-hydroxy-3-oxobutyl phosphate from D-ribulose 5-phosphate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the DHBP synthase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">In the C-terminal section; belongs to the GTP cyclohydrolase II family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">In the N-terminal section; belongs to the DHBP synthase family.</text>
    </comment>
    <dbReference type="EC" id="4.1.99.12" evidence="6 10"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83533.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899867.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1144"/>
    <dbReference type="EnsemblBacteria" id="SHG83533">
        <property type="protein sequence ID" value="SHG83533"/>
        <property type="gene ID" value="SAMN05444003_1144"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00275">
        <property type="reaction ID" value="UER00399"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008686">
        <property type="term" value="F:3,4-dihydroxy-2-butanone-4-phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030145">
        <property type="term" value="F:manganese ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009231">
        <property type="term" value="P:riboflavin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10990">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00180">
        <property type="entry name" value="RibB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017945">
        <property type="entry name" value="DHBP_synth_RibB-like_a/b_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000422">
        <property type="entry name" value="DHBP_synthase_RibB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032677">
        <property type="entry name" value="GTP_cyclohydro_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036144">
        <property type="entry name" value="RibA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00926">
        <property type="entry name" value="DHBP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00925">
        <property type="entry name" value="GTP_cyclohydro2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF142695">
        <property type="entry name" value="SSF142695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55821">
        <property type="entry name" value="SSF55821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00506">
        <property type="entry name" value="ribB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="10" id="KW-0456">Lyase</keyword>
    <keyword evidence="10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="10" id="KW-0464">Manganese</keyword>
    <keyword evidence="9 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 10" id="KW-0686">Riboflavin biosynthesis</keyword>
    <feature type="domain" description="GTP_cyclohydro2" evidence="11">
        <location>
            <begin position="227"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="region of interest" description="D-ribulose 5-phosphate binding" evidence="10">
        <location>
            <begin position="43"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="region of interest" description="D-ribulose 5-phosphate binding" evidence="10">
        <location>
            <begin position="156"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="44"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="48"/>
        </location>
        <ligand>
            <name>D-ribulose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58121"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="159"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="site" description="Essential for catalytic activity" evidence="10">
        <location>
            <position position="142"/>
        </location>
    </feature>
    <feature type="site" description="Essential for catalytic activity" evidence="10">
        <location>
            <position position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004904"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00008976"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012153"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00018836"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022619"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00925"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG83533.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="376" mass="40545" checksum="E8EA93E9FB781097" modified="2017-03-15" version="1">MSTAYETPGQVEKDWSEAISPIEEIIEDARNGRMFVLVDHEDRENEGDLVIPAQMATPDAINFMAKHGRGLICLTLTSDRIDELGLPLMASHNSSRHETAFTISIEAREGVTTGISAADRARTVSTAIDASKGAADIATPGHVFPLRARDGGVLVRAGHTEAAVDISRLAGLNPSGVICEIMKEDGEMARLPELVAFAQLHGLKVGTISDLIAYRRRHDNLVKVNKSETITSEFGGEWELRVFSDETQGAEHIALIKGDITTDEPVLVRMHAMDPMLDVVGTGPKGRRNEFGDAMNLIAEEGRGVLVLLRDVHMKIDAVDDVSPQTLRQYGVGAQILSGLGLSDITLLTNSPQPKVVGLDAYGLEIVGTRKVSEIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N3I7</accession>
    <name>A0A1M5N3I7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1164</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899884.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1164"/>
    <dbReference type="EnsemblBacteria" id="SHG84002">
        <property type="protein sequence ID" value="SHG84002"/>
        <property type="gene ID" value="SAMN05444003_1164"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="45"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG84002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="161" mass="17193" checksum="7B8D513743FC8BDA" modified="2017-03-15" version="1">MHPQLSDGVYAQLEAAPPRRGFAYAVLLGLGALLIYLSFVSLGGFGSRLVLLGFGLVALYGAEKLRTATAGRLLLTDAGIEDGDGRVLVEWNNIKGVERGAFALKPSNGFTVHTRASMSREWAPGLWWRVGKRFGVGGVSAAGASKFMAEQIAFRLAQKPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N414</accession>
    <name>A0A1M5N414_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1177</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84300.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899896.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG84300">
        <property type="protein sequence ID" value="SHG84300"/>
        <property type="gene ID" value="SAMN05444003_1177"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="2"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="25"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG84300.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="186" mass="20120" checksum="C3680F32E384478D" modified="2017-03-15" version="1">MGKSDDIIVECAIAIISQGGYKKTTMADLADAAGVSRQTLYNKFPNKEEVLRAAVRHAHATGLAEMKRQWSEAESVGDKLEAFFQIGPLSWYDAIIASPDSADLIEGVNTHASDLMDEANQGWMETLTELFVPYGDVLGEKGTSADTLADFVFATGVSAKYNATSRDQLVKRLATLKIATLTLLEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N7I2</accession>
    <name>A0A1M5N7I2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Betaine aldehyde dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_1226</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="6">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85468.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899936.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1226"/>
    <dbReference type="EnsemblBacteria" id="SHG85468">
        <property type="protein sequence ID" value="SHG85468"/>
        <property type="gene ID" value="SAMN05444003_1226"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008802">
        <property type="term" value="F:betaine-aldehyde dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019285">
        <property type="term" value="P:glycine betaine biosynthetic process from choline"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016160">
        <property type="entry name" value="Ald_DH_CS_CYS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011264">
        <property type="entry name" value="BADH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01804">
        <property type="entry name" value="BADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00070">
        <property type="entry name" value="ALDEHYDE_DEHYDR_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0520">NAD</keyword>
    <keyword evidence="3" id="KW-0558">Oxidation</keyword>
    <keyword evidence="1 6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="7">
        <location>
            <begin position="16"/>
            <end position="474"/>
        </location>
    </feature>
    <feature type="active site" evidence="4">
        <location>
            <position position="250"/>
        </location>
    </feature>
    <feature type="active site" evidence="5">
        <location>
            <position position="284"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG85468.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="485" mass="51612" checksum="184909690D5CC13A" modified="2017-03-15" version="1">MQIQPTASHFINGAYVEDTAGHFIDVVYPYTGEVVAKVHSATPAIIEQAIAAAKAAQADWAARSGVERGRILRRAADIMRDRNHDLSVLETYDTGKPYQETSVADATSGADAFEYFGGLAGALTGEHIPLAGGDFVYTRREALGLCVGIGAWNYPTQIASWKGAPALACGNTMIFKPSETTPLCALKVAEILYEAGAPAGVYNVVQGLGNVGASLITDPRVAKVSLTGSVPTGKKVYASAAEGLRHVTMELGGKSPIIIFDDADLENAVSGAVLGNFYSTGQVCSNGTRVFVQKGIKEAFLNRMSERLASGVNMGDPQDPDTNFGPMVSENQRSIVQGYIEKGKAEGARLVHGGGTPEKEGFFIEPTVFADVTDDMTIAREEIFGPVLSVLDFDTEEEAIRRANDTEFGLAASVFTNDLTRAHRVSAAFEAGTCYINTHNLAPVEAPFGGSKMSGVGRENSKLAINHYSEMKTVYVSMNDVEAPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N828</accession>
    <name>A0A1M5N828_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">5-formyltetrahydrofolate cyclo-ligase</fullName>
            <ecNumber evidence="2">6.3.3.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1234</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>(6S)-5-formyl-5,6,7,8-tetrahydrofolate + ATP = 5,10-methenyltetrahydrofolate + ADP + phosphate</text>
            <dbReference type="Rhea" id="RHEA:10488"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57455"/>
            <dbReference type="ChEBI" id="CHEBI:57457"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.3.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.</text>
    </comment>
    <dbReference type="EC" id="6.3.3.2" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85641.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899944.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1234"/>
    <dbReference type="EnsemblBacteria" id="SHG85641">
        <property type="protein sequence ID" value="SHG85641"/>
        <property type="gene ID" value="SAMN05444003_1234"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030272">
        <property type="term" value="F:5-formyltetrahydrofolate cyclo-ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002698">
        <property type="entry name" value="FTHF_cligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024185">
        <property type="entry name" value="FTHF_cligase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037171">
        <property type="entry name" value="NagB/RpiA_transferase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23407:SF1">
        <property type="entry name" value="PTHR23407:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01812">
        <property type="entry name" value="5-FTHF_cyc-lig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100950">
        <property type="entry name" value="SSF100950"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02727">
        <property type="entry name" value="MTHFS_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010638"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU361279"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG85641.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="184" mass="19702" checksum="11E1659B9609C29B" modified="2017-03-15" version="1">MATLTEIKADARKAAFARRKDAHALGQGTSGYLSEVLAGHRGVPIASYMAMRTEIDPTAAMEEASAYGLVGVPVILGAAKPLKFRTWTPDCTLIVGEFGAMIPESGEWMTPEIVIVPLVAFDCKGGRLGYGGGFYDRTLELLRSQKPTLAIGFAYAAQEADDLPLEETDQPLDLIVTEQGIITP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NA22</accession>
    <name>A0A1M5NA22_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Methyltransferase</fullName>
            <ecNumber evidence="4">2.1.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_1270</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the trimethylamine methyltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.-" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86335.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899975.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1270"/>
    <dbReference type="EnsemblBacteria" id="SHG86335">
        <property type="protein sequence ID" value="SHG86335"/>
        <property type="gene ID" value="SAMN05444003_1270"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015948">
        <property type="term" value="P:methanogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.480">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038601">
        <property type="entry name" value="MttB-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010426">
        <property type="entry name" value="MTTB_MeTrfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06253">
        <property type="entry name" value="MTTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037567">
        <property type="entry name" value="MTTB_MeTrfase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4 6" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR037567"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG86335.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="517" mass="56912" checksum="D33F679F3150FC32" modified="2017-03-15" version="1">MGRTARRRGGGRAGNAARRATASIDQMPWRIPVNIDRPTEPLDEEGVAAIHNGAMTILEDIGIEFLNEEALELFKEAGCTVNGTNVRMGRDWVMEMIGHAPSQFDITPRNPDRKITFGGNHILFGNVSSPPNYFDLEIGKKVPGTRAQCANLLRLTQHFNCIHFAGGYPVEPVDVHASVRHLDVVYDKMVLTDKVAHAYSLGKERVEDVMEMVRIAGGMTDEEFESNPHMYTNINSTSPLKHDVPMIDGCLRLARRGQAVVVTPFTLAGAMAPVTMSGAVTLSIAEGLSAIALFQYVNPGTPCVIGTFTSNVDMKSGAPAFGTPEYMRATQMTGQMARHYGLPMRASGVCAANVPDGQAMWETSNSLWSAVQAGTNMVYHAAGWLEGGLIASPEKFVMDCEVLQMIQRYMEPVITETGPEEIALDAIKEVGSNGHYFGIEHTQQRYEKAFYQPFVSDWRNFEAWEVVGGIWTAQRAHQTFKDIINTFEEPAMDEGIKEELQAFVAKRKEEGGAPTDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NCN9</accession>
    <name>A0A1M5NCN9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Tight adherence protein B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_1327</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87225.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900023.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1327"/>
    <dbReference type="EnsemblBacteria" id="SHG87225">
        <property type="protein sequence ID" value="SHG87225"/>
        <property type="gene ID" value="SAMN05444003_1327"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.81.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018076">
        <property type="entry name" value="T2SS_GspF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042094">
        <property type="entry name" value="T2SS_GspF_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045824">
        <property type="entry name" value="T2SS_TadB-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00482">
        <property type="entry name" value="T2SSF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19360">
        <property type="entry name" value="TadB_TadC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="7"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="94"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="117"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="267"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="295"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="domain" description="TadB_TadC_N" evidence="8">
        <location>
            <begin position="1"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="domain" description="T2SSF" evidence="7">
        <location>
            <begin position="155"/>
            <end position="279"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00482"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF19360"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG87225.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="322" mass="35169" checksum="3457FD0C7F8A6B0D" modified="2017-03-15" version="1">MQVPTELIIYGVIFVAVLAMVQGIYLVAFGKSISMNGKVNRRLELLEKGGGREQVLEQLRKEMTQHMKSQSIPLYSILAAKAQKANIAFTPAQLIMLMGFVSFVAFIGLTVGTTVEAPVRLLVSIAMGIGGVYFWINKKATTRMKMIEEQLPEAVELMVRSLRVGHPFSSAVSIVAKEVADPLGSEMGIIADEAAYGRDMGETLKAMAERLDMQDLRFLAVAVTIQQQSGGNLAEILDGLAKVIRSRFRLFRRVAAITAEAKWSGKLLSGFPILALIVINLIQPNYFDDVIGTPIFIPACLVVAAFLVANLLVMRALVDIKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NGU3</accession>
    <name>A0A1M5NGU3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Nucleoside ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1410</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88740.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900096.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1410"/>
    <dbReference type="EnsemblBacteria" id="SHG88740">
        <property type="protein sequence ID" value="SHG88740"/>
        <property type="gene ID" value="SAMN05444003_1410"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="6"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="253"/>
            <end position="498"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="38"/>
            <end position="45"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG88740.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="505" mass="53636" checksum="7B0412622AB75493" modified="2017-03-15" version="1">MTGTLLKLEGLTKAYPGVVANDNVSFEIQKGEIHALLGENGAGKSTLVKTIYGLVKPDTGRMELNAAEFIPPEPRAARAAGVAMVFQHFSLFDALNVAENIALGMENPPPQRQVAARVREVSEKYGLPLDPDRIVGDLSAGERQRVEIIRCLLQDPKLLIMDEPTSVLTPQEVQILFQTLRQLSEEGTAILYISHKLEEIRALCENATVLRLGAVVGTCDPRETSARDMAEMMVGASLHVPEKATADTGETVLALKALSAPAPHQFGTALKDLNITVQTGEVLGIGGVAGNGQDELVAALSGEMKTAAGMVELRGTPVGQLAPNARRAMGLLAAPEERMGHAAAPDMSLTENAVMTGVTRKSLAQRGFLKWKEAKAFAEDVISTFDVRTPGPENAARSLSGGNLQKFVIGREILQDPDVFVVNQPTWGVDAAAAAAIRQAILDLAAKGAAVICISQDLDELMEISDRFAALNEGRLSEPRPAAGLTVEEIGLMLGGAHDMEAAHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NIS9</accession>
    <name>A0A1M5NIS9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ribosomal-protein-alanine N-acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1443</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89431.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900127.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1443"/>
    <dbReference type="EnsemblBacteria" id="SHG89431">
        <property type="protein sequence ID" value="SHG89431"/>
        <property type="gene ID" value="SAMN05444003_1443"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG89431.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="139" mass="15429" checksum="25AAFA9F6D7A1547" modified="2017-03-15" version="1">MIAKALTETHALAFNDARPWSEQEFEELLKQNRVTLIGDAQSFILARQVADEIEILTLATHPSLHRQGYSTKNLENLVTQARENDASTIFLEVAADNRPAIALYDKAGFAQIATRPAYYARTHGAPVDALILQKKLDPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NPN7</accession>
    <name>A0A1M5NPN7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1508</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900182.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1508"/>
    <dbReference type="EnsemblBacteria" id="SHG90903">
        <property type="protein sequence ID" value="SHG90903"/>
        <property type="gene ID" value="SAMN05444003_1508"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012701">
        <property type="entry name" value="CP_lyase_PhnL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02324">
        <property type="entry name" value="CP_lyasePhnL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="2"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="41"/>
            <end position="48"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG90903.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="227" mass="24591" checksum="52A2BCCAA03FE3BC" modified="2017-03-15" version="1">MIELKDVSKTFTLHNQGSAVIEVINDVSLSVAKGECVALTGASGAGKSTLMRMIYGNYLTQAGEIRIGGVDLVQAEPREVIALRREVLGYVSQFLRVVPRVPTMEVVAEPMRAVGVSVKDAEARAKKLLSQLNIPERLWSLSPTTFSGGEQQRVNIARGFAHEYPAMLLDEPTASLDAANREVVLSLIEEAKARGAAIIGIFHDEAARDRVCDREIDVSAFTPKMAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NPS0</accession>
    <name>A0A1M5NPS0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Phosphonate transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1520</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91189.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900194.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1520"/>
    <dbReference type="EnsemblBacteria" id="SHG91189">
        <property type="protein sequence ID" value="SHG91189"/>
        <property type="gene ID" value="SAMN05444003_1520"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015416">
        <property type="term" value="F:ABC-type phosphonate transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005769">
        <property type="entry name" value="PhnE/PtxC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01097">
        <property type="entry name" value="PhnE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="29"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="97"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="256"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="93"/>
            <end position="278"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG91189.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="291" mass="31886" checksum="5BE4AD985E8E25DE" modified="2017-03-15" version="1">MADIAFSSTQQSVSDIQSHYMEMVQRRRLYGGLMLLIFVVMMVAGFYTVNERNAGGFWEGLHQIGDYPADVLSEAWENRAEMPALLLKYFPALIETINIAAVSTILGVFGGLYLSLLGTRGLAKWPRLIPLFRRISDIMRAVPEIVIALVLIFVLGGGPVPAMIAIAIHTAGALGKMFSEVAENADLKPVEGLASTGATWSQRMLLGVLPQVAPNYISYSLLRFEINIRASAILGFVGAGGLGYELRNAMAWGPGRFDEAAAIFILLFCTIVFFDQLSSRYRNRLTEGQAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NVD4</accession>
    <name>A0A1M5NVD4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Tellurite resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1613</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93472.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900278.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1613"/>
    <dbReference type="EnsemblBacteria" id="SHG93472">
        <property type="protein sequence ID" value="SHG93472"/>
        <property type="gene ID" value="SAMN05444003_1613"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3680.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007791">
        <property type="entry name" value="DjlA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029024">
        <property type="entry name" value="TerB-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05099">
        <property type="entry name" value="TerB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF158682">
        <property type="entry name" value="SSF158682"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TerB" evidence="1">
        <location>
            <begin position="11"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05099"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG93472.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="139" mass="15293" checksum="5221E7833A26AED0" modified="2017-03-15" version="1">MTLETPLTAQDALIALMIAVSASDENIRTSELVKINNAVNNLPVFAGYDAERLPRMSQMVFDLLEPEDGLEALFGLIREALPEHLNETAYALSCDVAAADGTIEGPEARMLEEIRYELDVDRLHAAAIERGARARHMTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NXG7</accession>
    <name>A0A1M5NXG7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Na(+)/H(+) antiporter NhaA</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Sodium/proton antiporter NhaA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">nhaA</name>
        <name evidence="8" type="ORF">SAMN05444003_1642</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>2 H(+)(out) + Na(+)(in) = 2 H(+)(in) + Na(+)(out)</text>
            <dbReference type="Rhea" id="RHEA:29251"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29101"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG94155.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900303.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG94155">
        <property type="protein sequence ID" value="SHG94155"/>
        <property type="gene ID" value="SAMN05444003_1642"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015081">
        <property type="term" value="F:sodium ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006885">
        <property type="term" value="P:regulation of pH"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1530.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01844">
        <property type="entry name" value="NhaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023171">
        <property type="entry name" value="Na/H_antiporter_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004670">
        <property type="entry name" value="NhaA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30341">
        <property type="entry name" value="PTHR30341"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06965">
        <property type="entry name" value="Na_H_antiport_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0050">Antiport</keyword>
    <keyword evidence="3 7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0406">Ion transport</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0915">Sodium</keyword>
    <keyword evidence="7" id="KW-0739">Sodium transport</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="7"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="74"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="113"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="148"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="176"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="205"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="244"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="334"/>
            <end position="357"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="369"/>
            <end position="393"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="413"/>
            <end position="430"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01844"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG94155.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="437" mass="47652" checksum="3970C218B9404674" modified="2017-03-15" version="1">MYRVWNFVTNYSILLILGALIALVWANIDAHSYHIVVEYPLWLNNWVGVETSYWLKSYGADYGMTEVSTEKVLSFHYLVNDVLMAFFFAIAAKEVWEAVILRNGSLRGRKAATPLFATVGGMAGPITVYLGLAYFLGSETYDAVARGWAIPTATDIAFSYLVGRLVFGAGHPAVRFLLLLAIADDAAGLIILAVFYPSGELAPEWLLLSVAAAAAVYFLFNRLPQIMDRGKETRPTSTWVRKRLSFWPYLIAGCLSWYGFQEAGIHPALGLLPIVPTIPHADRAFGIFSEAEQYLTDLLNHIEHLLKHPVEVVLFFFGLLNAGVEFSSIGSPTWLVLAGLMIGKPLGVLLFGWIAAGPMKLGLPQGMRVVDLFVVGCVSAIGFTVSLFIASVAFDSSVMLGDIPVQEAAKMGALFSFAAAILSIIAGKVTRVQKQDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PJ78</accession>
    <name>A0A1M5PJ78_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF418 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1674</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH01840.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900496.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH01840">
        <property type="protein sequence ID" value="SHH01840"/>
        <property type="gene ID" value="SAMN05444003_1674"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007349">
        <property type="entry name" value="DUF418"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04235">
        <property type="entry name" value="DUF418"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="51"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="96"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="139"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="187"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="234"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="258"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="299"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="324"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="domain" description="DUF418" evidence="2">
        <location>
            <begin position="215"/>
            <end position="367"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH01840.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="374" mass="40640" checksum="350AE56D1CAD8BC4" modified="2017-03-15" version="1">MNPDRALMPDYLRLIALFGIVVVNVQFFAYSISISDETAPAVSIADQITKFLVEGLATLKSYGLFSFMFGVGLGFLMASAERRSIDFGPLYRRRMIGLLILGFLHGTLFFYGDILFIYGLMGSLLYLMRNWSVRRLTRMGTILLVASVGIGSLLMLGEGGIPQEFLDLEAVVMTEGSFFDVFLFRSVSFAIVVFLLIFIQGIAALGWFCLGLAAVKAGIIDQPDHPIWAKARSIALIPSVALSLIGAGMTVWGDMTVGQFIVAAAAPLATLGYLGLIAQLSRHPGPITQKLLAVGGSSLSIYLGQSILLSLIFAPYGLGLWEQVGLATAELIAVSVTIALIMALSLWRLKFRLGPFEWVLRRFTYGRAQKNGAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PJR4</accession>
    <name>A0A1M5PJR4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">L-lactate dehydrogenase (Cytochrome)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1669</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the FMN-dependent alpha-hydroxy acid dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH01739.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900491.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1669"/>
    <dbReference type="EnsemblBacteria" id="SHH01739">
        <property type="protein sequence ID" value="SHH01739"/>
        <property type="gene ID" value="SAMN05444003_1669"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02809">
        <property type="entry name" value="alpha_hydroxyacid_oxid_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012133">
        <property type="entry name" value="Alpha-hydoxy_acid_DH_FMN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000262">
        <property type="entry name" value="FMN-dep_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037396">
        <property type="entry name" value="FMN_HAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008259">
        <property type="entry name" value="FMN_hydac_DH_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01070">
        <property type="entry name" value="FMN_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000138">
        <property type="entry name" value="Al-hdrx_acd_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00557">
        <property type="entry name" value="FMN_HYDROXY_ACID_DH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51349">
        <property type="entry name" value="FMN_HYDROXY_ACID_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0288">FMN</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FMN hydroxy acid dehydrogenase" evidence="6">
        <location>
            <begin position="1"/>
            <end position="381"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="4">
        <location>
            <position position="276"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="25"/>
        </location>
        <ligand>
            <name>glyoxylate</name>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="78"/>
            <end position="80"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="107"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="128"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="130"/>
        </location>
        <ligand>
            <name>glyoxylate</name>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="156"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="165"/>
        </location>
        <ligand>
            <name>glyoxylate</name>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="252"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="274"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="276"/>
        </location>
        <ligand>
            <name>glyoxylate</name>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="279"/>
        </location>
        <ligand>
            <name>glyoxylate</name>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="307"/>
            <end position="311"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="330"/>
            <end position="331"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00024042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000138-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000138-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51349"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH01739.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="387" mass="42868" checksum="27B59E000FBF1348" modified="2017-03-15" version="1">MPIITNIDDLKRLHKRRAPKMFFDYAESGSWTEQTFRENTSDFDKIRFRQRVAVDMTNRTTKGSLLGTDYEMPVALAPVGLTGMQNADGEIKAARAAEKFGVPYCLSTMSICSIEDIRQNTSAPFWFQLYVMRDEDFVDNIIQRAKNAGCSALVITVDLQILGQRHKDLKNGLTAPPKLTPKTLLNLSTKWSWGLEMLGTHRRTFRNIVGHAKSVENMSSLHSWTAEQFDPALNWETIAKLKENWGGKVIIKGILDPEDAKEAVKAGADAIIVSNHGGRQLDGALSSIRMLPKIVEAVGGQIEIHLDSGIRSGQDVLKALAMGADGVMIGRAYIYGLGAMGEKGVTTALDIIQKELDTTMALCGKRNISDIDRDILLVPEDFEGRWT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PKF3</accession>
    <name>A0A1M5PKF3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">S-adenosylmethionine synthase</fullName>
            <shortName evidence="11">AdoMet synthase</shortName>
            <ecNumber evidence="11">2.5.1.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">MAT</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">Methionine adenosyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">metK</name>
        <name evidence="17" type="ORF">SAMN05444003_1697</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>ATP + H2O + L-methionine = diphosphate + phosphate + S-adenosyl-L-methionine</text>
            <dbReference type="Rhea" id="RHEA:21080"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="EC" id="2.5.1.6"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </cofactor>
        <text evidence="11">Binds 1 potassium ion per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="11">Binds 2 divalent ions per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 11">Amino-acid biosynthesis; S-adenosyl-L-methionine biosynthesis; S-adenosyl-L-methionine from L-methionine: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="11">Homotetramer; dimer of dimers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11 12">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 11 13">Belongs to the AdoMet synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.6" evidence="11"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02296.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900513.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1697"/>
    <dbReference type="EnsemblBacteria" id="SHH02296">
        <property type="protein sequence ID" value="SHH02296"/>
        <property type="gene ID" value="SAMN05444003_1697"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00315">
        <property type="reaction ID" value="UER00080"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004478">
        <property type="term" value="F:methionine adenosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006730">
        <property type="term" value="P:one-carbon metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006556">
        <property type="term" value="P:S-adenosylmethionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00086">
        <property type="entry name" value="S_AdoMet_synth1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022631">
        <property type="entry name" value="ADOMET_SYNTHASE_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022630">
        <property type="entry name" value="S-AdoMet_synt_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022629">
        <property type="entry name" value="S-AdoMet_synt_central"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022628">
        <property type="entry name" value="S-AdoMet_synt_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002133">
        <property type="entry name" value="S-AdoMet_synthetase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022636">
        <property type="entry name" value="S-AdoMet_synthetase_sfam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11964">
        <property type="entry name" value="PTHR11964"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02773">
        <property type="entry name" value="S-AdoMet_synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02772">
        <property type="entry name" value="S-AdoMet_synt_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00438">
        <property type="entry name" value="S-AdoMet_synt_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000497">
        <property type="entry name" value="MAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55973">
        <property type="entry name" value="SSF55973"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01034">
        <property type="entry name" value="metK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00376">
        <property type="entry name" value="ADOMET_SYNTHASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00377">
        <property type="entry name" value="ADOMET_SYNTHASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 11 12" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6 11 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 11" id="KW-0554">One-carbon metabolism</keyword>
    <keyword evidence="10 11 12" id="KW-0630">Potassium</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 11 17" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="S-AdoMet_synt_N" evidence="14">
        <location>
            <begin position="5"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="domain" description="S-AdoMet_synt_M" evidence="15">
        <location>
            <begin position="122"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="domain" description="S-AdoMet_synt_C" evidence="16">
        <location>
            <begin position="240"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="region of interest" description="Flexible loop" evidence="11">
        <location>
            <begin position="106"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="17"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="19"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="45"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="58"/>
        </location>
        <ligand>
            <name>L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="106"/>
        </location>
        <ligand>
            <name>L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="171"/>
            <end position="173"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="246"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="252"/>
            <end position="253"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="269"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <note>ligand shared between two neighboring subunits</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="273"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <note>ligand shared between two neighboring subunits</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="277"/>
        </location>
        <ligand>
            <name>L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00086"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU000542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU004462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF00438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF02772"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF02773"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="SHH02296.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="393" mass="42453" checksum="601FE5FF71211368" modified="2017-03-15" version="1">MTRQNYIFTSESVSEGHPDKVCDRISDAILDAFLSEEPEARVACETFATTNRVVVGGEVGLSDPEKLKSYMGRVEDIARACIKDIGYEQDKFHHATCEITNLLHEQSAHIAQGVDAGEDKDEGAGDQGIMFGYATTETDALMPAPIQYSHAILRRLAEVRKSGQEPTLRPDAKSQVSLRYENGVPVEVMSIVLSTQHASEDQTSDDIRAIVEPYIREVLPSGLITEATEWWVNPTGTFVIGGPDGDAGLTGRKIIVDTYGGAAPHGGGAFSGKDPTKVDRSAAYASRYLAKNVVAAGMADRCTIQLSYAIGVAKPLSIYADTYGTGEVDPAAIEKAIADVMDLTPRGIRQHLGLNKPIYERTAAYGHFGRDPEADGGFSWERTDLVDALKKAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PLD8</accession>
    <name>A0A1M5PLD8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">LapA_dom domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_1686</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02073.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900505.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1686"/>
    <dbReference type="EnsemblBacteria" id="SHH02073">
        <property type="protein sequence ID" value="SHH02073"/>
        <property type="gene ID" value="SAMN05444003_1686"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010445">
        <property type="entry name" value="LapA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06305">
        <property type="entry name" value="LapA_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="48"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="domain" description="LapA_dom" evidence="7">
        <location>
            <begin position="46"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="5">
        <location>
            <begin position="80"/>
            <end position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF06305"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH02073.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="118" mass="13205" checksum="1A54031908077E58" modified="2017-03-15" version="1">MKAIRYGFWAIVGLCLIFVGIANREFVTVKAMPTAFADFLSISPTIELPLFVVIMLSVGVGLLIGFLWEWVREHRLRSDGRAKAREADQLRKEVDELKKAKASAEGDEILALLDSPTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PLT1</accession>
    <name>A0A1M5PLT1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">N-acetyltransferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1721</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02765.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH02765">
        <property type="protein sequence ID" value="SHH02765"/>
        <property type="gene ID" value="SAMN05444003_1721"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="34"/>
            <end position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00583"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH02765.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="101" mass="10985" checksum="0629697EDE54C192" modified="2017-03-15" version="1">MSDKIRCVEIGPDNLDLLLSVPEGIFDGPVRPDQAKAFVEDTGHLLVLALEAEKTVGFASAVINLHPDKDPILFVSEVGVIESHRRQGIARQHHEPNVQAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PM11</accession>
    <name>A0A1M5PM11_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Enoyl-[acyl-carrier-protein] reductase [NADH]</fullName>
            <ecNumber evidence="7">1.3.1.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_1712</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>a 2,3-saturated acyl-[ACP] + NAD(+) = a (2E)-enoyl-[ACP] + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:10240"/>
            <dbReference type="Rhea" id="RHEA-COMP:9925"/>
            <dbReference type="Rhea" id="RHEA-COMP:9926"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:78784"/>
            <dbReference type="ChEBI" id="CHEBI:78785"/>
            <dbReference type="EC" id="1.3.1.9"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Lipid metabolism; fatty acid biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the short-chain dehydrogenases/reductases (SDR) family. FabI subfamily.</text>
    </comment>
    <dbReference type="EC" id="1.3.1.9" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02589.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900528.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1712"/>
    <dbReference type="EnsemblBacteria" id="SHH02589">
        <property type="protein sequence ID" value="SHH02589"/>
        <property type="gene ID" value="SAMN05444003_1712"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00094"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004318">
        <property type="term" value="F:enoyl-[acyl-carrier-protein] reductase (NADH) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016631">
        <property type="term" value="F:enoyl-[acyl-carrier-protein] reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd05372">
        <property type="entry name" value="ENR_SDR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014358">
        <property type="entry name" value="Enoyl-ACP_Rdtase_NADH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43159">
        <property type="entry name" value="PTHR43159"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000094">
        <property type="entry name" value="Enoyl-ACP_rdct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="6 7" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="7" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="6 7" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="5 7 9" id="KW-0520">NAD</keyword>
    <keyword evidence="4 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="8">
        <location>
            <position position="146"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="8">
        <location>
            <position position="156"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="14"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="20"/>
            <end position="21"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="41"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="65"/>
            <end position="66"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="93"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="163"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009233"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRNR" id="PIRNR000094"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000094-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000094-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH02589.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="262" mass="27594" checksum="07205CC72490ECF0" modified="2017-03-15" version="1">MTLSMQGKRGLVMGVANNRSIAWGIAKAMADAGAELAFTYQGAAFGERLKPLAESVGSDIMVDVDVTDDASMDLAFNTLKEKWGSLDFVVHAIAYSDKDELTGRFSDTSRENFKNSLSISCYSFIDVAKRASEIMPNGGTLLTLTYQGSNRVTPFYNVMGVAKAALESATRYLANDLGPQGIRVNAISPGPMKTLAGAAIGGARKTYKHTGQNAPLGDNATLEAVGGTAVYLASDAGACTTGEIIRVDGGFHVLGMPQPDHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PSB5</accession>
    <name>A0A1M5PSB5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Lytic murein transglycosylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1812</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04560.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900610.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1812"/>
    <dbReference type="EnsemblBacteria" id="SHH04560">
        <property type="protein sequence ID" value="SHH04560"/>
        <property type="gene ID" value="SAMN05444003_1812"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.101.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023346">
        <property type="entry name" value="Lysozyme-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043426">
        <property type="entry name" value="MltB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011970">
        <property type="entry name" value="MltB_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002477">
        <property type="entry name" value="Peptidoglycan-bd-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036365">
        <property type="entry name" value="PGBD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036366">
        <property type="entry name" value="PGBDSf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031304">
        <property type="entry name" value="SLT_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30163">
        <property type="entry name" value="PTHR30163"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01471">
        <property type="entry name" value="PG_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13406">
        <property type="entry name" value="SLT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47090">
        <property type="entry name" value="SSF47090"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53955">
        <property type="entry name" value="SSF53955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02283">
        <property type="entry name" value="MltB_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012522384" evidence="1">
        <location>
            <begin position="19"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="domain" description="SLT_2" evidence="3">
        <location>
            <begin position="27"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="domain" description="PG_binding_1" evidence="2">
        <location>
            <begin position="333"/>
            <end position="389"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13406"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH04560.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="389" mass="42175" checksum="23180420332F322D" modified="2017-03-15" version="1">MKRALALALALTAGKATAQTCGGSVSDFIAGVSEEAATRGISAETSRQFFQGSGIDQSVLRADRAQGVFQKDFISFSRALISQNRIDNGRIYGDRFDRTFDRIEAEFGIPRGVLLAFWAFETDFGQVQGNFNTRNALLTLAHDCRRPELFRPQLIAAIELFERGEFDPATTTGAWAGEIGQVQMLPQDIIDHGMDGDGDGRVDLKGSSPDALMSGANVLSSLGWRPNEPWLQEIRVPSDLDWSITGLNKKRPVSEWADLGITPREGALGPSDLEAAVLLPLGRNGPAFLAYPNFDVYFEWNKSLVYVTTAAYFGTRLMGAPVYDAGNPSAALSGEEIKALQTKLEARGFDVGGIDGILGAKTRDAVQTEQQRLGLPADAWPTKDLLNAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PSQ0</accession>
    <name>A0A1M5PSQ0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Catechol 2,3-dioxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1828</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04885.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900881.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1828"/>
    <dbReference type="EnsemblBacteria" id="SHH04885">
        <property type="protein sequence ID" value="SHH04885"/>
        <property type="gene ID" value="SAMN05444003_1828"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004360">
        <property type="entry name" value="Glyas_Fos-R_dOase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00903">
        <property type="entry name" value="Glyoxalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="6"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH04885.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="131" mass="14129" checksum="B077199874CDC410" modified="2017-03-15" version="1">MPKLTSLDHLVLTVADIDRTVAFYEQVLGMKVEVFHPSDGSTRTALTFGAQKINLHPAAKPFEPKADRPMPGSADLCFLSDTPLAEWQAHFEVSGVDVLEGPVGRTGATGPIVSLYLRDPDGNLIEVSNRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PT32</accession>
    <name>A0A1M5PT32_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1835</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05024.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900630.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH05024">
        <property type="protein sequence ID" value="SHH05024"/>
        <property type="gene ID" value="SAMN05444003_1835"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012657721" evidence="1">
        <location>
            <begin position="23"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH05024.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="109" mass="11230" checksum="D26C7B5BCFCA353D" modified="2017-03-15" version="1">MSIKMIALAAATVAATASAASADSYFGFEDRLENSSTLELGTVRAAADGVVEIYDGRFGNLGALLGTEEVAAGANKDVRVNVGHGPDADVIAVLKIDGQIVAQQEYEID</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PXC2</accession>
    <name>A0A1M5PXC2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized conserved protein, NAD-dependent epimerase/dehydratase family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1907</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06468.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900691.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1907"/>
    <dbReference type="EnsemblBacteria" id="SHH06468">
        <property type="protein sequence ID" value="SHH06468"/>
        <property type="gene ID" value="SAMN05444003_1907"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035402">
        <property type="entry name" value="DUF1611-N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035086">
        <property type="entry name" value="DUF1611_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011669">
        <property type="entry name" value="UCP026760"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40690">
        <property type="entry name" value="PTHR40690"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07755">
        <property type="entry name" value="DUF1611"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17396">
        <property type="entry name" value="DUF1611_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF026760">
        <property type="entry name" value="UCP026760"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1611_N" evidence="2">
        <location>
            <begin position="42"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="domain" description="DUF1611" evidence="1">
        <location>
            <begin position="130"/>
            <end position="327"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17396"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH06468.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="333" mass="35638" checksum="71B4838F85A051B1" modified="2017-03-15" version="1">MIKTPYLLFLGDAPDQLAAKVAQGIKDWRPENAVGQFRMDGCGADVGIQDMTLEEAKAAGAQTLVIGVANRGGVISDAWKEVLLQAIDIGYDLASGLHNLLRDEADLVAAAEAKGAQLHDVRVPSVEYLIANGKKRTGKRCLAVGTDCSVGKMYTGMAMDAEMRKRGMKSTFRPTGQTGILITGEGVPLDAVVADFMAGAVEYLTPDNDEDHWDHIEGQGSLFHVSYSGVTMALVHGGQPDALVLAHEPTRAHMRGLPDYQQPDLVDLRDMALALAKVANPTCQVIGISVNTQHLSDDEFEGYLAKVEEEMGLPTVDPFRQGAGRLVDALAAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PY19</accession>
    <name>A0A1M5PY19_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Leucyl aminopeptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1901</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase M17 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06359.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900889.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1901"/>
    <dbReference type="EnsemblBacteria" id="SHH06359">
        <property type="protein sequence ID" value="SHH06359"/>
        <property type="gene ID" value="SAMN05444003_1901"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030145">
        <property type="term" value="F:manganese ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070006">
        <property type="term" value="F:metalloaminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00433">
        <property type="entry name" value="Peptidase_M17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011356">
        <property type="entry name" value="Leucine_aapep/pepB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043472">
        <property type="entry name" value="Macro_dom-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000819">
        <property type="entry name" value="Peptidase_M17_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11963">
        <property type="entry name" value="PTHR11963"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00883">
        <property type="entry name" value="Peptidase_M17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00481">
        <property type="entry name" value="LAMNOPPTDASE"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00631">
        <property type="entry name" value="CYTOSOL_AP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 7" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0464">Manganese</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CYTOSOL_AP" evidence="6">
        <location>
            <begin position="304"/>
            <end position="311"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS00631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH06359.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="455" mass="47532" checksum="0456910A79908A67" modified="2017-03-15" version="1">MTAKFATPTHTAIPIYVVPKGDISAAPESAQAWAANTGFEGALGKTLLVPGADGQTDCALIGSGTAAAQARSRFALGGGSKSLPDGTYQLATDLDDEAANEFALAWLLSAYSFTRYAGTPTTHPNLIAPTGVNAQALEAIAEGECLTRDLINTPASDMGPVELANSASELAQRHGATISIIEGDDLIAQNFPMIHTVGRASISPPRLIDMRWGDSGPKLTLVGKGVCFDTGGLNIKPGGSMGLMKKDMGGAATVLGLAHMIMATKMPIQLRVLIPAVENSIDGNAFRPQDILTSRKGLTVEINNTDAEGRLVLADALTYADEDSPDLVISMATLTGAARVAVGPDLSPFYTDHDADASALAESAAKVADPVWRMPFHDPYESMIEPGIADLDNAPKGGFAGSITAALFLRRFVDARYMHFDIYGWQPSSAPARPKGGVGMGARAVLDALPKMLNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q164</accession>
    <name>A0A1M5Q164_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">EAL domain, c-di-GMP-specific phosphodiesterase class I (Or its enzymatically inactive variant)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1961</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07459.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1961"/>
    <dbReference type="EnsemblBacteria" id="SHH07459">
        <property type="protein sequence ID" value="SHH07459"/>
        <property type="gene ID" value="SAMN05444003_1961"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01948">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001633">
        <property type="entry name" value="EAL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035919">
        <property type="entry name" value="EAL_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00563">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00052">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141868">
        <property type="entry name" value="SSF141868"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50883">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="EAL" evidence="2">
        <location>
            <begin position="30"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH07459.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="270" mass="29958" checksum="231C8DE4AFC10073" modified="2017-03-15" version="1">MSQVLSMDLSPQSTEPTGSDPLSFAFASRDADILELVRSALAAGRAQLAYQPAVIAGTPKRIAFHETLIRVSDECGRVIPAAHFMPIIEETDLGRQIDAASLELAMKMLKHQPRVRLSVNVSARSLADWDWRRQLELGLASGISLRDHLIFEISETSAMQLHEVVIRFMEEMHPKGLSFALDGFGGGQTSFRHLRDFFFDFAKIDKSFVKDVHQDPNNQVLVEALITVAHQFEMFAVADGVEAAEDARFLQATGIDCMQGFHFGVPKPSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q2I0</accession>
    <name>A0A1M5Q2I0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2005</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08284.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2005"/>
    <dbReference type="EnsemblBacteria" id="SHH08284">
        <property type="protein sequence ID" value="SHH08284"/>
        <property type="gene ID" value="SAMN05444003_2005"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012160684" evidence="1">
        <location>
            <begin position="20"/>
            <end position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH08284.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="206" mass="21482" checksum="B086FB9A3135D380" modified="2017-03-15" version="1">MRPYLVALCLSVTPTLLQSAEVGQAAIDGCIDQLRVVGGADGQSGTVLSREYSEANSLVMLQDSGDTIWRCLVANDGVVAELSVVDGSAASDVMALSDGLPIVSGDRRVQFASGESGTVMSTTLNPETSVRYLLGAADGQFLRVDVGSRGGALDYKIFNPDGSLLLDLISSDTPYQGQLWQSGDHVVEVVNAGAQPVTFDIGIGIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QJ81</accession>
    <name>A0A1M5QJ81_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Zinc/manganese transport system ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2143</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH13916.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900951.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2143"/>
    <dbReference type="EnsemblBacteria" id="SHH13916">
        <property type="protein sequence ID" value="SHH13916"/>
        <property type="gene ID" value="SAMN05444003_2143"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="5"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="37"/>
            <end position="44"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH13916.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="247" mass="26902" checksum="3BE14BCBB71BA9E8" modified="2017-03-15" version="1">MTASVAFQNLTLGYDRHPAVHHLDTEISEGSLTAIVGPNGAGKSTLLKGMMGSLSPLEGTIDFSGFEREEIAYLPQQSEIDRSFPISVLDLVSMGLWREIGAFGRLGRARRTQVSDAIAAVGLTGFEKRPIGSLSGGQMQRALFARLLLQDAKLVLLDEPFTAIDAKTMRDLVEIIENWHSEGRTVLAVLHDYELVGSHFPQTLMLARELVAHGPTNTVLTAENRFRARQMCEACNSTPHICGKSAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QLB9</accession>
    <name>A0A1M5QLB9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Ribosome maturation factor RimP</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rimP</name>
        <name evidence="6" type="ORF">SAMN05444003_2185</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Required for maturation of 30S ribosomal subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the RimP family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14788.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2185"/>
    <dbReference type="EnsemblBacteria" id="SHH14788">
        <property type="protein sequence ID" value="SHH14788"/>
        <property type="gene ID" value="SAMN05444003_2185"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042274">
        <property type="term" value="P:ribosomal small subunit biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01734">
        <property type="entry name" value="YlxS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01077">
        <property type="entry name" value="RimP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003728">
        <property type="entry name" value="Ribosome_maturation_RimP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028998">
        <property type="entry name" value="RimP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036847">
        <property type="entry name" value="RimP_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028989">
        <property type="entry name" value="RimP_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035956">
        <property type="entry name" value="RimP_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33867">
        <property type="entry name" value="PTHR33867"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02576">
        <property type="entry name" value="DUF150"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17384">
        <property type="entry name" value="DUF150_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74942">
        <property type="entry name" value="SSF74942"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75420">
        <property type="entry name" value="SSF75420"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0690">Ribosome biogenesis</keyword>
    <feature type="domain" description="DUF150" evidence="4">
        <location>
            <begin position="48"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="DUF150_C" evidence="5">
        <location>
            <begin position="123"/>
            <end position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF17384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH14788.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="222" mass="24595" checksum="649FBDFB1288D620" modified="2017-03-15" version="1">MTCNSGALGSKPNAHRKTTTGRAPVFLCVKDMNDLIAKAAIDRRVTEIIAPVIEDMGYEVVRVRLMSGKDTVLQIMAQKPDGTIEVDDCAEISTAVSAVLDVEDPILDQYNLEVSSPGIDRPLTRLKDFAQWEGFEAKIETDELIDGRRRFKGQLAGVEGDEVLITIAEGTIGLKFEWLSDAKLVLTDDLIRDVLRGRKDKGQIDEEQFDEIETIIDGEEKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QPW3</accession>
    <name>A0A1M5QPW3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MurNAc alpha-1-phosphate uridylyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2243</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2243"/>
    <dbReference type="EnsemblBacteria" id="SHH15978">
        <property type="protein sequence ID" value="SHH15978"/>
        <property type="gene ID" value="SAMN05444003_2243"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025877">
        <property type="entry name" value="MobA-like_NTP_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12804">
        <property type="entry name" value="NTP_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="NTP_transf_3" evidence="1">
        <location>
            <begin position="11"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12804"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH15978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="233" mass="25370" checksum="DDB654A6E42BCD60" modified="2017-03-15" version="1">MGDQKLNIPMLIYAAGMGTRMRELTKDQPKPLIKVAGRALIDHAMDAAASEHISKIVVNTQFKASQIHTHPFERPVLFSDETQLLETGGGLKNALPLLDSEVTATLNSDAVWSGSNPTRFALSHWHSSMAALLLVAEKSTVVGHKGSGDFDMTADGRLIRGSRYIFTGLQITQTALYAEMNAKKFSSNVIWDQQILDGTLFGAVYPGHWCDVGYPEAIPLAEDMLNGIIASDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QQZ8</accession>
    <name>A0A1M5QQZ8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2263</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16346.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901138.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH16346">
        <property type="protein sequence ID" value="SHH16346"/>
        <property type="gene ID" value="SAMN05444003_2263"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005590">
        <property type="entry name" value="DUF333"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03891">
        <property type="entry name" value="DUF333"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013042149" evidence="1">
        <location>
            <begin position="21"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH16346.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="126" mass="13905" checksum="843A78EF21C9FCCC" modified="2017-03-15" version="1">MKTLFIVLTGFVLSAGASSAQQQIANPAAVFCIEQGGDYEIVQEAEGARGDCILADGTRIDAWQFYRESQVVDTPRQRMANPAAVFCVEQGGAYRIVTSDSGDQYGECVIMVERVVDAWQFYRENH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QSG5</accession>
    <name>A0A1M5QSG5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2288</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16841.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901175.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2288"/>
    <dbReference type="EnsemblBacteria" id="SHH16841">
        <property type="protein sequence ID" value="SHH16841"/>
        <property type="gene ID" value="SAMN05444003_2288"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="15"/>
            <end position="350"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH16841.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="487" mass="53316" checksum="D51019BEB302BCD3" modified="2017-03-15" version="1">MDEISEVHIGQRILEHAGSYPDAPCVEFEGRVTTRFEFVARASTLRKLLLRFGIAKGDTVAILCTTAGRGLECALALWDLRARVVFLDPRQSAADMSAICDAAQVKFKFSDLPTFQRRSDFEAIPRDIAPSETLLSFSACRPEDDAIVFTSSGTTGVPKVRGVTHSRLAVGIANLETTIGLGAELSLFRLMIGNLSFSAMSFAWIRWLFLGAPIIDLFSFYLTKDVYKNLSREDLGVASLSPAALRELINYHVVDLKSRIEPAFPHLKQLRTVGGPVSGRDLRRAFEILTPNIESSYSLSGIGPISRLSGGEALQKGGSVGRPFDSIVVRIIGPNGQATPAGGIGHVFAKNTLHPNAVEIETGDLGYIDEDGFLFLTGRTEQNAIRHSININLADLESDIRSLQGISDCIAFAIADPETGDDVVFLAVESEISRTVVRTLIRRSLSSYRRPDRIYVRRKLPRNAAEKISLRELKALVEVSGDTFVSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QTM6</accession>
    <name>A0A1M5QTM6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Putrescine transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2314</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17445.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901221.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2314"/>
    <dbReference type="EnsemblBacteria" id="SHH17445">
        <property type="protein sequence ID" value="SHH17445"/>
        <property type="gene ID" value="SAMN05444003_2314"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="7"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="76"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="112"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="166"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="205"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="265"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="77"/>
            <end position="283"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH17445.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="295" mass="33269" checksum="4436A1901C182618" modified="2017-03-15" version="1">MRRLLIAIPYIWLLLLFLVPFGIVLKISLSDYALSIPPYTPQLDLSTGWQGFAEFWSQLDMENYWFLTDDDLYWKAYLSSLQIAALSTFFTLLVGFPIAYGMANAPEHWRPTLMLLIILPFWTSFLIRVYAWIGILSNEGFLNQFLLAIGLISAPIKILNTDIAVYIGITYTYLPFMVLPIYATLEKLDGSLLEAAEDLGCTRLQAFWAVTVPLSKPGVIAGCFLVFIPALGEFVIPSLLGGSDTLMIGKVLWEEFFSNRDWPVASAVAIILLLILVIPIILFQRNEQKQREAGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-09-29" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QTT8</accession>
    <name>A0A1M5QTT8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2301</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH17129">
        <property type="protein sequence ID" value="SHH17129"/>
        <property type="gene ID" value="SAMN05444003_2301"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH17129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="290" mass="33395" checksum="ACA00A85C0670951" modified="2017-03-15" version="1">MPFEFSSAQQVLWLGAHKTGTTYLQGMLDATAGRLEDAQIVFEPLNSFRDSYTRPLLHRGFVSRPAPASEFRRGAAQTILFDENIPGLVQNAVSPKIGLYPMMEIRVRKVINYLDYHPDLIVFGIRNLVGYLPSLYCEMLKSTPFQTFEHFMKRVPPQLQWYWLAKRMASMFPDVPLVLYRAEDLRGNERALLSALTGLPASVFEENAQKERSGFSKKTIRRLKKLSETQEVTRSDVFRMNRRFPKSAENPGFDPFGDIRRERFNKLYEKDLVEIAADPNMTLLDFANLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QWG6</accession>
    <name>A0A1M5QWG6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Glyco_trans_2-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2364</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18494.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901306.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2364"/>
    <dbReference type="EnsemblBacteria" id="SHH18494">
        <property type="protein sequence ID" value="SHH18494"/>
        <property type="gene ID" value="SAMN05444003_2364"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="268"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_trans_2-like" evidence="2">
        <location>
            <begin position="19"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH18494.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="325" mass="36528" checksum="B0E63F9D02FE5D58" modified="2017-03-15" version="1">MGKKLRFKCVVSIINFRTGPMTIDCVRSVLSDIGDLDIHIVVVDNASGDGSDKEIEDWIASQQHNIPVTLVRSTDNSGFSGGHNLGMSVFDADYFLILNSDALLRPGFFKAILPVVDESEKVGLFAPQIIDQEGTPETSCFRFASPQSEFIRSACTGFVTRVLKSHEVALGPYPDSREIEWASFACILLKAQMVEEIGFMDQGYFLYFEDSEYALRAQRNGWGIEQVVDAKAVHFRGGSGPVKSLAKAKKRLPPYYYASRTRFFYQRYGAFGLLLANLAYILGRFVAQFRRLVGKPVYKMAQSEIKDIWLNFFDPLGPHPRSWSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QX98</accession>
    <name>A0A1M5QX98_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Sulfotransferase domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2365</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18506.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901505.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2365"/>
    <dbReference type="EnsemblBacteria" id="SHH18506">
        <property type="protein sequence ID" value="SHH18506"/>
        <property type="gene ID" value="SAMN05444003_2365"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008146">
        <property type="term" value="F:sulfotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037359">
        <property type="entry name" value="NST/OST"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000863">
        <property type="entry name" value="Sulfotransferase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10605">
        <property type="entry name" value="PTHR10605"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00685">
        <property type="entry name" value="Sulfotransfer_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Sulfotransfer_1" evidence="2">
        <location>
            <begin position="7"/>
            <end position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH18506.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="282" mass="32247" checksum="C6CC568F03C7DCEF" modified="2017-03-15" version="1">MNQRLPSFFIIGAMKCGTSTLQTQLSMQNGIFMCEPKEPNFFSDDGIFAKGIDWYKGLFETAQEADLLGEASTHYTKLPNHPHTIPRLQNAVLKPRFVYMIRNPVARSVSHFIHEWSQGVLSDDLEKAFTSNPELVDYGRYGMQIRPWIETFGKESVFLTSLEQIKADPQGELSAICSHIGFEGDLSWQEDIEAQNVSSERVRKFPLHSLLVDHPISAKLRRTLVPKSLRDRVKASRQMSERPTLPPELKQDLEGVFEKDRRQLAALFPEHPALKLCYPFLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QYU7</accession>
    <name>A0A1M5QYU7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">3-hydroxyisobutyrate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2389</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901343.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2389"/>
    <dbReference type="EnsemblBacteria" id="SHH18960">
        <property type="protein sequence ID" value="SHH18960"/>
        <property type="gene ID" value="SAMN05444003_2389"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016054">
        <property type="term" value="P:organic acid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002204">
        <property type="entry name" value="3-OH-isobutyrate_DH-rel_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006115">
        <property type="entry name" value="6PGDH_NADP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015815">
        <property type="entry name" value="HIBADH-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029154">
        <property type="entry name" value="NADP-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14833">
        <property type="entry name" value="NAD_binding_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03446">
        <property type="entry name" value="NAD_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000103">
        <property type="entry name" value="HIBADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00895">
        <property type="entry name" value="3_HYDROXYISOBUT_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD_binding_2" evidence="3">
        <location>
            <begin position="3"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="domain" description="NAD_binding_11" evidence="4">
        <location>
            <begin position="166"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000103-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF14833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH18960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="290" mass="30707" checksum="2872B7EAFDD35533" modified="2017-03-15" version="1">MAKITFLGLGVMGYPMAGHLQAAGHDVTVYNRTTAKAEAWAKEYGGAFALTPAEAVAGADFVMACVGNDDDLRQVCVGENGAFQAMQEGAIFVDHTTVSEAVTKELYAVAEEKGLSFVDAPISGGQAGAENAALSIMCGGDQADYDRAEPVMNVYAKLCRRIGESGAGQLTKMCNQIAIAGVVQGLAEALHFSQKAGLDGRAVVEVISQGAAGSWQMSNRYETMLDDEYNHGFAVDWMRKDLGICLSTADENGASLPLTALVDQFYKDVQKLGGGRWDTSSLLKRLVENG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QZA0</accession>
    <name>A0A1M5QZA0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2403</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19228.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901362.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2403"/>
    <dbReference type="EnsemblBacteria" id="SHH19228">
        <property type="protein sequence ID" value="SHH19228"/>
        <property type="gene ID" value="SAMN05444003_2403"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH19228.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="98" mass="10921" checksum="B14A84D6D8EC1677" modified="2017-03-15" version="1">MGLLTRSKETAPCTVTISHRFEELSAHVRFDNGTTVNPGDSVLVEGPEILAPFGEIVEEQRTAVITRASKLEQLWTRATGDLEFMELCEFSFSEEVMS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QZL7</accession>
    <name>A0A1M5QZL7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Cytochrome c</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2407</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2407"/>
    <dbReference type="EnsemblBacteria" id="SHH19306">
        <property type="protein sequence ID" value="SHH19306"/>
        <property type="gene ID" value="SAMN05444003_2407"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0349">Heme</keyword>
    <keyword evidence="3 4" id="KW-0408">Iron</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012522388" evidence="5">
        <location>
            <begin position="21"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="6">
        <location>
            <begin position="28"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH19306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="146" mass="15667" checksum="B1C618E45F34A7F6" modified="2017-03-15" version="1">MMSTKKLAAVFALAASPAFADGHASTQGDAAAGEEQFNRQCVACHVVANADGEVLAGRNAKVGPNLYGIAGRVIGSVEDFRYGKDIVEVGENGGVWTEEAFVGYVQDPTGWLRETLDNRRARGKMAYQVRDEGQSYDLFAYLASVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RBG1</accession>
    <name>A0A1M5RBG1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Leucine--tRNA ligase</fullName>
            <ecNumber evidence="9">6.1.1.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Leucyl-tRNA synthetase</fullName>
            <shortName evidence="9">LeuRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">leuS</name>
        <name evidence="15" type="ORF">SAMN05444003_2493</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>ATP + L-leucine + tRNA(Leu) = AMP + diphosphate + L-leucyl-tRNA(Leu)</text>
            <dbReference type="Rhea" id="RHEA:11688"/>
            <dbReference type="Rhea" id="RHEA-COMP:9613"/>
            <dbReference type="Rhea" id="RHEA-COMP:9622"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57427"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78494"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.4"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9 10">Belongs to the class-I aminoacyl-tRNA synthetase family.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.4" evidence="9"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23672.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901574.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2493"/>
    <dbReference type="EnsemblBacteria" id="SHH23672">
        <property type="protein sequence ID" value="SHH23672"/>
        <property type="gene ID" value="SAMN05444003_2493"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002161">
        <property type="term" value="F:aminoacyl-tRNA editing activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004823">
        <property type="term" value="F:leucine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006429">
        <property type="term" value="P:leucyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.740.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00049_B">
        <property type="entry name" value="Leu_tRNA_synth_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001412">
        <property type="entry name" value="aa-tRNA-synth_I_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002300">
        <property type="entry name" value="aa-tRNA-synth_Ia"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002302">
        <property type="entry name" value="Leu-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025709">
        <property type="entry name" value="Leu_tRNA-synth_edit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013155">
        <property type="entry name" value="M/V/L/I-tRNA-synth_anticd-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015413">
        <property type="entry name" value="Methionyl/Leucyl_tRNA_Synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009080">
        <property type="entry name" value="tRNAsynth_Ia_anticodon-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009008">
        <property type="entry name" value="Val/Leu/Ile-tRNA-synth_edit"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43740">
        <property type="entry name" value="PTHR43740"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08264">
        <property type="entry name" value="Anticodon_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00133">
        <property type="entry name" value="tRNA-synt_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13603">
        <property type="entry name" value="tRNA-synt_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09334">
        <property type="entry name" value="tRNA-synt_1g"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00985">
        <property type="entry name" value="TRNASYNTHLEU"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47323">
        <property type="entry name" value="SSF47323"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50677">
        <property type="entry name" value="SSF50677"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00396">
        <property type="entry name" value="leuS_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00178">
        <property type="entry name" value="AA_TRNA_LIGASE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9 10" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="6 9 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 9 10" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 9 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7 9 10" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="tRNA-synt_1g" evidence="13">
        <location>
            <begin position="36"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="domain" description="tRNA-synt_1_2" evidence="14">
        <location>
            <begin position="220"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="domain" description="tRNA-synt_1" evidence="11">
        <location>
            <begin position="422"/>
            <end position="578"/>
        </location>
    </feature>
    <feature type="domain" description="tRNA-synt_1" evidence="11">
        <location>
            <begin position="616"/>
            <end position="655"/>
        </location>
    </feature>
    <feature type="domain" description="Anticodon_1" evidence="12">
        <location>
            <begin position="688"/>
            <end position="806"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region" evidence="9">
        <location>
            <begin position="41"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="9">
        <location>
            <begin position="616"/>
            <end position="620"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="619"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU363035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF08264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF09334"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF13603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="SHH23672.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="844" mass="94546" checksum="CA46AAC5C1487C3B" modified="2017-03-15" version="1">MSTYTPSEIEPKWQDAWDAAETFKATRSDDKPKYYVLEMFPYPSGRIHMGHVRNYTMGDVIARYKISTGHNVLHPMGWDAFGMPAENAAMASGGHPKDWTYQNIEDMKAQMKPMGWSLDWNREFATCDPEYYGQQQAMFLDMWEKGLVYRKNAVVNWDPVDMTVLANEQVIDGKGWRSGADVERRELTQWFFKISDYSEELLDGLDGLENWPAKVRLMQENWIGKSRGLQFSFARTDGGDPIEVYTTRPDTLNGASFVGISPDHPLAKELAENNPEVAAFRAECAKGGTTAEELETGEKLGFDTGLTVQHPLNPDWHLPIWIANFILMDYGTGAIFACPAHDQRDLDFCRKYDLPVIDTFFALDDDTPVAIEAFVPPKDQVVRWVDHFAGLSEATGQEAIDATIDFAEKAGWGQGKTQFRLRDWGLSRQRYWGCPIPVVHCDSCGVVPEKKENLPIRLPDDVSFDQPGNPLDRHDTWRQVQCPKCGNAARRETDTMDTFVDSSWYYARFTAPWADTPTVAEEAEYWMNVDQYIGGIEHAILHLLYSRFFARAMNVTGHLPASASEPFDALFTQGMVTHEIYQTRDDQNRPVYHLPKDVTDGKLADGSEVEIIPSAKMSKSKKNVVDPVNIISAYGADTARWFVLSDSPPERDVEWTASGADAAFKFLNRIHRMATEIAALDGGAGADDEELLRAMHKAIQDVTNGVESFGFNAAIAKLYAYANVVQKAKAGGDAKRQAMVTLAHLMSPFTPHLSEEIWQMFGGEGLIANTPWPFADEAMLVEDTVTLPIQVNGKRRSEIAVAKDLAKEEIEKLALEQEGVVRALDGATPKKIIVVPGRIVNIVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RGB2</accession>
    <name>A0A1M5RGB2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sugar phosphate isomerase/epimerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2577</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25392.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901699.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2577"/>
    <dbReference type="EnsemblBacteria" id="SHH25392">
        <property type="protein sequence ID" value="SHH25392"/>
        <property type="gene ID" value="SAMN05444003_2577"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AP_endonuc_2" evidence="1">
        <location>
            <begin position="23"/>
            <end position="226"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH25392.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="246" mass="26914" checksum="C9BDCDB931AD1C8D" modified="2017-03-15" version="1">MPHIAYQLYCSRNFPPLAETCKMLSEAGYSNVEGFGGLFGDLPTLEAALKDNGLRMTSSHIGLDMLENDPAKILEIASTFGTQKMFVPFVMPDDRPNDDAGWRAFGKRLEAAGKPVKDAGVAFGWHNHDFEFVATESGAMPMDLIAEADIDLELDLGWVARAGLDPVEWINKYAGRIKAVHVKDIAPTGEATDEDGWADVGHGTLDWGSIHAALHHAGIDRYVVEHDNPSDDKRFATRSITSINAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RGT9</accession>
    <name>A0A1M5RGT9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2581</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901705.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2581"/>
    <dbReference type="EnsemblBacteria" id="SHH25474">
        <property type="protein sequence ID" value="SHH25474"/>
        <property type="gene ID" value="SAMN05444003_2581"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038696">
        <property type="entry name" value="IalB_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010642">
        <property type="entry name" value="Invasion_prot_B"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06776">
        <property type="entry name" value="IalB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009913460" evidence="1">
        <location>
            <begin position="21"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH25474.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="177" mass="18739" checksum="26FB464FF6E691B6" modified="2017-03-15" version="1">MMKSILGAMGIAVLASAASAQETSDNRVAANTDWSVFVENNPTECWAVSAPKESRLTDSDGNPTTGRRSDMLLFVFYRPGADVSAQVAFTGGYPFASGSTVTMDIGGTEYTLFTDASEPEYAWPATPDEDAKIVAAMKRGANAIVRGRSGRGNVTTDTFSLLGFSAAVEEAQKRCQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RHT5</accession>
    <name>A0A1M5RHT5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">SLT_4 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2597</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25811.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901729.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2597"/>
    <dbReference type="EnsemblBacteria" id="SHH25811">
        <property type="protein sequence ID" value="SHH25811"/>
        <property type="gene ID" value="SAMN05444003_2597"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023346">
        <property type="entry name" value="Lysozyme-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045795">
        <property type="entry name" value="SLT_4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19489">
        <property type="entry name" value="SLT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53955">
        <property type="entry name" value="SSF53955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SLT_4" evidence="1">
        <location>
            <begin position="8"/>
            <end position="191"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF19489"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH25811.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="194" mass="22269" checksum="54F597C43427B74C" modified="2017-03-15" version="1">MSIFFRTLGLLLILGSCSTRYGDAPRNLDNACSILDERPRYERAFKRVERDWGVPMPILMAIIYQESKFISDNRPPHRYVLGVIPTGRQSSALGYSQALNGTWAEYQREEGGRGADRTDIFDAADFMGWYMNLTVEETGVALNDTRNQYLAYHDGRAGFNRGTWRSKRWLIRIASEVEARAVLYDTQLRRCGKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RIH3</accession>
    <name>A0A1M5RIH3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized conserved protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2604</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the Gfa family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25956.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901742.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2604"/>
    <dbReference type="EnsemblBacteria" id="SHH25956">
        <property type="protein sequence ID" value="SHH25956"/>
        <property type="gene ID" value="SAMN05444003_2604"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016846">
        <property type="term" value="F:carbon-sulfur lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006913">
        <property type="entry name" value="CENP-V/GFA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011057">
        <property type="entry name" value="Mss4-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04828">
        <property type="entry name" value="GFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51316">
        <property type="entry name" value="SSF51316"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51891">
        <property type="entry name" value="CENP_V_GFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CENP-V/GFA" evidence="3">
        <location>
            <begin position="4"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005495"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51891"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH25956.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="129" mass="14350" checksum="3252CD7DB49A323E" modified="2017-03-15" version="1">MEKIKESCECGAVSFEISNPRKKITFCHCSQCRKSSGHYWAATNAKFEDVTFLSDDTLTWYTSSDWAKRGFCSTCGSSLLYRMNDVEGIGIAAGSLEDPTGLKPGKHIFVADKGDYYEIADDIPQIDKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RJW7</accession>
    <name>A0A1M5RJW7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase</fullName>
            <ecNumber evidence="3">2.7.6.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="12">7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">SAMN05444003_2632</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the transfer of pyrophosphate from adenosine triphosphate (ATP) to 6-hydroxymethyl-7,8-dihydropterin, an enzymatic step in folate biosynthesis pathway.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; tetrahydrofolate biosynthesis; 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate from 7,8-dihydroneopterin triphosphate: step 4/4.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the HPPK family.</text>
    </comment>
    <dbReference type="EC" id="2.7.6.3" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26577.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2632"/>
    <dbReference type="EnsemblBacteria" id="SHH26577">
        <property type="protein sequence ID" value="SHH26577"/>
        <property type="gene ID" value="SAMN05444003_2632"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00077">
        <property type="reaction ID" value="UER00155"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003848">
        <property type="term" value="F:2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046656">
        <property type="term" value="P:folic acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046654">
        <property type="term" value="P:tetrahydrofolate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00483">
        <property type="entry name" value="HPPK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.560">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000550">
        <property type="entry name" value="Hppk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035907">
        <property type="entry name" value="Hppk_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01288">
        <property type="entry name" value="HPPK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55083">
        <property type="entry name" value="SSF55083"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01498">
        <property type="entry name" value="folK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00794">
        <property type="entry name" value="HPPK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-0289">Folate biosynthesis</keyword>
    <keyword evidence="7 14" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HPPK" evidence="13">
        <location>
            <begin position="91"/>
            <end position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005051"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013253"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00016218"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00029409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00029766"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00033413"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS00794"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="SHH26577.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="186" mass="20746" checksum="2515C438245138CA" modified="2017-03-15" version="1">MGRALVCAGANATSIWGDPSRTIKKAVEMLKTRLGSDLVLSRLYQTPAFPAGAGQDFVNAAFTFETDLSAHELLSELHQIESDAGRTREVRWGARTLDLDLIAMDQEIAPDAETWTKWENLPLDEQMRLAPEQLILPHPRVHERSFALVPLCDLAPDWHHPILGKTLTTFRDALSPEDLQSVKPLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RNZ3</accession>
    <name>A0A1M5RNZ3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 8">Elongation factor G</fullName>
            <shortName evidence="8">EF-G</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">fusA</name>
        <name evidence="10" type="ORF">SAMN05444003_2686</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7 8">Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 8">Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH27818.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901873.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2686"/>
    <dbReference type="EnsemblBacteria" id="SHH27818">
        <property type="protein sequence ID" value="SHH27818"/>
        <property type="gene ID" value="SAMN05444003_2686"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd16262">
        <property type="entry name" value="EFG_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01434">
        <property type="entry name" value="EFG_mtEFG1_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03713">
        <property type="entry name" value="EFG_mtEFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00054_B">
        <property type="entry name" value="EF_G_EF_2_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041095">
        <property type="entry name" value="EFG_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009022">
        <property type="entry name" value="EFG_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035647">
        <property type="entry name" value="EFG_III/V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035649">
        <property type="entry name" value="EFG_V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000640">
        <property type="entry name" value="EFG_V-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004161">
        <property type="entry name" value="EFTu-like_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031157">
        <property type="entry name" value="G_TR_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004540">
        <property type="entry name" value="Transl_elong_EFG/EF2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005517">
        <property type="entry name" value="Transl_elong_EFG/EF2_IV"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00679">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14492">
        <property type="entry name" value="EFG_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03764">
        <property type="entry name" value="EFG_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03144">
        <property type="entry name" value="GTP_EFTU_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00315">
        <property type="entry name" value="ELONGATNFCT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00838">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00889">
        <property type="entry name" value="EFG_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54980">
        <property type="entry name" value="SSF54980"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00484">
        <property type="entry name" value="EF-G"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00301">
        <property type="entry name" value="G_TR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 8 10" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="6 8" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="3 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 8" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tr-type G" evidence="9">
        <location>
            <begin position="8"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="17"/>
            <end position="24"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="92"/>
            <end position="96"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="146"/>
            <end position="149"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005870"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00017872"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00024731"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH27818.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="705" mass="77799" checksum="87310E9256377440" modified="2017-03-15" version="1">MAREYPLELYRNFGIMAHIDAGKTTCSERILYYTGKEHNIGEVHDGAATMDWMEQEQERGITITSAATTTFWERTEDGTTADTPKHRLNIIDTPGHVDFTIEVERSLAVLDGAVCVLDANAGVEPQTETVWRQADRYKVPRMVFVNKMDKIGADFFNCVNMIEDRTGARAIPVAFPIGAENELEGLVDLVTMEEWLWQGEDLGASWVKAPIRDSLKDQADEWRNKLVEAAVEQDDDAMMEYLEGNEPDVPSLRALVRKGCLSMAFVPVLGGSAFKNKGVQPLLNAVIDYLPSPLDVVDYMGFKPGDETEERNIARRADDDMAFSALAFKIMNDPFVGSLTFTRIYSGTLSKGDTMLNSTKGNKERVGRMMMMHSNDREEIDEAFAGDIIALGGLKNTTTGDTLCAQNDPVVLETMTFPDPVIEIAVEPKTKGDQEKMGIALQRLSAEDPSFRVETDLESGQTIMKGMGELHLDILVDRMKREFKVEANIGAPQVAYRETIGHAVEHSYTHKKQSGGSGQFGEVKLNIIPTEPGEGYSFESLIVGGAVPKEYIPGVEKGIQSVMDSGPLAGFPVIDFKVQLLDGKFHDVDSSVLAFEIAARMCMREGMKKAGAKLLEPIMKVEVITPDEYTGGIIGDLTSRRGQVSGQDTRGNAIAIDAMVPLANMFGYINTLRSMSSGRAQFTMQFDHYDPVPNNISEEIQAKYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RVH4</accession>
    <name>A0A1M5RVH4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">5-dehydro-2-deoxygluconokinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2719</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30295.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2719"/>
    <dbReference type="EnsemblBacteria" id="SHH30295">
        <property type="protein sequence ID" value="SHH30295"/>
        <property type="gene ID" value="SAMN05444003_2719"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016773">
        <property type="term" value="F:phosphotransferase activity, alcohol group as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002173">
        <property type="entry name" value="Carboh/pur_kinase_PfkB_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030830">
        <property type="entry name" value="Myo_inos_IolC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011611">
        <property type="entry name" value="PfkB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00294">
        <property type="entry name" value="PfkB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="SSF53613"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04382">
        <property type="entry name" value="myo_inos_iolC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00584">
        <property type="entry name" value="PFKB_KINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 4" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PfkB" evidence="3">
        <location>
            <begin position="18"/>
            <end position="308"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH30295.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="328" mass="34160" checksum="2731EE7776D4D213" modified="2017-03-15" version="1">MDFDGLINGIKANNFIIVGRVGMDLFTQPGGATEDAEEMMVGMGGSSANIGAGICKLGGKAALVTRVSDDSIGRYCVGQLERYGVDATYVTPVGGEFRSSLAVYESRLEGHQSVIYRNGAADFQMDATDVSAVDYSAFGALITAGTVFAAEPSRAATFKAFDLAKAAGLPIIFDVDYRPYSWPSPKVAEEVLTRAAGVSDMIVGNDEEFGFMAGGIEKGLDKARALSETTAAMVVYKMGHEGAITFAKGEEIRTGIYPVEALKPTGAGDSFMAGLVTSLADGHDLKSSLLRGSACASVTVSRPGCAPAMADTETLEKFLANHPGPTAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RW93</accession>
    <name>A0A1M5RW93_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">YtoQ family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2727</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30470.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901983.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH30470">
        <property type="protein sequence ID" value="SHH30470"/>
        <property type="gene ID" value="SAMN05444003_2727"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019884">
        <property type="entry name" value="YtoQ_family_protein"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11071">
        <property type="entry name" value="Nuc_deoxyri_tr3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03646">
        <property type="entry name" value="YtoQ_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH30470.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="149" mass="16302" checksum="7FED72CDB5CD7F28" modified="2017-03-15" version="1">MLNVYLSGEIHTDWRNQITSAASHLDVSFNSPVTDHDASDDCGVAIMGAEDQKFWHDHKGAKLNAIRTSKGIADADIVVVRFGEKYRQWNAAFDAGYAAALGKSLIVMHQDEHQHALKEVDAAALAVVKTPQQVVEILTYVLTGSLQKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RWP6</accession>
    <name>A0A1M5RWP6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">30S ribosomal protein S21</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rpsU</name>
        <name evidence="5" type="ORF">SAMN05444003_2733</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the bacterial ribosomal protein bS21 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30610.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072857096.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2733"/>
    <dbReference type="EnsemblBacteria" id="SHH30610">
        <property type="protein sequence ID" value="SHH30610"/>
        <property type="gene ID" value="SAMN05444003_2733"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.1150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00358">
        <property type="entry name" value="Ribosomal_S21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001911">
        <property type="entry name" value="Ribosomal_S21"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018278">
        <property type="entry name" value="Ribosomal_S21_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038380">
        <property type="entry name" value="S21_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01165">
        <property type="entry name" value="Ribosomal_S21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00030">
        <property type="entry name" value="S21p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01181">
        <property type="entry name" value="RIBOSOMAL_S21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 5" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH30610.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="68" mass="8126" checksum="8D7AB0C1891E6666" modified="2017-03-15" version="1">MQVSVRDNNVDQALRALKKKLQREGVFREMKLKQHFEKPSVRKAREKAEAIRRQRKLARKKAQREGLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S4A1</accession>
    <name>A0A1M5S4A1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">VPLPA-CTERM protein sorting domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2852</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33417.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH33417">
        <property type="protein sequence ID" value="SHH33417"/>
        <property type="gene ID" value="SAMN05444003_2852"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022472">
        <property type="entry name" value="VPLPA-CTERM"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03370">
        <property type="entry name" value="VPLPA-CTERM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="307"/>
            <end position="326"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH33417.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="333" mass="36073" checksum="8A75C1DE6B651EA2" modified="2017-03-15" version="1">MCFCSAAYTFELMEGLLPSQYFRLVQVTRAAMIKPFTRAAISVVFLNVLSSIATAGPIHPMDLQVALTPGTNDSTSPYQDDVHLTEITFGDLVLSITDQIVSVADFEVLSGRSNINAEWGDLDDDADGDADPFVKAGFSGLDQETVDPTVQDATLQEAFSSFSLSEMSDGEGNSEFSFQLLFAQSLVDNAYGEDEIPELVIFERGLNDDFDIRLILGESAGEYTYSDWLQTSSKLYFDTGIRVDTVEINSSQSIGVGGYDFDMFGLPEGQAVFGMELRTTNGSGPDLNGFFLTAADPDSFGPELTPVPLPAAGWMLIVGLGSLAAMRRRKKVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S4Y1</accession>
    <name>A0A1M5S4Y1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Helix-turn-helix domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2856</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33505.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH33505">
        <property type="protein sequence ID" value="SHH33505"/>
        <property type="gene ID" value="SAMN05444003_2856"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018062">
        <property type="entry name" value="HTH_AraC-typ_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00041">
        <property type="entry name" value="HTH_ARAC_FAMILY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="2">
        <location>
            <begin position="148"/>
            <end position="249"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH33505.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="261" mass="28801" checksum="F80A7DC66CEB96A5" modified="2017-03-15" version="1">MSSIPDYQVETVPDDLAPFFTRFLKLDFQTEGSVTIPARPTGHIYLGLIAKGKTRASAEGKSFQAQSGQTHLSGQLTTFDAEYELVGSTEHYLAEFTATGAYRFFERDLGALVNRMEISDELDVGGDGFETFLAHLRELALPAGPEQPRVVSAVEEIEKARGNIRVVDLAEDLGLSERQLRRDFTRIVGMAPKPFAMVQRVLSALQMLSANPEIDMADLVYEAGFSDQPHLIRVFQLYMRATPSNLKLDDDGVLRSIVAGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S560</accession>
    <name>A0A1M5S560_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Iron complex transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_2861</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33634.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902191.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2861"/>
    <dbReference type="EnsemblBacteria" id="SHH33634">
        <property type="protein sequence ID" value="SHH33634"/>
        <property type="gene ID" value="SAMN05444003_2861"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037294">
        <property type="entry name" value="ABC_BtuC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000522">
        <property type="entry name" value="ABC_transptr_permease_BtuC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30472">
        <property type="entry name" value="PTHR30472"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01032">
        <property type="entry name" value="FecCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81345">
        <property type="entry name" value="SSF81345"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="20"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="78"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="110"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="133"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="168"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="209"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="259"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="296"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="329"/>
            <end position="346"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH33634.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="352" mass="36775" checksum="9FFEDAAA7D1106B6" modified="2017-03-15" version="1">MSETTQTSIAPRRLSRTSAFVVGGLAALLVSLSVAISVGAVPVPLSTVWGVFLNKLFPGLIEETWSQGREAIVWEIRFPRALLAMMVGAGLAIVGASLQAVTRNPLADPHLLGISSGGAFGAILALLHTGLFLGLLTVPLLAFFGALAATAIVLAVSRFADATSADRLVLAGVAVSFIIMAAANVLIFLGDPRATHVVVFWMLGGLGLAQWSQLIYPLVVLAACTAWLMTRTTDLNAMTVGDETASTLGIPVARFRLSVFVAGALITGVMVAFSGIIGFVGLMIPHVTRMIVGGDYRSVLPGSALIGAIFLLWADIIARTIMAPEDMPIGIVTGLIGGVFFVWLLGRKRSAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SDT5</accession>
    <name>A0A1M5SDT5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycine/D-amino acid oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2913</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36595.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902308.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2913"/>
    <dbReference type="EnsemblBacteria" id="SHH36595">
        <property type="protein sequence ID" value="SHH36595"/>
        <property type="gene ID" value="SAMN05444003_2913"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAO" evidence="1">
        <location>
            <begin position="33"/>
            <end position="385"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH36595.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="438" mass="49092" checksum="03F3B7B62D41525E" modified="2017-03-15" version="1">MVDWTGEAEIGHPYWWDAVTPRVTEGELPETCDLLVIGAGYTGLSAAIAGHDAGAKVCVIDADIPGIGASSRNGGMVGAPPRFSWDILKTRFGEDVAEQIFEEASSSFEWLQDLLTRENIECDFQKTGRIQMAWTKAQFENQRRLFNTLKAKSRIKVDLVERENLKTEVGTDRYFGGMVYTDHAGLHPAKYHAGLLAAVERRNIPVVSHCPAHSWAREGSRFTVSTPKGNIQADKVVLATNGYTPETFKWHKRRVFPLPSYIIATEELSPNLIGELAPGRRMMVETRARHSYYRISPDGKRLLWGGRAAMVPYRLDNAAARLKSTMVEIWPQLANARLSHVWTGNTGYSFNHMPHVGERDGIHYAMGYSGSGTVMAPYLGAKAAYQTLGDARGETAYSSTTLKTNPIHPFAKPHFLHAADFWYHNWVDRWETRKGRWP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SE05</accession>
    <name>A0A1M5SE05_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">C4-dicarboxylate transporter, DctQ subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_2917</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36699.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902313.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2917"/>
    <dbReference type="EnsemblBacteria" id="SHH36699">
        <property type="protein sequence ID" value="SHH36699"/>
        <property type="gene ID" value="SAMN05444003_2917"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007387">
        <property type="entry name" value="TRAP_DctQ"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35011">
        <property type="entry name" value="PTHR35011"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04290">
        <property type="entry name" value="DctQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="15"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="43"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="86"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="173"/>
            <end position="191"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH36699.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="225" mass="25250" checksum="50BF9E3CF06FCFC0" modified="2017-03-15" version="1">MQRLGRAINTFEETAIAVILGLMTVITFINVVLRYGFGSSLLWGLEVVTILFAWLVLFGISYGVKVTAHLGVDAVTNIVSQPVKKIMLYLSCIACLAYALLLMKGSWDYYANFANMPQTTGRWFPTGLQEMRIQDFRGYKPTVQVPIPEWTRGTLESWLLIEGDDPFEKLPVAIPYMIVPIGAALLLFRFMQATIRVIKGEQDSLIVSHEAEEAIDELEAQRQGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SF07</accession>
    <name>A0A1M5SF07_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2934</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37106.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902335.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH37106">
        <property type="protein sequence ID" value="SHH37106"/>
        <property type="gene ID" value="SAMN05444003_2934"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH37106.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="62" mass="7109" checksum="BDEBBF57AC0806FB" modified="2017-03-15" version="1">MKTKKRWIENTIKAAAECDVQMPWERGARRKAFISRRTDAEGREICVSLAPIPSWMMEAVSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SFF8</accession>
    <name>A0A1M5SFF8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">MFS transporter, PPP family, 3-phenylpropionic acid transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2939</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902342.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2939"/>
    <dbReference type="EnsemblBacteria" id="SHH37221">
        <property type="protein sequence ID" value="SHH37221"/>
        <property type="gene ID" value="SAMN05444003_2939"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026032">
        <property type="entry name" value="HcaT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024989">
        <property type="entry name" value="MFS_assoc_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12832">
        <property type="entry name" value="MFS_1_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004925">
        <property type="entry name" value="HcaT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="7"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="35"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="70"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="129"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="156"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="236"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="264"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="289"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="324"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="352"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="domain" description="MFS_1_like" evidence="6">
        <location>
            <begin position="6"/>
            <end position="352"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF12832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH37221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="384" mass="41222" checksum="8AC7A142E333588F" modified="2017-03-15" version="1">MTPALRVQLYFFVQFMSVGMVNAFAGIWFDTQGLSSVQIGALSAIPNIIVLLIVVFVGRIADRASDWRQVIIFCAIISALAPVGLIYVTGFLGILFFWSVGSIAQRTALPVTDAAGLRMARREGLNFGAFRGLSTLGYLLVIIFAGFALRDRGVEVFLPLFIGLGLLRGLASLFLPKMRAPEAVHASRSAGNLRSLMKAWFLLPIIGYALLDTPHLILNSFQGLLWARQGVSTETIGLLIALGAAAETAMFFAFAHVAKRFPPITLLLIGVAASIFRWLAMATSPEVPALIGLQTLHAVTYASAFLAITNYVADNVSEDNAAQAQSLIVNFELVLSSLGMMLFGWLVGHYGAYSYVASAAMAAIAGILILLGRQMRPADEATSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SHS9</accession>
    <name>A0A1M5SHS9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">DoxX-like family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2977</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the DoxX family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38049.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902408.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH38049">
        <property type="protein sequence ID" value="SHH38049"/>
        <property type="gene ID" value="SAMN05444003_2977"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032808">
        <property type="entry name" value="DoxX"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13564">
        <property type="entry name" value="DoxX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="39"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="66"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="89"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH38049.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="114" mass="11936" checksum="BD3C04375EE83D24" modified="2017-03-15" version="1">MRILDYFAMALVSFIMLAGASLKLTGNEVALQSFIDLGLPSWFGTFIGVCEALGAIGLWLRPTSRLAALGIAIIMCGAIYYHVVFPPIAAGLPAAGVLIACFYIIGRKGTGVVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SIJ0</accession>
    <name>A0A1M5SIJ0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Complex I intermediate-associated protein 30 (CIA30)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2989</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CIA30 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38311.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH38311">
        <property type="protein sequence ID" value="SHH38311"/>
        <property type="gene ID" value="SAMN05444003_2989"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013857">
        <property type="entry name" value="NADH-UbQ_OxRdtase-assoc_prot30"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039131">
        <property type="entry name" value="NDUFAF1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13194">
        <property type="entry name" value="PTHR13194"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08547">
        <property type="entry name" value="CIA30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="SSF49785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CIA30" evidence="2">
        <location>
            <begin position="10"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08547"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH38311.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="163" mass="17651" checksum="741EF5D7EB83FEE5" modified="2017-03-15" version="1">MILEDFTDGDAAGWSYVSDRVMGGVSDGGAAFMQEGDTTFARLAGEVSTANNGGFIQIRRQLTVPLPDTSSGLSLTARGNGERYYVHLRPANSRRPWQYYATSFEAAPEWETVSLNWSDFKPQGGLPATFDPSQIVSLGIVAYGADYTAELDVKRVEVISPSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SIV6</accession>
    <name>A0A1M5SIV6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Adenosine deaminase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2996</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38466.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902435.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2996"/>
    <dbReference type="EnsemblBacteria" id="SHH38466">
        <property type="protein sequence ID" value="SHH38466"/>
        <property type="gene ID" value="SAMN05444003_2996"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019239">
        <property type="term" value="F:deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001365">
        <property type="entry name" value="A_deaminase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006330">
        <property type="entry name" value="Ado/ade_deaminase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43114">
        <property type="entry name" value="PTHR43114"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00962">
        <property type="entry name" value="A_deaminase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01430">
        <property type="entry name" value="aden_deam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="A_deaminase" evidence="3">
        <location>
            <begin position="8"/>
            <end position="326"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH38466.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="328" mass="36358" checksum="9AAAA4A7D6B7FA32" modified="2017-03-15" version="1">MSFQKMKKIELHLHHEAAAPPSFIRGLAAEKKIDISKIFDDQGNYVFHDFDHFLTVYDAACLPLQTPEDFRRLTLAALEETAKHGVIYCETFVSPDFCGGADVAAWKEFFAAMKEASEEAERSFSITHRTIVTCLRHLGPEKAKPAALCAVETAGDYLVGFGMAGAEMMGRPGEFAYSFDMAREAGLNLTCHAGEWGGPDMVADTLRDLKVSRIGHGINAIHDPNVVQQLVDQDVVLEVCPVSNVVLKAVSGWDAHPIQRLRDAGVKVTVSTDDPPFFHTTMTEEYRQLAENFGWGEDDFDAITQTALDAAFCDKQTKERLAQELRDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SX15</accession>
    <name>A0A1M5SX15_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">GTPase, G3E family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3164</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the SIMIBI class G3E GTPase family. CobW subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42920.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902745.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3164"/>
    <dbReference type="EnsemblBacteria" id="SHH42920">
        <property type="protein sequence ID" value="SHH42920"/>
        <property type="gene ID" value="SAMN05444003_3164"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011629">
        <property type="entry name" value="Cbl_biosynth_CobW-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036627">
        <property type="entry name" value="CobW-likC_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003495">
        <property type="entry name" value="CobW/HypB/UreG_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02492">
        <property type="entry name" value="cobW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07683">
        <property type="entry name" value="CobW_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00833">
        <property type="entry name" value="CobW_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CobW C-terminal" evidence="2">
        <location>
            <begin position="259"/>
            <end position="374"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH42920.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="403" mass="45279" checksum="F24B94EA55F66C64" modified="2017-03-15" version="1">MTDSRLPVTVFSGFLGAGKTTLLNRVLNNREGRKVAVIVNDMSEVNIDADLVRADTELSRTDETLVEMSNGCICCTLRDDLLDEVRRLSEDGRFDYLLIESTGISEPLPVAATFDFRDEYGDSLSDVARLDTMVTVVDAANLLNDYASHDFISDRGESMGEEDDRTLVHLLTDQIEFADVVILNKVEDAGPQKVDAARKIIRSLNADAEIIETNHSEVAAEKILDTGRFDFEQAHEHPMWAKELYGFADHVPETEEYGVVSYVYRARLPFVPQRILEVLNGDLPGVIRAKGHFWISTRPDWVAEFSLAGALSSVKPLGTWWASVPEERRPNHDTARDYMQAHWQEPWGDRRQEIVFIGAGIDWEVLKSRLDNCLVPAVAALGPDNLPEYDDPFPIWKRAEDAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SXH4</accession>
    <name>A0A1M5SXH4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3180</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH43261.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902772.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH43261">
        <property type="protein sequence ID" value="SHH43261"/>
        <property type="gene ID" value="SAMN05444003_3180"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012668">
        <property type="entry name" value="CHP02466"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13759">
        <property type="entry name" value="2OG-FeII_Oxy_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02466">
        <property type="entry name" value="TIGR02466"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH43261.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="205" mass="22851" checksum="8B1A6FD9C8E231DF" modified="2017-03-15" version="1">MTLKSLFATRLYHAPLNDHGSIDPDELVANCYGIAEDDEAGQDWCETEGFPGYTSYASLTDLPWRFPIFADVVAALDKHVAAFAKDCAFDLGDKELKLEDIWINILPPGGIHTGHIHPHSVISGTTYVALPEGSAAIKYEDPRLAMMMAAPPRLKDAAEELRQFIYVKPAVGDVLLWESWLRHEVPMNEAEDDDRISVSFNYSWG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T467</accession>
    <name>A0A1M5T467_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Glycine betaine/proline transport system substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_3228</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45506.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3228"/>
    <dbReference type="EnsemblBacteria" id="SHH45506">
        <property type="protein sequence ID" value="SHH45506"/>
        <property type="gene ID" value="SAMN05444003_3228"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007210">
        <property type="entry name" value="ABC_Gly_betaine_transp_sub-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04069">
        <property type="entry name" value="OpuAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012725630" evidence="2">
        <location>
            <begin position="29"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="domain" description="OpuAC" evidence="3">
        <location>
            <begin position="32"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF04069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH45506.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="327" mass="34911" checksum="447C624148A32655" modified="2017-03-15" version="1">MGEIMKHSLKLASAAVTAGLLSATSAQADCGEVSITQMDWASSQVVTAVAAFLMEQGYGCTVQQVPSSTVPALTSLAETGEPDILTEVWANSTPAYEGLLEEGKLIELTDVLSDGGVEAWWIPAYLAESNPELTTWEGIMANPEAVGGKFHDCPSGWACDIINNNNLIAAGIDGSGLERFQHGSGETLQTSIAAAYDAQEPWFGYYWAPTAVLGKYPMVQVEVPAYDAEGHTCNGDADCANPVFSAYPSSKVVTAVSGAFMEREPEVAELLKNVSFTNAQMGEVLAWRLDNNASNEEAAVYFLTTYKDVWGDWLNDEAKGNLAALLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T863</accession>
    <name>A0A1M5T863_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">VOC domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3288</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46888.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902973.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3288"/>
    <dbReference type="EnsemblBacteria" id="SHH46888">
        <property type="protein sequence ID" value="SHH46888"/>
        <property type="gene ID" value="SAMN05444003_3288"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004360">
        <property type="entry name" value="Glyas_Fos-R_dOase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00903">
        <property type="entry name" value="Glyoxalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="8"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH46888.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="125" mass="13225" checksum="80469DBE658DAEF7" modified="2017-03-15" version="1">MSLISVEKTITIALSVSDRHASADWYTSMLGFELLYHADEAGWSEVATNTDGVTIGFGEHTKPVPGNSVPVFGIADIEDARSKLEGAGVKFDGPTDVVEGMVKTATFYDPDGNALMLAEDLTGGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T9U7</accession>
    <name>A0A1M5T9U7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Sulfoacetaldehyde dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3294</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000009">
        <property type="protein sequence ID" value="SHH47509.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902998.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000009.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3294"/>
    <dbReference type="EnsemblBacteria" id="SHH47509">
        <property type="protein sequence ID" value="SHH47509"/>
        <property type="gene ID" value="SAMN05444003_3294"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="2">
        <location>
            <begin position="50"/>
            <end position="271"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH47509.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="469" mass="51366" checksum="1B2E127C105FFEF5" modified="2017-03-15" version="1">MARELTEDERQLALDMVERARVAMAAVEDWSQKDLNRLSQAIAWYAGNEETFTRLAQQGVDESGIGDREGRPAKRFKIHMVLRDVLRTPSTGVVEVDEERGLVKYAKPAGVIASLIPMTNPAMTPPVTGVSSANARNAVIFSPHPRTAGTTFEMVEVMRAACRGVGAPEDLFQTIRYPSIPLTQFLMEVADLTLATGGKPMVKAAYSSGRPAYGVGAGNSSIVIDDTADIEIAAQNTRISKTSDFGSGCSADGNIIIQKSIYDQMINALEAEGGYLCSQEEKDLLEKAMWDEKGNRTFPTIACRPQQTADVAGFSIPEDRNFLMVENQGQIGPDHKFSKEKLTTLMALYHFDTFDDALATVAQIYDTGGKGHSCGIYSHNDDHIDRLARLAPVSRMMVRQPQSKANAGAWTNGMPMTSSLGCGIWGGNITNENVTMKHMMNYTWVSRPIAEDRPSEQELFGEFYGQEIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TA86</accession>
    <name>A0A1M5TA86_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">3-dehydroshikimate dehydratase</fullName>
            <shortName evidence="2">DSD</shortName>
            <ecNumber evidence="2">4.2.1.118</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_3300</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the conversion of 3-dehydroshikimate to protocatechuate (3,4-dihydroxybenzoate), a common intermediate of quinate and shikimate degradation pathways.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>3-dehydroshikimate = 3,4-dihydroxybenzoate + H2O</text>
            <dbReference type="Rhea" id="RHEA:24848"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16630"/>
            <dbReference type="ChEBI" id="CHEBI:36241"/>
            <dbReference type="EC" id="4.2.1.118"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2">Aromatic compound metabolism; 3,4-dihydroxybenzoate biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial two-domain DSD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.118" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000009">
        <property type="protein sequence ID" value="SHH47642.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072903010.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000009.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3300"/>
    <dbReference type="EnsemblBacteria" id="SHH47642">
        <property type="protein sequence ID" value="SHH47642"/>
        <property type="gene ID" value="SAMN05444003_3300"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00088"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046565">
        <property type="term" value="F:3-dehydroshikimate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046279">
        <property type="term" value="P:3,4-dihydroxybenzoate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd08342">
        <property type="entry name" value="HPPD_N_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02238">
        <property type="entry name" value="DSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041736">
        <property type="entry name" value="4OHPhenylPyrv_dOase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043700">
        <property type="entry name" value="DSD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004360">
        <property type="entry name" value="Glyas_Fos-R_dOase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00903">
        <property type="entry name" value="Glyoxalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="1 2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="3">
        <location>
            <begin position="289"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="domain" description="VOC" evidence="3">
        <location>
            <begin position="436"/>
            <end position="585"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="439"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="517"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="594"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02238"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH47642.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="627" mass="69417" checksum="D77AAE6F4AFD318A" modified="2017-03-15" version="1">MKLCMATSAVPGDLPRKLESIAEAGFDGVELSEPDLLKFSGKVEDVVRQADDLDLRINLLQPFWEFEGKVGAERAATMARLDQKLELTSALGAHTLLVCTSANTNHNFDRAKILKDFEHLACRAEQFGVRVAVLALPWAKHLFQETQVFEIVSELDNPNLGLALNSRFSLLNGSQAARLRDLPNEKVFHVQLSDASVVAQEPIHTKNQAGLLPGQGELNLESFVRVLARIGYDGPWSLGQVTEGSVLGAEGSAKDGFRAIVSLLDEVARTERSLQRPMKHLPARGYPSGFEFLEFAVDEESKQELTQTLSTMCFRRERRHVSKSVELWRQGAVNIVVNWENAGFAADAFETHGPTVCDMGLRVRDAKSVVARAKSLGAPEFEQPVGTGELAIPAIQGVGGNVVHFIDEKSDLHRVWDIEFDPVSKAKAIAPAGLRRIDHVAQTMRYEEMQSWLTYYTTTFELEKAPVVDVADPSGVVLSQALSSPEGEVRLNLNGADEKRTFAGAFLADQFGAGVQHVAFVSDDIFETSDQLAETGFERLQMPENYYDDLEVRFSLDGELTKALRDGQMLYDRDEAGEYFQIYGAPIFKGFFFEIVERKGGYQGYGAPNAPIRLAAQLRYLQERQAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TB58</accession>
    <name>A0A1M5TB58_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, RpiR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3313</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000009">
        <property type="protein sequence ID" value="SHH47941.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072903033.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000009.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3313"/>
    <dbReference type="EnsemblBacteria" id="SHH47941">
        <property type="protein sequence ID" value="SHH47941"/>
        <property type="gene ID" value="SAMN05444003_3313"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901135">
        <property type="term" value="P:carbohydrate derivative metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05013">
        <property type="entry name" value="SIS_RpiR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000281">
        <property type="entry name" value="HTH_RpiR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035472">
        <property type="entry name" value="RpiR-like_SIS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001347">
        <property type="entry name" value="SIS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01418">
        <property type="entry name" value="HTH_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01380">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SSF53697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51071">
        <property type="entry name" value="HTH_RPIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH rpiR-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51071"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH47941.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="284" mass="32382" checksum="D660282B7B841AD1" modified="2017-03-15" version="1">MTVSEKLLQHRDEMTPSERQLVSTLLDDYPIIGLGRITELAQTASVSTTTVTRMLQKTGFDGFPQFQAALRSELKEMISDPVAKRQHWQSDFPDEHILTRYFRQAIENQQRSMDDIDPADFDALCKLLSDKKRTIFITGGRITGTLARYLFLHMQMIRPNVRLVADGGAWPHDLLDLQKGDVVVAFDVRRYENTTLQLTQMCQSKGAEIVLLTDQWRSPIHRIAALTFTGRIAVPSAWDSCSPLLMLVECTIAALQETMWDTVKGRNEALEDAFDQTKLFRKFT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L2L4</accession>
    <name>A0A1M5L2L4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Inositol-1-monophosphatase</fullName>
            <ecNumber evidence="6">3.1.3.25</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0034</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a myo-inositol phosphate + H2O = myo-inositol + phosphate</text>
            <dbReference type="Rhea" id="RHEA:24056"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:17268"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:84139"/>
            <dbReference type="EC" id="3.1.3.25"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3 6">Belongs to the inositol monophosphatase superfamily.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.25" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58663.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898361.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0034"/>
    <dbReference type="EnsemblBacteria" id="SHG58663">
        <property type="protein sequence ID" value="SHG58663"/>
        <property type="gene ID" value="SAMN05444003_0034"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008934">
        <property type="term" value="F:inositol monophosphate 1-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052832">
        <property type="term" value="F:inositol monophosphate 3-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052833">
        <property type="term" value="F:inositol monophosphate 4-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046855">
        <property type="term" value="P:inositol phosphate dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046854">
        <property type="term" value="P:phosphatidylinositol phosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01639">
        <property type="entry name" value="IMPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033942">
        <property type="entry name" value="IMPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020583">
        <property type="entry name" value="Inositol_monoP_metal-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000760">
        <property type="entry name" value="Inositol_monophosphatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020550">
        <property type="entry name" value="Inositol_monophosphatase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022337">
        <property type="entry name" value="Inositol_monophosphatase_SuhB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00459">
        <property type="entry name" value="Inositol_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00377">
        <property type="entry name" value="IMPHPHTASES"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01959">
        <property type="entry name" value="SBIMPHPHTASE"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00629">
        <property type="entry name" value="IMP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00630">
        <property type="entry name" value="IMP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU364068"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG58663.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="263" mass="28521" checksum="305D32F1DCE85350" modified="2017-03-15" version="1">MAGSANLNVMMKVARKAGRGLLKDFGEVENLQVSAKGPGDFVSRADKQAEETIREELMEARPTYGFLGEEGAEIEGKDPTRRWIVDPLDGTTNFLHGLPHWAVSIALEHKGQIVAGVIYDPVKDEMFYAEKGFGAFVNEARLRVSGRHRMAEAIFATGLPFSGRPDLPETLQDLARLLPACAGVRRFGAASLDLAYVAAGRYDGFWERGLNAWDIAAGIVILKEAGGLIEAMNPEGDVLNDGALICANEPIFDTFAKVIRKGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L387</accession>
    <name>A0A1M5L387_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">PAP2 superfamily protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0079</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59544.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898421.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0079"/>
    <dbReference type="EnsemblBacteria" id="SHG59544">
        <property type="protein sequence ID" value="SHG59544"/>
        <property type="gene ID" value="SAMN05444003_0079"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026841">
        <property type="entry name" value="Aur1/Ipt1"/>
    </dbReference>
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        <property type="entry name" value="PAP2_3"/>
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    </dbReference>
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    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="22"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="48"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="78"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="140"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="168"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="247"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="285"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="domain" description="PAP2_3" evidence="6">
        <location>
            <begin position="112"/>
            <end position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF14378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG59544.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="314" mass="34244" checksum="EB4AA8AE01BD2495" modified="2017-03-15" version="1">MTSTTTDTATAKPEIWLTRQEVILLIMLGVIGALAICVVTLLDRQVAWPVFIRVLVINAGLMAFGAAIRAYRSMERMGLAMIAVSFYMSFGIFMLILSNSFFPVVGPIIDTQLIEIDAMLGYHWAGFVGWLAEYPTLGKLLGPIYTSSLIQLAILFGVLAWYNSAQQIYHLVACGTVGLALTMAIWIAIPSFGPSAYQPISPEVANAINLFTDNAYGATLLDYAKNGIPIISPETVKATVAFPSFHIIMACLTVWFARGTIVFWPVAILNTLMIPATLSHGGHHLIDLIAGILVFFLALRISAWFLKEPRSAQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L4L7</accession>
    <name>A0A1M5L4L7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Threonine/homoserine efflux transporter RhtA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0098</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
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        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
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                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59926.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0098"/>
    <dbReference type="EnsemblBacteria" id="SHG59926">
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        <property type="gene ID" value="SAMN05444003_0098"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
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        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
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    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="40"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="70"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="97"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="125"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="150"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="183"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="215"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="245"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="270"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="9"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="148"/>
            <end position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG59926.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="304" mass="32482" checksum="E6C0D8A38523A100" modified="2017-03-15" version="1">MGDRVLPAMALMIGFCITAPLLDVFAKLAAETIPVGQITAARFIVQAALMLPLCWFVGQSALIARAQLPLMIARSVCLLAATYCFIAAIRVMPIADALAIAFVEPFVILLLGYLVFRDKIGPRRVMASAVGFGGALLVIQPSLAAFGWVALYPLATAFTFAAYMIITRGLTKTVGPMTMQFQTALIATVLCLPILALGNGSGLSDIDPVWPQGIFWVWLIGVGVAAAASHLMMTYALGMAPASTLAPLHYLEIVTAVILGFLIFGDFPNWLTWIGIAIIVGSGLYVIYRERQDGRQIAPLPAQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L5Q9</accession>
    <name>A0A1M5L5Q9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">VPLPA-CTERM protein sorting domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0118</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
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            <taxon>Alphaproteobacteria</taxon>
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        </lineage>
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    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60357.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG60357">
        <property type="protein sequence ID" value="SHG60357"/>
        <property type="gene ID" value="SAMN05444003_0118"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013424">
        <property type="entry name" value="PEP_exosort_dom"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02595">
        <property type="entry name" value="PEP_exosort"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012522336" evidence="2">
        <location>
            <begin position="31"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="271"/>
            <end position="291"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG60357.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="320" mass="34928" checksum="064B29800716A3EE" modified="2017-03-15" version="1">MRPKHFPLKNAVSVLALSAASVVMATSANAVTIDGVLDQGFTDHYEWITTGYWVTDGDGKKKDKKKGDDTGDSADAVTSGTTDIYWKEDGDNLFVFVEVPQEAKDTTWGTDVNLDYGKALDFDDATHSEDVRFDLSFNEDGGGTGKEKGKKKDGEDIHISYNLIDGIGKDSEGIEAGAELFNDVATDVKTSLHYLYANFPDNVGKEKNSNFSHPDWYPTMAFEFAFSILKIESKAGTFYDDAESGDFDSVAFINDLAGNFTYHLSPSLNGSKQDLVPDPDKPPDGPSPISPVPVPASIPLLLSGIGGMWFMFRRRKTISD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L609</accession>
    <name>A0A1M5L609_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">CubicO group peptidase, beta-lactamase class C family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0122</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60448.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0122"/>
    <dbReference type="EnsemblBacteria" id="SHG60448">
        <property type="protein sequence ID" value="SHG60448"/>
        <property type="gene ID" value="SAMN05444003_0122"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001466">
        <property type="entry name" value="Beta-lactam-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00144">
        <property type="entry name" value="Beta-lactamase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="28"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="domain" description="Beta-lactamase" evidence="3">
        <location>
            <begin position="79"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00144"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG60448.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="416" mass="45266" checksum="11130885E49F0BE2" modified="2017-03-15" version="1">MRLTLKPRSMQSTENSGGRDKREGCKMVLAMALRIFLALFIILVLLGIGLYAAAIKAPRAPQGVVEQSEVVEYLDLLVASKTATAVSVAVMRNGELIWEHAAGQANPFEARDATPDTVYHIWSVTKVATALAVLDLAEDGLLDLDSPVTSVLPWFDVEAKEGRAMTVRDLLGHTSGLRDTVPAVFGWLRYDEDLPNQTDYLKAKMPEYRSLRFAPGEDRRYSNLGYMVLGAIVEGVTGEEYSDVIRERVLEPAGMTSTDFTFTSDLAPREALGSHPIIHVFSPLLPFLIDMGDFTHMHDGPLLWQNRLYVEATPPTGLIASARDAARLAQAALSPGVVLEEETLSLMRPSSPDQTPLGWFERGSETRHWLQHRGGGPGYAAAVRVYPDEGLVIAVLASGTAAPASTITDLVAGLKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L7Y6</accession>
    <name>A0A1M5L7Y6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0150</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61045.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0150"/>
    <dbReference type="EnsemblBacteria" id="SHG61045">
        <property type="protein sequence ID" value="SHG61045"/>
        <property type="gene ID" value="SAMN05444003_0150"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.550">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023352">
        <property type="entry name" value="MAPEG-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001129">
        <property type="entry name" value="Membr-assoc_MAPEG"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01124">
        <property type="entry name" value="MAPEG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161084">
        <property type="entry name" value="SSF161084"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="71"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="102"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG61045.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="128" mass="14336" checksum="DDE2CAC385BA7DC6" modified="2017-03-15" version="1">MMDLVTPLYSIPLVALFLVLSWRVIAERRGQRFAYGDNDSLKVQAKIRAQANWSEYVPITLLMMVMAELQGVSTALVHVTGVTLLVGRFLHGYGMSYVPKQFIYRQIGMLLTLIALVFGMGLNLIGLM</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LFQ0</accession>
    <name>A0A1M5LFQ0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Tripartite ATP-independent transporter, DctQ component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_0263</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63776.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898692.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0263"/>
    <dbReference type="EnsemblBacteria" id="SHG63776">
        <property type="protein sequence ID" value="SHG63776"/>
        <property type="gene ID" value="SAMN05444003_0263"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007387">
        <property type="entry name" value="TRAP_DctQ"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35011">
        <property type="entry name" value="PTHR35011"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04290">
        <property type="entry name" value="DctQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="21"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="63"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="92"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="151"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG63776.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="197" mass="21732" checksum="2EFBECA16258D5AE" modified="2017-03-15" version="1">MSVLFGALWPLERINNVLLGIGRVIAIIALAVMVCLILGQVFFRYVLNDAPNWTEEAARFGMLWMTGLMAPSAMRMGGFVAIDMLERALPTALSRLLTLFLLLISLGVLLIAWDKGLNNHVDSLSGRGSSASLRIPLEMFGGENIKFRNNWQFASLFVGVNLMILVAIELIIRQFIIIGGRGDELTLLNDENAVRAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LI80</accession>
    <name>A0A1M5LI80_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Xanthine dehydrogenase accessory factor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0298</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64620.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898733.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0298"/>
    <dbReference type="EnsemblBacteria" id="SHG64620">
        <property type="protein sequence ID" value="SHG64620"/>
        <property type="gene ID" value="SAMN05444003_0298"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003777">
        <property type="entry name" value="XdhC_CoxI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027051">
        <property type="entry name" value="XdhC_Rossmann_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13478">
        <property type="entry name" value="XdhC_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02625">
        <property type="entry name" value="XdhC_CoxI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="XdhC_CoxI" evidence="1">
        <location>
            <begin position="15"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="domain" description="XdhC_C" evidence="2">
        <location>
            <begin position="175"/>
            <end position="316"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02625"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG64620.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="324" mass="34501" checksum="6D9EDAFD11C33DF1" modified="2017-03-15" version="1">MIRSDHDLLALALDWHKAGRKVAIATVLETWGSAPRGVGSLLVMDDAGAMEGSVSGGCVEGAVMVEAMDAVSDGKPRVLEYGVSDDTAFEVGLACGGTIRILVEAVGASMGEDVLRSLVASKLSAKPAAYVVDLESNARRVSDASEYVERFRVDRSGIEEDGRTFVAIHNPPLRLFIVGAVHIAQHLAPMARAVGMSVTVIDPREAFAVAARFPDETLVHEWPDEAIDALAPNERTAIVTLTHDPKLDDPALQSALKSKAFYIGCLGSKRTHAKRVTRLEESGWTVDDIDRLHAPIGLPLGGRAPAEIAVSVIAEIVQSLRSAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LID7</accession>
    <name>A0A1M5LID7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0304</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64726.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898743.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0304"/>
    <dbReference type="EnsemblBacteria" id="SHG64726">
        <property type="protein sequence ID" value="SHG64726"/>
        <property type="gene ID" value="SAMN05444003_0304"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG64726.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="191" mass="19351" checksum="B0CE59DE4E9B27C6" modified="2017-03-15" version="1">MRAILILVIVGALGYFGYQYFAGDETMSDVVDDAADAASDAAEAAADTAEEVVDGAADAASDAADVVEEAVDDAAAATEEAVEETTDTATEMADDATEAVEETVDEAADAANAATDTATDTAEAAADGADSMVQQLLSLDGFDADKVGEMIANSDLSDVQKTTLTTVLEGAKDNPELLEGALEQIKTALGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LJY6</accession>
    <name>A0A1M5LJY6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Rhamnose ABC transporter membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0333</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65276.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898778.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0333"/>
    <dbReference type="EnsemblBacteria" id="SHG65276">
        <property type="protein sequence ID" value="SHG65276"/>
        <property type="gene ID" value="SAMN05444003_0333"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="44"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="67"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="91"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="120"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="160"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="212"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="236"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="266"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="291"/>
            <end position="311"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG65276.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="327" mass="34382" checksum="E8EFD9E1755A640B" modified="2017-03-15" version="1">MPKQIFTSREFLLTGAIVLLLAIIATRFPAFIAPSNLANVFNDTAPLILLAIGQMIVILTRCIDLSVAANLALTGMVVSMINVAVPGLPVPIIIFVSVAFGALLGMVNGILVWKLEIPPIVVTLGTMTIFRGTIFLLSEGKWINAHEFSEPFKAFPRTELLGLPLMSWIAIAAVILFSVVMSRTTLGRAFYAAGGNPHAATYAGIDVGRTQFWAFTISGALAGLTGYLWVSRFAVAFVDLAGGFELSVVAACVIGGVAIMGGIGSVVGAMLGALFLGIISNALPVVNISPFWQLAISGSAIIIAVALNAQANREKGRIILKRAENAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LKH9</accession>
    <name>A0A1M5LKH9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphonate degradation operons associated HDIG domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0346</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65541.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898798.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0346"/>
    <dbReference type="EnsemblBacteria" id="SHG65541">
        <property type="protein sequence ID" value="SHG65541"/>
        <property type="gene ID" value="SAMN05444003_0346"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006674">
        <property type="entry name" value="HD_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01966">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HD" evidence="1">
        <location>
            <begin position="38"/>
            <end position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG65541.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="198" mass="22348" checksum="DEBA2FEE1F998DA7" modified="2017-03-15" version="1">MTDKPTDLTAENIVEFLASIFERRGAEEYLGEPVTIGEHMLQGATIAEQNGQSDEIIVGALLHDIGHFTSEFGTFTMDDVEDRHHEDAGAKVLERFFPKVVTDCCKYHVAAKRYLCATNPTYFERLSEASVHSLNLQGGPMSKQEVKEFEKNPNLKEIIAVRYLDEAGKIAGMETPDFRHFVPRVRRLVHQHVGMVET</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LKZ5</accession>
    <name>A0A1M5LKZ5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized conserved protein, DUF924 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0354</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65708.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898814.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0354"/>
    <dbReference type="EnsemblBacteria" id="SHG65708">
        <property type="protein sequence ID" value="SHG65708"/>
        <property type="gene ID" value="SAMN05444003_0354"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010323">
        <property type="entry name" value="DUF924"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06041">
        <property type="entry name" value="DUF924"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG65708.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="193" mass="22404" checksum="81501603CE51137A" modified="2017-03-15" version="1">MTPQDVLSFWLDECRPEDWYRSDEELDTKISDRFLSTWERAADGALGMWLTCPSETLAYIILIDQFSRNMFRGSPKSFELDPAAKAAAKMAIKREWDLKIDEPARQFFYMPLMHAENLCDQDRAVRLFHTRMPETGVHNIDHARTHREIIRRFGRFPYRNKALGRKSTPAEQDFLNNSGYGAILNELKEGAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LQ59</accession>
    <name>A0A1M5LQ59_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cold-shock DNA-binding protein family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0388</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66483.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898862.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0388"/>
    <dbReference type="EnsemblBacteria" id="SHG66483">
        <property type="protein sequence ID" value="SHG66483"/>
        <property type="gene ID" value="SAMN05444003_0388"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04458">
        <property type="entry name" value="CSP_CDS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011129">
        <property type="entry name" value="CSD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002059">
        <property type="entry name" value="CSP_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00313">
        <property type="entry name" value="CSD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00050">
        <property type="entry name" value="COLDSHOCK"/>
    </dbReference>
    <dbReference type="SMART" id="SM00357">
        <property type="entry name" value="CSP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51857">
        <property type="entry name" value="CSD_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CSD" evidence="1">
        <location>
            <begin position="8"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="domain" description="CSD" evidence="1">
        <location>
            <begin position="101"/>
            <end position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG66483.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="172" mass="18557" checksum="23378D3DB57BE306" modified="2017-03-15" version="1">MTTDASNEIHGQIKWFDPAKGFGFVVSDEGGPDILLHANVLRNFGQGSVADGSRIIIVVQRTDRGLQAVEIVSIEPPEDDGSPALGDMQEVTPEEIAASPIHPARVKWFDKGKGFGFANVFGDDRDVFLHIEVLRRSGLSDLATGEAVGMRMMSGARGMMAIEITTWESGSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LT41</accession>
    <name>A0A1M5LT41_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0462</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the BolA/IbaG family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68181.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898974.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0462"/>
    <dbReference type="EnsemblBacteria" id="SHG68181">
        <property type="protein sequence ID" value="SHG68181"/>
        <property type="gene ID" value="SAMN05444003_0462"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002634">
        <property type="entry name" value="BolA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036065">
        <property type="entry name" value="BolA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01722">
        <property type="entry name" value="BolA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003113">
        <property type="entry name" value="BolA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82657">
        <property type="entry name" value="SSF82657"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU003860"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG68181.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="77" mass="8311" checksum="1EC8408A8C4E4B91" modified="2017-03-15" version="1">MIDAPTIEALIRESFPDADITVEGDDGAHFAAKVIDESFRGKNRVQQQRAVYAALKGKMDGNNGELHALALTTKAPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LTI9</accession>
    <name>A0A1M5LTI9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Cytochrome c-type biogenesis protein CcmE</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Cytochrome c maturation protein E</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Heme chaperone CcmE</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">ccmE</name>
        <name evidence="7" type="synonym">cycJ</name>
        <name evidence="10" type="ORF">SAMN05444003_0468</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the CcmE/CycJ family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898981.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0468"/>
    <dbReference type="EnsemblBacteria" id="SHG68321">
        <property type="protein sequence ID" value="SHG68321"/>
        <property type="gene ID" value="SAMN05444003_0468"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017004">
        <property type="term" value="P:cytochrome complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017003">
        <property type="term" value="P:protein-heme linkage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01959">
        <property type="entry name" value="CcmE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004329">
        <property type="entry name" value="CcmE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036127">
        <property type="entry name" value="CcmE-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34128">
        <property type="entry name" value="PTHR34128"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03100">
        <property type="entry name" value="CcmE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82093">
        <property type="entry name" value="SSF82093"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3 7" id="KW-0201">Cytochrome c-type biogenesis</keyword>
    <keyword evidence="1 7 8" id="KW-0349">Heme</keyword>
    <keyword evidence="7 8" id="KW-0408">Iron</keyword>
    <keyword evidence="6 7 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0735">Signal-anchor</keyword>
    <keyword evidence="2 7 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7 9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="topological domain" description="Cytoplasmic" evidence="7">
        <location>
            <begin position="1"/>
            <end position="9"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="topological domain" description="Extracellular" evidence="7">
        <location>
            <begin position="31"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="binding site" description="covalent" evidence="7 8">
        <location>
            <position position="123"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="7 8">
        <location>
            <position position="127"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022748"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01959"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR604329-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG68321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="148" mass="16422" checksum="46ADB38576EE5582" modified="2017-03-15" version="1">MKSLKKQRRIQIIIVAFFALVISTALIGYAMRDGINFFYSPTQVTENPPSPTEVFRIGGLVEEGSIQRGEGTEVSFRVTDGINAVPVTYDGILPDLFEENQGMVGQGRYVNGTFEAFEILAKHDEEYIPKEVLDVLKENGTYVEPDGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LTU1</accession>
    <name>A0A1M5LTU1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0474</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68468.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898987.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0474"/>
    <dbReference type="EnsemblBacteria" id="SHG68468">
        <property type="protein sequence ID" value="SHG68468"/>
        <property type="gene ID" value="SAMN05444003_0474"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018376">
        <property type="entry name" value="Enoyl-CoA_hyd/isom_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00166">
        <property type="entry name" value="ENOYL_COA_HYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG68468.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="258" mass="27843" checksum="EC1D2D29DAC7BDAA" modified="2017-03-15" version="1">MQYQAISYVNRTGVGVITLNRAEVMNALNTQMRAEITHAVKAAEQEARVLVITGRGKAFCSGQDLGDGGNAARLDLERTLRDEYVPMLKAIFDCKIPTISAVNGPAAGAGANLALAADVVIASEDAYFVQAFTRIGLIPDAGGTWMLPRQIGMARAMGASLFADKVSAKQAADWGMIYETAPAEEFARHWQARAAQLAQGPTETYRYVKDALHAAYDNDLDGQLALEAKLQGKCGKTRDFKEGVVAFLEKRPAVFEGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LVE3</accession>
    <name>A0A1M5LVE3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">N-methylhydantoinase B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0479</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68589.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898995.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0479"/>
    <dbReference type="EnsemblBacteria" id="SHG68589">
        <property type="protein sequence ID" value="SHG68589"/>
        <property type="gene ID" value="SAMN05444003_0479"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003692">
        <property type="entry name" value="Hydantoinase_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045079">
        <property type="entry name" value="Oxoprolinase_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11365">
        <property type="entry name" value="PTHR11365"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02538">
        <property type="entry name" value="Hydantoinase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hydantoinase_B" evidence="1">
        <location>
            <begin position="8"/>
            <end position="523"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG68589.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="569" mass="61017" checksum="1C58067D0DBEABDE" modified="2017-03-15" version="1">MAQTHSTVAYQVMWNRLISVVEEQAQALVRTAFSTSVREAGDLSAGVYDLHGNMLAQAVTGTPGHVNAMADAVAHFICRIGRENMFEGDVYITNDPWEGTGHLHDITMVTPSFHKGSLVGFLACTAHIVDIGGRGFGADAHSVYEEGLYIPIMKFADRGEVDDTLVRIIRGNVREPDQLIGDVYALATCNEIGHRRLIDMMEEFGLENLEGIAEFILTNSRKATLERIAALPQTSATGSMTMDGFDRPITLQVKVSVEGDRIVTDFEGTTGVDEKGINCPLVYTKAYACYALKVAIAPEIPNNAASLAPFEVVAPEGTIVNAVHPAPVALRHIVGHFVPDAVFDAFDKIVPLLVPAEGAGCLCNFQVSLRPRTDGPAPEDARRSEVLTFNSGGSGARPEFDGLNATAFPSGVMTMPIEATEHAGPVIIWRKELREGSGGAGKMRGGLGQHMEVGAMEGHEFDIQAMFDRRDHPARGRRGGQGGAATEIAQDDGRAMTVKGKQFVPHGRKVVMAFPGGAGYGDPKERSAELVKRDLARGYISANTAQEVYGLSGADVADVEEAVRKGEAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LVS7</accession>
    <name>A0A1M5LVS7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">tRNA 2-thiouridine synthesizing protein A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0503</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sulfur carrier protein TusA family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69121.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899026.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0503"/>
    <dbReference type="EnsemblBacteria" id="SHG69121">
        <property type="protein sequence ID" value="SHG69121"/>
        <property type="gene ID" value="SAMN05444003_0503"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.110.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001455">
        <property type="entry name" value="TusA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036868">
        <property type="entry name" value="TusA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01206">
        <property type="entry name" value="TusA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64307">
        <property type="entry name" value="SSF64307"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01148">
        <property type="entry name" value="UPF0033"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UPF0033" evidence="2">
        <location>
            <begin position="6"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS01148"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG69121.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="74" mass="7900" checksum="4D0C84585ECE4B14" modified="2017-03-15" version="1">MSDQTLDATGLLCPLPVLKARKRLQALQSGDVLTVLADDPAAVVDIPHFCAEAGHLLISQEDADGVQKYEIEKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LWF7</accession>
    <name>A0A1M5LWF7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Fumarate hydratase class II</fullName>
            <shortName evidence="2">Fumarase C</shortName>
            <ecNumber evidence="2">4.2.1.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Aerobic fumarase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="2">Iron-independent fumarase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">fumC</name>
        <name evidence="5" type="ORF">SAMN05444003_0509</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>(S)-malate = fumarate + H2O</text>
            <dbReference type="Rhea" id="RHEA:12460"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15589"/>
            <dbReference type="ChEBI" id="CHEBI:29806"/>
            <dbReference type="EC" id="4.2.1.2"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Carbohydrate metabolism; tricarboxylic acid cycle; (S)-malate from fumarate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="2">There are 2 substrate-binding sites: the catalytic A site, and the non-catalytic B site that may play a role in the transfer of substrate or product between the active site and the solvent. Alternatively, the B site may bind allosteric effectors.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.2" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69250.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900374.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0509"/>
    <dbReference type="EnsemblBacteria" id="SHG69250">
        <property type="protein sequence ID" value="SHG69250"/>
        <property type="gene ID" value="SAMN05444003_0509"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00223">
        <property type="reaction ID" value="UER01007"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045239">
        <property type="term" value="C:tricarboxylic acid cycle enzyme complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004333">
        <property type="term" value="F:fumarate hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006106">
        <property type="term" value="P:fumarate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01362">
        <property type="entry name" value="Fumarase_classII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.275.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00743">
        <property type="entry name" value="FumaraseC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005677">
        <property type="entry name" value="Fum_hydII"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024083">
        <property type="entry name" value="Fumarase/histidase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018951">
        <property type="entry name" value="Fumarase_C_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020557">
        <property type="entry name" value="Fumarate_lyase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000362">
        <property type="entry name" value="Fumarate_lyase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022761">
        <property type="entry name" value="Fumarate_lyase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008948">
        <property type="entry name" value="L-Aspartase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11444">
        <property type="entry name" value="PTHR11444"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10415">
        <property type="entry name" value="FumaraseC_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00206">
        <property type="entry name" value="Lyase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00149">
        <property type="entry name" value="FUMRATELYASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48557">
        <property type="entry name" value="SSF48557"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00979">
        <property type="entry name" value="fumC_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00163">
        <property type="entry name" value="FUMARATE_LYASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="domain" description="Lyase_1" evidence="3">
        <location>
            <begin position="13"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="domain" description="FumaraseC_C" evidence="4">
        <location>
            <begin position="408"/>
            <end position="460"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="2">
        <location>
            <begin position="98"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding (B site)" evidence="2">
        <location>
            <begin position="129"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="2">
        <location>
            <begin position="139"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="2">
        <location>
            <begin position="324"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="2">
        <location>
            <position position="188"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="318"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="187"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="319"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Important for catalytic activity" evidence="2">
        <location>
            <position position="331"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009084"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00743"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF10415"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG69250.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="463" mass="49486" checksum="13B06E7F9898C503" modified="2017-03-15" version="1">MSETRTETDSFGPLEVPADRYWGAQTQRSLQNFPIGWEKQPVAIVRALGVIKQACAMANKERGKLDAEKADAMIEAASEVVAGKLDDHFPLVVWQTGSGTQSNMNANEVISNRAIEILGGEIGSKEPVHPNDHCNMGQSSNDTFPTAMHIAVATTAHDVLIPGLEKLHAALAAKQAEFDHIIKIGRTHTMDATPLTLGQEFSGYVHQVAMGLRRVKAALPAIYELAQGGTAVGTGLNTPKGWGETVAKNMAEITGLPFVTAPNKFEALAAHDALVEMSGALKTVAASLYKIACDIRFLGSGPRCGLSELMLPENEPGSSIMPGKVNPTQVEAITQVCAHVMGNDAAVGFAGSQGHFELNVMKPMMAYNVLQSMQLIGDAASAFTDNCVVGIKADEGRIEQLLRESLMLVTALAPTIGYDNATTVAKTAHKNRTTLKEEAIKLGFVDEETFDKVVRPEDMIGPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LZ98</accession>
    <name>A0A1M5LZ98_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized conserved protein YcbK, DUF882 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0560</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70351.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899107.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0560"/>
    <dbReference type="EnsemblBacteria" id="SHG70351">
        <property type="protein sequence ID" value="SHG70351"/>
        <property type="gene ID" value="SAMN05444003_0560"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1380.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010275">
        <property type="entry name" value="DUF882"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009045">
        <property type="entry name" value="Hedgehog_sig/DD-Pept_Zn-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37425">
        <property type="entry name" value="PTHR37425"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05951">
        <property type="entry name" value="Peptidase_M15_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55166">
        <property type="entry name" value="SSF55166"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG70351.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="189" mass="20550" checksum="7FE7123562534750" modified="2017-03-15" version="1">MTGNTGTSISRRGVLGAFAATVIIAAPTFSNAAGFLRGSGDVRRLSMFSGRTGERINTVYWIDGEYISEALREINLFMRDWRTSEAISMDTRTIDIMSASARLLDTDQPYQLLSGYRSPQTNALLRSRSRGVARNSLHMKGQAADLRLAGRSVSQMARAAASCRAGGVGKYSGSNFVHMDCGVVRTWGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LZF4</accession>
    <name>A0A1M5LZF4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_0562</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70398.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899109.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0562"/>
    <dbReference type="EnsemblBacteria" id="SHG70398">
        <property type="protein sequence ID" value="SHG70398"/>
        <property type="gene ID" value="SAMN05444003_0562"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016410">
        <property type="term" value="F:N-acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009245">
        <property type="term" value="P:lipid A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd03352">
        <property type="entry name" value="LbH_LpxD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001451">
        <property type="entry name" value="Hexapep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018357">
        <property type="entry name" value="Hexapep_transf_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007691">
        <property type="entry name" value="LpxD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020573">
        <property type="entry name" value="UDP_GlcNAc_AcTrfase_non-rep"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43378">
        <property type="entry name" value="PTHR43378"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00132">
        <property type="entry name" value="Hexapep"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04613">
        <property type="entry name" value="LpxD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="SSF51161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00101">
        <property type="entry name" value="HEXAPEP_TRANSFERASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6 8" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="2" id="KW-0441">Lipid A biosynthesis</keyword>
    <keyword evidence="1" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="5" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="3 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="LpxD" evidence="7">
        <location>
            <begin position="22"/>
            <end position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF04613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG70398.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="353" mass="36253" checksum="806FAC1DF9AF77E9" modified="2017-03-15" version="1">MARRISEIAAALGAEAVGNVDLAVKRPQEPTSAGVNDLALAMSARYAGAVAATKAKAAILWKDADWQALGLDAAVLVERPRLAMAHLTQSFDTPASGDGVSELAQVSAKAHLDEDVSVGPFTTIADAAVVGSGTLVASHVSVADGAKIGRNCHIHPGVRIGRNVLIGDNVILQPNVVVGADGFSFVTEGLSNEERAFMSLAKEPLSPPDDAIRHRIHSLGSVIIGDDVEIGANSTVDAGTIRSTSVGRGTKIDNLVQVGHNVVVGEDCVLCAQAAVAGSTVLGDRSVLGGKSGVKDNVVVGKDVVLGGGAIVLGNVDDGHFVMGYPAVDMLDHRAQMRGLKSLPALLKRLRNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M074</accession>
    <name>A0A1M5M074_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Peptide/nickel transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0575</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70665.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899126.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0575"/>
    <dbReference type="EnsemblBacteria" id="SHG70665">
        <property type="protein sequence ID" value="SHG70665"/>
        <property type="gene ID" value="SAMN05444003_0575"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="17"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="68"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="102"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="132"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="205"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="243"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="268"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="305"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="342"/>
            <end position="365"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="408"/>
            <end position="429"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="449"/>
            <end position="472"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="208"/>
            <end position="472"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG70665.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="482" mass="52495" checksum="8CA81A8B491F3974" modified="2017-03-15" version="1">MEPLTWTGNVGDFLNPIFWIAAVILLVSVIAQIILSFFAEEMTLQANPDGTLMRRGGLFGLVERLTKYSFFAVVLIVLAYIILGVVLPYGSVGIVGNMAKQFTPVWLALIATFALSITFKRSLGLYGKLFDSTVGMIGFGLVMFWVFTAGFAGMFDMLATHDPLQQISGLKNKLPGVPLPEGVEGYPHYLLGGDNLARDVFSRMVYGSVIVIAIAPLATVFAFMVGITLGLPAGYYGGRLDTILSFLANLILAFPVILLFYLLVTPEIVATGIPTFMATVLFIFPLVFFGVLINSRYHTQPTQRTIMLAVVLGVLGLLYLSLISQEGTVFNFMPAALDLFDISSGILVVFVSVVFVNSPTVFRIVRGLALDLRTRDYVAAAQTRGESSWYVMLWEILPNARGPLIVDFCLRIGYTTILLGTLGFFGLGLPPESPDWGSTINEGRKLLLIFVHPALPPALALLSLVLGLNLLADGLREESLKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M0Y6</accession>
    <name>A0A1M5M0Y6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0586</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70906.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG70906">
        <property type="protein sequence ID" value="SHG70906"/>
        <property type="gene ID" value="SAMN05444003_0586"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="22"/>
            <end position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG70906.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="42" mass="4645" checksum="FB760609E37FC402" modified="2017-03-15" version="1">MQTLAEGYKGLSVFVRLNTDRMIYTLCLVIALYAGAYIGMIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M1C0</accession>
    <name>A0A1M5M1C0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ</fullName>
            <ecNumber evidence="9">4.2.1.59</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase</fullName>
            <shortName evidence="9">(3R)-hydroxymyristoyl-ACP dehydrase</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">Beta-hydroxyacyl-ACP dehydratase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">fabZ</name>
        <name evidence="10" type="ORF">SAMN05444003_0589</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8 9">Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>a (3R)-hydroxyacyl-[ACP] = a (2E)-enoyl-[ACP] + H2O</text>
            <dbReference type="Rhea" id="RHEA:13097"/>
            <dbReference type="Rhea" id="RHEA-COMP:9925"/>
            <dbReference type="Rhea" id="RHEA-COMP:9945"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:78784"/>
            <dbReference type="ChEBI" id="CHEBI:78827"/>
            <dbReference type="EC" id="4.2.1.59"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the thioester dehydratase family. FabZ subfamily.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.59" evidence="9"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70970.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899143.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0589"/>
    <dbReference type="EnsemblBacteria" id="SHG70970">
        <property type="protein sequence ID" value="SHG70970"/>
        <property type="gene ID" value="SAMN05444003_0589"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008659">
        <property type="term" value="F:(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008693">
        <property type="term" value="F:3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047451">
        <property type="term" value="F:3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004317">
        <property type="term" value="F:3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009245">
        <property type="term" value="P:lipid A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00406">
        <property type="entry name" value="FabZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013114">
        <property type="entry name" value="FabA_FabZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010084">
        <property type="entry name" value="FabZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30272">
        <property type="entry name" value="PTHR30272"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07977">
        <property type="entry name" value="FabA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01750">
        <property type="entry name" value="fabZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 9" id="KW-0441">Lipid A biosynthesis</keyword>
    <keyword evidence="4 9" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="6 9" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="7 9" id="KW-0456">Lyase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" evidence="9">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00025049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00406"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG70970.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="152" mass="16540" checksum="5AD851B371F0E1D2" modified="2017-03-15" version="1">MSTPTEADIQLIQKIIPHRYPFLLVDKVHSIDGTSSAIGIKNVTMNEPHFQGHFPGTPIMPGVTIIEAMAQTAAVMVGTTMGLTDGNMLIYFMSIDGCKFRRKVIPGDVLEMKIETTRGKPGAKVWRFKGVATVEGELAAEGEFAAMMDLQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M2G9</accession>
    <name>A0A1M5M2G9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0610</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG71514.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899162.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0610"/>
    <dbReference type="EnsemblBacteria" id="SHG71514">
        <property type="protein sequence ID" value="SHG71514"/>
        <property type="gene ID" value="SAMN05444003_0610"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Histidine kinase" evidence="4">
        <location>
            <begin position="134"/>
            <end position="350"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG71514.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="357" mass="38302" checksum="1E070CE7F79E48F7" modified="2017-03-15" version="1">MIENVNLWSSIPVPALLLNGDDTIAMSNSAAESFLNLSAKALFGSDLWEKVMVDAPLEDAYARAKDRRSPLFINDVDVGSGMGAPMLCNVQIAPLIGSDDMMLMLISPREIASRVNQNGNSNKAAKSAIGMAEMLAHEIKNPLAGITGAAQLLSMGLTPEDQEMTDLIVAESRRIVALLENVEQFGNQRPPELSSVNIHDILDRARQSASVGFGAHMFFVVDYDPSLPHAFADADQLQQVFLNLLKNASEAGHDGGSIKLRTFYDPSLRILQADGTQARLPLQIEIIDDGPGLPPDIANDIFEPFISGKENGTGLGLALVSKLLRDGGGWISVDSVPGQTKFRVSLPLAPKTDDGDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M362</accession>
    <name>A0A1M5M362_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Penicillin amidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_0619</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
        <text evidence="5">Binds 1 Ca(2+) ion per dimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase S45 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG71762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0619"/>
    <dbReference type="EnsemblBacteria" id="SHG71762">
        <property type="protein sequence ID" value="SHG71762"/>
        <property type="gene ID" value="SAMN05444003_0619"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016811">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017000">
        <property type="term" value="P:antibiotic biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1400.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.439.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014395">
        <property type="entry name" value="Pen/GL7ACA/AHL_acylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043147">
        <property type="entry name" value="Penicillin_amidase_A-knob"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023343">
        <property type="entry name" value="Penicillin_amidase_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043146">
        <property type="entry name" value="Penicillin_amidase_N_B-knob"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002692">
        <property type="entry name" value="S45"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34218">
        <property type="entry name" value="PTHR34218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01804">
        <property type="entry name" value="Penicil_amidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001227">
        <property type="entry name" value="Pen_acylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0106">Calcium</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0865">Zymogen</keyword>
    <feature type="active site" description="Nucleophile" evidence="4">
        <location>
            <position position="262"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="196"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="334"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="337"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="522"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006586"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR001227-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR001227-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG71762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="821" mass="91082" checksum="8C19B85B4EEA12EE" modified="2017-03-15" version="1">MIAFLFRWLLRLASLLVFLAVGAFALTYYFAARSLPDYDATYTVTGIDAPIEIVRDNANVPHIFGQSNNDIFFALGYAHAQDRMWQMTMLRRTIQGRLSELFGERTLPIDRFMRRLNLYNHAIRSVDAQDEETTLALRAYSDGVNAWFAEVNKGARGRGAPEMWLFNHAIAPWEPADSLAVMKLMAVQLSGHASYEVLRARVSLVTDEDRLRDILPDDPTQAIAELPEYASLMNDLSGFGFAAAPVSDPLSPIRPRNLAGASNAWAAGISRSATGSTLLANDPHMQLTAPTLWYLARLELERGGVIGGTIPGMPIVLVGRNVDLGWGLTSSYLDDQDLYIEEVNPDNPNQYRTPDGWADFEARDSIINVKDGIAETLKLRWTTNGPVLSPDQLQVGAVTPAGHVTSLAWTAFSDQDTSMSAAISMMQASSVTDAVEATRGIVAPSQNITLADRNNVAMVVAGANPNRSAEHQSQGRIPTFGYLAENRWDGFMPTDENPSFLNPNTGLIGNTNNKTIEQPFPDHISFRWGDTQRVQRWERLMQTREVHTRDSFIEAQLDSVSFTARSLLPLVGADLWFTSDAAPEGTIERRRQEALQLLADWNGEMNEHLPEPLIYAAWMRELQDRLIRDDLGMLAQEFKHVDPVFIERVFRDTDGASAWCDVIQSAPVETCTDIARQSLEDALIWLDENYGSTVATLRWGDAHEATHDHPVLGTAPLLNWFVNIRQSTSGGDNTLQRGRTSGLDPYPFHNVHAAGYRGVYDFADPDSSVFISATGQSGHPLSRYYDNLGELWRRGEYIPMSLDPALARGAALGVTTLIPEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M396</accession>
    <name>A0A1M5M396_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">GGDEF domain-containing protein, diguanylate cyclase (C-di-GMP synthetase) or its enzymatically inactive variants</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0618</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG71731.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG71731">
        <property type="protein sequence ID" value="SHG71731"/>
        <property type="gene ID" value="SAMN05444003_0618"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="48"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="2">
        <location>
            <begin position="108"/>
            <end position="241"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG71731.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="246" mass="26940" checksum="2C6A91451420BD35" modified="2017-03-15" version="1">MSKALSPSNRSFFQRESLVDFLLLFVLANVVFGFLDMVFGPFQGMNPVVRVAVLIAVSIGLCRLGATRFRSANSSISVDEINIEGWNDLTLEKQSFYAQLERPLRRQGNGYLMIIQANDISSIDGRYGKHVGDYFLSSLAKRLGPTVTEGDKIGRMDRILFGVFLSDRTQSEVELIAKRMCGSTLIPLADSADRARLSAFVGYTEVQSGEHVLDAMARAHQALAVAQRPESGRMASAAGRKIEAAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M3M8</accession>
    <name>A0A1M5M3M8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0623</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG71871.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899178.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0623"/>
    <dbReference type="EnsemblBacteria" id="SHG71871">
        <property type="protein sequence ID" value="SHG71871"/>
        <property type="gene ID" value="SAMN05444003_0623"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="5"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="39"/>
            <end position="46"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG71871.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="237" mass="25621" checksum="8C5D2D84A001A108" modified="2017-03-15" version="1">MSEPFLIGDTMTGGYGKGPDILHDCTIAVNPGEIAVIVGPNGAGKSTAMKAVFGMLEVRTGSVRLDGEDITSLSPQDRVIKGMGFVPQVRNIFTSLTVEENLEMGAFIRKDDFKDTMAQVYDLFPILKEKRLQAAGELSGGQRQQVAVGRALMTQPKVLMLDEPTAGVSPIVMDELFDRIIEVARTGIPILMVEQNARQALEIADKGYVLVQGRNAHTGTGKELLADEEVRRSFLGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MAN9</accession>
    <name>A0A1M5MAN9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">GTPase Obg</fullName>
            <ecNumber evidence="6">3.6.5.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">GTP-binding protein Obg</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">obg</name>
        <name evidence="9" type="ORF">SAMN05444003_0730</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="6">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.</text>
    </comment>
    <dbReference type="EC" id="3.6.5.-" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899378.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0730"/>
    <dbReference type="EnsemblBacteria" id="SHG74350">
        <property type="protein sequence ID" value="SHG74350"/>
        <property type="gene ID" value="SAMN05444003_0730"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042254">
        <property type="term" value="P:ribosome biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01898">
        <property type="entry name" value="Obg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.210.12">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01454">
        <property type="entry name" value="GTPase_Obg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031167">
        <property type="entry name" value="G_OBG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014100">
        <property type="entry name" value="GTP-bd_Obg/CgtA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006074">
        <property type="entry name" value="GTP1-OBG_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006169">
        <property type="entry name" value="GTP1_OBG_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036726">
        <property type="entry name" value="GTP1_OBG_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045086">
        <property type="entry name" value="OBG_GTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11702">
        <property type="entry name" value="PTHR11702"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01018">
        <property type="entry name" value="GTP1_OBG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002401">
        <property type="entry name" value="GTP_bd_Obg/CgtA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00326">
        <property type="entry name" value="GTP1OBG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82051">
        <property type="entry name" value="SSF82051"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02729">
        <property type="entry name" value="Obg_CgtA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51710">
        <property type="entry name" value="G_OBG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00905">
        <property type="entry name" value="GTP1_OBG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51883">
        <property type="entry name" value="OBG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 6" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="3 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Obg" evidence="8">
        <location>
            <begin position="1"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="domain" description="OBG-type G" evidence="7">
        <location>
            <begin position="160"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="166"/>
            <end position="173"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="173"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="191"/>
            <end position="195"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="193"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="212"/>
            <end position="215"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="279"/>
            <end position="282"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="308"/>
            <end position="310"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01454"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51710"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG74350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="348" mass="37390" checksum="48EE1B071E243B91" modified="2017-03-15" version="1">MKFLDLAKVYIRSGGGGAGCISFRREKYIEYGGPDGGDGGNGGSVIAEAVDGLNTLIDFRYQQHFFAKNGQHGMGSQRTGKSGDDIILRLPVGTEILDEDEETVLVDMTEVGQRFVIAKGGNGGWGNLHFKSATNQAPRRANPGQEGIERTIWLRLKLIADVGLLGLPNAGKSTFLAATSNARPKIADYPFTTLVPNLGVVGVDNVEFVVADIPGLIDGASEGRGLGVLFLGHVERCAVLLHLIDGTSGDPVGDYRTIIQELEAYGGGLADKPRVTVLNKIDALDAEERAFLKEEIENETGVSLKLMSGASTEGTQDVLRALRSEIDDNRLREKKALEDPSEDEPWQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MBW0</accession>
    <name>A0A1M5MBW0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0750</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74790.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899409.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0750"/>
    <dbReference type="EnsemblBacteria" id="SHG74790">
        <property type="protein sequence ID" value="SHG74790"/>
        <property type="gene ID" value="SAMN05444003_0750"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016646">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002563">
        <property type="entry name" value="Flavin_Rdtase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01613">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00903">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavin_Reduct" evidence="1">
        <location>
            <begin position="13"/>
            <end position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG74790.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="305" mass="33223" checksum="458A93048A1C5505" modified="2017-03-15" version="1">MTHLDTRVLRNAFGSFMTGVTVITTRDANDTPLGFTANSFSSVSLDPPLLLFCPGKFLSSYKAFATFEHFAVNVLAEGQEDVSNTFASYNGDRFARVPHQLDANAMPLIDGATAQFSCTTHDVLDAGDHCVLIGRVDTFQHQDKAGLGYAGGKYFSLGLERQVADTADKQAVCGALIEVDGKILLEQVSEGFQPPHIRTTGRSNLRKTLHQALDDKGISVSLGAAYSVFDDATTHYSYILATASKLPQDNPFFAVPAQELSTLTYTTQPIADMMQRYAVEAETRDFALYLGDDRQGETHALSERS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MFQ3</accession>
    <name>A0A1M5MFQ3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0807</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76076.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899482.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0807"/>
    <dbReference type="EnsemblBacteria" id="SHG76076">
        <property type="protein sequence ID" value="SHG76076"/>
        <property type="gene ID" value="SAMN05444003_0807"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025597">
        <property type="entry name" value="DUF4345"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14248">
        <property type="entry name" value="DUF4345"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="45"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="70"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="97"/>
            <end position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG76076.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="118" mass="12439" checksum="9D765C87E437BC5D" modified="2017-03-15" version="1">MIDILNIIAAVLTIIFGSFGFLAPRFTMGALYLQTDGNTMGLSEIRASVGGLFVVTGIACLLLGTPESYFMLGVAYVGAAAGRLLSLVLDKPPFAKAFIYFAIEAVLAVWLVAANYPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MHW3</accession>
    <name>A0A1M5MHW3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7 8">Protein RecA</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7 8">Recombinase A</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">recA</name>
        <name evidence="13" type="ORF">SAMN05444003_0834</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 9">Belongs to the RecA family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76747.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899527.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0834"/>
    <dbReference type="EnsemblBacteria" id="SHG76747">
        <property type="protein sequence ID" value="SHG76747"/>
        <property type="gene ID" value="SAMN05444003_0834"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140664">
        <property type="term" value="F:ATP-dependent DNA damage sensor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003684">
        <property type="term" value="F:damaged DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009432">
        <property type="term" value="P:SOS response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00983">
        <property type="entry name" value="recA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00268">
        <property type="entry name" value="RecA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013765">
        <property type="entry name" value="DNA_recomb/repair_RecA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020584">
        <property type="entry name" value="DNA_recomb/repair_RecA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020588">
        <property type="entry name" value="RecA_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023400">
        <property type="entry name" value="RecA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020587">
        <property type="entry name" value="RecA_monomer-monomer_interface"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45900">
        <property type="entry name" value="PTHR45900"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00154">
        <property type="entry name" value="RecA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00142">
        <property type="entry name" value="RECA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54752">
        <property type="entry name" value="SSF54752"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02012">
        <property type="entry name" value="tigrfam_recA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00321">
        <property type="entry name" value="RECA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50162">
        <property type="entry name" value="RECA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50163">
        <property type="entry name" value="RECA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 9" id="KW-0227">DNA damage</keyword>
    <keyword evidence="6 7 9" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="7 8" id="KW-0234">DNA repair</keyword>
    <keyword evidence="5 7 9" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3 7 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 8" id="KW-0742">SOS response</keyword>
    <feature type="domain" description="RECA_2" evidence="11">
        <location>
            <begin position="49"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="domain" description="RECA_3" evidence="12">
        <location>
            <begin position="213"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="343"/>
            <end position="362"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="79"/>
            <end position="86"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00015553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000526"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU004527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50162"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHG76747.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="362" mass="39007" checksum="24D0FAA81B09F716" modified="2017-03-15" version="1">MAATAELLSMSDKKTSDKQKALDSALAQIERQFGKGSIMKLGGENQFQDIEATSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLTLHAVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLISQPDTGEQALEIVDTLVRSGAVNLIVVDSVAALTPKSELEGDMGDSSVGVHARLMSQAMRKLTGSINRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRDEVVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKNGELLDLGVKAGVVEKSGAWFSYGDERIGQGRENSKMFLKENPSVAWEIEDKIRAAHGLDFDMAPNDPDKDEDDSLVEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MLC7</accession>
    <name>A0A1M5MLC7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0881</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77852.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900411.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0881"/>
    <dbReference type="EnsemblBacteria" id="SHG77852">
        <property type="protein sequence ID" value="SHG77852"/>
        <property type="gene ID" value="SAMN05444003_0881"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011992">
        <property type="entry name" value="EF-hand-dom_pair"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018247">
        <property type="entry name" value="EF_Hand_1_Ca_BS"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47473">
        <property type="entry name" value="SSF47473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00018">
        <property type="entry name" value="EF_HAND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012883751" evidence="1">
        <location>
            <begin position="22"/>
            <end position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG77852.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="81" mass="8576" checksum="7616573454703DDD" modified="2017-03-15" version="1">MTKATRTLAFVTIFAATPVLAMDAEIDADADGMYSYPELQTAMPEMTEDQFIVMDVNGDGLLDETEVAAATEAGLLPATEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MQL4</accession>
    <name>A0A1M5MQL4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Sarcosine oxidase subunit gamma</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0968</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79700.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899714.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0968"/>
    <dbReference type="EnsemblBacteria" id="SHG79700">
        <property type="protein sequence ID" value="SHG79700"/>
        <property type="gene ID" value="SAMN05444003_0968"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007375">
        <property type="entry name" value="SoxG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027266">
        <property type="entry name" value="TrmE/GcvT_dom1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04268">
        <property type="entry name" value="SoxG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG79700.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="187" mass="19896" checksum="43D61885F112C4F8" modified="2017-03-15" version="1">MSNVVSALDGQVAPGEVTVRELGLRGMITLRGDLSSRKLQNICKKLTGVAFPKQGGVASEGDKGLAWMSPDEVLVMVPHAEAAPAVAAIEAALKGEHFLAVNVSDARAVFSVQGAFSREVIAKLAPADLHPDRFKEGMMRRTRLGQVAAAFWMVDEETFCVICFRSVAEYTFGLLKASAGAGEVGYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MR39</accession>
    <name>A0A1M5MR39_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0967</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79676.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899713.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG79676">
        <property type="protein sequence ID" value="SHG79676"/>
        <property type="gene ID" value="SAMN05444003_0967"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012544927" evidence="1">
        <location>
            <begin position="19"/>
            <end position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG79676.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="121" mass="13365" checksum="92881F85E9396D5A" modified="2017-03-15" version="1">MKLILNVWYLAIAFSANACSPLDTSEPVTNVEMASGAESRAIADLPFPANQIKVGMSHSNVLQLLEGTFERSFNPRIMALGAWCEGYTIDHQSSQEFLQIHFTDDKVTRINVVASDVCVIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MTD2</accession>
    <name>A0A1M5MTD2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">NADH dehydrogenase subunit M</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0991</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 4">Membrane</location>
            <topology evidence="2 4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the complex I subunit 4 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80169.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0991"/>
    <dbReference type="EnsemblBacteria" id="SHG80169">
        <property type="protein sequence ID" value="SHG80169"/>
        <property type="gene ID" value="SAMN05444003_0991"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008137">
        <property type="term" value="F:NADH dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042773">
        <property type="term" value="P:ATP synthesis coupled electron transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010227">
        <property type="entry name" value="NADH_Q_OxRdtase_chainM/4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003918">
        <property type="entry name" value="NADH_UbQ_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001750">
        <property type="entry name" value="ND/Mrp_mem"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43507">
        <property type="entry name" value="PTHR43507"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00361">
        <property type="entry name" value="Proton_antipo_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01437">
        <property type="entry name" value="NUOXDRDTASE4"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01972">
        <property type="entry name" value="NDH_I_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="36"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="84"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="113"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="137"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="166"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="206"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="252"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="284"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="312"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="343"/>
            <end position="361"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="381"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="418"/>
            <end position="438"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="463"/>
            <end position="481"/>
        </location>
    </feature>
    <feature type="domain" description="Proton_antipo_M" evidence="6">
        <location>
            <begin position="130"/>
            <end position="429"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009025"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU000320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00361"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG80169.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="513" mass="56449" checksum="5A3A072AB91F7D88" modified="2017-03-15" version="1">MGNLLSLTTFIPLLGALILAIFLRGDDAAAQRNAKWVALATTIATFVVSLFILFEFNPQDTGFQMVEEREWLLGLKYKMGVDGISILFVMLTTFLMPIVIGACWDVKVRVKEYMIAFLFLETLMLGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGANRIYASFKFFLYTFLGSVLMLVAMVAMYVDAGTTDIETLLTHSFGSETFSLLGIQIIGGAQTLMWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGSEVMGPLVLWLSAIAIVYTSLVALVQEDMKKLIAYSSVAHMGYVTMGIFAVNQQGIDGAIFQMLSHGFISGALFLCVGVIYDRMHTREIDAYGGLVNRMPAYALIFCFFTMANVGLPGTSGFVGEFLTLMGVFQVNTWVAMVATTGVILSAAYALWLYRRVVMGDLIKESLKTIKDITPRERWLFTPLVAMTLLLGVYPSLVTDIIGPSVEALIGQYDTATAAFDAANQYAQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MTU7</accession>
    <name>A0A1M5MTU7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1010</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80552.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899753.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG80552">
        <property type="protein sequence ID" value="SHG80552"/>
        <property type="gene ID" value="SAMN05444003_1010"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="41"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="67"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="91"/>
            <end position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG80552.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="115" mass="12463" checksum="6571A89DA5D336AD" modified="2017-03-15" version="1">MKIVRIIGYVIGFGLLAFGAWFLIAPEAALAETSHRLDTLPYVMGGRYAFFGAMLIGALYHGDPTVTAYLLAGFAGLGFFDAILYASFDPWPHLIVGVLSLAASLFFFQHRKSAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MW27</accession>
    <name>A0A1M5MW27_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1052</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81417.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1052"/>
    <dbReference type="EnsemblBacteria" id="SHG81417">
        <property type="protein sequence ID" value="SHG81417"/>
        <property type="gene ID" value="SAMN05444003_1052"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="35"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG81417.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="120" mass="12766" checksum="675401507B1E724F" modified="2017-03-15" version="1">MTAVDVNPRPWSGRSNPVSNVSERGRRWVSDFARRTQRPQPTPSRGHGITVNGLSEPNVTVLVTIAGQALSVPSDENGQWSAAFVDIQVPAGTIEIPVKAMTTDASGQTTTAEGIVQVET</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MXK8</accession>
    <name>A0A1M5MXK8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1078</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81947.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900427.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1078"/>
    <dbReference type="EnsemblBacteria" id="SHG81947">
        <property type="protein sequence ID" value="SHG81947"/>
        <property type="gene ID" value="SAMN05444003_1078"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016884">
        <property type="term" value="F:carbon-nitrogen ligase activity, with glutamine as amido-N-donor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1510.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003789">
        <property type="entry name" value="Asn/Gln_tRNA_amidoTrase-B-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023168">
        <property type="entry name" value="GatB_Yqey_C_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019004">
        <property type="entry name" value="YqeY/Aim41"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042184">
        <property type="entry name" value="YqeY/Aim41_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28055">
        <property type="entry name" value="PTHR28055"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09424">
        <property type="entry name" value="YqeY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89095">
        <property type="entry name" value="SSF89095"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG81947.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="152" mass="16585" checksum="0339571021AD1FF9" modified="2017-03-15" version="1">MDMRTRVTAALKDAMKSKEVDRLSTLRLINAAIKDKDIALRGEGDDKTVTDADVLAIMGRMVKQRQESARAYDEGGRLELAEKERAEIKVIEEFLPKQLSEAETEAAVDAAISAVGAESIRDMGKVMGELKGKYTGQMDFGKVGPLVKGRLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MYI6</accession>
    <name>A0A1M5MYI6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1080</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81989.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899813.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1080"/>
    <dbReference type="EnsemblBacteria" id="SHG81989">
        <property type="protein sequence ID" value="SHG81989"/>
        <property type="gene ID" value="SAMN05444003_1080"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13632">
        <property type="entry name" value="Glyco_trans_2_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="132"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="156"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="445"/>
            <end position="470"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="490"/>
            <end position="509"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="521"/>
            <end position="541"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_trans_2-like" evidence="2">
        <location>
            <begin position="284"/>
            <end position="474"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13632"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG81989.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="565" mass="63264" checksum="A1A3618FE99039F7" modified="2017-03-15" version="1">MFATRRIKSDVPPSAESAASQAAVRSSLVDPIAEPPDMRLLALADPQFCIRYSLLPWRAFGDTTVLLGTDLTLAQEQPEMVEARFGRFILLKADGEKLWTFLLETFRSNLAYDAETTLDEADSCRTWRSKRAAVFALVACSLGILCAVFFPLLTFGIAFGWVVLILLLGTALKPCSLCQKANPQENLGLALRDDELPTISLLVPLFREADMTGPLTSRLTKLDYPRGKLDLCFVVEDDDLVTKSSISKQKLPDWMRVIEAPKGKLRTKPRALNYALNFVSGSIVGVYDAEDAPESDQLRHVAETFARADPDVACVQGRLDYYNASGNWLSRCFTLEYASWFRVILPGYAKMGLLVPLGGTTLFFCRDTLNELGSWDAHNVTEDADLGVRLARHGYRTVFMPSVTNEEANARAWPWIKQRSRWLKGYAVTYAVHMRRPLELFRQLGAWRFFGFQVLFLGTLSQFLLAPLLWTVVVIPFGLPHPLFSLLSGSQFVALTAIFLLSTCVNLAANCIGAHRAGKSWLMKWAPTMVFYFPLATLGALKGLSELFWRPFFWDKTAHGIELSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MYL1</accession>
    <name>A0A1M5MYL1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, GntR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1081</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82009.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900428.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1081"/>
    <dbReference type="EnsemblBacteria" id="SHG82009">
        <property type="protein sequence ID" value="SHG82009"/>
        <property type="gene ID" value="SAMN05444003_1081"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011711">
        <property type="entry name" value="GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008920">
        <property type="entry name" value="TF_FadR/GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07729">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00035">
        <property type="entry name" value="HTHGNTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00895">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48008">
        <property type="entry name" value="SSF48008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="4">
        <location>
            <begin position="5"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG82009.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="217" mass="24391" checksum="08B6D3E7518A6C2A" modified="2017-03-15" version="1">MRDRTLGQRDAYDLILEAIDSHIYKPGDRLVESDLAEKFGVSRTPVREALQRLETQSLLTRDGRSLIVASLDHTQLSELYVVRGELEGLAARLASRHATPEEVRVLRNMLEADKKLIDDPEGLSRANRRFHKQIHLASHNRFLVQQLDLVHRSMALLASTSIKAEGRGADTLEEHEAIVQAIETGNGDAAYQALRDHISAAYEIRLRLDAEAVEADR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N0T8</accession>
    <name>A0A1M5N0T8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized Fe-S cluster protein YjdI</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1124</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83065.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899850.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1124"/>
    <dbReference type="EnsemblBacteria" id="SHG83065">
        <property type="protein sequence ID" value="SHG83065"/>
        <property type="gene ID" value="SAMN05444003_1124"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043231">
        <property type="term" value="C:intracellular membrane-bounded organelle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.5.90">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010693">
        <property type="entry name" value="Divergent_4Fe-4S_mono-cluster"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018967">
        <property type="entry name" value="FeS-contain_CDGSH-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042216">
        <property type="entry name" value="MitoNEET_CISD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06902">
        <property type="entry name" value="Fer4_19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09360">
        <property type="entry name" value="zf-CDGSH"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00704">
        <property type="entry name" value="ZnF_CDGSH"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ZnF_CDGSH" evidence="3">
        <location>
            <begin position="93"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="domain" description="ZnF_CDGSH" evidence="3">
        <location>
            <begin position="161"/>
            <end position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG83065.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="210" mass="22639" checksum="8AFEE097CD123E37" modified="2017-03-15" version="1">MRRKEYVGKDITVTFDMSKCIHARNCFLKLPEAFDPAQRPWVQPDNAPAEEIASMIRSCPSGALAFRYNTGAEEAPPKINRIAVLENGPLAVAGDMDVEGEDMTRATLCRCGLSKNKPFCDYSHMEAGFTASGEPVAKVPENIDEQGGPIAASRIPDGPLKVAGNVELTTGTGHKIVKGKNVFLCRCGASQNKPFCDGSHKGIAFKDPVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N257</accession>
    <name>A0A1M5N257_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">2-dehydro-3-deoxyphosphooctonate aldolase</fullName>
            <ecNumber evidence="6">2.5.1.55</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">3-deoxy-D-manno-octulosonic acid 8-phosphate synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">KDO-8-phosphate synthase</fullName>
            <shortName evidence="6">KDO 8-P synthase</shortName>
            <shortName evidence="6">KDOPS</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Phospho-2-dehydro-3-deoxyoctonate aldolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">kdsA</name>
        <name evidence="8" type="ORF">SAMN05444003_1132</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>D-arabinose 5-phosphate + H2O + phosphoenolpyruvate = 3-deoxy-alpha-D-manno-2-octulosonate-8-phosphate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:14053"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57693"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="ChEBI" id="CHEBI:85985"/>
            <dbReference type="EC" id="2.5.1.55"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Bacterial outer membrane biogenesis; lipopolysaccharide biosynthesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4 6">Carbohydrate biosynthesis; 3-deoxy-D-manno-octulosonate biosynthesis; 3-deoxy-D-manno-octulosonate from D-ribulose 5-phosphate: step 2/3.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5 6">Belongs to the KdsA family.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.55" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83279.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899857.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1132"/>
    <dbReference type="EnsemblBacteria" id="SHG83279">
        <property type="protein sequence ID" value="SHG83279"/>
        <property type="gene ID" value="SAMN05444003_1132"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00030"/>
    <dbReference type="UniPathway" id="UPA00357">
        <property type="reaction ID" value="UER00474"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008676">
        <property type="term" value="F:3-deoxy-8-phosphooctulonate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019294">
        <property type="term" value="P:keto-3-deoxy-D-manno-octulosonic acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00056">
        <property type="entry name" value="KDO8P_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006218">
        <property type="entry name" value="DAHP1/KDSA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006269">
        <property type="entry name" value="KDO8P_synthase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21057">
        <property type="entry name" value="PTHR21057"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00793">
        <property type="entry name" value="DAHP_synth_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01362">
        <property type="entry name" value="KDO8P_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-0448">Lipopolysaccharide biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DAHP_synth_1" evidence="7">
        <location>
            <begin position="13"/>
            <end position="273"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004756"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00010499"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG83279.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="281" mass="30390" checksum="67364120982A97A2" modified="2017-03-15" version="1">MATVTLGDIDFDNQKPLVLIGGMNVLESRDLALQVAESYVEVTEKLGIPYVFKASFDKANRSSINSYRGPGLDEGIKIFRDIKAAFDVPILTDVHEIHQAQPIAEVCDILQIPAFLARQTDLVTAIAKTGAVVNVKKPQFMSPPQIGHIVEKINEAGNDQILLCERGTNFGYDNLVVDMLGFRTMKSVSNDAPIIFDVTHALQMREVGAAASGGRREQVAELGRAGLAVGISGLFLESHPNPDEALCDGPSALPLHQLEAFLTQMKAVDDLVKSLPGRENG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N261</accession>
    <name>A0A1M5N261_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Zn-dependent dipeptidase, dipeptidase homolog</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1125</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83093.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899851.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1125"/>
    <dbReference type="EnsemblBacteria" id="SHG83093">
        <property type="protein sequence ID" value="SHG83093"/>
        <property type="gene ID" value="SAMN05444003_1125"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070573">
        <property type="term" value="F:metallodipeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008257">
        <property type="entry name" value="Pept_M19"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10443">
        <property type="entry name" value="PTHR10443"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01244">
        <property type="entry name" value="Peptidase_M19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51365">
        <property type="entry name" value="RENAL_DIPEPTIDASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG83093.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="391" mass="42232" checksum="E666A7C601CEE756" modified="2017-03-15" version="1">MRTFGKWLGRFFLLIVIAVGAFLIFAPGYVERGRNAVAEHDPYVISDAAETLHADLLIGDWHADPTLWKRDLSKRADRGHTDIPRLIEGNVAVQVFTAVTKSPAGQNNEQNSAEAFDNITPLAIGQLWPPRTWGSLAERALYQGEKLEELVEDADGRFRLIRNRADLDRLLTDREAGSELVGGIFGIEGGHALEGDMSNLDRLEDQGLRLVGLHHFFDNELGGSLHGISNAGLTDFGREVVNEVVARGMILDVAHSSPQVVKEVIEMTDIPLVLSHGGIFSHCSTARNLPDDLMQDLAATGGVIGIGFWDSASCAISPDGVAASIKAAVDLLGEDHVSLGSDFDGSVQTGFDASKLAAVTDALLRAGLTEAQIRKIMGENMIRVLRARLAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N5K2</accession>
    <name>A0A1M5N5K2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Fumarylpyruvate hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1176</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84273.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1176"/>
    <dbReference type="EnsemblBacteria" id="SHG84273">
        <property type="protein sequence ID" value="SHG84273"/>
        <property type="gene ID" value="SAMN05444003_1176"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.850.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011234">
        <property type="entry name" value="Fumarylacetoacetase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036663">
        <property type="entry name" value="Fumarylacetoacetase_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01557">
        <property type="entry name" value="FAA_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56529">
        <property type="entry name" value="SSF56529"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAA_hydrolase" evidence="1">
        <location>
            <begin position="27"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG84273.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="219" mass="23517" checksum="0BB7A77677BE6279" modified="2017-03-15" version="1">MSPTVFPPTPTPLVPVVSRAEMFPVGRIFCVGRNYAAHAAEMGNTVDRSAPFYFTKSPASVVLSGLEIPFPSMTSDLHHEMELAVYYGEDGIFGYGCSLDLTRRDLQAKAKEKAKPWSVAKDFENSAVLGAITEAGDVGSIGAQSIQLHVNGEIRQDASLAEMIHDVPAILSDLSQYYQLQAGDVILTGTPAGVGPLFRGDHAVGRIEGLEPVEIRIQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N5L0</accession>
    <name>A0A1M5N5L0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Proline--tRNA ligase</fullName>
            <ecNumber evidence="9">6.1.1.15</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Prolyl-tRNA synthetase</fullName>
            <shortName evidence="9">ProRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">proS</name>
        <name evidence="11" type="ORF">SAMN05444003_1202</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>ATP + L-proline + tRNA(Pro) = AMP + diphosphate + L-prolyl-tRNA(Pro)</text>
            <dbReference type="Rhea" id="RHEA:14305"/>
            <dbReference type="Rhea" id="RHEA-COMP:9700"/>
            <dbReference type="Rhea" id="RHEA-COMP:9702"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:60039"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78532"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.15"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="2 9">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the class-II aminoacyl-tRNA synthetase family. ProS type 2 subfamily.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.15" evidence="9"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84860.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899917.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1202"/>
    <dbReference type="EnsemblBacteria" id="SHG84860">
        <property type="protein sequence ID" value="SHG84860"/>
        <property type="gene ID" value="SAMN05444003_1202"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004827">
        <property type="term" value="F:proline-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006433">
        <property type="term" value="P:prolyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00861">
        <property type="entry name" value="ProRS_anticodon_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00779">
        <property type="entry name" value="ProRS_core_prok"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.800">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01570">
        <property type="entry name" value="Pro_tRNA_synth_type2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002314">
        <property type="entry name" value="aa-tRNA-synt_IIb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004154">
        <property type="entry name" value="Anticodon-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036621">
        <property type="entry name" value="Anticodon-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002316">
        <property type="entry name" value="Pro-tRNA-ligase_IIa"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004500">
        <property type="entry name" value="Pro-tRNA-synth_IIa_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023716">
        <property type="entry name" value="Prolyl-tRNA_ligase_IIa_type2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044140">
        <property type="entry name" value="ProRS_anticodon_short"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033730">
        <property type="entry name" value="ProRS_core_prok"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03129">
        <property type="entry name" value="HGTP_anticodon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00587">
        <property type="entry name" value="tRNA-synt_2b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01046">
        <property type="entry name" value="TRNASYNTHPRO"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00409">
        <property type="entry name" value="proS_fam_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9 11" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="6 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7 9" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AA_TRNA_LIGASE_II" evidence="10">
        <location>
            <begin position="48"/>
            <end position="341"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01570"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG84860.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="446" mass="50502" checksum="B47B0F5BF1F7C9BD" modified="2017-03-15" version="1">MRMSRYFLPVLKETPREAQIVSHRFMLQAGMIKQSSAGIYSWLPLGYKVLKKIEDIVHEEQIKAGHHPMLMPTIQSADLWRESGRYDAYGAEMLRITDRHERDMLYTPTAEELITDIFRANVTSYKDLPLTMYQIQWKFRDEVRPRFGVMRGREFYMKDGYNFDLTKEDALHAYNRHLVSYLRTYERMGLKAIPMRADSGPIGGEDTHEFLVLAETGESEVFYDSAVTDLTFGDREIDYDDKAACAAVMEEFTTKYARTDETHDEALFNEIPEERRMKARGIEVGQIFYFGTKYSDALNAAVDDGQGSKVNVHMGSHGIGVSRLLGAIIEASHDENGIIWPEGVTPFHVGILNMRSGDEAADAACEDLYKQITALGLEPLYDDRDERAGAKFGTMDMIGLPWRITVGPRGLKNGVVEVTCRRTGESEEMPPADAVAKIAKIYEGIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N5Z1</accession>
    <name>A0A1M5N5Z1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncaracterized surface protein containing fasciclin (FAS1) repeats</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1203</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84877.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900440.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1203"/>
    <dbReference type="EnsemblBacteria" id="SHG84877">
        <property type="protein sequence ID" value="SHG84877"/>
        <property type="gene ID" value="SAMN05444003_1203"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036378">
        <property type="entry name" value="FAS1_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000782">
        <property type="entry name" value="FAS1_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02469">
        <property type="entry name" value="Fasciclin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00554">
        <property type="entry name" value="FAS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82153">
        <property type="entry name" value="SSF82153"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50213">
        <property type="entry name" value="FAS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012431956" evidence="1">
        <location>
            <begin position="23"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="domain" description="FAS1" evidence="2">
        <location>
            <begin position="22"/>
            <end position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG84877.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="169" mass="17431" checksum="4F36F0AFB5A2F41C" modified="2017-03-15" version="1">MSFKTMIAAAATAVTFAGAANAASIAEIASGDERFSTLVAAVSAAGLVETLAGPGNFTVYAPVNEAFAALPEGTVETLLQPENKDQLTNVLLYHVDDRVLKSNMFAAGANYYKPILESERLCINAGNGVTIADGTGEVANVVIADIVADNGVIHVIDKVLLPGTRPACH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N970</accession>
    <name>A0A1M5N970_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C</fullName>
            <shortName evidence="1">Asp/Glu-ADT subunit C</shortName>
            <ecNumber evidence="1">6.3.5.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">gatC</name>
        <name evidence="2" type="ORF">SAMN05444003_1254</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O + L-aspartyl-tRNA(Asn) + L-glutamine = ADP + 2 H(+) + L-asparaginyl-tRNA(Asn) + L-glutamate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:14513"/>
            <dbReference type="Rhea" id="RHEA-COMP:9674"/>
            <dbReference type="Rhea" id="RHEA-COMP:9677"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:78515"/>
            <dbReference type="ChEBI" id="CHEBI:78516"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O + L-glutamine + L-glutamyl-tRNA(Gln) = ADP + H(+) + L-glutamate + L-glutaminyl-tRNA(Gln) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:17521"/>
            <dbReference type="Rhea" id="RHEA-COMP:9681"/>
            <dbReference type="Rhea" id="RHEA-COMP:9684"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:78520"/>
            <dbReference type="ChEBI" id="CHEBI:78521"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Heterotrimer of A, B and C subunits.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the GatC family.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.-" evidence="1"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86047.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899959.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1254"/>
    <dbReference type="EnsemblBacteria" id="SHG86047">
        <property type="protein sequence ID" value="SHG86047"/>
        <property type="gene ID" value="SAMN05444003_1254"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050566">
        <property type="term" value="F:asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050567">
        <property type="term" value="F:glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006450">
        <property type="term" value="P:regulation of translational fidelity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00122">
        <property type="entry name" value="GatC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003837">
        <property type="entry name" value="Asp/Glu-ADT_csu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036113">
        <property type="entry name" value="Asp/Glu-ADT_sf_sub_c"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15004">
        <property type="entry name" value="PTHR15004"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02686">
        <property type="entry name" value="Glu-tRNAGln"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141000">
        <property type="entry name" value="SSF141000"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00135">
        <property type="entry name" value="gatC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0436">Ligase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="1" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG86047.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="95" mass="10480" checksum="DA4A279CBA01BFA6" modified="2017-03-15" version="1">MSIDTETARRVAKLARIKVEDDALPALAQEFSAILGFIEQLNEVDVDGVEPMTSVTPQRLKRREDVVTDGDQQPKVLANAPDSREGFFAVPKVVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NDT9</accession>
    <name>A0A1M5NDT9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1353</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87680.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900044.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1353"/>
    <dbReference type="EnsemblBacteria" id="SHG87680">
        <property type="protein sequence ID" value="SHG87680"/>
        <property type="gene ID" value="SAMN05444003_1353"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="49"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG87680.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="114" mass="12365" checksum="DDCB839C2782EAC9" modified="2017-03-15" version="1">MTTAQVPFQKRLRRIVREHQRMSNGATHVMRADGLIVARPRVYNPKFPLRGLVLLLGAAILFKGFIYASLGSATYADRVGQLASGSIAEQAGAWVMQPDLATLAVAQFLNAVGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NI15</accession>
    <name>A0A1M5NI15_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Magnesium chelatase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1428</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the Mg-chelatase subunits D/I family. ComM subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89107.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900113.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1428"/>
    <dbReference type="EnsemblBacteria" id="SHG89107">
        <property type="protein sequence ID" value="SHG89107"/>
        <property type="gene ID" value="SAMN05444003_1428"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032508">
        <property type="term" value="P:DNA duplex unwinding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045006">
        <property type="entry name" value="CHLI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001208">
        <property type="entry name" value="MCM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004482">
        <property type="entry name" value="Mg_chelat-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025158">
        <property type="entry name" value="Mg_chelat-rel_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000523">
        <property type="entry name" value="Mg_chelatse_chII-like_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32039">
        <property type="entry name" value="PTHR32039"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32039:SF7">
        <property type="entry name" value="PTHR32039:SF7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01078">
        <property type="entry name" value="Mg_chelatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13335">
        <property type="entry name" value="Mg_chelatase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01657">
        <property type="entry name" value="MCMFAMILY"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00368">
        <property type="entry name" value="TIGR00368"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="2">
        <location>
            <begin position="208"/>
            <end position="390"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006354"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG89107.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="503" mass="53521" checksum="DDF13C7507A4366F" modified="2017-03-15" version="1">MVAHAYTVAFEGIEARLVEVQCAVSPGLPAFNLVGLPDKAVSEAKERVRAALTAMHIALPPKRITLNLSPADLPKEGSHFDLPIALALLAALNVIPAEDVAATVALGELSLDGSLVSVISALPAAMAAAQEDRSLMCPQGCGAEAAWVDAVNVLAPDSLLQAVQHFTGQSILTSAQPGTVKHTNGHRDMAEVKGQERAKRAIEIAAAGRHHMMMIGTPGSGKSMLAARIPGILPDLTPAEALETSMLHSLSGLLDEGGINRTRPFQDPHHTASMAAIVGGGRGAKPGQISLAHNGVLFMDKLPEFPRTVLDTLRQPIETGEVVVARANAHVRYPCRFMLIAAANPCKCGYFTDPARACARVPMCGDDYLGRISGPLMDRFDLRVDVPPVAFTDLDLPADGESSDQIARRVADARARQSKRYHAIDAIRVNADAEGTILEEHATPDTEGRTLLTQAAERFGLTARGYHRVLRVARTIADLDASETVRKPHIAEAISFRVPSTES</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NPN0</accession>
    <name>A0A1M5NPN0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Putrescine transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1533</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91490.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900207.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1533"/>
    <dbReference type="EnsemblBacteria" id="SHG91490">
        <property type="protein sequence ID" value="SHG91490"/>
        <property type="gene ID" value="SAMN05444003_1533"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="61"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="98"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="137"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="209"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="241"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="62"/>
            <end position="260"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG91490.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="280" mass="30638" checksum="B1D93112032B98A0" modified="2017-03-15" version="1">MTQTRSRFLTVMLTLGLAFFYIPILLLVIYSFNNSKLVPVWGGWSTRWYQELFQSEEVWEAVLLSLQIAVVNATFATLLGTLAGLAMVRFGGFRGRTLFGGMLVAPLVMPEVITGLSLLVFFISLSELIGWPSQRGFTTITIAHITFSMAFVAVTVQARLTGMGQTLEEAAADLGAKPFKVLTAITIPRLTPALISGWLLAFTLSLDDLVIASFVTGPGSTTLPILIFSRIRLGLRPDINAMATIMIIAISICVAIAAILIFRQQQAELRDQQMAFKEEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NPQ6</accession>
    <name>A0A1M5NPQ6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative phosphonate transport system ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1509</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90923.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900183.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1509"/>
    <dbReference type="EnsemblBacteria" id="SHG90923">
        <property type="protein sequence ID" value="SHG90923"/>
        <property type="gene ID" value="SAMN05444003_1509"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012700">
        <property type="entry name" value="CP_lyase_PhnK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037116">
        <property type="entry name" value="CP_lyase_PhnK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02323">
        <property type="entry name" value="CP_lyasePhnK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="5"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="37"/>
            <end position="44"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG90923.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="256" mass="27942" checksum="7F88A9D693B42C01" modified="2017-03-15" version="1">MTPLLSVQGVTKHYGRHIGCADVSFDLYPGEVMGIVGESGSGKSTLLNCMAGHLAPDSGQVVFDTRTDGPRDTVTMSEPERRMLGRTDWAFVHQHARDGLRMGVSAGGNVGERLMAVGERHYGDIRDKATDWLQRVEIDAERVDDRPTTFSGGMQQRLQIARNLVTGPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLSAIIVTHDLAVVRLLADRLMVMKSGRVVEAGLTDQVLDDPQHAYSQLLVSSVLQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NTW9</accession>
    <name>A0A1M5NTW9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Gamma-glutamylcyclotransferase</fullName>
            <ecNumber evidence="1">4.3.2.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1593</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>glutathione = 5-oxo-L-proline + L-cysteinylglycine</text>
            <dbReference type="Rhea" id="RHEA:47724"/>
            <dbReference type="ChEBI" id="CHEBI:57925"/>
            <dbReference type="ChEBI" id="CHEBI:58402"/>
            <dbReference type="ChEBI" id="CHEBI:61694"/>
            <dbReference type="EC" id="4.3.2.7"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the gamma-glutamylcyclotransferase family.</text>
    </comment>
    <dbReference type="EC" id="4.3.2.7" evidence="1"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93006.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900475.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1593"/>
    <dbReference type="EnsemblBacteria" id="SHG93006">
        <property type="protein sequence ID" value="SHG93006"/>
        <property type="gene ID" value="SAMN05444003_1593"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003839">
        <property type="term" value="F:gamma-glutamylcyclotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061928">
        <property type="term" value="F:glutathione specific gamma-glutamylcyclotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006751">
        <property type="term" value="P:glutathione catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06661">
        <property type="entry name" value="GGCT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006840">
        <property type="entry name" value="ChaC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013024">
        <property type="entry name" value="GGCT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036568">
        <property type="entry name" value="GGCT-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12192">
        <property type="entry name" value="PTHR12192"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04752">
        <property type="entry name" value="ChaC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110857">
        <property type="entry name" value="SSF110857"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG93006.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="177" mass="20276" checksum="31AD7C1937B092AA" modified="2017-03-15" version="1">MALWVFGYGSLLWDPGFEPVETRKAVLKDYHRSFCMLSIHYRGTEEKPGLVLALDQADGGQCTGVAFRAADEDADAVLAMLRERELISYAYYEDVVTVTDEGGHDIECVTYIINRDNEQYCHHDLETQAQLITRSTGTRGPNRDYLYNTKARLDALNIRDEDMTWLTNRVRELSQND</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NW87</accession>
    <name>A0A1M5NW87_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gamma-glutamyl cyclotransferase, AIG2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1624</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93738.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900287.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1624"/>
    <dbReference type="EnsemblBacteria" id="SHG93738">
        <property type="protein sequence ID" value="SHG93738"/>
        <property type="gene ID" value="SAMN05444003_1624"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06661">
        <property type="entry name" value="GGCT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013024">
        <property type="entry name" value="GGCT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036568">
        <property type="entry name" value="GGCT-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110857">
        <property type="entry name" value="SSF110857"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG93738.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="185" mass="20871" checksum="1ACFA0EE2D67969F" modified="2017-03-15" version="1">MTDPQFFGYGSLVNLQTHDYANPRPATLKGWKRVWQQSKERNVAFLSVLPSADTEIEGLLACVPNGDWAALDLREHQYDRIDVTNAMGQSAPTAVYQGQPAKIADGALTRPFLLSYLDVIIDGFLEHFGEDGVQRFFKTTDRWDTPALNDRQNPIYPRYVQVSPDALDLVDHHLSKLPTVVKQPM</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PIH9</accession>
    <name>A0A1M5PIH9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">T5orf172 domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1659</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH01552.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900483.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH01552">
        <property type="protein sequence ID" value="SHH01552"/>
        <property type="gene ID" value="SAMN05444003_1659"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018306">
        <property type="entry name" value="Phage_T5_Orf172_DNA-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10544">
        <property type="entry name" value="T5orf172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00974">
        <property type="entry name" value="T5orf172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="T5orf172" evidence="1">
        <location>
            <begin position="12"/>
            <end position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH01552.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="205" mass="23198" checksum="FB307119E040534F" modified="2017-03-15" version="1">MNEGVVYVLINDAFDGFVKIGKTINLEQRLRQLDNTSVPLPFRCVYAVSVPDMDTIERLAHGAFADHRTRSNREFFEVDPSRVIAALQMTGGVEVTPKDDIAADEEGLASLKKQKRQRAFTLYQAGLKDGDELSYLKDESIKAVVIGSKKVIFEGQEESLSSSALKLLHRDGYNWQQANGWSYWTYEDETMAERLKRILETDDEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PNB7</accession>
    <name>A0A1M5PNB7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Carbohydrate ABC transporter ATP-binding protein, CUT1 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1745</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03240.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900554.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH03240">
        <property type="protein sequence ID" value="SHH03240"/>
        <property type="gene ID" value="SAMN05444003_1745"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008643">
        <property type="term" value="P:carbohydrate transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03301">
        <property type="entry name" value="ABC_MalK_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015855">
        <property type="entry name" value="ABC_transpr_MalK-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040582">
        <property type="entry name" value="OB_MalK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17912">
        <property type="entry name" value="OB_MalK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="6">
        <location>
            <begin position="4"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="36"/>
            <end position="43"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH03240.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="353" mass="38592" checksum="5B2A633F8144F4F6" modified="2017-03-15" version="1">MPGVSMNKVIKKYGDVQVIHGIDLEIDDGEFCVFVGPSGCGKSTLLRMVAGLEETTEGQMHIGERNVTKLDPSDRGVAMVFQTYALYPHMTVKENMGFGLKMNGHPKPEIEEKVAEASRILKLDEYLSRKPAALSGGQRQRVSIGRAIVRGPDVFLFDEPLSNLDAELRVEMRVEIARLHKEIGATMIYVTHDQVEAMTLADKIVVLRLGNIEQVGAPMDLYRDPDNKFVAGFIGSPAMNFMDGKVVDGGVEIPNIGMTVPAPIATAYKGHDVIAGLRPEHLSIDPKGDALTVDLTESLGGVSYAYLSGATGEKLVVEERGDDRVSEGDKVGLSFEPERMYLFDAKTEQRIRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PNF2</accession>
    <name>A0A1M5PNF2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Carbohydrate ABC transporter substrate-binding protein, CUT1 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1747</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial solute-binding protein 1 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900870.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1747"/>
    <dbReference type="EnsemblBacteria" id="SHH03277">
        <property type="protein sequence ID" value="SHH03277"/>
        <property type="gene ID" value="SAMN05444003_1747"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006059">
        <property type="entry name" value="SBP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01547">
        <property type="entry name" value="SBP_bac_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0574">Periplasm</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012725591" evidence="4">
        <location>
            <begin position="24"/>
            <end position="419"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH03277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="419" mass="46534" checksum="4707EB7294061D2B" modified="2017-03-15" version="1">MHSITKTSLAALVAAGVATTATADGHALSGTLRISSDMSNPAPRAVMEKMAADFDALHPDLTVELTIVDREAWKTQIRNALSANPPDVVNWYAATRMTPYVDAGLFMDISDLWEEPEMAALASTKGAMTLDGKQWGVPYTYYQWGVYYRKDIFDELGLSEPATWDEEKANCQAIIDSGRKCYTIGSKFLWTAGGWFDYINSRTNGYDFHIELATGQVPWTDDRVRATFANWRELIDMGAFIDDHQSYSWQEAMPFMIDGEATAYLMGNFSVAAFRDGGLTDDQLDFYQFPVINPDVDYAEDAPTDTFHIASGAQNVDAAKAFLLYVTSPEVQTEINGGDALGQLPVNANASIADDKFIQQGFDMLSNNAGGGIMQFFDRDFDAEMASVGMEGLQEFMVFPDNLDDILDRLEETRQRIYN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PNI0</accession>
    <name>A0A1M5PNI0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Alpha-galactosidase</fullName>
            <ecNumber evidence="2">3.2.1.22</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_1750</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Hydrolysis of terminal, non-reducing alpha-D-galactose residues in alpha-D-galactosides, including galactose oligosaccharides, galactomannans and galactolipids.</text>
            <dbReference type="EC" id="3.2.1.22"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="3.2.1.22" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03365.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1750"/>
    <dbReference type="EnsemblBacteria" id="SHH03365">
        <property type="protein sequence ID" value="SHH03365"/>
        <property type="gene ID" value="SAMN05444003_1750"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052692">
        <property type="term" value="F:raffinose alpha-galactosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016052">
        <property type="term" value="P:carbohydrate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd14791">
        <property type="entry name" value="GH36"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.98.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038417">
        <property type="entry name" value="Alpga-gal_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002252">
        <property type="entry name" value="Glyco_hydro_36"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031705">
        <property type="entry name" value="Glyco_hydro_36_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031704">
        <property type="entry name" value="Glyco_hydro_36_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013780">
        <property type="entry name" value="Glyco_hydro_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16874">
        <property type="entry name" value="Glyco_hydro_36C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16875">
        <property type="entry name" value="Glyco_hydro_36N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00743">
        <property type="entry name" value="GLHYDRLASE36"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_hydro_36N" evidence="7">
        <location>
            <begin position="50"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_hydro_36C" evidence="6">
        <location>
            <begin position="630"/>
            <end position="707"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001255"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF16874"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF16875"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH03365.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="720" mass="81322" checksum="D2D1671010627FDD" modified="2017-03-15" version="1">MADLMAQTPSVSETSIDGVGLDRTPQRLSSAWRLDDGRQTLVLTTRNDRLPQVVYWGARLPDDEDLETIHAAHVIDVTGGMLDENPDLSLCPEATRSFPGQPGLIVRDADGTPLLPKFCLRSADQNGTLQLVYEDTKNDLTLTFDFAADVETNVVTCQTTLDATRPVHLHWLAAPVLPAPQQSEEMIDVSGRWCGEFQLGRTQWSAGMRYRENRTGRTGHEHFPSLLIPTIGTTNTQGECYGFHYGWSGGHKMIAEELQDGRRQIQWGHAARMETEPKTQFKTAPLYITYSDTGLNGCAVSFQRHLRERIVTWPKPNTPRPVHYNCWEAIYFDHKLPVLKDIADRAAALGAERFVLDDGWFGERDDDTRSLSDWTVDPRKYPDGLSPLIDHIHGLDMTFGIWFEPEMINEDSDIHRANPHWVLGSEDQTLGRQQKALNMALPEVRDYLYDRMSAILRDHDIDYIKWDHNRVLPMPDAAQTRGSYALIERLRSDFPGVEIESCASGGGRIDFGILERTQRVWLSDSNDALERLRIQHDAALFLPLAVTGSHVGPRVCHTSGRTLDISFRAWVAAQRHMGFEMDPRELTDHEARVLTEVTSWWKANRDWMTTADILRLDSADPAVLAEQQHARDGSQFVVFAGKAATSAQIAPRPLRLTALEPDAMYSIRLINRDTASRLSRGTTALKTDDLTLSGAYLMRHGVTLPWTFPERMWVLEGRKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PPV8</accession>
    <name>A0A1M5PPV8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">7-alpha-hydroxysteroid dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1768</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03700.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900573.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1768"/>
    <dbReference type="EnsemblBacteria" id="SHH03700">
        <property type="protein sequence ID" value="SHH03700"/>
        <property type="gene ID" value="SAMN05444003_1768"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH03700.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="270" mass="28666" checksum="72A364D7AA661BAB" modified="2017-03-15" version="1">MSFSVAGKTAIVTGAANGVGLAIGRHFAQGGANVVFADMDEDKLQHEVGDEAEDEQNVRLFAGDLRKKLTIKNLISATVDSFDRVDILVNACRQVMETDPLDPDDTSLDELLQQNLVTAMRLSQATARRMIKQAEDETPNGPIGSIVNISSIAARRAHPDLLAYSVSNAALDQMTRSLAVALALKRIRVNAVAFGSVMSASLQGQLVSDEEDQLRDTIIDNTPLHRIAGAGEVSDAVQYLASDAASFVTGQIVTVDGGRTLIDPASVAAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PSU1</accession>
    <name>A0A1M5PSU1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycine oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1830</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04924.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900624.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1830"/>
    <dbReference type="EnsemblBacteria" id="SHH04924">
        <property type="protein sequence ID" value="SHH04924"/>
        <property type="gene ID" value="SAMN05444003_1830"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAO" evidence="1">
        <location>
            <begin position="5"/>
            <end position="327"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH04924.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="345" mass="36426" checksum="A2A4DBA04F596177" modified="2017-03-15" version="1">MATVDVTVKGAGVFGLSVAYACAKRGARVRVIDPNGVAAGASGGLVGALAPHVPENWNAKKQFQFESLMMSEAFWAEVEDRSGLSTGYVRSGRLQPLADDHAVELARAREETSQELWQGQAVWEVVHASGAAWEPPSGTGFLVRDTLSALIHPRSATRALADALRGLGGEIASDGSDEGAVVWATGWQGLVEMSDKAPRQIGNGVKGQAALVRYDAAGAPQLFADALHIIPHLDGSVAVGSTSEREFNEPDATDAALDDVLDQARAAMPVLADSEVLERWAGVRPRSRSRAPMLGRHPQIDGAYVANGGFKIGFGMAPKVGEAMVDLVLEGRVTYPDDFDVSCNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PU22</accession>
    <name>A0A1M5PU22_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1857</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05477.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH05477">
        <property type="protein sequence ID" value="SHH05477"/>
        <property type="gene ID" value="SAMN05444003_1857"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013223154" evidence="1">
        <location>
            <begin position="21"/>
            <end position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH05477.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="57" mass="5497" checksum="8550B75025F63A66" modified="2017-03-15" version="1">MKSFMALGLIATLASCGAQSDPIRPTADVGVSIGTNGVSTSANVGATNGPVTVSVGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PU41</accession>
    <name>A0A1M5PU41_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">Argininosuccinate lyase</fullName>
            <shortName evidence="5">ASAL</shortName>
            <ecNumber evidence="3 5">4.3.2.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Arginosuccinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">argH</name>
        <name evidence="8" type="ORF">SAMN05444003_1858</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>2-(N(omega)-L-arginino)succinate = fumarate + L-arginine</text>
            <dbReference type="Rhea" id="RHEA:24020"/>
            <dbReference type="ChEBI" id="CHEBI:29806"/>
            <dbReference type="ChEBI" id="CHEBI:32682"/>
            <dbReference type="ChEBI" id="CHEBI:57472"/>
            <dbReference type="EC" id="4.3.2.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 5">Amino-acid biosynthesis; L-arginine biosynthesis; L-arginine from L-ornithine and carbamoyl phosphate: step 3/3.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the lyase 1 family. Argininosuccinate lyase subfamily.</text>
    </comment>
    <dbReference type="EC" id="4.3.2.1" evidence="3 5"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05497.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900649.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1858"/>
    <dbReference type="EnsemblBacteria" id="SHH05497">
        <property type="protein sequence ID" value="SHH05497"/>
        <property type="gene ID" value="SAMN05444003_1858"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00114"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004056">
        <property type="term" value="F:argininosuccinate lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042450">
        <property type="term" value="P:arginine biosynthetic process via ornithine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01359">
        <property type="entry name" value="Argininosuccinate_lyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.275.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00006">
        <property type="entry name" value="Arg_succ_lyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029419">
        <property type="entry name" value="Arg_succ_lyase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009049">
        <property type="entry name" value="Argininosuccinate_lyase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024083">
        <property type="entry name" value="Fumarase/histidase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020557">
        <property type="entry name" value="Fumarate_lyase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000362">
        <property type="entry name" value="Fumarate_lyase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022761">
        <property type="entry name" value="Fumarate_lyase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008948">
        <property type="entry name" value="L-Aspartase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43814">
        <property type="entry name" value="PTHR43814"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14698">
        <property type="entry name" value="ASL_C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00206">
        <property type="entry name" value="Lyase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00149">
        <property type="entry name" value="FUMRATELYASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48557">
        <property type="entry name" value="SSF48557"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00838">
        <property type="entry name" value="argH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00163">
        <property type="entry name" value="FUMARATE_LYASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="4 5" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 8" id="KW-0456">Lyase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lyase_1" evidence="6">
        <location>
            <begin position="11"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="domain" description="ASL_C2" evidence="7">
        <location>
            <begin position="368"/>
            <end position="437"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000985"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012338"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF14698"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH05497.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="462" mass="50004" checksum="A626FEAC8883FDA9" modified="2017-03-15" version="1">MTKTANTMWGGRFAAGPDAIMEAINASIGFDQRLAAQDIAGSRAHAAMLAAQGIITDKDAEAIREGLLTVLSEIETGEFPFSTALEDIHMNVEARLKEIVGEPAGRLHTARSRNDQVAVDFRLWVRDQCDAVDTALKALIEALIGQAEQGADWVMPGFTHLQTAQPVTWGHHMMAYVEMFARDRSRFADARRRMNLSPLGAAALAGTSFLIDRHATAEALGFDGPMPNSLDAVSDRDFALEFLAASSICAMHMSRLAEELVIWSSAQFRFVKMSDRWSTGSSIMPQKRNPDAAELIRAKIGRIFGANVALMTVMKGLPLTYSKDMQEDKEQVFDAADNLMLAFAALTGMVGDMSAQPENLKIAAASGFSTATDLADWLVRELGLPFRDAHHVTGSLVALAEGKGVDLPDLSLDDIQSVHAEITEAVFEVLGVENSVASRTSFGGTAPSEVRKQIAAWKEHLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PVG4</accession>
    <name>A0A1M5PVG4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1885</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06027.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1885"/>
    <dbReference type="EnsemblBacteria" id="SHH06027">
        <property type="protein sequence ID" value="SHH06027"/>
        <property type="gene ID" value="SAMN05444003_1885"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046171">
        <property type="entry name" value="DUF6173"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19670">
        <property type="entry name" value="DUF6173"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH06027.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="162" mass="17891" checksum="46F57595BFE063E2" modified="2017-03-15" version="1">MTNDDNPMNQIDTSAEQTENAVIPTIQEVLSEHAEGRAVQGELPAALRESPKQKSPAQWAYERIILYIQNFEKQLDNNQEVGMGFTGGDAGVIKIEGLGFFDPDLITFYGRDGTGAKTQLVQHVSQLNVMLRASPKELDQAEPNRIGFKLAEALEREDDATS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q364</accession>
    <name>A0A1M5Q364_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">N-formylglutamate amidohydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2007</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08320.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900769.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2007"/>
    <dbReference type="EnsemblBacteria" id="SHH08320">
        <property type="protein sequence ID" value="SHH08320"/>
        <property type="gene ID" value="SAMN05444003_2007"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007709">
        <property type="entry name" value="N-FG_amidohydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05013">
        <property type="entry name" value="FGase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH08320.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="287" mass="31931" checksum="D3C787F7B01D469A" modified="2017-03-15" version="1">MSAATYNLRRPEERTTSVVFASPHSGRDYPVSFLRKSVLDEQQIRSSEDVFVDQLFRSAPEFGAPLLTALAPRSYVDLNRAPEELDQALIEGVRRISHNPRVASGLGVIPRVVANGRAIYRGKMTLDEAHHRISHYWRPYHDMLQTLLDESQNKFGEAILIDCHSMPHEALENVGPPGAPRPDIVLGDRFGATAASSVMERVEAAMTNAGLRVARNMPFAGAFIAQHYGRPSRGQHAIQIEIDRGLYLNETTLEPNENYENLRRLLMGVIAEIAAIGRPTEDQLAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q3D6</accession>
    <name>A0A1M5Q3D6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycine/D-amino acid oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2031</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08777.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900789.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2031"/>
    <dbReference type="EnsemblBacteria" id="SHH08777">
        <property type="protein sequence ID" value="SHH08777"/>
        <property type="gene ID" value="SAMN05444003_2031"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAO" evidence="1">
        <location>
            <begin position="10"/>
            <end position="368"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH08777.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="399" mass="44491" checksum="26D3FB003276A318" modified="2017-03-15" version="1">MQAPSKTSYDVVIVGGAMYGSSIAWWLTEQAGFDGSVLVVERDPTYEFCSTSHTNSCIRQQFSAPINIQISQFGAEFIKNFRSFMGGDERVPDITLQSFGYLYLADNEGFAATLKDAQQVQSKLGSGTMHLTRDEIQERYPFYNLEDILAGNHNLVDEGYFDGNTIFDWWKRSARERGVEYAHNEVVSMTQAPSGLVTSVTLATGEEISCGTVVNCSGPRAVETSRMAGIEVPIEPRKRYTFIFRSEEPLGHVLPLTINPSGVHMRSDGPYFMAGCPPEDDHAVAYDDFEMDHAIWEDHIWPAVAYRVPHFERAKVINSWAGHYAYNTLDQNAIVGPHPEVTNFIFANGFSGHGFQQSPAIGRGVAEWIASGAYQSIDMSPFGYDRVIENRKFVEKAVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q4G6</accession>
    <name>A0A1M5Q4G6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Predicted N-acetyltransferase YhbS</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2038</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08892.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900796.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2038"/>
    <dbReference type="EnsemblBacteria" id="SHH08892">
        <property type="protein sequence ID" value="SHH08892"/>
        <property type="gene ID" value="SAMN05444003_2038"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="6"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH08892.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="175" mass="19442" checksum="CA5AA87F273CD265" modified="2017-03-15" version="1">MQVERIHELDLTSEDEAQIADLMARCFETDFGGRSFFQQRHHLRLALRDEGKIVAHMALDFRVIRLGEDLCDAVGLAEVATDPTYRGKGLATVLMNAAVEEAKASLADFFVLFGDRPIYAGHGFRTVPNHAIYTTMEGARSGKVVQRPTGALMVLPLRGKPWNDSVVVDLMGHKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q8K0</accession>
    <name>A0A1M5Q8K0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2108</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH10260.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900858.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH10260">
        <property type="protein sequence ID" value="SHH10260"/>
        <property type="gene ID" value="SAMN05444003_2108"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH10260.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="385" mass="43440" checksum="BECEF2E3398E2C54" modified="2017-03-15" version="1">MFKKAEKLRRVARFQKPSLRLGADIRRTKEKISIFLDGTEIFVQNIDHTAGFPQRNDFAVFALCALSMSHNWEIDVNFPVSESAIEQCRKIKNAYRLWSIDVLAPLRLNFMTTQALDAPKLALGIICVSGGLDSLAAAVEAVEDGKTESALLIAGADYSNSEMPGFQQLTERVAEICRKLELELIVAETNLRQVGFHWGMLHTFNLAYCLHYQSSTFGYGAFAQDNNAIQDLMRMPWGNLNVLPDLFSTESFPIKTYGKDMNRVQKLAKVLEFDESLLATLSVCFKDKKIGGNCGKCAKCLEMRITLEVLGHKANDLFEETPDMVAAVKKFRVPIQLSAVKGRMCRTSELVDALPKSELRDALIDFEARLRRRYHWLMPVSTKSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QII6</accession>
    <name>A0A1M5QII6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Relaxase/Mobilisation nuclease domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2133</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH13738.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900938.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2133"/>
    <dbReference type="EnsemblBacteria" id="SHH13738">
        <property type="protein sequence ID" value="SHH13738"/>
        <property type="gene ID" value="SAMN05444003_2133"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005094">
        <property type="entry name" value="Endonuclease_MobA/VirD2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03432">
        <property type="entry name" value="Relaxase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="254"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="308"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="313"/>
            <end position="328"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH13738.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="518" mass="57517" checksum="0CD76A535A98C02A" modified="2017-03-15" version="1">MIISFFSTGTGGGTAPVDYLTAREVLAYDENRNLIRDDTGQPQTKIRDPLPEVLHGNPDQTRDLIDASPNKWSYTAGVISFADSDDPSPDAQQEAIELFEALAFAGLDRDQYDCLWVRHSHEGNVELHFCTPRLELSTGKALNIAPPGHETAFSSLRDLLNKTHGWADPLDPERAREVRATIEAPTRAQGREELHEWILDQISVGTINDRASMIGALTDAGFEIPRASKNYVTAQDPDTGERWRLKGEIFHDDWQAEPSSREIERGPGDDQARPRRLDGISTGELQERFQQHCDQRAAYNRDRYQVLSQRQQERVGEAERDDPPLVDDLAMGDRGDGLSLDRNSADGELVLDGFDHALGIEGVGSDADRTGWTDVGYVGAEPDGVEDLHDGANTNHLHRDQGALDDAAPNSLGTRLARLRRAVGDGLRGLSKGIERVRGALDDQNAEPDGWIGRLRVSAHSIANSVRSCVARLVERGFELREAAHATRDQLEISESRRREIEIELEERDVETDRGLTH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QJS1</accession>
    <name>A0A1M5QJS1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Core-2/I-Branching enzyme</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_2158</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14238.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901469.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2158"/>
    <dbReference type="EnsemblBacteria" id="SHH14238">
        <property type="protein sequence ID" value="SHH14238"/>
        <property type="gene ID" value="SAMN05444003_2158"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045971">
        <property type="entry name" value="DUF5927"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003406">
        <property type="entry name" value="Glyco_trans_14"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02485">
        <property type="entry name" value="Branch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19349">
        <property type="entry name" value="DUF5927"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DUF5927" evidence="7">
        <location>
            <begin position="266"/>
            <end position="565"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="544"/>
            <end position="565"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="549"/>
            <end position="565"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF19349"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH14238.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="565" mass="65527" checksum="A5660A2990AEC2D7" modified="2017-03-15" version="1">MTVGVVMLVHTALDRAEQVVRHWVKGGCPVVIHVDKKVPVADYDRFVADLSDVKTVKFSKRHKCEWGKWGIVAGTQSACEMMLRDFPDVTHVYLASGSCLPLRPIQELKKYLADRPRTDFIESATTADVPWTIGGLDSERFTLRFPFSWKTQRKLFDGYVSMQRAVGFKRRIPEGLVPHMGSQWWCLSRYTLSAILQDPDRPAYDKYFKRVWIPDESYFQTLARLYSGKIESRSLTLSKFDYQGKPHIFYDDHLQLLRRSDCFVARKIWPKATRLYKTFLDGDGSILSGTEPNPGKIDRIFAKAVDRRMRGRQGLYMQSRFPYNEWEGGVTSQPYSVFQGFTELFENFEPWLAKQTGTRVHGHLFGPKRVEFDGRQTHFSGALADAPELRDHNPQMFLANLLWNTQGERQCFQFGPFDNQEINWKIALDPNAQISVISGCWAVPLFQTNRNFADLRNEAARLQQIENDHLSILRSPYTKARVRIWSMAEFIETPMEALQIVVDEMTGKTQRRLTEAPRMYDLTGFGQFLQNLKNQGMHPYLMGDFPLDQAPEHRPEKRRKPYLVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QLQ3</accession>
    <name>A0A1M5QLQ3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 8">Ferrochelatase</fullName>
            <ecNumber evidence="7 8">4.99.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Heme synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Protoheme ferro-lyase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">hemH</name>
        <name evidence="9" type="ORF">SAMN05444003_2197</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7 8">Catalyzes the ferrous insertion into protoporphyrin IX.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7 8">
            <text>2 H(+) + heme b = Fe(2+) + protoporphyrin IX</text>
            <dbReference type="Rhea" id="RHEA:22584"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
            <dbReference type="ChEBI" id="CHEBI:57306"/>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
            <dbReference type="EC" id="4.99.1.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>Fe-coproporphyrin III + 2 H(+) = coproporphyrin III + Fe(2+)</text>
            <dbReference type="Rhea" id="RHEA:49572"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
            <dbReference type="ChEBI" id="CHEBI:68438"/>
            <dbReference type="ChEBI" id="CHEBI:131725"/>
            <dbReference type="EC" id="4.99.1.9"/>
        </reaction>
        <physiologicalReaction direction="right-to-left" evidence="6">
            <dbReference type="Rhea" id="RHEA:49574"/>
        </physiologicalReaction>
    </comment>
    <comment type="pathway">
        <text evidence="7 8">Porphyrin-containing compound metabolism; protoheme biosynthesis; protoheme from protoporphyrin-IX: step 1/1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7 8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 8">Belongs to the ferrochelatase family.</text>
    </comment>
    <dbReference type="EC" id="4.99.1.1" evidence="7 8"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15047.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2197"/>
    <dbReference type="EnsemblBacteria" id="SHH15047">
        <property type="protein sequence ID" value="SHH15047"/>
        <property type="gene ID" value="SAMN05444003_2197"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00252">
        <property type="reaction ID" value="UER00325"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004325">
        <property type="term" value="F:ferrochelatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006783">
        <property type="term" value="P:heme biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00419">
        <property type="entry name" value="Ferrochelatase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03411">
        <property type="entry name" value="Ferrochelatase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00323">
        <property type="entry name" value="Ferrochelatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001015">
        <property type="entry name" value="Ferrochelatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019772">
        <property type="entry name" value="Ferrochelatase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033644">
        <property type="entry name" value="Ferrochelatase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033659">
        <property type="entry name" value="Ferrochelatase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11108">
        <property type="entry name" value="PTHR11108"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00762">
        <property type="entry name" value="Ferrochelatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00109">
        <property type="entry name" value="hemH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00534">
        <property type="entry name" value="FERROCHELATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 7 8" id="KW-0350">Heme biosynthesis</keyword>
    <keyword evidence="2 7 8" id="KW-0408">Iron</keyword>
    <keyword evidence="4 7 8" id="KW-0456">Lyase</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 7 8" id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="7">
        <location>
            <position position="225"/>
        </location>
        <ligand>
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="307"/>
        </location>
        <ligand>
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007718"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00024536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000607"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH15047.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="358" mass="40552" checksum="C37C9240C756674B" modified="2017-03-15" version="1">MFDSQNSDATGTCPVHAPADHPKVKPAKVGILIANLGTPDATDYWSMRRYLNEFLSDKRVVDYSAWLWQPLLQLIILSKRPFSSGAAYRSIWNNEADESPLLTITKAQTAAIKDVMQQRHGDQVRVDFCMRYGNPSTKSKVREMVEAGCTKILFFPLYPHYAGATSATANDQFFRALMEEKWQPIARVVEPYFEEPAYIDALAKSIETAYANAETKPEKLVCSYHGVPERYLREGDPYHCQCQKTTRLLKERLGWSDTDIMTTFQSRFGPEEWLKPYTVNEVARLAEEDGVKNIAVCAPAFSADCIETLEEINEEIKESFEEAGGEHFTYIPCLNDDDAHIQALAGVIDRNLLGWIDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QNF3</accession>
    <name>A0A1M5QNF3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">L,D-transpeptidase catalytic domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2200</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the YkuD family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15113.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901039.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2200"/>
    <dbReference type="EnsemblBacteria" id="SHH15113">
        <property type="protein sequence ID" value="SHH15113"/>
        <property type="gene ID" value="SAMN05444003_2200"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071972">
        <property type="term" value="F:peptidoglycan L,D-transpeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd16913">
        <property type="entry name" value="YkuD_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005490">
        <property type="entry name" value="LD_TPept_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038063">
        <property type="entry name" value="Transpep_catalytic_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03734">
        <property type="entry name" value="YkuD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141523">
        <property type="entry name" value="SSF141523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="YkuD" evidence="4">
        <location>
            <begin position="39"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF03734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH15113.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="163" mass="18173" checksum="C515159411AA74A4" modified="2017-03-15" version="1">MITRRMFLASSATFAVSACSSKFKTYTGPVVTRVQVFKGQRAMQLLHHNTQLAAYKFELGFAPEGHKAFYGDGRTPEGAYRINRQNPNSRYHLSLGISYPNADDIAYARSLGREPGGDIFIHGTPRLFAGQTDWTYGCIAVSDDEMEDIYAMVRVGTPIFIYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QQG1</accession>
    <name>A0A1M5QQG1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Predicted arabinose efflux permease, MFS family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2236</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15823.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901103.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2236"/>
    <dbReference type="EnsemblBacteria" id="SHH15823">
        <property type="protein sequence ID" value="SHH15823"/>
        <property type="gene ID" value="SAMN05444003_2236"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="15"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="56"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="83"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="108"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="142"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="170"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="225"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="265"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="289"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="314"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="349"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="384"/>
            <end position="403"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="17"/>
            <end position="411"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH15823.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="412" mass="44615" checksum="181DBD3CB4B7DEB5" modified="2017-03-15" version="1">MSTPSGYLQFIKENLSFLAAGFLLSFISGLGQTYFISIFGAEIRDEFGLTNGDWGLIYMVSTGLSAIVMVYAGTLADTYRIRSLSILVMGLLVIGCLSLATATTLPMLAGIIFLLRFAGQGMAAHMAIVAMSRWFTATRGRAIAIASLGFMFGEATMPITLVWLKSFVDWRTLWISFAWFTVFLIPIVWWLLSKERTPSAVANETEAFGLEGHHWTRKDAISDKLFWLMVPGVALFPAFGTAFWFHQAHFAEIKGWTHLELVSVFPLGTIALAISTVFYGWLIDRVGAIRLLPFFLAPLVIAFTFHWAAASVAITAIAVILMGIAGGGQATVLAACWSEFYGTRYIGSIKAAAAAVMVAGSAVGPGLTGFLIDAGISFETQQLGVALLFLITCFIMILPRNLALASAAKVHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QUP2</accession>
    <name>A0A1M5QUP2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative hydroxymethylpyrimidine transport system substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2334</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17877.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901253.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2334"/>
    <dbReference type="EnsemblBacteria" id="SHH17877">
        <property type="protein sequence ID" value="SHH17877"/>
        <property type="gene ID" value="SAMN05444003_2334"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009228">
        <property type="term" value="P:thiamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027939">
        <property type="entry name" value="NMT1/THI5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015168">
        <property type="entry name" value="SsuA/THI5"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31528">
        <property type="entry name" value="PTHR31528"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09084">
        <property type="entry name" value="NMT1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012816069" evidence="1">
        <location>
            <begin position="20"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="domain" description="NMT1" evidence="2">
        <location>
            <begin position="32"/>
            <end position="243"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09084"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH17877.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="312" mass="33861" checksum="42FE2FD2C1BECAE0" modified="2017-03-15" version="1">MKLTTFTAAAALLAAPAMAQDKMTLLLDWFVNPDHGPIIIAEELGYFADQGLEVEVIAPADPSDPPKLVAAGQAELAISYQPQLHLQIHEGLPLQRVGTLVATPLNCLLALEDGPIETPADLKGKKVGFSVGGVEEAVLGAVLNTYDLTLDDIELVNVNFSLSPSLMTGQVDAVIGAFRNFELNQMDIEGVAGRCFYVEEEGLPPYDELIYVANTETMDKEMIARFLAATELATQYIVNHPQESWEIFAGTSAELQDELNARAWVDTLPRFALRPTAMDEGRYEAFEAFLNEAGLIPAINPVSKITIDVTAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QW38</accession>
    <name>A0A1M5QW38_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2354</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18302.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901289.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2354"/>
    <dbReference type="EnsemblBacteria" id="SHH18302">
        <property type="protein sequence ID" value="SHH18302"/>
        <property type="gene ID" value="SAMN05444003_2354"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH18302.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="369" mass="41508" checksum="0B899A5803C06E16" modified="2017-03-15" version="1">MDPIKISEGRFHFSEETQTYKVSWDIDGEDLWFESQHPIVPRAEAALCAMAIPSKFLGRQIVLEDEVDATFVENQSKASDVIHRYWGYQAPEPQVARTVHRKHATGSAMFFTAGVDSLDTLKRNLGTCDVLVNVLGFDIALRDPDRNKKSFGNIEKVAKEVDAAAISVATNLRSHHLFKLLPWRETHGAALACVGHVLSDQIGEIRVAAADVEPPWGQSSELDPLWSSSAIQIKTDGGGVLRLDKVISIAEWSLAKKYMKVCWENRSEALNCGECEKCVRTQVSISIVTDLDQYEVFPSGNLNRRVRRLRKVPPAIVPQWYELAEKTNDPQLRKAINRMLVFCRARNAVVNTAKSMGLKKEHLSWMLRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QW44</accession>
    <name>A0A1M5QW44_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2359</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18397.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901297.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH18397">
        <property type="protein sequence ID" value="SHH18397"/>
        <property type="gene ID" value="SAMN05444003_2359"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="SSF51126"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH18397.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="609" mass="66107" checksum="DDA98ACF86B3C9C5" modified="2017-03-15" version="1">MTAYRFSGFPIGQNVQVTVRQAGQEKFASIPNWKQVSSLPTLGASQWQVAPEDGLRADTAIISLFELPDPQGDMVVDAIVANVDGEESILGYGAQTNDETWRPKRRIRTHTDSIANVRLRVIWRNTTNGETELGAWSDPKQVSPAQITDPSVIIHVPKDRGTAPFGAQFYAEVFGSGELDPFQNCQVSWAYDDATSQHTNLSDSYVVVHGSQQANTSFDPFGAHTLDAPGTYSVTATTTINGENYTATKTILVDDPDVIYHGNRTIFVDPALPAPGTSNVPAGASVVATLVEAQTLNPTARPTRIIIQSGLDIDEPALDRFNHVQTMITAAPGPRPKIRQHIFFRYNPDNTECSLSGVELLGPYNPAHPGSTPRPSSGVVVDGFNTTIHNCIISGWNISIDVAPVRRYVISNTVVTNWADYGLFQQTNCGWHSIVGSRFTQNPLTIRAMGKAEKSAPIYADHDPYRCSIPAEPACILQSELFSANSWAGGIQLICRWNADGIPGQQFQMSQCKTEGGSFYFGSTASPTPASAQQFRVTKTHHVCSINGLIGTNFGGANFKNNIVILGDTLQESSTGVRNALSATETHNGTFDKGIYPNWGQAYAQPIRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QWD9</accession>
    <name>A0A1M5QWD9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2349</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18196.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH18196">
        <property type="protein sequence ID" value="SHH18196"/>
        <property type="gene ID" value="SAMN05444003_2349"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH18196.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="87" mass="9216" checksum="E1917F7E294E136D" modified="2017-03-15" version="1">MPIDRYKTFQNGPDGPAVGASLISPSDTVDLIELTVGLNVSTTGQVRVSMKDGEVVDLTIGSGRFFPVRVSKIWETGTTATGIVALY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QZM1</accession>
    <name>A0A1M5QZM1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator PpsR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2391</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18993.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901347.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2391"/>
    <dbReference type="EnsemblBacteria" id="SHH18993">
        <property type="protein sequence ID" value="SHH18993"/>
        <property type="gene ID" value="SAMN05444003_2391"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002197">
        <property type="entry name" value="HTH_Fis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013767">
        <property type="entry name" value="PAS_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011785">
        <property type="entry name" value="Tscrpt_reg_PpsR-CrtJ"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02954">
        <property type="entry name" value="HTH_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00989">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01590">
        <property type="entry name" value="HTHFIS"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02040">
        <property type="entry name" value="PpsR-CrtJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PAS" evidence="1">
        <location>
            <begin position="156"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH18993.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="470" mass="51569" checksum="2372F02D2EA9A202" modified="2017-03-15" version="1">MTSRGTKYWNSGSIPLIAPEILGDIIAQVSDVGIVIDETGQVVSVLMNEDTTGYEEIVSLEGRDIREFLTVESIAKFDERLQSFIESDGQVRPVELNHGNEKTRHDIPIRYSLHRVGPDGAILMLGRDLRPIAEMQNQLVQSQIALERDIEAHREYDMRFRVLMENSSECFVFITSHNGRIVDINSAAARSLGSEREALINSTLTDHLQIKNSDELIENLASQAVTDSSVPVDIIHGATGQKIHIFASMFRVAGQRTILARLDYVGEESSPTDALSVNLHGLYQASPDAMVFVSDEGKILSANESFLDLLGVAHGASIRGTPIADYLLRGSVDLKVMTENVGRSGKMRMYATKVAGPYGSPRGVEVAVSSIEAGSNQVVYAFVMRDANRVDVSRVQAPVADESLESVVELVGSATLKEIVAETTNVIEKMCIETAVELTMNNRVAAAEMLGLSRQSLYVKLRKFDLLSRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R185</accession>
    <name>A0A1M5R185_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2448</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH20122.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901528.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2448"/>
    <dbReference type="EnsemblBacteria" id="SHH20122">
        <property type="protein sequence ID" value="SHH20122"/>
        <property type="gene ID" value="SAMN05444003_2448"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="9"/>
            <end position="406"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="415"/>
            <end position="490"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH20122.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="503" mass="53396" checksum="75F700C5645A84A8" modified="2017-03-15" version="1">MHTIADLIQQHPDTANAIGAPGREWMTYGDLKSLAQTVRVSLRSAGVGAQDRVAIVLPNGPEMAAAFVTVAQSATTAPLNPAYKEDEFAFYLEDLKARAIILEAGYDGPARAAAERFNLTIIELTATEPAGTFNLSTETKGDAADTAPASDDVALILHTSGTTSRPKIVPLLQSNVAASAENIRASLALTPDDCCLNVMPLFHIHGLVAAVSASLAAGASISCAPGFDALKFFGWLEEIDPSWYTAVPTMHQAILARAPRNAEIIKNARLRFLRSSSSSLPGPVMTQLADTFGAPVVEAYGMTEAAHQMCCNPIEPGRQKPGAVGVPAGPEVRIAHEIENRLVEGIGEVSISGPNVTPGYEGNSEANEKNFFEAEGKRWFRTGDQGAFDEDGYLALTGRLKEIINRGGEKISPLEVDSILSDHAAIAQCVTFAVPHAKLGEEVAAAVVLKEGQEATDRDIRDFASERLAAFKVPRKILILDEIPKGATGKLQRIGLAEKLGLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R1F4</accession>
    <name>A0A1M5R1F4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 8">Diaminopimelate epimerase</fullName>
            <shortName evidence="8">DAP epimerase</shortName>
            <ecNumber evidence="4 8">5.1.1.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">PLP-independent amino acid racemase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">dapF</name>
        <name evidence="10" type="ORF">SAMN05444003_2431</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>(2S,6S)-2,6-diaminoheptanedioate = meso-2,6-diaminoheptanedioate</text>
            <dbReference type="Rhea" id="RHEA:15393"/>
            <dbReference type="ChEBI" id="CHEBI:57609"/>
            <dbReference type="ChEBI" id="CHEBI:57791"/>
            <dbReference type="EC" id="5.1.1.7"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; DL-2,6-diaminopimelate from LL-2,6-diaminopimelate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the diaminopimelate epimerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="5.1.1.7" evidence="4 8"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19799.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901401.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2431"/>
    <dbReference type="EnsemblBacteria" id="SHH19799">
        <property type="protein sequence ID" value="SHH19799"/>
        <property type="gene ID" value="SAMN05444003_2431"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00025"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008837">
        <property type="term" value="F:diaminopimelate epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00197">
        <property type="entry name" value="DAP_epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018510">
        <property type="entry name" value="DAP_epimerase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001653">
        <property type="entry name" value="DAP_epimerase_DapF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31689">
        <property type="entry name" value="PTHR31689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01678">
        <property type="entry name" value="DAP_epimerase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00652">
        <property type="entry name" value="DapF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01326">
        <property type="entry name" value="DAP_EPIMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6 8" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="8">
        <location>
            <begin position="80"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="8">
        <location>
            <begin position="207"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="8">
        <location>
            <begin position="217"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="79"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="8">
        <location>
            <position position="79"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="19"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="52"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="70"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="156"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="189"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Could be important to modulate the pK values of the two catalytic cysteine residues" evidence="8">
        <location>
            <position position="158"/>
        </location>
    </feature>
    <feature type="site" description="Could be important to modulate the pK values of the two catalytic cysteine residues" evidence="8">
        <location>
            <position position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000599"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010219"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00197"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH19799.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="271" mass="29172" checksum="6F3B266027B45A05" modified="2017-03-15" version="1">MTQNPQNIVPFMKMHGLGNDFVVVDERGLTPRIDANLARAIGDRHRGVGFDQLAVLSASDTADVELTFWNSDGSTAAACGNATRCIARHLFEETGKAELSIVTERGVLAAKDLGQGITSVNMGHPQLNWDEVPLAENIDTLELPIDGAPTATGMGNPHCTFFVDDVATVDLEARGAEMEHHPLYPERTNVQFAQIIGPDHIRMRVWERGVGVTLASGSSSCATAVAAARRGLTGHDVRIDLDGGTLEISWKVDGVWMTGPTAHVFDGVWHI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RCC5</accession>
    <name>A0A1M5RCC5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Aldehyde dehydrogenase (NAD+)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2499</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23790.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901584.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2499"/>
    <dbReference type="EnsemblBacteria" id="SHH23790">
        <property type="protein sequence ID" value="SHH23790"/>
        <property type="gene ID" value="SAMN05444003_2499"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="2">
        <location>
            <begin position="17"/>
            <end position="473"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH23790.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="479" mass="51180" checksum="CFCEEBC910DD1C48" modified="2017-03-15" version="1">MIEKRDFYIDGAWAAPVEARDHDVIDPSNEEVCAVISLGDQADTDKAVAAAKAAFPSWAATPPAERAEYVAKILEQYNARAEEMAQAISIEMGAPIDLARNSQAPCLPWHLEGFLGAVDSVEWVRSLGDHAPNDRLVMEPIGVVGLITPWNWPMNQVTLKVIPALLAGCTIVLKPSEEAPLSSLLFAEFVHDAGVPAGVFNLVNGDGVGVGSQLSEHRDVAMISFTGSTRAGKAISKAAAETLKRVTLELGGKGANVIFADADEKAVKRGVLHCMQNTGQSCNAPTRMLVEESVYDETVEKAVAAANAVTVGPTSEEGRHIGPVVNKTQWDKIQDMIQVGIDEGAKLVAGGTGLPEGVNRGYYVRPTVFADVSNDMRIAQEEIFGPVLSIIPFKDEAEAIQIANDTEYGLTNYVQSQDGAKRNRMALALKSGMVEMNGQSRGQGSPFGGMKMSGRAREGGLFGIEEFLEVKAISGWSND</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RD93</accession>
    <name>A0A1M5RD93_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Hemolysin-type calcium-binding repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2516</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24110.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901609.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH24110">
        <property type="protein sequence ID" value="SHH24110"/>
        <property type="gene ID" value="SAMN05444003_2516"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.150.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018511">
        <property type="entry name" value="Hemolysin-typ_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001343">
        <property type="entry name" value="Hemolysn_Ca-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011049">
        <property type="entry name" value="Serralysin-like_metalloprot_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00353">
        <property type="entry name" value="HemolysinCabind"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51120">
        <property type="entry name" value="SSF51120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00330">
        <property type="entry name" value="HEMOLYSIN_CALCIUM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH24110.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="173" mass="17632" checksum="97A15BE489670FD4" modified="2017-03-15" version="1">MLAILALMGFGLSVLVLTGTEDDEFTDEGVSDGENSVGMGLTPVGNVASILDASGEVIDKSAEGRSVIFSGDGDDTVLTGGEADYVDVEEGNDRVESGDGDDEVIGGKGDDMLLGGEGGDSLFGSIGDDVLHGDAGQDQLIGGGGNDQLFGGEGVDSIEGNFWGRHARRWRGC</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RDB4</accession>
    <name>A0A1M5RDB4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2517</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24130.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901610.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2517"/>
    <dbReference type="EnsemblBacteria" id="SHH24130">
        <property type="protein sequence ID" value="SHH24130"/>
        <property type="gene ID" value="SAMN05444003_2517"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012441">
        <property type="entry name" value="DUF1643"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07799">
        <property type="entry name" value="DUF1643"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH24130.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="169" mass="19533" checksum="52D3FED8DCAF21FA" modified="2017-03-15" version="1">MIRRTHESDGTWSEAVYSDCERYRYALTRIWDADARRVMFVMLNPSKANEIANDPTVERCERRARALGYGAFRVTNIFAWRDTDPHAMRKAKTPVGPDNDQTLIDGTAWADDIIAAWGAHGEHRDQGIYVRDLLFRTEAPIFHLGLTKAGHPRHPLYISYAQQPERWHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5REN6</accession>
    <name>A0A1M5REN6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Pyridoxamine 5'-phosphate oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2549</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24817.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901660.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2549"/>
    <dbReference type="EnsemblBacteria" id="SHH24817">
        <property type="protein sequence ID" value="SHH24817"/>
        <property type="gene ID" value="SAMN05444003_2549"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004733">
        <property type="term" value="F:pyridoxamine-phosphate oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008615">
        <property type="term" value="P:pyridoxine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000659">
        <property type="entry name" value="Pyridox_Oxase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024624">
        <property type="entry name" value="Pyridox_Oxase_Alr4036_FMN-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10851">
        <property type="entry name" value="PTHR10851"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12766">
        <property type="entry name" value="Pyridox_oxase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="3" id="KW-0288">FMN</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyridox_oxase_2" evidence="5">
        <location>
            <begin position="23"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF12766"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH24817.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="185" mass="20861" checksum="DAE8B917F05BC095" modified="2017-03-15" version="1">MSDWFETKSGLWDMTWAQLDLGVRDASHPCRLVSFSTVSADGLPESRNVVLRKAAADAKFCEVQTDTQSSKIESLKAHPHAALLWWVESLDLQIRMQCGVEILEGPSVDDDWAIVPPSSRVSYGTLPAPGTPIQGALDYEKPPVRERFCVLRCHLEHLDLIHLGRDHRRVAYTQARDWDGQWLSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RHB4</accession>
    <name>A0A1M5RHB4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">(S)-ureidoglycine aminohydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2592</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25712.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901723.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2592"/>
    <dbReference type="EnsemblBacteria" id="SHH25712">
        <property type="protein sequence ID" value="SHH25712"/>
        <property type="gene ID" value="SAMN05444003_2592"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071522">
        <property type="term" value="F:ureidoglycine aminohydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02212">
        <property type="entry name" value="cupin_UGlyAH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd02211">
        <property type="entry name" value="cupin_UGlyAH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013096">
        <property type="entry name" value="Cupin_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017627">
        <property type="entry name" value="UGHY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044697">
        <property type="entry name" value="UGlyAH_cupin_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044704">
        <property type="entry name" value="UGlyAH_cupin_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07883">
        <property type="entry name" value="Cupin_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03214">
        <property type="entry name" value="ura-cupin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cupin_2" evidence="1">
        <location>
            <begin position="71"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="domain" description="Cupin_2" evidence="1">
        <location>
            <begin position="194"/>
            <end position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH25712.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="274" mass="30660" checksum="E30038B66CED62AA" modified="2017-03-15" version="1">MTRYATPPGGLPPQSKTLDERAVFTESYAFIPADTMRDIVTSFLPHWKNTRAWIIARPMTGFSETFSHYITEVGPGGGSTRPDDNPKAQSVLFVVAGAAEITLMGQAHSLTAGSYVYIPAGADWTFRNISDVPATFHWIRKAYQAADGVALPQPFITHDDNATVIEMPETDGKWSTSRFVEPEDLRHDMHVNIVNFLPDGCIPFMETHVMEHGLYVLEGTAKYRLNQDWVEVGPGDYMWLRAFCPQACVATGDGPFRYLLYKDVNRHMPLDLCP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RJS9</accession>
    <name>A0A1M5RJS9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF1244 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2623</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2623"/>
    <dbReference type="EnsemblBacteria" id="SHH26369">
        <property type="protein sequence ID" value="SHH26369"/>
        <property type="gene ID" value="SAMN05444003_2623"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3340.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023163">
        <property type="entry name" value="SMc04008-like_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036810">
        <property type="entry name" value="SMc04008-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06844">
        <property type="entry name" value="DUF1244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF158757">
        <property type="entry name" value="SSF158757"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1244" evidence="1">
        <location>
            <begin position="31"/>
            <end position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF06844"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH26369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="99" mass="11558" checksum="25F5804D8F1F5CDF" modified="2017-03-15" version="1">MTKIDAQTQIELEAAAFRRLQKHLMEERTDAQNIDMMNLAGFCRNCLSRWYQEAANERGIEMSKDEGREAFYGMPFSEWKEKYQTEASPEAKAAFDKSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RKD7</accession>
    <name>A0A1M5RKD7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Holo-[acyl-carrier-protein] synthase</fullName>
            <shortName evidence="8">Holo-ACP synthase</shortName>
            <ecNumber evidence="8">2.7.8.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">4'-phosphopantetheinyl transferase AcpS</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">acpS</name>
        <name evidence="10" type="ORF">SAMN05444003_2638</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>apo-[ACP] + CoA = adenosine 3',5'-bisphosphate + H(+) + holo-[ACP]</text>
            <dbReference type="Rhea" id="RHEA:12068"/>
            <dbReference type="Rhea" id="RHEA-COMP:9685"/>
            <dbReference type="Rhea" id="RHEA-COMP:9690"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:58343"/>
            <dbReference type="ChEBI" id="CHEBI:64479"/>
            <dbReference type="EC" id="2.7.8.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the P-Pant transferase superfamily. AcpS family.</text>
    </comment>
    <dbReference type="EC" id="2.7.8.7" evidence="8"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26714.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901798.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2638"/>
    <dbReference type="EnsemblBacteria" id="SHH26714">
        <property type="protein sequence ID" value="SHH26714"/>
        <property type="gene ID" value="SAMN05444003_2638"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008897">
        <property type="term" value="F:holo-[acyl-carrier-protein] synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.470.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00101">
        <property type="entry name" value="AcpS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008278">
        <property type="entry name" value="4-PPantetheinyl_Trfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037143">
        <property type="entry name" value="4-PPantetheinyl_Trfase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002582">
        <property type="entry name" value="ACPS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004568">
        <property type="entry name" value="Ppantetheine-prot_Trfase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01648">
        <property type="entry name" value="ACPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56214">
        <property type="entry name" value="SSF56214"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00516">
        <property type="entry name" value="acpS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00556">
        <property type="entry name" value="pantethn_trn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 8" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="4 8" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="1 8" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="6 8" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="5 8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="ACPS" evidence="9">
        <location>
            <begin position="4"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="8"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="57"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00101"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01648"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH26714.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="134" mass="15042" checksum="787572A4D97BF652" modified="2017-03-15" version="1">MILGIGTDLANIERIQGTLDRFGDRFRNRVFTESEQRKAERRKDVAGTYAKRWAAKEACSKALGTGLRMGISWKDMAVSNLRTGQPVMEVTGWAKQRLDEMTPLGHTATIHVTLTDDHPWAQAFVLIEALPTED</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RUZ4</accession>
    <name>A0A1M5RUZ4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">von Willebrand factor type A domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2699</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH29858.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901944.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH29858">
        <property type="protein sequence ID" value="SHH29858"/>
        <property type="gene ID" value="SAMN05444003_2699"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13519">
        <property type="entry name" value="VWA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00327">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50234">
        <property type="entry name" value="VWFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009913563" evidence="1">
        <location>
            <begin position="27"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="domain" description="VWFA" evidence="2">
        <location>
            <begin position="29"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH29858.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="235" mass="25693" checksum="924815F5D8A3EF30" modified="2017-03-15" version="1">MALHKVNTLLGVCFVYFLVCSPKAYADASTVVILDASVSMATELDGGTRLSAAKQAVMNVLNETVQSEPSQPFGFISFYDGCWVDVMVKPRPLESVLDDIRGRVSNLQTREFGHTPIAKSLEIAGKLLEQDGGKIILVSDGQESCQEHRDLCELAEHLDQINIDFEIHLVGFALSPDQEDALRCIPQATGGTFVSVNRADDLISAVGFVATEAGSDVQDRCYDNRGGLLHWWCEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RVR5</accession>
    <name>A0A1M5RVR5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Fructose-bisphosphate aldolase, class II</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2721</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="4">Binds 2 Zn(2+) ions per subunit. One is catalytic and the other provides a structural contribution.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Carbohydrate biosynthesis; Calvin cycle.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30336.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901975.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2721"/>
    <dbReference type="EnsemblBacteria" id="SHH30336">
        <property type="protein sequence ID" value="SHH30336"/>
        <property type="gene ID" value="SAMN05444003_2721"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00116"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016832">
        <property type="term" value="F:aldehyde-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019253">
        <property type="term" value="P:reductive pentose-phosphate cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00947">
        <property type="entry name" value="TBP_aldolase_IIB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000771">
        <property type="entry name" value="FBA_II"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01116">
        <property type="entry name" value="F_bP_aldolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001359">
        <property type="entry name" value="F_bP_aldolase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0113">Calvin cycle</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <feature type="active site" description="Proton donor" evidence="3">
        <location>
            <position position="82"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="83"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="104"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="134"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="174"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="202"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005215"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022567"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR001359-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR001359-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH30336.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="276" mass="29363" checksum="8C1AB61A5B7D7AD8" modified="2017-03-15" version="1">MPLVTLKDVLQPALKNGYAVGGLVTLGWEEMRAYVAAAEAENCPVILQAGPSCREHTPLPILGKMFRQLAEAASVPVVAHLDHGYTLVECKEALESGFTSLMFDGSRKPLSQNIDETAQIAEMAHSAGISCEGEIGFVGYDNGEASAGTDPQEAAKFATESGVDAMAISVGNVHLQQDQSGGLDEERIAAIQAVTEIPLVIHGGSGVPAEQRRRLAQTTNICKFNIGTELRMAFGEALREAVNADPKRFDRVSILKETHDPVVTAARTVLANLKGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RWZ3</accession>
    <name>A0A1M5RWZ3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2739</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30744.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902004.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2739"/>
    <dbReference type="EnsemblBacteria" id="SHH30744">
        <property type="protein sequence ID" value="SHH30744"/>
        <property type="gene ID" value="SAMN05444003_2739"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021836">
        <property type="entry name" value="DUF3429"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15887">
        <property type="entry name" value="PTHR15887"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11911">
        <property type="entry name" value="DUF3429"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="49"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="75"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="99"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="130"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH30744.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="147" mass="15715" checksum="2143C41D7CFD4409" modified="2017-03-15" version="1">MIFGIPRAPLLLGIAGVIPFAWGALTLLFPSLGIWGIENFGSRFVGPYVQLFYGAIILSFMSGVLWGFATKGSGASGYVLSVIPALWAFFMTGGGASAASLNLIVGFLALLLLDWHFWNLGAAPEWWLKLRVLLTSIVIICLLPGAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S3K7</accession>
    <name>A0A1M5S3K7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">AAA domain (Dynein-related subfamily)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2837</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902150.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH33059">
        <property type="protein sequence ID" value="SHH33059"/>
        <property type="gene ID" value="SAMN05444003_2837"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011704">
        <property type="entry name" value="ATPase_dyneun-rel_AAA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07728">
        <property type="entry name" value="AAA_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="1">
        <location>
            <begin position="29"/>
            <end position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH33059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="364" mass="40160" checksum="764FB0FDED12CC92" modified="2017-03-15" version="1">MSVNAQIVSAGDALEVLRAGWSAQNEGKLTSSWMLHGRPGVGKTQVVTDLAREIGAKLYDIRLTTIEPQDLRGLPYYDHDAKKTVWYRPEDLPDDETKPAVLFLDELTAASPNLQPTVYGLLQERRVGQHILPKSVFVVAAGNTVDDGAVAYQMGTALSDRLIHLQVNADAKDWLERYAVDKNLSPLVTAFLRSRPDLLDTTEQAIRRDEVIACTPRSWEKVSDIVYGIPDKRIRHTMVAGTIGTAAAAEFAQVATELDAVVSLEELFETSRSKRYDLYPKSINGLVGLVYALVARVDEETISDAIDIIADLRHVEAPTLPLGEVTNFGFEILIRKSMSEGLAEAFRTSQSYQDYAKERAEAGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S4J1</accession>
    <name>A0A1M5S4J1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2857</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33532.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH33532">
        <property type="protein sequence ID" value="SHH33532"/>
        <property type="gene ID" value="SAMN05444003_2857"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012748129" evidence="1">
        <location>
            <begin position="23"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH33532.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="143" mass="15928" checksum="6703E0F57295D8E9" modified="2017-03-15" version="1">MHLKTLAVSISCLLATATAIHAESCQIDGPDIFDGFTLKDISQLIDLPDPETVRAVQLLERPWVDRIISGELQSFSKSWCDIGIQDMIVELRIPVEDDAIRAIEQRALYVWDSSGEPVGWRIEALGERFQCARGDDPYAALCP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SCQ7</accession>
    <name>A0A1M5SCQ7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NADPH:quinone reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2899</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36259.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2899"/>
    <dbReference type="EnsemblBacteria" id="SHH36259">
        <property type="protein sequence ID" value="SHH36259"/>
        <property type="gene ID" value="SAMN05444003_2899"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002364">
        <property type="entry name" value="Quin_OxRdtase/zeta-crystal_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01162">
        <property type="entry name" value="QOR_ZETA_CRYSTAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PKS_ER" evidence="1">
        <location>
            <begin position="16"/>
            <end position="362"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH36259.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="364" mass="38741" checksum="2A8821BF76855650" modified="2017-03-15" version="1">MTLPDTMRAVVLMGHGDLDQLAYRTDWPRPEPSADQVLIKVEACGMNNTDINTRSGWYSKTVSEATTGGGYEEVDEDDPTWGGAPISLPRIQGADVVGTVVAVGANADASLVGKRVMTDNWLRDWDDPLNKDKTGYFGSEADGGYAEYTVIDHRNVQAVNSDMSSVELATFSCSYTTAEGMLSRANVADGDTVLITGASGGVGSALIQLAKRRGAKVVAMSSESKHAQLAELNPDVLLPRNVDDLAAELKKTTGHDKVTVVADVVGGGAFGSLLDVLERGGRYTCSGAIAGPIVDFDLRTFYLKDITMTGSTVVLPHIFEDLVRYIEAGDLRALVAETVPLADFHAGQVAFVKKSHIGNFVVVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5ST71</accession>
    <name>A0A1M5ST71_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Carbohydrate ABC transporter substrate-binding protein, CUT1 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_3094</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial solute-binding protein 1 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41729.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902642.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3094"/>
    <dbReference type="EnsemblBacteria" id="SHH41729">
        <property type="protein sequence ID" value="SHH41729"/>
        <property type="gene ID" value="SAMN05444003_3094"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006059">
        <property type="entry name" value="SBP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01547">
        <property type="entry name" value="SBP_bac_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0574">Periplasm</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5011957404" evidence="4">
        <location>
            <begin position="26"/>
            <end position="440"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH41729.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="440" mass="48435" checksum="8B5C914D244C9757" modified="2017-03-15" version="1">MKTKMMTTVAAGAILASGLSTAAQAEDLTLCWAAWDPANALIELSKDFEEQSGHNMSFEFVPWTSFADRMLNELNSGGQLCDLMIGDSQWIGGGAENGHYVKLNDFFDANGISMDDFIPATVTGYSEWPKNTPNYYALPAFGDVVGWTYRKDWFDRPELKAEFKETYGRDLGVPASLGELKDIAEFFQGRDIDGTTVYGAAIYTERGSEGITMGVTNALYNYGFLYENPDQPYDLDGFVNSAGAVEGLEFYKELYDVGAPPGSSNWYMGENIDAYRSGQVAMQMNFAFIWPGVEADENVGSGKSGYFPNPAGPTGQFAQLGGQGISVVSYSEKQDAALEYIQWFAQPEVQAKWWELGGYSALKAVVEDPSFATSQPYAQTFLDSMAIVKDFWAEPAYADLLIPMQERIHNYVVAGDGTAQDALDGLVRDWVEVFEDEGKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5STF2</accession>
    <name>A0A1M5STF2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">GST-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_3099</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GST superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41805.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902646.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3099"/>
    <dbReference type="EnsemblBacteria" id="SHH41805">
        <property type="protein sequence ID" value="SHH41805"/>
        <property type="gene ID" value="SAMN05444003_3099"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006749">
        <property type="term" value="P:glutathione metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010987">
        <property type="entry name" value="Glutathione-S-Trfase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036282">
        <property type="entry name" value="Glutathione-S-Trfase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040079">
        <property type="entry name" value="Glutathione_S-Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004045">
        <property type="entry name" value="Glutathione_S-Trfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004046">
        <property type="entry name" value="GST_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00043">
        <property type="entry name" value="GST_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02798">
        <property type="entry name" value="GST_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00019">
        <property type="entry name" value="Glutathione_Transferase_(cytos"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47616">
        <property type="entry name" value="SSF47616"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50405">
        <property type="entry name" value="GST_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50404">
        <property type="entry name" value="GST_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GST N-terminal" evidence="2">
        <location>
            <begin position="3"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="domain" description="GST C-terminal" evidence="3">
        <location>
            <begin position="90"/>
            <end position="215"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU003494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH41805.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="235" mass="26761" checksum="E1C4134AF20FA46D" modified="2017-03-15" version="1">MTTPDILLYTANTMNGWKPLIFLHEAEIDYELVPISFSKKEQKAPDYMKLNPNGRIPTIVDRGNDDFAVFESGAILWYLAEKYDRFLSHNPKERSETLQWLMFQMGGIGPMMGQAMFFERIAKPNGDDVPFATKRYVDESRRLLEVLDTRLAGRDWLVGDAMSIADIATYPWARSYFWATVSVEGLPHLQAWFDRMDAMPKVQEALQLPEPRPSAFGKGDIDAAAKANAARFKEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SY72</accession>
    <name>A0A1M5SY72_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">30S ribosomal protein S19</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpsS</name>
        <name evidence="7" type="ORF">SAMN05444003_3190</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the universal ribosomal protein uS19 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH43477.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902787.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3190"/>
    <dbReference type="EnsemblBacteria" id="SHH43477">
        <property type="protein sequence ID" value="SHH43477"/>
        <property type="gene ID" value="SAMN05444003_3190"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015935">
        <property type="term" value="C:small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.860.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00531">
        <property type="entry name" value="Ribosomal_S19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020934">
        <property type="entry name" value="Ribosomal_S15/S19_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002222">
        <property type="entry name" value="Ribosomal_S19"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005732">
        <property type="entry name" value="Ribosomal_S19_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023575">
        <property type="entry name" value="Ribosomal_S19_S15_SF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11880">
        <property type="entry name" value="PTHR11880"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00203">
        <property type="entry name" value="Ribosomal_S19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002144">
        <property type="entry name" value="Ribosomal_S19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00975">
        <property type="entry name" value="RIBOSOMALS19"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54570">
        <property type="entry name" value="SSF54570"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01050">
        <property type="entry name" value="rpsS_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00323">
        <property type="entry name" value="RIBOSOMAL_S19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00015696"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH43477.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="92" mass="10476" checksum="5D8ECC13384A80B1" modified="2017-03-15" version="1">MARSVWKGPFVDAYVLKKAEAARESGRNEVIKIWSRRSTILPQFVGLTFGVYNGKKHIPVLVSEEMIGQKFGEYSPTRTYYGHAADKKAKRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SYV3</accession>
    <name>A0A1M5SYV3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">30S ribosomal protein S10</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rpsJ</name>
        <name evidence="6" type="ORF">SAMN05444003_3198</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Involved in the binding of tRNA to the ribosomes.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Part of the 30S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the universal ribosomal protein uS10 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH43646.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902798.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3198"/>
    <dbReference type="EnsemblBacteria" id="SHH43646">
        <property type="protein sequence ID" value="SHH43646"/>
        <property type="gene ID" value="SAMN05444003_3198"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.600">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00508">
        <property type="entry name" value="Ribosomal_S10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001848">
        <property type="entry name" value="Ribosomal_S10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027486">
        <property type="entry name" value="Ribosomal_S10_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036838">
        <property type="entry name" value="Ribosomal_S10_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11700">
        <property type="entry name" value="PTHR11700"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00338">
        <property type="entry name" value="Ribosomal_S10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00971">
        <property type="entry name" value="RIBOSOMALS10"/>
    </dbReference>
    <dbReference type="SMART" id="SM01403">
        <property type="entry name" value="Ribosomal_S10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54999">
        <property type="entry name" value="SSF54999"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01049">
        <property type="entry name" value="rpsJ_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 6" id="KW-0689">Ribosomal protein</keyword>
    <feature type="domain" description="Ribosomal_S10" evidence="5">
        <location>
            <begin position="9"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00508"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM01403"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH43646.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="104" mass="11649" checksum="3AC0719AB2BC6F61" modified="2017-03-15" version="1">MAVQSQNIRIRLKAFDYRVLDASTQEIVSTAKRTGASVRGPIPLPNKIEKFTVLRGPHIDKKSRDQFEIRTHKRLLDIVDPTPQTVDALMKLDLAAGVDVQISV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T320</accession>
    <name>A0A1M5T320_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Kynureninase</fullName>
            <ecNumber evidence="4">3.7.1.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_3214</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3-hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3-hydroxyanthranilic acid (3-OHAA), respectively.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>3-hydroxy-L-kynurenine + H2O = 3-hydroxyanthranilate + H(+) + L-alanine</text>
            <dbReference type="Rhea" id="RHEA:25143"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:36559"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="ChEBI" id="CHEBI:58125"/>
            <dbReference type="EC" id="3.7.1.3"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>H2O + L-kynurenine = anthranilate + H(+) + L-alanine</text>
            <dbReference type="Rhea" id="RHEA:16813"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16567"/>
            <dbReference type="ChEBI" id="CHEBI:57959"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="EC" id="3.7.1.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="4">Amino-acid degradation; L-kynurenine degradation; L-alanine and anthranilate from L-kynurenine: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4">Cofactor biosynthesis; NAD(+) biosynthesis; quinolinate from L-kynurenine: step 2/3.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the kynureninase family.</text>
    </comment>
    <dbReference type="EC" id="3.7.1.3" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45169.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902981.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3214"/>
    <dbReference type="EnsemblBacteria" id="SHH45169">
        <property type="protein sequence ID" value="SHH45169"/>
        <property type="gene ID" value="SAMN05444003_3214"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00253">
        <property type="reaction ID" value="UER00329"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00334">
        <property type="reaction ID" value="UER00455"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061981">
        <property type="term" value="F:3-hydroxykynureninase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030429">
        <property type="term" value="F:kynureninase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097053">
        <property type="term" value="P:L-kynurenine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009435">
        <property type="term" value="P:NAD biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006569">
        <property type="term" value="P:tryptophan catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000192">
        <property type="entry name" value="Aminotrans_V_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010111">
        <property type="entry name" value="Kynureninase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14084">
        <property type="entry name" value="PTHR14084"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00266">
        <property type="entry name" value="Aminotran_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF038800">
        <property type="entry name" value="KYNU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01814">
        <property type="entry name" value="kynureninase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 4" id="KW-0662">Pyridine nucleotide biosynthesis</keyword>
    <keyword evidence="3 4" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aminotran_5" evidence="5">
        <location>
            <begin position="17"/>
            <end position="333"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR038800"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH45169.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="396" mass="42843" checksum="30B93A62E7F916A4" modified="2017-03-15" version="1">MSNLPRKHLFDLPDGMIYLDGNSLGPLPKGVSEAVQKTVEAEWGGQLIGGWNACKWMEQPSRVGNQVGRLIGAPAGSVVMGDTLSIKVFQALAAGLQMRPDRKAILSDTGNFPSDLYMAQGLARFKDQGIELRMVEPEDVAGAIGEDIAVVMLTEVDYRTGRRHDMAAITKAAQEAGAVMVWDLAHSAGALDVEIEASGCEMAVGCTYKYLNGGPGAPAFIYVRPDLVETVEPALAGWLGHDAPFAFDLDYRPGAGIERMRVGTPPVLQLAALEEALKVWNSVTMKEVRAASVHLSDLFISEIEARCPMMSLVSPRDCAVRGSQVSFAFENGYAAMQAVIARGVIGDFRAPNVMRFGFTPLFLDDGDIIRAAEIIEDVMVNKLWNTPEYHARKAVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T6Q2</accession>
    <name>A0A1M5T6Q2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Amino acid/amide ABC transporter membrane protein 2, HAAT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_3267</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46394.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902941.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3267"/>
    <dbReference type="EnsemblBacteria" id="SHH46394">
        <property type="protein sequence ID" value="SHH46394"/>
        <property type="gene ID" value="SAMN05444003_3267"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015658">
        <property type="term" value="F:branched-chain amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06581">
        <property type="entry name" value="TM_PBP1_LivM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043428">
        <property type="entry name" value="LivM-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30482">
        <property type="entry name" value="PTHR30482"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="7"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="37"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="62"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="100"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="126"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="169"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="223"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="261"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="295"/>
            <end position="319"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH46394.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="327" mass="34956" checksum="3A4357DC7E7EB5DB" modified="2017-03-15" version="1">MIREGYINAIVLFGFLLIPICALIIEEPYTITLATRAAVLALAAVGLNIALGIGGLVSLGHAVFFGLGGYAMGILAFHAQNYIPVELGPLTINGTKSMPIIWLTAVLVSAFAALIIGLLSLRTTGVYFIMITLAFGQMFFFFSISWSAYGGEDGLSIYVRNVFPGVNTLVPIQFFGLCFTALCVALFVQSRLRASIFGLVLNSARQTPVRAETVGLNPMRLKLLAFVISGAITGLAGALFADLNRFVSPTMFSWQLSGELIVLIIIGGVGRLAGPVIGSALFVTLEHFLGEFTDFWHIWLGLILLLIVLFARGGIIGILTGKDGPHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TAS3</accession>
    <name>A0A1M5TAS3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">TRAP-type C4-dicarboxylate transport system, substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_3303</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial solute-binding protein 7 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000009">
        <property type="protein sequence ID" value="SHH47710.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072903015.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000009.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3303"/>
    <dbReference type="EnsemblBacteria" id="SHH47710">
        <property type="protein sequence ID" value="SHH47710"/>
        <property type="gene ID" value="SAMN05444003_3303"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071702">
        <property type="term" value="P:organic substance transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018389">
        <property type="entry name" value="DctP_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038404">
        <property type="entry name" value="TRAP_DctP_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33376">
        <property type="entry name" value="PTHR33376"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03480">
        <property type="entry name" value="DctP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0574">Periplasm</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012432029" evidence="6">
        <location>
            <begin position="25"/>
            <end position="337"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH47710.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="337" mass="36433" checksum="095B22AD7E5CEC7E" modified="2017-03-15" version="1">MITKLTRRAALASVAALGLATSFAAPAVADGHKLTFTLATSGSETDQRSVAMAEVFAPMVAEFADYQAGYNGTLFAQGTELEAIAGGNLTMSIASAQELAQFFPEFSIFATGYVHQDAAHQVRVFNDPLMDPFKKTVEDELGVKLLSVMYLGRRHVNLRQTRDELDVQTPADLAGVNLRMPGTDAWQFLGAALGASPTPLAFSEVYTSLASGAIDGQDNPLPTVVDQKFYEVTKQISLTSHLVDLNYIAFSKETWDSLTPEQQLTVQRAADAAASYGRLKQLDKENSLADFIRSQGVEIYTPDLAAFREHVQGQYVGSEAAAAWPEGVLDRINELGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5KZ46</accession>
    <name>A0A1M5KZ46_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized membrane protein HdeD, DUF308 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0005</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58016.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898322.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG58016">
        <property type="protein sequence ID" value="SHG58016"/>
        <property type="gene ID" value="SAMN05444003_0005"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005325">
        <property type="entry name" value="DUF308_memb"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03729">
        <property type="entry name" value="DUF308"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="5"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="61"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="85"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="116"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="141"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG58016.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="172" mass="18405" checksum="5B6969890C7A0C59" modified="2017-03-15" version="1">MKPSIVWPAIGVLMIVFGIIALLNPFRATIAVELMLGWMFLIAAVIQVVAIFKVDTWGQRIWALLLVVVNVFVGISLLSNPLAGVLALTFVIGILFGASGLVKFFMSFGMRGTPMFWPMLLSGIISVILAFMILANYPASAVSLLGILLSVELISSGVAMMFLGRGEDEAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5KZ48</accession>
    <name>A0A1M5KZ48_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Phospholipase D</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="16">Choline phosphatase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="19" type="ORF">SAMN05444003_0004</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="19 20" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="19 20">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Could be a virulence factor.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Secreted</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG57995.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898321.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0004"/>
    <dbReference type="EnsemblBacteria" id="SHG57995">
        <property type="protein sequence ID" value="SHG57995"/>
        <property type="gene ID" value="SAMN05444003_0004"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008808">
        <property type="term" value="F:cardiolipin synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032049">
        <property type="term" value="P:cardiolipin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022924">
        <property type="entry name" value="Cardiolipin_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027379">
        <property type="entry name" value="CLS_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025202">
        <property type="entry name" value="PLD-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001736">
        <property type="entry name" value="PLipase_D/transphosphatidylase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13091">
        <property type="entry name" value="PLDc_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13396">
        <property type="entry name" value="PLDc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00155">
        <property type="entry name" value="PLDc"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04265">
        <property type="entry name" value="bac_cardiolipin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50035">
        <property type="entry name" value="PLD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="12" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="13 17" id="KW-0472">Membrane</keyword>
    <keyword evidence="14" id="KW-0594">Phospholipid biosynthesis</keyword>
    <keyword evidence="15" id="KW-1208">Phospholipid metabolism</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0677">Repeat</keyword>
    <keyword evidence="7" id="KW-0964">Secreted</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <keyword evidence="9 17" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="11 17" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="34"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="domain" description="PLD phosphodiesterase" evidence="18">
        <location>
            <begin position="216"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="domain" description="PLD phosphodiesterase" evidence="18">
        <location>
            <begin position="391"/>
            <end position="418"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00018392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023209"/>
        </source>
    </evidence>
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            <dbReference type="ARBA" id="ARBA00023264"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00029594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS50035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="SHG57995.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="478" mass="53484" checksum="5FDD219DB550C9E2" modified="2017-03-15" version="1">MTALILLSLHILILVTFTTRILLRDDLSPQARLAWFVVLMVLPYTGFLIYFLFGEIDLGNKANTRHEMTFGLIRERAGSLMGAPENTDRMIDLTYRPAFRYAASINGFHPVDGNKAELMADAAETTARLIADIDAAENYVHVLYYIWLDDTTGVDVAQALIRATKRGVVCRAMADGLGSRAFIKSPHWQAMKDAGVKMAVALPLDQPVRALLTSRIDLRNHRKITVIDSKVTYCGSSNCADPEFRVKPKYAPWIDIMLRFEGPIVAQNELLFLSDWFQATDENLDDFMLTATSIEGGFPAQIMGDGPTERKGATPQLFANLIACARREITLTTPYFVPDATVLEALCSAAHRGVDVTLVFPKNNDSWIVAAASRSYYRKLLQAGCHIFEYKPGLLHAKTLTVDDKVSLIGSSNLDIRSFDLNYENNLMLQDDEVTGGICDRQMAYIEDSDPLYLQDVLDWPYRKRIWNNVIATIGPIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5KZ60</accession>
    <name>A0A1M5KZ60_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Esterase/lipase superfamily enzyme</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0006</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58041.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898323.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG58041">
        <property type="protein sequence ID" value="SHG58041"/>
        <property type="gene ID" value="SAMN05444003_0006"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010297">
        <property type="entry name" value="DUF900_hydrolase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05990">
        <property type="entry name" value="DUF900"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="9"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG58041.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="356" mass="39752" checksum="4C6E88872DD8EE25" modified="2017-03-15" version="1">MTALPLRIFVANWFGVLAFSCFVSIAVSIVPSQPSAQTTQADVVIPYITLRDRTGSDDLDDYYGQDRSEMSSGRCLVDIRGFDFLSTAAEISPIRIPEEILSVEAIEEVPRDALWAELKDTANGRAPNLYVHGFFIGFEKGCRRAASFTQNTATEGAFMWFSWPSDGNLLNYARDEVDMYWSVPDLAETILEMQEEFGEDQYNLVGHSLGTRGLFLSLYHLSNLDPQVQADNVVLLAPDIDFEIFRKLLPRVIGLANRITIYTAPNDRPLGLSRQLHGYERLGESGNDVALLEGVEIIETDDLDNSSPSGHLYHLYSDEVGTDLNLLLTQSLGAADRPNLKQISENRWSLVPFDDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L3T7</accession>
    <name>A0A1M5L3T7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0074</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59449.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG59449">
        <property type="protein sequence ID" value="SHG59449"/>
        <property type="gene ID" value="SAMN05444003_0074"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG59449.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="236" mass="26161" checksum="B078D97C1F8780E2" modified="2017-03-15" version="1">MIRPLARNVASILLFGLAFCGVVLVILWAWFASYSFRKVEASIAREAIKVIAYDASLVFPTEELVLGRAYWSSARSPCVYTTNEWEIDGNSGVLTWDNWPRGDRASCNDFFVSTVRTADPRVSVPRGCVPAFVISDTGGPRLSYLVAAADGTRQDGLLSGELSGDRLRQITQLGRNGNFYYAPDFVAGNGMDFVDIDLMGAEQCNGFKIFRYQTSVDDVWQAQEDLREHGYVVGLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L4H1</accession>
    <name>A0A1M5L4H1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Thiamine diphosphokinase</fullName>
            <ecNumber evidence="1">2.7.6.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0096</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EC" id="2.7.6.2" evidence="1"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59886.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898445.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0096"/>
    <dbReference type="EnsemblBacteria" id="SHG59886">
        <property type="protein sequence ID" value="SHG59886"/>
        <property type="gene ID" value="SAMN05444003_0096"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030975">
        <property type="term" value="F:thiamine binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004788">
        <property type="term" value="F:thiamine diphosphokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009229">
        <property type="term" value="P:thiamine diphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006772">
        <property type="term" value="P:thiamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07995">
        <property type="entry name" value="TPK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006282">
        <property type="entry name" value="Thi_PPkinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007373">
        <property type="entry name" value="Thiamin_PyroPKinase_B1-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036371">
        <property type="entry name" value="TPK_B1-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007371">
        <property type="entry name" value="TPK_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036759">
        <property type="entry name" value="TPK_catalytic_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04265">
        <property type="entry name" value="TPK_B1_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04263">
        <property type="entry name" value="TPK_catalytic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00983">
        <property type="entry name" value="TPK_B1_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63862">
        <property type="entry name" value="SSF63862"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63999">
        <property type="entry name" value="SSF63999"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01378">
        <property type="entry name" value="thi_PPkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 7" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TPK_B1_binding" evidence="6">
        <location>
            <begin position="126"/>
            <end position="200"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00013245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG59886.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="217" mass="22808" checksum="4265A39B073FB4E8" modified="2017-03-15" version="1">MIVERSEPVTLVGGAQLGPDDLSITTALAPTVVAADSGADHLLAADIAPTAIFGDLDSISDAARAKYADVLHQINEQDTTDLSKSLRHIQAPVVLGVGFIGDRIDHTFAALHSALAHIDRPIVFLGSDDVVFVLKDREVSLAVPTQTPLAVLPLIESVVSSEGLKWELDQTVLSMAGIISSSNQTISAPARISVRGAVAVTLPRDQLRAAIDAVRAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L5T7</accession>
    <name>A0A1M5L5T7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pentatricopeptide repeat domain-containing protein (PPR motif)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0117</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60336.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0117"/>
    <dbReference type="EnsemblBacteria" id="SHG60336">
        <property type="protein sequence ID" value="SHG60336"/>
        <property type="gene ID" value="SAMN05444003_0117"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013216">
        <property type="entry name" value="Methyltransf_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="Pentatricopeptide_repeat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08241">
        <property type="entry name" value="Methyltransf_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01535">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="75"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="177"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="211"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="245"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="domain" description="Methyltransf_11" evidence="2">
        <location>
            <begin position="347"/>
            <end position="437"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG60336.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="499" mass="55352" checksum="5C3393CD3A16AE32" modified="2017-03-15" version="1">MKADEPAKKQLDALVKLLDRGRDHDALSRAARLSRKYPDNLFVLNIIASAYGKLGEHDKAIRVFESIRSRDPEIPQLHHNLAISFFRTGRLNEATTAMKEAVRLDPLNTTLQSNLGAMYLVGSDVMGARDAFAAAAQLAPDSPDAQWNFERMERAARNLRKAALIVEDALHENPNDPVLLCKAGSSYSHLGDPKSAMKYFQRSRELDPDSPELYFHIGQFWKKNKQMGKAVQAFERATELNPSYSDAFAQIGSILKKAGHTDRAINCYERVLEISPENVEVAHFLSAMKGETTDTAPAQYVTDLFDSYASRFEANLVGDLEYRGPEVLRKMLDAALSDGARFKAGIDLGCGTGLSGMAFRDVLDHLAGVDLSANMVGLAEEKGVYDRLTVSDVVSAISDSDVAFDFFLSTDVFVYVGDLEDLFAAVRENAAQGALFVFSTEDLEEGTFALLPSGRYAHSRDYIAKMCDRHDMKIVDFGRHPLRMEFGKMLVGGYYILRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LA98</accession>
    <name>A0A1M5LA98_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">D-lactate dehydrogenase (Cytochrome)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0188</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61951.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898557.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0188"/>
    <dbReference type="EnsemblBacteria" id="SHG61951">
        <property type="protein sequence ID" value="SHG61951"/>
        <property type="gene ID" value="SAMN05444003_0188"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.45.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016166">
        <property type="entry name" value="FAD-bd_PCMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016164">
        <property type="entry name" value="FAD-linked_Oxase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004113">
        <property type="entry name" value="FAD-linked_oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006094">
        <property type="entry name" value="Oxid_FAD_bind_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016171">
        <property type="entry name" value="Vanillyl_alc_oxidase_C-sub2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02913">
        <property type="entry name" value="FAD-oxidase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01565">
        <property type="entry name" value="FAD_binding_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55103">
        <property type="entry name" value="SSF55103"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51387">
        <property type="entry name" value="FAD_PCMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding PCMH-type" evidence="1">
        <location>
            <begin position="35"/>
            <end position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG61951.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="457" mass="48770" checksum="04B28AD61A659E97" modified="2017-03-15" version="1">MTIETAIAELETLLGERFSRSKSDLDQHSHSETYFDPIKPDGVAFPETTQDVSEIIKVCSKHNCPVIAWGTGTSLEGHSLAVRGGVTLDLSLMNKVLEVNAEDMDVSVQPGLTRMALNDELRATGLFFPVDPGANASLGGMASTRASGTTTVRYGTMRDNVMGLEVVLADGRIIRTGTRARKSSAGYDLTGLFVGSEGTLGIITELTLKLHGQPPAIGAAVCAFKTVGDAVDTVIETIQMGVPMARIELLDAASVAAVNAQGALGLPEQPHLLVEFHGSESAVAEDAETLKEIANEHRSISFNWATKTEDRNKLWQVRHDAYHAITQSKPRSTALVTDVCVPISQLATAIEETQTDIENSPIEGPILGHVGDGNFHAILLVNPQNTAEIRVAKELSAKMAERSLRLGGTVTGEHGVGMGKLDLMQAEHGDAWSVMGLIKKAIDPKSIMNPGKLVNQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LH17</accession>
    <name>A0A1M5LH17_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">NADP-dependent 3-hydroxy acid dehydrogenase YdfG</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0281</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64240.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898710.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0281"/>
    <dbReference type="EnsemblBacteria" id="SHG64240">
        <property type="protein sequence ID" value="SHG64240"/>
        <property type="gene ID" value="SAMN05444003_0281"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG64240.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="212" mass="22676" checksum="E9CACBDA072D6EBA" modified="2017-03-15" version="1">MTKIALITGASRGLGAALAKELATTHHVIAVAKTTGALEELDDAIQTAGGQATLAPMNITIDSAMQQLCRSIFDRWGKLDLWLHTAIHAAPLTPANHIGEKDFSKSVDINITATSRLIKYVAPLLGTNGRAVFFDDPQAGNSFFGSYGATKAAQIALARSWQSETRNTGPKVSIVTPNPMPTATRARFFPGEDRTPLFAPEAEAKRLLSSFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LIB9</accession>
    <name>A0A1M5LIB9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0300</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64660.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG64660">
        <property type="protein sequence ID" value="SHG64660"/>
        <property type="gene ID" value="SAMN05444003_0300"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="48"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="80"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG64660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="111" mass="12506" checksum="FF1353FE42CEF884" modified="2017-03-15" version="1">MVFILVPVNLASLWFIPFFGGDWIAGLAIAGMALNIPIMFKDRGMSKLMALPHLIFWIPLVLFAYWILTNKGGVPSHYVVYLRVLIAVSVVSLVFDIPDFIRWLRGDRATA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LJ56</accession>
    <name>A0A1M5LJ56_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0321</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65058.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898767.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG65058">
        <property type="protein sequence ID" value="SHG65058"/>
        <property type="gene ID" value="SAMN05444003_0321"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013155337" evidence="1">
        <location>
            <begin position="22"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG65058.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="71" mass="6890" checksum="0397D2A7A7B86DFD" modified="2017-03-15" version="1">MTFVKLAAAAALAVTATTATAGGLAPEIDEPPVVIVDPVEPTSSLSGLVVPAILVALIAVAASSESDSDSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LPY1</accession>
    <name>A0A1M5LPY1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0415</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67108.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898902.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG67108">
        <property type="protein sequence ID" value="SHG67108"/>
        <property type="gene ID" value="SAMN05444003_0415"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="64"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="92"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="123"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG67108.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="153" mass="16817" checksum="5A6964433CBA7CD7" modified="2017-03-15" version="1">MLNRVFPASFDNQFPGQNVALYVFYALTALTLWRSQHHLFADDGGAQSIASIPLDTYSNNAADTVVGIFGLWGVSQLIIGLIYLLAAIRYRALIPFLYLLFALEYAMRLWVGANKAIETVETAPGSVINLPFMIAGIALFALSIWNGKNNSEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LQT0</accession>
    <name>A0A1M5LQT0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA-3-methyladenine glycosylase II</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0429</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67437.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0429"/>
    <dbReference type="EnsemblBacteria" id="SHG67437">
        <property type="protein sequence ID" value="SHG67437"/>
        <property type="gene ID" value="SAMN05444003_0429"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006284">
        <property type="term" value="P:base-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00056">
        <property type="entry name" value="ENDO3c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011257">
        <property type="entry name" value="DNA_glycosylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003265">
        <property type="entry name" value="HhH-GPD_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00730">
        <property type="entry name" value="HhH-GPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00478">
        <property type="entry name" value="ENDO3c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48150">
        <property type="entry name" value="SSF48150"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ENDO3c" evidence="1">
        <location>
            <begin position="58"/>
            <end position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG67437.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="214" mass="23715" checksum="4BF63892B5F26F0E" modified="2017-03-15" version="1">MGRAMTVGRIIETDACVAEGADWLAAHDPRFAEALDLVGPLPLRRKPDGFSQLLNAIVGQQVSVASANAIWAKLEAAEMYTDAAIRQVDEEHMRSLGLSRQKARYACALANAQIDYDALRDTQTDEVIVILTEVPGIGTWTAEIYAMFSLGRADIFASGDLALQEGARMLFDLDARPTEKQMRAMAQDWSPWQSVAARILWAYYAYMKSREGIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M2Y4</accession>
    <name>A0A1M5M2Y4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Two-component system, NtrC family, nitrogen regulation response regulator NtrX</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_0613</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG71598.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899165.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0613"/>
    <dbReference type="EnsemblBacteria" id="SHG71598">
        <property type="protein sequence ID" value="SHG71598"/>
        <property type="gene ID" value="SAMN05444003_0613"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002197">
        <property type="entry name" value="HTH_Fis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002078">
        <property type="entry name" value="Sigma_54_int"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025944">
        <property type="entry name" value="Sigma_54_int_dom_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02954">
        <property type="entry name" value="HTH_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00158">
        <property type="entry name" value="Sigma54_activat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01590">
        <property type="entry name" value="HTHFIS"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00688">
        <property type="entry name" value="SIGMA54_INTERACT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50045">
        <property type="entry name" value="SIGMA54_INTERACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="4" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="3" id="KW-0902">Two-component regulatory system</keyword>
    <feature type="domain" description="Response regulatory" evidence="8">
        <location>
            <begin position="3"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma-54 factor interaction" evidence="7">
        <location>
            <begin position="141"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="6">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG71598.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="466" mass="51696" checksum="9C3798CCB23A2076" modified="2017-03-15" version="1">MGDILITDDERDIRELIADILQDEGFTTRLAGNSDECMKQIETEVPALMILDIWLKDSNMDGIDILKSVKRDHPEVPIVIISGHGNIEIAVAAIKQGAYDFIEKPFNIDQLMVVIRRAMETARLRKENVELKRGEAVSADMLGESASFRTLKSQLDKVTKSNGRVMLTGPAGSGKEIAARYIHANSDRADAPFVTVSSASIEPDRMEEVLFGRESAGRGVEKGLLEQANGGVIYFDEVADMPVGTQSKILRVLVDQRFQRVGGNDNVQVDLRVVSSTNKDLMEEIDLGSFREELYHRLNVVPISVPSLEERREDIPLLAEYFIESFNKSQGLPMRELGEDARALLQTMLWPGNVRQLKNVMERVLILGENTEEISAKELPASEEPAAEEGRVVLSGGLATLPLREARELFEREYLLTQINRFGGNISRTASFVGMERSALHRKLKSLGVATTNKSGARVAYVEADA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M4J8</accession>
    <name>A0A1M5M4J8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Phosphate transport system permease protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">SAMN05444003_0635</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 10">Cell inner membrane</location>
            <topology evidence="2 10">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="9">Cell membrane</location>
            <topology evidence="9">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 10">Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72178.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899203.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0635"/>
    <dbReference type="EnsemblBacteria" id="SHG72178">
        <property type="protein sequence ID" value="SHG72178"/>
        <property type="gene ID" value="SAMN05444003_0635"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005315">
        <property type="term" value="F:inorganic phosphate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006817">
        <property type="term" value="P:phosphate ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011864">
        <property type="entry name" value="Phosphate_PstC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022182">
        <property type="entry name" value="PstC_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12501">
        <property type="entry name" value="DUF3708"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02138">
        <property type="entry name" value="phosphate_pstC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-0592">Phosphate transport</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4 9" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="43"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="197"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="264"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="297"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="338"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="393"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="460"/>
            <end position="485"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="11">
        <location>
            <begin position="260"/>
            <end position="481"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU363054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG72178.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="493" mass="52150" checksum="8907089015ADF286" modified="2017-03-15" version="1">MPNTILILIVLALGVIGFVLGRQRAMASAGGNSRNLHSLPSYYGYNVACATTLPAMGLLILWLLVQPLIINSSVSGLVSDQASEEGASLDLIMSDVRRVADGLDTAVETGVLTEEEVEALDAEQDDIRDLLAGVGFALGSDVTPSTLEAAKSYRAMNEVGDTWKSVFVIATALTGLLVSWRMTNKDFRARNVVEQGVLAILIFAASIAILTTLGIVLSLIFNTMEFFRLYPASEFFFGLSWNPSFSGRGGGSELGILPLLWGTLYISLIALIVAVPIGLFAAIYLSEYASKPVRSVAKPLLEVLAGIPTIVYGLFALLTVGPLLVEVFGQKGFLGVDWMSGGTAVMTAGLVMGIMLIPFVSSLSDDIINAVPQSMRDGSLGLGATHSETVRQVILPAALPGIVGAILLAASRAIGETMIVVLGAGAAARLSMNPFEAMTTVTAKIVSQLTGDSDFSSPEALVAFALGITLFVITLGLNIFALYIVRKYREQYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MDV6</accession>
    <name>A0A1M5MDV6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Ca2+-binding protein, RTX toxin-related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0775</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75342.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899441.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0775"/>
    <dbReference type="EnsemblBacteria" id="SHG75342">
        <property type="protein sequence ID" value="SHG75342"/>
        <property type="gene ID" value="SAMN05444003_0775"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090729">
        <property type="term" value="F:toxin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.150.10.10">
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018511">
        <property type="entry name" value="Hemolysin-typ_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001343">
        <property type="entry name" value="Hemolysn_Ca-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003995">
        <property type="entry name" value="RTX_toxin_determinant-A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011049">
        <property type="entry name" value="Serralysin-like_metalloprot_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00353">
        <property type="entry name" value="HemolysinCabind"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01488">
        <property type="entry name" value="RTXTOXINA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51120">
        <property type="entry name" value="SSF51120"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00330">
        <property type="entry name" value="HEMOLYSIN_CALCIUM"/>
        <property type="match status" value="12"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0964">Secreted</keyword>
    <keyword evidence="3" id="KW-0800">Toxin</keyword>
    <keyword evidence="4" id="KW-0843">Virulence</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="128"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="778"/>
            <end position="799"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG75342.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="1484" mass="155362" checksum="6B866F9A27C2805D" modified="2017-03-15" version="1">MVSVSGGNVGVGAYYGVYVDTPVGGVGLAGEAQAGVTFEDGDVHVGGTAGASGGNLTVDAEVNGRVGYNGSFGDLIDIDGGVNGSNQVSVYYGSAIVPQSVVEELTGGRGSTIFRGDEFNGLDQLATEQQGTPTTTPPSDDDSSSGTTQTSVISNDGITSSTSTGQTTSGGTNLTLGNGDAVIHGTVYDANDSIFDTEGPEADLGSTSIGPNDDYVVTYDFDQGGVQPVVLDLDGDGVEVAFGDGPLFDWDEDGYLEQGSWATGGDGFLVIDLDENDKRVAGGANGTIKSRKEIVWTDWLSLSDFERSDDVASGLFGFSFASFFRMLTATDLEALAILESKNGWGNGDGVLNSSDTVWSELKIWQDLNQDGRNEIGDGEVRTLDDWGITEIALTYDDGTGFDDQSNDIEVFGNTLHGLASYKHDGSELNFGTMTNGSYVVEGGVGDIALDYERNGLKKQTSGADITWIAEEDGSVAAKYFDISKAGSANKTISGNAYNGVYGDSRNNEISAVLATIDLILDGAGGKDTLWGGTGNDVLLGGNGVDKLYGGNGDDYLSIGTNNGSTYEIAKGGSGNDTYYVDSTSGYAGIGYETENGGFDQLVFGDLLLEDVTFARHGGISDRVVIRAAGDFDVHWDHYQHLEQMSFADGLQLQFLNVTDVLAGSSSAQTINGGSSGDLIDGRSGADTLYGNSGNDILLGGKGDDRLYGGSGQDQLIGGAGDDYLRDDSTDQNVFNGGSGVDEVSYFGRDDGIEVDLKDGDSSDGDILIGIENILGSEHGNDRLHGDAGSNEIKGSGGDDKLYGRQGADILKGGKDDDYLNGGDGADKLYGEDGKDTLNGTSGDDILNGGAGADTFRFDRHHENDVIKDFENNSDTLLLGNFGALFGSWKGLQEYVVDNGQSSGNVVFDFGGNDSLTIEGIGLGALKNDFDVVGGSVETVGTSSDDTIDGTDVNDAIYGLAGNDNLGGGHGNDYLYGGDGDDLLRGSKGSDYLVGGDGNDNLRDDSTDVDFYYGGSGTDRADYYYRNSTVFVDLESGENTDGDKYSSIENIRGSGDYDDRLFGDTGSNEIWGSGGDDKLYGRQGADILKGGKDDDYLNGGDGADMLYGEDGADILNGGNSDDILKGGAGADTFRFYRHNENDVINDFENNVDTIEFGNFGALFGSWEGLKQFVVDDGSVSGNVVFDFGGNDSLTIEGIGINALKNDVDFLDGGVETVGTSGVDAIDGTEVNDAIYGLAGNDNLAGGHGDDYLYGGSGDDLLRGSKGSDYLVGGEGNDDLRDDSTDVDYFYGGDGIDRVDYSNRNSAVFVDLVSGENTDGDKYSSIENIRGSGDYDDRLFGDTGSNEIWGSGGDDKLYGRQGTDILKGGKGDDYLSGGDGADKLYGEDGADILNGGNSDDILNGGAGADTFRFYRHNENDVINDFENNVDTIELRGFEGIFSTSEQAISDFASNVGDDVVFDFGHNDTLTILNTTTGQLLNDLEVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MGD6</accession>
    <name>A0A1M5MGD6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF1638 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0820</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76400.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899505.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0820"/>
    <dbReference type="EnsemblBacteria" id="SHG76400">
        <property type="protein sequence ID" value="SHG76400"/>
        <property type="gene ID" value="SAMN05444003_0820"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012437">
        <property type="entry name" value="DUF1638"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07796">
        <property type="entry name" value="DUF1638"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1638" evidence="1">
        <location>
            <begin position="49"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07796"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG76400.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="208" mass="23503" checksum="E0B8E43BD27F34F4" modified="2017-03-15" version="1">MQASDEELTTQGLDATGDGRVLLLACGALAREIIAVQQQNRLSHLDLQCLPAIYHNHPERIVPAIKEAVTKYNDDYDSIFVVYADCGTGGLLEAACQELGVGMVKGPHCYSFFEGNDAFEARDELTAFYLTDFLVRQFNAFVWKPLGLDRHPELRDMYFGNYEKLVYQAQLDDPDLQKLAESYAEKMGLTYEYRYTGYGDLETTLKTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MGV6</accession>
    <name>A0A1M5MGV6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acrylyl-CoA reductase (NADPH)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0802</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75943.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900402.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0802"/>
    <dbReference type="EnsemblBacteria" id="SHG75943">
        <property type="protein sequence ID" value="SHG75943"/>
        <property type="gene ID" value="SAMN05444003_0802"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014188">
        <property type="entry name" value="Acrylyl-CoA_reductase_AcuI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43677:SF1">
        <property type="entry name" value="PTHR43677:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02823">
        <property type="entry name" value="oxido_YhdH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PKS_ER" evidence="1">
        <location>
            <begin position="14"/>
            <end position="323"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG75943.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="327" mass="34197" checksum="777CAB9575CFBBDF" modified="2017-03-15" version="1">MFNALVVEKDDEGKTSAAVQQISEDQLPEGDVVVAVDYSTVNYKDGLCIGPGGGLVRNYPHVPGIDLAGTVESSSDDRYKAGDKVVLTGWRVGEVHWGGYAQKARVKADWLVPLPDGLDTRQAMAVGTAGFTAMLAVMALEDHGIKDGPVLVTGAAGGVGSVATAILAKLGHEVAAVTGRPETSDYLTGLGATQIVAREELNETTKRPLEAETWGGCVDAVGGDMLARVLGQMKYGASVSAVGLAGGAGLPATVIPFLLRGVNLLGIDSVMQPFENRQRAWQRIASDLPMDKLDAMIEPAVLSDLPKLGKDILKGQVRGRVVVDVNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MHU8</accession>
    <name>A0A1M5MHU8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Glycerol-3-phosphate dehydrogenase</fullName>
            <ecNumber evidence="6">1.1.5.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_0837</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>a quinone + sn-glycerol 3-phosphate = a quinol + dihydroxyacetone phosphate</text>
            <dbReference type="Rhea" id="RHEA:18977"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:57597"/>
            <dbReference type="ChEBI" id="CHEBI:57642"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
            <dbReference type="EC" id="1.1.5.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 6">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.</text>
    </comment>
    <dbReference type="EC" id="1.1.5.3" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76826.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899531.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0837"/>
    <dbReference type="EnsemblBacteria" id="SHG76826">
        <property type="protein sequence ID" value="SHG76826"/>
        <property type="gene ID" value="SAMN05444003_0837"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009331">
        <property type="term" value="C:glycerol-3-phosphate dehydrogenase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052591">
        <property type="term" value="F:sn-glycerol-3-phosphate:ubiquinone-8 oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006072">
        <property type="term" value="P:glycerol-3-phosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.870">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031656">
        <property type="entry name" value="DAO_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038299">
        <property type="entry name" value="DAO_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000447">
        <property type="entry name" value="G3P_DH_FAD-dep"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11985">
        <property type="entry name" value="PTHR11985"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16901">
        <property type="entry name" value="DAO_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01001">
        <property type="entry name" value="FADG3PDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00977">
        <property type="entry name" value="FAD_G3PDH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0274">FAD</keyword>
    <keyword evidence="3 6" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5 6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAO" evidence="7">
        <location>
            <begin position="6"/>
            <end position="381"/>
        </location>
    </feature>
    <feature type="domain" description="DAO_C" evidence="8">
        <location>
            <begin position="402"/>
            <end position="509"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007330"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU361217"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF16901"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG76826.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="515" mass="58019" checksum="65FA939B18495D36" modified="2017-03-15" version="1">MNPDFDLFVIGGGINGVGIARDAQGRGLKVGLAEMDDLASKTSSASTKLFHGGLRYLEFFEFSLVRKALIEREVLLRAMPHISWPMRFVLPYHKDMRFEGETPTSKLLSTVMPWMKGRRPSWLIRLGLAMYDNLGGRKILPRTRTLHLQTNPVGKPLKSKFKLAYEYSDCWVEDSRLVVLNARDAEERGAKIMTRTKVVSAERVDGLWSIVLEKDGKQRTVAARGLVNAGGPWVEDIVKNTVRLNSTEGIRLVRGSHIVTKRLFDHEKAYFFQGEDGRIIFAIPYETDFTLIGTTDAEHMELNEAPTATQEEQDYLLEFANNYFTQTLTRDDIVWTYSGVRPLYDDGAKSATAATRDYVLSLDTNGPVLLSVFGGKITTYRKLAENVLAKLEDHVGGTGDWTAEVPLPGGEFPVSEVNARIRALKEDYPFLSDRWAKRLFRAYGTDARDILADSRSATDLGQDFGADLTEAEVRWLMKKEYALTAVDVVWRRSKLGLRLNDDQIRAIDDFMKSAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MJR7</accession>
    <name>A0A1M5MJR7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Hint domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0862</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77427.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899568.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0862"/>
    <dbReference type="EnsemblBacteria" id="SHG77427">
        <property type="protein sequence ID" value="SHG77427"/>
        <property type="gene ID" value="SAMN05444003_0862"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028992">
        <property type="entry name" value="Hedgehog/Intein_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036844">
        <property type="entry name" value="Hint_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13403">
        <property type="entry name" value="Hint_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51294">
        <property type="entry name" value="SSF51294"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hint_2" evidence="2">
        <location>
            <begin position="32"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13403"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG77427.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="224" mass="25072" checksum="5A4BB3B537F78D8F" modified="2017-03-15" version="1">MILKDQSQTNLAADRSTERSQFDGPIYKDAAPCFTEGTRIIALGGEKPVENIQIGDQILTADHGFQTVRWVGRRHVSQDDLVQYPQLRPYIIKKGAFGNQRDLRVSPQHGMARRINGKETLLRAKNVEQELGSDAAVLDLDCKEVLYFHILFDQHELVFAEGALSEAYLPGPSAIGSLDQDARDELLFLFPELHDIWTSAKPTHAVFGRPARSYFEPDAIKIAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MQB1</accession>
    <name>A0A1M5MQB1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0954</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79426.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899701.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0954"/>
    <dbReference type="EnsemblBacteria" id="SHG79426">
        <property type="protein sequence ID" value="SHG79426"/>
        <property type="gene ID" value="SAMN05444003_0954"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018391">
        <property type="entry name" value="PQQ_beta_propeller_repeat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002372">
        <property type="entry name" value="PQQ_repeat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011047">
        <property type="entry name" value="Quinoprotein_ADH-like_supfam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13360">
        <property type="entry name" value="PQQ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00564">
        <property type="entry name" value="PQQ"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50998">
        <property type="entry name" value="SSF50998"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG79426.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="430" mass="45221" checksum="7F2879E07C0C4502" modified="2017-03-15" version="1">MVRSFVGAIAGLAFLASCGEQDVILPGERLDLRPDQAIENEVRPINFASPVTNANWTHRNGEPDHSIRHPALGANLTQVFSVDIGEGDSRRARITADPVVENGVVYTLDARARVTATNINGTPLWSVDLTPSSDGANDASGGGLAVDDGRLYVATGFGELTVLNAATGGEIWTQDLDAPGGSPPTVRGDLVYVVTRDSRAWAVETDTGRIRWQINGTPSVGNFSGGAGPAVTSEIAVFPMPSGEVLGAFPQGGLRRWSSVVTGQRLGESAADISDIAGDPVISGDRVYAANFAGRLVAMKTTNGDRIWTATEGAVSPVWPAGGSVFVVNEISQLVRLDDRDGSVIWKVDLPKFTETRFRQQRTVFAHYGPVLASGRLIVASSDGVIRQFDPTSGALVGSVAIEGGAASNPIVAGQTLYVVSKEGRLVAFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MRC9</accession>
    <name>A0A1M5MRC9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sarcosine oxidase subunit beta</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0972</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79777.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899718.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0972"/>
    <dbReference type="EnsemblBacteria" id="SHG79777">
        <property type="protein sequence ID" value="SHG79777"/>
        <property type="gene ID" value="SAMN05444003_0972"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008115">
        <property type="term" value="F:sarcosine oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046653">
        <property type="term" value="P:tetrahydrofolate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001763">
        <property type="entry name" value="Rhodanese-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006278">
        <property type="entry name" value="SoxB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01373">
        <property type="entry name" value="soxB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50206">
        <property type="entry name" value="RHODANESE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rhodanese" evidence="1">
        <location>
            <begin position="35"/>
            <end position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG79777.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="414" mass="44885" checksum="8959CA1B45DCF9D8" modified="2017-03-15" version="1">MKRYSAFAIAKEAIRQHTGWTRAWASPEPKKKYDVVIVGAGGHGLATAYYLGKNFGITNVAVIDKGWLGGGNTGRNTTIIRSNYLQDPSAAIYEKARSLYETMSQDLNYNVMFSPRGVIMLAQTQHEIRGYKRTAHANSLQGVQTEWIGPERVKELCPIINLDGPRYPVLGGLWQARGGSARHDAVAWGYARACSDMGMDIIQQCEVTGVMTEGGKVKGVNTSKGDILCDKLGMVVAGHASVLAGMAGFKLPIESVPLQALVSEPIKPCMDVVIMANTVHGYMSQSDKGEMVIGGGTDGHNNYTQRGSFHHIEETVRALVETFPMIARLKMLRQWGGIVDVTGDRSAILSKTPVDGIFVNCGWGTGGFKAIPGSGWAMAELMAKGYSPLTEEFNMFRFKEGKFIDESVAAGVAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MRS4</accession>
    <name>A0A1M5MRS4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Iron(III) transport system ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_0978</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79905.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899723.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0978"/>
    <dbReference type="EnsemblBacteria" id="SHG79905">
        <property type="protein sequence ID" value="SHG79905"/>
        <property type="gene ID" value="SAMN05444003_0978"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015408">
        <property type="term" value="F:ABC-type ferric iron transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03259">
        <property type="entry name" value="ABC_Carb_Solutes_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015853">
        <property type="entry name" value="ABC_transpr_FbpC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013611">
        <property type="entry name" value="Transp-assoc_OB_typ2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08402">
        <property type="entry name" value="TOBE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="7"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="39"/>
            <end position="46"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG79905.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="357" mass="39270" checksum="63C48C7684297EE7" modified="2017-03-15" version="1">MTDTPRLALTNISKSFGGQKVVDDVSLDIMPGQVTCLLGPSGCGKSTTLRITAGVEMQDSGSIHLDGNLICDTKHHVPPENRSIGLMFQDFALFPHLSVAANVGFGIPKSEAHKRVPELLAKVGMQRHIDRFPHELSGGEQQRVALARALAPRPRVMLMDEPFSGLDDRLRDEIRDETLDVLKAEGTAVLLVTHEPTEAMRMADEIALMRKGRIVQRGAPYNIYNSPIDLEAAKFFSDINIISGEVQGALTRTAFGEFLAPGVENGQVVDICIRPHHLKIDFDRHGRGPNPTPSDGTAARGIVKRARYVGSQSIVEFKMDSDGSILTAHIPSVFLPKPDTPLWLMIRRDRCFVFPRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MWK4</accession>
    <name>A0A1M5MWK4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sporulation related domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1066</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81706.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899802.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1066"/>
    <dbReference type="EnsemblBacteria" id="SHG81706">
        <property type="protein sequence ID" value="SHG81706"/>
        <property type="gene ID" value="SAMN05444003_1066"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042834">
        <property type="term" value="F:peptidoglycan binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1070">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007730">
        <property type="entry name" value="SPOR-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036680">
        <property type="entry name" value="SPOR-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05036">
        <property type="entry name" value="SPOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110997">
        <property type="entry name" value="SSF110997"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51724">
        <property type="entry name" value="SPOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SPOR" evidence="1">
        <location>
            <begin position="250"/>
            <end position="329"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG81706.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="329" mass="33518" checksum="9A768D7F0033E4D9" modified="2017-03-15" version="1">MSSNALKSHAKTKVLALSIGALVLTGCDENGEFQLPSFGAENSAGASTFAAPSVSLVERDVEAPEVFSVDENGLWDGRPSLGGVWVAHPDAVDPERVIIRNNANGSSVIGALFRRERENAGPALQVSSDAAEELGVLAGAPTQLSVIALRREEAPVEELPTLETAALDAPVAVTATPLDEPSAEVADAPAASSGTAASTLSDIFASAPAAEAPSDTSTEGLTGAAAIAIAAAEAAASATTATPQPASAPTSNLDKPYIQIGIFSVEENAQRTNELLSSNGLVGTVLAQSSNGRPFWRVIVGPSPTSADRAEVLNKVKSLGFTDAYFVTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MXZ3</accession>
    <name>A0A1M5MXZ3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, AsnC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1084</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82085.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899816.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1084"/>
    <dbReference type="EnsemblBacteria" id="SHG82085">
        <property type="protein sequence ID" value="SHG82085"/>
        <property type="gene ID" value="SAMN05444003_1084"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000485">
        <property type="entry name" value="AsnC-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019888">
        <property type="entry name" value="Tscrpt_reg_AsnC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019887">
        <property type="entry name" value="Tscrpt_reg_AsnC/Lrp_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019885">
        <property type="entry name" value="Tscrpt_reg_HTH_AsnC-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01037">
        <property type="entry name" value="AsnC_trans_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13404">
        <property type="entry name" value="HTH_AsnC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00033">
        <property type="entry name" value="HTHASNC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00344">
        <property type="entry name" value="HTH_ASNC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00519">
        <property type="entry name" value="HTH_ASNC_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50956">
        <property type="entry name" value="HTH_ASNC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH asnC-type" evidence="4">
        <location>
            <begin position="3"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG82085.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="150" mass="16728" checksum="66C381B64EB37D00" modified="2017-03-15" version="1">MMLDNLDRAILRVLTQDATKTASALGRLLGLSQPATWRRIKRLQYAGVLTGRRLVLDAEKLGFGVTVFLGVKLATKGRVSLEDFERAVSAIPEIQTVEHVLGLYDYRLRVVARDLADFERVLRRRIMTLPGVGDVEANVLLSEERLSGPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N0S8</accession>
    <name>A0A1M5N0S8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Predicted dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1127</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83176.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899853.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1127"/>
    <dbReference type="EnsemblBacteria" id="SHG83176">
        <property type="protein sequence ID" value="SHG83176"/>
        <property type="gene ID" value="SAMN05444003_1127"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000683">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01408">
        <property type="entry name" value="GFO_IDH_MocA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GFO_IDH_MocA" evidence="1">
        <location>
            <begin position="3"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG83176.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="326" mass="35598" checksum="A86F6F9306A888BF" modified="2017-03-15" version="1">MAFRWGILGAGKFARQHMGPAIHAANGNSLVGLATSTASKAEPFEAFATGLEVFSDYDALLDSPDIDAVYIPLPNHLHVPWTIKALEAGKHVLCEKPIALQADQFDALINARDRSGKHAAEALMIAHHPQFTRAQELVQSGAIGKLRHVDAVFSYNNAGDTTNIRHDPAKGGGGLYDIGVYTCSAARLVSGEDPNEITLSRMEKENSVDVYAQFAAEFPSFSMSSMVSMRLHNRQEVVFHGDQGWLKLSCPFNANVYDVSELILETAVGSRIQERWPSVNQYVLQVENFAKTAQSGAEYPCPLEFSRGTQNMLDMIFEAHGPHPAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N1J3</accession>
    <name>A0A1M5N1J3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ATP-dependent RNA helicase SUPV3L1/SUV3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1116</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82863.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899842.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1116"/>
    <dbReference type="EnsemblBacteria" id="SHG82863">
        <property type="protein sequence ID" value="SHG82863"/>
        <property type="gene ID" value="SAMN05444003_1116"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0347">Helicase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase C-terminal" evidence="2">
        <location>
            <begin position="153"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="786"/>
            <end position="818"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="830"/>
            <end position="890"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG82863.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="890" mass="98756" checksum="78F2833CC434F554" modified="2017-03-15" version="1">MSTTRVTAVLGPTNTGKTHFAIERMLNHRTGVIGLPLRLLAREVYDRIVAKRGPSVVALVTGEERIVPPRAAYWVCTVEAMPEGMGCDFLAVDEIQLCSDAERGHVFTDRLLNARGVKETVFLGAETMRGAIAAMVPNVEFIKKERFSELTYSGSKKISRMPPRSAIVGFSVENVYAIAELLRRQKGGAAVVMGALSPRTRNAQVEMYQNGDVDYLVATDAIGMGLNLDIKHVAFSGLTKFDGRKMRHLFPEELGQIAGRAGRHTENGTFGVTGEAPPLDDEVAQAIVQHRFRPVKKLQWRNSDLQFGSVKRLVQTLEQHTQDEWLTRVRESDDLAALKALAQDELIVARAGDGPSVRLLWEVCRIPDFRGISPVEHATLLGKIFTDLHQDGHIDPNWFALKVARIDRTEGDIDTLSKRLAYIRTWTYVAQRQDWLRDVSHWREATRAVEDRLSDALHGALTQRFVDRRTSVLLRRLKQKESLLADVNENGEVTVEGEFVGKLDGFRFRMDKAGSPDEAKTLRQASVQALMPHWHLMADKFYNAPDTEIDFTEQGGLMWGENAVGKLVSGSEPLKPSVEVFVDEEAGDDVATKVQRRLQHFIDRKIAAGFEPLLGLKNDETLEGLAKGFAFRMVEGFGIIPRGEIADDVKALDQDARGTLRKHGIRFGQFTIFMPLLLKPAPTRLRLVLWSLAKNLQEFPESPPPGLVTVPAEKGAQPGYYAMAGYRAAGERAIRIDMLERLADMLRDQDTRGGFEATADMLSITGMTLEQFADLMQGLGYKAEKGERAKVKTTPTPAADTAPVGDEAKADEASIEPAEPEVEVFYTFTWGGRAQRQQRPQNDRPRGKGKPKGKGPKSNKPQSFSSKPKGEKKVDPDNPFAAALAGFKTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N1N0</accession>
    <name>A0A1M5N1N0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1141</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83464.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899864.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG83464">
        <property type="protein sequence ID" value="SHG83464"/>
        <property type="gene ID" value="SAMN05444003_1141"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG83464.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="166" mass="17322" checksum="2BA8A834488D4B39" modified="2017-03-15" version="1">MKHIAIALALTPSLVSADINLRFQEGAPKDRFVIENNLCSLSNVTLTIDLTTAPAGLIFDVTEQGAGVEVYQPVELEQGFAVLTEVTDGSQKLQLSLDEFRFGDELTISADLDDTLPNSSLGQIRVADSEIAGVTVSIETSGGIESALIDASSQAALSGAVGCPQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N2J7</accession>
    <name>A0A1M5N2J7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nitroreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1155</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83790.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900436.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG83790">
        <property type="protein sequence ID" value="SHG83790"/>
        <property type="gene ID" value="SAMN05444003_1155"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.109.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029479">
        <property type="entry name" value="Nitroreductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000415">
        <property type="entry name" value="Nitroreductase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00881">
        <property type="entry name" value="Nitroreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55469">
        <property type="entry name" value="SSF55469"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nitroreductase" evidence="1">
        <location>
            <begin position="37"/>
            <end position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG83790.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="229" mass="25783" checksum="7E152AD261BC44FB" modified="2017-03-15" version="1">MLDKRNMSYNAVPLPDHVSLSDEEAIARAAEYRTQLSKRHTVRDFTDRPVPRKIIEDCIMAAGSAPSGANHQPWFFAAISDQALKQRVREEAEIEERKFYARGTDDEWIKALEPIGTNAEKPHLTTAPWLIVVFAQKWGEFEDGTRYKNYYVPESVGIATGFLISALHEAGLSMLTHTPNPMKFLNAALDRPASEKPIMILTVGHAAEDATVPEVAKYKKPLDKIARFY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N8C1</accession>
    <name>A0A1M5N8C1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Histidinol-phosphatase</fullName>
            <ecNumber evidence="5">3.1.3.15</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Histidinol-phosphate phosphatase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_1238</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H2O + L-histidinol phosphate = L-histidinol + phosphate</text>
            <dbReference type="Rhea" id="RHEA:14465"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57699"/>
            <dbReference type="ChEBI" id="CHEBI:57980"/>
            <dbReference type="EC" id="3.1.3.15"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 8/9.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the inositol monophosphatase superfamily.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.15" evidence="5"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85727.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899948.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1238"/>
    <dbReference type="EnsemblBacteria" id="SHG85727">
        <property type="protein sequence ID" value="SHG85727"/>
        <property type="gene ID" value="SAMN05444003_1238"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00013"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004401">
        <property type="term" value="F:histidinol-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046855">
        <property type="term" value="P:inositol phosphate dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011809">
        <property type="entry name" value="His_9_proposed"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020583">
        <property type="entry name" value="Inositol_monoP_metal-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000760">
        <property type="entry name" value="Inositol_monophosphatase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00459">
        <property type="entry name" value="Inositol_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00377">
        <property type="entry name" value="IMPHPHTASES"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02067">
        <property type="entry name" value="his_9_HisN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00629">
        <property type="entry name" value="IMP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001216"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00033209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG85727.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="270" mass="28558" checksum="DC8A7B3DC6C7493A" modified="2017-03-15" version="1">MTTWNTETISDVIRVAHLAADAAKSETLKFFRGTNLSTENKDSGGFDPVTAADRAAEQAIRSVLAAERPQDGILGEEFGTSEGETGLTWVLDPIDGTRGYISGTPTWGTLISVADESEPKFGLIDQPYIGERFLGGLGVSSMTGPLGEKPLGTRETDALTDATLLTTFPEVGTDLERRAFEAVDRQVKLTRYGMDCYGYALLAAGQVDLVIEAGLQAYDIQAPIAVIEGAGGIVTNWEGQPAHEGGRVVAAANETLHAQALALVRSVVDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N8T5</accession>
    <name>A0A1M5N8T5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Permease of the drug/metabolite transporter (DMT) superfamily</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1232</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85599.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899942.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1232"/>
    <dbReference type="EnsemblBacteria" id="SHG85599">
        <property type="protein sequence ID" value="SHG85599"/>
        <property type="gene ID" value="SAMN05444003_1232"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="38"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="69"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="98"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="128"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="152"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="187"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="221"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="247"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="272"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="12"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="156"/>
            <end position="290"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG85599.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="311" mass="33199" checksum="36B14C93122342D9" modified="2017-03-15" version="1">MTTKEQAWLTAVLIGLGALWGLSQPLVKIAVAGQYEPLGMVFIQMLVATVVLGLVQFRRLRRLPIKASTVAIWLMIAFVGTIIPNSASYQALKSIPSGIYSVLIATIPMMSFPIALAMRNETYSSRRLLGLAAGFAGVLCIVIPDASLPERAMLAAIPLAMLGPLCYALEGNLVAKFGTAGMDPIQVMFGASALGAVITLPIAINAGQLTIPTMPLNQSDVALIFASVIHSFVYVVYVWMVGRAGPLFAAQVSYWVTGFGVLWAMLLLGERYAGWVWFAMVLMALGLTLVQPRRPLASNEPEGDTVGTPSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-06-02" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N8T9</accession>
    <name>A0A1M5N8T9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1250</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85964.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG85964">
        <property type="protein sequence ID" value="SHG85964"/>
        <property type="gene ID" value="SAMN05444003_1250"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="100"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="112"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG85964.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="152" mass="16715" checksum="8DAD6C9E085E4AB6" modified="2017-03-15" version="1">MDDHSSKVPVASHPLAANPDHLGLKPPRGCPREVPIWHCSWWGLPCRLRCRSRGGLLPHRFTVTLHARPSVLCGAFPGVAPAGRYPAPLLCGVRTFLDPRSSPVPRSSSHPRKCAPKPKWRLRQRGSVARGSRSLRDRCRQAGQSHEGGTAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NA21</accession>
    <name>A0A1M5NA21_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">50S ribosomal protein L33</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpmG</name>
        <name evidence="6" type="ORF">SAMN05444003_1244</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the bacterial ribosomal protein bL33 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85853.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_058315632.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1244"/>
    <dbReference type="EnsemblBacteria" id="SHG85853">
        <property type="protein sequence ID" value="SHG85853"/>
        <property type="gene ID" value="SAMN05444003_1244"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.28.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00294">
        <property type="entry name" value="Ribosomal_L33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038584">
        <property type="entry name" value="L33_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001705">
        <property type="entry name" value="Ribosomal_L33"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018264">
        <property type="entry name" value="Ribosomal_L33_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011332">
        <property type="entry name" value="Ribosomal_zn-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00471">
        <property type="entry name" value="Ribosomal_L33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57829">
        <property type="entry name" value="SSF57829"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01023">
        <property type="entry name" value="rpmG_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00582">
        <property type="entry name" value="RIBOSOMAL_L33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 6" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007596"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG85853.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="55" mass="6353" checksum="56A5B025EF53E1DF" modified="2017-03-15" version="1">MAKPTTIKIRLNSTAGTGHFYVTKKNARTMTEKMVVKKYDPVVRKHVEYKEGKIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NA34</accession>
    <name>A0A1M5NA34_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1272</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86368.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899977.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1272"/>
    <dbReference type="EnsemblBacteria" id="SHG86368">
        <property type="protein sequence ID" value="SHG86368"/>
        <property type="gene ID" value="SAMN05444003_1272"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021955">
        <property type="entry name" value="DUF3572"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12096">
        <property type="entry name" value="DUF3572"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG86368.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="92" mass="10326" checksum="DCCCC5B498E7DEEA" modified="2017-03-15" version="1">MSPEIAETIALQALAWLVGNDEVLPVFLGSTGTSEVELRQRATDHEFQASVLEFITMDDAWVKDFCDTINLAYEDPLRARYALPGAEQVHWT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NB40</accession>
    <name>A0A1M5NB40_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Predicted N-acetyltransferase YhbS</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1296</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86774.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899999.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1296"/>
    <dbReference type="EnsemblBacteria" id="SHG86774">
        <property type="protein sequence ID" value="SHG86774"/>
        <property type="gene ID" value="SAMN05444003_1296"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="4"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG86774.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="166" mass="18398" checksum="1ACBBAB79FE6DC59" modified="2017-03-15" version="1">MQATEYTLATEVADDWWEVEALYDLSFAPGRSALSSYRLRDDVDPILELCLTARDGDGVLAGAVRNWPVRVGEHQAVLLGPIAVHPTRQGEGLAALLMWRCIDLARSLEWERMFLVGDAPYYGRFGFKKLENVEMPPPTNPDRLLALDLVPGAWSGVSGTVERAID</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NB87</accession>
    <name>A0A1M5NB87_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Predicted Zn-dependent peptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_1303</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 3">Belongs to the peptidase M16 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86876.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900006.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1303"/>
    <dbReference type="EnsemblBacteria" id="SHG86876">
        <property type="protein sequence ID" value="SHG86876"/>
        <property type="gene ID" value="SAMN05444003_1303"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011249">
        <property type="entry name" value="Metalloenz_LuxS/M16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011765">
        <property type="entry name" value="Pept_M16_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001431">
        <property type="entry name" value="Pept_M16_Zn_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007863">
        <property type="entry name" value="Peptidase_M16_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00675">
        <property type="entry name" value="Peptidase_M16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05193">
        <property type="entry name" value="Peptidase_M16_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63411">
        <property type="entry name" value="SSF63411"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00143">
        <property type="entry name" value="INSULINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_M16" evidence="4">
        <location>
            <begin position="13"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M16_C" evidence="5">
        <location>
            <begin position="166"/>
            <end position="338"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU004447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00675"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF05193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG86876.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="421" mass="46046" checksum="A96AFEF35DBD1CCE" modified="2017-03-15" version="1">MTIQLHTLSNGFRIVTEAMPGLKSASVGVWVGAGGRHERVEQNGIAHFLEHMAFKGTKTRTPLQIAEAIEDVGGYINAYTSREMTAYYVRLLEDDVALGVDVIADILLNPIFDPNEIEVERGVILQEIGQALDTPDDIIFDWLQEAAYPDQALGRTILGPSERVQSFTRDDLSGFVGEHYGPNQMILAAAGAVDHDEIVKQAEALFGHLPSVKPTTLIQPARFGGAERRETKDLEQVHFALGIEGPDYRDPEIYTAQIYSSVMGGGMSSRLFQEVREHRGLCYMIFAQAGAYEDTGLTTIYAGTSSEQIAELVNVTADQMKRAADDMTDKEVDRARVQMKAGLLMGLESPSNRAERLARLLSIWGRIPSLEETIERIDDVTTAKLKAFAGKTTSQSGAAMALYGPAEAAPSLEELRARLAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NBA0</accession>
    <name>A0A1M5NBA0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Sulfate permease, SulP family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1298</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86810.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900001.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1298"/>
    <dbReference type="EnsemblBacteria" id="SHG86810">
        <property type="protein sequence ID" value="SHG86810"/>
        <property type="gene ID" value="SAMN05444003_1298"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015116">
        <property type="term" value="F:sulfate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.750.24">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011547">
        <property type="entry name" value="SLC26A/SulP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002645">
        <property type="entry name" value="STAS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036513">
        <property type="entry name" value="STAS_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01740">
        <property type="entry name" value="STAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00916">
        <property type="entry name" value="Sulfate_transp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52091">
        <property type="entry name" value="SSF52091"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50801">
        <property type="entry name" value="STAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="31"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="57"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="102"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="132"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="171"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="201"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="261"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="337"/>
            <end position="357"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="363"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="394"/>
            <end position="425"/>
        </location>
    </feature>
    <feature type="domain" description="STAS" evidence="2">
        <location>
            <begin position="432"/>
            <end position="521"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG86810.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="549" mass="57972" checksum="6959E317840E1890" modified="2017-03-15" version="1">MSTSILARFADSLAIADPNTPITSTRIRTEVLSGLTVALALVPEAVAFAFVAGVHPLVGLYAAFMVGLITAVIGGRPGMISGATGALAVVMVSLVAVHGVEYLFATVILMGLIQIFVGIMRWGKFIRLVPHPVMLGFVNGLAIVIFLAQLGQFQVPGTAESGGHGIPHGEWLSGMPLILMLCLVALTMAIIWVWPRITNVIPAPLAGIGIVAGIVIAFGLDVPRVGDLASIEGGLPQFHNPFGTGEGLYGTPLAPFTLETFWIILPYALILSAIGLIESLLTLNLVGEMTNQRGGASQECIAQGFANTATGFFAGMGGCAMIGQSMINVKSGGRTRIAGIAAALFLLAFIMFASGLIEQIPLAALVGVMFMVVIGTFAWNSLRILRKVPHMDAFVIILVTVVTVATDLATAVVVGVVVSALAYSWNNAKRIYAETHETPEGAKVYHIQGPLFFGSAEGFAELFQIKDDPSLVIIDFQNSRVVDQSALQAIEAIAGKYEAAGKRIQLRHLSHDCHQLLTRAGHLIVDSDDDPDYEVAVDYGVRTGIIGGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NBW0</accession>
    <name>A0A1M5NBW0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1308</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86942.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900010.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1308"/>
    <dbReference type="EnsemblBacteria" id="SHG86942">
        <property type="protein sequence ID" value="SHG86942"/>
        <property type="gene ID" value="SAMN05444003_1308"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG86942.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="68" mass="7537" checksum="CB76C2E2DD8FC81E" modified="2017-03-15" version="1">MTIKVEHELHERRKGRNVGLGLILVAFIGIVFGLTVVKVTQLGEAQQFERFDHVARPQIIPAEDGGSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NCU6</accession>
    <name>A0A1M5NCU6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Formate--tetrahydrofolate ligase</fullName>
            <ecNumber evidence="6">6.3.4.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Formyltetrahydrofolate synthetase</fullName>
            <shortName evidence="6">FHS</shortName>
            <shortName evidence="6">FTHFS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">fhs</name>
        <name evidence="7" type="ORF">SAMN05444003_1337</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>(6S)-5,6,7,8-tetrahydrofolate + ATP + formate = (6S)-10-formyltetrahydrofolate + ADP + phosphate</text>
            <dbReference type="Rhea" id="RHEA:20221"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="ChEBI" id="CHEBI:57454"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.4.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 6">One-carbon metabolism; tetrahydrofolate interconversion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the formate--tetrahydrofolate ligase family.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.3" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87394.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900452.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1337"/>
    <dbReference type="EnsemblBacteria" id="SHG87394">
        <property type="protein sequence ID" value="SHG87394"/>
        <property type="gene ID" value="SAMN05444003_1337"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00193"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004329">
        <property type="term" value="F:formate-tetrahydrofolate ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035999">
        <property type="term" value="P:tetrahydrofolate interconversion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00477">
        <property type="entry name" value="FTHFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01543">
        <property type="entry name" value="FTHFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000559">
        <property type="entry name" value="Formate_THF_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020628">
        <property type="entry name" value="Formate_THF_ligase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01268">
        <property type="entry name" value="FTHFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00721">
        <property type="entry name" value="FTHFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00722">
        <property type="entry name" value="FTHFS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 6 7" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2 6" id="KW-0554">One-carbon metabolism</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="67"/>
            <end position="74"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01543"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG87394.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="558" mass="59860" checksum="E78E40209210BE3A" modified="2017-03-15" version="1">MSYKSDIEIAREAKKQPIQEIGAKLGIGSDDLLPFGHDKAKVSQDFINSVQGNEDGKLILVTAINPTPAGEGKTTTTVGLGDGLNRIGKKAAVCIREASLGPNFGMKGGAAGGGYAQIVPMEDMNLHFTGDFHAITSAHSLLSAMIDNHIYWGNEQEIDIRRVQWRRVVDMNDRALRQITCSLGGVANGFPREAGFDITVASEVMAILCLAKDLKDLQQRLGDMIVAYRRDRSPVFCRDIKADGAMTVLLKDAMQPNLVQTLENNPAFVHGGPFANIAHGCNSVIATTTALKLADYVVTEAGFGADLGAEKFMNIKCRKAGLAPDCVVLVATIRAMKMNGGVAKADLGSENVDAVNEGCANLGRHIGNLKSFGVPVVVAINHFVTDTDAEVQAVKDYVATQGAEAIVSQHWEHGSAGSEALATRVAEIADSGTSQFAPIYKDELPLFEKIERIAKSIYRADEVLADKKIRDQLKLWEDQGYGNLPVCMAKTQYSFSTDPNLRGAPTGHSVPIREVRLSAGAGFVVVVCGEIMTMPGLPRTPAAENIHLNDDGQIEGLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NFL0</accession>
    <name>A0A1M5NFL0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Predicted enzyme of the cupin superfamily</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1357</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87753.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900048.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1357"/>
    <dbReference type="EnsemblBacteria" id="SHG87753">
        <property type="protein sequence ID" value="SHG87753"/>
        <property type="gene ID" value="SAMN05444003_1357"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008579">
        <property type="entry name" value="UGlyAH_Cupin_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05899">
        <property type="entry name" value="Cupin_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cupin_3" evidence="1">
        <location>
            <begin position="302"/>
            <end position="338"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG87753.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="364" mass="39815" checksum="5F6803B664253621" modified="2017-03-15" version="1">MTNNPIRAEVLLPTGELRNDLPFYTKVLGMRMDTIFPADDPTTATFSGHGLNIRIQKGAPVQPGVLRILTDDVAGFADGQTELFAPNGTKVEIAPLTPVAETPAVAHEFQVRRLRDEAPWIIGRAGMHYRDLISSRLGGAIIASHIRIPDGGPVPDMVHYHTVGFQLIFCYRGWVDLLYEDQGEMMRLHAGCCVTQPPGIRHRVVYASPDIEVIEVGVPAEHVTTIDHEMELPNGPANPDREWDGQKFVHHVKDKAVWQPFRIPGFKARDTGINAGTKGVAGIQVAQFERGETAKTVHDADIHFTFVMEGGMTLRADGQAPSTLEAGDAFVIPPGLATQYTECSDDLELLEVALRGDFGSEVVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NFM1</accession>
    <name>A0A1M5NFM1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Methylmalonyl-CoA epimerase /ethylmalonyl-CoA epimerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1392</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the methylmalonyl-CoA epimerase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88384.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900082.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1392"/>
    <dbReference type="EnsemblBacteria" id="SHG88384">
        <property type="protein sequence ID" value="SHG88384"/>
        <property type="gene ID" value="SAMN05444003_1392"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd07249">
        <property type="entry name" value="MMCE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017515">
        <property type="entry name" value="MeMalonyl-CoA_epimerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03081">
        <property type="entry name" value="metmalonyl_epim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="2">
        <location>
            <begin position="4"/>
            <end position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009308"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG88384.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="134" mass="14282" checksum="2850F49AFFE6F094" modified="2017-03-15" version="1">MIGRLNHVAIAVPDLEAASAQYRGALGADVGAPQDEPDHGVTVVFINLPNTKIELLYPLGEDSPIANFLDKNPSGGIHHICYEVDDILAARDKLKAEGARVLGSGEPKIGAHGKPVLFLHPKDFNGCLVELEQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NGP9</accession>
    <name>A0A1M5NGP9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Xanthine dehydrogenase small subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1407</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88672.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900093.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1407"/>
    <dbReference type="EnsemblBacteria" id="SHG88672">
        <property type="protein sequence ID" value="SHG88672"/>
        <property type="gene ID" value="SAMN05444003_1407"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004854">
        <property type="term" value="F:xanthine dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004855">
        <property type="term" value="F:xanthine oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002888">
        <property type="entry name" value="2Fe-2S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036884">
        <property type="entry name" value="2Fe-2S-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006058">
        <property type="entry name" value="2Fe2S_fd_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005107">
        <property type="entry name" value="CO_DH_flav_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036683">
        <property type="entry name" value="CO_DH_flav_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016166">
        <property type="entry name" value="FAD-bd_PCMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002346">
        <property type="entry name" value="Mopterin_DH_FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012175">
        <property type="entry name" value="Xanth_DH_ssu_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014307">
        <property type="entry name" value="Xanthine_DH_ssu"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03450">
        <property type="entry name" value="CO_deh_flav_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00941">
        <property type="entry name" value="FAD_binding_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01799">
        <property type="entry name" value="Fer2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036557">
        <property type="entry name" value="XdhA_RC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01092">
        <property type="entry name" value="CO_deh_flav_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47741">
        <property type="entry name" value="SSF47741"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55447">
        <property type="entry name" value="SSF55447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02963">
        <property type="entry name" value="xanthine_xdhA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00197">
        <property type="entry name" value="2FE2S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51387">
        <property type="entry name" value="FAD_PCMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="domain" description="FAD-binding PCMH-type" evidence="3">
        <location>
            <begin position="162"/>
            <end position="335"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG88672.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="451" mass="48732" checksum="FC94C524350E77EF" modified="2017-03-15" version="1">MTVTFLLNGETVEVDAPPTRTLLEWLREDEDLCGTKEGCNEGDCGACTVMVTDDQGARALNACILFLPQLHGKAVRTVEGLSGPKGELHPVQKAMISHHGSQCGFCTPGFVMSMAVAHRNGATDHDDQLAGNLCRCTGYAPIIRAAQATQEQDVPEWVEDQPIDVAPQAFAPHTEDELAAWYEAHPEGTLIAGATDVGLLVTKQFRDLGEVAFLNKCAELKQITRSETEFTFGAGVTMTDVLEAVREDYPSYAEMIRRYGSVQVRNAATIGGNIANGSPIGDNPPALIALGATLKLRKGKARREMPIEDFFIDYGKQNRTLGEFVTGARVPLGQDALRCYKLSKRFDQDISAVCGCFNVRVEAGSVAEARIAFGGMAGIPKRASAVEAALVSKPWDRDTVEAAVSCFKDDFTPLTDMRASAAYRLEAAENMLRRYFAESSGASVNVLEVSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NKN5</accession>
    <name>A0A1M5NKN5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Succinate--CoA ligase [ADP-forming] subunit beta</fullName>
            <ecNumber evidence="6">6.2.1.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Succinyl-CoA synthetase subunit beta</fullName>
            <shortName evidence="6">SCS-beta</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">sucC</name>
        <name evidence="9" type="ORF">SAMN05444003_1477</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>ATP + CoA + succinate = ADP + phosphate + succinyl-CoA</text>
            <dbReference type="Rhea" id="RHEA:17661"/>
            <dbReference type="ChEBI" id="CHEBI:30031"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57292"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.2.1.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="6">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="6">Carbohydrate metabolism; tricarboxylic acid cycle; succinate from succinyl-CoA (ligase route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Heterotetramer of two alpha and two beta subunits.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the succinate/malate CoA ligase beta subunit family.</text>
    </comment>
    <dbReference type="EC" id="6.2.1.5" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90174.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900156.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1477"/>
    <dbReference type="EnsemblBacteria" id="SHG90174">
        <property type="protein sequence ID" value="SHG90174"/>
        <property type="gene ID" value="SAMN05444003_1477"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00223">
        <property type="reaction ID" value="UER00999"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004775">
        <property type="term" value="F:succinate-CoA ligase (ADP-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.261">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00558">
        <property type="entry name" value="Succ_CoA_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013650">
        <property type="entry name" value="ATP-grasp_succ-CoA_synth-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005811">
        <property type="entry name" value="CoA_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017866">
        <property type="entry name" value="Succ-CoA_synthase_bsu_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005809">
        <property type="entry name" value="Succ_CoA_synthase_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016102">
        <property type="entry name" value="Succinyl-CoA_synth-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11815">
        <property type="entry name" value="PTHR11815"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08442">
        <property type="entry name" value="ATP-grasp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00549">
        <property type="entry name" value="Ligase_CoA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001554">
        <property type="entry name" value="SucCS_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52210">
        <property type="entry name" value="SSF52210"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01016">
        <property type="entry name" value="sucCoAbeta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01217">
        <property type="entry name" value="SUCCINYL_COA_LIG_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 6" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 6" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="domain" description="ATP-grasp_2" evidence="8">
        <location>
            <begin position="2"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="domain" description="Ligase_CoA" evidence="7">
        <location>
            <begin position="272"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding; shared with subunit alpha" evidence="6">
        <location>
            <begin position="331"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="46"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="53"/>
            <end position="55"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="109"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="112"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="117"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="209"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="223"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="274"/>
        </location>
        <ligand>
            <name>substrate</name>
            <note>ligand shared with subunit alpha</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00558"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00549"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF08442"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG90174.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="397" mass="42412" checksum="1B154B5C1626BFBC" modified="2017-03-15" version="1">MNIHEYQAKALLRDFGAPVSDGRAVLKAEDAKTAAGELDGPLWVVKAQIHAGGRGKGKFKEADAGEAGGVRLTKSVEEAAEEAKKMLGRTLVTHQTGPAGKQVNRVYIEDGSGIETEMYLALLVDRATSRVGFVCSTEGGMDIEEVAASTPEKILNFTVDPATGYQPYHGRRVAFALGLEGQQVKQCVKLMGLLYKAFISKDMEMLEINPLIVTDKGDLKVLDAKVSFDGNAVYRHADVAALRDETEEDPKELEASKFDLNYIALDGEIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGATKEKVTEAFKIITSDPNVKGILVNIFGGIMRCDVIAEGVVEAVKEVGLKVPLVVRLEGTNVQQGKDIINNSDVDVIAADDLKDGAQKIVKAVKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NLK0</accession>
    <name>A0A1M5NLK0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Zinc transporter, ZIP family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1461</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89813.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900143.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1461"/>
    <dbReference type="EnsemblBacteria" id="SHG89813">
        <property type="protein sequence ID" value="SHG89813"/>
        <property type="gene ID" value="SAMN05444003_1461"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="39"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="66"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="98"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="156"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="186"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="215"/>
            <end position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG89813.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="237" mass="24167" checksum="AAC34C85FEAA8070" modified="2017-03-15" version="1">MPALSYALLLATLAGLAIPLGAILARYAHISNRQIADQVMHTIVAFGGGALLSAIALVLVPAGVEALSPLVAVSLFLGGGVVFFIVDKMLERKGGGGALMLAMLLDFLPEALALGALLATEAATAKLLALMIFLQNVPEGFSAFREMFKPEKSNGGKIIMTFFALALLGPLCAGLGLVFLSDAPETLGAIMMFAAGGILYLLFQDIAPESHISGTGLPALGAVAGFALGLAGEMVIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NNG1</accession>
    <name>A0A1M5NNG1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, HxlR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1499</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90719.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900468.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG90719">
        <property type="protein sequence ID" value="SHG90719"/>
        <property type="gene ID" value="SAMN05444003_1499"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002577">
        <property type="entry name" value="HTH_HxlR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036527">
        <property type="entry name" value="SCP2_sterol-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01638">
        <property type="entry name" value="HxlR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55718">
        <property type="entry name" value="SSF55718"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51118">
        <property type="entry name" value="HTH_HXLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH hxlR-type" evidence="1">
        <location>
            <begin position="10"/>
            <end position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG90719.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="235" mass="26386" checksum="1AB19342D5DCE1A1" modified="2017-03-15" version="1">MNVKPYGLLCPISRASQLLEPRWTIPILTEIWAGATRFNTLRRRLGSISPGVLSRRLSEMEHNGLVERVEDKATGAVDYIRTPKSEALEPVIKALGVWAQQNIEAEVALAGTLASPMMWKCQSVLQVDALPDKRSVIRFHFRDEPTDYDTFWFLAQRGTPPELCVHDPDLDVDLYVETTLVAMGGIIMGRTTLAKETELGSFFLSGDPRLARTFQNWLPPAPYAKVPDILPLRLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NSC1</accession>
    <name>A0A1M5NSC1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">3-hydroxybutyryl-CoA dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1573</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG92494.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900242.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1573"/>
    <dbReference type="EnsemblBacteria" id="SHG92494">
        <property type="protein sequence ID" value="SHG92494"/>
        <property type="gene ID" value="SAMN05444003_1573"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002539">
        <property type="entry name" value="MaoC-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01575">
        <property type="entry name" value="MaoC_dehydratas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MaoC-like" evidence="1">
        <location>
            <begin position="23"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01575"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG92494.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="147" mass="16104" checksum="8BF8906CDEAC1C20" modified="2017-03-15" version="1">MLDNAPRGTIVIEDIEIGMVRSLRKEVTDRDIELFAEVSTDRNPVHLDESYAQDTIFGGRIAHGMLTAGLISAVIGEQLPGHGTVYMGQSLKFLAPVRPGDVVLAEVEVIDIDYPKRRVRMETRCLVDGKKVLLGEATVLAPSGKFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NSY1</accession>
    <name>A0A1M5NSY1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1566</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG92309.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900235.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG92309">
        <property type="protein sequence ID" value="SHG92309"/>
        <property type="gene ID" value="SAMN05444003_1566"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG92309.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="101" mass="11271" checksum="A0DEA5A14B6E82DB" modified="2017-03-15" version="1">MHPPFTFPNHPVGPTRTSPTPEKRVVRRSKPEALRLIPAAPSVPPVPLVVPTDNYPAPAENAVQPKDRLQVVPIPRNTLRDRVGRFLIRIGQRMILDNHPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NSZ8</accession>
    <name>A0A1M5NSZ8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">ATP synthase subunit beta</fullName>
            <ecNumber evidence="11">7.1.2.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">ATP synthase F1 sector subunit beta</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">F-ATPase subunit beta</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">atpD</name>
        <name evidence="13" type="ORF">SAMN05444003_1583</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>ATP + 4 H(+)(in) + H2O = ADP + 5 H(+)(out) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:57720"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="7.1.2.2"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11">Cell membrane</location>
            <topology evidence="11">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 11">Belongs to the ATPase alpha/beta chains family.</text>
    </comment>
    <dbReference type="EC" id="7.1.2.2" evidence="11"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG92744.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900251.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1583"/>
    <dbReference type="EnsemblBacteria" id="SHG92744">
        <property type="protein sequence ID" value="SHG92744"/>
        <property type="gene ID" value="SAMN05444003_1583"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045261">
        <property type="term" value="C:proton-transporting ATP synthase complex, catalytic core F(1)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046961">
        <property type="term" value="F:proton-transporting ATPase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1140.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01347">
        <property type="entry name" value="ATP_synth_beta_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005722">
        <property type="entry name" value="ATP_synth_F1_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020003">
        <property type="entry name" value="ATPase_a/bsu_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004100">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036121">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000194">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_nucl-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024034">
        <property type="entry name" value="ATPase_F1/V1_b/a_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00006">
        <property type="entry name" value="ATP-synt_ab"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02874">
        <property type="entry name" value="ATP-synt_ab_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50615">
        <property type="entry name" value="SSF50615"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01039">
        <property type="entry name" value="atpD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00152">
        <property type="entry name" value="ATPASE_ALPHA_BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 11" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="5 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9 11" id="KW-0139">CF(1)</keyword>
    <keyword evidence="4 11" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="7 11" id="KW-0406">Ion transport</keyword>
    <keyword evidence="8 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 11" id="KW-1278">Translocase</keyword>
    <keyword evidence="2 11" id="KW-0813">Transport</keyword>
    <feature type="domain" description="AAA" evidence="12">
        <location>
            <begin position="143"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="151"/>
            <end position="158"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHG92744.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="474" mass="50532" checksum="2B996F8E3A856828" modified="2017-03-15" version="1">MANAKGKITQIIGAVVDVQFDDHLPEILNALTTDNNGKTLTLEVAQHLGENTVRAIAMDATEGLVRGQDVTDQGTTISVPVGDATLGRIMNVVGEPVDEKGPVETKETRSIHGDAPEFEAQSTASEILVTGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKVHSGYSVFAGVGERTREGNDLYYEFIESGVINAEDLTKSKVALVYGQMNEPPGARMRVALSGLTMAEQFRDQSGTDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGAMQERITSTKNGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLNRAISELGIYPAVDPLDSTSRLLDPAVIGEEHYSVASDVQQILQRYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFDVAQVFTGSPGVQVPLEDTIASFKAVVAGEYDHLPEGAFYMVGGIDEVIAKAEKMAADAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PJM2</accession>
    <name>A0A1M5PJM2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Tryptophan synthase beta chain</fullName>
            <ecNumber evidence="11">4.2.1.20</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">trpB</name>
        <name evidence="13" type="ORF">SAMN05444003_1684</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate + L-serine = D-glyceraldehyde 3-phosphate + H2O + L-tryptophan</text>
            <dbReference type="Rhea" id="RHEA:10532"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:57912"/>
            <dbReference type="ChEBI" id="CHEBI:58866"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="EC" id="4.2.1.20"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 11">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3 11">Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 5/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5 11">Tetramer of two alpha and two beta chains.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 11">Belongs to the TrpB family.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.20" evidence="11"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02026.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900503.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1684"/>
    <dbReference type="EnsemblBacteria" id="SHH02026">
        <property type="protein sequence ID" value="SHH02026"/>
        <property type="gene ID" value="SAMN05444003_1684"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00035">
        <property type="reaction ID" value="UER00044"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004834">
        <property type="term" value="F:tryptophan synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06446">
        <property type="entry name" value="Trp-synth_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00133">
        <property type="entry name" value="Trp_synth_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="PLP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006653">
        <property type="entry name" value="Trp_synth_b_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006654">
        <property type="entry name" value="Trp_synth_beta"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023026">
        <property type="entry name" value="Trp_synth_beta/beta-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="Trypto_synt_PLP_dependent"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001413">
        <property type="entry name" value="Trp_syn_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="SSF53686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00263">
        <property type="entry name" value="trpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00168">
        <property type="entry name" value="TRP_SYNTHASE_BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 11" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9 11" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="10 11" id="KW-0456">Lyase</keyword>
    <keyword evidence="8 11" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 11" id="KW-0822">Tryptophan biosynthesis</keyword>
    <feature type="domain" description="PALP" evidence="12">
        <location>
            <begin position="63"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="11">
        <location>
            <position position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000003"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022822"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHH02026.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="410" mass="45020" checksum="422CBE77239E19A0" modified="2017-03-15" version="1">MAQDLFNSFMTGPDEKGRFGDFGGRFVSETLMPLILELEAQYEKAKTDDSFWAEMHDLWTHYVGRPSPLYYAERLTEHLGGAKIYLKRDELNHTGAHKINNVLGQIILARRMGKTRIIAETGAGQHGVATATVCAKFGLKCIVYMGAHDVERQAPNVFRMRLLGTEVVPVTSGRGTLKDAMNDALRDWVTNVRDTFYCIGTVAGPHPYPAMVRDFQSIIGKEAKEQMMAAEDRLPDTIIAAIGGGSNAMGLFYPFLDDKDVGIIGVEAGGKGVNEKMEHCASLTGGRPGVLHGNRTYLLQDDDGQILEGFSISAGLDYPGIGPEHAWLHDIGRAQYVSITDVEALEAFQLCCQQEGIIPALEPSHALAHVMKIAPDLPKDHIICMNMCGRGDKDIFTVARALDFDMGEFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PJM3</accession>
    <name>A0A1M5PJM3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, MarR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1667</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH01699.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900490.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1667"/>
    <dbReference type="EnsemblBacteria" id="SHH01699">
        <property type="protein sequence ID" value="SHH01699"/>
        <property type="gene ID" value="SAMN05444003_1667"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12802">
        <property type="entry name" value="MarR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00598">
        <property type="entry name" value="HTHMARR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH01699.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="150" mass="16667" checksum="CACA53FE585D0BE9" modified="2017-03-15" version="1">MKPEDFGPIFAFFNEIGIIEQLSRTQLEAHLPEGLIAPHFGVLNHLVRLGDGRTPLQIAKAFQVPKTSMSHTLAVLQKRGLIDMATNPEDARSKIIAITQAGRDVREAAIVSLIPDFQRVLGQFDPENFKAALPFLIKLRETMDKARDAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PP05</accession>
    <name>A0A1M5PP05_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Carbohydrate ABC transporter membrane protein 2, CUT1 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1749</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03339.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900556.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1749"/>
    <dbReference type="EnsemblBacteria" id="SHH03339">
        <property type="protein sequence ID" value="SHH03339"/>
        <property type="gene ID" value="SAMN05444003_1749"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="76"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="111"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="149"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="189"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="245"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="77"/>
            <end position="268"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH03339.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="282" mass="31779" checksum="0240C12E8DF19D5F" modified="2017-03-15" version="1">MFPRPIEQQSRSVQVGYQALLPIALILWLLPLIAVMIFSIKPDSDFVQGNFWGLPSSFEFFNNYGKVFFESDMPRYLWNSVVITVPTVIGTVALACMTGFALGVYRFKGNLFIFFMFIAGNFVPFQILMVPVRDLTVSMNLYDTKLGLILFHIAFQTGFCTLFMRNFIRALPFPLIEAARVEGVAEWRIFWFVVMPLMKPAIAALSVLIFTFIWNDYFWAVVLTQGPDAQPVTAGITAFNSQFRAAYHLMSAGSIVAALPPVAMFFLMQKHFIAGLTLGAVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PQ57</accession>
    <name>A0A1M5PQ57_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">2-dehydro-3-deoxygalactonokinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1752</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03413.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900558.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1752"/>
    <dbReference type="EnsemblBacteria" id="SHH03413">
        <property type="protein sequence ID" value="SHH03413"/>
        <property type="gene ID" value="SAMN05444003_1752"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008671">
        <property type="term" value="F:2-dehydro-3-deoxygalactonokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034194">
        <property type="term" value="P:D-galactonate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.310">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007729">
        <property type="entry name" value="DGOK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042257">
        <property type="entry name" value="DGOK_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042258">
        <property type="entry name" value="DGOK_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05035">
        <property type="entry name" value="DGOK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH03413.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="296" mass="31767" checksum="3B839A037FD54BF9" modified="2017-03-15" version="1">MSKVDWIAADWGTSNLRVWGMSQSGTIVESAESDCGMGKLSRTDYEPALKALVHPWVTGPTTVIACGMVGSRQGWTEATYATVPCETSPSAFFAPDVADPNLDVRIIPGIRQMDPADVMRGEETQIAGFLALNPNWDGVICLPGTHTKWVHISANEVVSFQTFMTGEMFSLLSKNSVLRHSVGNGLDDVGFKRGLDEAMARPERLAARLFSLRAEGLLSEQDPDIATGRLSGLLIGAELAGAKPYWLGQQVAVLGAGPLAKLYVDALATQSVPAIQVQAERATLAGLTAAYRKYKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PSI2</accession>
    <name>A0A1M5PSI2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Peptide deformylase</fullName>
            <shortName evidence="2">PDF</shortName>
            <ecNumber evidence="2">3.5.1.88</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Polypeptide deformylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">def</name>
        <name evidence="3" type="ORF">SAMN05444003_1795</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>H2O + N-terminal N-formyl-L-methionyl-[peptide] = formate + N-terminal L-methionyl-[peptide]</text>
            <dbReference type="Rhea" id="RHEA:24420"/>
            <dbReference type="Rhea" id="RHEA-COMP:10639"/>
            <dbReference type="Rhea" id="RHEA-COMP:10640"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:49298"/>
            <dbReference type="ChEBI" id="CHEBI:64731"/>
            <dbReference type="EC" id="3.5.1.88"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the polypeptide deformylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.88" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900595.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1795"/>
    <dbReference type="EnsemblBacteria" id="SHH04223">
        <property type="protein sequence ID" value="SHH04223"/>
        <property type="gene ID" value="SAMN05444003_1795"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042586">
        <property type="term" value="F:peptide deformylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00487">
        <property type="entry name" value="Pep_deformylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.45.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00163">
        <property type="entry name" value="Pep_deformylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023635">
        <property type="entry name" value="Peptide_deformylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036821">
        <property type="entry name" value="Peptide_deformylase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10458">
        <property type="entry name" value="PTHR10458"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01327">
        <property type="entry name" value="Pep_deformylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004749">
        <property type="entry name" value="Pep_def"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01576">
        <property type="entry name" value="PDEFORMYLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56420">
        <property type="entry name" value="SSF56420"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00079">
        <property type="entry name" value="pept_deformyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH04223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="162" mass="18400" checksum="D691C342CF09F480" modified="2017-03-15" version="1">MRNIVPWPNKVLRTPAETVGEITEEIRAIWDEMIEVMDAMPGYGLAAVQLGVPLRLAVVDASVERGQAIRLANPEILTTRPELRAHAEASPNLPGVHATLKRPAKVSVRFLNEDGVWDRKEFDGLWSTSVQHQIDHLEGKMFFDRLSRTRREMLLKKAQKQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PTZ3</accession>
    <name>A0A1M5PTZ3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">1-acyl-sn-glycerol-3-phosphate acyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1849</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05315.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1849"/>
    <dbReference type="EnsemblBacteria" id="SHH05315">
        <property type="protein sequence ID" value="SHH05315"/>
        <property type="gene ID" value="SAMN05444003_1849"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002123">
        <property type="entry name" value="Plipid/glycerol_acylTrfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01553">
        <property type="entry name" value="Acyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00563">
        <property type="entry name" value="PlsC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="domain" description="PlsC" evidence="2">
        <location>
            <begin position="72"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH05315.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="243" mass="26938" checksum="2D5FF2D9615038DC" modified="2017-03-15" version="1">MYVIQLIRSIIFNASMYLAMLVLGIVYLPYALLTRDGALKACHTYCRYVRWSASWMIGLKTEVRGEPPIGEVMIAAKHQSFLDVLMIFGSIPRGKFIMKSILKYAPIIGQYGLRIGCIPVDRGKRGQAIRKMLADVEAGRAQGGQLIIYPQGTRIPPGVKAPYKVGTAALYKELQQPCVPVAANVGVFWPKRGFYRKPGLAVVEFLEPIQPGLTTAEYLEVLEERIETRSDALAAEAGFKADE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PUM8</accession>
    <name>A0A1M5PUM8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Multidrug efflux pump subunit AcrB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1862</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05575.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900653.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1862"/>
    <dbReference type="EnsemblBacteria" id="SHH05575">
        <property type="protein sequence ID" value="SHH05575"/>
        <property type="gene ID" value="SAMN05444003_1862"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2090.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027463">
        <property type="entry name" value="AcrB_DN_DC_subdom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001036">
        <property type="entry name" value="Acrflvin-R"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32063">
        <property type="entry name" value="PTHR32063"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00873">
        <property type="entry name" value="ACR_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00702">
        <property type="entry name" value="ACRIFLAVINRP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82714">
        <property type="entry name" value="SSF82714"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="332"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="358"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="384"/>
            <end position="404"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="434"/>
            <end position="456"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="462"/>
            <end position="481"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="526"/>
            <end position="547"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="875"/>
            <end position="894"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="901"/>
            <end position="921"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="927"/>
            <end position="951"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="972"/>
            <end position="991"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="1003"/>
            <end position="1028"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="1048"/>
            <end position="1073"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="1093"/>
            <end position="1122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH05575.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="1126" mass="121715" checksum="30FE701025BD1219" modified="2017-03-15" version="1">MARTFRTDGIFSYFTRHKTIANLFLILMLGAGIIAFPNMRAQFFPDVVVDDVDISVIWDGAGAEDVDAAIVQVLEPVLLSVEGVTESRSNSFEGRANITLEFRPGTDIEKAREDVQFALDNTRNLPSGAEDPEIRSGGWSDRVTDVVITGPVGIEQLGRFADELVTRLFAEGVTQTVIRGVAAPSTVVEVPSTSLIKYDIGLAEIASRIAAEVNADPAGDVSGNTRVRTGVAKRSADDIESIVLRSNPDGSKLLIGDVARVVTEGVDRDRAYYVGENPAVQMRVNRDAAGDAIRLQATVEEVAQELQATLPAGTKVELVNTLADAISGRLNILLDNGLMGLGLVMMLLFLFLNARTAFWVAAGIPAAMFAAIGMMYLAGVTINMISLFALIITLGIVVDDAIVVGEHADFRVRQLGEDPVVAAERAAQRMFSPVFSATLTTIIAFFGLVAIGGRFGSLIADIPFTVIIVLIASLMECFLILPHHLAKSMVHSKKDHWYDWPSRTFNRGFDWFRRTVFRPFMAGVIWARYPVVAGVILILASQIAVFVRGDVQWRFFNAPEQGQVTGNFAMLPTATREDSLEMMREMQRATEELGAQYEERYGTNPLEFVVAEVGGNAGRAIAGSEQKDTDQLGSISISLIDADSRPYSSFAFVAELQESVRQHPLTETVSFRSWGRGPGGDSLAIQLFGASTDTLKAAAEELKQELAPFGEISGLEDSLSYDKEELLLELTPQGQALGLDIDGLGNVLRARLGGIEAATYPDGPRSAAIRVELPDDELSADFLDRMLIRTSSGAYVPLGDVVTVQSRIGFSTVQRENGIALVSVTGDLDDEDADRAVEIQRIINETILPELETSYGIESQLGGQSEQERQFLADARTGLVLVLAGIFLSLAWIFGSWTRPLVVMAIIPFGLVGTIYGHNVWNIPMSLFTVVGLIGMVGIVINDSIVLVTTIDEYAEERGLFPAIIDGASDRLRPVLLTTLTTVLGLMPLLYEGSNQAEFLKPTVVTLVYGLGFGMVLVLFVVPSLMALQFDVSRQFRTVRRAMRGRRLAMTLPATLGLLAVVGLFAAIVGPILVTGAPLPALAAALPMLYGGIWPAFAVYIAAVAVILIAIYVISSLGFAIARRRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PVV2</accession>
    <name>A0A1M5PVV2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">MJ0042 family finger-like domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1852</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05383.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1852"/>
    <dbReference type="EnsemblBacteria" id="SHH05383">
        <property type="protein sequence ID" value="SHH05383"/>
        <property type="gene ID" value="SAMN05444003_1852"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011723">
        <property type="entry name" value="Znf/thioredoxin_put"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13717">
        <property type="entry name" value="zinc_ribbon_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02098">
        <property type="entry name" value="MJ0042_CXXC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="206"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="domain" description="Znf/thioredoxin_put" evidence="3">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="39"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="264"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="64"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="99"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="270"/>
            <end position="295"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH05383.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="295" mass="32059" checksum="BE443FEEE6BDD47A" modified="2017-03-15" version="1">MRLVCPNCGAQYEVADDVIPESGRDVQCSNCGHTWFEQKEGAPVQDEVEMPVPAHQELEPEPQPEPEPAPEPEMEEVEEPAPAAEPAPSDLDPTVAEILQQEADREEAARAAERGAAIESQTEMGLDEAAEAQREQESKERIAKIKGEEAEANIAAVAAAAAASRKEMLPDIEEINSTLRSSEERGETVDPEPEVIEEAKKRGFKAGFMTVILILLILLIVYMLADWIISALPAAEGPLNSYTDIVDEGRLWLDGQVEALRDSMQSAVDETVPPDATDTTVEPTETDDTTATESN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PXF0</accession>
    <name>A0A1M5PXF0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_1880</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05933.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900669.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1880"/>
    <dbReference type="EnsemblBacteria" id="SHH05933">
        <property type="protein sequence ID" value="SHH05933"/>
        <property type="gene ID" value="SAMN05444003_1880"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025878">
        <property type="entry name" value="Acyl-CoA_dh-like_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12806">
        <property type="entry name" value="Acyl-CoA_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="81"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="161"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="281"/>
            <end position="440"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_C" evidence="9">
        <location>
            <begin position="453"/>
            <end position="559"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF12806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH05933.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="566" mass="60233" checksum="474D33F9ED2C6AC9" modified="2017-03-15" version="1">MPYRAPTNDFRFLMENVVGFSQVSETERFSEATSDMVDAILTEAAKMSEEILAPLQRNGDLHPAHLENGVVRTSPGFADGYAAIAEGGWIGMSAAPENGGLGLPMTLTTAVNEMMSSACLSLQLNPLMTQGQIEALEHHASDEILNLYVPKLISGEWCGTMNLTEPQAGSDVGALRSKAEPNGDGSYAISGQKIYISWADNDFTENVCHLVLARLPDGVPGTKGISLFMVPKFIPDAEGNLGERNSLRVVSLEHKMGLHGSPTAVMEYDGARGWLVGPEHGGMAAMFTMMNNARLGVGVQGIGSAEGAYQHALGYAQDRKQGKAPGTGTIIEHADVRRMLAEMKADVYAARSIALMNAVAIDMATATEDAGWAARAALLTPICKAFGTDVGIDVSAKGVQVHGGMGFIEETGAAQYSRDVRVTAIYEGTNGIQAMDLVARKMMDGGEAAFALIEEIEGNAEAAKASHPELAEAVWGAAESLRETTEWLVAQEMTDRFAGAVPYLRAFARVLGAHAHLKTALLGDEARLRLATFYIKRLLPEHAGLLAQVREGGEDVMALTPDDLAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PXH5</accession>
    <name>A0A1M5PXH5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 12">Aspartate-semialdehyde dehydrogenase</fullName>
            <shortName evidence="12">ASA dehydrogenase</shortName>
            <shortName evidence="12">ASADH</shortName>
            <ecNumber evidence="7 12">1.2.1.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="12">Aspartate-beta-semialdehyde dehydrogenase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="primary">asd</name>
        <name evidence="14" type="ORF">SAMN05444003_1903</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 12">
            <text>L-aspartate 4-semialdehyde + NADP(+) + phosphate = 4-phospho-L-aspartate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:24284"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57535"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:537519"/>
            <dbReference type="EC" id="1.2.1.11"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 12">Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; (S)-tetrahydrodipicolinate from L-aspartate: step 2/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 12">Amino-acid biosynthesis; L-methionine biosynthesis via de novo pathway; L-homoserine from L-aspartate: step 2/3.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4 12">Amino-acid biosynthesis; L-threonine biosynthesis; L-threonine from L-aspartate: step 2/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6 12">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 12">Belongs to the aspartate-semialdehyde dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.11" evidence="7 12"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06396.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900688.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1903"/>
    <dbReference type="EnsemblBacteria" id="SHH06396">
        <property type="protein sequence ID" value="SHH06396"/>
        <property type="gene ID" value="SAMN05444003_1903"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00016"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00050">
        <property type="reaction ID" value="UER00463"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00051">
        <property type="reaction ID" value="UER00464"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004073">
        <property type="term" value="F:aspartate-semialdehyde dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071266">
        <property type="term" value="P:'de novo' L-methionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019877">
        <property type="term" value="P:diaminopimelate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009088">
        <property type="term" value="P:threonine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02121">
        <property type="entry name" value="ASADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012080">
        <property type="entry name" value="Asp_semialdehyde_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005986">
        <property type="entry name" value="Asp_semialdehyde_DH_beta"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000534">
        <property type="entry name" value="Semialdehyde_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012280">
        <property type="entry name" value="Semialdhyde_DH_dimer_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01118">
        <property type="entry name" value="Semialdhyde_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02774">
        <property type="entry name" value="Semialdhyde_dhC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00859">
        <property type="entry name" value="Semialdhyde_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01296">
        <property type="entry name" value="asd_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9 12" id="KW-0220">Diaminopimelate biosynthesis</keyword>
    <keyword evidence="10 12" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="11 12" id="KW-0486">Methionine biosynthesis</keyword>
    <keyword evidence="12" id="KW-0521">NADP</keyword>
    <keyword evidence="12" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 12" id="KW-0791">Threonine biosynthesis</keyword>
    <feature type="domain" description="Semialdhyde_dh" evidence="13">
        <location>
            <begin position="4"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-thioester intermediate" evidence="12">
        <location>
            <position position="130"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="12">
        <location>
            <position position="243"/>
        </location>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <begin position="11"/>
            <end position="14"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <begin position="39"/>
            <end position="40"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="99"/>
        </location>
        <ligand>
            <name>phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="157"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <begin position="160"/>
            <end position="161"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="180"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="236"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="316"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005021"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00010584"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00013120"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="SMART" id="SM00859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="SHH06396.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="340" mass="37379" checksum="15FE8DCAE707F6CB" modified="2017-03-15" version="1">MGYRIAIVGATGNVGHEMLNILAEREFPVDEIAALASRRSLGSEVSFGEKTLVTQDLDTFDFSGWDMALFAVGSDATKKYAPKAAAAGCVVIDNSSLYRYDPDVPLIVPEVNADAIEGYKNKNIIANPNCSTAQMVVALKPLHDRAKIKRVVVSTYQSVSGAGKEGMDELWDQTKSMYNPTDDVPAKKFQKQIAFNVIPHIDVFMEDGTTKEEWKMVAETKKIVDPSIKVTATCVRVPVFVGHSEAINIEFEDFLDEDEARDILREAPGIMVIDKREDGGYVTPVECVGDYATFISRIRQDSTIENGLNMWCVSDNLRKGAALNAVQIAEVLGQRCLKKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PZI0</accession>
    <name>A0A1M5PZI0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Membrane protease YdiL, CAAX protease family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1936</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06951.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1936"/>
    <dbReference type="EnsemblBacteria" id="SHH06951">
        <property type="protein sequence ID" value="SHH06951"/>
        <property type="gene ID" value="SAMN05444003_1936"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071586">
        <property type="term" value="P:CAAX-box protein processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003675">
        <property type="entry name" value="Rce1-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02517">
        <property type="entry name" value="Rce1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="29"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="69"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="107"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="137"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="238"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="279"/>
            <end position="301"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH06951.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="303" mass="33835" checksum="1B1A58E0BAA6F32E" modified="2017-03-15" version="1">MQRTPRPPHLERFFAPAAITPQIGKVIRVMIGIEVIFWITFAVTSPLFFDEDGDGPFPMDTPVGTTLTFAAFGIVLVLFHALAVWVHQRGVESMLGPLDACWRDFKASLKWVGGLAAVISIASLVGTDPDQIEMRPIPTWVFFGVVGGFFIIIQSMTEEVIYRGYLTQQLAVYRPQRWVWVWIPSLIFGASHYFNGYGPADGLVNVIWATCLGLACVDLTERTGNIGAAIGLHAANNLYATLFIGIEGWPNSGLALFLVEYFDPLVFDYSLPAFFDPVNLFQLLYALFILWMMWMATRIAIRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q1T0</accession>
    <name>A0A1M5Q1T0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2004</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08257.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH08257">
        <property type="protein sequence ID" value="SHH08257"/>
        <property type="gene ID" value="SAMN05444003_2004"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH08257.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="126" mass="13376" checksum="386A7050CACC609D" modified="2017-03-15" version="1">MQVRSPSPLTSASELNDPLTFRKDRLLKTLVSTAGVVLAFGLTACNEPEVVSDVELPTIGSSSDLTAFQGARAGQAEFGIQRLGFQLARSEGLTNYWFNPATGACAKITTDQGRYSEVEMVAGGDC</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q240</accession>
    <name>A0A1M5Q240_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Tfp pilus assembly protein PilF</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1977</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07789.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1977"/>
    <dbReference type="EnsemblBacteria" id="SHH07789">
        <property type="protein sequence ID" value="SHH07789"/>
        <property type="gene ID" value="SAMN05444003_1977"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012115701" evidence="1">
        <location>
            <begin position="25"/>
            <end position="812"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH07789.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="812" mass="89903" checksum="26F171405B434AF9" modified="2017-03-15" version="1">MMNRTSKIAIVAILAFSLAACKTAEERAEERYQSGLNLLESGDAARAIIEFRNVLEVEGNHVGARETLAQIFLDQGDIGSGYNQLLRLAEQYPREPRFRVQLARLAFDNQSWDEFQRHGGSAVELSPEDTEVAAIDLGLKYQEAIEGDDLLRAEALAAEAESLVSELPNNSIIRNMLIDNAIRGSRIDDALVHIDHMISQDPENLRLHQQRLAILAQKQDPDLLEQQLLTMIETFPEEDEIQSTLFRFYTSTGNIQAAEDFLRNVSDPSDEDPSKFLDLIRFVTEVNGPEAGKAEIVRAIASNPNKAPFEALLASIEFAEGKTSEAIADMERIISEIEPSEQRRGIQVGLAKMLIGTGNEVGARRLVEEVLAEYTLQVEALKLQARWQIEADDTDSALLSLRTALDANPDDTEAHELLAEAYQRAGNHELARESLSRAVETSGNAPEQSIRYASALMERRQFLPSENVLLPALRLSPGNPELLAVLGRLYLEMDDQPRAKQVIDTLRRLDTDRTNQIANALQADQLRSASGIGEAVVFLEQLAASSEGGLDAQLLLLRGHLAAGDTDAAQELVQKLIEDNPNNRNLPYALAAVKGASGDLDGAADDYRKLLEDNPNSPRIWLELSRILARTGDTTAAEEVIQQGLAENNDDPNLLWARASILETDNRIEEAIEIYEQLYERASDSIIVANNLASLLSVYRTDEESLERAFTVARRFKDTDIPALQDTYGWILHRRGDSAEAVPYLQNAAKELDDDPLAQYHLAMAYIATGDTENAKVQLQKVLDVAGPVDTRPQIEDARLKLAELSQAPIEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q3J0</accession>
    <name>A0A1M5Q3J0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">tRNA uridine(34) hydroxylase</fullName>
            <ecNumber evidence="1">1.14.-.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">tRNA hydroxylation protein O</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">trhO</name>
        <name evidence="3" type="ORF">SAMN05444003_2026</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes oxygen-dependent 5-hydroxyuridine (ho5U) modification at position 34 in tRNAs.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>AH2 + O2 + uridine(34) in tRNA = 5-hydroxyuridine(34) in tRNA + A + H2O</text>
            <dbReference type="Rhea" id="RHEA:64224"/>
            <dbReference type="Rhea" id="RHEA-COMP:11727"/>
            <dbReference type="Rhea" id="RHEA-COMP:13381"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:136877"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the TrhO family.</text>
    </comment>
    <dbReference type="EC" id="1.14.-.-" evidence="1"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08685.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900786.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2026"/>
    <dbReference type="EnsemblBacteria" id="SHH08685">
        <property type="protein sequence ID" value="SHH08685"/>
        <property type="gene ID" value="SAMN05444003_2026"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006400">
        <property type="term" value="P:tRNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.250.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00469">
        <property type="entry name" value="TrhO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001763">
        <property type="entry name" value="Rhodanese-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036873">
        <property type="entry name" value="Rhodanese-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020936">
        <property type="entry name" value="TrhO"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040503">
        <property type="entry name" value="TRHO_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43268">
        <property type="entry name" value="PTHR43268"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00581">
        <property type="entry name" value="Rhodanese"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17773">
        <property type="entry name" value="UPF0176_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00450">
        <property type="entry name" value="RHOD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52821">
        <property type="entry name" value="SSF52821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50206">
        <property type="entry name" value="RHODANESE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="Rhodanese" evidence="2">
        <location>
            <begin position="121"/>
            <end position="215"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00469"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH08685.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="301" mass="33594" checksum="5D73C02D24CE0B79" modified="2017-03-15" version="1">MYTVAALYHFTRFDDPAAIKDPLLAACREHGISGTLLLAKEGINGTIAGSATGIAAILKVIRALPGCANLEHKESHATVPPFNRMKVRLKKEIVTMGQPDVDPVEKVGKYVAPEDWNELISAPDVAVIDTRNDYEVAIGTFDGAIDPETKSFGEFPAWWEENKDRFHNKRIAMFCTGGIRCEKSTNYLLGQGVEDVFHLKGGILKYLEEVPEEDSTWNGDCFVFDARVSVGHGLKEGPHELCHACRQPILPSDKSRPEYEDGVSCHQCFDTTTEDAKNRFRERQKQIRLSAERGEKHMGEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q3P7</accession>
    <name>A0A1M5Q3P7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Probable queuosine precursor transporter</fullName>
            <shortName evidence="1">Q precursor transporter</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2018</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Involved in the import of queuosine (Q) precursors, required for Q precursor salvage.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08526.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900778.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2018"/>
    <dbReference type="EnsemblBacteria" id="SHH08526">
        <property type="protein sequence ID" value="SHH08526"/>
        <property type="gene ID" value="SAMN05444003_2018"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990397">
        <property type="term" value="P:queuosine salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02088">
        <property type="entry name" value="Q_prec_transport"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003744">
        <property type="entry name" value="YhhQ"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34300">
        <property type="entry name" value="PTHR34300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02592">
        <property type="entry name" value="Vut_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00697">
        <property type="entry name" value="TIGR00697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="31"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="60"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="86"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="118"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="174"/>
            <end position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02088"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH08526.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="209" mass="22422" checksum="9FB05A64BF182D42" modified="2017-03-15" version="1">MTRILPGVLAMAAIVVASNILVQFLILDGLLTWGAFTYPLAFLVTDVMNRVYGVGPARKVVFAGLVVGIICSLIGSQIQLEFGPAVPIRVAIGSATAFLVAQLLDISIFDRLRDGNWWTAPLVSTFVGSIVDTFIFFSVAFSSFFNGFSAAAAEQVSWAQEIVPFFNVGPDAPLWVTLAVADWCVKIAVALIALIPFRIIVGRITQPAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q5H1</accession>
    <name>A0A1M5Q5H1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Reaction center protein L chain</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="17">Photosynthetic reaction center L subunit</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="20" type="ORF">SAMN05444003_2062</name>
    </gene>
    <organism evidence="20 21">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="20 21" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20 21">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Reaction center is composed of four bacteriochlorophylls, two bacteriopheophytins, two ubiquinones, one iron, and three highly hydrophobic polypeptide chains (designated L, M, and H).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cellular chromatophore membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 18">Belongs to the reaction center PufL/M/PsbA/D family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09384.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900818.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2062"/>
    <dbReference type="EnsemblBacteria" id="SHH09384">
        <property type="protein sequence ID" value="SHH09384"/>
        <property type="gene ID" value="SAMN05444003_2062"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030077">
        <property type="term" value="C:plasma membrane light-harvesting complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042717">
        <property type="term" value="C:plasma membrane-derived chromatophore membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042314">
        <property type="term" value="F:bacteriochlorophyll binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045156">
        <property type="term" value="F:electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009772">
        <property type="term" value="P:photosynthetic electron transport in photosystem II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09290">
        <property type="entry name" value="Photo-RC_L"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.85.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036854">
        <property type="entry name" value="Photo_II_D1/D2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005871">
        <property type="entry name" value="Photo_RC_L"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000484">
        <property type="entry name" value="Photo_RC_L/M"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00124">
        <property type="entry name" value="Photo_RC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00256">
        <property type="entry name" value="REACTNCENTRE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81483">
        <property type="entry name" value="SSF81483"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01157">
        <property type="entry name" value="pufL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00244">
        <property type="entry name" value="REACTION_CENTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13" id="KW-0076">Bacteriochlorophyll</keyword>
    <keyword evidence="8" id="KW-0148">Chlorophyll</keyword>
    <keyword evidence="15" id="KW-0157">Chromophore</keyword>
    <keyword evidence="12" id="KW-0460">Magnesium</keyword>
    <keyword evidence="16 19" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-0602">Photosynthesis</keyword>
    <keyword evidence="7" id="KW-0674">Reaction center</keyword>
    <keyword evidence="21" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10 19" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="14 19" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="30"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="85"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="115"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="175"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="233"/>
            <end position="257"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002611"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004548"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00008204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00021599"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022469"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00022991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00033393"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="RuleBase" id="RU004331"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="EMBL" id="SHH09384.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="276" mass="30979" checksum="9B8CAA18FBDA3BD4" modified="2017-03-15" version="1">MAQLSFERKYRVRGGTLVGGDLFDFWVGPFYVGFFGVTTFFFAVLGTILIFYGASQGPTWNPWLISIDPPPLEYGLGIAPLMDGGLWQIITLCAIGAFVSWALREVEICRKLGMGYHVPFAFSIAILAYVTLVVIRPVLLGAWGHAFPYGIFSHLDWVNNVGYAYGNFHYNPAHMVAITFFFTTCLALALHGSLVLSAVNPGKGKTIASPDHEDTYFRDLIGYSIGPLGIHRLGLFLALNAVLWSAICIVISGTIWFDEWIVWWDWYYELPWWVDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QLF3</accession>
    <name>A0A1M5QLF3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Predicted amidohydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2193</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the carbon-nitrogen hydrolase superfamily. NIT1/NIT2 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14955.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901028.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2193"/>
    <dbReference type="EnsemblBacteria" id="SHH14955">
        <property type="protein sequence ID" value="SHH14955"/>
        <property type="gene ID" value="SAMN05444003_2193"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016811">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07572">
        <property type="entry name" value="nit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003010">
        <property type="entry name" value="C-N_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036526">
        <property type="entry name" value="C-N_Hydrolase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045254">
        <property type="entry name" value="Nit1/2_C-N_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001110">
        <property type="entry name" value="UPF0012_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00795">
        <property type="entry name" value="CN_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56317">
        <property type="entry name" value="SSF56317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50263">
        <property type="entry name" value="CN_HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01227">
        <property type="entry name" value="UPF0012"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CN hydrolase" evidence="3">
        <location>
            <begin position="1"/>
            <end position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH14955.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="277" mass="30072" checksum="E727DC1B359AB7FE" modified="2017-03-15" version="1">MKIALLQLTSGDQPAENLPSTLELVRKAAGQGASLILTPEVTNCVTLDRAHQQSVLQHQDDDITLKALRDEAKALGVWISIGSLALKTHDPEGRFANRSFMIDPMGEVVATYDKIHMFDVAVNETETYRESDGYRPGGTAVTVDMPVIKVGMTICYDVRFPHLYRKLAHSGAGLMLVPAAFSPVTGAAHWETLLRARAIETGSFVFAAAQTGNHPTSTGRHRTTHGHSLAVDPWGRVICDAGTQTGVSIVEIDPSEVSKVRSQIPALTHDRPFEDPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QMF3</accession>
    <name>A0A1M5QMF3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA-binding transcriptional regulator, MarR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2192</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901026.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2192"/>
    <dbReference type="EnsemblBacteria" id="SHH14930">
        <property type="protein sequence ID" value="SHH14930"/>
        <property type="gene ID" value="SAMN05444003_2192"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12802">
        <property type="entry name" value="MarR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="9"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH14930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="146" mass="15941" checksum="198C9F4D008C4598" modified="2017-03-15" version="1">MSDAKQNLAITLFSELLTLDQLARMSIARVLPKGMELSHFSVLNHLAHANGEKSPGQLARSFHLTRGAMTNTLSKLEWAGWVHVRPDWDDARKKLVSISPAGIAARDAAIAAIAPIISDAVDSVGEEKVRATLPVLRDLRIKLNED</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QNR6</accession>
    <name>A0A1M5QNR6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 8">DNA polymerase III subunit epsilon</fullName>
            <ecNumber evidence="3 8">2.7.7.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">dnaQ</name>
        <name evidence="10" type="ORF">SAMN05444003_2230</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 8">DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5 8">
            <text>a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)</text>
            <dbReference type="Rhea" id="RHEA:22508"/>
            <dbReference type="Rhea" id="RHEA-COMP:17339"/>
            <dbReference type="Rhea" id="RHEA-COMP:17340"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:173112"/>
            <dbReference type="EC" id="2.7.7.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 8">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="7 8">DNA polymerase III contains a core (composed of alpha, epsilon and theta chains) that associates with a tau subunit. This core dimerizes to form the POLIII' complex. PolIII' associates with the gamma complex (composed of gamma, delta, delta', psi and chi chains) and with the beta chain to form the complete DNA polymerase III complex.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.7" evidence="3 8"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15714.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901092.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2230"/>
    <dbReference type="EnsemblBacteria" id="SHH15714">
        <property type="protein sequence ID" value="SHH15714"/>
        <property type="gene ID" value="SAMN05444003_2230"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06131">
        <property type="entry name" value="DNA_pol_III_epsilon_Ecoli_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006054">
        <property type="entry name" value="DnaQ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006309">
        <property type="entry name" value="DnaQ_proteo"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013520">
        <property type="entry name" value="Exonuclease_RNaseT/DNA_pol3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00929">
        <property type="entry name" value="RNase_T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00479">
        <property type="entry name" value="EXOIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00573">
        <property type="entry name" value="dnaq"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01406">
        <property type="entry name" value="dnaQ_proteo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-0235">DNA replication</keyword>
    <keyword evidence="8" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="8" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="8" id="KW-0464">Manganese</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0540">Nuclease</keyword>
    <keyword evidence="8" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Exonuclease" evidence="9">
        <location>
            <begin position="2"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00020352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00024632"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00025483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00026073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU364087"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM00479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH15714.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="231" mass="25275" checksum="1BA0B2DE3A971AA3" modified="2017-03-15" version="1">MREIVLDTETTGFEPAEGDRIVEIGAVELIGHVPTGRTYHQYINPQRSMPQEAFEVHGLGDEFLADKPVFKDIAQDFVDFVGDATLVIHNAAFDMKFLNAELGWVNRPLLPMDQALDTLAIARRKFPGSPASLDALCRRFGIDNSSRTLHGALLDSEILAEVYLELIGGRQPDFGLATAASVTTSQNDDGDWKADRRQTPLASHLTKEEAAAHASFVDALGDGALWKKLSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QR57</accession>
    <name>A0A1M5QR57_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2268</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16448.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH16448">
        <property type="protein sequence ID" value="SHH16448"/>
        <property type="gene ID" value="SAMN05444003_2268"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025671">
        <property type="entry name" value="HXXEE"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13787">
        <property type="entry name" value="HXXEE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="86"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="138"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="170"/>
            <end position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH16448.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="195" mass="22179" checksum="22CDC44CE4BFF605" modified="2017-03-15" version="1">MTQAMNWLYRNWYCSTIFLAIFVLIFSMAYILDEDMALFLIWMQTVVYFVHQFEEYVLPGGFVEFFNREMLGSTSADFPLDLKASFWINIPIIFVAFPISALLSGIVGLTVGLWTAYFSLINALSHVGMSLKVGYNPGLIVSIVLNIPVSLFTIYYFISNDISSITSNLTSFLIALLVQITLMIFGFRVLKPRAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QSS6</accession>
    <name>A0A1M5QSS6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycosyltransferase, GT2 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2293</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16951.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2293"/>
    <dbReference type="EnsemblBacteria" id="SHH16951">
        <property type="protein sequence ID" value="SHH16951"/>
        <property type="gene ID" value="SAMN05444003_2293"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="248"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_trans_2-like" evidence="2">
        <location>
            <begin position="8"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH16951.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="315" mass="35524" checksum="DCBEF4088EE494FC" modified="2017-03-15" version="1">MQEKLVAVVVSFNRLEQLKKTVSELKDQGVDHILVVDNASTDGSIEWLETQTELTLALMEENRGGAGGFEFGMRMAMRDLSPDWLLLMDEDARPKPGAIAFFRAMQKTNLDLIGAAVTYPSGEICEMNRPVYNPFGSFSAFFGTMFKGRRGFHSPDEDYQSKGTLPVDGVSFVGLFIRAKAVAEDGYPDGRLFIYGDDTLYTLGLNKKGRSVGFAPEIGFEHDCGTIASAGVFMPLWKNYYRFRNLSFVYRLAAGPILFWPVLALMSVRWSMWSRSLPHDQRYVYRKIRRLAISDAVRKNTSRDHDEIVLLGNPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QUW3</accession>
    <name>A0A1M5QUW3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Chromosome partitioning protein, ParB family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2328</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17748.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901247.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2328"/>
    <dbReference type="EnsemblBacteria" id="SHH17748">
        <property type="protein sequence ID" value="SHH17748"/>
        <property type="gene ID" value="SAMN05444003_2328"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003115">
        <property type="entry name" value="ParB/Sulfiredoxin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036086">
        <property type="entry name" value="ParB/Sulfiredoxin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02195">
        <property type="entry name" value="ParBc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00470">
        <property type="entry name" value="ParB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110849">
        <property type="entry name" value="SSF110849"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ParB" evidence="1">
        <location>
            <begin position="75"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH17748.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="356" mass="39712" checksum="DC2DF800EF0D5CDB" modified="2017-03-15" version="1">MAKRRLEPPSADKLAELDAEFRSETQKRPNPATAPIAQVAAETAPLGTAESPGARLNRMDAERLKDAEEKGLLIQEIPLDQIDEKTMIRDRSVLGRAELDELKLSISVNGLRLPIEVSQKEDGTYALLSGYRRLLVHREMAEQYKNGPTTIKAVVVPPKDLASSFISMVEENEVREDLSHFERGRIAVLAAREDAFKSTDHAIKQMFFSASKAKRSKIKSFAEIFEAFGDLLTFAEEMSERRGLRIVNALRQGGEDQLRDALSRIAARDFEDEWNAIEPILKQIEEGAPKAKKMGRPKAVTPAGWVGRDTLKLSTGVTLTKGVDSHGYFIRLKGRAVDVETIETAMIELQRLFEKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QXW7</accession>
    <name>A0A1M5QXW7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 7">dTDP-4-dehydrorhamnose 3,5-epimerase</fullName>
            <ecNumber evidence="3 7">5.1.3.13</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Thymidine diphospho-4-keto-rhamnose 3,5-epimerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_2380</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 7">Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>dTDP-4-dehydro-6-deoxy-alpha-D-glucose = dTDP-4-dehydro-beta-L-rhamnose</text>
            <dbReference type="Rhea" id="RHEA:16969"/>
            <dbReference type="ChEBI" id="CHEBI:57649"/>
            <dbReference type="ChEBI" id="CHEBI:62830"/>
            <dbReference type="EC" id="5.1.3.13"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Carbohydrate biosynthesis; dTDP-L-rhamnose biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.</text>
    </comment>
    <dbReference type="EC" id="5.1.3.13" evidence="3 7"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901327.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2380"/>
    <dbReference type="EnsemblBacteria" id="SHH18781">
        <property type="protein sequence ID" value="SHH18781"/>
        <property type="gene ID" value="SAMN05444003_2380"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00124"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008830">
        <property type="term" value="F:dTDP-4-dehydrorhamnose 3,5-epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019305">
        <property type="term" value="P:dTDP-rhamnose biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000888">
        <property type="entry name" value="dTDP_sugar_isom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21047">
        <property type="entry name" value="PTHR21047"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00908">
        <property type="entry name" value="dTDP_sugar_isom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01221">
        <property type="entry name" value="rmlC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0413">Isomerase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="5">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="5">
        <location>
            <position position="132"/>
        </location>
    </feature>
    <feature type="site" description="Participates in a stacking interaction with the thymidine ring of dTDP-4-oxo-6-deoxyglucose" evidence="6">
        <location>
            <position position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001298"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001997"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00019595"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR600888-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR600888-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU364069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH18781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="188" mass="20704" checksum="AFCC82E0888A3F89" modified="2017-03-15" version="1">MNIEETALKDVFAITPQRFGDDRGFFSETYNRQAWADAGLDYNFVQDNHSKSGAAGTVRGLHYQSPPAAQDKLVRVVSGSIFDVAVDVRLGSPNFGKWIAVELSAENGKQLFVPKGFLHGFLTLVDATEVVYKCTDFYAPNCDGAVRFDDPSIGIDWGWDTGNVILSEKDANAPSFDTFKSPFTYEAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QY21</accession>
    <name>A0A1M5QY21_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">dTDP-glucose 4,6-dehydratase</fullName>
            <ecNumber evidence="4 5">4.2.1.46</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2379</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>dTDP-alpha-D-glucose = dTDP-4-dehydro-6-deoxy-alpha-D-glucose + H2O</text>
            <dbReference type="Rhea" id="RHEA:17221"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:57477"/>
            <dbReference type="ChEBI" id="CHEBI:57649"/>
            <dbReference type="EC" id="4.2.1.46"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 5">
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3 5">Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.46" evidence="4 5"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18756.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901325.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2379"/>
    <dbReference type="EnsemblBacteria" id="SHH18756">
        <property type="protein sequence ID" value="SHH18756"/>
        <property type="gene ID" value="SAMN05444003_2379"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008460">
        <property type="term" value="F:dTDP-glucose 4,6-dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009225">
        <property type="term" value="P:nucleotide-sugar metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05246">
        <property type="entry name" value="dTDP_GD_SDR_e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005888">
        <property type="entry name" value="dTDP_Gluc_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016040">
        <property type="entry name" value="NAD(P)-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16363">
        <property type="entry name" value="GDP_Man_Dehyd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01181">
        <property type="entry name" value="dTDP_gluc_dehyt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0456">Lyase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD(P)-bd_dom" evidence="6">
        <location>
            <begin position="4"/>
            <end position="318"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001539"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001911"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008178"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011990"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU004473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF16363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH18756.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="346" mass="38192" checksum="CD8740F905DF0BAA" modified="2017-03-15" version="1">MRILVTGGAGFIGSAVVRQAVTDGHDVLNVDKLTYAACLENLSSVEEAPNYTFLKADICDADSMAAAFEGFQPDAVMHLAAESHVDRSIDGPGAFIETNITGTYTLLQAARAYWEKRGKPDNFRFHHISTDEVFGTLGAEGMFTEDTPYAPNSPYSASKAASDHLVRAWSETYGLPVVLSNCSNNYGPFHFPEKLIPVVILNALAGKPIPIYGNGENVRDWLYVEDHADALLTVLQRGELGRSYNIGGENEASNLELVKMICSILDELHLGTDPYADLITFVADRPGHDLRYAIDPTRIREELGWRPSVTLEQGLRKTVQWYLDNEVWWKALQSRIGVGERLGLKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QZ35</accession>
    <name>A0A1M5QZ35_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Mannose-1-phosphate guanylyltransferase</fullName>
            <ecNumber evidence="3">2.7.7.13</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_2381</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>alpha-D-mannose 1-phosphate + GTP + H(+) = diphosphate + GDP-alpha-D-mannose</text>
            <dbReference type="Rhea" id="RHEA:15229"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:57527"/>
            <dbReference type="ChEBI" id="CHEBI:58409"/>
            <dbReference type="EC" id="2.7.7.13"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the mannose-6-phosphate isomerase type 2 family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.13" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18793.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901328.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2381"/>
    <dbReference type="EnsemblBacteria" id="SHH18793">
        <property type="protein sequence ID" value="SHH18793"/>
        <property type="gene ID" value="SAMN05444003_2381"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004475">
        <property type="term" value="F:mannose-1-phosphate guanylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000271">
        <property type="term" value="P:polysaccharide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006375">
        <property type="entry name" value="Man1P_GuaTrfase/Man6P_Isoase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001538">
        <property type="entry name" value="Man6P_isomerase-2_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005835">
        <property type="entry name" value="NTP_transferase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01050">
        <property type="entry name" value="MannoseP_isomer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00483">
        <property type="entry name" value="NTP_transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01479">
        <property type="entry name" value="GMP_PMI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4 8" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="NTP_transferase" evidence="6">
        <location>
            <begin position="4"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="domain" description="MannoseP_isomer" evidence="7">
        <location>
            <begin position="315"/>
            <end position="465"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001083"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006115"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU004190"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH18793.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="470" mass="51689" checksum="D65BC0204D2BDA6A" modified="2017-03-15" version="1">MIIPVILCGGSGTRLWPLSRKSYPKQFSPLTGEESLFQASVKRFGSKEFTPPIIVTSNDFRFIATEQLLDAGIEESTVLIEPEGRDTAPAILAAALVQYKKDPNGLLLVAPSDHVISDDGSFEHSIRAAIPAAESGDIVTFGIRPDRPETGYGYLELAEQPDDDVRPIKLQSFVEKPDAERAKELLAEGRYLWNAGIFLFSAQVIVDAFKSYAPQILEAVSISVGEAKPDLSFTRLDPEAWGNAPAISIDYAIMEKSENLSVVPFNGSWSDLGDWASVWRETQVEGMSTKGEVTVIDCKDTLLRSEVDGQAIVGIGLENVVAVAMPDAVLVARKDSAQDVKKAVTILKENAAPQAENFPKDHRPWGWFESLVIGDRFQVKRIVVHPGAALSLQSHHHRAEHWIVVEGTAKVTIDEEVKLVSENQSVYIPLGAVHRMENPGKVNIVLIEVQTGTYLGEDDIIRYEDVYSRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QZT7</accession>
    <name>A0A1M5QZT7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Spheroidene monooxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2411</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19376.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2411"/>
    <dbReference type="EnsemblBacteria" id="SHH19376">
        <property type="protein sequence ID" value="SHH19376"/>
        <property type="gene ID" value="SAMN05444003_2411"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH19376.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="234" mass="25976" checksum="2718E43E50588FFA" modified="2017-03-15" version="1">MSQTVSLSFFRFEGALKRLWAMSMMGAARRPLSKTPDIGFWKLCGSGVGEGFTPTSNPSVIAIVATWPDPQTAVNRIRSAPIFQRYRNRAEEDWTVFLHATSSRGQWSGVEPFVPEDLTIQGPLAALTRASIKPRILSRFWGRVPSISDVIGKDSNVAFKIGIGEIPMLHQVTFSIWPSVQSMNDFARTGPHAEAIRAVRDEGWFSEELYARFVIHSDLGSWGGESPLKHLEAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-09-29" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R0A7</accession>
    <name>A0A1M5R0A7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2433</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901402.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH19834">
        <property type="protein sequence ID" value="SHH19834"/>
        <property type="gene ID" value="SAMN05444003_2433"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032874">
        <property type="entry name" value="DDE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13610">
        <property type="entry name" value="DDE_Tnp_IS240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DDE_Tnp_IS240" evidence="1">
        <location>
            <begin position="78"/>
            <end position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13610"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH19834.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="235" mass="28543" checksum="457DD14BD7E3214E" modified="2017-03-15" version="1">MTKRSPFRYFKTSPEIIRLAVMLYVRFPLSLRNVEDLLHERGIDVSHETIRFWWNRFGPIFAAEVRRNRVANNRYYSNWQWHLDEVFVKINGETHYLWRAVDHEGEVLESYVTKRLNRKAALKFLRKTMERYGEPEIIVMDRLKSYGAALRMIGNSQRQVTGRWLNNRAENSYLLFRRRERAMLRFRQMRSLQKFTAIHFSIHNHFNQERHLYSRSNFKLNRTAALAEWRQLCSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R0M1</accession>
    <name>A0A1M5R0M1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Protoporphyrin IX magnesium-chelatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2409</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the Mg-chelatase subunits D/I family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19343.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2409"/>
    <dbReference type="EnsemblBacteria" id="SHH19343">
        <property type="protein sequence ID" value="SHH19343"/>
        <property type="gene ID" value="SAMN05444003_2409"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01451">
        <property type="entry name" value="vWA_Magnesium_chelatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041702">
        <property type="entry name" value="BchD/ChlD_VWA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041628">
        <property type="entry name" value="ChlI/MoxR_AAA_lid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17863">
        <property type="entry name" value="AAA_lid_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13519">
        <property type="entry name" value="VWA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00327">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50234">
        <property type="entry name" value="VWFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VWFA" evidence="3">
        <location>
            <begin position="350"/>
            <end position="530"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="223"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="275"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="278"/>
            <end position="293"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005799"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH19343.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="532" mass="57456" checksum="277227B2EA4C96A6" modified="2017-03-15" version="1">MSLIRPWDRALLCLKLLEIDPTLGGIVIASRSSPVRDRLLRHLPKSTRRIHGQMDDTALFGGMDVTSTLSKGAVVMTSGIAVNDDPLLLTMAERTPNERAVRLVSETDSILYVLDESTEDEDLLPPVFTEQLAFHIDLKDLSLSDARSMPAEVVPSDTISTDQAIELFAQTSATLGITSLRAPSFALKTARALARLDGRSEITQDDANTAAMLVFAHRTTRLPEFEPEPEEPEAPAEPKQNPQNEIVPEDMMIEAVKMLLPNDVLLFLNGTSRTGKGRGAGRVRKSNRRGRPKPSRKGNPDSQTRLDVIATLRSAAPMQGLRANAARRTAIQIRSSDLHVKQFEEKSDRLIIFVVDASGSSAVGRLAEAKGAVEYLLADAYARRDHVALVAFRGEAAELLLPPTRSLVQTKRRLASLPGGGGTPLASGIEQGLMQAISGQRKGMTPVICILTDGRANIARDGSPDRQAAAQDAKDMAKQIRGLGFDSIVIDTGNRPEPQLRTLSSIMDACYISLPRANASGISKAVSSAIAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R1D0</accession>
    <name>A0A1M5R1D0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">VPLPA-CTERM protein sorting domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2441</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH19978">
        <property type="protein sequence ID" value="SHH19978"/>
        <property type="gene ID" value="SAMN05444003_2441"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022472">
        <property type="entry name" value="VPLPA-CTERM"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03370">
        <property type="entry name" value="VPLPA-CTERM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012093103" evidence="2">
        <location>
            <begin position="29"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="183"/>
            <end position="202"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH19978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="209" mass="21513" checksum="5410214EA6E50CF5" modified="2017-03-15" version="1">MKSLLVTSTILASTSLSAVLLPGSGATAATFDAIYIESTDNRPGSTGDISGANDLGLIADGSQIGIAGRIVSAEDMWRFQTDAGWVIGFVDLPIDDQLYFDSSNITNPIGDFADNADTTTAIFSIFDASDNSLLFSNTISAAAFGVGTQSELDYSGTAGSFLLRIDGQDGSPGATYDIGISTVPLPGAVWLLLAGVGGLAAMKRRKNAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R9X0</accession>
    <name>A0A1M5R9X0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2469</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23157.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH23157">
        <property type="protein sequence ID" value="SHH23157"/>
        <property type="gene ID" value="SAMN05444003_2469"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH23157.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="119" mass="12888" checksum="B77749FC32C640C6" modified="2017-03-15" version="1">MWMSDLDHMIAYSVAALASGDQNRIQSLVRDLAEDWPAQSALTVSFALTSAAAELEGPSIEDQDAANSAYRLAALVAADVMAIEAMGQSNAKTTHLLQFWQRVDPYFIKTAGPQFIPSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RB92</accession>
    <name>A0A1M5RB92_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Alkane 1-monooxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_2477</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Fe(3+)</name>
            <dbReference type="ChEBI" id="CHEBI:29034"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cell inner membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the fatty acid desaturase type 1 family. AlkB subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23339.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2477"/>
    <dbReference type="EnsemblBacteria" id="SHH23339">
        <property type="protein sequence ID" value="SHH23339"/>
        <property type="gene ID" value="SAMN05444003_2477"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03512">
        <property type="entry name" value="Alkane-hydroxylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033885">
        <property type="entry name" value="AlkB/XylM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005804">
        <property type="entry name" value="FA_desaturase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38674">
        <property type="entry name" value="PTHR38674"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00487">
        <property type="entry name" value="FA_desaturase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 10" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="7 10" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="40"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="74"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="111"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="223"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="domain" description="FA_desaturase" evidence="9">
        <location>
            <begin position="108"/>
            <end position="336"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00487"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH23339.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="380" mass="43986" checksum="75991D5CAA973827" modified="2017-03-15" version="1">MTSMPSTRPYSGLASAAPFWLSLALIPLVMISAINGGWTLILVPVATWYLFSVLDLIVGLYKENADPQTPETELFWYKAITIIWAPVQVMTIFGAMIYATSTDHLNGWEQWGLFIGIGVISGTIGINYSHELMHQRPKLERWMADILLASVLYSHFRSEHLLVHHRYVATPKDPVTARYGEGFWRYFPRVLCQCYASAFNAEKAMLARKNLPWTDRSNPFWRYWGLQAAFLVLSVLIAGWWGVLLFATQAFVAFFQLELVNYIEHYGLTRKHLGDGKYEHVQPHHSWNSAHRASNWLLINLQRHSDHHFKPDRRFPLLQTYDEDEAPQLPFGYPVMTIAALSPTLWRKVMNPKVKAWRARYYPEIEDWTPYKTAANPMPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RBK8</accession>
    <name>A0A1M5RBK8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2471</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23203.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2471"/>
    <dbReference type="EnsemblBacteria" id="SHH23203">
        <property type="protein sequence ID" value="SHH23203"/>
        <property type="gene ID" value="SAMN05444003_2471"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012364216" evidence="1">
        <location>
            <begin position="33"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH23203.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="105" mass="11491" checksum="3C7E6E7FF8707991" modified="2017-03-15" version="1">MNNTPVTGHLIPMKQLLFSILVTGLSATAAQAACYADYKAKQDDPLRLHYGVAEISGDCTVRSAERQLQGRLASQGWTLLNVLSVFDDAGLDERKDSAGDNYLRY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RCK4</accession>
    <name>A0A1M5RCK4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Hemolysin-type calcium-binding repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2515</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24092.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH24092">
        <property type="protein sequence ID" value="SHH24092"/>
        <property type="gene ID" value="SAMN05444003_2515"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.150.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018511">
        <property type="entry name" value="Hemolysin-typ_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001343">
        <property type="entry name" value="Hemolysn_Ca-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011049">
        <property type="entry name" value="Serralysin-like_metalloprot_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00353">
        <property type="entry name" value="HemolysinCabind"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51120">
        <property type="entry name" value="SSF51120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00330">
        <property type="entry name" value="HEMOLYSIN_CALCIUM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH24092.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="138" mass="14178" checksum="D383A5908B729C2A" modified="2017-03-15" version="1">MLIPLKGIFGDDTLDGGAGADHLFGGAGHDELYGGDDLDRDFLNGGSGSDVLTAGANDHLNGGAGADVFVIPIKADAVVDDYDATQDQLEVLYVVDTAPTLYLENNSEGLSLIAGDETVATFSHGTPIDLSQIKLIAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5REY0</accession>
    <name>A0A1M5REY0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Phosphoserine phosphatase</fullName>
            <ecNumber evidence="6">3.1.3.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">O-phosphoserine phosphohydrolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">SAMN05444003_2555</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>H2O + O-phospho-D-serine = D-serine + phosphate</text>
            <dbReference type="Rhea" id="RHEA:24873"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:35247"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58680"/>
            <dbReference type="EC" id="3.1.3.3"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H2O + O-phospho-L-serine = L-serine + phosphate</text>
            <dbReference type="Rhea" id="RHEA:21208"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57524"/>
            <dbReference type="EC" id="3.1.3.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="4">Amino-acid biosynthesis; L-serine biosynthesis; L-serine from 3-phospho-D-glycerate: step 3/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the HAD-like hydrolase superfamily. SerB family.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.3" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24922.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901668.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2555"/>
    <dbReference type="EnsemblBacteria" id="SHH24922">
        <property type="protein sequence ID" value="SHH24922"/>
        <property type="gene ID" value="SAMN05444003_2555"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00135">
        <property type="reaction ID" value="UER00198"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036424">
        <property type="term" value="F:L-phosphoserine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006564">
        <property type="term" value="P:L-serine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004469">
        <property type="entry name" value="PSP"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00029">
        <property type="entry name" value="phosphoserine_phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00338">
        <property type="entry name" value="serB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="10" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="11" id="KW-0460">Magnesium</keyword>
    <keyword evidence="9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0718">Serine biosynthesis</keyword>
    <feature type="active site" description="Nucleophile" evidence="14">
        <location>
            <position position="82"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="14">
        <location>
            <position position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000860"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001197"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005135"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00009184"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00015196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023299"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00031693"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PIRSR" id="PIRSR604469-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="SHH24922.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="291" mass="31261" checksum="F88D965D1048CB37" modified="2017-03-15" version="1">MFVATLISAPNQRGLDAALVDNLRNAWGGGETHWLAIDEAAEFALPMRPDNVDDVWKSCQDMSVDLIVQPLEGRRKKMLLADMDSTMIQQECIDELATEAGVGDRVAEITAKAMNGELDFEGAIDERVGLLKDLPETIIDHVLNTRITYMPGGATLLATMKANGAYAALVSGGFTAFTAKVAAHLGFDENRANTLEIVDGKLSGKVARPILGQEAKLDALNEITDRLGIQTSDVLAVGDGMNDLLMLKNAGTGVALHGKPALQEKCKVRINFGDLTALLYLQGYSNTEFVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RLV7</accession>
    <name>A0A1M5RLV7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Electron transfer flavoprotein beta subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2658</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ETF beta-subunit/FixA family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH27180.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901830.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2658"/>
    <dbReference type="EnsemblBacteria" id="SHH27180">
        <property type="protein sequence ID" value="SHH27180"/>
        <property type="gene ID" value="SAMN05444003_2658"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01714">
        <property type="entry name" value="ETF_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000049">
        <property type="entry name" value="ET-Flavoprotein_bsu_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014730">
        <property type="entry name" value="ETF_a/b_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012255">
        <property type="entry name" value="ETF_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033948">
        <property type="entry name" value="ETF_beta_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21294">
        <property type="entry name" value="PTHR21294"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01012">
        <property type="entry name" value="ETF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000090">
        <property type="entry name" value="Beta-ETF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00893">
        <property type="entry name" value="ETF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01065">
        <property type="entry name" value="ETF_BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0249">Electron transport</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ETF" evidence="3">
        <location>
            <begin position="23"/>
            <end position="215"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH27180.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="252" mass="26830" checksum="A83369DAAA7DBB07" modified="2017-03-15" version="1">MKVLVPVKRVIDYNVKVRVKADGSGVDLANVKMSMNPFDEIAVEEAIRLKEAGKADEVVAVSVGVKQAQETLRTALAMGADRAILVVAADDVHNDIEPLAVAKILKGIVDEEQPGLVLCGKQAIDNDMNATGQMLSALLGWSQATFASEVDVDGDSAVVTREVDGGLQTIKVKMPSIVTVDLRLNEPRYASLPNIMKAKKKPLDEKTPADYGVDASPRLTVVSTKEPEARSAGIMVGSVDELVEKLKEAGAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RXH6</accession>
    <name>A0A1M5RXH6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Chorismate mutase</fullName>
            <ecNumber evidence="1">5.4.99.5</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2753</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EC" id="5.4.99.5" evidence="1"/>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31067.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902026.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2753"/>
    <dbReference type="EnsemblBacteria" id="SHH31067">
        <property type="protein sequence ID" value="SHH31067"/>
        <property type="gene ID" value="SAMN05444003_2753"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004106">
        <property type="term" value="F:chorismate mutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046417">
        <property type="term" value="P:chorismate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.59.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036263">
        <property type="entry name" value="Chorismate_II_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010951">
        <property type="entry name" value="CM_bact"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036979">
        <property type="entry name" value="CM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002701">
        <property type="entry name" value="CM_II_prokaryot"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01817">
        <property type="entry name" value="CM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00830">
        <property type="entry name" value="CM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48600">
        <property type="entry name" value="SSF48600"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01795">
        <property type="entry name" value="CM_mono_cladeE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51168">
        <property type="entry name" value="CHORISMATE_MUT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Chorismate mutase" evidence="2">
        <location>
            <begin position="6"/>
            <end position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51168"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH31067.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="100" mass="11195" checksum="17011A6116062957" modified="2017-03-15" version="1">MTDAATKAAELLKGHRNSIDRLDAILVYTLGERFKHTQAVGKLKASHDLPPSDPAREAAQIARLEDLAKEADLDPEFAKKFLNFIIAEVIQHHKQHQDQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S2H1</accession>
    <name>A0A1M5S2H1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Hemerythrin HHE cation binding domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2820</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902120.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH32640">
        <property type="protein sequence ID" value="SHH32640"/>
        <property type="gene ID" value="SAMN05444003_2820"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012312">
        <property type="entry name" value="Hemerythrin-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01814">
        <property type="entry name" value="Hemerythrin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hemerythrin" evidence="1">
        <location>
            <begin position="38"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH32640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="188" mass="21742" checksum="8CC99429997BEE3E" modified="2017-03-15" version="1">MLNTYKIRESDMPEEMRFLLDKYPRDEWDAHPGFHEKTRHWLGAHQMFRRVSERVRLDTEAVLNKDIALGDYIGRLSYFGGNLVANLHGHHGWEDHSYFPELSAADPRFDKGLDLLEQDHADLDKVSDDITRKANRVIKLATLDEAQSLEEANDVLPAADAIEAFLNRHLSDEEELAVPIILHYRLRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S2V4</accession>
    <name>A0A1M5S2V4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative glutathione S-transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2819</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32618.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902119.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH32618">
        <property type="protein sequence ID" value="SHH32618"/>
        <property type="gene ID" value="SAMN05444003_2819"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004364">
        <property type="term" value="F:glutathione transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006749">
        <property type="term" value="P:glutathione metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010987">
        <property type="entry name" value="Glutathione-S-Trfase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036282">
        <property type="entry name" value="Glutathione-S-Trfase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004045">
        <property type="entry name" value="Glutathione_S-Trfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016639">
        <property type="entry name" value="GST_Omega/GSH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32419">
        <property type="entry name" value="PTHR32419"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13409">
        <property type="entry name" value="GST_N_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47616">
        <property type="entry name" value="SSF47616"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50405">
        <property type="entry name" value="GST_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GST C-terminal" evidence="1">
        <location>
            <begin position="183"/>
            <end position="316"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH32618.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="338" mass="37596" checksum="DA84208EE4E30E90" modified="2017-03-15" version="1">MTKDASTQEDQTDAKGRRARGEFVRGVSGFRSAIGDPDFPAEPGRYHLFVALNCPWCHRVTLARAVLGLEDSITLDVAFPNRTGEEDPAGPNLWEFAPKRVASLTGQTLDECTLETGTGEGLRLAKQVYQREGSDEQSVPILYDKVTGRIVNNESAEIIRMLDVHSGALGSNLAGRPRLLPDDETVRDDIATLNERIYTTINNGAYKAGFSSDQTVYADAFKAYFETLEHLEGLLSNGRLYLTGDAFTEADLRLFPTLYRHDPVYYVRMKLNGAHILDYPNLWRWLCRVYALNGVSTAGSLVHCRQGYFGRSWNGVVPLGPLSPMTYPEAYAHPELAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S3A5</accession>
    <name>A0A1M5S3A5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Predicted kinase, aminoglycoside phosphotransferase (APT) family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2833</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2833"/>
    <dbReference type="EnsemblBacteria" id="SHH32969">
        <property type="protein sequence ID" value="SHH32969"/>
        <property type="gene ID" value="SAMN05444003_2833"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd05154">
        <property type="entry name" value="ACAD10_11_N-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041726">
        <property type="entry name" value="ACAD10_11_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002575">
        <property type="entry name" value="Aminoglycoside_PTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01636">
        <property type="entry name" value="APH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="APH" evidence="1">
        <location>
            <begin position="32"/>
            <end position="250"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH32969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="343" mass="38438" checksum="D2BF38CC15440BA9" modified="2017-03-15" version="1">MNSGIGAFDVLAAPDLEAYLVKKIVGFQGPTEIEAFASGQSNPTYLITTPDKKYVLRKKPEGVLLKSAHAVDREYRVQRALWDSNVPVVRMLHLCEDPSVLGTAFYVMEHAEGRIFWDPALPELAPDERQEVYAEMARVLAEIHSVDLHTSGLVSFGRADGYYSRQLKLWTTQYEASRTEDLPEMDGLRYWLEENLPSDSGQVSLVHGDYRIDNLMFAPDSLKIIAVFDWELSTLGDPLADLAYQVMQRAMGRDWYLRGLEGLDVETLGIPSEARYVDAYCKSRGINEIEHWNFAKVFAFYRFAAICQGVKKRGLDGNAASPDAARVGAMAAPLARLGYRLVC</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S3I8</accession>
    <name>A0A1M5S3I8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Predicted metal-dependent peptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2836</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33036.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2836"/>
    <dbReference type="EnsemblBacteria" id="SHH33036">
        <property type="protein sequence ID" value="SHH33036"/>
        <property type="gene ID" value="SAMN05444003_2836"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025154">
        <property type="entry name" value="Put_metallopeptidase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018698">
        <property type="entry name" value="VWA-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09967">
        <property type="entry name" value="DUF2201"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13203">
        <property type="entry name" value="DUF2201_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF2201_N" evidence="2">
        <location>
            <begin position="8"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="domain" description="DUF2201" evidence="1">
        <location>
            <begin position="286"/>
            <end position="407"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH33036.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="409" mass="44593" checksum="488A3422D8ADE944" modified="2017-03-15" version="1">MHSRSGEHSKRVSAALSLLPEIDPAIAALALWCQYRDTNGSTATEGETIFVGPEFSLLPISEQTGLISHHILHVALRHSSRRASAQERYGARFQADLYDLACDAIINEALLQAKHALPRPAVRASEIVELLPASERPNNILSEWDSDKLYAVLAVQAGRQGHDAGGAVEIYANSRNFEPDLENTTPSSKKPEFWSGRVEQALQIGNRAGSGIGVALARFGDLPVATVPWEIRLRRLLAKTLSQHPVLSHKRPSKSWLAQDALSREREENGPGFEPAILRKVERASLVVAIDTSSSIDDATLDLFASEAISIIRRTGHEAYLFGFDTEVHSRHQLNGIGDLNRVNLLRDGGTDFCPMLKEAEALAPSAIIILTDLDAPTPNRSEIDIIWAVPVAPTSPPNCGTVLVMDDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SD08</accession>
    <name>A0A1M5SD08_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">L-alanine-DL-glutamate epimerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2902</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36340.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902287.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2902"/>
    <dbReference type="EnsemblBacteria" id="SHH36340">
        <property type="protein sequence ID" value="SHH36340"/>
        <property type="gene ID" value="SAMN05444003_2902"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036849">
        <property type="entry name" value="Enolase-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029017">
        <property type="entry name" value="Enolase-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029065">
        <property type="entry name" value="Enolase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013342">
        <property type="entry name" value="Mandelate_racemase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034593">
        <property type="entry name" value="Mandelate_racemase_DgoD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013341">
        <property type="entry name" value="Mandelate_racemase_N_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48080">
        <property type="entry name" value="PTHR48080"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13378">
        <property type="entry name" value="MR_MLE_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02746">
        <property type="entry name" value="MR_MLE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00922">
        <property type="entry name" value="MR_MLE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51604">
        <property type="entry name" value="SSF51604"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54826">
        <property type="entry name" value="SSF54826"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MR_MLE" evidence="2">
        <location>
            <begin position="142"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="336"/>
            <end position="367"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH36340.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="367" mass="39278" checksum="20066DBD562EF02B" modified="2017-03-15" version="1">MKITNLTLWSVDLTSYETYYMAEGKTCDTVESHILCLETDTGLKGWGEVCPIPHYLPAFAKGVPTAVAELAEILIGQEVGGPDAIMRRLDAHLIGHDYAKSIVDIALWDLFGKMTGLPVYDLLGGRTRKDMPLYHSITCIAPDDMARIATEAYATGIRQFQVKLGADADWDADAERLIKVREAVGKGPLVYGDWNCGATKLHATRTGRAVAHLDIMLEQPCATLEDCAAVRQATGLPMKIDENAFDQASLLKAHQLGCLDAVALKLSKFGGLSAMRRARDLTAHLGAVICAECTWGSDVVTAASLHFAASTPQGSLLNTCDLSNYVGPRVAPDCPTRSNGRIAPPEGPGLGATPDMSVLGDPVLDLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SF11</accession>
    <name>A0A1M5SF11_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="13">Na(+)-translocating NADH-quinone reductase subunit B</fullName>
            <shortName evidence="13">Na(+)-NQR subunit B</shortName>
            <shortName evidence="13">Na(+)-translocating NQR subunit B</shortName>
            <ecNumber evidence="13">7.2.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">NQR complex subunit B</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">NQR-1 subunit B</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="primary">nqrB</name>
        <name evidence="15" type="ORF">SAMN05444003_2924</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="13">NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="13">
            <text>a ubiquinone + H(+) + n Na(+)(in) + NADH = a ubiquinol + n Na(+)(out) + NAD(+)</text>
            <dbReference type="Rhea" id="RHEA:47748"/>
            <dbReference type="Rhea" id="RHEA-COMP:9565"/>
            <dbReference type="Rhea" id="RHEA-COMP:9566"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16389"/>
            <dbReference type="ChEBI" id="CHEBI:17976"/>
            <dbReference type="ChEBI" id="CHEBI:29101"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="7.2.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="13 14">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="13">Composed of six subunits; NqrA, NqrB, NqrC, NqrD, NqrE and NqrF.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="13">Cell membrane</location>
            <topology evidence="13">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="13">Belongs to the NqrB/RnfD family.</text>
    </comment>
    <dbReference type="EC" id="7.2.1.1" evidence="13"/>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36868.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902325.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2924"/>
    <dbReference type="EnsemblBacteria" id="SHH36868">
        <property type="protein sequence ID" value="SHH36868"/>
        <property type="gene ID" value="SAMN05444003_2924"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016655">
        <property type="term" value="F:oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022904">
        <property type="term" value="P:respiratory electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006814">
        <property type="term" value="P:sodium ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00426">
        <property type="entry name" value="NqrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010966">
        <property type="entry name" value="NqrB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004338">
        <property type="entry name" value="NqrB/RnfD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30578">
        <property type="entry name" value="PTHR30578"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03116">
        <property type="entry name" value="NQR2_RnfD_RnfE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF016055">
        <property type="entry name" value="NADH-UbQ_OxRdtase_B_su"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01937">
        <property type="entry name" value="nqrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="2 13" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 13 14" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="6 13 14" id="KW-0288">FMN</keyword>
    <keyword evidence="11 13" id="KW-0406">Ion transport</keyword>
    <keyword evidence="12 13" id="KW-0472">Membrane</keyword>
    <keyword evidence="10 13" id="KW-0520">NAD</keyword>
    <keyword evidence="4 13 14" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="13" id="KW-0915">Sodium</keyword>
    <keyword evidence="13" id="KW-0739">Sodium transport</keyword>
    <keyword evidence="8 13" id="KW-1278">Translocase</keyword>
    <keyword evidence="7 13" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 13" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1 13" id="KW-0813">Transport</keyword>
    <keyword evidence="13 15" id="KW-0830">Ubiquinone</keyword>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="56"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="116"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="149"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="253"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="281"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="313"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="343"/>
            <end position="361"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="367"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="modified residue" description="FMN phosphoryl threonine" evidence="13 14">
        <location>
            <position position="226"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00426"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PIRSR" id="PIRSR016055-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="SHH36868.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="399" mass="43986" checksum="2A776AF9A56A6C87" modified="2017-03-15" version="1">MGLRNFFDRIEPHFEKGGKWEKYFPLYEMVESFAFTPKTVTTAAPHARSYIDMKRIMTYVVLATIPCILMALYNTGYQTNLAIAEFGPSGWRASIIEFLRIGFNPANPFANMMHGLMYFLPIYITTLVAGGICEVIFATVRKHEVNEGFLVTSMLYTLILPATTPLWQVALGIIFGVIIGKEVFGGTGKNFLNPALTGRAFLYFAYPAQLSGDSVWVPVDGFTGATALAVTAADGVQELAAHGITWWDSFLGFIPGSLGETSTVAALLGLAFLLMTKIANYRMVVGCLGGMIGFSLLLNWIGSDTNPMFAMPWYWHLVLGGYAFGLVFMVTEPVSGSHTNLGRYIYGALIGFMVVMIRVINPAFPEGMMLAILFGNVFAPLIDYFVVQANIKRRAKRHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SGJ1</accession>
    <name>A0A1M5SGJ1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Hint domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2930</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37013.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902332.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2930"/>
    <dbReference type="EnsemblBacteria" id="SHH37013">
        <property type="protein sequence ID" value="SHH37013"/>
        <property type="gene ID" value="SAMN05444003_2930"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028992">
        <property type="entry name" value="Hedgehog/Intein_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036844">
        <property type="entry name" value="Hint_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13403">
        <property type="entry name" value="Hint_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51294">
        <property type="entry name" value="SSF51294"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hint_2" evidence="1">
        <location>
            <begin position="124"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13403"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH37013.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="334" mass="36255" checksum="80BFD0CA11A31CD6" modified="2017-03-15" version="1">MPTVIIYSLNADPLGATDVTVTGSFTVDVIDDDPNLEGNDATGPQLDVSGIPFFIGDSTNFQVFETYSGDVGGVPVTFTLVQWQFTPYMILTEGAVDVGETIENTNNSIIPAPPDPLEDLPDYVCFADGTLIDTPNGPKPVEALEVGDLVLTASGLPKPITWIGRRRLDSDALTQKPHLRPIEFEADALGPGRPSKTVRLSPQHRVAVTSEMCQVYFGNADVFASAKSLVENKKITIDEDIRTVTYHHILLDQHDLISSSDLWVETLFLGDATVEMLPRWTLATLQRLSKSRSGVPFTKLETALPVLKSYEVDVVRDSLSPYEPAVAPSVGAAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SGJ5</accession>
    <name>A0A1M5SGJ5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein family UPF0029</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2956</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the IMPACT family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37585.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2956"/>
    <dbReference type="EnsemblBacteria" id="SHH37585">
        <property type="protein sequence ID" value="SHH37585"/>
        <property type="gene ID" value="SAMN05444003_2956"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023582">
        <property type="entry name" value="Impact"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001498">
        <property type="entry name" value="Impact_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036956">
        <property type="entry name" value="Impact_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020569">
        <property type="entry name" value="UPF0029_Impact_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16301">
        <property type="entry name" value="PTHR16301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01205">
        <property type="entry name" value="UPF0029"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00910">
        <property type="entry name" value="UPF0029"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UPF0029" evidence="2">
        <location>
            <begin position="20"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007665"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH37585.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="125" mass="13598" checksum="65339BC765B86C53" modified="2017-03-15" version="1">MPPKGHLGGMKIIDNALSDRGSKYAVSGGPVTTAEEATAFIKQLCRAKKFAKASHNTWAVILPDGTPIKNDDGESGAGMVILRMLEREDLTGHIIVVTRWFGGTKLGGDRFRRVKDAVRVYLDDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SHJ5</accession>
    <name>A0A1M5SHJ5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Acetylornithine aminotransferase</fullName>
            <shortName evidence="2">ACOAT</shortName>
            <ecNumber evidence="2">2.6.1.11</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">argD</name>
        <name evidence="4" type="ORF">SAMN05444003_2963</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>2-oxoglutarate + N(2)-acetyl-L-ornithine = L-glutamate + N-acetyl-L-glutamate 5-semialdehyde</text>
            <dbReference type="Rhea" id="RHEA:18049"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:29123"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:57805"/>
            <dbReference type="EC" id="2.6.1.11"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
        <text evidence="2">Binds 1 pyridoxal phosphate per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-acid biosynthesis; L-arginine biosynthesis; N(2)-acetyl-L-ornithine from L-glutamate: step 4/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="2">May also have succinyldiaminopimelate aminotransferase activity, thus carrying out the corresponding step in lysine biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.11" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37748.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902390.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2963"/>
    <dbReference type="EnsemblBacteria" id="SHH37748">
        <property type="protein sequence ID" value="SHH37748"/>
        <property type="gene ID" value="SAMN05444003_2963"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00109"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003992">
        <property type="term" value="F:N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006526">
        <property type="term" value="P:arginine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00610">
        <property type="entry name" value="OAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01107">
        <property type="entry name" value="ArgD_aminotrans_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004636">
        <property type="entry name" value="AcOrn/SuccOrn_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005814">
        <property type="entry name" value="Aminotrans_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00202">
        <property type="entry name" value="Aminotran_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000521">
        <property type="entry name" value="Transaminase_4ab_Lys_Orn"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00707">
        <property type="entry name" value="argD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00600">
        <property type="entry name" value="AA_TRANSFER_CLASS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="2 4" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="2" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 2 3" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="2">
        <location>
            <begin position="96"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="2">
        <location>
            <begin position="213"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="128"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="131"/>
        </location>
        <ligand>
            <name>N(2)-acetyl-L-ornithine</name>
            <dbReference type="ChEBI" id="CHEBI:57805"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="270"/>
        </location>
        <ligand>
            <name>N(2)-acetyl-L-ornithine</name>
            <dbReference type="ChEBI" id="CHEBI:57805"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="271"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="2">
        <location>
            <position position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01107"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH37748.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="387" mass="40595" checksum="AABF861F71E95B33" modified="2017-03-15" version="1">MISSVLPTYNRAPLTFVSGEGSWLVEKDGRRFLDFGAGIAVNALGHAHPVLTKALTDQAGQVWHLSNLYEIPAQKQLADKLVDLTFADTVFFTNSGTESCELAVKMARKYWFDKGEDRSEIIAFEGSFHGRSSAGIAAAGSEKMTKGFGPLLPGFTHLPFGDHDVLNAAISDKTAAVLVEPVQGEGGIRPLPDACLKGLRDLCDAHGVLLILDEVQCGVGRTGKLFAHEWAGISPDIMMVAKGIGGGFPLGAVLATEDAASGMTAGTHGSTYGGNPLGCAVGNAVIDIVTEPNFLEEVNRKAGLLRQKLEGLVADNPDVFDSVRGSGLMLGLVCKAANTDVVAAGYAQELLTVPAADNTVRLLPPLNLSDEELGEAVSRLDAAAKSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SI08</accession>
    <name>A0A1M5SI08_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2983</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38176.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902417.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH38176">
        <property type="protein sequence ID" value="SHH38176"/>
        <property type="gene ID" value="SAMN05444003_2983"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH38176.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="65" mass="7345" checksum="7D9E3FDEDE72955A" modified="2017-03-15" version="1">MTKDFIAIARNRRLVALTEMRTRQEDGASITKIHTLPDLTPTHVDAVFRTKRKPQPVFEAAQLAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SUA3</accession>
    <name>A0A1M5SUA3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3114</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42047.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902667.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH42047">
        <property type="protein sequence ID" value="SHH42047"/>
        <property type="gene ID" value="SAMN05444003_3114"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH42047.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="69" mass="7962" checksum="53A8F6FEA23430E2" modified="2017-03-15" version="1">MAEIFDSKRIYFPEDPELRILGTVEKLAQWRHFNRGPAFIRIGRRIGYHGSDLNAYLSAQRVDPSNEAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SV53</accession>
    <name>A0A1M5SV53_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">2-amino-3-ketobutyrate coenzyme A ligase</fullName>
            <shortName evidence="1">AKB ligase</shortName>
            <ecNumber evidence="1">2.3.1.29</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Glycine acetyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">kbl</name>
        <name evidence="3" type="ORF">SAMN05444003_3103</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>acetyl-CoA + glycine = (2S)-2-amino-3-oxobutanoate + CoA</text>
            <dbReference type="Rhea" id="RHEA:20736"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:78948"/>
            <dbReference type="EC" id="2.3.1.29"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
        <text evidence="1">Binds 1 pyridoxal phosphate per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid degradation; L-threonine degradation via oxydo-reductase pathway; glycine from L-threonine: step 2/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.29" evidence="1"/>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41873.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902652.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3103"/>
    <dbReference type="EnsemblBacteria" id="SHH41873">
        <property type="protein sequence ID" value="SHH41873"/>
        <property type="gene ID" value="SAMN05444003_3103"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00046">
        <property type="reaction ID" value="UER00506"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008890">
        <property type="term" value="F:glycine C-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019518">
        <property type="term" value="P:L-threonine catabolic process to glycine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00985">
        <property type="entry name" value="2am3keto_CoA_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011282">
        <property type="entry name" value="2am3keto_CoA_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001917">
        <property type="entry name" value="Aminotrans_II_pyridoxalP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01822">
        <property type="entry name" value="2am3keto_CoA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00599">
        <property type="entry name" value="AA_TRANSFER_CLASS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="1" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="2">
        <location>
            <begin position="43"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="1">
        <location>
            <begin position="111"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="1">
        <location>
            <begin position="210"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="1">
        <location>
            <begin position="241"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="region of interest" description="Pyridoxal phosphate binding; shared with dimeric partner" evidence="1">
        <location>
            <begin position="274"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="136"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="185"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="368"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="1">
        <location>
            <position position="244"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00985"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH41873.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="398" mass="43595" checksum="00B8C11C5B2911B6" modified="2017-03-15" version="1">MTTKFLAHLNAELSGLKDAGLYKSERIIASRQAGTVALESGREVVNLCANNYLGLSDNAELITAGQDALERYGYGMSSVRFICGTQEEHTELERRISGFLGFEDTILYSSCFDANAGLFETLLGPEDAIISDALNHASIIDGVRLCKAKRYRYANSDMDDLEVQLQAATEVGARFKLIATDGVFSMDGYIARLSEICDLADRYDAMVMVDDSHAVGFVGATGRGSIEHCDVMGRVDIVTGTLGKALGGASGGYTCAKRDVVDWLRQRSRPYLFSNTLAPVIASTTLMVIDMLEASTERRDRLMDNASHFRARMGAAGFDLLPGEHPIIPVMLRDPKLAQDMAARLDKKGVFVAPFSFPVVPRGHDRIRTQMSAAHSREELDRAIDAFIEVGRDMELIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T2V2</accession>
    <name>A0A1M5T2V2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Phenylpropionate dioxygenase, large terminal subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_3210</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45071.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902849.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3210"/>
    <dbReference type="EnsemblBacteria" id="SHH45071">
        <property type="protein sequence ID" value="SHH45071"/>
        <property type="gene ID" value="SAMN05444003_3210"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.102.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017941">
        <property type="entry name" value="Rieske_2Fe-2S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036922">
        <property type="entry name" value="Rieske_2Fe-2S_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015879">
        <property type="entry name" value="Ring_hydroxy_dOase_asu_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001663">
        <property type="entry name" value="Rng_hydr_dOase-A"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43756">
        <property type="entry name" value="PTHR43756"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00355">
        <property type="entry name" value="Rieske"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00848">
        <property type="entry name" value="Ring_hydroxyl_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00090">
        <property type="entry name" value="RNGDIOXGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50022">
        <property type="entry name" value="SSF50022"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51296">
        <property type="entry name" value="RIESKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="7" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rieske" evidence="6">
        <location>
            <begin position="43"/>
            <end position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH45071.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="382" mass="43278" checksum="01929ED6B9BAA3CA" modified="2017-03-15" version="1">MNKHEHLSSVLQSVNTANGLPNAHYIDPDVFEEEKAAVLFANWSGIGFGKDVPEVGDAMPVDFLGMPLLIVRNKQGEVAVFQNTCRHRGMILVDKPKKIGGVIRCPYHSWCYALNGDLHATPHVGGPGHNMHEDIYKSDLGLLRIRSYVWRDVIFVNVDGQALEFEEVHADLMARWAEFEVPVHHGGPESSFKLEVATNWKLAVENYCESYHLPWVHPGLNSYSRLEDHYNIEELGKYSGQGTLVYRQLKGEGGEMFPDFEGLSEKWDEGAEYITVYPNVLLGVQRDHAFAIVLEPKACEQTVEHIELYYAQSSEDTPELADLRVKNAEQWKVVFEEDIFVVEGMQKGRHGAYFDGGRFSPAMDGPTHNFHHWVATQLTNRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T3M0</accession>
    <name>A0A1M5T3M0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8 9">Catalase-peroxidase</fullName>
            <shortName evidence="8">CP</shortName>
            <ecNumber evidence="8 9">1.11.1.21</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Peroxidase/catalase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">katG</name>
        <name evidence="11" type="ORF">SAMN05444003_3215</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8 9">
            <text>2 H2O2 = 2 H2O + O2</text>
            <dbReference type="Rhea" id="RHEA:20309"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:16240"/>
            <dbReference type="EC" id="1.11.1.21"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8 9">
            <text>AH2 + H2O2 = A + 2 H2O</text>
            <dbReference type="Rhea" id="RHEA:30275"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16240"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="EC" id="1.11.1.21"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>heme b</name>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
        </cofactor>
        <text evidence="8">Binds 1 heme b (iron(II)-protoporphyrin IX) group per dimer.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer or homotetramer.</text>
    </comment>
    <comment type="PTM">
        <text evidence="8">Formation of the three residue Trp-Tyr-Met cross-link is important for the catalase, but not the peroxidase activity of the enzyme.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8 9">Belongs to the peroxidase family. Peroxidase/catalase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="1.11.1.21" evidence="8 9"/>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902859.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3215"/>
    <dbReference type="EnsemblBacteria" id="SHH45190">
        <property type="protein sequence ID" value="SHH45190"/>
        <property type="gene ID" value="SAMN05444003_3215"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004096">
        <property type="term" value="F:catalase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042744">
        <property type="term" value="P:hydrogen peroxide catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006979">
        <property type="term" value="P:response to oxidative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01961">
        <property type="entry name" value="Catal_peroxid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000763">
        <property type="entry name" value="Catalase_peroxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002016">
        <property type="entry name" value="Haem_peroxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010255">
        <property type="entry name" value="Haem_peroxidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019794">
        <property type="entry name" value="Peroxidases_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019793">
        <property type="entry name" value="Peroxidases_heam-ligand_BS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30555">
        <property type="entry name" value="PTHR30555"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00141">
        <property type="entry name" value="peroxidase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00460">
        <property type="entry name" value="BPEROXIDASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00458">
        <property type="entry name" value="PEROXIDASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48113">
        <property type="entry name" value="SSF48113"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00198">
        <property type="entry name" value="cat_per_HPI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00435">
        <property type="entry name" value="PEROXIDASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00436">
        <property type="entry name" value="PEROXIDASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50873">
        <property type="entry name" value="PEROXIDASE_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 8 9" id="KW-0349">Heme</keyword>
    <keyword evidence="7 8 9" id="KW-0376">Hydrogen peroxide</keyword>
    <keyword evidence="6 8 9" id="KW-0408">Iron</keyword>
    <keyword evidence="4 8 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 8 9" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2 8 9" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PEROXIDASE_4" evidence="10">
        <location>
            <begin position="130"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="8">
        <location>
            <position position="97"/>
        </location>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="8">
        <location>
            <position position="260"/>
        </location>
        <ligand>
            <name>heme b</name>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="8">
        <location>
            <position position="93"/>
        </location>
    </feature>
    <feature type="cross-link" description="Tryptophyl-tyrosyl-methioninium (Tyr-Met) (with Trp-96)" evidence="8">
        <location>
            <begin position="219"/>
            <end position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01961"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003451"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50873"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH45190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="724" mass="78651" checksum="D8B837D7EA82BA79" modified="2017-03-15" version="1">MDGSDVNSAGKCPVMHSAGATSTNQQWWPNQLNLNILRQNAPQSDPMGDDFNYAEEFKTLDLEAVRQDLYALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRTYDGRGGGGTGQQRFAPLNSWPDNGNLDKARRLLWPIKQKYGRKLSWADLMILAGNAALESMGFETFGFAGGRADVWEPEEDVYWGPETEWLTDKRYSGERELANPLGAVEMGLIYVNPQGPNGEADPLKSAFDVRDTFARMAMNDEETVALVAGGHTFGKGHGAGDPAHVGPEPEGAPVEAMGFGWLSTHASGKGGDTITSGFEGAWTPTPTQWDMSYFDTLFGHEWEISEAPSGALRWVPVSEEGKQAAPAADGSSKRETVMMTTADMAMRMDPAYEKISRDFHANPDKFADAFARAWYKLTHRDMGPYVRGLGSLVPSEPLIWQDPVPAVTHDLIDDADAAALKAKILESGLSVGELVSTAWASASTFRGSDMRGGANGARIALAPMKDWEVNAPAQLAKVLSTLESIRSDFGKEISLADTIVLAGAAGVEKAAANAGHTITVPFTPGRTDATDEMTDADSIEMLNPVADGFRNYVSDRAYRPVADHLIDRAQLLTLTAPEMTVLIGGLRMLDLNHDGSKHGVFTEKSETLSADFFVNVLDMSTAWSKAEDGSFEGKDRATGAAKWTATEVDLVFGSNSVLRALAEVYASDDASEKFVSDFVAAWTKVMDLDRFDLIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T3T8</accession>
    <name>A0A1M5T3T8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">4-hydroxy-tetrahydrodipicolinate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3222</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the DapA family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45352.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902871.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3222"/>
    <dbReference type="EnsemblBacteria" id="SHH45352">
        <property type="protein sequence ID" value="SHH45352"/>
        <property type="gene ID" value="SAMN05444003_3222"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002220">
        <property type="entry name" value="DapA-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12128">
        <property type="entry name" value="PTHR12128"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00701">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001365">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00146">
        <property type="entry name" value="DHPICSNTHASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01130">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR001365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH45352.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="302" mass="32864" checksum="C2869288FF71D982" modified="2017-03-15" version="1">MQFEGIYTPIVTPYHDDFTLNALVLAQTVEHLIASGVHGIIVAGSTGEYYAQSEDERVEMMGLCADLIKGRVPMIVGTGAIRTEDSIRFAQAAQAVGADALLVTTPPYAYPTGREIALHALAVDRAANLPVMLYNYPGRMSVNMDEETLDRLGRSPNFCAIKESSGDINRLHMLARDYPHIALSCGMDDQALEFFAWGARSWVCAGSNFAPEAHIALYQACAVEGDFPKGRAIMSAMLPLMRVLEQGGKFVQCIKYGLTLRGIDAGPPRKPLQPLNKDDKRELAEVIRTMNTTIDQITGAGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T5N3</accession>
    <name>A0A1M5T5N3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">N-acetylglucosamine 6-phosphate deacetylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_3246</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
        <text evidence="6">Binds 1 divalent metal cation per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the metallo-dependent hydrolases superfamily. NagA family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45900.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902907.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3246"/>
    <dbReference type="EnsemblBacteria" id="SHH45900">
        <property type="protein sequence ID" value="SHH45900"/>
        <property type="gene ID" value="SAMN05444003_3246"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008448">
        <property type="term" value="F:N-acetylglucosamine-6-phosphate deacetylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006044">
        <property type="term" value="P:N-acetylglucosamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003764">
        <property type="entry name" value="GlcNAc_6-P_deAcase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011059">
        <property type="entry name" value="Metal-dep_hydrolase_composite"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11113:SF14">
        <property type="entry name" value="PTHR11113:SF14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01979">
        <property type="entry name" value="Amidohydro_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF038994">
        <property type="entry name" value="NagA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidohydro-rel" evidence="7">
        <location>
            <begin position="46"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="212"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="299"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="4">
        <location>
            <position position="267"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="122"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="133"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="188"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="209"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="220"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="243"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRNR" id="PIRNR038994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR038994-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR038994-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR038994-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH45900.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="375" mass="39627" checksum="0360C0CAB10E19F8" modified="2017-03-15" version="1">MNTRWITFQHVFDGERVHDSASVRIEDGHIAELDFGVRTDLSHSGYLVPGYLDLQVNGGGGVQLNATPTVDAMAQIAEAHRCFGTVGILPTVITDAPEVLEKAATAALSAKGRTGILGIHIEGPHLSRNRRGTHKSDFIRRFAPRTLEIVENLRAAGVTVMITVAPEEMDFADIAKLSAMGAIVSVGHTDASADQIETAVAAGACCATHLFNAMSPMTSREPGAVGAVLHSGIHFGIICDGFHVDDRMISLALRAGSNPDAAFLVSDSMATVGGPDCFELYGQVVRLENGRLINGEGNLAGAHITQAQGVKRLVQEIGVPHERAFKMATTVPATVIGRPDLATLVGRSICDVLVLNETLDVTDNAVLAPQFDAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L2N3</accession>
    <name>A0A1M5L2N3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="12">Threonine--tRNA ligase</fullName>
            <ecNumber evidence="12">6.1.1.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="12">Threonyl-tRNA synthetase</fullName>
            <shortName evidence="12">ThrRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="primary">thrS</name>
        <name evidence="15" type="ORF">SAMN05444003_0060</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 12">
            <text>ATP + L-threonine + tRNA(Thr) = AMP + diphosphate + H(+) + L-threonyl-tRNA(Thr)</text>
            <dbReference type="Rhea" id="RHEA:24624"/>
            <dbReference type="Rhea" id="RHEA-COMP:9670"/>
            <dbReference type="Rhea" id="RHEA-COMP:9704"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57926"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78534"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="12">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="12">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="12">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="12">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="12">Belongs to the class-II aminoacyl-tRNA synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.3" evidence="12"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898399.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0060"/>
    <dbReference type="EnsemblBacteria" id="SHG59190">
        <property type="protein sequence ID" value="SHG59190"/>
        <property type="gene ID" value="SAMN05444003_0060"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004829">
        <property type="term" value="F:threonine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006435">
        <property type="term" value="P:threonyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00771">
        <property type="entry name" value="ThrRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.800">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00184">
        <property type="entry name" value="Thr_tRNA_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002314">
        <property type="entry name" value="aa-tRNA-synt_IIb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004154">
        <property type="entry name" value="Anticodon-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036621">
        <property type="entry name" value="Anticodon-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004095">
        <property type="entry name" value="TGS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012676">
        <property type="entry name" value="TGS-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002320">
        <property type="entry name" value="Thr-tRNA-ligase_IIa"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018163">
        <property type="entry name" value="Thr/Ala-tRNA-synth_IIc_edit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033728">
        <property type="entry name" value="ThrRS_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012947">
        <property type="entry name" value="tRNA_SAD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11451">
        <property type="entry name" value="PTHR11451"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03129">
        <property type="entry name" value="HGTP_anticodon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02824">
        <property type="entry name" value="TGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00587">
        <property type="entry name" value="tRNA-synt_2b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07973">
        <property type="entry name" value="tRNA_SAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01047">
        <property type="entry name" value="TRNASYNTHTHR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00863">
        <property type="entry name" value="tRNA_SAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55186">
        <property type="entry name" value="SSF55186"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81271">
        <property type="entry name" value="SSF81271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00418">
        <property type="entry name" value="thrS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51880">
        <property type="entry name" value="TGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11 12 15" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="8 12" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 12" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 12" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 12" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10 12" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 12" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 12" id="KW-0820">tRNA-binding</keyword>
    <keyword evidence="7 12" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="TGS" evidence="14">
        <location>
            <begin position="1"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="domain" description="AA_TRNA_LIGASE_II" evidence="13">
        <location>
            <begin position="247"/>
            <end position="544"/>
        </location>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="344"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="395"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="521"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000070"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00184"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS51880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="SHG59190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="648" mass="73935" checksum="3EFA4D13F2AFF402" modified="2017-03-15" version="1">MAQISLTLPDGNSRSYDAGVTPADVAADISNSLRKKAISATVNGQHWDLQWPIHEDSSIALHTMKDEEQALELVRHDLAHIMARAVQEIWPDVQVTIGPVIKDGWYYDFDRKDPFVPEDLALIEKKMKEIINKRDEVTTEIWERDKAIQYYKDRGEPYKVELIESIPGDEPLRMYWHGDWQDLCRGPHLQNTGQVPADGFRLMSIAGAYWRGDSDRPMLQRIYGAAFTNKEGLRKHLNMLEEAAKRDHRKLGKEMDLFHMQEEAPGQVFWHPNGWTVYTELQDYMRRRQRAGGYQEVNTPQVVDRKLWEQSGHWDKYQEHMFIVEVDEEHAREKAVNALKPMNCPCHVQVYNQGLKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDGHIFCREDQIESETAEFIRFLSTVYKDLGFENFSVKFSDRPEKRAGSDEVWDKAEAALLAATRAAGIEPTLNPGEGAFYGPKLEFVLTDAIGRDWQCGTHQVDFVLPERLDATYVGEDGSKHRPVMLHRATLGSFERFIGILIEEHAGKLPFWLAPRQVVVATIISDADDYANEVVAALKAAGVRAETDLRNEKINYKVREHSHGKVPVILAIGAREVEEKTVSVRRLGENKTSVTSLDEIVTELAKSATPPDRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L368</accession>
    <name>A0A1M5L368_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Polyhydroxyalkanoate synthesis repressor PhaR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0073</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59436.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900327.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0073"/>
    <dbReference type="EnsemblBacteria" id="SHG59436">
        <property type="protein sequence ID" value="SHG59436"/>
        <property type="gene ID" value="SAMN05444003_0073"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012909">
        <property type="entry name" value="PHA_DNA-bd_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010134">
        <property type="entry name" value="PHA_reg_PhaR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007897">
        <property type="entry name" value="PHB_accumulat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05233">
        <property type="entry name" value="PHB_acc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07879">
        <property type="entry name" value="PHB_acc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01848">
        <property type="entry name" value="PHA_reg_PhaR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PHB_acc_N" evidence="3">
        <location>
            <begin position="9"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="domain" description="PHB_acc" evidence="2">
        <location>
            <begin position="73"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="143"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="153"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05233"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF07879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG59436.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="180" mass="19992" checksum="D8437E07E2C28475" modified="2017-03-15" version="1">MAAAEKPLLIKRYASRRLYNTETSDYVTLEDIATFIREGREVQIVDLKSGDDLTRQYLLQIIAEHESRGESVLPVDVLTDLVRSYTSQAASVVPEFLQASFEMLREGQSKAMENMTSMNPMASMPGFDAMRAQQEAFFKAMTGGMMSGASSDEKPESGDDLSDIKDQLASLQEKLSKMGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L3I6</accession>
    <name>A0A1M5L3I6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Glutamine synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0081</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the glutamine synthetase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59577.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898423.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0081"/>
    <dbReference type="EnsemblBacteria" id="SHG59577">
        <property type="protein sequence ID" value="SHG59577"/>
        <property type="gene ID" value="SAMN05444003_0081"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004356">
        <property type="term" value="F:glutamate-ammonia ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006542">
        <property type="term" value="P:glutamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009399">
        <property type="term" value="P:nitrogen fixation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036651">
        <property type="entry name" value="Gln_synt_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014746">
        <property type="entry name" value="Gln_synth/guanido_kin_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008146">
        <property type="entry name" value="Gln_synth_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027303">
        <property type="entry name" value="Gln_synth_gly_rich_site"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00120">
        <property type="entry name" value="Gln-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01230">
        <property type="entry name" value="Gln-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54368">
        <property type="entry name" value="SSF54368"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55931">
        <property type="entry name" value="SSF55931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00181">
        <property type="entry name" value="GLNA_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0535">Nitrogen fixation</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Gln-synt_C" evidence="4">
        <location>
            <begin position="114"/>
            <end position="369"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU000384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM01230"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG59577.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="450" mass="50058" checksum="632D7425AE4F46D7" modified="2017-03-15" version="1">MSWRKKIPQAAQDYLEQNRLDEVECVVADLPGIARGKAVPAAKWEKQSHFHLPNSIFFQTITGGWGEAAGPEGFVEPDMVLKPDMNTATAAPWTDDGTLQVIHDAFTTDGKPVGFAPRNVLKRVVAAYKRAGFTPVVAPEMEFYLVARNTDPAKAIEPMMGRTGRPAAGRQAYSMTAVDDYGPVIDDIYEFAEIQGFEIDGITQEGGAGQLEINLLHGDPVDLADQVFYFKRLIKEAALKHDCFATFMAKPIEDEPGSAMHVHHSILDADGQNIFTGPQGGETDAFFYFIGGLQDYLPSVIAMLAPYVNSYRRYVRDHAAPINLEWGRDNRTTGIRIPISTPEARRIENRLAGMDSNPYLCIAASLACGLQGIRKEIRPDKRFKGDAYDGEDDIPVGLYTALDLFDEAKDLHKLLGEDFARVYSIVKRAEYDEFLQVISPWEREHLLLNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L3T8</accession>
    <name>A0A1M5L3T8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Amino acid ABC transporter substrate-binding protein, PAAT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0086</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59678.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898428.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0086"/>
    <dbReference type="EnsemblBacteria" id="SHG59678">
        <property type="protein sequence ID" value="SHG59678"/>
        <property type="gene ID" value="SAMN05444003_0086"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001638">
        <property type="entry name" value="Solute-binding_3/MltF_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00497">
        <property type="entry name" value="SBP_bac_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00062">
        <property type="entry name" value="PBPb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013019609" evidence="2">
        <location>
            <begin position="21"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="domain" description="PBPb" evidence="3">
        <location>
            <begin position="25"/>
            <end position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG59678.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="241" mass="25505" checksum="006940D1F299DB25" modified="2017-03-15" version="1">MKKLILSTALAAFAATGVYADGHAVVRLGTEGAYPPWNFINDAGEVDGFEREVGDELCARAELTCEWVTNEWDSIIPNLVSGNYDVIIAGMSITDERDEVIDFSEAYTQPDPSAYLGMSEDIDFDGGVIAAQTGTIQANYIASTGATLLEFATPEETIAAVKNGEADAVLADASYLAPIADSEADLSIVGPDVMLGGGVGLGVRESDTELREKLTAAIQSMKADGSLNELIVKWEIGVPFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L7A6</accession>
    <name>A0A1M5L7A6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">N-methylglutamate synthase subunit A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0140</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60846.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900333.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0140"/>
    <dbReference type="EnsemblBacteria" id="SHG60846">
        <property type="protein sequence ID" value="SHG60846"/>
        <property type="gene ID" value="SAMN05444003_0140"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017932">
        <property type="entry name" value="GATase_2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51278">
        <property type="entry name" value="GATASE_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glutamine amidotransferase type-2" evidence="1">
        <location>
            <begin position="2"/>
            <end position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG60846.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="309" mass="33314" checksum="77B4D2FB1BBCBEE5" modified="2017-03-15" version="1">MCGIVGLFLKDKSLEPKLGEMLSSMLITMTDRGPDSAGIAIYGGEANGKTKMAIQSDRPEQAFEKLDARLGKIMGCTVSSEVKSTHAVLEIPAGTTASARAALAELDPLIRVMSRGDSLEIYKEVGLPKDVAARFEIEKMSGSHGIGHTRMATESAVTTMGAHPFNTGDDQCLVHNGSLSNHNSLRRKLRREGVHIETENDTEVGAAYLTWKMQNGATLGEALESSLEDLDGFFTFVVGTKDGFGVVRDPIACKPAVMAETDQYVAFGSEYRALVDLPGIEDARVWEPEPATVYFWSHDAAPTSKEKAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L952</accession>
    <name>A0A1M5L952_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Phospho-N-acetylmuramoyl-pentapeptide-transferase</fullName>
            <ecNumber evidence="9">2.7.8.13</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">UDP-MurNAc-pentapeptide phosphotransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">mraY</name>
        <name evidence="10" type="ORF">SAMN05444003_0170</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the initial step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan: transfers peptidoglycan precursor phospho-MurNAc-pentapeptide from UDP-MurNAc-pentapeptide onto the lipid carrier undecaprenyl phosphate, yielding undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide, known as lipid I.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>di-trans,octa-cis-undecaprenyl phosphate + UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine = di-trans-octa-cis-undecaprenyl diphospho-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine + UMP</text>
            <dbReference type="Rhea" id="RHEA:28386"/>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
            <dbReference type="ChEBI" id="CHEBI:60392"/>
            <dbReference type="ChEBI" id="CHEBI:61386"/>
            <dbReference type="ChEBI" id="CHEBI:61387"/>
            <dbReference type="EC" id="2.7.8.13"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="9">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell membrane</location>
            <topology evidence="9">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the glycosyltransferase 4 family. MraY subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.7.8.13" evidence="9"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61506.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898538.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0170"/>
    <dbReference type="EnsemblBacteria" id="SHG61506">
        <property type="protein sequence ID" value="SHG61506"/>
        <property type="gene ID" value="SAMN05444003_0170"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008963">
        <property type="term" value="F:phospho-N-acetylmuramoyl-pentapeptide-transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051992">
        <property type="term" value="F:UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine:undecaprenyl-phosphate transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06852">
        <property type="entry name" value="GT_MraY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00038">
        <property type="entry name" value="MraY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000715">
        <property type="entry name" value="Glycosyl_transferase_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003524">
        <property type="entry name" value="PNAcMuramoyl-5peptid_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018480">
        <property type="entry name" value="PNAcMuramoyl-5peptid_Trfase_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22926">
        <property type="entry name" value="PTHR22926"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00953">
        <property type="entry name" value="Glycos_transf_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10555">
        <property type="entry name" value="MraY_sig1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00445">
        <property type="entry name" value="mraY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01347">
        <property type="entry name" value="MRAY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01348">
        <property type="entry name" value="MRAY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="3 9" id="KW-0132">Cell division</keyword>
    <keyword evidence="9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9" id="KW-0133">Cell shape</keyword>
    <keyword evidence="9" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9 10" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="27"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="69"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="97"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="130"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="169"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="200"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="239"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="263"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="288"/>
            <end position="311"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="338"/>
            <end position="357"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005583"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00038"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG61506.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="360" mass="38604" checksum="38D0240A9894E7F7" modified="2017-03-15" version="1">MLYWLTELSDGGDFFNLFRYITFRSGGAFFTALLFGFFFGPPLINVLRRKQGKGQPIREDGPEGHLAKAGTPTMGGLLIVGALLTSTLLWARWDNGYVWMVLFVTMSFALIGFADDYAKVSKQNTAGVPGRIRIALGLLIAAIAGYWAAQLHPIDLSNQLAVPVFKDVLINLGIFFIPFAMIVIVGAANAVNLTDGLDGLAIMPVMIASAALGIIAYFVGRVDFTASLGLHYVPGTGEMLVIVAGLIGGGLGFLWYNAPPAAVFMGDTGSLALGGALGAIAVASKHEIVLAIVGGLFVVEALSVIIQVFYFKATGKRVFLMAPIHHHYEKKGWAEPQIVIRFWIVSLILAMIGLATLKVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LFM5</accession>
    <name>A0A1M5LFM5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, GntR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0267</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63871.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898698.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0267"/>
    <dbReference type="EnsemblBacteria" id="SHG63871">
        <property type="protein sequence ID" value="SHG63871"/>
        <property type="gene ID" value="SAMN05444003_0267"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1410.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028978">
        <property type="entry name" value="Chorismate_lyase_/UTRA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011663">
        <property type="entry name" value="UTRA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07702">
        <property type="entry name" value="UTRA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00035">
        <property type="entry name" value="HTHGNTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00866">
        <property type="entry name" value="UTRA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64288">
        <property type="entry name" value="SSF64288"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="1">
        <location>
            <begin position="10"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG63871.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="238" mass="26464" checksum="6A813F9649F1AA71" modified="2017-03-15" version="1">MTQSATPQALPIYVQISERLIREIAAGHIADGARLPPEREMANELGVAVGTLRKALADLETKGMLERIQGSGNYVRHRPQVASVYAFFRLEKVGGGGLPTAEVLSVDRMKKPSDAPFFGLSSEGHRIRRLRHLDEDAIAVEEIWLDGGLQDRITRDDLSDSLYLYYREQLGVIVASVADEIGVGQVPDWADPRFGLDRGQACGYIERVSWDSAGQPVEFSRTWFDNNKARYMSRMGKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LHE4</accession>
    <name>A0A1M5LHE4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Sec-independent protein translocase protein TatA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">tatA</name>
        <name evidence="8" type="ORF">SAMN05444003_0274</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">The Tat system comprises two distinct complexes: a TatABC complex, containing multiple copies of TatA, TatB and TatC subunits, and a separate TatA complex, containing only TatA subunits. Substrates initially bind to the TatABC complex, which probably triggers association of the separate TatA complex to form the active translocon.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the TatA/E family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898707.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0274"/>
    <dbReference type="EnsemblBacteria" id="SHG64099">
        <property type="protein sequence ID" value="SHG64099"/>
        <property type="gene ID" value="SAMN05444003_0274"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033281">
        <property type="term" value="C:TAT protein transport complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008320">
        <property type="term" value="F:protein transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043953">
        <property type="term" value="P:protein transport by the Tat complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00236">
        <property type="entry name" value="TatA_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003369">
        <property type="entry name" value="TatA/B/E"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006312">
        <property type="entry name" value="TatA/E"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02416">
        <property type="entry name" value="TatA_B_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 7" id="KW-0653">Protein transport</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0811">Translocation</keyword>
    <keyword evidence="2 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1 7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="6"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG64099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="70" mass="7367" checksum="FA752768B180ECA0" modified="2017-03-15" version="1">MLNNIGLPGLLLIAVVVLVLFGRGKISSLMGEVGKGITAFKRGVDDGKQEIEDSLAEAKDVTPAEEKDKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LI96</accession>
    <name>A0A1M5LI96_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized conserved protein, DUF934 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0306</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64767.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898747.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0306"/>
    <dbReference type="EnsemblBacteria" id="SHG64767">
        <property type="protein sequence ID" value="SHG64767"/>
        <property type="gene ID" value="SAMN05444003_0306"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008318">
        <property type="entry name" value="UCP030820"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06073">
        <property type="entry name" value="DUF934"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG64767.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="136" mass="14931" checksum="3B0BD6F309925556" modified="2017-03-15" version="1">MSTIITDSGFASDDWAGNFVALDESAANDSDYGIDLGSDTSPEALAGLINAPMIRIDFPTSADGRGFTLAAMLRRAGFSGRLRAKGHVLADQYAMARRSGFDEVEIDDALAARQPEDQWLRRTDWRAHDYQSRMRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LIP3</accession>
    <name>A0A1M5LIP3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0312</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64888.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898759.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG64888">
        <property type="protein sequence ID" value="SHG64888"/>
        <property type="gene ID" value="SAMN05444003_0312"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG64888.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="120" mass="13783" checksum="E121A6F32735C5DB" modified="2017-03-15" version="1">MTEDLIELYQTYYVEGFRTNDISLIDKIVDYPITYIKDGEVSLRDTYPVDPAALKAELDWDHSTDWSFDVAGVNETTAHMVAKATRCRKDGSVIEKVHGFYAFRKTDAGWKMYVLADIVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LJ02</accession>
    <name>A0A1M5LJ02_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Queuine tRNA-ribosyltransferase</fullName>
            <ecNumber evidence="4">2.4.2.29</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Guanine insertion enzyme</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">tRNA-guanine transglycosylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">tgt</name>
        <name evidence="6" type="ORF">SAMN05444003_0319</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>7-aminomethyl-7-carbaguanine + guanosine(34) in tRNA = 7-aminomethyl-7-carbaguanosine(34) in tRNA + guanine</text>
            <dbReference type="Rhea" id="RHEA:24104"/>
            <dbReference type="Rhea" id="RHEA-COMP:10341"/>
            <dbReference type="Rhea" id="RHEA-COMP:10342"/>
            <dbReference type="ChEBI" id="CHEBI:16235"/>
            <dbReference type="ChEBI" id="CHEBI:58703"/>
            <dbReference type="ChEBI" id="CHEBI:74269"/>
            <dbReference type="ChEBI" id="CHEBI:82833"/>
            <dbReference type="EC" id="2.4.2.29"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="4">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4">tRNA modification; tRNA-queuosine biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer. Within each dimer, one monomer is responsible for RNA recognition and catalysis, while the other monomer binds to the replacement base PreQ1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the queuine tRNA-ribosyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.29" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65021.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0319"/>
    <dbReference type="EnsemblBacteria" id="SHG65021">
        <property type="protein sequence ID" value="SHG65021"/>
        <property type="gene ID" value="SAMN05444003_0319"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00392"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008479">
        <property type="term" value="F:queuine tRNA-ribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008616">
        <property type="term" value="P:queuosine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0101030">
        <property type="term" value="P:tRNA-guanine transglycosylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.105">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00168">
        <property type="entry name" value="Q_tRNA_Tgt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004803">
        <property type="entry name" value="TGT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036511">
        <property type="entry name" value="TGT-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002616">
        <property type="entry name" value="tRNA_ribo_trans-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01702">
        <property type="entry name" value="TGT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51713">
        <property type="entry name" value="SSF51713"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00430">
        <property type="entry name" value="Q_tRNA_tgt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00449">
        <property type="entry name" value="tgt_general"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0671">Queuosine biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <keyword evidence="3 4" id="KW-0819">tRNA processing</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="TGT" evidence="5">
        <location>
            <begin position="14"/>
            <end position="367"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="4">
        <location>
            <begin position="92"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="region of interest" description="RNA binding" evidence="4">
        <location>
            <begin position="247"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="4">
        <location>
            <position position="92"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="4">
        <location>
            <position position="266"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="146"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="189"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="216"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="304"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="306"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="309"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="335"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00168"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01702"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG65021.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="375" mass="41396" checksum="F0AF1EA8274BEF8D" modified="2017-03-15" version="1">MGGFSFEKLGQDGKARTGVIHTPKGDIRTPAFMPVGTAATVKAMMPESVAATGAEILLGNTYHLMLRPTAERINNLGGLHKFMNWSKPILTDSGGFQVMSLAGLRKLTEEGVTFQSHIDGSKHHLTPERSMEIQRLLGSDIVMCFDECPALPADRDRIAESMRLSMRWAQRSRDAFGDRLGYALFGIQQGGLEQDFREESAEALKSIGFDGYAIGGLAVGEGQDAMFGCLDFAPDQLPEDKPRYLMGVGKPDDIVGAVKRGVDMMDCVLPSRSGRTGQVFTRRGVINIKNARHADDPRPLDEHCTCPACRNYSRAYLHHVFRSNEMIAGMLLTWHNLHYFQEIMQGMRDAIAAGTFDAWEADFHAMRAQGDIDPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LJ11</accession>
    <name>A0A1M5LJ11_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Probable phosphoglycerate mutase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0323</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898768.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0323"/>
    <dbReference type="EnsemblBacteria" id="SHG65102">
        <property type="protein sequence ID" value="SHG65102"/>
        <property type="gene ID" value="SAMN05444003_0323"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006094">
        <property type="term" value="P:gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd07067">
        <property type="entry name" value="HP_PGM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013078">
        <property type="entry name" value="His_Pase_superF_clade-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029033">
        <property type="entry name" value="His_PPase_superfam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001345">
        <property type="entry name" value="PG/BPGM_mutase_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00300">
        <property type="entry name" value="His_Phos_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00855">
        <property type="entry name" value="PGAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53254">
        <property type="entry name" value="SSF53254"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00175">
        <property type="entry name" value="PG_MUTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0312">Gluconeogenesis</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG65102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="192" mass="21173" checksum="5492B959B4DFE9D6" modified="2017-03-15" version="1">MKNWPEVIVLRHGETVWNRDNRMQGALNSPLTETGRQQASRQGELLSQFDLSTDWVAFCSPQGRAFQTAGLSVALHIPFVRTDDRLREIGVGEWSGKFRSDLKVEGPSHDGPDGPIAMYEQAPGGEGFDALNLRCQSFLDDLKGPTVIVTHGITSRMLRINLLGLPRSELGKLPGGQGNLFHIKDGVQKEIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LJE1</accession>
    <name>A0A1M5LJE1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 8">Lon protease</fullName>
            <ecNumber evidence="7 8">3.4.21.53</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">ATP-dependent protease La</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">lon</name>
        <name evidence="15" type="ORF">SAMN05444003_0320</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7 8 11">
            <text>Hydrolysis of proteins in presence of ATP.</text>
            <dbReference type="EC" id="3.4.21.53"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="7 8">Homohexamer. Organized in a ring with a central cavity.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 7 8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="induction">
        <text evidence="7">By heat shock.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7 8 11 12">Belongs to the peptidase S16 family.</text>
    </comment>
    <dbReference type="EC" id="3.4.21.53" evidence="7 8"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65040.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898766.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0320"/>
    <dbReference type="EnsemblBacteria" id="SHG65040">
        <property type="protein sequence ID" value="SHG65040"/>
        <property type="gene ID" value="SAMN05444003_0320"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004176">
        <property type="term" value="F:ATP-dependent peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034605">
        <property type="term" value="P:cellular response to heat"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006515">
        <property type="term" value="P:protein quality control for misfolded or incompletely synthesized proteins"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.130.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01973">
        <property type="entry name" value="lon_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027543">
        <property type="entry name" value="Lon_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004815">
        <property type="entry name" value="Lon_bac/euk-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008269">
        <property type="entry name" value="Lon_proteolytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027065">
        <property type="entry name" value="Lon_Prtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003111">
        <property type="entry name" value="Lon_prtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046336">
        <property type="entry name" value="Lon_prtase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008268">
        <property type="entry name" value="Peptidase_S16_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015947">
        <property type="entry name" value="PUA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10046">
        <property type="entry name" value="PTHR10046"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05362">
        <property type="entry name" value="Lon_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02190">
        <property type="entry name" value="LON_substr_bdg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001174">
        <property type="entry name" value="Lon_proteas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00464">
        <property type="entry name" value="LON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88697">
        <property type="entry name" value="SSF88697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00763">
        <property type="entry name" value="lon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51787">
        <property type="entry name" value="LON_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51786">
        <property type="entry name" value="LON_PROTEOLYTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01046">
        <property type="entry name" value="LON_SER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="evidence at transcript level"/>
    <keyword evidence="5 7 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7 8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 8 11" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 7 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2 7 8" id="KW-0645">Protease</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7 8" id="KW-0720">Serine protease</keyword>
    <keyword evidence="6 7" id="KW-0346">Stress response</keyword>
    <feature type="domain" description="Lon N-terminal" evidence="14">
        <location>
            <begin position="9"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="domain" description="Lon proteolytic" evidence="13">
        <location>
            <begin position="589"/>
            <end position="770"/>
        </location>
    </feature>
    <feature type="active site" evidence="7 9 11">
        <location>
            <position position="676"/>
        </location>
    </feature>
    <feature type="active site" evidence="7 9 11">
        <location>
            <position position="719"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7 10">
        <location>
            <begin position="354"/>
            <end position="361"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01973"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRNR" id="PIRNR001174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR001174-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR001174-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU000591"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS51787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="SHG65040.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="801" mass="88119" checksum="1AF5287AF314BA3F" modified="2017-03-15" version="1">MNEPLSSSYPVLPLRDIVVFPHMIVPLFVGRDKSVRALEEVMQDDKQILLSSQMDPAEDDPQVDGIYRAGVLANVLQLLKLPDGTVKVLVEGRSRVRITEFVDNPNFFEATAESLEELPGNLEEVDALVRSVANEFERYAKVKKNIPEEAMAAVGETTEANKLADLVAGHLGIEVDQKQELLETLSVTDRLEKVFGLMQGEMSVLQVEKKIKTRVKSQMEKTQREYYLNEQMKAIQKELGDGEEGQNEVDELEAKIAETKLSKEAKDKVDAELKKLKNMSPMSAEATVVRNYLDWVLGVPWGVKSRTKKDLNKAQAILDDDHYGLEKVKERIVEYLAVQQRSKKLKGPIMCLVGPPGVGKTSLGKSVAKATGREFIRISLGGVRDESEIRGHRRTYIGSMPGKIIQALKKAKTTNPLILLDEIDKMGQDFRGDPASAMLEVLDPEQNSTFVDHYLEVEYDLSNVMFLTTANSYNMPGPLLDRMEIISLAGYTEDEKREIARQHLLPKVLKNHGLKEKEFSITDEALTKAIQLYTKEAGVRNLERELAKVARKAVTTIVKGDMDVIEVTADNLNDFLGVEKHRFGLAEKEDQVGVVTGLAWTSVGGELLNIEALRLPGKGRMKTTGKLGDVMKESIDAASSYVRSIAPEIGVKPTKFDTIDIHVHVPDGATPKDGPSAGLAMVTSIVSVLTGIPVRKDIAMTGEVSLRGNAMPIGGLKEKLLAALRGGIKTVLIPQENAKDLPEIPDNVKEGLEIITVTHVSEVLKHALVSQPEAIEWDEAAEEARLTSLKDGGDGVGAGVH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LL89</accession>
    <name>A0A1M5LL89_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="13">UvrABC system protein A</fullName>
            <shortName evidence="13">UvrA protein</shortName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">Excinuclease ABC subunit A</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="primary">uvrA</name>
        <name evidence="16" type="ORF">SAMN05444003_0359</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="13">The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.</text>
    </comment>
    <comment type="subunit">
        <text evidence="13">Forms a heterotetramer with UvrB during the search for lesions.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="13">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="13">Belongs to the ABC transporter superfamily. UvrA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65821.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900364.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0359"/>
    <dbReference type="EnsemblBacteria" id="SHG65821">
        <property type="protein sequence ID" value="SHG65821"/>
        <property type="gene ID" value="SAMN05444003_0359"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009380">
        <property type="term" value="C:excinuclease repair complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009381">
        <property type="term" value="F:excinuclease ABC activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006289">
        <property type="term" value="P:nucleotide-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009432">
        <property type="term" value="P:SOS response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00205">
        <property type="entry name" value="UvrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004602">
        <property type="entry name" value="UvrA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041552">
        <property type="entry name" value="UvrA_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041102">
        <property type="entry name" value="UvrA_inter"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17755">
        <property type="entry name" value="UvrA_DNA-bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17760">
        <property type="entry name" value="UvrA_inter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00630">
        <property type="entry name" value="uvra"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 13 14" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 13" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 13" id="KW-0227">DNA damage</keyword>
    <keyword evidence="6 13" id="KW-0228">DNA excision</keyword>
    <keyword evidence="12 13" id="KW-0234">DNA repair</keyword>
    <keyword evidence="11 13" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="10 13" id="KW-0267">Excision nuclease</keyword>
    <keyword evidence="2 13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 13 14" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 13" id="KW-0677">Repeat</keyword>
    <keyword evidence="13" id="KW-0742">SOS response</keyword>
    <keyword evidence="8 13" id="KW-0862">Zinc</keyword>
    <keyword evidence="7 13" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="ABC transporter" evidence="15">
        <location>
            <begin position="617"/>
            <end position="945"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="C4-type" evidence="13">
        <location>
            <begin position="748"/>
            <end position="774"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <begin position="34"/>
            <end position="41"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13 14">
        <location>
            <begin position="649"/>
            <end position="656"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="SHG65821.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="956" mass="106081" checksum="A7F07C70FEAF9268" modified="2017-03-15" version="1">MAELKNIEVRGAREHNLKNIDVDIPRDQLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLDMMEKPDVDHIAGLSPAISIEQKTTSKNPRSTVGTITEIYDYLRLLFARVGTPYSPATGLPIEAQQVQDMVDRVMTLEEGTRGYMLAPIIRDRKGEYRKEFLELRKQGFQRVKVDGEFYDLDEPPTLDKKFRHDIDVVVDRIVVREGIETRLADSFRTALDLADGICILETAPSEGDPERITFSENFACPVSGFTIPEIEPRLFSFNAPFGACPSCDGLGVELFFDEQLVVPDVTLKIADGALAPWRKGKSPYFLQTIEAIAKHYGFDKNSRWKDLDPKIQNVFLRGSGKEEIKFRYDEGGRVYQVERAFEGVIPNMERRYRETDSNWIREEFEQYQNNRHCGTCGGYRLRQEALAVKIGSHDALLHVGQVVEMSIKEAYDWCLTVPDNLTAQKNEIAKAILKEIRERLGFLNNVGLEYLTLSRNSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNDRLLTTLKNLRDQGNTVIVVEHDEEAIREADYVFDIGPGAGVHGGQVVAKGTPQQIMDHAGSVTGEYLVGTREIAVPAERRKGKGKSVEVIKATGNNLQNVTAEFPLGQFVCVTGVSGGGKSTLTIETLFKTASMKLNGARQTPAPCETIKGLEHLDKVIDIDQRPIGRTPRSNPATYTGAFTPIRDWFAGLPESKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVECETCKGARYNRETLEIKFKGKSIADVLNMTVEDAQEFFKAVPSIREKMDALMRVGLGYIKVGQQATTLSGGEAQRVKLSKELAKRSTGRTLYILDEPTTGLHFEDVRKLLEVLHELVDQGNSVIVIEHNLDVVKTADHIIDIGPEGGDGGGKIVATGIPEEVAQVAESHTGRYLKDILNPKRVAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LPT0</accession>
    <name>A0A1M5LPT0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protoporphyrinogen IX oxidase, menaquinone-dependent (Flavodoxin domain)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0413</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67061.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0413"/>
    <dbReference type="EnsemblBacteria" id="SHG67061">
        <property type="protein sequence ID" value="SHG67061"/>
        <property type="gene ID" value="SAMN05444003_0413"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026816">
        <property type="entry name" value="Flavodoxin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12724">
        <property type="entry name" value="Flavodoxin_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavodoxin_5" evidence="1">
        <location>
            <begin position="7"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG67061.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="181" mass="19838" checksum="5F5E5CB7ABC702EA" modified="2017-03-15" version="1">MANQRVLVTYAIGHGSTASVAGLIAEGFKDFVTDVDVLHIDAAANPNRYDAVVIGSPIRYDRCLRCANAYVEAHELALATRPVAYFFTCMALSVPSGNAQGRRYAERIAAQNRNVTPVCIGQFAGALDFEKFPGPMHLPVRLLLKILGVNSGDFLDPDAIRIWSHHCFASFQLKETKETKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LQN8</accession>
    <name>A0A1M5LQN8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phospholipase/carboxylesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0430</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67462.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898919.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0430"/>
    <dbReference type="EnsemblBacteria" id="SHG67462">
        <property type="protein sequence ID" value="SHG67462"/>
        <property type="gene ID" value="SAMN05444003_0430"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003140">
        <property type="entry name" value="PLipase/COase/thioEstase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02230">
        <property type="entry name" value="Abhydrolase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Abhydrolase_2" evidence="1">
        <location>
            <begin position="18"/>
            <end position="216"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02230"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG67462.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="221" mass="23858" checksum="1724E4E5942E3C29" modified="2017-03-15" version="1">MTRALTAGRKEPLSGELRSCVVFLHGYGANGADLLGLADPLAEHMPDTLFLAPDAPETIPGMPTGYQWFPIPWIDGSSEEEAAIGLRRAADDLNAFLDGVMVDEDLLPEQVMVLGFSQGTMMALHVLPRREDEVAGIVAFSGRLLEPELLADEVQCRPPVLLIHGDQDDVVPPQSLPQAAEALQEAGWKEVYAHIMKGTAHGIAPDGLQVALAFMRDRLGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LST2</accession>
    <name>A0A1M5LST2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Precorrin-6A/cobalt-precorrin-6A reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0428</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; adenosylcobalamin biosynthesis.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67413.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898915.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0428"/>
    <dbReference type="EnsemblBacteria" id="SHG67413">
        <property type="protein sequence ID" value="SHG67413"/>
        <property type="gene ID" value="SAMN05444003_0428"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00148"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016994">
        <property type="term" value="F:precorrin-6A reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003723">
        <property type="entry name" value="Precorrin-6x_reduct"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36925">
        <property type="entry name" value="PTHR36925"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02571">
        <property type="entry name" value="CbiJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00715">
        <property type="entry name" value="precor6x_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51014">
        <property type="entry name" value="COBK_CBIJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG67413.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="241" mass="26305" checksum="6E664093E0D2C626" modified="2017-03-15" version="1">MTLLLLGGTGDGKRIATRLVEQGVDLIISLAGATRSPDAMPAPTRVGGFGGAEEFEAYLDEAGISAVLDATHPYAHRITDRTAAICKARNMPHAIFHRPPWEPREGDRWIEIEHEEDAVSHIAKGQTVFLGTGRQTLEKFANLEGRRVICRQIDPPSKPFPFEGGEYLIGRPPFSTQQERSLFRSLSVDWLVVKNAGGEQSITKLLAARELGISVLMVKRPPVPDATIFSTVAEAVAWAAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LT23</accession>
    <name>A0A1M5LT23_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Glutaredoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_0460</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the glutaredoxin family. Monothiol subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898972.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0460"/>
    <dbReference type="EnsemblBacteria" id="SHG68136">
        <property type="protein sequence ID" value="SHG68136"/>
        <property type="gene ID" value="SAMN05444003_0460"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097573">
        <property type="term" value="F:glutathione oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd03028">
        <property type="entry name" value="GRX_PICOT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002109">
        <property type="entry name" value="Glutaredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033658">
        <property type="entry name" value="GRX_PICOT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014434">
        <property type="entry name" value="Monothiol_GRX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004480">
        <property type="entry name" value="Monothiol_GRX-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10293">
        <property type="entry name" value="PTHR10293"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00462">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005894">
        <property type="entry name" value="Monothiol_GRX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00365">
        <property type="entry name" value="TIGR00365"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 7" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="4 7" id="KW-0408">Iron</keyword>
    <keyword evidence="5 7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glutaredoxin" evidence="8">
        <location>
            <begin position="16"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="29"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR005894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR005894-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG68136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="119" mass="13121" checksum="E90B2DA6ABCC37B8" modified="2017-03-15" version="1">MSAQDQIKEIVTTNDVVLFMKGTKTMPQCGFSSRVAGVLNFMGVEYSDINVLADDEIRQGIKDYSDWPTIPQLYVKGEFVGGCDIITEMTLSGELDTMLEENGVAFDKEAADKIREANA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LUI3</accession>
    <name>A0A1M5LUI3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Iron-sulfur cluster assembly accessory protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0482</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the HesB/IscA family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68655.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899001.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0482"/>
    <dbReference type="EnsemblBacteria" id="SHG68655">
        <property type="protein sequence ID" value="SHG68655"/>
        <property type="gene ID" value="SAMN05444003_0482"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016226">
        <property type="term" value="P:iron-sulfur cluster assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.300.12">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000361">
        <property type="entry name" value="FeS_biogenesis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016092">
        <property type="entry name" value="FeS_cluster_insertion"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017870">
        <property type="entry name" value="FeS_cluster_insertion_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035903">
        <property type="entry name" value="HesB-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01521">
        <property type="entry name" value="Fe-S_biosyn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89360">
        <property type="entry name" value="SSF89360"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00049">
        <property type="entry name" value="TIGR00049"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01152">
        <property type="entry name" value="HESB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fe-S_biosyn" evidence="2">
        <location>
            <begin position="7"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006718"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01521"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG68655.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="108" mass="11412" checksum="82A5475FC071E354" modified="2017-03-15" version="1">MLTLPPKVTERAFERLAEIGASDQGKALRVAVEGGGCSGFQYEIDLDDVKDGDLVLEGAGEKVVIDDVSLPFLTEAVIDFTEELIGARFVINNPNATSSCGCGTSFSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LV35</accession>
    <name>A0A1M5LV35_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">dCTP deaminase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0491</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68856.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899017.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0491"/>
    <dbReference type="EnsemblBacteria" id="SHG68856">
        <property type="protein sequence ID" value="SHG68856"/>
        <property type="gene ID" value="SAMN05444003_0491"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008829">
        <property type="term" value="F:dCTP deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009394">
        <property type="term" value="P:2'-deoxyribonucleotide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010550">
        <property type="entry name" value="dCTP_deam_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036157">
        <property type="entry name" value="dUTPase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06559">
        <property type="entry name" value="DCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51283">
        <property type="entry name" value="SSF51283"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG68856.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="359" mass="39250" checksum="CFAA0AFB40D3AEA4" modified="2017-03-15" version="1">MTNGVLADHQIRDLIASGAISATQNIAEGQIQPASLDLRLDDVAYRVRASFLAGPNRTVGERLADFQMHAVELEGGAVLEKGCVYVVPLMERLSLPNGMTAAASAKSSIGRLDLLTRIITDRGEEFDRVPDGYDGPLYVEICPRSFSVVATPGQMLNQIIFRQGKTFMDDDALRALHAQTPIVDTDPVISDGLGFSVDLKPSEGTLVGYRAKPHTGVIDLRNLGHYDPSEYWEEVHTDQGWIILDPGAFYILVSREAIVIPPMQAAEMAPYLAMVGEFRVHYAGFFDPGFGYADAGGAGSRGVLEVRCHEAPFVLEHGQIVGRLVYEHMAAMPDALYGREIKSNYQGQGLKLSKHFRSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LX86</accession>
    <name>A0A1M5LX86_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Parvulin-like PPIase</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Peptidyl-prolyl cis-trans isomerase plp</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Rotamase plp</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_0531</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PpiC/parvulin rotamase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69714.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900377.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0531"/>
    <dbReference type="EnsemblBacteria" id="SHG69714">
        <property type="protein sequence ID" value="SHG69714"/>
        <property type="gene ID" value="SAMN05444003_0531"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046357">
        <property type="entry name" value="PPIase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000297">
        <property type="entry name" value="PPIase_PpiC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027304">
        <property type="entry name" value="Trigger_fact/SurA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00639">
        <property type="entry name" value="Rotamase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109998">
        <property type="entry name" value="SSF109998"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50198">
        <property type="entry name" value="PPIC_PPIASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0413">Isomerase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0697">Rotamase</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012296494" description="Parvulin-like PPIase" evidence="6">
        <location>
            <begin position="21"/>
            <end position="396"/>
        </location>
    </feature>
    <feature type="domain" description="PpiC" evidence="7">
        <location>
            <begin position="161"/>
            <end position="257"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00018370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00030642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00031484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG69714.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="396" mass="43456" checksum="EC0418F0C059D9AD" modified="2017-03-15" version="1">MRFRLVVTSLLFSCAATLAAAQGLFSPVITVDDKAITGYEIDQRIKLLEAFRTPGDLATLAREQLVEDRLKQTELERVGASISDEALQNELEQFAGRANLELEQFLNVLQQNGIAPETLSEFVTIGVIWRDYVRARFGSRVQITETDIDRAIGQVGDSGTGIEVLLSEIIIPAPPEREAEALSEAERISRLTSTSAFSAEAQRVSALPSRENGGRLGWLPIANYPTQIRNIILDLDNGEVTAPIPIPNGVALFQMRGVREVQRSRQTPNSIDFAAFYVGSAGEARAVAERVDTCDDLFGEAKGLPEEQLERDTLPVNEIPSDVALELARLDQDEVSTNLTRSNGQTTVVLMLCNRLYGEDETIDREAIRNQLRSQQLAGFADALLEDLRAAATIDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LX93</accession>
    <name>A0A1M5LX93_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Release factor glutamine methyltransferase</fullName>
            <shortName evidence="6">RF MTase</shortName>
            <ecNumber evidence="6">2.1.1.297</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">N5-glutamine methyltransferase PrmC</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Protein-(glutamine-N5) MTase PrmC</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Protein-glutamine N-methyltransferase PrmC</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">prmC</name>
        <name evidence="9" type="ORF">SAMN05444003_0527</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 6">Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>L-glutaminyl-[peptide chain release factor] + S-adenosyl-L-methionine = H(+) + N(5)-methyl-L-glutaminyl-[peptide chain release factor] + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42896"/>
            <dbReference type="Rhea" id="RHEA-COMP:10271"/>
            <dbReference type="Rhea" id="RHEA-COMP:10272"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30011"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:61891"/>
            <dbReference type="EC" id="2.1.1.297"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.297" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69631.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899056.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0527"/>
    <dbReference type="EnsemblBacteria" id="SHG69631">
        <property type="protein sequence ID" value="SHG69631"/>
        <property type="gene ID" value="SAMN05444003_0527"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102559">
        <property type="term" value="F:protein-(glutamine-N5) methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036009">
        <property type="term" value="F:protein-glutamine N-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018364">
        <property type="term" value="P:peptidyl-glutamine methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02126">
        <property type="entry name" value="RF_methyltr_PrmC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002052">
        <property type="entry name" value="DNA_methylase_N6_adenine_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004556">
        <property type="entry name" value="HemK-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040758">
        <property type="entry name" value="PrmC_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019874">
        <property type="entry name" value="Release_fac_Glu-N5_MeTfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007848">
        <property type="entry name" value="Small_mtfrase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05175">
        <property type="entry name" value="MTS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17827">
        <property type="entry name" value="PrmC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00536">
        <property type="entry name" value="hemK_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03534">
        <property type="entry name" value="RF_mod_PrmC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00092">
        <property type="entry name" value="N6_MTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6 9" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="4 6 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PrmC_N" evidence="8">
        <location>
            <begin position="5"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="domain" description="MTS" evidence="7">
        <location>
            <begin position="96"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="6">
        <location>
            <begin position="115"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="181"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="138"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="167"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="181"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF05175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF17827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG69631.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="277" mass="30108" checksum="80FC3CCEEC3D9F6F" modified="2017-03-15" version="1">MTGREALATATERLRAAGVPDAVNDARRLLQNAMDAPQFVLIDLDREMAGAQLSMFQDALNRREARVPMSHITGQREFYGRTFRVSSAVLDPRPDTETLIEVALRQPFERVLDLGTGSGCILATLLAERPNATGVGTDLSASALKVAEQNISELQLNERAKLIESDWLAKVDGSFDLIVSNPPYIALDEMEGLQPEVQNHEPRMALTDEGDGLSCYRAIISETGSYLSAGGRVVVEIGPTQGVAVSALMTEADLDQTEVIQDLDGRDRVVVGHKPHK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M094</accession>
    <name>A0A1M5M094_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Uridylate kinase</fullName>
            <shortName evidence="6">UK</shortName>
            <ecNumber evidence="6">2.7.4.22</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Uridine monophosphate kinase</fullName>
            <shortName evidence="6">UMP kinase</shortName>
            <shortName evidence="6">UMPK</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">pyrH</name>
        <name evidence="8" type="ORF">SAMN05444003_0580</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the reversible phosphorylation of UMP to UDP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>ATP + UMP = ADP + UDP</text>
            <dbReference type="Rhea" id="RHEA:24400"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
            <dbReference type="ChEBI" id="CHEBI:58223"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.22"/>
        </reaction>
    </comment>
    <comment type="activity regulation">
        <text evidence="6">Allosterically activated by GTP. Inhibited by UTP.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 6">Pyrimidine metabolism; CTP biosynthesis via de novo pathway; UDP from UMP (UMPK route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homohexamer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 6">Belongs to the UMP kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.22" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70774.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899131.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0580"/>
    <dbReference type="EnsemblBacteria" id="SHG70774">
        <property type="protein sequence ID" value="SHG70774"/>
        <property type="gene ID" value="SAMN05444003_0580"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00159">
        <property type="reaction ID" value="UER00275"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033862">
        <property type="term" value="F:UMP kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044210">
        <property type="term" value="P:'de novo' CTP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04254">
        <property type="entry name" value="AAK_UMPK-PyrH-Ec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01220_B">
        <property type="entry name" value="PyrH_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036393">
        <property type="entry name" value="AceGlu_kinase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001048">
        <property type="entry name" value="Asp/Glu/Uridylate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011817">
        <property type="entry name" value="Uridylate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015963">
        <property type="entry name" value="Uridylate_kinase_bac"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00696">
        <property type="entry name" value="AA_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005650">
        <property type="entry name" value="Uridylate_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53633">
        <property type="entry name" value="SSF53633"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02075">
        <property type="entry name" value="pyrH_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0021">Allosteric enzyme</keyword>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 8" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 6" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="AA_kinase" evidence="7">
        <location>
            <begin position="11"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="region of interest" description="Involved in allosteric activation by GTP" evidence="6">
        <location>
            <begin position="23"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="15"/>
            <end position="18"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="57"/>
        </location>
        <ligand>
            <name>UMP</name>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="58"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="62"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="77"/>
        </location>
        <ligand>
            <name>UMP</name>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="138"/>
            <end position="145"/>
        </location>
        <ligand>
            <name>UMP</name>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="165"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="171"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="174"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001018"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004791"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01220"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00696"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG70774.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="241" mass="26159" checksum="ACE58C81E0866F70" modified="2017-03-15" version="1">MSATSDTTYNRVMLKISGEALMGDAGFGLHPPTVERIAKEVKSVHDMGVEICMVIGGGNIFRGLQGSAQGMERTTADYMGMLATVMNALAMQSALEGLGIHTRVISAIPMDQVCEPYIRRRAVRHLEKKRVCIFAAGTGNPYFTTDTAATLRANEMRCEAIFKGTKVDGVYDKDPAKHSDAQRYDKISYDEVLQKHLGVMDASAIALARDNHLPIVVFSLDEPGGFRGILAGDGTHTIVHD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M4V8</accession>
    <name>A0A1M5M4V8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Phosphate regulon transcriptional regulatory protein PhoB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_0639</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">This protein is a positive regulator for the phosphate regulon. Transcription of this operon is positively regulated by PhoB and PhoR when phosphate is limited.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72276.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899211.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0639"/>
    <dbReference type="EnsemblBacteria" id="SHG72276">
        <property type="protein sequence ID" value="SHG72276"/>
        <property type="gene ID" value="SAMN05444003_0639"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000156">
        <property type="term" value="F:phosphorelay response regulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006817">
        <property type="term" value="P:phosphate ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011879">
        <property type="entry name" value="Sig_transdc_resp-reg_PhoB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02154">
        <property type="entry name" value="PhoB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0592">Phosphate transport</keyword>
    <keyword evidence="6" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Response regulatory" evidence="8">
        <location>
            <begin position="7"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="9">
        <location>
            <begin position="132"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="7">
        <location>
            <begin position="132"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="6">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00013332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022592"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00024735"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG72276.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="229" mass="25870" checksum="1B5569F6A6293CDA" modified="2017-03-15" version="1">MSLPQPHVLVVEDEPAQREVLAYNIEAEGFRVSRAENGEDGLMMVNEDPPDVIVLDWMMPILSGIEVCRRLKISPETRNIPIIMLSAKSEEIDKVRGLETGADDYVVKPYSVSELMARVRTQLRRVRPSTVGQVLTYDDIVLDSETHRVTRGDEQLKLGPTEFRLLSTFMEKPGRVWSRDQLLDRVWGRDIYVDTRTVDVHVGRLRKVLTGNGGEDPVRTVRGAGYALG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M7N1</accession>
    <name>A0A1M5M7N1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0680</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73248.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899283.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG73248">
        <property type="protein sequence ID" value="SHG73248"/>
        <property type="gene ID" value="SAMN05444003_0680"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG73248.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="95" mass="10470" checksum="18B7590F70F1BB96" modified="2017-03-15" version="1">MRAFILLPVFGLMACDPMPTIPETDLPFFGDGYRTVGDQCRRVGEDAFTNQFLDDMADLVGCPEDMENLDVFALDTGGVEVARKDGFVLYSVPRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M800</accession>
    <name>A0A1M5M800_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Glutamyl-Q tRNA(Asp) synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0688</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="5">Belongs to the class-I aminoacyl-tRNA synthetase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73424.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899299.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0688"/>
    <dbReference type="EnsemblBacteria" id="SHG73424">
        <property type="protein sequence ID" value="SHG73424"/>
        <property type="gene ID" value="SAMN05444003_0688"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0110165">
        <property type="term" value="C:cellular anatomical entity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004812">
        <property type="term" value="F:aminoacyl-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006418">
        <property type="term" value="P:tRNA aminoacylation for protein translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001412">
        <property type="entry name" value="aa-tRNA-synth_I_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000924">
        <property type="entry name" value="Glu/Gln-tRNA-synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020058">
        <property type="entry name" value="Glu/Gln-tRNA-synth_Ib_cat-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00749">
        <property type="entry name" value="tRNA-synt_1c"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00987">
        <property type="entry name" value="TRNASYNTHGLU"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00178">
        <property type="entry name" value="AA_TRNA_LIGASE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 5" id="KW-0436">Ligase</keyword>
    <keyword evidence="2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="tRNA-synt_1c" evidence="6">
        <location>
            <begin position="3"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="domain" description="tRNA-synt_1c" evidence="6">
        <location>
            <begin position="186"/>
            <end position="282"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG73424.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="289" mass="32209" checksum="378C3F6D78E2CD68" modified="2017-03-15" version="1">MITRFAPSPTGPLHLGHAYSALLAHDMARSAGGTFLLRIEDIDQSRARPEWEAQIYDDLEWLGITWDTPVMRQSDRLGSYRDVLKQMWWDGLLYACSCNRRDIQEAASAPQEGAVNYGPDGIIYPGTCRNSVTDRDHYPSEPPPDKALRLDWSTFPKGALEGLSFQETGSGNDEKHRVDLDHLVRNVGDVVLARREMGTSYHLSVVLDDAAQGVTHVVRGEDLFDATHIHVALQAGMGLPTPVYNHHRLIRDNDGKRLAKRDDARAISKYRTDGASPNDIRALIGLTKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M9G7</accession>
    <name>A0A1M5M9G7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">YceI-like domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0711</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73898.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899341.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0711"/>
    <dbReference type="EnsemblBacteria" id="SHG73898">
        <property type="protein sequence ID" value="SHG73898"/>
        <property type="gene ID" value="SAMN05444003_0711"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.128.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007372">
        <property type="entry name" value="Lipid/polyisoprenoid-bd_YceI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036761">
        <property type="entry name" value="TTHA0802/YceI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027016">
        <property type="entry name" value="UCP029811"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04264">
        <property type="entry name" value="YceI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF029811">
        <property type="entry name" value="UCP029811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00867">
        <property type="entry name" value="YceI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101874">
        <property type="entry name" value="SSF101874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012680271" evidence="1">
        <location>
            <begin position="20"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="domain" description="YceI" evidence="2">
        <location>
            <begin position="21"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00867"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG73898.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="189" mass="20560" checksum="076F7CB81AAD7E24" modified="2017-03-15" version="1">MNFKSTIAAVALTTLPTFAAAWDLDPAESVVSFGLIKNDFIGEAHTFSGLSGTVDNDGNVDVAIDLTTLDTNIDIRNERMAEHVFRGLATAEISAEVDLDEIKKLRPGESTQMEIEATLNLLGNDVDVYLDAYILRVAPNRVMVSTNTAGYLSTEELGVDEGVDVLQGLENLDSITRVTPITLHLMFER</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M9H1</accession>
    <name>A0A1M5M9H1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative Holin-X, holin superfamily III</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0715</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG73984">
        <property type="protein sequence ID" value="SHG73984"/>
        <property type="gene ID" value="SAMN05444003_0715"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009937">
        <property type="entry name" value="Phage_holin_3_6"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07332">
        <property type="entry name" value="Phage_holin_3_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="32"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="59"/>
            <end position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG73984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="144" mass="15410" checksum="0F6749C1F5D567D9" modified="2017-03-15" version="1">MNVQMLEDLMKAFVASQFGDVKKRTAGVALEVVAFSFIGLAIAFLALSCFLWLSTFMEMWLAALTVSALVFGISGVLILVGRSMMQRKTIQQESDITSAIEALTSLTSGKVKADGENPTPEETNATIFGVALAAGVILGRAFKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MJL1</accession>
    <name>A0A1M5MJL1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Two-component system, NarL family, sensor kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_0873</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77674.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899577.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0873"/>
    <dbReference type="EnsemblBacteria" id="SHG77674">
        <property type="protein sequence ID" value="SHG77674"/>
        <property type="gene ID" value="SAMN05444003_0873"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033480">
        <property type="entry name" value="sCache_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011712">
        <property type="entry name" value="Sig_transdc_His_kin_sub3_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017171">
        <property type="entry name" value="Sig_transdc_His_kinase_MctS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07730">
        <property type="entry name" value="HisKA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17200">
        <property type="entry name" value="sCache_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037314">
        <property type="entry name" value="STHK_MctS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01049">
        <property type="entry name" value="Cache_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0418">Kinase</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="217"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="7">
        <location>
            <begin position="266"/>
            <end position="463"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG77674.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="475" mass="52851" checksum="A9DC5A4A2BEC0A3D" modified="2017-03-15" version="1">MVQLFARIRNWFDFSYGQKVFLLATVPLVLAVTLISLVVTSQSRQLAEREIAVLESQLIQAKQDELKNYLSIARTAVVNTYGRAAPDDEEAKLAVSRELAAMLYGQDGYFFVFDYDGMNLVAPRQTDLINKNWSGLEDGNGIPITDELIRIARTGGGYHSFEWPKPSTGELGQMVVYVNGLQDWRWVVGTGIFIDDVVESVAAARADVEDRINRTSFYILIIASIAVLGVFLSGLVLNIRERRLADVKLKALTQRIIDTQEEERSRVARELHDGISQMLVGVRYALELTRRRIGLGDERSGESLEKGIDGLGEAIQEVRRISRDLRPGVLDDLGLGPALQALTDDFSTRTSIDVEFETVVFRNRLDQEARIALYRIAQEALTNIERHAQASHVSVSLKGNRRGALLRISDDGTGMVWPAAARGRVSGLGLRNMQERIEQIGGSLRVMSSEDGTTIDAQVPLTHMLRPQDPQKESA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MQL1</accession>
    <name>A0A1M5MQL1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="10">ATP-binding cassette, subfamily B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_0959</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79526.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899706.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0959"/>
    <dbReference type="EnsemblBacteria" id="SHG79526">
        <property type="protein sequence ID" value="SHG79526"/>
        <property type="gene ID" value="SAMN05444003_0959"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221">
        <property type="entry name" value="PTHR24221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="41"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="76"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="157"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="186"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="267"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="305"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="42"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="365"/>
            <end position="599"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="398"/>
            <end position="405"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG79526.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="607" mass="67075" checksum="E78CEC423A6485E1" modified="2017-03-15" version="1">MRKLTKTDANLNNERIQGWNVIKRVVPYLWPEGETGVKVRVVAAMAALLLSQVIAVLTPQFFAQAVDVMTPETADIGTYLGLGAVGLTVAYGFARLMTVGFQQLRDVIFTPVGQRALRKLALETFTHIHRLSMRYHITRKTGGLSRIIERGVKGVEFLLRFLLFSVGPLVLQLLMIAGVLFFTFDVWYLVVVAVTIVLYVWFTFAVTEWRVKIRKVMNDQDTDANQKAIDSLLNFETVKYFGAERWEAERYDGAMKKYAQAAIKTNYTLAFLNFGQSLIITAGLVAVMVMAALGVNDGTLTVGDFVLVNAYMIQITMPLNFLGTVYREIRQALIDMGDMFDLLEQPAEVQDKPDAKDLEIKGGAISLSGVAFGYDEERPILKGIDLDVPAGQTVAIVGSSGSGKSTIGRLLFRFYDVNGGALAIDGQDVRDVTQESLHAQIGVVPQDTVLFNDTVYYNIAYGRPDATRDEVIAAAKAAKIHDFIESLPDGYETTVGERGLKLSGGEKQRVGIARTLLKDPPILLLDEATSALDTETELEIQAELEHMGHGRTVITIAHRLSTIANADKIVVLEDGHVVEQGTHDELLSLDGRYAHLWNRQLDEEEIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MVS6</accession>
    <name>A0A1M5MVS6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1053</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81430.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899790.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1053"/>
    <dbReference type="EnsemblBacteria" id="SHG81430">
        <property type="protein sequence ID" value="SHG81430"/>
        <property type="gene ID" value="SAMN05444003_1053"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017039">
        <property type="entry name" value="Virul_fac_BrkB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30213">
        <property type="entry name" value="PTHR30213"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03631">
        <property type="entry name" value="Virul_fac_BrkB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF035875">
        <property type="entry name" value="RNase_BN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00765">
        <property type="entry name" value="yihY_not_rbn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="24"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="93"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="132"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="177"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="209"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="244"/>
            <end position="269"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG81430.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="281" mass="30435" checksum="83F2FBA375791D09" modified="2017-03-15" version="1">MRNFFVKGYDLAWAVLQTAGDRQLAFIAAGVSFFGVFSIFPGIAAVIAIFGLVADPTVVADQFQYFEELIPEPIYNMIWDQISRLLGASSETLGWATFVSTTLAIWSARAGVSGLVRGLNAIADEPPRNGVFQAVFALGLTVILMAMALVAIGLFVFAPIILTFFPWTGDGALRLEIMRWVIGLSVLFAALSLLYRFGPNQKDARIRWVTAGAGFVIVMFVAASSGLTYYLANFGRYNEIYGSIGAVIALLLWVYMASFLILLGAALNVHVYGGLTGRSVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N1D9</accession>
    <name>A0A1M5N1D9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Ferredoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_1114</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 7">
            <name>[3Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:21137"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 7">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82803.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899840.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1114"/>
    <dbReference type="EnsemblBacteria" id="SHG82803">
        <property type="protein sequence ID" value="SHG82803"/>
        <property type="gene ID" value="SAMN05444003_1114"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051538">
        <property type="term" value="F:3 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000813">
        <property type="entry name" value="7Fe_ferredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022569">
        <property type="entry name" value="Fd_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11953">
        <property type="entry name" value="DUF3470"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00037">
        <property type="entry name" value="Fer4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00354">
        <property type="entry name" value="7FE8SFRDOXIN"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6 7" id="KW-0003">3Fe-4S</keyword>
    <keyword evidence="7" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="7" id="KW-0249">Electron transport</keyword>
    <keyword evidence="4 7" id="KW-0408">Iron</keyword>
    <keyword evidence="5 7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0677">Repeat</keyword>
    <keyword evidence="7" id="KW-0813">Transport</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="9">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="9">
        <location>
            <begin position="31"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="87"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="8">
        <location>
            <begin position="87"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU364098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG82803.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="111" mass="12522" checksum="83B48414DD143ED3" modified="2017-03-15" version="1">MTYIVNDNCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTEPDMEKWVEFNRKYSELWPVIITKKDPMPNADEMDGKEGKMELFSKAAGEGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N534</accession>
    <name>A0A1M5N534_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Isopenicillin N synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1188</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the iron/ascorbate-dependent oxidoreductase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84557.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899906.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG84557">
        <property type="protein sequence ID" value="SHG84557"/>
        <property type="gene ID" value="SAMN05444003_1188"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026992">
        <property type="entry name" value="DIOX_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044861">
        <property type="entry name" value="IPNS-like_FE2OG_OXY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027443">
        <property type="entry name" value="IPNS-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005123">
        <property type="entry name" value="Oxoglu/Fe-dep_dioxygenase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03171">
        <property type="entry name" value="2OG-FeII_Oxy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14226">
        <property type="entry name" value="DIOX_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51471">
        <property type="entry name" value="FE2OG_OXY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0408">Iron</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fe2OG dioxygenase" evidence="3">
        <location>
            <begin position="176"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="87"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU003682"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG84557.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="313" mass="33777" checksum="EDEA77F79247B85B" modified="2017-03-15" version="1">MDFATFNLAEFEASDSEARAALAARLDQVCQEIGFLVLTGHGVPTDVIEGVWSKTGAFFDQSFDAKARVKAPEPGYPYGYLGPNSEALARSKGEDTPPDLKESFNGGPQSVPEGVTDPEALSFCYVPTIWPEVDGFKVAWTAYYAAMEDLAARVMVAFAAALNLPEDFFAGFIDHPISALRALNYPATGAVALENQQRAGAHTDYGSLTILLPQPGSQGLQVRSPQGEWVDVPAPEGAFVINIGDLMARWTADRWVSTLHRVAVRPHQPARKSLAFFHQPNWDAEIVPLDGSAACEPVRSGPYLMGKFKSSGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NBR1</accession>
    <name>A0A1M5NBR1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Cytochrome-c oxidase</fullName>
            <ecNumber evidence="3">7.1.1.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Cytochrome aa3 subunit 3</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Cytochrome c oxidase polypeptide III</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">SAMN05444003_1306</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell membrane</location>
            <topology evidence="9">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the cytochrome c oxidase subunit 3 family.</text>
    </comment>
    <dbReference type="EC" id="7.1.1.9" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86915.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900008.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1306"/>
    <dbReference type="EnsemblBacteria" id="SHG86915">
        <property type="protein sequence ID" value="SHG86915"/>
        <property type="gene ID" value="SAMN05444003_1306"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004129">
        <property type="term" value="F:cytochrome-c oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019646">
        <property type="term" value="P:aerobic electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01665">
        <property type="entry name" value="Cyt_c_Oxidase_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024791">
        <property type="entry name" value="Cyt_c/ubiquinol_Oxase_su3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033945">
        <property type="entry name" value="Cyt_c_oxase_su3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000298">
        <property type="entry name" value="Cyt_c_oxidase-like_su3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035973">
        <property type="entry name" value="Cyt_c_oxidase_su3-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013833">
        <property type="entry name" value="Cyt_c_oxidase_su3_a-hlx"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11403">
        <property type="entry name" value="PTHR11403"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00510">
        <property type="entry name" value="COX3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81452">
        <property type="entry name" value="SSF81452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50253">
        <property type="entry name" value="COX3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="16"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="43"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="80"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="167"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="205"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="246"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="domain" description="COX3" evidence="11">
        <location>
            <begin position="5"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010581"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00031400"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00031625"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003376"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50253"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG86915.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="267" mass="30353" checksum="98C6BA14F5567422" modified="2017-03-15" version="1">MAHEKNHDYHILNPSIWPLAGGVGAFVMLFGAVLWMKDSSQPYMFLIGLALTLYVMYAWWAEVVTEGNTGDHTPVVRIGLRYGVIMFIMSEVMFFAAWFWSFFKHALYPMGPESPAVDGVWPPVGIETFDPWHLPLINTLILLCSGAAATWAHHALVHENNRQDMKWGLILAVALGVLFTFFQAYEYGHAAFSFSGNIYGANFFMATGFHGFHVVIGTIFLLVCLLRLQRGHFTQEQHVGFEAAAWYWHFVDVVWLFLFFAVYIWGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NBS5</accession>
    <name>A0A1M5NBS5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">SURF1-like protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1305</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the SURF1 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1305"/>
    <dbReference type="EnsemblBacteria" id="SHG86902">
        <property type="protein sequence ID" value="SHG86902"/>
        <property type="gene ID" value="SAMN05444003_1305"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="CDD" id="cd06662">
        <property type="entry name" value="SURF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002994">
        <property type="entry name" value="Surf1/Shy1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045214">
        <property type="entry name" value="Surf1/Surf4"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23427">
        <property type="entry name" value="PTHR23427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02104">
        <property type="entry name" value="SURF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50895">
        <property type="entry name" value="SURF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="6"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="198"/>
            <end position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG86902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="225" mass="25008" checksum="1DA997B70ED23DC1" modified="2017-03-15" version="1">MRKLFFPIFLGVSGVAVLLYLGFWQMQRLAWKEGILADIDARMTGAPIALPQDPTETEDEYIAIELSGLIGNEELHVLTSGTAAGTGYQVITALETSDGRRVLLDLGLLPLEAKDLPSQNAQAEIVGNLIWPDDVNDSTPNPDLEKNIWFGRDVDAMSDALGTEPLMVVAREMSPPDPRLTPLPVDTSTIKNDHWEYAVTWFLLAIVWAIMSIYWIIRTTRQKDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NC94</accession>
    <name>A0A1M5NC94_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pilus assembly protein CpaE</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1325</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87194.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900021.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1325"/>
    <dbReference type="EnsemblBacteria" id="SHG87194">
        <property type="protein sequence ID" value="SHG87194"/>
        <property type="gene ID" value="SAMN05444003_1325"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025669">
        <property type="entry name" value="AAA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13614">
        <property type="entry name" value="AAA_31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_31" evidence="1">
        <location>
            <begin position="160"/>
            <end position="317"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG87194.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="414" mass="45432" checksum="05D9DA1A37173C48" modified="2017-03-15" version="1">MSSSAVLKTESQPLVACTISRDVQIFDLLIEDMEAALGETWGDLGFDDAEAFLQQSEADDLQFVAVAMDQDDEQNIEQIGRIIGMAKSKSIKVILITEDVSPASLHQLLRQGGDEFVPYPLPENELANAIERVLAPEPEVQLIAEQETKLKATGDKEGVLIAVHGMAGGTGATTLAVNLAWELANVDKDNAPRVCLLDFDFQFGSAATFLDLARRETVLELLTDTEAMDSESFMQALMTYEEKLQVLTSPMDMIPLDLITPTDIERIIEVARTNFDYVIIDMPSTMVEWSQTVLETAHVYFATLELDMRSAQNTLRLKRALQSEDLPFDKLRFVLNKAPGFTDLNGKSRVKRLAESLGISIEVQLPDGGKPVAQNADHGVPLATGVPKNATRKEIMKLAQSVHAVNADEAEARG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NCE1</accession>
    <name>A0A1M5NCE1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1321</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87132.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1321"/>
    <dbReference type="EnsemblBacteria" id="SHG87132">
        <property type="protein sequence ID" value="SHG87132"/>
        <property type="gene ID" value="SAMN05444003_1321"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG87132.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="58" mass="5921" checksum="488E55797547CD2C" modified="2017-03-15" version="1">MFHLLKSFLSSDEGAVTVDWVVLTAAVVLMGVGVGALVLGAVEDGSEQISDDVVANTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NCM7</accession>
    <name>A0A1M5NCM7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">3-hydroxyisobutyrate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1333</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87324.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1333"/>
    <dbReference type="EnsemblBacteria" id="SHG87324">
        <property type="protein sequence ID" value="SHG87324"/>
        <property type="gene ID" value="SAMN05444003_1333"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016054">
        <property type="term" value="P:organic acid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006115">
        <property type="entry name" value="6PGDH_NADP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015815">
        <property type="entry name" value="HIBADH-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029154">
        <property type="entry name" value="NADP-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14833">
        <property type="entry name" value="NAD_binding_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03446">
        <property type="entry name" value="NAD_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000103">
        <property type="entry name" value="HIBADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD_binding_2" evidence="2">
        <location>
            <begin position="2"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="domain" description="NAD_binding_11" evidence="3">
        <location>
            <begin position="154"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR000103-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF14833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG87324.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="259" mass="27912" checksum="4926D406275BBE4A" modified="2017-03-15" version="1">MGVAGCGRMGKPMLAALRSAGFDAHGFDVRNIEGVETKADAFAQNLAILVTVVRDELETDQVLFTDQNFTAQATDLETIIISSTLSPTYVKSLRDRVPTHIAMIDAPMSGAQIRAENATLSFMLGGDVNTLDRLQPLFNAMGRDFHRMGDYSSAMTAKVLNNLLAASSTAMTRLVLDWADANDVDEAKLLDLIHTSSGQNWLASGFNEIEFARDGYEPDNTIGILVKDIAAALDIAPEGASTALPELIQLTIRGLNPRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5ND09</accession>
    <name>A0A1M5ND09_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ribosomal-protein-alanine N-acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1302</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86863.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900005.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1302"/>
    <dbReference type="EnsemblBacteria" id="SHG86863">
        <property type="protein sequence ID" value="SHG86863"/>
        <property type="gene ID" value="SAMN05444003_1302"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13302">
        <property type="entry name" value="Acetyltransf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="15"/>
            <end position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG86863.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="194" mass="22284" checksum="0A6742F1939B393C" modified="2017-03-15" version="1">MLGVRKKVKLETERMTLRPPQHSDFRAWAAIRKESKAFLEPWEPTWAADHLSRKGFTNRVYWAQRAIANGTAVPLFLIRRDDDALLGAITLDNIRRGPAQAGTTGYWVGHPYARSGYMQEALEAVVHYAFTTLDLSRIESGCLPENTPSRRLLEKCGYKYEGVAQSYLQINGRWRNHVLYANLRHDRRGRTDVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NDK4</accession>
    <name>A0A1M5NDK4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Tol-Pal system protein TolQ</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">tolQ</name>
        <name evidence="10" type="ORF">SAMN05444003_1346</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">The Tol-Pal system is composed of five core proteins: the inner membrane proteins TolA, TolQ and TolR, the periplasmic protein TolB and the outer membrane protein Pal. They form a network linking the inner and outer membranes and the peptidoglycan layer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell inner membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the ExbB/TolQ family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87552.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900039.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1346"/>
    <dbReference type="EnsemblBacteria" id="SHG87552">
        <property type="protein sequence ID" value="SHG87552"/>
        <property type="gene ID" value="SAMN05444003_1346"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043213">
        <property type="term" value="P:bacteriocin transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02202">
        <property type="entry name" value="TolQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002898">
        <property type="entry name" value="MotA_ExbB_proton_chnl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014163">
        <property type="entry name" value="Tol-Pal_TolQ"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01618">
        <property type="entry name" value="MotA_ExbB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02796">
        <property type="entry name" value="tolQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="8 10" id="KW-0132">Cell division</keyword>
    <keyword evidence="4 8" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="3 8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="12"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="127"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="170"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="domain" description="MotA_ExbB" evidence="9">
        <location>
            <begin position="82"/>
            <end position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010442"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG87552.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="223" mass="24173" checksum="6815B3D84E2B1785" modified="2017-03-15" version="1">MEAATDFTLWALFARATITVKIVMIMLIFASFWCWAVIIDKARQYRKARREAAVFDMAFWSGEPLDDLYRQIGSTPRGASETIFAAGMSEWDRSYGESGLIAGAHSRIDRSMDVAIAKEAGLLQKGLPVLATVGSTAPFVGLFGTVWGIMNAFIEIAEQQNTNLAVVAPGIAEALLATGLGLLAAIPAVVFYNKLSADSDRIIAGYEAFADEFSTILSRQMDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NGD6</accession>
    <name>A0A1M5NGD6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transporter family-2 protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1387</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88289.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900078.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1387"/>
    <dbReference type="EnsemblBacteria" id="SHG88289">
        <property type="protein sequence ID" value="SHG88289"/>
        <property type="gene ID" value="SAMN05444003_1387"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006750">
        <property type="entry name" value="YdcZ"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34821">
        <property type="entry name" value="PTHR34821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04657">
        <property type="entry name" value="DMT_YdcZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="39"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="68"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="92"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="130"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG88289.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="150" mass="15441" checksum="DD705A072CCB4C2F" modified="2017-03-15" version="1">MTTAPLYSLIAFLTGGLLTLMVLTNGTLAVYGTLLFSSWVPHVTGTVAALAILAVLKPKRAKPLRPPLWAYLAGVGGAFTVMLTSATVNTSLALSGTIALGLAGQVVFSLFADIRGLFGLPKKRPSARDLTALGMILSGALLLVLMGGSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NGQ1</accession>
    <name>A0A1M5NGQ1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Response regulator receiver protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1393</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88399.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900083.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1393"/>
    <dbReference type="EnsemblBacteria" id="SHG88399">
        <property type="protein sequence ID" value="SHG88399"/>
        <property type="gene ID" value="SAMN05444003_1393"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="23"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG88399.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="238" mass="25704" checksum="736A296E566D082D" modified="2017-03-15" version="1">MDKLDDLLAAQQPTARRPLLGVTILVVEDSRFACEAFRLMATKSGARIRRADSITNARRHLAIYRPSVVIVDVGLPDGSGLDLIQNLSLGSPKLDVILGISGDPDQEDALLKAGADHFLAKPIANLAEFQSAILDHLPRDRQPPAPRAVSEEMVDPDRIAFHDDLNHAAQVLGNSRSTETLDYITQFLTGVAASVEDTELQRVVSQLKHLRNQGAPTDIGIAKLTALVQSRLAAAAPM</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NIR1</accession>
    <name>A0A1M5NIR1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Nucleoside ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1445</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900129.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1445"/>
    <dbReference type="EnsemblBacteria" id="SHG89474">
        <property type="protein sequence ID" value="SHG89474"/>
        <property type="gene ID" value="SAMN05444003_1445"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="8"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="260"/>
            <end position="507"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="40"/>
            <end position="47"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG89474.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="511" mass="55926" checksum="9DB8220C665592B1" modified="2017-03-15" version="1">MSETAPAIELKGISKAFGPVQANKDISIRVMPGTIHGIIGENGAGKSTLMSILYGFYKADAGEIWISGQKTTIPDSQAAIAAGIGMVFQHFKLVENFTVLENVVLGAEDGALLRPSLAKARRELKALAEEYELNVDPDALIEDIGVGMQQRVEILKALYRQADILILDEPTGVLTPAEADQLFRILERLKEEGKTIILITHKLREIMDTTDTVSVMRRGEMTATVKTSETSPPELAELMVGRKVLLRVEKKPAEVGDKILEVQNLNVTDEKGVHRVKDVSFDVKAGEILGIAGVAGNGQSELLEVLGGYEKATGSIKVNGQEIDLTGAKSDGRSRRERGISHVPEDRQSEGLIMDYMAWENVAFGYHHDDRYNKGIRMDNAAIRADTEAKMERFDVRPPNPKLAAKSFSGGNQQKIVLAREIERNPDLLLIGQPTRGVDIGAIEFIHQQIVALRDQGKAILLVSVELEEILSLSDRIAVMFDGRIMGERMPDQTDEKELGLLMAGMTKGAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NJZ3</accession>
    <name>A0A1M5NJZ3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 10">Succinate dehydrogenase iron-sulfur subunit</fullName>
            <ecNumber evidence="10">1.3.5.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">SAMN05444003_1462</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>a quinone + succinate = a quinol + fumarate</text>
            <dbReference type="Rhea" id="RHEA:40523"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:29806"/>
            <dbReference type="ChEBI" id="CHEBI:30031"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
            <dbReference type="EC" id="1.3.5.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>2Fe-2S cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49601"/>
        </cofactor>
        <text evidence="10">Binds 1 [2Fe-2S] cluster.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>[3Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:21137"/>
        </cofactor>
        <text evidence="10">Binds 1 [3Fe-4S] cluster.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="10">Binds 1 [4Fe-4S] cluster.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Carbohydrate metabolism; tricarboxylic acid cycle; fumarate from succinate (bacterial route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Part of an enzyme complex containing four subunits: a flavoprotein, an iron-sulfur, cytochrome b-556, and a hydrophobic anchor protein.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 10">Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.</text>
    </comment>
    <dbReference type="EC" id="1.3.5.1" evidence="10"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89841.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900144.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1462"/>
    <dbReference type="EnsemblBacteria" id="SHG89841">
        <property type="protein sequence ID" value="SHG89841"/>
        <property type="gene ID" value="SAMN05444003_1462"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00223">
        <property type="reaction ID" value="UER01005"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051538">
        <property type="term" value="F:3 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008177">
        <property type="term" value="F:succinate dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1060.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006058">
        <property type="entry name" value="2Fe2S_fd_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009051">
        <property type="entry name" value="Helical_ferredxn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004489">
        <property type="entry name" value="Succ_DH/fum_Rdtase_Fe-S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025192">
        <property type="entry name" value="Succ_DH/fum_Rdtase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13085">
        <property type="entry name" value="Fer2_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00384">
        <property type="entry name" value="dhsB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00197">
        <property type="entry name" value="2FE2S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="9 10" id="KW-0003">3Fe-4S</keyword>
    <keyword evidence="10" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="7 10" id="KW-0408">Iron</keyword>
    <keyword evidence="8 10" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="6 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="11">
        <location>
            <begin position="28"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="12">
        <location>
            <begin position="160"/>
            <end position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022131"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU361237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHG89841.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="259" mass="29316" checksum="A92F75831AFFF181" modified="2017-03-15" version="1">MVQLTLPKNSRMVTGKTWPKPEGATNLRTVKIYRWNPDDGKNPSVDTYFVDMDTCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGINTLACIYGMDEVKGDIKIYPLPHMPVIKDLIPDLTHFYAQHASIMPWLETKTNTPAKEWKQSIEDREKLDGGYECVMCACCSTSCPSYWWNGDRYLGPAALLAAHRWLVDSRDEATGERLDNLEDPFKLYRCHTIMNCAKTCPKGLNPAKAISEIKQMMVERVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NKF8</accession>
    <name>A0A1M5NKF8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Crotonyl-CoA carboxylase/reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1455</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89679.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1455"/>
    <dbReference type="EnsemblBacteria" id="SHG89679">
        <property type="protein sequence ID" value="SHG89679"/>
        <property type="gene ID" value="SAMN05444003_1455"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043880">
        <property type="term" value="F:crotonyl-CoA reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd08246">
        <property type="entry name" value="crotonyl_coA_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010085">
        <property type="entry name" value="Crot_CoA_red"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01751">
        <property type="entry name" value="crot-CoA-red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PKS_ER" evidence="1">
        <location>
            <begin position="50"/>
            <end position="405"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG89679.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="433" mass="48291" checksum="D3C521D937BB4DB6" modified="2017-03-15" version="1">MVTPMALDQNADIHVYDAPQKDLYEVGEMPPMGHVPEQMYAWTIRRERHGEPDKAFQIEVVDVPKPDSNEVLVLVMAAGVNYNGVWAGLGIPISPFDVHKADFHIAGSDASGIVWAVGDKVKRWKVGDEVVIHCNQDDGDDEHCNGGDPMMSPTQRIWGYETPDGSFAQFTCVQSQQLMHRPKHLTWEEAACYTLTLATAYRMLFGHHPHELKPGQNVLVWGASGGLGSYAIQLINTAGANAIGVISDEDKRDFVMSLGAKGVLNRKDFDCWGQLPEVNTEEYNKWFSEVRKFGKAIWEITGKGNNVDMVFEHPGEATFPVSSFVVKRGGMVVICAGTSGYNLTVDARYMWMHQKRLQGSHFATLQQASAANQLMLEQRLDPCMSECFKWDEIPDAHIKMRKNEHKPGNMSVLVQATQTGLRTLEDTIAVSKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NLR9</accession>
    <name>A0A1M5NLR9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1490</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90506.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1490"/>
    <dbReference type="EnsemblBacteria" id="SHG90506">
        <property type="protein sequence ID" value="SHG90506"/>
        <property type="gene ID" value="SAMN05444003_1490"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG90506.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="34" mass="3787" checksum="1F3EE9E7DEC90B32" modified="2017-03-15" version="1">MTTSTPIRVEIVSDVVCPWCVIGYFQLAKASRDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NQD8</accession>
    <name>A0A1M5NQD8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1545</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900214.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG91771">
        <property type="protein sequence ID" value="SHG91771"/>
        <property type="gene ID" value="SAMN05444003_1545"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012928891" evidence="1">
        <location>
            <begin position="28"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG91771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="153" mass="16602" checksum="A0874807E99CF612" modified="2017-03-15" version="1">MTLNRRVVLTSLAAIPVAGFTAYCVQAQTTPPVYTEGGIAIDGTDPVGYFKEGKPVAGDASITHDWNGATWRFSSVENRDAFASDPETYAPQYGGYCAYAVSEGYTASTVPEAWKIVDGKLYLNFSRGIQNRWERDIPGRIAAGNANWPSVLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PJZ9</accession>
    <name>A0A1M5PJZ9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">UPF0145 protein SAMN05444003_1658</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1658</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the UPF0145 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH01533.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900482.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH01533">
        <property type="protein sequence ID" value="SHH01533"/>
        <property type="gene ID" value="SAMN05444003_1658"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00338">
        <property type="entry name" value="UPF0145"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002765">
        <property type="entry name" value="UPF0145"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035439">
        <property type="entry name" value="UPF0145_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34068">
        <property type="entry name" value="PTHR34068"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01906">
        <property type="entry name" value="YbjQ_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117782">
        <property type="entry name" value="SSF117782"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010751"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00338"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH01533.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="161" mass="17162" checksum="923B96FB7AFDC269" modified="2017-03-15" version="1">MAKCAGCGKKIGFLEAGSNGFCSTCAYLESLEPEVVEQINLKAEIEADVDAILLTTETVPNLNITKRIEIVSAECAFGMNVFKDLFAGVRDIVGGRSEAVQKTMRDSRKAALYELKREAYEVGANAVVGVDLDYVELSSAGSMVMLVASGTAVVIEVQANE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PLW0</accession>
    <name>A0A1M5PLW0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">L-alanine-DL-glutamate epimerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1722</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02784.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900535.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1722"/>
    <dbReference type="EnsemblBacteria" id="SHH02784">
        <property type="protein sequence ID" value="SHH02784"/>
        <property type="gene ID" value="SAMN05444003_1722"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036849">
        <property type="entry name" value="Enolase-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029017">
        <property type="entry name" value="Enolase-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029065">
        <property type="entry name" value="Enolase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013342">
        <property type="entry name" value="Mandelate_racemase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034593">
        <property type="entry name" value="Mandelate_racemase_DgoD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013341">
        <property type="entry name" value="Mandelate_racemase_N_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48080">
        <property type="entry name" value="PTHR48080"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13378">
        <property type="entry name" value="MR_MLE_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02746">
        <property type="entry name" value="MR_MLE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00922">
        <property type="entry name" value="MR_MLE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51604">
        <property type="entry name" value="SSF51604"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54826">
        <property type="entry name" value="SSF54826"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MR_MLE" evidence="1">
        <location>
            <begin position="146"/>
            <end position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH02784.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="408" mass="44029" checksum="53A9079FC14B6E8E" modified="2017-03-15" version="1">MKLADLEIIVTAPPALGWGGRYWIIPKLTTTDGIVGYGECYASSVGPDAMQGVIRDVFERHMEGENPENIELMFRRVYSSGFTQRPDLTVIGAWSGLEIACWDIIGKARGRPVHALLGGQMNDRVRAYTYLYPEPHHPMPEFWANPDMAAEAALARVADGYTAVKFDPAGPYTMRGGHMPSMHDISLSAAFCKSIREAVGDRADLLFGTHGQFSTGGAIRLGEAIAPYSPLWFEEPIPPDNPAEMAKVVAAVPIPVATGERLLTKTEFADALRAGVSILQPALGRAGGIWECKKIAALAEVYNAQMAPHLYAGPVEWAANVHLAASIPNILMAETIETPFHDALIGGTIKVEAGYIEPPTEPGLGINFDETLAKANPFEGDGLHLQMQEDPISYHGLNIFEGGAPAKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PQI6</accession>
    <name>A0A1M5PQI6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Protein-tyrosine-phosphatase</fullName>
            <ecNumber evidence="2">3.1.3.48</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1783</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the protein-tyrosine phosphatase family.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.48" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03982.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900583.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1783"/>
    <dbReference type="EnsemblBacteria" id="SHH03982">
        <property type="protein sequence ID" value="SHH03982"/>
        <property type="gene ID" value="SAMN05444003_1783"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004725">
        <property type="term" value="F:protein tyrosine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016311">
        <property type="term" value="P:dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022778">
        <property type="entry name" value="CDKN3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029021">
        <property type="entry name" value="Prot-tyrosine_phosphatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000387">
        <property type="entry name" value="Tyr_Pase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05706">
        <property type="entry name" value="CDKN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52799">
        <property type="entry name" value="SSF52799"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50056">
        <property type="entry name" value="TYR_PHOSPHATASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TYR_PHOSPHATASE_2" evidence="3">
        <location>
            <begin position="102"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009580"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013064"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH03982.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="162" mass="17365" checksum="51338AD72DC705E5" modified="2017-03-15" version="1">MSDYSIFEVPIGQGVGAIAPIPGRSGAYERDVSVLLRWAPDLVISMTGLPEMERVGADALEKDLQAADVAWRHVPITDFGTPTANTMLIWPEVEAQALDVLDDGGRVLAHCYGGCGRSGMAILRMMVALGEEPSQALARLRKARSCAVETDAQFAWASECST</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PU49</accession>
    <name>A0A1M5PU49_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Beta-methylmalyl-CoA/L-malyl-CoA lyase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1845</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the HpcH/HpaI aldolase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05232.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900639.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1845"/>
    <dbReference type="EnsemblBacteria" id="SHH05232">
        <property type="protein sequence ID" value="SHH05232"/>
        <property type="gene ID" value="SAMN05444003_1845"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005000">
        <property type="entry name" value="Aldolase/citrate-lyase_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011206">
        <property type="entry name" value="Citrate_lyase_beta/mcl1/mcl2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_Kinase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040442">
        <property type="entry name" value="Pyrv_Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03328">
        <property type="entry name" value="HpcH_HpaI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015582">
        <property type="entry name" value="Cit_lyase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="SSF51621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0456">Lyase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HpcH_HpaI" evidence="6">
        <location>
            <begin position="15"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="76"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 5">
        <location>
            <position position="141"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="168"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005568"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR015582-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR015582-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF03328"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH05232.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="318" mass="34265" checksum="F62796D0173F6748" modified="2017-03-15" version="1">MSFRLQPTPPARPNRCQLFGPGSNVKLFEKMAASAADVINLDLEDSVAPTDKDAARANVIKATHEVDWNTKHLSVRINGLDTPYWYKDVVDLMEQASDRLDQIMIPKVGCAADIYAVDALVTAIEAAKGRTKPITFEVIIESAAGIAHVEEIAASSPRLAAMSLGAADFAASMGMQTTGIGGTQENYYMLHGDTRHYSDPWHWAQAAIVAACRTHGVLPVDGPFGDFSDDDGYRAQARRSATLGMVGKWAIHPKQIALANEVFTPSDEAVAEAREILQAMEDAKARGEGATVYKGRLVDIASIKQAEVIVAQSELING</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q1X9</accession>
    <name>A0A1M5Q1X9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncaracterized surface protein containing fasciclin (FAS1) repeats</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1995</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08064.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900757.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1995"/>
    <dbReference type="EnsemblBacteria" id="SHH08064">
        <property type="protein sequence ID" value="SHH08064"/>
        <property type="gene ID" value="SAMN05444003_1995"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036378">
        <property type="entry name" value="FAS1_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000782">
        <property type="entry name" value="FAS1_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02469">
        <property type="entry name" value="Fasciclin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00554">
        <property type="entry name" value="FAS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82153">
        <property type="entry name" value="SSF82153"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50213">
        <property type="entry name" value="FAS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013336592" evidence="1">
        <location>
            <begin position="22"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="domain" description="FAS1" evidence="2">
        <location>
            <begin position="25"/>
            <end position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH08064.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="158" mass="16124" checksum="C5AA5D9762B18A85" modified="2017-03-15" version="1">MLRRTVLALTASSAFAFQAFAMGNDKDIVDTAVEAGSFTTLVAAVQAAGLVDTLKGDGPFTVFAPTDEAFAALPEGTVEGLLADPEALAAILTYHVVPGKVMSGDLTNNMMAPTANGQDVTIMTEGGVMVNDANVVAADVEASNGVIHVIDKVILPSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q2K7</accession>
    <name>A0A1M5Q2K7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">DNA polymerase IV</fullName>
            <shortName evidence="5">Pol IV</shortName>
            <ecNumber evidence="5">2.7.7.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">dinB</name>
        <name evidence="7" type="ORF">SAMN05444003_2002</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 5">Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 5">
            <text>a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)</text>
            <dbReference type="Rhea" id="RHEA:22508"/>
            <dbReference type="Rhea" id="RHEA-COMP:17339"/>
            <dbReference type="Rhea" id="RHEA-COMP:17340"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:173112"/>
            <dbReference type="EC" id="2.7.7.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="5">Binds 2 magnesium ions per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2 5">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the DNA polymerase type-Y family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.7" evidence="5"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08212.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900764.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2002"/>
    <dbReference type="EnsemblBacteria" id="SHH08212">
        <property type="protein sequence ID" value="SHH08212"/>
        <property type="gene ID" value="SAMN05444003_2002"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003684">
        <property type="term" value="F:damaged DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006261">
        <property type="term" value="P:DNA-templated DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009432">
        <property type="term" value="P:SOS response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd03586">
        <property type="entry name" value="PolY_Pol_IV_kappa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01113">
        <property type="entry name" value="DNApol_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036775">
        <property type="entry name" value="DNA_pol_Y-fam_lit_finger_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017961">
        <property type="entry name" value="DNA_pol_Y-fam_little_finger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022880">
        <property type="entry name" value="DNApol_IV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001126">
        <property type="entry name" value="UmuC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00817">
        <property type="entry name" value="IMS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11799">
        <property type="entry name" value="IMS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100879">
        <property type="entry name" value="SSF100879"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="SSF56672"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50173">
        <property type="entry name" value="UMUC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-0227">DNA damage</keyword>
    <keyword evidence="5" id="KW-0234">DNA repair</keyword>
    <keyword evidence="5" id="KW-0235">DNA replication</keyword>
    <keyword evidence="5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0515">Mutator protein</keyword>
    <keyword evidence="5" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="UmuC" evidence="6">
        <location>
            <begin position="37"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="active site" evidence="5">
        <location>
            <position position="135"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="41"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="134"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="site" description="Substrate discrimination" evidence="5">
        <location>
            <position position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010945"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00024632"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00025589"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH08212.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="417" mass="46183" checksum="B99C1A8EA05059D5" modified="2017-03-15" version="1">MQALCRDCLTTFDTEGRCPACRSPRVTRHPELFDLSIAHMDCDAFYASVEKRDNPELADKTVIIGGGRRGVVSTACYVARIKGVKSAMPMFQALKLCPEAVVVKPRFEAYTEASKAIRSMMDELTPVVEPLSLDEAFMDLTGTARLHGAPPAVMLARLVKRMKDELGLTGSIGLSHNKFLAKVASDLDKPRGFSIIGKAETTEFLRPKSVRLIWGIGPMAQESLAKAGIRTFDDLLRWDRRDLHDRFGGMGERLYSLARGEDGRRISPHTPVKGLSNETTFHEDTNDVDILDGHIWRMSEKVSARAKAKDMAGRVVTLKLKKSDHKLVTKRQSLYHPTQLTDVIYRTARGLFDQVGDKGPYRLLGVGISQLASAADADREGDLLDPGANRRAQAEHAADEIREKFGKDAIIKGRALR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q3Q1</accession>
    <name>A0A1M5Q3Q1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Threonine/homoserine/homoserine lactone efflux protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2037</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08877.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900795.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2037"/>
    <dbReference type="EnsemblBacteria" id="SHH08877">
        <property type="protein sequence ID" value="SHH08877"/>
        <property type="gene ID" value="SAMN05444003_2037"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001123">
        <property type="entry name" value="LeuE-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30086">
        <property type="entry name" value="PTHR30086"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01810">
        <property type="entry name" value="LysE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="43"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="73"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="114"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="150"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="184"/>
            <end position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH08877.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="206" mass="21989" checksum="A8C41EB26E4458D5" modified="2017-03-15" version="1">MTITPSDMLLYAGALLVLFLTPGPVWVALIARGLSGGFHGAWPLALGVVVGDVLWPFLAIIGVSWVVSVYADFMTVLKWVAAVIFLVMGYMVIKNADKTIASDSRLTRPGAWAGFLAGLAVILGNPKAILFYMGVLPGFFDLRALTGWDIAVICFLSFIIPLIGNLCLAIFIDKARSILKSPTALRRTNITSGVLLIGVGLVIPLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QNG3</accession>
    <name>A0A1M5QNG3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Transcription termination factor Rho</fullName>
            <ecNumber evidence="8">3.6.4.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">ATP-dependent helicase Rho</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">rho</name>
        <name evidence="11" type="ORF">SAMN05444003_2225</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homohexamer. The homohexamer assembles into an open ring structure.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8 9">Belongs to the Rho family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.-" evidence="8"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15622.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901082.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2225"/>
    <dbReference type="EnsemblBacteria" id="SHH15622">
        <property type="protein sequence ID" value="SHH15622"/>
        <property type="gene ID" value="SAMN05444003_2225"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008186">
        <property type="term" value="F:ATP-dependent activity, acting on RNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006353">
        <property type="term" value="P:DNA-templated transcription, termination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04459">
        <property type="entry name" value="Rho_CSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01128">
        <property type="entry name" value="rho_factor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01884">
        <property type="entry name" value="Rho"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000194">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_nucl-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011129">
        <property type="entry name" value="CSD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041703">
        <property type="entry name" value="Rho_factor_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011112">
        <property type="entry name" value="Rho_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036269">
        <property type="entry name" value="Rho_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011113">
        <property type="entry name" value="Rho_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004665">
        <property type="entry name" value="Term_rho"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46425">
        <property type="entry name" value="PTHR46425"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00006">
        <property type="entry name" value="ATP-synt_ab"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07498">
        <property type="entry name" value="Rho_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07497">
        <property type="entry name" value="Rho_RNA_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00357">
        <property type="entry name" value="CSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00959">
        <property type="entry name" value="Rho_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF68912">
        <property type="entry name" value="SSF68912"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00767">
        <property type="entry name" value="rho"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51856">
        <property type="entry name" value="RHO_RNA_BD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 8" id="KW-0347">Helicase</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8 9" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="7 8" id="KW-0804">Transcription</keyword>
    <keyword evidence="6 8" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="1 8" id="KW-0806">Transcription termination</keyword>
    <feature type="domain" description="Rho RNA-BD" evidence="10">
        <location>
            <begin position="53"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="175"/>
            <end position="180"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="187"/>
            <end position="192"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="218"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51856"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH15622.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="424" mass="47285" checksum="2F202C8C012F7F7D" modified="2017-03-15" version="1">MSQDRLNLSDLKAQSPKDLLSLAEELEIENASTMRKGDMMFAILKERADDEWIIGGDGVLEVVQDGFGFLRSPEANYLPGPDDIYVSPDMIRKFSLRTGDSVSGVIKEPQDNERYFALVNVEQINFEDPEKAKHKVAFDNLTPLYPDERLQMEIETDAATKDRSARIIDLVAPIGKGQRSLIVAPPRTGKTVLLQNIANSIEKNHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPASRHVAVSEMVIEKAKRLVEHKRDVVILLDSITRLGRAFNTTVPSSGKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRVFPAMDILKSGTRKEELLVDKVDLQKTYVLRRILNPMGTTDAIEFLIGKLKQTKTNSDFFDSMNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QPV0</accession>
    <name>A0A1M5QPV0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">tRNA modification GTPase MnmE</fullName>
            <ecNumber evidence="6">3.6.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">mnmE</name>
        <name evidence="6" type="synonym">trmE</name>
        <name evidence="8" type="ORF">SAMN05444003_2224</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </cofactor>
        <text evidence="6">Binds 1 potassium ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homodimer. Heterotetramer of two MnmE and two MnmG subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="3.6.-.-" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15603.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901081.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2224"/>
    <dbReference type="EnsemblBacteria" id="SHH15603">
        <property type="protein sequence ID" value="SHH15603"/>
        <property type="gene ID" value="SAMN05444003_2224"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006400">
        <property type="term" value="P:tRNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04164">
        <property type="entry name" value="trmE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.430">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00379">
        <property type="entry name" value="GTPase_MnmE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031168">
        <property type="entry name" value="G_TrmE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018948">
        <property type="entry name" value="GTP-bd_TrmE_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004520">
        <property type="entry name" value="GTPase_MnmE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027368">
        <property type="entry name" value="MnmE_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025867">
        <property type="entry name" value="MnmE_helical"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027266">
        <property type="entry name" value="TrmE/GcvT_dom1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12631">
        <property type="entry name" value="MnmE_helical"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10396">
        <property type="entry name" value="TrmE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51709">
        <property type="entry name" value="G_TRME"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 6" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 6" id="KW-0630">Potassium</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="TrmE-type G" evidence="7">
        <location>
            <begin position="211"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="20"/>
        </location>
        <ligand>
            <name>(6S)-5-formyl-5,6,7,8-tetrahydrofolate</name>
            <dbReference type="ChEBI" id="CHEBI:57457"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="75"/>
        </location>
        <ligand>
            <name>(6S)-5-formyl-5,6,7,8-tetrahydrofolate</name>
            <dbReference type="ChEBI" id="CHEBI:57457"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="115"/>
        </location>
        <ligand>
            <name>(6S)-5-formyl-5,6,7,8-tetrahydrofolate</name>
            <dbReference type="ChEBI" id="CHEBI:57457"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="221"/>
            <end position="226"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="221"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="225"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="240"/>
            <end position="246"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="240"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="242"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
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        <location>
            <position position="245"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
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        <location>
            <position position="246"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
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        </ligand>
    </feature>
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        <location>
            <begin position="265"/>
            <end position="268"/>
        </location>
        <ligand>
            <name>GTP</name>
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        </ligand>
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        <location>
            <position position="425"/>
        </location>
        <ligand>
            <name>(6S)-5-formyl-5,6,7,8-tetrahydrofolate</name>
            <dbReference type="ChEBI" id="CHEBI:57457"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51709"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH15603.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="425" mass="45544" checksum="BD233BFF555D28C7" modified="2017-03-15" version="1">MDTIYAAATPPGRSGVAVVRISGPKAKAAAKALCGNVPTSRGVRKLRDESGGVLDEALVLNFEGAASFTGEPVVELQLHGSPAILKSVLAELSKLPDLRSAEAGEFTRRALDNGKLDLAQVEGLADLIDAETEAQRLQALRVFEGGLSAKAEAWRADLIRAIALLEATIDFADEEVPTDVFPEVNDLINRTREDIAREVEGSFVAERVKEGFEVAIVGRPNVGKSTLLNRLAGRDAAITSEIAGTTRDVIEVQMDLKGIPVTFIDTAGVRDTDDQIEKLGVERAVSRAKHADLRVFLKENKDLLEIQVQADDIIRRPKADLSPGDGLGVSGQTGEGLDELVDEIVAVFEARVSSVGVAIKERHRVALLSCDSQLSDVISKIALDEPVDLICEELRAAVRSVDMIVGHVDVEDLLGEIFSSFCIGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QSW5</accession>
    <name>A0A1M5QSW5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycosyl transferase family 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2295</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16991.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH16991">
        <property type="protein sequence ID" value="SHH16991"/>
        <property type="gene ID" value="SAMN05444003_2295"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="2">
        <location>
            <begin position="5"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="383"/>
            <end position="413"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH16991.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="414" mass="47306" checksum="C095D9F28A33C3ED" modified="2017-03-15" version="1">MPALSIIVTSYNIENYIAQCLDSVVNQTLRDLEVIVVDDGSTDGTPDIIRAYADRDPRIKPILMTENSIGGVATPANLGLDAATAPYIGFADGDDYCELDMFEKLLNAAEAGDHDLAMCKYKLLDESTGELADPAEVNRWNDLDERSYELDVEAKRDFLRFIAVPWRKIYKRSMIEREKIRFPIGDYFYEDNPFHWFSIISAESIAVVPEVLCFHRVTRAGQTMSTADERLFKIFLHHNTIRDWLTEREIEEVYRANLFAWVMSQMEWISERTPKELRETLFDCLRDIYSQYDAADIEAALVAGKKGLRAKKLSDSLAKNNLAKFNQFLDGRTRSNNPFMDGLYHLRYSGVRHTAGLASQYVGRRVSGMGNLTGRRNASEFKLDDVMFSLAVLQAQIKQIEEKLDTLVEKQEKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QY83</accession>
    <name>A0A1M5QY83_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein</fullName>
            <shortName evidence="11">DPOR subunit L</shortName>
            <shortName evidence="11">LI-POR subunit L</shortName>
            <ecNumber evidence="11">1.3.7.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">bchL</name>
        <name evidence="13" type="ORF">SAMN05444003_2397</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The L component serves as a unique electron donor to the NB-component of the complex, and binds Mg-ATP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>2 ADP + chlorophyllide a + oxidized 2[4Fe-4S]-[ferredoxin] + 2 phosphate = 2 ATP + 2 H2O + protochlorophyllide a + reduced 2[4Fe-4S]-[ferredoxin]</text>
            <dbReference type="Rhea" id="RHEA:28202"/>
            <dbReference type="Rhea" id="RHEA-COMP:10002"/>
            <dbReference type="Rhea" id="RHEA-COMP:10004"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33722"/>
            <dbReference type="ChEBI" id="CHEBI:33723"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:83348"/>
            <dbReference type="ChEBI" id="CHEBI:83350"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="1.3.7.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="11">Binds 1 [4Fe-4S] cluster per dimer.</text>
    </comment>
    <comment type="pathway">
        <text evidence="11">Porphyrin-containing compound metabolism; bacteriochlorophyll biosynthesis (light-independent).</text>
    </comment>
    <comment type="subunit">
        <text evidence="11">Homodimer. Protochlorophyllide reductase is composed of three subunits; BchL, BchN and BchB.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 11 12">Belongs to the NifH/BchL/ChlL family.</text>
    </comment>
    <dbReference type="EC" id="1.3.7.7" evidence="11"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19104.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901353.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2397"/>
    <dbReference type="EnsemblBacteria" id="SHH19104">
        <property type="protein sequence ID" value="SHH19104"/>
        <property type="gene ID" value="SAMN05444003_2397"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00671"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016730">
        <property type="term" value="F:oxidoreductase activity, acting on iron-sulfur proteins as donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016636">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036070">
        <property type="term" value="P:light-independent bacteriochlorophyll biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019685">
        <property type="term" value="P:photosynthesis, dark reaction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00355">
        <property type="entry name" value="ChlL_BchL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030655">
        <property type="entry name" value="NifH/chlL_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000392">
        <property type="entry name" value="NifH/frxC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005971">
        <property type="entry name" value="Protochlorophyllide_ATP-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42864">
        <property type="entry name" value="PTHR42864"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00142">
        <property type="entry name" value="Fer4_NifH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000363">
        <property type="entry name" value="Nitrogenase_iron"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01281">
        <property type="entry name" value="DPOR_bchL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00746">
        <property type="entry name" value="NIFH_FRXC_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00692">
        <property type="entry name" value="NIFH_FRXC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51026">
        <property type="entry name" value="NIFH_FRXC_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11 12" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5 11 12" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10 11" id="KW-0077">Bacteriochlorophyll biosynthesis</keyword>
    <keyword evidence="9 11" id="KW-0149">Chlorophyll biosynthesis</keyword>
    <keyword evidence="7 11 12" id="KW-0408">Iron</keyword>
    <keyword evidence="8 11 12" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="11" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 11 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 11 12" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 11 12" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2 11" id="KW-0602">Photosynthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="42"/>
            <end position="47"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="46"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="71"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="127"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="161"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="212"/>
            <end position="213"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="236"/>
            <end position="238"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005504"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00355"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU003688"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHH19104.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="298" mass="32592" checksum="42717E6D1FF087D7" modified="2017-03-15" version="1">MSPKDNVPVLKGQDGEGSVQVHQDASMKIEGAKVFSVYGKGGIGKSTTSSNLSAAFSKLGKRVLQIGCDPKHDSTFTLTGSLVPTVIDILKEVDFHAEELRPEDFVFEGFNGVKCVEAGGPPAGTGCGGYVVGQTVKLLKQHHMLEDTDVVIFDVLGDVVCGGFAAPLQHADRALIVTANDFDSIYAMNRIIAAVQAKSNNYKVRLAGCVANRSRETDEVDRYCKTVGFNRIAHMPDLDAIRRSRLKKKTLFEMPDDEEIVQVRKEYIRLAETLWNGTEPLAPAPMEDRDIFELLGFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QYL5</accession>
    <name>A0A1M5QYL5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Aerobic magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase</fullName>
            <shortName evidence="7">Aerobic Mg-protoporphyrin IX monomethyl ester oxidative cyclase</shortName>
            <ecNumber evidence="7">1.14.13.81</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">acsF</name>
        <name evidence="9" type="ORF">SAMN05444003_2404</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>2 H(+) + Mg-protoporphyrin IX 13-monomethyl ester + 3 NADPH + 3 O2 = 3,8-divinyl protochlorophyllide a + 5 H2O + 3 NADP(+)</text>
            <dbReference type="Rhea" id="RHEA:33235"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:58632"/>
            <dbReference type="ChEBI" id="CHEBI:60491"/>
            <dbReference type="EC" id="1.14.13.81"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="7">Porphyrin-containing compound metabolism; bacteriochlorophyll biosynthesis (light-independent).</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Porphyrin-containing compound metabolism; chlorophyll biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the AcsF family.</text>
    </comment>
    <dbReference type="EC" id="1.14.13.81" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901364.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2404"/>
    <dbReference type="EnsemblBacteria" id="SHH19245">
        <property type="protein sequence ID" value="SHH19245"/>
        <property type="gene ID" value="SAMN05444003_2404"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00668"/>
    <dbReference type="UniPathway" id="UPA00671"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048529">
        <property type="term" value="F:magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036070">
        <property type="term" value="P:light-independent bacteriochlorophyll biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015979">
        <property type="term" value="P:photosynthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01047">
        <property type="entry name" value="ACSF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01840">
        <property type="entry name" value="AcsF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008434">
        <property type="entry name" value="AcsF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003251">
        <property type="entry name" value="Rubrerythrin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31053">
        <property type="entry name" value="PTHR31053"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02915">
        <property type="entry name" value="Rubrerythrin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="SSF47240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02029">
        <property type="entry name" value="AcsF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0077">Bacteriochlorophyll biosynthesis</keyword>
    <keyword evidence="6 7" id="KW-0149">Chlorophyll biosynthesis</keyword>
    <keyword evidence="7" id="KW-0408">Iron</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 7" id="KW-0521">NADP</keyword>
    <keyword evidence="7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4 7" id="KW-0602">Photosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rubrerythrin" evidence="8">
        <location>
            <begin position="106"/>
            <end position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000655"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006550"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH19245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="375" mass="42908" checksum="BAED1DE338AEE53D" modified="2017-03-15" version="1">MNVHNTHSADASTVEEALAAGNYDPVVDSKTATDVAMQNTLLTPRFYTTDFDEMDAIDVSPVRAEWDQLIGQMKADPNKGHFKKNEDWDNIDWDGMDPQLKAEFIDFLISSCTAEFSGCVLYKEMKRRGSNDDITTLFQLMARDEARHAGFINDALREAGIAVNLGFLTQSKKYTYFRPKFIYYATYLSEKIGYARYITIYRHLEAHPDKRFHPIFKWFKEWCNDEFSHGEAFALLMKTDPKLTESFANKLWIKFFLTAVYSTMWVRDHQRPAFHEALGVDPAWYGQEVFRKTSEISKQVFPMTLDIDHPRWIPALDRMQDANIQIAAGKKQGGVGGWFKRMGGSAKAGFAFLSLMTIPAHSNAVPTNPRLEPAY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QZR0</accession>
    <name>A0A1M5QZR0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized conserved protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2425</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the Gfa family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19667.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2425"/>
    <dbReference type="EnsemblBacteria" id="SHH19667">
        <property type="protein sequence ID" value="SHH19667"/>
        <property type="gene ID" value="SAMN05444003_2425"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016846">
        <property type="term" value="F:carbon-sulfur lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006913">
        <property type="entry name" value="CENP-V/GFA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011057">
        <property type="entry name" value="Mss4-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51316">
        <property type="entry name" value="SSF51316"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51891">
        <property type="entry name" value="CENP_V_GFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CENP-V/GFA" evidence="3">
        <location>
            <begin position="6"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005495"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51891"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH19667.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="123" mass="13781" checksum="A3AD54F9E6C5ED85" modified="2017-03-15" version="1">MGDRSIQGKCHCGAVSFEYFGQTDRLVSCNCSICRRLRALWAHDSPSKVEMKVKEGALLQYSWGDEELAFNTCRICGCTVSWTPLAPDSIDRMAVNMAMAQPQDIADIPVRHFDGADSWEFLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QZZ4</accession>
    <name>A0A1M5QZZ4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">TspO and MBR related proteins</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2414</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the TspO/BZRP family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19436.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901376.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2414"/>
    <dbReference type="EnsemblBacteria" id="SHH19436">
        <property type="protein sequence ID" value="SHH19436"/>
        <property type="gene ID" value="SAMN05444003_2414"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd15904">
        <property type="entry name" value="TSPO_MBR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038330">
        <property type="entry name" value="TspO/MBR-related_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004307">
        <property type="entry name" value="TspO_MBR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10057">
        <property type="entry name" value="PTHR10057"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03073">
        <property type="entry name" value="TspO_MBR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005859">
        <property type="entry name" value="PBR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="42"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="67"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="97"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="121"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007524"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH19436.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="159" mass="17876" checksum="D9000DC48628DB0A" modified="2017-03-15" version="1">MDIWLFFIFLLATFGAGATGAMFPTGEWYKALNKPSWVPPNWVFPVVWTTIYFLIAFAAARVATMEGSAYAMAFWALQIAFNTLWTPVFFGARDLRGSLPIMAMLWLSVLGCLVTHWQVDLYAGLAFVPYLTWVTVAAALNLSMVRLNPDQPKLELDKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R0F7</accession>
    <name>A0A1M5R0F7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">Adenine deaminase</fullName>
            <shortName evidence="5">Adenase</shortName>
            <shortName evidence="5">Adenine aminase</shortName>
            <ecNumber evidence="3 5">3.5.4.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">ade</name>
        <name evidence="8" type="ORF">SAMN05444003_2415</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>adenine + H(+) + H2O = hypoxanthine + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:23688"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16708"/>
            <dbReference type="ChEBI" id="CHEBI:17368"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="EC" id="3.5.4.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family.</text>
    </comment>
    <dbReference type="EC" id="3.5.4.2" evidence="3 5"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19459.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2415"/>
    <dbReference type="EnsemblBacteria" id="SHH19459">
        <property type="protein sequence ID" value="SHH19459"/>
        <property type="gene ID" value="SAMN05444003_2415"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000034">
        <property type="term" value="F:adenine deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006146">
        <property type="term" value="P:adenine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01295">
        <property type="entry name" value="AdeC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01518">
        <property type="entry name" value="Adenine_deamin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006679">
        <property type="entry name" value="Adenine_deam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026912">
        <property type="entry name" value="Adenine_deam_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011059">
        <property type="entry name" value="Metal-dep_hydrolase_composite"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11113:SF2">
        <property type="entry name" value="PTHR11113:SF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13382">
        <property type="entry name" value="Adenine_deam_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01979">
        <property type="entry name" value="Amidohydro_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51338">
        <property type="entry name" value="SSF51338"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01178">
        <property type="entry name" value="ade"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0464">Manganese</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidohydro-rel" evidence="6">
        <location>
            <begin position="84"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="domain" description="Adenine_deam_C" evidence="7">
        <location>
            <begin position="430"/>
            <end position="595"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006773"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01518"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF13382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH19459.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="604" mass="63691" checksum="9B59EA674A881C93" modified="2017-03-15" version="1">MSVLGMEQHFKTWAECAPRLVAVAAGHEPADLVISGGKLVSVQTREVLDGWQVAVSDGRFAYVGPDASHCIGPQTEVIDACGRYLVPGLCDGHMHIESGMLTPAEFAAAVIPHGTTTMFTDPHEIANVLGLAGVRMMHDEALMQPINIYTQMPSCAPSAPGLETTGFEISAEDVAEAMAWPGIIGLGEMMNFPGVINGDPQMLAEMAATMNAGKTVGGHYASPDKGVAFSAYVAGGAADDHEGTAEADALARVRNGMRSMMRLGSAWYDVESQITAVTEKGLDPRNFILCTDDCMAGTLVNDGHMNRVVRHAIDCGCAPLVALQMATINTATHFGLERELGSIAPGRRADVILTSDLTTLPIEQVIARGQTVAKDGVLTVDCPHYTWPENSRGSIHLGKKLSGVDFEIQAPAGANSAKVKVIGVVENQAPTKALTADLPVTDGVIEGQEGVCQIALVERHRATGDVVNGFVSGFGYEGRMAMASTVAHDSHHMIVVGTDRETMATAANRLGEVGGGVTVWKDGEELALIELPIAGLMSDQPAAEVAAKADQMVSAMEACGCTLNNAYMQHSLLALVVIPELRISDLGLVDVTKFELTDLIETPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RBU3</accession>
    <name>A0A1M5RBU3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Pyridoxal phosphate homeostasis protein</fullName>
            <shortName evidence="1">PLP homeostasis protein</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2496</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23731.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901579.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2496"/>
    <dbReference type="EnsemblBacteria" id="SHH23731">
        <property type="protein sequence ID" value="SHH23731"/>
        <property type="gene ID" value="SAMN05444003_2496"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02087">
        <property type="entry name" value="PLP_homeostasis"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001608">
        <property type="entry name" value="Ala_racemase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029066">
        <property type="entry name" value="PLP-binding_barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011078">
        <property type="entry name" value="PyrdxlP_homeostasis"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10146">
        <property type="entry name" value="PTHR10146"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01168">
        <property type="entry name" value="Ala_racemase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004848">
        <property type="entry name" value="YBL036c_PLPDEIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51419">
        <property type="entry name" value="SSF51419"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00044">
        <property type="entry name" value="TIGR00044"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ala_racemase_N" evidence="4">
        <location>
            <begin position="5"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="1 2">
        <location>
            <position position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02087"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR004848-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU004514"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01168"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH23731.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="217" mass="23929" checksum="0E492FF62DFBBBF1" modified="2017-03-15" version="1">MPLKDIQERMKVAAQSAGRKVDDIRLIAVSKVQPNERVESVLEEGHRVFGENRVQEAASKWPDFCERYDNIDLHLIGPLQSNKVRQAMELANAIHTLDRPKLAKTIVRIAQETGNCPELFIQVNTGEEPQKAGIAPKETDQFVAECRGLNLPIVGLMCIPPIDEEPSLHFALLAKIAERNGLTGLSMGMSSDFERAIALGATHIRVGSAIFGERVPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RCX0</accession>
    <name>A0A1M5RCX0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Isopenicillin N synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2504</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the iron/ascorbate-dependent oxidoreductase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23886.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901592.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH23886">
        <property type="protein sequence ID" value="SHH23886"/>
        <property type="gene ID" value="SAMN05444003_2504"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026992">
        <property type="entry name" value="DIOX_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044861">
        <property type="entry name" value="IPNS-like_FE2OG_OXY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027443">
        <property type="entry name" value="IPNS-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005123">
        <property type="entry name" value="Oxoglu/Fe-dep_dioxygenase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03171">
        <property type="entry name" value="2OG-FeII_Oxy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14226">
        <property type="entry name" value="DIOX_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51471">
        <property type="entry name" value="FE2OG_OXY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0408">Iron</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fe2OG dioxygenase" evidence="2">
        <location>
            <begin position="172"/>
            <end position="274"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU003682"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH23886.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="318" mass="35004" checksum="D3081A0E638A10FB" modified="2017-03-15" version="1">MTEFTEIAVLDLAPLIAGDDTTKLARAFAKAYGETGFGYIINHGVDPALRTAVFDASKRFHALPADEKNTLALDAAHRGYIAINTSTDVTTDLAEVTKPNQSASFMIMREDAKSDPNVYLSGPNQWPQMDEFREVCEAYVSAMTRLGQQLMNLALEAIGVEDRSILQAFDTPTTWLRLLHYPQMPPQSPEDLYGSAPHKDFGCLTLLAQDNVGGLQVQTPDGEWVDAPPMEDAFIVNVGDMLHRMSNGKLLSTPHRVINTSGRERYSVPFFFDPHVLTQVEPLPGTGVPAFEPLNFGAFLRSELEASYDAHQGEGEQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5REQ0</accession>
    <name>A0A1M5REQ0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2533</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24489.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901639.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2533"/>
    <dbReference type="EnsemblBacteria" id="SHH24489">
        <property type="protein sequence ID" value="SHH24489"/>
        <property type="gene ID" value="SAMN05444003_2533"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006439">
        <property type="entry name" value="HAD-SF_hydro_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041492">
        <property type="entry name" value="HAD_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023198">
        <property type="entry name" value="PGP-like_dom2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13419">
        <property type="entry name" value="HAD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01509">
        <property type="entry name" value="HAD-SF-IA-v3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH24489.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="219" mass="24021" checksum="C916B34B21E18144" modified="2017-03-15" version="1">MYAAALFDMDGLLLDTERVYLRTFLQAAEDLRFPFPDELDPIFRRMVGLRAKDSAQIMDERLGVHIDVAAFNEAWSHHTVKALEKEMPLQATVRETLQRVAEAKVPCAVATSTRTFFAIDHLERAGIAEFFDVVIGGEQVSKGKPAPEIYLRAAEALGVDITKCAAFEDSNTGIRAAVASGARAVQIPDMVEPTEEVRALGHSIAQDLMGAARHIGLIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5REW0</accession>
    <name>A0A1M5REW0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Phosphoserine transaminase</fullName>
            <ecNumber evidence="6">2.6.1.52</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_2553</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>2-oxoglutarate + 4-(phosphooxy)-L-threonine = (R)-3-hydroxy-2-oxo-4-phosphooxybutanoate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:16573"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58452"/>
            <dbReference type="ChEBI" id="CHEBI:58538"/>
            <dbReference type="EC" id="2.6.1.52"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>2-oxoglutarate + O-phospho-L-serine = 3-phosphooxypyruvate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:14329"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:18110"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:57524"/>
            <dbReference type="EC" id="2.6.1.52"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="4">Amino-acid biosynthesis; L-serine biosynthesis; L-serine from 3-phospho-D-glycerate: step 2/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.52" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901666.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2553"/>
    <dbReference type="EnsemblBacteria" id="SHH24902">
        <property type="protein sequence ID" value="SHH24902"/>
        <property type="gene ID" value="SAMN05444003_2553"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00135">
        <property type="reaction ID" value="UER00197"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004648">
        <property type="term" value="F:O-phospho-L-serine:2-oxoglutarate aminotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006564">
        <property type="term" value="P:L-serine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022278">
        <property type="entry name" value="Pser_aminoTfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006271">
        <property type="entry name" value="Pser_aminoTfrase_methanosarc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000525">
        <property type="entry name" value="SerC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01365">
        <property type="entry name" value="serC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0718">Serine biosynthesis</keyword>
    <keyword evidence="9" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001607"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001871"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005099"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00006904"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00013030"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023299"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH24902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="380" mass="41380" checksum="9E9B9CF2EA7BF833" modified="2017-03-15" version="1">MVMTKPATRPANPRFSSGPCAKPPTWKLDDLSDASLGRSHRAAVGKSKLKEAIELTREVLRVPHDHKIGIVPASDTGAFEMAMWSMLGERPVQMVAWESFGAGWVTDVVKQLKIEATTHTAEYGEIVDMAALDYDQDVCFTWNGTTSGVRVASGDVIPADREGLTLCDATSAAFAQDLPWDKLDVTTFSWQKVMGGEAAHGMLILSPRAVERLESYTPAWPLPKIFRLTKGGKLIDGIFEGATINTPSMLAVEDYLVALKWAKSIGGLDALMHRANANAQAIWNFTASRDWIANLASDRSIRSNTSVCLKFTDDRITDGAAFAKAVAKRLEAEGVALDVGAYRDAPAGLRIWCGATVETSDIEAMLPWLEWAFETEIAAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RIK4</accession>
    <name>A0A1M5RIK4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2589</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25643.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901905.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2589"/>
    <dbReference type="EnsemblBacteria" id="SHH25643">
        <property type="protein sequence ID" value="SHH25643"/>
        <property type="gene ID" value="SAMN05444003_2589"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1300.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000120">
        <property type="entry name" value="Amidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020556">
        <property type="entry name" value="Amidase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023631">
        <property type="entry name" value="Amidase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036928">
        <property type="entry name" value="AS_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11895">
        <property type="entry name" value="PTHR11895"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01425">
        <property type="entry name" value="Amidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75304">
        <property type="entry name" value="SSF75304"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00571">
        <property type="entry name" value="AMIDASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Amidase" evidence="1">
        <location>
            <begin position="26"/>
            <end position="431"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH25643.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="442" mass="46767" checksum="7B318640932D21D7" modified="2017-03-15" version="1">MEDWRWMTAADLGRGIGAGDIDPVALTETYLAAIDAHPHRDRIYARVTHDRARAEAKAASERAANGMRRGPLDGVPISWKDLFDTAGTATEAGTALLEGRVPDTDAEVLQNATAAGLVCLGKTHLSEIAFSGLGLNPMTATPPCVNDEDAVPGGSSSGAAASVAFGLAAAGIGSDTGGSVRIPSAWNDLTGLKTTHGRVSVNGVLPLCLTFDTVGPLCRSVEDNALILAALEGQKPADLTAPTLDGARFAILDTIAMDDLEDAPRAAFQSAVERLQAAGAQVEHIQFDALNEAFAMTGPLYTADAWAWWKHRILADPAKMFSQIYDRVRVGADVAASDYIAHWTRLREIRGEFASATAHFDAILMPSSPILPPNVQRLLEDEDYYVTKNLLALRNTRVGNLTDTCSISLPTGVPSCGIMLNGRNGGEEKLLRIAAAAEKALS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RJT1</accession>
    <name>A0A1M5RJT1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5 6">50S ribosomal protein L20</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rplT</name>
        <name evidence="7" type="ORF">SAMN05444003_2628</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 6">Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the bacterial ribosomal protein bL20 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26494.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901780.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2628"/>
    <dbReference type="EnsemblBacteria" id="SHH26494">
        <property type="protein sequence ID" value="SHH26494"/>
        <property type="gene ID" value="SAMN05444003_2628"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000027">
        <property type="term" value="P:ribosomal large subunit assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07026">
        <property type="entry name" value="Ribosomal_L20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1900.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00382">
        <property type="entry name" value="Ribosomal_L20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005813">
        <property type="entry name" value="Ribosomal_L20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035566">
        <property type="entry name" value="Ribosomal_protein_L20_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10986">
        <property type="entry name" value="PTHR10986"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00453">
        <property type="entry name" value="Ribosomal_L20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00062">
        <property type="entry name" value="RIBOSOMALL20"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74731">
        <property type="entry name" value="SSF74731"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01032">
        <property type="entry name" value="rplT_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00937">
        <property type="entry name" value="RIBOSOMAL_L20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5 6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5 6" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007698"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH26494.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="119" mass="13369" checksum="0C117C8781592310" modified="2017-03-15" version="1">MRVKGGTVTHRRHKKVLDAAKGYYDRRSKTFKVAKQAVDKANQYATRDRHNRKRNFRSLWIQRINAGVRAVDADLNYSKFINGLTLAGIEVDRKVLADLAVNEPEAFAAIVGKAKAAMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RJZ2</accession>
    <name>A0A1M5RJZ2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">50S ribosomal protein L35</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rpmI</name>
        <name evidence="6" type="ORF">SAMN05444003_2627</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4 5">Belongs to the bacterial ribosomal protein bL35 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26466.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901778.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2627"/>
    <dbReference type="EnsemblBacteria" id="SHH26466">
        <property type="protein sequence ID" value="SHH26466"/>
        <property type="gene ID" value="SAMN05444003_2627"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.410.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00514">
        <property type="entry name" value="Ribosomal_L35"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021137">
        <property type="entry name" value="Ribosomal_L35"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001706">
        <property type="entry name" value="Ribosomal_L35_non-mt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037229">
        <property type="entry name" value="Ribosomal_L35_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01632">
        <property type="entry name" value="Ribosomal_L35p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00064">
        <property type="entry name" value="RIBOSOMALL35"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143034">
        <property type="entry name" value="SSF143034"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00001">
        <property type="entry name" value="rpmI_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 5" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00514"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000568"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH26466.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="66" mass="7425" checksum="4275FB0A57635CE2" modified="2017-03-15" version="1">MPKMKTKSSCKKRFKVTAKGRVVAAQAGKRHGMIKRTNKFLRNARGTTTLCKADEGIIKPMMPYAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RU52</accession>
    <name>A0A1M5RU52_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2698</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH29837.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH29837">
        <property type="protein sequence ID" value="SHH29837"/>
        <property type="gene ID" value="SAMN05444003_2698"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH29837.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="36" mass="4122" checksum="C8E27305B1733B33" modified="2017-03-15" version="1">MGKPALLGFPLFFVRIVKHGPISHYSIERPDFEGKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RUY5</accession>
    <name>A0A1M5RUY5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Monosaccharide ABC transporter membrane protein, CUT2 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2712</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30142.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902222.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2712"/>
    <dbReference type="EnsemblBacteria" id="SHH30142">
        <property type="protein sequence ID" value="SHH30142"/>
        <property type="gene ID" value="SAMN05444003_2712"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="24"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="67"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="97"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="136"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="167"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="197"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="253"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="284"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="307"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="333"/>
            <end position="351"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH30142.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="357" mass="38241" checksum="8BD8AAC22FEDB3BB" modified="2017-03-15" version="1">MADTSQGVGGLTFDKSKRSWPNELNILLALVIIIVVFEAIGQFAPYMNGQSFLFDTKDRFDSIFNEARLQIIILQVAIIGIIALGVTQVIITGGIDLSSGPLVAATAMIAMSFAQVAEVNGFPNPKALFGPWAMDLPVIVPVVIGLAFGACIGIINGTFIAYFRIPPFIATLGMFLFCRGIALWWSGGNPVSFPTDAYAWIGSGMMPVVWFVLLAIIFQLIMSYTVYGKHTYAIGSNEEAARMSGINVKRHKVMVYMIASMLAAFAGIVLSSKAVTAQAGMGEFYELFAIAMAVIGGISLQGGRGSIIGTVLGAMVLGVIRSGFTYIKLDGSYQLMAMGAIIVAAVILDQYRQRNRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RVU6</accession>
    <name>A0A1M5RVU6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="14">Phenylalanine--tRNA ligase beta subunit</fullName>
            <ecNumber evidence="14">6.1.1.20</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="14">Phenylalanyl-tRNA synthetase beta subunit</fullName>
            <shortName evidence="14">PheRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="primary">pheT</name>
        <name evidence="19" type="ORF">SAMN05444003_2725</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="19 20" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="19 20">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 14">
            <text>ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + H(+) + L-phenylalanyl-tRNA(Phe)</text>
            <dbReference type="Rhea" id="RHEA:19413"/>
            <dbReference type="Rhea" id="RHEA-COMP:9668"/>
            <dbReference type="Rhea" id="RHEA-COMP:9699"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58095"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78531"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.20"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="14">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="14">Binds 2 magnesium ions per tetramer.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4 14">Tetramer of two alpha and two beta subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 14">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 14">Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.20" evidence="14"/>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30425.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901980.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2725"/>
    <dbReference type="EnsemblBacteria" id="SHH30425">
        <property type="protein sequence ID" value="SHH30425"/>
        <property type="gene ID" value="SAMN05444003_2725"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004826">
        <property type="term" value="F:phenylalanine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006432">
        <property type="term" value="P:phenylalanyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00769">
        <property type="entry name" value="PheRS_beta_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd02796">
        <property type="entry name" value="tRNA_bind_bactPheRS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.380">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00283">
        <property type="entry name" value="Phe_tRNA_synth_beta1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005146">
        <property type="entry name" value="B3/B4_tRNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005121">
        <property type="entry name" value="Fdx_antiC-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036690">
        <property type="entry name" value="Fdx_antiC-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045060">
        <property type="entry name" value="Phe-tRNA-ligase_IIc_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004532">
        <property type="entry name" value="Phe-tRNA-ligase_IIc_bsu_bact"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020825">
        <property type="entry name" value="Phe-tRNA_synthase-like_B3/B4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041616">
        <property type="entry name" value="PheRS_beta_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002547">
        <property type="entry name" value="tRNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033714">
        <property type="entry name" value="tRNA_bind_bactPheRS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005147">
        <property type="entry name" value="tRNA_synthase_B5-dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10947">
        <property type="entry name" value="PTHR10947"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03483">
        <property type="entry name" value="B3_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03484">
        <property type="entry name" value="B5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03147">
        <property type="entry name" value="FDX-ACB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01588">
        <property type="entry name" value="tRNA_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17759">
        <property type="entry name" value="tRNA_synthFbeta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00873">
        <property type="entry name" value="B3_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00874">
        <property type="entry name" value="B5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00896">
        <property type="entry name" value="FDX-ACB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54991">
        <property type="entry name" value="SSF54991"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00472">
        <property type="entry name" value="pheT_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51483">
        <property type="entry name" value="B5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51447">
        <property type="entry name" value="FDX_ACB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50886">
        <property type="entry name" value="TRBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13 14 19" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="9 14" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="14" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 14" id="KW-0436">Ligase</keyword>
    <keyword evidence="10 14" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7 14" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8 14" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12 14" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11 15" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5 15" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="TRNA-binding" evidence="16">
        <location>
            <begin position="39"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="domain" description="B5" evidence="18">
        <location>
            <begin position="404"/>
            <end position="475"/>
        </location>
    </feature>
    <feature type="domain" description="FDX-ACB" evidence="17">
        <location>
            <begin position="704"/>
            <end position="797"/>
        </location>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="453"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="459"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="462"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="463"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000395"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008653"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00283"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS50886"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="PROSITE" id="PS51447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS51483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="SHH30425.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="798" mass="85672" checksum="C1413DA0238FB8A3" modified="2017-03-15" version="1">MKFTLSWLKSHLETEASVDYILYALTDLGLEVEGVENPAEKLRDFTIGYVKSAEKHPDADKLKVCQVETKDGPTQIICGAPNAREGITVVIASPGTYVPGIDTTIGVGKIRGVESFGMMCSEREMELSDEHDGIIELPSGEVGESFTDWLAANDPSKVDPVIEIAITPNRPDALGVRGVARDLAARGLGVMKDRSVDPVPAAFKSAISVAIDEDTLDGCPVFCGRVIRGVKNGPSPQWLQDLLKAIGLRPISFLVDVTNYFTYDLNRPLHVFDMAKVSGNLRIHRAKGGETLVALDDKEYTLQKGQMVISDDNGPESIAGVMGGLETGCTEDTVDVFVESAYWDPIQIAYTGRALKINSDARYRFERGVDPAFTPEGLEHAVRMIVDHAGGEASEVIQAGEVPDTSRAYKLDTDRVVSLVGMEIPADEQRATLTALGFELDGDMASVPSWRPDVMGEADLVEEVARVASLTKLEGKPLSRVNVGVPKPILTVGQRRASIARRTAAALGYNECVTYSFIDNDAATLFGGGDDATMLENPISSEMSHMRPALLAGLLQAAARNQARGFADMALFEVGDAFHGGEPGEQQTLVTGLLIGRTGPKDVHGESRAVDVYDAKADAEAVLSAIGAPSKVQIMRGVDDWWHPGRSGKICLGPKKVLGVFGEIHPKILREMDVKGPAVGFTLYPAEIPQPKNRTTNKGALHATDLQAVERDFAFVVDADMEAATLVNAAAGADKALIENVRVFDEFIGGSLGEGKKSLAITVRLQPTEKTLKDEDIAAVAEKIVEKVRKATGGELRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RWQ3</accession>
    <name>A0A1M5RWQ3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NADPH2:quinone reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2735</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30665.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901996.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2735"/>
    <dbReference type="EnsemblBacteria" id="SHH30665">
        <property type="protein sequence ID" value="SHH30665"/>
        <property type="gene ID" value="SAMN05444003_2735"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05276">
        <property type="entry name" value="p53_inducible_oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014189">
        <property type="entry name" value="Quinone_OxRdtase_PIG3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02824">
        <property type="entry name" value="quinone_pig3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PKS_ER" evidence="1">
        <location>
            <begin position="15"/>
            <end position="325"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH30665.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="327" mass="34481" checksum="089261250E7B8DCE" modified="2017-03-15" version="1">MSNDTVRVVEISKPGGPDVLVPTTRTIDPPAHGEVQIAVAYAGVNRPDALQRAGLYDPPKGASDLPGLEASGVIQAIGEGVTGLSVGDQVCALLPGGGYAERVNTPAAHCLPVPEGMGLKEAACLPETFFTVWSNVFMRGGLKAGERFLVHGGSSGIGTTAIQLAKVFGARVFVTAGSAEKCQACVDLGAERAINYREEDFVDVMRKEDGANLILDMVGGGYIPLNLKALADDGRLVQIAFLQGPKVELNFVQMMTRRLTLTGSTLRPQSDLAKARIADELRAHVWPLLSSGQVAPVMDQEFALEDAASAHARMESSAHIGKIVLKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S0F0</accession>
    <name>A0A1M5S0F0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">AAA+-type ATPase, SpoVK/Ycf46/Vps4 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2798</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902090.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2798"/>
    <dbReference type="EnsemblBacteria" id="SHH32102">
        <property type="protein sequence ID" value="SHH32102"/>
        <property type="gene ID" value="SAMN05444003_2798"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATPase_AAA_core" evidence="3">
        <location>
            <begin position="319"/>
            <end position="452"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH32102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="644" mass="70921" checksum="0F32C508BB4B3D75" modified="2017-03-15" version="1">MSQTTDQMELREEEIRSHYAAALDLLDGFDHAPRIATATAPAAEKSSGVGTRRAFRSTTPGLATRRVARKEGIQLTSRIEAVEGGDGLVSPLQATVQQSLRRAIAIALAVGEQFAERTALKDHKRANLEGSLADGARAEFSELLTAEALVALYVFGSATAFLLAPHAGEDTVEVGEVEEFLTDNGQLALHGALWELDQDIGKHAGDEPKLVATILAFAESLMDKTAARASTAGRLEPFNTASWRVEADDFPINGFTPAQKSKGSVLTMTFKKPNEVVGNHIAKYQALKLSKMLMAYDFERKLNPFAELGGFIFTFMGDGKPGTGKTTLIQMMAGLINDYCQVAGYPFRYQNLSTDNIDSYQGKSGQNAKAFINNVVDPGVIGFGTIDDIDQLAGKRGDRQSSAGQLEITAVLMESFAGANTVVRGNCTFGMFSNYPENVDDALRQRAGARFLVDGPQTREDYIDILYLLMGKNHDIPVGQHEVFSAQEIKKAVAASFESHARPHEEGLMKVFDRVQSQIGDLDTIAKLGTYLKGIQEADERFTGRAIKNITDAVKVRAMDFELPDEWMENPELFLFKNYDTKRDMIADLRQPITVEMVIQEINRYADSEFRYADKSDEVAIENAVRDMERMEEAKRRYLEGKGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S166</accession>
    <name>A0A1M5S166_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Aldehyde dehydrogenase (NAD+)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2803</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902099.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2803"/>
    <dbReference type="EnsemblBacteria" id="SHH32220">
        <property type="protein sequence ID" value="SHH32220"/>
        <property type="gene ID" value="SAMN05444003_2803"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011408">
        <property type="entry name" value="Aldehyde_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11699:SF211">
        <property type="entry name" value="PTHR11699:SF211"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036490">
        <property type="entry name" value="Aldedh_dupl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="5">
        <location>
            <begin position="48"/>
            <end position="480"/>
        </location>
    </feature>
    <feature type="domain" description="Aldedh" evidence="5">
        <location>
            <begin position="529"/>
            <end position="745"/>
        </location>
    </feature>
    <feature type="active site" evidence="3">
        <location>
            <position position="263"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR036490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH32220.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="771" mass="82241" checksum="68FF9C603EA6928A" modified="2017-03-15" version="1">MTVKEIFETMDYGPAPESSTEALQWLADRGGIAGHYINGSWGPLRDDFTTTNPATGERLAGVTNGTEEEVARAVAAARKAQPKWEKLGGQGRARILYAIARLLQKHSRLFAVMETLDNGKPIRESRDIDVPLAQRHFYYHAGMAQLMETELPDRKAIGVCGQIIPWNFPLLMLAWKIAPALAMGNSVVLKPAEYTPLTAMVFAEICTEAGVPPGVVNIVTGDGSTGAALVNSDVDKIAFTGSTEVGRIIREATAGTGKELTLELGGKSPYIVFEDADIDSAIEGLVDAIWFNQGQVCCAGSRLLVQEGIAEDFYTRLKTRMSGLRVGDPLDKCIDIGAIVHPVQLEQISKMVSDNSEGETFQTAAPSGCFFPPTLITGLHPASTLMQEEIFGPVLAATTFRTPEEAIEIANNTRYGLAASVWSENINLALDIAPKLVCGIVWINGTNMMDAAAGFGGVRESGFGREGGWEGLVAYTKPKAKPTKLKPIQAYSGNGAPSDPLDRTAKLYIGGKQVRPDGGYSKPIYGPKGALVGHAGLANRKDVRNAVEAMNAAKGWGKTTGHLRAQILYYIAENLSARANELADRIKSLTGKAGKVEVDQTIQTLFTFAAWADKYDGQAHGVPIRGVALAMKEPVGKIAVFCEDDYPLLGAVAPMAAAMSMGNRITLIGSEPFPLLATDLYQILETSDVPGGVVNILTGGHAELAPHVAGHADIDAVWSFSGSDISGTIEKAAAGNLKRTCVNHGYDHAPPAKDLLAAATEIKNIWIPYGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S181</accession>
    <name>A0A1M5S181_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2802</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32199.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902097.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2802"/>
    <dbReference type="EnsemblBacteria" id="SHH32199">
        <property type="protein sequence ID" value="SHH32199"/>
        <property type="gene ID" value="SAMN05444003_2802"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011088">
        <property type="entry name" value="Phage_phiNM3_A0EWY4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07509">
        <property type="entry name" value="DUF1523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="156"/>
            <end position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH32199.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="226" mass="26766" checksum="0669C98161C01C4E" modified="2017-03-15" version="1">MNRLRMIFRVTVFVIVGLLLHYVLPQHDIVRITSTEVIRTDFSGFNRFFYAQADSGNVDQPTRDLRLINTDKRETFLLGFIPRDSTEVMVYRNEDTGWIWPPYFKFDSSDLQAEAASAAKEDGWHVMTHYGWRIRWASIYPNAIDIRPVEGPDVRVIPWFNIFFFTFLIIAIVTIRAMWRQFRERKVDPLLDQAGDKFDEVQAGVAERRSGVRKWMNTWRKPENRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S3P6</accession>
    <name>A0A1M5S3P6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">MHYT domain-containing protein, NO-binding membrane sensor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2839</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902153.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2839"/>
    <dbReference type="EnsemblBacteria" id="SHH33114">
        <property type="protein sequence ID" value="SHH33114"/>
        <property type="gene ID" value="SAMN05444003_2839"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007492">
        <property type="entry name" value="LytTR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012073">
        <property type="entry name" value="LytTR_MHYT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005330">
        <property type="entry name" value="MHYT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04397">
        <property type="entry name" value="LytTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03707">
        <property type="entry name" value="MHYT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036615">
        <property type="entry name" value="MHYT_LytTR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00850">
        <property type="entry name" value="LytTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50930">
        <property type="entry name" value="HTH_LYTTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50924">
        <property type="entry name" value="MHYT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="44"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="74"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="108"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="143"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="170"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="211"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="domain" description="MHYT" evidence="2">
        <location>
            <begin position="8"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="domain" description="HTH LytTR-type" evidence="3">
        <location>
            <begin position="260"/>
            <end position="365"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50924"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50930"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH33114.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="373" mass="40080" checksum="7CC9CE4F8B589A84" modified="2017-03-15" version="1">MEFLDVNHNSFLVVMSCIVAFAAGFTGLSLTRDLASKNDFEKKMLIALASVALGGGIWAMHFVAMLGLQMPILFYYDAAITLISALTAILIVSAALILLHFTERTTRTIVISGAIVGSGILAMHYIGMAGLELCRAVYTTEGIVVSLLAAIVLCVVAFGIAYGERTNKNIFLGTIGFAAAVASVHFLAMAGTNFVAVPSGSEFGPLMSNETLALGVIFFSFMIFGACLWVSITYLPGSLDEQDAVEEPQEAEVIQPILQIPCEREGAKVFVAADDVLFVRADGHYTQIYTRAERLFCAWPITEATKRLLPKGFLQTHRSYLVNPAKVARFERSKDKGICIFDDDGSPSAPVSRSKLKIVQDTLASQVGAIGAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S3V1</accession>
    <name>A0A1M5S3V1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Carbon monoxide dehydrogenase, small subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2841</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33166.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902156.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2841"/>
    <dbReference type="EnsemblBacteria" id="SHH33166">
        <property type="protein sequence ID" value="SHH33166"/>
        <property type="gene ID" value="SAMN05444003_2841"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002888">
        <property type="entry name" value="2Fe-2S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036884">
        <property type="entry name" value="2Fe-2S-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01799">
        <property type="entry name" value="Fer2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47741">
        <property type="entry name" value="SSF47741"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="1">
        <location>
            <begin position="5"/>
            <end position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH33166.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="164" mass="17864" checksum="8C3BC3053BDEF0F2" modified="2017-03-15" version="1">MSSKKHYSITVNGKQEEFLAEPRELLIYTLRERLNITGPHIGCETSHCGACTVTIDGKSVKACTMFVAQADGKYVTTIEGIGGLDDLHPLQNAFKEHHGLQCGYCTPGMITRATKLLEENPNPTEEEIRFGMAGNICRCTGYQNIVKSIQAAAAEMNAAKEAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S4G0</accession>
    <name>A0A1M5S4G0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2850</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902171.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2850"/>
    <dbReference type="EnsemblBacteria" id="SHH33369">
        <property type="protein sequence ID" value="SHH33369"/>
        <property type="gene ID" value="SAMN05444003_2850"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006597">
        <property type="entry name" value="Sel1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08238">
        <property type="entry name" value="Sel1"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SMART" id="SM00671">
        <property type="entry name" value="SEL1"/>
        <property type="match status" value="5"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012386828" evidence="1">
        <location>
            <begin position="24"/>
            <end position="271"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH33369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="271" mass="30300" checksum="5A55B5256FFA1359" modified="2017-03-15" version="1">MNLIKSACLAVALSATTAFVAVAQDYESGLQAFEKEDYLTALQEWRPLAEEGNVEAQYYLGIIFDNGYGVEQDYKEAAHWYEKAANQGDAYAQYNLGVMFEHGEGVQQNYSRAVELYRSAADQGDAQAQNNLGWLHQNGRGVPQDYAEAVKWYRKAAEQGDTYAYTNLGFMYQQGYGVPQDDAEALNWYRTAAEQGDARAQTNLGFMYQQGDGIPQDYALAHMWYNLASANGDERAADFRSNLAKQMTPEDISRAQSMATECLNSKYENCG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SDY1</accession>
    <name>A0A1M5SDY1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_2915</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36645.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902310.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2915"/>
    <dbReference type="EnsemblBacteria" id="SHH36645">
        <property type="protein sequence ID" value="SHH36645"/>
        <property type="gene ID" value="SAMN05444003_2915"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002197">
        <property type="entry name" value="HTH_Fis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002078">
        <property type="entry name" value="Sigma_54_int"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02954">
        <property type="entry name" value="HTH_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14532">
        <property type="entry name" value="Sigma54_activ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50045">
        <property type="entry name" value="SIGMA54_INTERACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Response regulatory" evidence="7">
        <location>
            <begin position="4"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma-54 factor interaction" evidence="6">
        <location>
            <begin position="144"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="5">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH36645.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="408" mass="44360" checksum="FE93BAC4C525D1AF" modified="2017-03-15" version="1">MINRVLLIDDDKEVRDALSQSMSLADLEPQVCGSFIEAKDHLTADFQGVVVSDIRMPGRDGFHLLNYAKSVDADLPVILLTGEADIPMAVQGMSEGAFAFLEKPCAPADLIQKVETALTQRRIALDARQQRHILDSGDAAARMLIGTSVQSESLRERVRAVAKTSAEVLVNGAPGSGTPKVAEVIHLLSPVARHPFVKRTGGALDLEGLRDAVDQAGKGSLFIDEVGALPMPVQFALLDALESGLDIRLIAGTTKNLKSHIEDGSFSAELFYRLDLMNVYIPSLKERPEDIPVMFHHYVAQACEQAALPQPEIKPETLANIMAQDWPGNARSLMSAAMRFSLGIEDTVATEELGLAEQMSAVERSLLIAALRKHDGHATATATALKLPRKTFYDKLARHGLRAEDYRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SFU3</accession>
    <name>A0A1M5SFU3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Lactate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2944</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37335.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2944"/>
    <dbReference type="EnsemblBacteria" id="SHH37335">
        <property type="protein sequence ID" value="SHH37335"/>
        <property type="gene ID" value="SAMN05444003_2944"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016616">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006139">
        <property type="entry name" value="D-isomer_2_OHA_DH_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029753">
        <property type="entry name" value="D-isomer_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029752">
        <property type="entry name" value="D-isomer_DH_CS1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006140">
        <property type="entry name" value="D-isomer_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00389">
        <property type="entry name" value="2-Hacid_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02826">
        <property type="entry name" value="2-Hacid_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00065">
        <property type="entry name" value="D_2_HYDROXYACID_DH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00671">
        <property type="entry name" value="D_2_HYDROXYACID_DH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2-Hacid_dh" evidence="4">
        <location>
            <begin position="6"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="domain" description="2-Hacid_dh_C" evidence="5">
        <location>
            <begin position="108"/>
            <end position="284"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005854"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003719"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00389"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH37335.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="315" mass="33906" checksum="64B69004282EE7FA" modified="2017-03-15" version="1">MKRLLLTRKFPDANIAAAEAHFEVTVMDREEGLTPDEAKDALASYDAILATLGDQFSAAAFTEPTRCKMIGNFGVGYNHIDVEAARAAGVFVANTPEVVTDATADIAMTLILATCRRAGEGERLVRAGKWDGWTPTFMLGMHVTGKTLGIVGMGRIGQAVARRAHFGFEMPIKYFNRSQKSVDFPATQVETLNQLMSECDIIVVTVPGGGANTQLINREALAAMKPTGIFVNVARGDVVDEDALIDVLEAGHIAGAGLDVFVKEPFVPERLRALENAVLLPHLGTSALEVREQMGQMALDNILAWSKGETPPQLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SHF5</accession>
    <name>A0A1M5SHF5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2970</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902398.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH37895">
        <property type="protein sequence ID" value="SHH37895"/>
        <property type="gene ID" value="SAMN05444003_2970"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="56"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="81"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="111"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH37895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="141" mass="15450" checksum="EC705AB90A7BC6FB" modified="2017-03-15" version="1">MKTPIHLWIVGVVSLVWNSGGAFDYVMSKTQNADYLANLPAEAIEFLNNTPLWFDAAWAIGVWFSVLGSLLLLFRSRLAGSAFALSLVGLIVSSVYTYGLAEQRTFEAGGTAALIFSIAIPIVLILLWIYARAMTRRGVLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SIC5</accession>
    <name>A0A1M5SIC5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2982</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38150.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902415.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH38150">
        <property type="protein sequence ID" value="SHH38150"/>
        <property type="gene ID" value="SAMN05444003_2982"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH38150.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="65" mass="7250" checksum="9C2A368EE815048B" modified="2017-03-15" version="1">MTKDFIAIARNRRLIALNEIENRKRNGATIAKIHTLPDLTTRHVDATFRTRRTVKPAAAAVALVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SJY1</accession>
    <name>A0A1M5SJY1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3007</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38700.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902449.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH38700">
        <property type="protein sequence ID" value="SHH38700"/>
        <property type="gene ID" value="SAMN05444003_3007"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH38700.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="153" mass="17413" checksum="B622A3CDE43BC531" modified="2017-03-15" version="1">MASPRDQEAFDIVQDLLDRTDEAFFAADMPVLASTLHLPYHFGVGSSVIRIETYEELVAAFDWYRTYVTDLGATNCKRTCLKAKFKTQDVIIATFDLTFFDGDGKVVLAAEPSETVAMYLGLEWRFCTSDSKTKIDTDFEKPVRDEMNKARKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SK96</accession>
    <name>A0A1M5SK96_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">3-hydroxyacyl-CoA dehydrogenase</fullName>
            <ecNumber evidence="2">1.1.1.35</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_3006</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>a (3S)-3-hydroxyacyl-CoA + NAD(+) = a 3-oxoacyl-CoA + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:22432"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57318"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:90726"/>
            <dbReference type="EC" id="1.1.1.35"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Lipid metabolism; fatty acid beta-oxidation.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.35" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38678.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902447.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3006"/>
    <dbReference type="EnsemblBacteria" id="SHH38678">
        <property type="protein sequence ID" value="SHH38678"/>
        <property type="gene ID" value="SAMN05444003_3006"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00659"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003857">
        <property type="term" value="F:3-hydroxyacyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070403">
        <property type="term" value="F:NAD+ binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006635">
        <property type="term" value="P:fatty acid beta-oxidation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006176">
        <property type="entry name" value="3-OHacyl-CoA_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006108">
        <property type="entry name" value="3HC_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00725">
        <property type="entry name" value="3HCDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02737">
        <property type="entry name" value="3HCDH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="4" id="KW-0442">Lipid degradation</keyword>
    <keyword evidence="6" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="5" id="KW-0520">NAD</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="3HCDH_N" evidence="9">
        <location>
            <begin position="328"/>
            <end position="506"/>
        </location>
    </feature>
    <feature type="domain" description="3HCDH" evidence="8">
        <location>
            <begin position="510"/>
            <end position="605"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013000"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022963"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023693"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00725"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH38678.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="732" mass="78811" checksum="B8D76B222AEF11B2" modified="2017-03-15" version="1">MTDFTMATDADGVAVITWDTVGKSMNVMNQQGFVDLNALVNEALVDDAVKGIVITSGKEGSFAGGMDLNIIAKMKESAGENPAAGLMDGLMQCHGVLRNIERAGMDPKTNKGGKPIAAALPGTALGIGYEIPLSCHRIFAADNPKAKIGLPEIMVGIFPGMGGTTRLVRKMGAMAASPFLLEGKLSDPKKAKAAGLIDEVVPADELLSAAKAWVLSEPTIVKPWDEKGYKMPGGAPYHPAGFMTYVGASAMINGRTKGVYPAAKALLSAAYEGALVPFDTAIKIEARWFTHVLMNPSSEAMIRSLFINKEALEKGANRPDVDDQKVKKVGVLGAGMMGAGISLVSALAGIEVVLIDRDQDAADKGKSYTADYMDKGIKRKKATEEKKEAVLGLINATTDLEALKGCDLIVEAVFEDVGVKADMTKKVEAIVGEDCIFATNTSTLPITELAKASVRPEQFIGIHFFSPVDKMMLVEIIKGKETGDRAVAKSLDFVRQIRKTPIVVNDERFFYANRCIIPYINEGIRMVKEGVEPALIENAAKLVGMPLGPLQLTDETSIDLGVKIAKATKAAMSDDYPNEEVDQVLFWMFDEGRLGRKSNSGFYAYDEKGKRQGLWEGLADQYPVADEQPELLEVQHRLLFAQVLEAVRALEENVLEDIREGDVGAILGWGFAPWSGGPFSWLDIIGAPYAAERCDQLAATHGERFATPNLLREMADKNVSFYSIYGAGKAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SKW7</accession>
    <name>A0A1M5SKW7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3030</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH39237.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902479.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3030"/>
    <dbReference type="EnsemblBacteria" id="SHH39237">
        <property type="protein sequence ID" value="SHH39237"/>
        <property type="gene ID" value="SAMN05444003_3030"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH39237.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="174" mass="19083" checksum="46BAA353F5EB8898" modified="2017-03-15" version="1">MSFGLTKIIGFIFVPLGLAGCIETTDLSSSVVLSPSQNVNAPKASGFVGDIETNDKGVHIVRNHGGGRIISVEAQRRRLLDWGGPVEIRGFCNSACVILTTLPNACVAPRSRIGFHSSNINFGPVGNAQIVRYLRGGVRKKFLEEWQFVPHSDIHHIWGERYAELDRQTKVCGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SL10</accession>
    <name>A0A1M5SL10_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3023</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH39100.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902470.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH39100">
        <property type="protein sequence ID" value="SHH39100"/>
        <property type="gene ID" value="SAMN05444003_3023"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008972">
        <property type="entry name" value="Cupredoxin"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49503">
        <property type="entry name" value="SSF49503"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012047853" evidence="1">
        <location>
            <begin position="23"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH39100.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="147" mass="16578" checksum="CFC6AA26D4063A69" modified="2017-03-15" version="1">MNKLVSTVLATTLVALPLAASAQSTQHEVRIEKRGYFPQTIHVQPGDTIRFVNKSGNWARLYSENYNDNYSGYSSSNPCNTDSNGNYYFAGAKDGWNTDWISNNNSTVITIHDCTETDLRSPYVYQYGGNNSYYRGEITFDEPYLGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SLW9</accession>
    <name>A0A1M5SLW9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acyl-coenzyme A thioesterase PaaI, contains HGG motif</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3015</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38893.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902461.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3015"/>
    <dbReference type="EnsemblBacteria" id="SHH38893">
        <property type="protein sequence ID" value="SHH38893"/>
        <property type="gene ID" value="SAMN05444003_3015"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006683">
        <property type="entry name" value="Thioestr_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03061">
        <property type="entry name" value="4HBT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4HBT" evidence="1">
        <location>
            <begin position="62"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH38893.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="163" mass="18464" checksum="F96BFD6A3EF06E12" modified="2017-03-15" version="1">MAKRPEPVQVVKQRRDAVLQSLVEGVPYIQFMGIHFDRRGDELTGVMPYADKLIGNPMLPALHGGATAAFLEVTAIIELTWSSLWVRMEAGEEIDISSHRLPKTIDFSVDYLRSGLPRDAYARARVNRSGRRYASVHVEAWQDNRTRLFAQATGHFLMPQKDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SMY1</accession>
    <name>A0A1M5SMY1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3034</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH39303.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902483.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3034"/>
    <dbReference type="EnsemblBacteria" id="SHH39303">
        <property type="protein sequence ID" value="SHH39303"/>
        <property type="gene ID" value="SAMN05444003_3034"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021335">
        <property type="entry name" value="DUF2948"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11164">
        <property type="entry name" value="DUF2948"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH39303.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="159" mass="17449" checksum="76C8E42A24A419EF" modified="2017-03-15" version="1">MSKDAKFEDGVERPLRLMAVDAEDLQVVSALVQDAVFPASEMRWTPADRRFAILLNRFRWEDADGANSRRRDFERVQAVLMVEGVEGVQSQGVSKGDPDTVLSLLSMEFDGSDDGAGRVIFNLAGDGAIACKVDALEVVLKDVTRPYIAPSRKAPSHPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SQX4</accession>
    <name>A0A1M5SQX4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Carbohydrate ABC transporter membrane protein 2, CUT1 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_3051</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH40922.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902575.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3051"/>
    <dbReference type="EnsemblBacteria" id="SHH40922">
        <property type="protein sequence ID" value="SHH40922"/>
        <property type="gene ID" value="SAMN05444003_3051"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="91"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="119"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="148"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="202"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="257"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="86"/>
            <end position="276"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH40922.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="293" mass="32885" checksum="0B881B0DCA636A03" modified="2017-03-15" version="1">MATKAQSRLSPLKVVSIIFVIIWVLLASFPFLWTVWGSFKVQGDFFSKADWTNAIFGVQTLEQTGSRFTLDGYYGAWVEEEFWRSVINTSIVVFFTVTISLTIGTLGGYALARSGYKYAFWLLMVALVFRAMPHITLVSGYLLPFFEWNIWGILPTTIIVLVAINQPFTLWMLHSFFLNIPKDMDEAAMVDGCTRFQAFRHVIIPVMWPGVITTGLFSFLLAYNDFTVTRMLLSQENETIIPKIQSFLGSAQVEGNVMFAVAAVVSATVPLFILVMFFQRQIVSGLTAGAVKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SS74</accession>
    <name>A0A1M5SS74_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Starvation-inducible DNA-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_3070</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the Dps family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902603.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH41277">
        <property type="protein sequence ID" value="SHH41277"/>
        <property type="gene ID" value="SAMN05444003_3070"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008199">
        <property type="term" value="F:ferric iron binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01043">
        <property type="entry name" value="DPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002177">
        <property type="entry name" value="DPS_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012347">
        <property type="entry name" value="Ferritin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008331">
        <property type="entry name" value="Ferritin_DPS_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42932">
        <property type="entry name" value="PTHR42932"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00210">
        <property type="entry name" value="Ferritin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005900">
        <property type="entry name" value="Dps"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01346">
        <property type="entry name" value="HELNAPAPROT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="SSF47240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ferritin" evidence="3">
        <location>
            <begin position="18"/>
            <end position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009497"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003875"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00210"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH41277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="156" mass="16853" checksum="46ABF1C9B187DFF6" modified="2017-03-15" version="1">MNQTAATLASDAQSEICDALNQSVAEVVVTTMLAQNFHWNVKGMAFGPLHAMFQEIYEDHFVAQDDLAERVRALGGHAEGQLSGMIARSKVEEHDGHASDKEMIKTLAEAQRTVAATLAGTAAIAAKHGDLLTEDLCIGRGQTHEKFAWLLSAHLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5ST51</accession>
    <name>A0A1M5ST51_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Carbohydrate ABC transporter membrane protein 1, CUT1 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_3093</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41709.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902640.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3093"/>
    <dbReference type="EnsemblBacteria" id="SHH41709">
        <property type="protein sequence ID" value="SHH41709"/>
        <property type="gene ID" value="SAMN05444003_3093"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035277">
        <property type="entry name" value="MalF_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="29"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="96"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="127"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="178"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="224"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="288"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="90"/>
            <end position="305"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH41709.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="315" mass="35908" checksum="8A141B3C07237E6D" modified="2017-03-15" version="1">MTASPITKAAQHTPDGIAKKIRGLSDRSIAWIFVAPTIFLLLAVNIFPLIWTIRLSFTNYRVNRPNKEVEWVGLRNYERILNDPDIWHTMQATAHFLFWTILIQVLIGFALAYLINNKFKGNDLWTTIIVFPMMLSPAVVGNFWTFLYQPQIGLFNYVVTFFTGGDPADFSMIGDVYLAPWAIIIADTWMWTPFVMLICLAGLRSIPDSIYEAAECDRASKWRQFWTITIPMALPFLMLAVLFRGIENFKMFDLVVQLTGGGPGNTTTLTSIDLKREAFEKWRTGYSSAYAVILFVTVFGLASIYVKALNKVKER</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SWJ4</accession>
    <name>A0A1M5SWJ4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Probable GTP-binding protein EngB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">engB</name>
        <name evidence="10" type="ORF">SAMN05444003_3137</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Necessary for normal cell division and for the maintenance of normal septation.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42453.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902701.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3137"/>
    <dbReference type="EnsemblBacteria" id="SHH42453">
        <property type="protein sequence ID" value="SHH42453"/>
        <property type="gene ID" value="SAMN05444003_3137"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000917">
        <property type="term" value="P:division septum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01876">
        <property type="entry name" value="YihA_EngB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00321">
        <property type="entry name" value="GTPase_EngB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030393">
        <property type="entry name" value="G_ENGB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019987">
        <property type="entry name" value="GTP-bd_ribosome_bio_YsxC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03598">
        <property type="entry name" value="GTPase_YsxC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51706">
        <property type="entry name" value="G_ENGB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="8" id="KW-0132">Cell division</keyword>
    <keyword evidence="6 8" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 8" id="KW-0717">Septation</keyword>
    <feature type="domain" description="EngB-type G" evidence="9">
        <location>
            <begin position="43"/>
            <end position="216"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009638"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023210"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH42453.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="216" mass="23397" checksum="3E5DE85E1510087D" modified="2017-03-15" version="1">MDLTFPLVVEPDADALEKGRLLFAGETDFLKGVVAMSGLPPADRVEVCFAGRSNVGKSSLINALTGRKGLARASNTPGRTQEINFFTARDRYIVDLPGYGFANAPVAVVEKWQNLLKQYLSGRQTLRRVFVLIDARHGAKAVDEEIMTLLDKSAVTFQVVMTKIDKVKKGALDDALAKTRKALSKHPAAYPELILTSSEKGEGIPTLRAIIAGIDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T2X8</accession>
    <name>A0A1M5T2X8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alpha/beta hydrolase fold</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3213</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45144.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902855.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3213"/>
    <dbReference type="EnsemblBacteria" id="SHH45144">
        <property type="protein sequence ID" value="SHH45144"/>
        <property type="gene ID" value="SAMN05444003_3213"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013094">
        <property type="entry name" value="AB_hydrolase_3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07859">
        <property type="entry name" value="Abhydrolase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Abhydrolase_3" evidence="1">
        <location>
            <begin position="65"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH45144.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="265" mass="28778" checksum="6263AF55C07C9F74" modified="2017-03-15" version="1">MIDWDDAFDNSGYVPEASEIGAAWVAAAEAFRTKQPYAVLDHPYGSGDRERFDLFLPEGLPKGVVVFVHGGYWHMRAKSDWSHFSKGFLNHGWAVAIVGYTLAPTVRISQITQSIAAAVAEVAKTVEGPLRLVGHSAGGHLVSRMMCQGVLSDGLIARVQRVVSVSGVHDLRPLVGTRMNDTLGLTKAEALAESSALLEPADVPVTFWVGADERPEFLRQNRLIAEGWGLKGADVSTVYQPAENHFTVINGLVDENSKLVCEVLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T3S8</accession>
    <name>A0A1M5T3S8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycine/D-amino acid oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3225</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45419.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902877.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3225"/>
    <dbReference type="EnsemblBacteria" id="SHH45419">
        <property type="protein sequence ID" value="SHH45419"/>
        <property type="gene ID" value="SAMN05444003_3225"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAO" evidence="1">
        <location>
            <begin position="37"/>
            <end position="399"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH45419.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="445" mass="47822" checksum="E7D72F69534001BA" modified="2017-03-15" version="1">MQINVAKQPVDPGPAAWREFLDAPEAFPSLDRKITADWLVVGAGFAGLSAARRLSQTGPGDRIVVLDATRVAEGPAGRNSGFMIDLPHDLASSDYSGGVEHDKAITSDNRFAIDFAAEMAAEFGFGEDVFSRCGKINGAATAKGHQHNVEYAKHLAAIGEPTEMMDAKAMEEVTGMSYYHSGLFTKGTAIIQPAAFVHGVAKGISSNRVQIFEGSGVRSLRRDGDWVAETTNGSVTAPKVILAVNGHLNSFGFLPNRLMHVFTYASVTRRLTLDEVAVLGGQAPWGITPADPLGTTVRRLSGPMGDRILIRNRFTFDPTMEVDQRRIERIGKDHDRAFAARFPMLKGVPMEYRWGGRLCLSRNNVGVVGELEDGLYCACCQNGLGTTRGTLGGIMAADLATGRGSERLDRALAAEAPSRLPPKPIATSGARAVLKWQEWKAGAEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TA77</accession>
    <name>A0A1M5TA77_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Citrate synthase (unknown stereospecificity)</fullName>
            <ecNumber evidence="2">2.3.3.16</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_3299</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Carbohydrate metabolism; tricarboxylic acid cycle; isocitrate from oxaloacetate: step 1/2.</text>
    </comment>
    <dbReference type="EC" id="2.3.3.16" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000009">
        <property type="protein sequence ID" value="SHH47624.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072903008.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000009.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3299"/>
    <dbReference type="EnsemblBacteria" id="SHH47624">
        <property type="protein sequence ID" value="SHH47624"/>
        <property type="gene ID" value="SAMN05444003_3299"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00223">
        <property type="reaction ID" value="UER00717"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036440">
        <property type="term" value="F:citrate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016142">
        <property type="entry name" value="Citrate_synth-like_lrg_a-sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016143">
        <property type="entry name" value="Citrate_synth-like_sm_a-sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002020">
        <property type="entry name" value="Citrate_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036969">
        <property type="entry name" value="Citrate_synthase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11739">
        <property type="entry name" value="PTHR11739"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00285">
        <property type="entry name" value="Citrate_synt"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00143">
        <property type="entry name" value="CITRTSNTHASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48256">
        <property type="entry name" value="SSF48256"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="246"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004751"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012972"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH47624.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="270" mass="29053" checksum="5D87E4A850A93A85" modified="2017-03-15" version="1">MSQDADNIRKWWQTSIIDMEPGKIAFRGHPIEGLIGNVSFPQMIWLMTRGDLPTKAQALLFEAALVAGVDHGPQAPSIAAARMAATCGVGLNNVMATGVNMLGDVHGGAGEQCAELYYEVAQAMNEGVELEEAVEAALQNWRETRGKIVSGFGHRFHKPVDPRAPCLMQLVREAAAEGTVSGQFAEIGEAIQRAIGRSRGADIAMNIDGATAVIFCELGFPAPLSRGLFCLSRSVGILSHGWEQMQQGGRNKGPMPPNYLPLYQPKDPDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TDW3</accession>
    <name>A0A1M5TDW3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Sulfopyruvate decarboxylase subunit alpha</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3331</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000015">
        <property type="protein sequence ID" value="SHH48871.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072903055.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000015.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3331"/>
    <dbReference type="EnsemblBacteria" id="SHH48871">
        <property type="protein sequence ID" value="SHH48871"/>
        <property type="gene ID" value="SAMN05444003_3331"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050545">
        <property type="term" value="F:sulfopyruvate decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022502">
        <property type="entry name" value="Sulfopyruvate_deCO2ase_alpha"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03845">
        <property type="entry name" value="sulfopyru_alph"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH48871.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="168" mass="18853" checksum="2C116C86D61E6195" modified="2017-03-15" version="1">MNIDKKITDDLVANDISFVTTVPCKQLAGVIEEIDQHPDIFHIPSNKEDEGMGLCAGAWMGGKRPMIIMQNTAIGVTINTLATLTQYYRMPLPMLISYRGELREPVACQVEMAVHTKALLAQMNIPTYHFHNQSDVEELDMILKYTFMCNKPVAILTDANFWGGYGDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TF34</accession>
    <name>A0A1M5TF34_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3332</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000016">
        <property type="protein sequence ID" value="SHH48953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH48953">
        <property type="protein sequence ID" value="SHH48953"/>
        <property type="gene ID" value="SAMN05444003_3332"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004803">
        <property type="term" value="F:transposase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002514">
        <property type="entry name" value="Transposase_8"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01527">
        <property type="entry name" value="HTH_Tnp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="53"/>
            <end position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH48953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="92" mass="10772" checksum="93FBA533DB61FB38" modified="2017-03-15" version="1">MGIKRHKPEEIVTKLRQVEVLCGQGMPRADAIRQVQITEQTFYRWRKQYGGMGTDQLKELKRLQKENDRLRRAVSDLTLDKLILSEAARGNY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L0J7</accession>
    <name>A0A1M5L0J7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Carbon-monoxide dehydrogenase large subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0029</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58537.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898356.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0029"/>
    <dbReference type="EnsemblBacteria" id="SHG58537">
        <property type="protein sequence ID" value="SHG58537"/>
        <property type="gene ID" value="SAMN05444003_0029"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000674">
        <property type="entry name" value="Ald_Oxase/Xan_DH_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036856">
        <property type="entry name" value="Ald_Oxase/Xan_DH_a/b_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016208">
        <property type="entry name" value="Ald_Oxase/xanthine_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008274">
        <property type="entry name" value="AldOxase/xan_DH_Mopterin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037165">
        <property type="entry name" value="AldOxase/xan_DH_Mopterin-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11908">
        <property type="entry name" value="PTHR11908"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01315">
        <property type="entry name" value="Ald_Xan_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02738">
        <property type="entry name" value="Ald_Xan_dh_C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01008">
        <property type="entry name" value="Ald_Xan_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54665">
        <property type="entry name" value="SSF54665"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56003">
        <property type="entry name" value="SSF56003"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ald_Xan_dh_C" evidence="1">
        <location>
            <begin position="20"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG58537.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="766" mass="83052" checksum="BF7CF554816DDA58" modified="2017-03-15" version="1">MEKFGKSQPVKRFEDRRFLTGQGRYVDDLAPESALYAFFLRSTHGHGEIKGIYADDARDMPGVELIVTVADLEADGVNLKMSGSLVTQSDGSKGADPLRPLLAKDRVRYVGEPIAMIIAHSLSEAKDAADAIDIDIDDLPAHTALEIGGELIHEEAPDNLVFDWDLGRKEETEQALSDAARVVELDVYDNRIICNAMEPRGCYAELQDGRLHVAVNGQGVWGTKSELARQLHIPKEDIRVTNPDVGGGFGMKAMHYGETILVAYAAGKLQRPVRWMSERTEGMLTDNGGRDLMTAATLGFDQNNKLIAYKVDNLINMGAYNSTFAQNIQTDLFSKVLMGTYDVQNAHMRTRGVYTNTTPIDAYRGAGRPEAIFILERAMDEAARQLGVDPWELRRKNFIQPNQFPYTSVSKVTYDVGDFERVLDKAAEEADLAGFKARKDASARAGKYRGIGLCYYIESILGAPTETTTVEFENDGALIFVGTQSNGQGHETVYAQYLADQSGIPVDKITVVQGDSDRIATGGGTGGSRSGTVQNTATLAAVEQMVASFSAFLAEQEGVSVDDVSFDDERFRIAGSNLSPTMLEAAELAEDAGQTELLRHSATITLDDRSFPNGAHVAEVEIDPETGVTDVVRYTVVDDFGNLLNPMIVAGQVHGGVAQGLGQVLTEHVVYDEDGQLLTASFMDYAMPRADDLPMIDFTTEGTPSLYNPLGMKGCGEAGTVGAIAAVTNAVLDGLWDAGVRQLDLPYTPHRVWTALQDAQADSVAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L3Z9</accession>
    <name>A0A1M5L3Z9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Amino acid ABC transporter membrane protein 1, PAAT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0085</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59660.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898427.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0085"/>
    <dbReference type="EnsemblBacteria" id="SHG59660">
        <property type="protein sequence ID" value="SHG59660"/>
        <property type="gene ID" value="SAMN05444003_0085"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="29"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="71"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="139"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="189"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="249"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="33"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG59660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="294" mass="32791" checksum="AF5EE77F387FDD03" modified="2017-03-15" version="1">MFAYCVDPASLEGLTWLSCYLTTGKHMNIYFAVGTVLLLLAITAPTALAFGFGGASAARSSVAPLRWIGKAYISIVRGVPDIAFFLFFVIALDQMFEYIRHRWKCPEWTDPVYQGNDFVVCTAAKLPLGSAPQWQHETYGFLLAVLTFSIVFGAFAANVLFGAMRAVPKAQLETAAAYGMTQRQINRRILIPQMWVYALPGLSNLWMVLIKATPLLFLLGVEDIVYWARELGGIKTPQFTDYPHGDWRMWYFGALLVFYLLFTKVSEVVLDRIMARLTRGQATAAGEAQRKAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L445</accession>
    <name>A0A1M5L445_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0095</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59862.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898443.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0095"/>
    <dbReference type="EnsemblBacteria" id="SHG59862">
        <property type="protein sequence ID" value="SHG59862"/>
        <property type="gene ID" value="SAMN05444003_0095"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="198"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="238"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="349"/>
            <end position="399"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="435"/>
            <end position="457"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="498"/>
            <end position="525"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="557"/>
            <end position="630"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="209"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="265"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="366"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="573"/>
            <end position="607"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG59862.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="736" mass="79729" checksum="76A6DFFBBBD2BB13" modified="2017-03-15" version="1">MVESSKILTVSYGTFSCTLEGFDDSFSTMKAIAEYFRDLAERDRYFGAEPPTPDAEMLTRIAEREIERRVEARTDDSGIVLRAAEAVAEDAANVPAMPPVAQPPAEETVAEIDVAEAVEAAEAKVSEIEAEEVEAIEPADFQAESDEEMDVAAETTFEDMAPENMDRAEPHPDASSVAAKLQRIRAVVGGAAGAELIANATDTDNAPEPFDFTDTEDAEADEADAEVPEIEEILEEETLEAEEDAAEEQLASEEPSAVDAVEDVATEETVTEDAIEEMATEEESVAVETTDDLEAAEELVDEDQGDEEAEAFFAQAEEDDDAVTDEEVAAETPFSAIDTALIASIAAGAAVSGRDDDDADVEAVDDKVEDEPKPSLRARILRSKTPEAEDVAETDEEPSEIKLEDVVEAIDSTSTEVEEEVAAETTEGVSIATLDGADELKDFDDLPETSLSDEDEAELQADLSAALEDDNMSETLDIEEETAEAAEEVAEIEAVDEAPLRLTETVPSEDAVASKSLPENSDEAMSRIMDQADEQLSEPEGSRRRNAIAQLKAAVAATEAAKQLGDAAATPEEAQQEFRKDFDEVVRPRRADSLPRTEVRKERPRPAPLKLVASQRIDDDANTNASPVAPRRIAAQDDAAASSNNFAEYAEEVGAKELPDLLEAAAAYSAYVEGNEDFSRPQIMRWVQQSAAEEFSREDSLRSFGTLLRDGRISKVRNGRFQVTEQTRFRPEQKAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L5N3</accession>
    <name>A0A1M5L5N3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ABC transporter, phosphonate, substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0088</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59723.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898430.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0088"/>
    <dbReference type="EnsemblBacteria" id="SHG59723">
        <property type="protein sequence ID" value="SHG59723"/>
        <property type="gene ID" value="SAMN05444003_0088"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG59723.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="245" mass="26467" checksum="3925FF614F7B9D98" modified="2017-03-15" version="1">MIASLPMYWREETADGWLAFWDLVREGLPDLPDLMSPDELPKDWSQHWLDAELALSMTCGLPFRTMLRDKVQYVGTLTIGPTEASGHYRSAVVTRAGQDLNAPLTLAYNSGDSQSGWAASQTFPSSGDHLSYGSLVETGSHAASLHAVASGHADVAFLDEVTWRLLQRYDKAAQSVAVQGYTGHTPALPLIAALGNDVAPLRAAITHAAESQMSHFSDQIGGDLSFNVLNEAEYFAVPLPTPPLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L718</accession>
    <name>A0A1M5L718_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">3-hydroxyisobutyrate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0136</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60760.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900332.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0136"/>
    <dbReference type="EnsemblBacteria" id="SHG60760">
        <property type="protein sequence ID" value="SHG60760"/>
        <property type="gene ID" value="SAMN05444003_0136"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016054">
        <property type="term" value="P:organic acid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006115">
        <property type="entry name" value="6PGDH_NADP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015815">
        <property type="entry name" value="HIBADH-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029154">
        <property type="entry name" value="NADP-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14833">
        <property type="entry name" value="NAD_binding_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03446">
        <property type="entry name" value="NAD_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000103">
        <property type="entry name" value="HIBADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD_binding_2" evidence="3">
        <location>
            <begin position="2"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="domain" description="NAD_binding_11" evidence="4">
        <location>
            <begin position="161"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="289"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR000103-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF14833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG60760.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="316" mass="33706" checksum="459FB651041D3D8F" modified="2017-03-15" version="1">MKVGFIGLGNVGGKLSGSLLRNGVDLTVHDLNEALVDSFVEKGAKKADGPAQLMRDCDAVITCLPSPAASAAVMDEMLPEVTAGKIWMEMSTTDEAEVKRLGALVLERAGAAVDCPVSGGCHRADTGNISIFAGCDRETFERILPFLKTMGRRVLHTGDLGSASVLKVVTNYLATANLITCCEALVTAKAAGMDLNTTYEAIKISSGTSFVHETESQVILNGSRDISFTMDLVKKDVGLFKEVADRANVPLEIAPMLVEIFDDGIARYGERELSPNIVKRLEEATGLDIRAPGFPPEMTDDEPEEPGYEVVPQGKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L7B8</accession>
    <name>A0A1M5L7B8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized membrane protein YqhA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0148</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898507.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG61004">
        <property type="protein sequence ID" value="SHG61004"/>
        <property type="gene ID" value="SAMN05444003_0148"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005134">
        <property type="entry name" value="UPF0114"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03350">
        <property type="entry name" value="UPF0114"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF026509">
        <property type="entry name" value="UCP026509"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="65"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="106"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="131"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG61004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="159" mass="17165" checksum="493A8514322E5A66" modified="2017-03-15" version="1">MANILGASRFLIILAVIGALIAATTMMIFGLLETINLVQKTIVTGEVSRKVAKALSLEFIEIIDLFLLGTVFYIVAIGLYELFISPNITVPKWLSIKTLDDLKNKLIAVVIVVLGVLFLGQIVSWDGERDLLGYGAAIALVIAGLTYFLTSHKAGGDKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L8P3</accession>
    <name>A0A1M5L8P3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0163</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61346.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG61346">
        <property type="protein sequence ID" value="SHG61346"/>
        <property type="gene ID" value="SAMN05444003_0163"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="53"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG61346.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="88" mass="9547" checksum="3A991C540F9E779D" modified="2017-03-15" version="1">MKVNRVRVVWLVTLAIGAFAVIVFVNDTSRAYNDILESMKRYAEDNPSLVVERGGAPPSALESNAAPSQIEVTRDSTQDLTAIVPVSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LAN9</accession>
    <name>A0A1M5LAN9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized conserved protein, DUF427 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0190</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62005.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898559.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG62005">
        <property type="protein sequence ID" value="SHG62005"/>
        <property type="gene ID" value="SAMN05444003_0190"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.150.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007361">
        <property type="entry name" value="DUF427"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038694">
        <property type="entry name" value="DUF427_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04248">
        <property type="entry name" value="NTP_transf_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NTP_transf_9" evidence="1">
        <location>
            <begin position="16"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG62005.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="113" mass="12348" checksum="7AA98896ED13D8F9" modified="2017-03-15" version="1">MADHIKIREASGTWVVRAAGAVIGETKNALELSEGDYPPVIYIPRDDMAMAFLEKTETTSTCPYKGNATYYSIIAKSGEIANAAWSYEDPIAGMEQIQGHLAFFKDKAAVEEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LBF8</accession>
    <name>A0A1M5LBF8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="10 12">Malate synthase G</fullName>
            <ecNumber evidence="10 12">2.3.3.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">glcB</name>
        <name evidence="13" type="ORF">SAMN05444003_0203</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10 12">
            <text>acetyl-CoA + glyoxylate + H2O = (S)-malate + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:18181"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15589"/>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="EC" id="2.3.3.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 10">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="10 12">Carbohydrate metabolism; glyoxylate cycle; (S)-malate from isocitrate: step 2/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10 12">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10 12">Belongs to the malate synthase family. GlcB subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.3.3.9" evidence="10 12"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62326.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898584.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0203"/>
    <dbReference type="EnsemblBacteria" id="SHG62326">
        <property type="protein sequence ID" value="SHG62326"/>
        <property type="gene ID" value="SAMN05444003_0203"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00703">
        <property type="reaction ID" value="UER00720"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004474">
        <property type="term" value="F:malate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006097">
        <property type="term" value="P:glyoxylate cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1220.12">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.360">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00641">
        <property type="entry name" value="Malate_synth_G"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044856">
        <property type="entry name" value="Malate_synth_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011076">
        <property type="entry name" value="Malate_synth_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001465">
        <property type="entry name" value="Malate_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006253">
        <property type="entry name" value="Malate_synthG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046363">
        <property type="entry name" value="MS_N_TIM-barrel_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42739">
        <property type="entry name" value="PTHR42739"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01274">
        <property type="entry name" value="Malate_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51645">
        <property type="entry name" value="SSF51645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01345">
        <property type="entry name" value="malate_syn_G"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 10 12" id="KW-0329">Glyoxylate bypass</keyword>
    <keyword evidence="8 10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9 10" id="KW-0558">Oxidation</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 10 12" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 10 12" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="region of interest" description="Acetyl-CoA binding" evidence="10">
        <location>
            <begin position="125"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="region of interest" description="Glyoxylate binding" evidence="10">
        <location>
            <begin position="447"/>
            <end position="450"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="10 11">
        <location>
            <position position="332"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="10 11">
        <location>
            <position position="622"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="118"/>
        </location>
        <ligand>
            <name>acetyl-CoA</name>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="268"/>
        </location>
        <ligand>
            <name>acetyl-CoA</name>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="305"/>
        </location>
        <ligand>
            <name>acetyl-CoA</name>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="332"/>
        </location>
        <ligand>
            <name>glyoxylate</name>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="422"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="450"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="531"/>
        </location>
        <ligand>
            <name>acetyl-CoA</name>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="Cysteine sulfenic acid (-SOH)" evidence="10">
        <location>
            <position position="608"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR601465-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU003572"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHG62326.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="715" mass="78995" checksum="404A8A16D8558346" modified="2017-03-15" version="1">MSQRIEKNGLQVDAELAEFIDEKALPGSGVKPEDFWQGFSSLAHDFAPRNNELLAIRQTIQGQIDDWHIVREGQALDGADYKAFLREIGYLVDEGLEFEIETANVDPEIALVPGPQLVVPITNARFALNAANARWGSLYDAFYGTDAMGSLPPAGGYDRGHGARVVARSRVFLDQAFPIENTSHADARRYYVDKGALLIDDEPLKDPSQFVGYTGHPKGPDSILLRNNGLHVQLVFDRAHPIGSRDQALLADVRLESAVSAIMDCEDSVACVDAEDKVLAYSNWLGLMQGNLESTFQKGGQSMTRRLNDDISYTAADGSDATMKGRALLWVRNVGHLMTNPAILLKDGSEVYEGLMDAMITTLIAIHDLKRDSGNSVHGSVYIVKPKMHGPEEVAFTNEIFAHVEDTLGLPRDTVKVGIMDEERRTTVNLKECIRAAKSRVAFINTGFLDRTGDEIHTSMEAGPFSRKDFIKRKQWIGAYENQNVDIGLECGFSGKAQIGKGMWAMPDKMAAMIEQKIEHPKSGANCAWVPSPTAATLHALHYHAVDVMAVQAKLKAGGRRAYVQSILDIPLAAYRAWTPAQIQREIENNAQGILGYVVRWIDQGVGCSKVPDINDVGLMEDRATCRISSQALANWLHHDVVTQDQVMDTMRKMAEVVDGQNADDPKYRPMAPDFSGVAFQAACDLVFKGREQPSGYTEPVLHRRRLELKAQRNH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LD70</accession>
    <name>A0A1M5LD70_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0226</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62926.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898631.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0226"/>
    <dbReference type="EnsemblBacteria" id="SHG62926">
        <property type="protein sequence ID" value="SHG62926"/>
        <property type="gene ID" value="SAMN05444003_0226"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018653">
        <property type="entry name" value="ScfR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09856">
        <property type="entry name" value="ScfRs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="13"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG62926.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="429" mass="46606" checksum="0C89210BEBF9303B" modified="2017-03-15" version="1">MSVASEAKTGSRIRERRIDLGLRQADLAQSVGISASYLNLIEHNRRRIAGRLLGDIARSLDVEAALLMDGADREVLEQMQAAAVHAKSKAEIDRAEDLASRFPGWAELICEQTRRITNLEAKVQELSDRMSHDPALAASLHSVISSVTSIRSTASILTSDEKLDADWQNRFHKNIHDDAVRLAGNSESLIGYLEAPQETLIGNLPAQLVEEWVEGNYELIRGMETSSRAVDDVVGEAELDGAASLLLTQYLDEAMSDAAVMPMSEFAREAKKRDYHPGELAEVFETNLSAVFRRLSVLGPESGHPPMGLTVCDASGAILYQKIAPEFGLSRAGNACPQWPIFEALGQPGRPVEREVVLPTAPKTRFMCYALAEQTISVLNEPPIIKATMLAIPNPSEGAKPPLTVGPTCRICAATDCAARRELSVLTSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LKC2</accession>
    <name>A0A1M5LKC2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Peptide chain release factor 2</fullName>
            <shortName evidence="4">RF-2</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">prfB</name>
        <name evidence="6" type="ORF">SAMN05444003_0343</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="PTM">
        <text evidence="4">Methylated by PrmC. Methylation increases the termination efficiency of RF2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the prokaryotic/mitochondrial release factor family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65478.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898792.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0343"/>
    <dbReference type="EnsemblBacteria" id="SHG65478">
        <property type="protein sequence ID" value="SHG65478"/>
        <property type="gene ID" value="SAMN05444003_0343"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016149">
        <property type="term" value="F:translation release factor activity, codon specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00094">
        <property type="entry name" value="Rel_fac_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005139">
        <property type="entry name" value="PCRF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000352">
        <property type="entry name" value="Pep_chain_release_fac_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045853">
        <property type="entry name" value="Pep_chain_release_fac_I_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004374">
        <property type="entry name" value="PrfB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03462">
        <property type="entry name" value="PCRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00472">
        <property type="entry name" value="RF-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00937">
        <property type="entry name" value="PCRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75620">
        <property type="entry name" value="SSF75620"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00020">
        <property type="entry name" value="prfB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00745">
        <property type="entry name" value="RF_PROK_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 4" id="KW-0488">Methylation</keyword>
    <keyword evidence="3 4" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RF_PROK_I" evidence="5">
        <location>
            <begin position="243"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="modified residue" description="N5-methylglutamine" evidence="4">
        <location>
            <position position="250"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010835"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00094"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS00745"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG65478.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="375" mass="41781" checksum="612300F4703869EC" modified="2017-03-15" version="1">MRAEIENSVEAIQKSLDLLAQRMDYETAPHRLEEFNARVEDPNLWDNPEGAQKLMRERQLLVDAMEGYEKIKTELQDNIDLIELGEMEDDFEVVSEAEEAIKALESMAADKELEALLDGEADGNDTFLEINSGAGGTESCDWASMLARMYIRWAEKKGYKVELQSETAGEEAGIKSAAYKISGHNAYGWLKSESGVHRLVRISPFDSAAKRHTSFSSIWVYPVVDDNIEIEVNPADIRIDTYRSSGAGGQHVNTTDSAVRITHEPTGIVVTSSEKSQHQNRDIAMKALKSRLYQMELDKRNAAINEAHENKGDAGWGNQIRSYVLQPYQMVKDLRTNHETSDTKGVLDGDLDAFMAATLAMDVSGKSRADAQAED</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LLK6</accession>
    <name>A0A1M5LLK6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">RNA polymerase-binding transcription factor DksA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">dksA</name>
        <name evidence="8" type="ORF">SAMN05444003_0367</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Interacts directly with the RNA polymerase.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the DksA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66022.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898833.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0367"/>
    <dbReference type="EnsemblBacteria" id="SHG66022">
        <property type="protein sequence ID" value="SHG66022"/>
        <property type="gene ID" value="SAMN05444003_0367"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00926">
        <property type="entry name" value="DksA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012784">
        <property type="entry name" value="DksA_RNA_pol-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037187">
        <property type="entry name" value="DnaK_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000962">
        <property type="entry name" value="Znf_DskA_TraR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020458">
        <property type="entry name" value="Znf_DskA_TraR_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01258">
        <property type="entry name" value="zf-dskA_traR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109635">
        <property type="entry name" value="SSF109635"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02420">
        <property type="entry name" value="dksA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01102">
        <property type="entry name" value="ZF_DKSA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51128">
        <property type="entry name" value="ZF_DKSA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0862">Zinc</keyword>
    <keyword evidence="3 5" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="DksA C4-type" evidence="7">
        <location>
            <begin position="59"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="dksA C4-type" evidence="6">
        <location>
            <begin position="102"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00510"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG66022.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="140" mass="16512" checksum="40D1D3123BCB5F23" modified="2017-03-15" version="1">MKAEVFLDEDYRPAEDEPFMNDRQIEYFRRKLINWKNDILDNSSDTVAGMKDQTRNIPDVADRASEETDRALELRTRDRERKLVAKIDAALRRIDEGEYGYCSITGEPISLKRLDARPIATMSLEAQERHERREKVHRDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LLX0</accession>
    <name>A0A1M5LLX0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Molybdopterin molybdenumtransferase</fullName>
            <ecNumber evidence="7">2.10.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_0373</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 7">Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>adenylyl-molybdopterin + H(+) + molybdate = AMP + H2O + Mo-molybdopterin</text>
            <dbReference type="Rhea" id="RHEA:35047"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:36264"/>
            <dbReference type="ChEBI" id="CHEBI:62727"/>
            <dbReference type="ChEBI" id="CHEBI:71302"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.10.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3 7">Cofactor biosynthesis; molybdopterin biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 7">Belongs to the MoeA family.</text>
    </comment>
    <dbReference type="EC" id="2.10.1.1" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66142.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898840.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0373"/>
    <dbReference type="EnsemblBacteria" id="SHG66142">
        <property type="protein sequence ID" value="SHG66142"/>
        <property type="gene ID" value="SAMN05444003_0373"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00344"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061599">
        <property type="term" value="F:molybdopterin molybdotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032324">
        <property type="term" value="P:molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00887">
        <property type="entry name" value="MoeA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.340.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.980.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036425">
        <property type="entry name" value="MoaB/Mog-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001453">
        <property type="entry name" value="MoaB/Mog_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038987">
        <property type="entry name" value="MoeA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005111">
        <property type="entry name" value="MoeA_C_domain_IV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036688">
        <property type="entry name" value="MoeA_C_domain_IV_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005110">
        <property type="entry name" value="MoeA_linker/N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036135">
        <property type="entry name" value="MoeA_linker/N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10192">
        <property type="entry name" value="PTHR10192"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00994">
        <property type="entry name" value="MoCF_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03454">
        <property type="entry name" value="MoeA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03453">
        <property type="entry name" value="MoeA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00852">
        <property type="entry name" value="MoCF_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53218">
        <property type="entry name" value="SSF53218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63867">
        <property type="entry name" value="SSF63867"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63882">
        <property type="entry name" value="SSF63882"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00177">
        <property type="entry name" value="molyb_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 7" id="KW-0500">Molybdenum</keyword>
    <keyword evidence="6 7" id="KW-0501">Molybdenum cofactor biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="MoCF_biosynth" evidence="8">
        <location>
            <begin position="173"/>
            <end position="310"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002901"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005046"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU365090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG66142.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="390" mass="40568" checksum="799156343722CFA2" modified="2017-03-15" version="1">MISVEEALSALFALASPLDTEVVPLSEANGRVLAAPLTAKRNQPPFAASAMDGYAIFGDAAAPGDSFEVIGEAAAGHGFNGTLSEGQACRIFTGAPLPAGAGRVIIQEDVERDNARIILAEKLDPNLYIRPAGADFKAGDTFSAPRALRPSDIALLASMNHASVPVTRKPVVAIIATGDELVQPGETPNQDQIIASNSYGLATLVNANGGHARILPIAKDNLPSLKLAFDLALDADLIVTIGGASVGDHDLVAEAAANLGMARSFYKIAMRPGKPLMAGRLGRSMMIGLPGNPVSAMVCGHIFVLPVLRKMLGLGAAAAPRQNAIVAKDIPVNGPREHYMRGRIENGQVTTFERQDSALLTVLSDANCLCVRPPKAPLTAAGETVEVVLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LMQ6</accession>
    <name>A0A1M5LMQ6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 11">Anthranilate synthase component 1</fullName>
            <ecNumber evidence="5 11">4.1.3.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">trpE</name>
        <name evidence="14" type="ORF">SAMN05444003_0381</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>chorismate + L-glutamine = anthranilate + H(+) + L-glutamate + pyruvate</text>
            <dbReference type="Rhea" id="RHEA:21732"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16567"/>
            <dbReference type="ChEBI" id="CHEBI:29748"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="EC" id="4.1.3.27"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2 11">Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 1/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4 11">Heterotetramer consisting of two non-identical subunits: a beta subunit (TrpG) and a large alpha subunit (TrpE).</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 11">Belongs to the anthranilate synthase component I family.</text>
    </comment>
    <dbReference type="EC" id="4.1.3.27" evidence="5 11"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66328.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898855.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0381"/>
    <dbReference type="EnsemblBacteria" id="SHG66328">
        <property type="protein sequence ID" value="SHG66328"/>
        <property type="gene ID" value="SAMN05444003_0381"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00035">
        <property type="reaction ID" value="UER00040"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004049">
        <property type="term" value="F:anthranilate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000162">
        <property type="term" value="P:tryptophan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005801">
        <property type="entry name" value="ADC_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019999">
        <property type="entry name" value="Anth_synth_I-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006805">
        <property type="entry name" value="Anth_synth_I_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005256">
        <property type="entry name" value="Anth_synth_I_PabB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015890">
        <property type="entry name" value="Chorismate_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11236">
        <property type="entry name" value="PTHR11236"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04715">
        <property type="entry name" value="Anth_synt_I_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00425">
        <property type="entry name" value="Chorismate_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00095">
        <property type="entry name" value="ANTSNTHASEI"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56322">
        <property type="entry name" value="SSF56322"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00564">
        <property type="entry name" value="trpE_most"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 11" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9 11" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="10 11" id="KW-0456">Lyase</keyword>
    <keyword evidence="11" id="KW-0460">Magnesium</keyword>
    <keyword evidence="11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 11" id="KW-0822">Tryptophan biosynthesis</keyword>
    <feature type="domain" description="Anth_synt_I_N" evidence="13">
        <location>
            <begin position="29"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="domain" description="Chorismate_bind" evidence="12">
        <location>
            <begin position="230"/>
            <end position="482"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000329"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004873"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009562"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011575"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00020653"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022822"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU364045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF00425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF04715"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="SHG66328.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="502" mass="54403" checksum="945AD72CBF912979" modified="2017-03-15" version="1">MALHPSYEDFAKAYEAGENQVVYTRLAADLDTPVSLILKLSDAGKDSFVLESVTGGEVRGRYSIVGMNPDVIWKCRGTESQINRDARFDPDAFTPCDDDPLTALRALIAESRIDLPEGLPAASAGLFGYLGYDTIRLIEHLPDINPDPLGLPDAVMMRPAVVAVLDGVKGDVILVAPAWANSGLGARAAYAQAAERVMDAQRALERAVPAQRDISNPAPVAEPTSNFTHKGYLDAVEKAKEYIRAGDIFQVVPSQRWTQDFREPPFALYRSLRRTNPSPFMFYFNFGGFQVVGASPEILVRVFGNEVTIRPIAGTRPRGATPAEDDANEADLLADKKEMAEHLMLLDLGRNDTGKVSKVGTVKPTEQFIIERYSHVMHIVSNVTGELAEDQDALSAFFAGMPAGTVSGAPKVRAMEIIDELEPEKRGVYGGGCGYFSVNGDMDMCIALRTAVVQDQKLYIQAGGGVVYDSDPQAEYMETVHKSNAIRKAAADAAMFSGDGNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LNL0</accession>
    <name>A0A1M5LNL0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Tyrosine--tRNA ligase</fullName>
            <ecNumber evidence="7">6.1.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Tyrosyl-tRNA synthetase</fullName>
            <shortName evidence="7">TyrRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">tyrS</name>
        <name evidence="9" type="ORF">SAMN05444003_0399</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>ATP + L-tyrosine + tRNA(Tyr) = AMP + diphosphate + H(+) + L-tyrosyl-tRNA(Tyr)</text>
            <dbReference type="Rhea" id="RHEA:10220"/>
            <dbReference type="Rhea" id="RHEA-COMP:9706"/>
            <dbReference type="Rhea" id="RHEA-COMP:9707"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58315"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78536"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.1"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.1" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66732.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898878.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0399"/>
    <dbReference type="EnsemblBacteria" id="SHG66732">
        <property type="protein sequence ID" value="SHG66732"/>
        <property type="gene ID" value="SAMN05444003_0399"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004831">
        <property type="term" value="F:tyrosine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006437">
        <property type="term" value="P:tyrosyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00165">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00805">
        <property type="entry name" value="TyrRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02006">
        <property type="entry name" value="Tyr_tRNA_synth_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002305">
        <property type="entry name" value="aa-tRNA-synth_Ic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002942">
        <property type="entry name" value="S4_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036986">
        <property type="entry name" value="S4_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002307">
        <property type="entry name" value="Tyr-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024088">
        <property type="entry name" value="Tyr-tRNA-ligase_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024107">
        <property type="entry name" value="Tyr-tRNA-ligase_bac_1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11766">
        <property type="entry name" value="PTHR11766"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00579">
        <property type="entry name" value="tRNA-synt_1b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01040">
        <property type="entry name" value="TRNASYNTHTYR"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00234">
        <property type="entry name" value="tyrS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7 8" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="4 7 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 7 8" id="KW-0436">Ligase</keyword>
    <keyword evidence="3 7 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 7 8" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="short sequence motif" description="'HIGH' region" evidence="7">
        <location>
            <begin position="45"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="7">
        <location>
            <begin position="237"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="40"/>
        </location>
        <ligand>
            <name>L-tyrosine</name>
            <dbReference type="ChEBI" id="CHEBI:58315"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="177"/>
        </location>
        <ligand>
            <name>L-tyrosine</name>
            <dbReference type="ChEBI" id="CHEBI:58315"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="181"/>
        </location>
        <ligand>
            <name>L-tyrosine</name>
            <dbReference type="ChEBI" id="CHEBI:58315"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="240"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU363036"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG66732.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="416" mass="45724" checksum="762AEB237A59C2F3" modified="2017-03-15" version="1">MTYHPKSEFISVMMERGFLADCTDYQGLDDALSRGVVPAYIGYDATAKSLHVGHLMNIMVLRWFQKCGGKPITLMGGGTTKVGDPSFRSDERPLLDEAAIDANIEGMKQVFAKYLTYGEGATDALMLNNAEWLDDLNYLSFLRDIGRHFSVNRMLSFESVKSRLDREQSLSFLEFNYMILQAYDFLELNRRYGCLLQMGGSDQWGNIVNGIDLTRRVLDQEIYGLTTPLLTTSDGRKMGKSQGGAVWLNGDMLSPYEFWQFWRNTTDADTGKFLKIFTELPVEDCDRLGALEGSEINQAKIILANEVTSLLHGADAAKAAEATAREVFEKGGVGDDLPTLTLSAEDLGDGVSIVQLIVKSGLAGSGKEAKRLIAENGAKLNDEPLTNAGLMVDAEMLASPIKLSAGKKRHSLVQLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LNW2</accession>
    <name>A0A1M5LNW2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">2-Methylisocitrate lyase, PEP mutase family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0403</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66832.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898888.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0403"/>
    <dbReference type="EnsemblBacteria" id="SHG66832">
        <property type="protein sequence ID" value="SHG66832"/>
        <property type="gene ID" value="SAMN05444003_0403"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00377">
        <property type="entry name" value="ICL_PEPM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039556">
        <property type="entry name" value="ICL/PEPM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_Kinase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040442">
        <property type="entry name" value="Pyrv_Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="SSF51621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0456">Lyase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG66832.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="272" mass="28741" checksum="89FFD29A1E87C1C1" modified="2017-03-15" version="1">MTAIGETFRSLHVPGDPLVMINVWDRGTAKMMAALGAKALATSSAAHAYLMGKPDGGDVSRDDALAHAQEIVSATALPVQGDFENGFGDDPDTCAETVRLSAEIGLAGICIEDTMFPSGDAYAFDLTVERIKAAVSAARALPQDFVLTARADGVLTGRYDVDEAFRRLQAFEKVGADCLYAPLLPDMDAVRRVTSTLSKPVNVLAVGRMGKETRATLGDAGVARISIGSALARTTQRVMHDLGQSMIEDGDFTGLKQTISSDIVDKMLTGQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LST7</accession>
    <name>A0A1M5LST7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0457</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68065.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898966.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0457"/>
    <dbReference type="EnsemblBacteria" id="SHG68065">
        <property type="protein sequence ID" value="SHG68065"/>
        <property type="gene ID" value="SAMN05444003_0457"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="34"/>
            <end position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG68065.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="154" mass="16569" checksum="7D1F34E8ABF9901C" modified="2017-03-15" version="1">MSEINALESRLTAALDRIRAGVDGLGAGAVGDASSALEAQLSEERTANAQLEERVKALKERQDNKIAELEARVTSYRKQMSDLDAELQKLRTSNADLRDMNAKLRAAAADGMSQPELLNRALMAEVDALKTQRSADATEVDAILAELKSLVGSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LT78</accession>
    <name>A0A1M5LT78_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0459</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68110.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG68110">
        <property type="protein sequence ID" value="SHG68110"/>
        <property type="gene ID" value="SAMN05444003_0459"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG68110.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="80" mass="9203" checksum="5FAA18E679282151" modified="2017-03-15" version="1">MIFAEFCEESAAIRLEYAIKAYSNEKLTRLCGHEIVLDFDCDKGLVTIKDMFCEIDDFEMNWSEFLGHVRAQRGLAIGFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LVT9</accession>
    <name>A0A1M5LVT9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0505</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69167.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899028.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0505"/>
    <dbReference type="EnsemblBacteria" id="SHG69167">
        <property type="protein sequence ID" value="SHG69167"/>
        <property type="gene ID" value="SAMN05444003_0505"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="123"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="168"/>
            <end position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG69167.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="416" mass="46727" checksum="DA62E982D68F5382" modified="2017-03-15" version="1">MDNGTETSVKRRQVFYIPGYDPFPPRRYRELYRTESAAQAKISGYEIGVAGKPKDDGYGWRAAAKIDGSTTVADIDVLIWSDIVRDSMSNSIPATYWQMLRTSWIYITSGTLRRLMWMRKGPVIAALYPVGMLILQLLVGLLLGWFVASVVEGIVASVIGLFGWSVRFPWFVSWPIVLAICWLVLRFCQSKDRKTYAYYLMYDYAFSAGLKGDTRPELKERMAEFEARISEALRSDVDEVLVVGHSSGAHLAISILAAVLRSSPPRKNGPKLGLLTLGQVVPMVSFLPKATALRADLNYIATSEAITWIDVSAPGDGCCFALCDPVAVSGVADSDQKWPIVISAAFTQTLAPERWEELKRKYFRLHFQYLCSFDRPKDYDYFQITCGPRTLADRYRGRASSKSRIDVVASKYTTME</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LXG9</accession>
    <name>A0A1M5LXG9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0501</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69083.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899024.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG69083">
        <property type="protein sequence ID" value="SHG69083"/>
        <property type="gene ID" value="SAMN05444003_0501"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG69083.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="96" mass="10180" checksum="158E489667E3F7F5" modified="2017-03-15" version="1">MPAVPSTKILGLVFLGLAGCAVQNTDGTVSVPSGDVPAEVLEAAAPNQDLSFVELRESDNCYWYRYRGPVETTMLPLRTRSGRPICAQVAEAAPAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LYJ1</accession>
    <name>A0A1M5LYJ1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative hydrolases of HD superfamily</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0543</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69990.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899084.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0543"/>
    <dbReference type="EnsemblBacteria" id="SHG69990">
        <property type="protein sequence ID" value="SHG69990"/>
        <property type="gene ID" value="SAMN05444003_0543"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002953">
        <property type="term" value="F:5'-deoxynucleotidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006674">
        <property type="entry name" value="HD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039356">
        <property type="entry name" value="YfbR/HDDC2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11845">
        <property type="entry name" value="PTHR11845"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13023">
        <property type="entry name" value="HD_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HD" evidence="1">
        <location>
            <begin position="15"/>
            <end position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG69990.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="193" mass="21896" checksum="DDDEFB111B905995" modified="2017-03-15" version="1">MTSRIEQQLAFLNEADKLKSVTRGTTLNDGSRKENSAEHSWHISLYVLTLAEHANRPINVDRVIKMLLLHDIVEIDAGDNPIHGDHDPVEMEKVEKAAADRIFGLLPKDQRDGFRALWDEFEAAETDDAIFAKSIDRVQPVIANLESGGGSWHEYDVDQEKLERRVAVKVKRGAPAIWDVLKNRIDAWFETNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LZL2</accession>
    <name>A0A1M5LZL2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Iron-regulated ABC transporter membrane component SufB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0549</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0051 (ycf24) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70119.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899090.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0549"/>
    <dbReference type="EnsemblBacteria" id="SHG70119">
        <property type="protein sequence ID" value="SHG70119"/>
        <property type="gene ID" value="SAMN05444003_0549"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016226">
        <property type="term" value="P:iron-sulfur cluster assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010231">
        <property type="entry name" value="SUF_FeS_clus_asmbl_SufB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000825">
        <property type="entry name" value="SUF_FeS_clus_asmbl_SufBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037284">
        <property type="entry name" value="SUF_FeS_clus_asmbl_SufBD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045595">
        <property type="entry name" value="SufBD_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01458">
        <property type="entry name" value="SUFBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19295">
        <property type="entry name" value="SufBD_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101960">
        <property type="entry name" value="SSF101960"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01980">
        <property type="entry name" value="sufB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SufBD_N" evidence="2">
        <location>
            <begin position="171"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF19295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG70119.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="507" mass="56384" checksum="FBF290C6A053872A" modified="2017-03-15" version="1">MAALDQMDVKDGVDQETVDAVAELSGTYKYGWETEIEMEYAPKGVNPDIVRLISSKNDEPEWMTEWRLSAFERWEKIEEPTWAMVDYPDIDFQDIYYYARPKSMEEKPKSLDEVDPKLLATYEKLGIPLKEQMILAGVEGAEDAPSEGRKVAVDAVFDSVSVGTTFQEELKKAGVIFCSISEAIKEHPELVKKYLGTVVPPSDNFYATLNSAVFSDGSFVYVPPGVRCPMELSTYFRINAENTGQFERTLIIADKGSYVSYLEGCTAPQRDTAQLHAAVVEIIIEEDAEVKYSTVQNWFPGDENGNGGIYNFVTKRADCRGARSKVMWTQVETGSAVTWKYPSCILRGDDSQGEFYSIAIANNYQQADTGTKMVHLGKNTKSRIVSKGISAGKAQNTYRGLVSMHLKAKDSRNYTQCDSLLIGDKCGAHTVPYIEVKNNSSRVEHEATTSKVDDDQLFYCRSRGMDEEEAVALVVNGFCKEVLQALPMEFAMEAQALVAISLEGSVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M110</accession>
    <name>A0A1M5M110_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">1-deoxy-D-xylulose 5-phosphate reductoisomerase</fullName>
            <shortName evidence="7">DXP reductoisomerase</shortName>
            <ecNumber evidence="7">1.1.1.267</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">1-deoxyxylulose-5-phosphate reductoisomerase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">2-C-methyl-D-erythritol 4-phosphate synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">dxr</name>
        <name evidence="11" type="ORF">SAMN05444003_0584</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>2-C-methyl-D-erythritol 4-phosphate + NADP(+) = 1-deoxy-D-xylulose 5-phosphate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:13717"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:57792"/>
            <dbReference type="ChEBI" id="CHEBI:58262"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.1.1.267"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="1 7">Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-phosphate: step 1/6.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the DXR family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.267" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70860.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899137.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0584"/>
    <dbReference type="EnsemblBacteria" id="SHG70860">
        <property type="protein sequence ID" value="SHG70860"/>
        <property type="gene ID" value="SAMN05444003_0584"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00056">
        <property type="reaction ID" value="UER00092"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030604">
        <property type="term" value="F:1-deoxy-D-xylulose-5-phosphate reductoisomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070402">
        <property type="term" value="F:NADPH binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019288">
        <property type="term" value="P:isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016114">
        <property type="term" value="P:terpenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00183">
        <property type="entry name" value="DXP_reductoisom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003821">
        <property type="entry name" value="DXP_reductoisomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013644">
        <property type="entry name" value="DXP_reductoisomerase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013512">
        <property type="entry name" value="DXP_reductoisomerase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026877">
        <property type="entry name" value="DXPR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036169">
        <property type="entry name" value="DXPR_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30525">
        <property type="entry name" value="PTHR30525"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08436">
        <property type="entry name" value="DXP_redisom_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02670">
        <property type="entry name" value="DXP_reductoisom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13288">
        <property type="entry name" value="DXPR_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006205">
        <property type="entry name" value="Dxp_reductismrs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69055">
        <property type="entry name" value="SSF69055"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00243">
        <property type="entry name" value="Dxr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6 7" id="KW-0414">Isoprene biosynthesis</keyword>
    <keyword evidence="3 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 7" id="KW-0521">NADP</keyword>
    <keyword evidence="5 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DXP_reductoisom" evidence="8">
        <location>
            <begin position="4"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="domain" description="DXP_redisom_C" evidence="9">
        <location>
            <begin position="143"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="domain" description="DXPR_C" evidence="10">
        <location>
            <begin position="259"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="7"/>
            <end position="36"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="122"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="147"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="149"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="173"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="196"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005094"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00183"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF08436"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF13288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG70860.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="387" mass="40967" checksum="43D4AB49EB7F65D8" modified="2017-03-15" version="1">MKTVSILGATGSIGQNTIDLIKRRPDEFDVVAVTGGHNLEQLAASAVELGAQVAVTCYDEKFADLRELLSGKNVEVKAGEEAVVEAASISVDWTMSAIVGAAGLRPGMASLSNGKTLALANKESLVSAGQAYMGHAKASGATVLPVDSEHSAVFQALIGEDMAALERVIITASGGAFRDWPIEKLKTATLAEASSHPNWDMGQRITIDSASMFNKAMELIETKEFFGVSSEQIETVIHPESLIHALVGFNDGALMAHVGPPDMRHAIGFALNWPDRIELPVERLNLTDIGQLTFRAPDDARYPALAIARDVMEIGGLAGAVFTAAKERALDAFIAGQIGFMDMAPVVSKTLDKMSAQGGLQNAKITLDSILDADKTARIYAGEFATN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M1D1</accession>
    <name>A0A1M5M1D1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">GMP synthase [glutamine-hydrolyzing]</fullName>
            <ecNumber evidence="9">6.3.5.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">GMP synthetase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">Glutamine amidotransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">guaA</name>
        <name evidence="12" type="ORF">SAMN05444003_0597</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 9">Catalyzes the synthesis of GMP from XMP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>ATP + H2O + L-glutamine + XMP = AMP + diphosphate + GMP + 2 H(+) + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:11680"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57464"/>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.3.5.2"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 9">Purine metabolism; GMP biosynthesis; GMP from XMP (L-Gln route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Homodimer.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.2" evidence="9"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG71164.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899151.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0597"/>
    <dbReference type="EnsemblBacteria" id="SHG71164">
        <property type="protein sequence ID" value="SHG71164"/>
        <property type="gene ID" value="SAMN05444003_0597"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00189">
        <property type="reaction ID" value="UER00296"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003922">
        <property type="term" value="F:GMP synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016462">
        <property type="term" value="F:pyrophosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01742">
        <property type="entry name" value="GATase1_GMP_Synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01997">
        <property type="entry name" value="GMP_synthase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00344">
        <property type="entry name" value="GMP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017926">
        <property type="entry name" value="GATASE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001674">
        <property type="entry name" value="GMP_synth_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004739">
        <property type="entry name" value="GMP_synth_GATase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022955">
        <property type="entry name" value="GMP_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025777">
        <property type="entry name" value="GMPS_ATP_PPase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00117">
        <property type="entry name" value="GATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00958">
        <property type="entry name" value="GMP_synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00884">
        <property type="entry name" value="guaA_Cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00888">
        <property type="entry name" value="guaA_Nterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51553">
        <property type="entry name" value="GMPS_ATP_PPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 9 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8 9" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="5 9 10" id="KW-0332">GMP biosynthesis</keyword>
    <keyword evidence="3 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 9 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 9 10" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GMPS ATP-PPase" evidence="11">
        <location>
            <begin position="202"/>
            <end position="394"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="9">
        <location>
            <position position="86"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="176"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="178"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="229"/>
            <end position="235"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005153"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00344"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00886"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG71164.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="519" mass="57312" checksum="3CE003231F7E8B80" modified="2017-03-15" version="1">MENQTHERLLIIDFGSQVTQLIARRLRELSVYCEIHPYQSVDDAFLADFAPKAVILSGGPDSVTREGSPRAPQSLFDLGMPVLGICYGQQTMMTQLGGKVVSGEGTAEFGRAYVTPEGSLDLLEGWFEDDKEQVWMSHGDHVSEIAPGFEVFGTSPNAPFAITADVSRQFYAVQFHPEVHHTPNGSKLYENFIKLAGFTGDWTMGAYREQAIEAIRQQVGDKKVICALSGGVDSSVAAALLHEAIGSQLTCVFVDHGLLRLNEAEEVLSMFRDHMNLQVIHAEEQELFLGELEGQSDPETKRKIIGKLFIDVFQKYANEIEGAEFLAQGTLYPDVIESVSFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDEVRALGVELGLPASFIGRHPFPGPGLAIRCPGEITREKLEILRKADAVYIDQIRKHGLYDEIWQAFVAILPVRTVGVMGDGRTYDYACALRAVTSVDGMTADYYPFSHEFLGETATRIINEVQGINRVTYDITSKPPGTIEWE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M3I7</accession>
    <name>A0A1M5M3I7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Amino acid/amide ABC transporter membrane protein 1, HAAT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0621</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG71818.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0621"/>
    <dbReference type="EnsemblBacteria" id="SHG71818">
        <property type="protein sequence ID" value="SHG71818"/>
        <property type="gene ID" value="SAMN05444003_0621"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="52"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="78"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="112"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="169"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="216"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="306"/>
            <end position="326"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG71818.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="337" mass="36409" checksum="AC961A2FA0FB3FA3" modified="2017-03-15" version="1">MTDFLNALVALTNFVIVPGMAYGAQLALGALGVTLIYGILRFSNFAHGDTMAFGAMATIFITWTFQAWGISFGPLPTAILALPFAIMITALVLLGTDRVVYRFYRRQKSDPVILVIVSMGVMFIMNGIVRFMIGVGDIRFSDGERFIISARDFKAATGLKEGLAIKTTQGITIVTAIIVVAILFWFLNKTRTGKSMRAFSDNEDLALLSGINPERVVMVTWIIVGALATVAGTLYGLDKSFKPFVYLQLLLPIFAAAIVGGLGNPLGAIVGGFIIAFAEVTITYPLKKVLGYLLPESLEPDGLVQLLSTDYKFAVSFVILLIVLLVKPTGIFKGQSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M4P6</accession>
    <name>A0A1M5M4P6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 8">Phosphate transport system permease protein PstA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_0636</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 8">Cell inner membrane</location>
            <topology evidence="2 8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72206.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899205.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0636"/>
    <dbReference type="EnsemblBacteria" id="SHG72206">
        <property type="protein sequence ID" value="SHG72206"/>
        <property type="gene ID" value="SAMN05444003_0636"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005315">
        <property type="term" value="F:inorganic phosphate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035435">
        <property type="term" value="P:phosphate ion transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024573">
        <property type="entry name" value="DUF3333"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005672">
        <property type="entry name" value="Phosphate_PstA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11812">
        <property type="entry name" value="DUF3333"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00974">
        <property type="entry name" value="3a0107s02c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="36"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="224"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="269"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="295"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="345"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="418"/>
            <end position="439"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="224"/>
            <end position="436"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00016864"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU363043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG72206.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="447" mass="48580" checksum="2C8020B988802D6C" modified="2017-03-15" version="1">MTDTTVTPVSAKPAKSILEIDARTKKRNAAEKRFKAYGIAAICVGLFFLVALLWAIIQNGTPAFTQTYVTLDVELLEEKLDKTGERDIEAIKKVSTFGYKPLIQNALVDATEGMETEIEDKNLAKLLSDSAAAQIRDYVIANPDQIGETVEFTVLASSRVDGYLKGRVTREDLARDKNLSPDHLDLIDQMVEDGSVERIFNWAFITGADASEKRPESAGIGVSMIGSFFMMLVVLILALPIGVAASIYLEEFAPQNRFTDLIEVNISNLAAVPSIVFGILGLAVFIQFAHLPQSAPIVGGLTLTLMTLPTIVISTRASLKAVPPSIRDAALGVGASKMQTVFHHVLPLAMPGILTGTIIGLAQALGETAPLLLIGMVGFIASNYPEGVASGFLDPNSAMPAQIYEWAKRADPAYYERAWGGIIVLLVFLLTMNIIAIILRRRFERRW</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M6T9</accession>
    <name>A0A1M5M6T9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Transcription-repair-coupling factor</fullName>
            <shortName evidence="8">TRCF</shortName>
            <ecNumber evidence="8">3.6.4.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">mfd</name>
        <name evidence="11" type="ORF">SAMN05444003_0669</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">In the C-terminal section; belongs to the helicase family. RecG subfamily.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">In the N-terminal section; belongs to the UvrB family.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.-" evidence="8"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73001.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899267.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0669"/>
    <dbReference type="EnsemblBacteria" id="SHG73001">
        <property type="protein sequence ID" value="SHG73001"/>
        <property type="gene ID" value="SAMN05444003_0669"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003684">
        <property type="term" value="F:damaged DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000716">
        <property type="term" value="P:transcription-coupled nucleotide-excision repair, DNA damage recognition"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00969">
        <property type="entry name" value="TRCF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036101">
        <property type="entry name" value="CarD-like/TRCF_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003711">
        <property type="entry name" value="CarD-like/TRCF_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004576">
        <property type="entry name" value="Mfd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037235">
        <property type="entry name" value="TRCF-like_C_D7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005118">
        <property type="entry name" value="TRCF_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041471">
        <property type="entry name" value="UvrB_inter"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02559">
        <property type="entry name" value="CarD_CdnL_TRCF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03461">
        <property type="entry name" value="TRCF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17757">
        <property type="entry name" value="UvrB_inter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01058">
        <property type="entry name" value="CarD_TRCF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00982">
        <property type="entry name" value="TRCF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141259">
        <property type="entry name" value="SSF141259"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143517">
        <property type="entry name" value="SSF143517"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00580">
        <property type="entry name" value="mfd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 8" id="KW-0227">DNA damage</keyword>
    <keyword evidence="7 8" id="KW-0234">DNA repair</keyword>
    <keyword evidence="6 8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-0347">Helicase</keyword>
    <keyword evidence="3 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="9">
        <location>
            <begin position="611"/>
            <end position="772"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="10">
        <location>
            <begin position="793"/>
            <end position="947"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00969"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG73001.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="1150" mass="126662" checksum="2B7407C0362B831F" modified="2017-03-15" version="1">MSATQHITISGAPEGFDAQVVLQEIAKSDAPVCYVARDDKRLAAMQAALSFFAPDMPVIVFPAWDCLPYDRVSPNADVSAARMATLAALVHGMPSKFVLLTTVNAATQRVPPRSLLKEAAFTATVGKRIDEDGLKAFLVRMGFTQSPTVMEPGDYAIRGGIIDIFPPGQSGPIRLDLFGDVLDGARRFDPATQRTTEKLNEIELAPVSEVILDDAAITRFRQNYRIEFGAAGTDDPLYEAVSAGRKHAGVEHWLGFFQDDLETLFNFVDGLSIMLDDQVGPSRLARWEAIEDQYGTRMHALEQKSRMDTVYKPAPPTLLYLDDAAWDAAVSNNRVIQLAALPQATGLGVTDAGGRAGRNFAPERQQEQISLFGSLAEHLIEKLADGPVVIASYSEGARERLTGLIEDEGVAAAIPVSDFSRVGKSGLHLAVWALDAGFEAPGLTVISEQDVLGDRLIRQTKRKRRAENFLTEATSLAPGDLVVHVDHGVGRFKGLEVVTALGAAHECLLLEYAEQAKLYLPVENIELLSKYGHDTGLLDRLGGGAWQAKKAKLKERIRQIAERLMRVAAERELRSAPVMEPTDGLWDQFLARFPYAETDDQLQAIEDVLDDMGSGRPMDRLVCGDVGFGKTEVAIRAAFVAALTGVQVAIIAPTTLLARQHYKNFAERFRGFPVNVRPLSRFVSAKEANLTREGMAKGTVDIVVGTHALLAKNIRFKNLGLLIIDEEQHFGVQHKERLKQMRTDVHVLTLTATPIPRTLQLSLSGVRDLSIIGTPPIDRLAIRTYVSEFDTITIREALLREHYRGGQSFLVVPRISDISEMETFLRDQVPEVSFITATGQLAAGDLDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMVVWRADMFGLAQLYQIRGRVGRSKTRAYAYLTTKPRQRLTDTAQKRLRVLSSLDTLGAGFTLASQDLDIRGAGNLLGEEQSGQMKEVGYELYQQMLEEQIAAIKSGAAEGIVDDGQWSPNINLGIPVLIPEDYIPDLDVRLGLYRRLSELTTKVELEGFAAELIDRFGKLPREVNSLMLVVRIKAMCKKAGIAKLDAGPKGATIQFHNDKFASPQGLVEFINDQRGLAKVKDNKIVVRRDWTKEKDKIQGAFNIARDLAQKLAEEKKRANR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MAH6</accession>
    <name>A0A1M5MAH6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Amino acid ABC transporter membrane protein, PAAT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_0700</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the binding-protein-dependent transport system permease family. HisMQ subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73693.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899318.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0700"/>
    <dbReference type="EnsemblBacteria" id="SHG73693">
        <property type="protein sequence ID" value="SHG73693"/>
        <property type="gene ID" value="SAMN05444003_0700"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010065">
        <property type="entry name" value="AA_ABC_transptr_permease_3TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043429">
        <property type="entry name" value="ArtM/GltK/GlnP/TcyL/YhdX-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30614">
        <property type="entry name" value="PTHR30614"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01726">
        <property type="entry name" value="HEQRo_perm_3TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="24"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="68"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="117"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="147"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="240"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="72"/>
            <end position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG73693.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="277" mass="30608" checksum="DCA4888C5AD7AD5D" modified="2017-03-15" version="1">MADQSAAGRTRRQIYEDRLRRRSLIIAGSSTTIVVLAVLFLVPMAPGWEKVQKSFFNWDVFAKTFPGLLEAFMLDVAIFAWCAPLIAILGLLVALARDVRSPALFPLRILGAAYTDIFRGVPVILTVYLIGFGIPGLGLPRPWNSPYIWGSLALILTYSAYVAEIFRSGIESVHQSQRSAAESLGLSESDTIRFVILPQAIRRVIPAQMNMLIALQKDVALLSFIGPVEIFRQAGVYKSLLANFTPYVGAAVIFLAVTIPATRYADYLLAKQNRERS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MDC6</accession>
    <name>A0A1M5MDC6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0770</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75226.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899430.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG75226">
        <property type="protein sequence ID" value="SHG75226"/>
        <property type="gene ID" value="SAMN05444003_0770"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG75226.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="131" mass="14423" checksum="8F9F9BCD66287F8B" modified="2017-03-15" version="1">MADGESTFTVYAKIEGLWQGAYGSGMDIMADAGVDNEDALEAFLAENPQHAADMQQAARDFFVNHNSDGLKEMAQTYLPQMDRYEADRVKELLTDAGYSFSDRPEGGLFVNVNGTPVSWEVAVKQQIISFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MNL0</accession>
    <name>A0A1M5MNL0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 10">Adenylosuccinate lyase</fullName>
            <shortName evidence="10">ASL</shortName>
            <ecNumber evidence="4 10">4.3.2.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9 10">Adenylosuccinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">SAMN05444003_0930</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>(2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinate = 5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide + fumarate</text>
            <dbReference type="Rhea" id="RHEA:23920"/>
            <dbReference type="ChEBI" id="CHEBI:29806"/>
            <dbReference type="ChEBI" id="CHEBI:58443"/>
            <dbReference type="ChEBI" id="CHEBI:58475"/>
            <dbReference type="EC" id="4.3.2.2"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="7">
            <dbReference type="Rhea" id="RHEA:23921"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>N(6)-(1,2-dicarboxyethyl)-AMP = AMP + fumarate</text>
            <dbReference type="Rhea" id="RHEA:16853"/>
            <dbReference type="ChEBI" id="CHEBI:29806"/>
            <dbReference type="ChEBI" id="CHEBI:57567"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="4.3.2.2"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="8">
            <dbReference type="Rhea" id="RHEA:16854"/>
        </physiologicalReaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 10">Purine metabolism; AMP biosynthesis via de novo pathway; AMP from IMP: step 2/2.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 10">Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate: step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 10">Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.</text>
    </comment>
    <dbReference type="EC" id="4.3.2.2" evidence="4 10"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78980.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899658.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0930"/>
    <dbReference type="EnsemblBacteria" id="SHG78980">
        <property type="protein sequence ID" value="SHG78980"/>
        <property type="gene ID" value="SAMN05444003_0930"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00132"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00075">
        <property type="reaction ID" value="UER00336"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070626">
        <property type="term" value="F:(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido) succinate lyase (fumarate-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004018">
        <property type="term" value="F:N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044208">
        <property type="term" value="P:'de novo' AMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.275.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019468">
        <property type="entry name" value="AdenyloSucc_lyase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024083">
        <property type="entry name" value="Fumarase/histidase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020557">
        <property type="entry name" value="Fumarate_lyase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000362">
        <property type="entry name" value="Fumarate_lyase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022761">
        <property type="entry name" value="Fumarate_lyase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008948">
        <property type="entry name" value="L-Aspartase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004769">
        <property type="entry name" value="Pur_lyase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10397">
        <property type="entry name" value="ADSL_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00206">
        <property type="entry name" value="Lyase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00149">
        <property type="entry name" value="FUMRATELYASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00998">
        <property type="entry name" value="ADSL_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48557">
        <property type="entry name" value="SSF48557"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00928">
        <property type="entry name" value="purB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00163">
        <property type="entry name" value="FUMARATE_LYASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 12" id="KW-0456">Lyase</keyword>
    <keyword evidence="6 10" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ADSL_C" evidence="11">
        <location>
            <begin position="352"/>
            <end position="432"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00017058"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00024477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00024487"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00030717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU361172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00998"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG78980.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="433" mass="48579" checksum="0A6F27B00D1363F8" modified="2017-03-15" version="1">MIPRYSRPEMTAIWDPATKFRIWYEIEAHACDAMAKLGVIPQENADAVWKAKDVEFDVARIDEIEAVTKHDVIAFLTHLAEIIGNDEARFVHQGMTSSDVLDTTLNVQLVRAADILIADMDRVLAALKERALEHKDTVRIGRSHGIHAEPTTMGLTFSRFYAEMDRGRTRLINAREEIATGAISGAVGTFANIDPAVEEHVCNEMGLKPEPISTQVIPRDRHAMFFATLGVIASSMENIATEIRHMQRTEVLEAEEFFSKGQKGSSAMPHKRNPVLTENLTGLARLVRMSVVPAMENVTLWHERDISHSSVERAIGPDTTVTLDFALNRLAGVIEKLVIYPENMLANMNKFRGLVMSQRVLLALTQAGVSREDSYKLVQRNAMKVWEQGADFQTELLADDDVRAALSEEEIREKFDLGYHTKHVETIFARVFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MPX7</accession>
    <name>A0A1M5MPX7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">KDO2-lipid IV(A) lauroyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_0937</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79122.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899671.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0937"/>
    <dbReference type="EnsemblBacteria" id="SHG79122">
        <property type="protein sequence ID" value="SHG79122"/>
        <property type="gene ID" value="SAMN05444003_0937"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009247">
        <property type="term" value="P:glycolipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd07984">
        <property type="entry name" value="LPLAT_LABLAT-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004960">
        <property type="entry name" value="LipA_acyltrans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30606">
        <property type="entry name" value="PTHR30606"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03279">
        <property type="entry name" value="Lip_A_acyltrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="2" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG79122.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="303" mass="34049" checksum="807BF14BC39E7346" modified="2017-03-15" version="1">MTKTPPLQGTKADWLADRALRGLIASVMQLPYQSRVPMMGSALRRAIGPLVGYRKRAEENLAFIYPDMSPTRRRQIAEGVCDNFGRTLIENYSHEEFGDWIKDCEATGAGIAALEYARAKKQPVIFVTGHYGNHEAPRQVLTRMGYEIGGLYRPMANPYFNEHYSKTMTSWGGPVFEQGKRGTMGFSKHLKSGGMGTLLFDVNYDRGELLPFLGKPARTAFSAAEIALRFDALVIPYFGKRLDDGLSFSVDLDAPIKHTDPVQMMTDISSSLEKRIEDAPEQWFWIHRRWKNKSGKSAELSGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MRG1</accession>
    <name>A0A1M5MRG1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Membrane fusion protein, multidrug efflux system</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0956</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79469.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899703.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0956"/>
    <dbReference type="EnsemblBacteria" id="SHG79469">
        <property type="protein sequence ID" value="SHG79469"/>
        <property type="gene ID" value="SAMN05444003_0956"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032317">
        <property type="entry name" value="HlyD_D23"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006143">
        <property type="entry name" value="RND_pump_MFP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16576">
        <property type="entry name" value="HlyD_D23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01730">
        <property type="entry name" value="RND_mfp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="6"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="domain" description="HlyD_D23" evidence="4">
        <location>
            <begin position="217"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="131"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF16576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG79469.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="418" mass="43989" checksum="9B2099D5A906E738" modified="2017-03-15" version="1">MKIVPVITAVFVTAALYLLIFERDRLFEFAQESAPSAQEATEAETAEVADTDMDSAEEEVSQVVRVVALASEAQTIENAVVVRGRTEAARQVMVAAETAGLVISEPLRKGAQITVGDTMCQLDPGTRLVSLAEAEARLVEAQGRIPEAEAAVAEADARIAEAEINLNAAVRLSEDGFASETRVISAEAALEAAQAGRQRAVTGLASADAGIQAAEAGVAAAQREIDRLAIKAPFSGLLETDSAELGSLMQPGSPCATIIQLDPIKLVGFVPEDKVTQVELGALAGARLTDDSQVRGTVTFISRSADPVTRTFRVEVEVPNTDLAIRDGQTADILIASAGRTAHLVPQSALTLDDNGALGVRIIDDESKAQFMEVTALRDTTEGIWLGDLPDKVNIITVGQEYVVDGVLVEPTFSEAEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MUF5</accession>
    <name>A0A1M5MUF5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1024</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80835.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899764.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG80835">
        <property type="protein sequence ID" value="SHG80835"/>
        <property type="gene ID" value="SAMN05444003_1024"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG80835.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="102" mass="10799" checksum="1B485B8C4422CCFC" modified="2017-03-15" version="1">MRSWVLFIPFAALVVLSGYLGYQMGKVAPPSEGDVIARWAEKYVAWAGGDAKATDCSATPGRGEVWMIITCVPDAPQQSISYQVNRAGQLVQPGAGQSGPEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MYB3</accession>
    <name>A0A1M5MYB3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Glycine--tRNA ligase beta subunit</fullName>
            <ecNumber evidence="10">6.1.1.14</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Glycyl-tRNA synthetase beta subunit</fullName>
            <shortName evidence="10">GlyRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">glyS</name>
        <name evidence="12" type="ORF">SAMN05444003_1095</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly)</text>
            <dbReference type="Rhea" id="RHEA:16013"/>
            <dbReference type="Rhea" id="RHEA-COMP:9664"/>
            <dbReference type="Rhea" id="RHEA-COMP:9683"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78522"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.14"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="4 10">Tetramer of two alpha and two beta subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 10">Belongs to the class-II aminoacyl-tRNA synthetase family.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.14" evidence="10"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82324.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899826.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1095"/>
    <dbReference type="EnsemblBacteria" id="SHG82324">
        <property type="protein sequence ID" value="SHG82324"/>
        <property type="gene ID" value="SAMN05444003_1095"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004814">
        <property type="term" value="F:arginine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004820">
        <property type="term" value="F:glycine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006420">
        <property type="term" value="P:arginyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006426">
        <property type="term" value="P:glycyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00255">
        <property type="entry name" value="Gly_tRNA_synth_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008909">
        <property type="entry name" value="DALR_anticod-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015944">
        <property type="entry name" value="Gly-tRNA-synth_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006194">
        <property type="entry name" value="Gly-tRNA-synth_heterodimer"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30075">
        <property type="entry name" value="PTHR30075"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05746">
        <property type="entry name" value="DALR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02092">
        <property type="entry name" value="tRNA_synt_2f"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01045">
        <property type="entry name" value="TRNASYNTHGB"/>
    </dbReference>
    <dbReference type="SMART" id="SM00836">
        <property type="entry name" value="DALR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00211">
        <property type="entry name" value="glyS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50861">
        <property type="entry name" value="AA_TRNA_LIGASE_II_GLYAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 10 12" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="7 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 10" id="KW-0436">Ligase</keyword>
    <keyword evidence="6 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8 10" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DALR_1" evidence="11">
        <location>
            <begin position="639"/>
            <end position="751"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00255"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00836"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG82324.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="753" mass="83340" checksum="52FC45DF971EC2DF" modified="2017-03-15" version="1">MPDLLIELFSEEIPARMQKRAAEDLKKLVTDGLVEAGLTYAGAAAFSTPRRLTLSVEDLLAESKPVREERKGPKVGAPDQAIEGFLRGAGVARDDLEVRDDKKGQVYFAVIERPGRLASDVIAEVLDKTIRNFPWPKSMRWGSGTLKWVRPLHSIVCLMTDESGATLVPVDVDGITSGDFTYGHRFMSKGAISVTSFDDYEAKLKRANVVLRADERAEAIWQDASNQAFAQGLEVVEDKGLLAEVAGLVEWPVVLMGKIDEVFLELPPEVLQTSMKEHQKFFSVRNAKTGRIEQFITVANMETADNGATILAGNQKVLSARLADAKFFWENDLRVAKGEKMQPWLDAQANVTFHNKLGSQRDLIERMTALAKELAPAVGADPELAAQAAQVAKADLASEMVYEFPDLQGLMGRYYSEAAGLPAEVAVACEEHYAPLGPSDEVPTAPVSVAVSLAEKLDKLTGFWAIDERPTGSKDPFALRRAALGVIRLILANNVRLNFSDFIEDYAYVFVAFDFDKQEVPPQTGLDLLKQFDALLDNLGSNFDRANLIKEFTKNKIGELSEEARVYYFDKFVETRERLANLLTFFHDRLKVFLRDQGIRHDIIDACIAMPGNDDLTLLVKRARALSETLSTDDGENLIQGFKRANNILTQAEEKDGVEYSYGADIKFAEHDAEKALFKALDEADAVIKPAMEAEDFTTAMTAMAGLRVPIDAFFTDVQVNAESDVLRRNRLNLLSRIRSTCLAVADLTKIEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N0D4</accession>
    <name>A0A1M5N0D4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Signal recognition particle receptor FtsY</fullName>
            <shortName evidence="6">SRP receptor</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">ftsY</name>
        <name evidence="11" type="ORF">SAMN05444003_1107</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Part of the signal recognition particle protein translocation system, which is composed of SRP and FtsY. SRP is a ribonucleoprotein composed of Ffh and a 4.5S RNA molecule.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Peripheral membrane protein</topology>
            <orientation evidence="2">Cytoplasmic side</orientation>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Peripheral membrane protein</topology>
            <orientation evidence="6">Cytoplasmic side</orientation>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the GTP-binding SRP family. FtsY subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82629.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1107"/>
    <dbReference type="EnsemblBacteria" id="SHG82629">
        <property type="protein sequence ID" value="SHG82629"/>
        <property type="gene ID" value="SAMN05444003_1107"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031226">
        <property type="term" value="C:intrinsic component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006614">
        <property type="term" value="P:SRP-dependent cotranslational protein targeting to membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00920">
        <property type="entry name" value="FtsY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013822">
        <property type="entry name" value="Signal_recog_particl_SRP54_hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004390">
        <property type="entry name" value="SR_rcpt_FtsY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036225">
        <property type="entry name" value="SRP/SRP_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000897">
        <property type="entry name" value="SRP54_GTPase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042101">
        <property type="entry name" value="SRP54_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43134:SF7">
        <property type="entry name" value="PTHR43134:SF7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00448">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02881">
        <property type="entry name" value="SRP54_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00962">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00963">
        <property type="entry name" value="SRP54_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47364">
        <property type="entry name" value="SSF47364"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00064">
        <property type="entry name" value="ftsY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 6" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 6 11" id="KW-0675">Receptor</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SRP54_N" evidence="10">
        <location>
            <begin position="327"/>
            <end position="403"/>
        </location>
    </feature>
    <feature type="domain" description="AAA" evidence="8">
        <location>
            <begin position="416"/>
            <end position="563"/>
        </location>
    </feature>
    <feature type="domain" description="SRP54" evidence="9">
        <location>
            <begin position="417"/>
            <end position="618"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="23"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="50"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="177"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="424"/>
            <end position="431"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="506"/>
            <end position="510"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="570"/>
            <end position="573"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004287"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00920"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM00962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM00963"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG82629.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="620" mass="69168" checksum="1F0626AA5C1BE3DA" modified="2017-03-15" version="1">MAFFKKLKERLFKSSSKIDEGLDAIVSDGGEEETVEVAEAPSGPTPEEIAAAEEEARIAKEKAEAEEKARQEALEAEREAERERQAELEREREEERRRQEELEREREAERQRQEELERERLAEQQRQAELEREREAERQRLSELEAARAKAEEEERQRIAAEQKAAKEAAQAAADAAEKARLEEIARQQEEERKRLEAEAAEREAERSRLEAEAAEKEEQRLKEAEEARRREEERQREEAEAQEREDQRRREEEEAKAREAERQAQEAEAAERLAEAERLAEEARIAEEERLGELAARPAPQAVMEPMTTLTASPLDDFEGEEEPEEKRGLLGRLFGGQKKTVVRRTLDDDMLEQLEELLITADMGVDTALRVTANMAEGRMGKKLSVEEIKTLLSDEVSRIMDGVAKPMPLYSHKPQVVLVVGVNGSGKTTTIGKLASQFKAAGKSVVIAAGDTFRAAAVEQLQVWGERAGVPVLTAPEGTDPASLAFDAMDQAQRDGADLLMIDTAGRLQNRADLMEELSKIVRVIRKKDPDAPHNTLLVLDATTGQNALSQVKVFQELADVSGLVMTKLDGTAKGGVLVALADKFGLPIHAIGVGEQIDDLAPFDPEDFAKALVGLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N0V3</accession>
    <name>A0A1M5N0V3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">RNA polymerase sigma factor RpoH</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">RNA polymerase sigma-32 factor</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rpoH</name>
        <name evidence="9" type="ORF">SAMN05444003_1128</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Interacts with the RNA polymerase core enzyme.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the sigma-70 factor family. RpoH subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83200.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899854.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1128"/>
    <dbReference type="EnsemblBacteria" id="SHG83200">
        <property type="protein sequence ID" value="SHG83200"/>
        <property type="gene ID" value="SAMN05444003_1128"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009408">
        <property type="term" value="P:response to heat"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00961">
        <property type="entry name" value="Sigma70_RpoH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000943">
        <property type="entry name" value="RNA_pol_sigma70"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009042">
        <property type="entry name" value="RNA_pol_sigma70_r1_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007630">
        <property type="entry name" value="RNA_pol_sigma70_r4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012759">
        <property type="entry name" value="RNA_pol_sigma_RpoH_proteobac"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00140">
        <property type="entry name" value="Sigma70_r1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04545">
        <property type="entry name" value="Sigma70_r4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000770">
        <property type="entry name" value="RNA_pol_sigma-SigE/K"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00046">
        <property type="entry name" value="SIGMA70FCT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02392">
        <property type="entry name" value="rpoH_proteo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00716">
        <property type="entry name" value="SIGMA70_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0731">Sigma factor</keyword>
    <keyword evidence="2 6" id="KW-0346">Stress response</keyword>
    <keyword evidence="5 6" id="KW-0804">Transcription</keyword>
    <keyword evidence="1 6" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="RNA_pol_sigma70" evidence="8">
        <location>
            <begin position="255"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="6">
        <location>
            <begin position="256"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="region of interest" description="Sigma-70 factor domain-2" evidence="6">
        <location>
            <begin position="53"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="7">
        <location>
            <begin position="219"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Interaction with polymerase core subunit RpoC" evidence="6">
        <location>
            <begin position="77"/>
            <end position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00961"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS00716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG83200.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="298" mass="34228" checksum="E051385A46634A60" modified="2017-03-15" version="1">MSKYTNLPAPSPEQGLNRYMQEIRKFPMLEPEEEYMLAKRWVEDEDTESAHKLVTSHLRLAAKIAMGYRGYGLPQAEVISEANVGLMQAVKKFDPEKGFRLATYAMWWIRASIQEYVLRSWSMVKMGTTSAQKKLFFNLRKAKSRIGALEEGDMRPENVQKIASDLGVTEDEVISMNRRLSGGDASLNAMVGTDGDSATQWQDWLEDEDADQATAYEEHDELTARRELLAEAMDALNDREKDILMQRRLSEETITLEDLSSQYDVSRERIRQIEVRAFEKLQKRMKELAREKGMLATA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N3B2</accession>
    <name>A0A1M5N3B2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Capsular polysaccharide export protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1149</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83649.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1149"/>
    <dbReference type="EnsemblBacteria" id="SHG83649">
        <property type="protein sequence ID" value="SHG83649"/>
        <property type="gene ID" value="SAMN05444003_1149"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000271">
        <property type="term" value="P:polysaccharide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015774">
        <property type="term" value="P:polysaccharide transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007833">
        <property type="entry name" value="Capsule_polysaccharide_synth"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05159">
        <property type="entry name" value="Capsule_synth"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG83649.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="661" mass="73522" checksum="47A81D10FE24FDF3" modified="2017-03-15" version="1">MKEPRPLYVFNGGFLTQNRIKRILSLSGYYVRIGKPSSDDLVGVWGHSPTAPRGVRVSAATNADLVRVEDSFLRSVRTGRDGEAPLGLSIDKKGVHFDPSTVSDLEELLRDDPLDNTALLNRAKGAMAQLRRLHLSKYNTFDPNLLAPTPGYVLVIDQTRGDASVKASGCDLNSFREMLYYAQEEHPGTQIIIKSHPETNAGHRGGYFDENDCNDRISICTDPISPYTLFDGAIAVYTVSSQLGFEAVLTGHKPVVFGQPFYMGWGLTDDRKPLTRRQRKLTRAQLFAAAMILYPKWYDPYRDKLCELEDVIATLDAQARAWRDDRKGWVAQDIRLWKRTTFQKFFGGSHKVQFRTGGRAMPPKAMREMVWANSTDDAPELVRVEDGFIRSKGLGAELTPPLSLVLDDLGIYYDPSKPSRLETLIEQSPKLPETALLRAEKLIEKLQETGLSKYNLHQEPIPDLPKGRKILVPGQVEDDASIKLGTSDVSTNLTLLQAVREANPAAIIAYKPHPDVEAGLRTGAVPNTTDYADVILDQSNPIAAIEAVDEVWTMTSLLGFEALISGKRVTCLGTPFYAGWGLTDDRAKPIARRTALPDLRTLVHAVLIDYPRYYDPITKTACPVEVIVDRIANDEIAKPGAFNRSLSKLQGVFASYAHVWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N4G5</accession>
    <name>A0A1M5N4G5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Isoquinoline 1-oxidoreductase, beta subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1179</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84345.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899898.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1179"/>
    <dbReference type="EnsemblBacteria" id="SHG84345">
        <property type="protein sequence ID" value="SHG84345"/>
        <property type="gene ID" value="SAMN05444003_1179"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000674">
        <property type="entry name" value="Ald_Oxase/Xan_DH_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036856">
        <property type="entry name" value="Ald_Oxase/Xan_DH_a/b_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008274">
        <property type="entry name" value="AldOxase/xan_DH_Mopterin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037165">
        <property type="entry name" value="AldOxase/xan_DH_Mopterin-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012368">
        <property type="entry name" value="OxRdtase_Mopterin-bd_su_IorB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02738">
        <property type="entry name" value="Ald_Xan_dh_C2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036389">
        <property type="entry name" value="IOR_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01008">
        <property type="entry name" value="Ald_Xan_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54665">
        <property type="entry name" value="SSF54665"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56003">
        <property type="entry name" value="SSF56003"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="domain" description="Ald_Xan_dh_C" evidence="2">
        <location>
            <begin position="240"/>
            <end position="318"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM01008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG84345.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="744" mass="80188" checksum="B742AEE40BD9A52B" modified="2017-03-15" version="1">MGIVSSITRRTFLIGSSAIAGGVAFGIFAARQEPENPLVATLEEGEATFNPWVLIDSEKVTLIAPHGDKGQGVLSTQAALIAEEMDLDWGDFDVSFGEPSGAYWNRGFAEEGVPFMSTDDSRMAETMRGIVGGITKLAQVQGTGGSTSMPDSYVKLREAGAMARETLKAAASAKTGVPVSDLKTEIGKVILPDGSELKYTDLAADAADITPIKDTPLRDPSEWKYLGKPMERLDIVAKSTGTMMYGADLSVDGMKFATVCVNPRQGGEMLGFDATAAEALPGVEKVFPITNGVAAVASNTWYAIQAVRAVEFDWGPAPYPAEQDAHWTALENSFGEENLDSEWRNDGDVTTVEGEKVEAEYRSPYVAHAPLEPMNAIVKVTDDGVEIWTGHQMPIFLTQQVAAVAGIEPEQVTFHNQFMGGSFGHRLEFEHIKQAVEVAMEMKGTPVKMTYSREEDFAHDFPRHISMGRCTGVHADGKVVGLDVAVSSPSVLASQGGRLGQGLPGPDSQIAAGAWNNPYGFDNYRMRAYRAPELAPVSSWRAVGANGAGFIFDTILDETIHAAGADPLEERIRLMDHEPSRIALETVGEMSSWGGELAPNQGRGVAYVESFGVPTAQVVQVTNDDGFIKIDKVWIALDVGRVLDPVNFENLVQGGVVFGLGHAMNSEITYSDGMALQTNYHAHEAMRLYQTPEIFVRGLENQPKMRGVGEPPVPVAAPSLGNAIFAATGQRIREMPFNKYVDFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N7X3</accession>
    <name>A0A1M5N7X3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Di-and tricarboxylate transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_1231</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85577.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899941.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG85577">
        <property type="protein sequence ID" value="SHG85577"/>
        <property type="gene ID" value="SAMN05444003_1231"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008324">
        <property type="term" value="F:cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006813">
        <property type="term" value="P:potassium ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1450">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004680">
        <property type="entry name" value="Cit_transptr-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031312">
        <property type="entry name" value="Na/sul_symport_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006037">
        <property type="entry name" value="RCK_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036721">
        <property type="entry name" value="RCK_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03600">
        <property type="entry name" value="CitMHS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02080">
        <property type="entry name" value="TrkA_C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF116726">
        <property type="entry name" value="SSF116726"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01271">
        <property type="entry name" value="NA_SULFATE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51202">
        <property type="entry name" value="RCK_C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="36"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="65"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="99"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="150"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="181"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="402"/>
            <end position="431"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="451"/>
            <end position="474"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="481"/>
            <end position="501"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="507"/>
            <end position="525"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="532"/>
            <end position="550"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="570"/>
            <end position="590"/>
        </location>
    </feature>
    <feature type="domain" description="RCK C-terminal" evidence="7">
        <location>
            <begin position="216"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="domain" description="RCK C-terminal" evidence="7">
        <location>
            <begin position="301"/>
            <end position="384"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG85577.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="592" mass="63395" checksum="376A9953CE29B6F0" modified="2017-03-15" version="1">MFELFTLSSTQSAVLTLVVVLVMFALFLKEVFPTEVVAMIGASILLITGVLPYEDALAVFANPAPWTIAAMFIIVGALVRTGALTTLTQTAERQAQQNPARAIGGALVFVALASGIMNNTPLVVVMIPVFVQLAKTLGTSASKLLIPLSYAAIVGGTMTLLGTSTNLLVDGVARGQGLEPFGILEILPVGVVVVLWTFFYLYFIGSRLLPERTSMAGLLSDKSRMKFFSEAIITRDSNLIGREVLDVKLFKRDGVRLIDVIRGDASLRRNLKDVVLQAGDKVVLRTAMTELLSLQTNKDLRRIDQVSAVETTTVEALITPNCRMVGRTLGSMRLRRRFAVYPLAVHRRDTNLSQLDDVVIRVGDTLLLEGATEDIQRLTREMNLGDVSLPSERAYRRGHAPIAIGVLLGVVLLAALNVAPILLLAMVGVTIVLATKCIDAEEAFGFVDGQLMALIFAMLCVGSALQSSGAVLLIADTLSPVMQVLPGFFVILAVYLLSSILTELVSNNAVAVVMTPIAIGLAATLGVDPRPLVVAVMIAASASFATPIGYQTNTLVYGPGGYKFADFLKVGIPLNLSLAPIVSFVIPYIWPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NAQ4</accession>
    <name>A0A1M5NAQ4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Predicted oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1284</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86577.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899987.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1284"/>
    <dbReference type="EnsemblBacteria" id="SHG86577">
        <property type="protein sequence ID" value="SHG86577"/>
        <property type="gene ID" value="SAMN05444003_1284"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023210">
        <property type="entry name" value="NADP_OxRdtase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036812">
        <property type="entry name" value="NADP_OxRdtase_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00248">
        <property type="entry name" value="Aldo_ket_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51430">
        <property type="entry name" value="SSF51430"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldo_ket_red" evidence="1">
        <location>
            <begin position="17"/>
            <end position="339"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG86577.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="347" mass="38812" checksum="A6532C05A29C45CD" modified="2017-03-15" version="1">MKTLQLGRTGIEVPDWCLGTMTYGNQTPLEDAHLQIDMCLDVGLNFLDTAEMYPVNPIRAETVGRSEEVIGEWVAKSGRRSELTIATKVSGDNPGWVRGGAGYDGAMMREAIEGSLRRLQTDVIDVYQMHWPMRGSYMFRQNWTYDPSKQSRQETMDHMHDVLSALGELVKEGKIRAIGMSNESAWGMTKWVDFAEEHGLPRMATVQNEYSLLCRLYDTDMAEMAVNEDVTLLSFSPLACGLLTGKYQGGVVPEGSRMSIGPELGGRMTPRTLDVTQVYLDLAQKHGVDPVHMAMAWQRTRPFPISAIFGATTSDQLTHILEGRDLVLTDELCAEIDQLHRANPYPY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NCN6</accession>
    <name>A0A1M5NCN6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Phosphoenolpyruvate--protein phosphotransferase</fullName>
            <ecNumber evidence="5">2.7.3.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">SAMN05444003_1294</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>L-histidyl-[protein] + phosphoenolpyruvate = N(pros)-phospho-L-histidyl-[protein] + pyruvate</text>
            <dbReference type="Rhea" id="RHEA:23880"/>
            <dbReference type="Rhea" id="RHEA-COMP:9745"/>
            <dbReference type="Rhea" id="RHEA-COMP:9746"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:29979"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="ChEBI" id="CHEBI:64837"/>
            <dbReference type="EC" id="2.7.3.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the PEP-utilizing enzyme family.</text>
    </comment>
    <dbReference type="EC" id="2.7.3.9" evidence="5"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86743.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899997.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1294"/>
    <dbReference type="EnsemblBacteria" id="SHG86743">
        <property type="protein sequence ID" value="SHG86743"/>
        <property type="gene ID" value="SAMN05444003_1294"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008965">
        <property type="term" value="F:phosphoenolpyruvate-protein phosphotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009401">
        <property type="term" value="P:phosphoenolpyruvate-dependent sugar phosphotransferase system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.274.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003018">
        <property type="entry name" value="GAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008279">
        <property type="entry name" value="PEP-util_enz_mobile_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000121">
        <property type="entry name" value="PEP_util_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036637">
        <property type="entry name" value="Phosphohistidine_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006318">
        <property type="entry name" value="PTS_EI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008731">
        <property type="entry name" value="PTS_EIN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036618">
        <property type="entry name" value="PtsI_HPr-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_Kinase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040442">
        <property type="entry name" value="Pyrv_Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13185">
        <property type="entry name" value="GAF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05524">
        <property type="entry name" value="PEP-utilisers_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00391">
        <property type="entry name" value="PEP-utilizers"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02896">
        <property type="entry name" value="PEP-utilizers_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00065">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47831">
        <property type="entry name" value="SSF47831"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="SSF51621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52009">
        <property type="entry name" value="SSF52009"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01417">
        <property type="entry name" value="PTS_I_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-0598">Phosphotransferase system</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0762">Sugar transport</keyword>
    <keyword evidence="12" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="domain" description="GAF" evidence="11">
        <location>
            <begin position="25"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012232"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG86743.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="759" mass="83417" checksum="F986DC238E5BB070" modified="2017-03-15" version="1">MAERTESESRKLLRRLQAALAEDNAGQERLDHVVALIADSMQTEVCSIYLFRDPETLELCATEGLEKASVHQTRLKLGEGLVGRAAKTRKVINTADAPSAKGFRYMPETGEERYSSFCGVPIQRLGDALGVLVVQSKDAREFTIDEVYALEVVAMVLAEMTELGAFVGEGAALSALHKNSVMFRGSVAQEGVSDGQVYLHEPRVVVTNPISEDPEQELERLTSAVEELRFTVDEMLSGTKTTDKEQKQVFEAYRMFANSRSWMRRMEADVRNGLSAEAAVEKEQSLARTRLGEAGDAYMIERLHDLDDLSNRLLRILTGQGADTGAEMPDRPILIARNIGPGELLDYGKGLKGIILEEGSVGSHATIVARAWAIPLIINAKGITTEALNGDRILVDGEQGIIHLRPDDQVQSAFADKMAMQTRAQERYASIRDEAATDKTGVTVGLHMNAGLMADLPSLESSGAEGVGLFRTELQFLVRNKMPQRAELSALYRRVLDSADGKRVAFRTLDIGSDKVLPYMKPNDEPNPAMGWRAIRVGLDKPGVLRMQLQALVRAADGGPLTVMFPFITLRSEFREAKAALDKVLAREKKLGHALPSSVEVGAMLETPSLGFAPESFYEEVDFISVGGNDLKQFFYAADRENERVRRRYDTLNVSFLGFLEQVVNRCNAHGVPVSFCGEDAGRPVEALCFAAIGFRTLSMRPASIGPVKHLIRQVDLSEVKQVIDDARESGVQSVRRAVSDYLVDQARLTGMLPTTRAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5ND89</accession>
    <name>A0A1M5ND89_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Peptidoglycan-associated protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">pal</name>
        <name evidence="13" type="ORF">SAMN05444003_1342</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">The Tol-Pal system is composed of five core proteins: the inner membrane proteins TolA, TolQ and TolR, the periplasmic protein TolB and the outer membrane protein Pal. They form a network linking the inner and outer membranes and the peptidoglycan layer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the Pal lipoprotein family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900036.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1342"/>
    <dbReference type="EnsemblBacteria" id="SHG87480">
        <property type="protein sequence ID" value="SHG87480"/>
        <property type="gene ID" value="SAMN05444003_1342"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07185">
        <property type="entry name" value="OmpA_C-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02204">
        <property type="entry name" value="Pal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006664">
        <property type="entry name" value="OMP_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006665">
        <property type="entry name" value="OmpA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006690">
        <property type="entry name" value="OMPA-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036737">
        <property type="entry name" value="OmpA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039001">
        <property type="entry name" value="Pal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014169">
        <property type="entry name" value="Pal_lipo_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00691">
        <property type="entry name" value="OmpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01021">
        <property type="entry name" value="OMPADOMAIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103088">
        <property type="entry name" value="SSF103088"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02802">
        <property type="entry name" value="Pal_lipo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01068">
        <property type="entry name" value="OMPA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51123">
        <property type="entry name" value="OMPA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="1 8" id="KW-0132">Cell division</keyword>
    <keyword evidence="5" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="6 13" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="3 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0564">Palmitate</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 11" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="11">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009912568" description="Peptidoglycan-associated protein" evidence="11">
        <location>
            <begin position="18"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="domain" description="OmpA-like" evidence="12">
        <location>
            <begin position="55"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="23"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="31"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHG87480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="173" mass="18259" checksum="A541C421E0B8D16D" modified="2017-03-15" version="1">MKTTTKALLVVLTLATAACTRPDRFGGEDGSASGSNGSGFDAGQSGAASDPTSPEYFTQTVGDRVLFAVDQSVLTPAGQATLDGQATWLITNADYMAIVEGHADEQGTREYNVALGARRANAVREYLISKGVDANRLRTISYGKERPVEVCSDESCYSQNRRAVTIISIGALS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NE14</accession>
    <name>A0A1M5NE14_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Cytochrome b561</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1361</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87814.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900052.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1361"/>
    <dbReference type="EnsemblBacteria" id="SHG87814">
        <property type="protein sequence ID" value="SHG87814"/>
        <property type="gene ID" value="SAMN05444003_1361"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022904">
        <property type="term" value="P:respiratory electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011577">
        <property type="entry name" value="Cyt_b561_bac/Ni-Hgenase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016174">
        <property type="entry name" value="Di-haem_cyt_TM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01292">
        <property type="entry name" value="Ni_hydr_CYTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81342">
        <property type="entry name" value="SSF81342"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="41"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="90"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="118"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="domain" description="Ni_hydr_CYTB" evidence="4">
        <location>
            <begin position="8"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01292"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG87814.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="169" mass="18185" checksum="762A9A9490F4CB58" modified="2017-03-15" version="1">MTETAKPHGFVTKGLHWVSAGLLAFGYFKGLDNVSQLADPALFQFEIIFALILGSVFLLRLLWTKAVGGTTRLPDSAPTWEHKISKLVHIGLYASVFAIVLSGLGIALGFATPALSGLFMGAMIALHEASLVVLPALLMTHIAGALWHKLIRRDGVMESMTGRLPSFSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NE37</accession>
    <name>A0A1M5NE37_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Major Facilitator Superfamily protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1356</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87727.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900047.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG87727">
        <property type="protein sequence ID" value="SHG87727"/>
        <property type="gene ID" value="SAMN05444003_1356"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="57"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="83"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="105"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="143"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="175"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="214"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="251"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="284"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="308"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="340"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="369"/>
            <end position="388"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG87727.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="409" mass="45771" checksum="62526B58F16B6961" modified="2017-03-15" version="1">MKILRLSDAGAYPIWRRPITFLILGAIGMPIAFNTWSALLNNFVIEVANFDGSDIGWLHTVREIPGFLAIGVIAILMFMREQVLGVVSLFVLGIATALTSYFPSMAGILTLTMLSSIGFHYYETVNQSLQLQWIKKEKAPQTLGWLMAVGSGATLIAYVLIVLTWERYDLSYRFVYWMGGGATALIAVYMYFFIPQFEAEHPQRKELVLRKRYWLYYLLQFMAGARRQIFVVFAGFMMVERFGFEVHEITQLYLINLIFTIVAAPLMGRVVAVFGERRALLFEYFGLVCVFLAYGGVYYFGWGVLVAAGLYILDHIFFALALALKTYFQKIADPGDIAPTAAVAFTINHIAAVFLPAGLGYLWLVSPQAVFILAASMAATSFLLALLIPRHPSRGNETIFSQKVAAPAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NEM3</accession>
    <name>A0A1M5NEM3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 16">Phosphatidylcholine synthase</fullName>
            <shortName evidence="16">PC synthase</shortName>
            <shortName evidence="16">PCS</shortName>
            <ecNumber evidence="6 16">2.7.8.24</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="15 16">CDP-diglyceride-choline O-phosphatidyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="18" type="ORF">SAMN05444003_1366</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="18 19" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18 19">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="16">Condenses choline with CDP-diglyceride to produce phosphatidylcholine and CMP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 16">
            <text>a CDP-1,2-diacyl-sn-glycerol + choline = a 1,2-diacyl-sn-glycero-3-phosphocholine + CMP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:14597"/>
            <dbReference type="ChEBI" id="CHEBI:15354"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57643"/>
            <dbReference type="ChEBI" id="CHEBI:58332"/>
            <dbReference type="ChEBI" id="CHEBI:60377"/>
            <dbReference type="EC" id="2.7.8.24"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 16">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4 16">Cell inner membrane</location>
            <topology evidence="4 16">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5 16">Belongs to the CDP-alcohol phosphatidyltransferase class-I family.</text>
    </comment>
    <dbReference type="EC" id="2.7.8.24" evidence="6 16"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87907.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900057.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1366"/>
    <dbReference type="EnsemblBacteria" id="SHG87907">
        <property type="protein sequence ID" value="SHG87907"/>
        <property type="gene ID" value="SAMN05444003_1366"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050520">
        <property type="term" value="F:phosphatidylcholine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008654">
        <property type="term" value="P:phospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1760">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000462">
        <property type="entry name" value="CDP-OH_P_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043130">
        <property type="entry name" value="CDP-OH_PTrfase_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026027">
        <property type="entry name" value="PcS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01066">
        <property type="entry name" value="CDP-OH_P_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000851">
        <property type="entry name" value="PcS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 16" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="16" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 16" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="13 16" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="16" id="KW-0464">Manganese</keyword>
    <keyword evidence="14 16 17" id="KW-0472">Membrane</keyword>
    <keyword evidence="16" id="KW-0594">Phospholipid biosynthesis</keyword>
    <keyword evidence="16" id="KW-1208">Phospholipid metabolism</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10 16 18" id="KW-0808">Transferase</keyword>
    <keyword evidence="11 17" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="12 17" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="7"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="35"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="65"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="97"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="179"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="203"/>
            <end position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00010441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00013195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00015623"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00033321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="PIRNR" id="PIRNR000851"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="SHG87907.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="231" mass="25868" checksum="4CB5D61390792417" modified="2017-03-15" version="1">MNIRTKALAVHLFTATGAVFAMLALLAAADRNWSLMFLWLVVAFIVDGIDGPLARKYDVKTNAPIFDGVLLDLIIDYLTYVFIPAYALYVSGLMDGWSGWVAIIVITFASAMYFCDTRMKTKDYSFKGFPGCFNMLILVLFALQPHWSICLALVLVLSLAMFLPIKFVHPVRTERWRTITLPMAFAWTFFAAWAAWTNFDPPLMAHYGLMATSIYLLAAGAAQQMVYGKDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NGA0</accession>
    <name>A0A1M5NGA0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Biotin/methionine sulfoxide reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1398</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88497.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900458.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1398"/>
    <dbReference type="EnsemblBacteria" id="SHG88497">
        <property type="protein sequence ID" value="SHG88497"/>
        <property type="gene ID" value="SAMN05444003_1398"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043546">
        <property type="term" value="F:molybdopterin cofactor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009010">
        <property type="entry name" value="Asp_de-COase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006657">
        <property type="entry name" value="MoPterin_dinucl-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006656">
        <property type="entry name" value="Mopterin_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006655">
        <property type="entry name" value="Mopterin_OxRdtase_prok_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00384">
        <property type="entry name" value="Molybdopterin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01568">
        <property type="entry name" value="Molydop_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50692">
        <property type="entry name" value="SSF50692"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00490">
        <property type="entry name" value="MOLYBDOPTERIN_PROK_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Molybdopterin" evidence="3">
        <location>
            <begin position="46"/>
            <end position="496"/>
        </location>
    </feature>
    <feature type="domain" description="Molydop_binding" evidence="4">
        <location>
            <begin position="610"/>
            <end position="729"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010312"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01568"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG88497.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="755" mass="83133" checksum="F168729F213A2859" modified="2017-03-15" version="1">MKYTAAHWGAYQFNDGDTDLTPLTGDPAPSRIGKGWVSAVRNLDTRVLKPAVRKGWLEGDGGAHRCNDSFVEVSWDRALDLVSREMARVREVHGDSAIFGGSYGWSSSGRFHHAQSQMRRFLSLGGGFTSSRETYSHAAAEVLFPHILGMKNTAFQDQVTAQPLVSEHCEIMLAFGGISARTAQVMSAGNSYHEVGPWIDELDAKGVRVITISPEKGEAKGEWWAIKPGTDTALILALTYEIVAAGKHDRPFLDRYTSGWDHFENYLVGRSDGLPKTAEWAAQICDLPSDQIKALAADLMRSKSMISMTWSMQRADHGEQPIWAGLVLACALGQIGQPGTGYAFGYGSTSPVGRAAKLFPWPSFPVPINPVSEFIPVARITDCLNAPGEPYRYNLTTRTYPDIRLIWWSGGNPFHHHQDLCKLEAAWCKPETIITNEHSWTATARRADIVLPATTPLERNDMMLNRRDPTLLYMSKMMEPAGQARHDFDIFSELSDRMGFGPLFTKGLDEEAWQANMWARCETVAKQHGFELPEWEAFKDIGRFDIPDAGEQRIALKGFIDDPEGEALGSETGKITVSNQSFAGEEMNDCFGHPAWIEPTEGIALEANEYHLITGQPDTRLHSQNDMGDESLGSKIDGREVATLHPEAAARIGVVAGDVIRLYNARGACLAGVMIREVLRSDCISLPTGAWYDPQIVDGDYLEVHGNPNALTLDKGCSELSQGNAAHTCVVRAEKWSKPLPDLTVSGPPRFVTEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NGK1</accession>
    <name>A0A1M5NGK1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, ArsR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1406</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88648.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900092.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG88648">
        <property type="protein sequence ID" value="SHG88648"/>
        <property type="gene ID" value="SAMN05444003_1406"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001845">
        <property type="entry name" value="HTH_ArsR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00778">
        <property type="entry name" value="HTHARSR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00418">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50987">
        <property type="entry name" value="HTH_ARSR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH arsR-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG88648.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="95" mass="10563" checksum="4933E1244123CDAB" modified="2017-03-15" version="1">MSDSLSTILAALSDPTRRAVVERLILGQASVSELHAPHDMALPTFMRHLNVLEASGLVRSIKRGRVRTCQISMAPILEVQGWLAWQTTLREGRED</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NHY3</accession>
    <name>A0A1M5NHY3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Broad specificity phosphatase PhoE</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1426</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89065.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900111.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1426"/>
    <dbReference type="EnsemblBacteria" id="SHG89065">
        <property type="protein sequence ID" value="SHG89065"/>
        <property type="gene ID" value="SAMN05444003_1426"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd07067">
        <property type="entry name" value="HP_PGM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013078">
        <property type="entry name" value="His_Pase_superF_clade-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029033">
        <property type="entry name" value="His_PPase_superfam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00300">
        <property type="entry name" value="His_Phos_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00855">
        <property type="entry name" value="PGAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53254">
        <property type="entry name" value="SSF53254"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG89065.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="192" mass="21867" checksum="A3521909EA66FC5F" modified="2017-03-15" version="1">MTHFWWVRHGPTHQKNFVGWRDVPADLSDADLIGRVSDYLPQDAVVISSDLSRAITTADVIQDRRERLPHDPRLREFNFGAWDGLKFDEVAKRDPELSRAFWEKPGDLSAPDGESWNDVSSRVNTAVDHLIQTQSATHIVAVAHIGVIMTQIQKVVGDDPYKAMSFEIDNFSVTDLRYSDGQWFRGEINHLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NJM6</accession>
    <name>A0A1M5NJM6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Purine nucleoside phosphorylase DeoD-type</fullName>
            <shortName evidence="4">PNP</shortName>
            <ecNumber evidence="4">2.4.2.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">deoD</name>
        <name evidence="6" type="ORF">SAMN05444003_1458</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the reversible phosphorolytic breakdown of the N-glycosidic bond in the beta-(deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>a purine 2'-deoxy-D-ribonucleoside + phosphate = 2-deoxy-alpha-D-ribose 1-phosphate + a purine nucleobase</text>
            <dbReference type="Rhea" id="RHEA:36431"/>
            <dbReference type="ChEBI" id="CHEBI:26386"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57259"/>
            <dbReference type="ChEBI" id="CHEBI:142361"/>
            <dbReference type="EC" id="2.4.2.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>a purine D-ribonucleoside + phosphate = a purine nucleobase + alpha-D-ribose 1-phosphate</text>
            <dbReference type="Rhea" id="RHEA:19805"/>
            <dbReference type="ChEBI" id="CHEBI:26386"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57720"/>
            <dbReference type="ChEBI" id="CHEBI:142355"/>
            <dbReference type="EC" id="2.4.2.1"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homohexamer; trimer of homodimers.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the PNP/UDP phosphorylase family.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.1" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89750.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900140.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1458"/>
    <dbReference type="EnsemblBacteria" id="SHG89750">
        <property type="protein sequence ID" value="SHG89750"/>
        <property type="gene ID" value="SAMN05444003_1458"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004731">
        <property type="term" value="F:purine-nucleoside phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009164">
        <property type="term" value="P:nucleoside catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042278">
        <property type="term" value="P:purine nucleoside metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd09006">
        <property type="entry name" value="PNP_EcPNPI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1580">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01627">
        <property type="entry name" value="Pur_nucleosid_phosp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004402">
        <property type="entry name" value="DeoD-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018016">
        <property type="entry name" value="Nucleoside_phosphorylase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000845">
        <property type="entry name" value="Nucleoside_phosphorylase_d"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035994">
        <property type="entry name" value="Nucleoside_phosphorylase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43691:SF2">
        <property type="entry name" value="PTHR43691:SF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01048">
        <property type="entry name" value="PNP_UDP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53167">
        <property type="entry name" value="SSF53167"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00107">
        <property type="entry name" value="deoD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01232">
        <property type="entry name" value="PNP_UDP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PNP_UDP_1" evidence="5">
        <location>
            <begin position="16"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="region of interest" description="Phosphate binding" evidence="4">
        <location>
            <begin position="87"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="region of interest" description="Purine nucleoside binding" evidence="4">
        <location>
            <begin position="179"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="region of interest" description="Purine nucleoside binding" evidence="4">
        <location>
            <begin position="203"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="4">
        <location>
            <position position="204"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="4"/>
        </location>
        <ligand>
            <name>a purine D-ribonucleoside</name>
            <dbReference type="ChEBI" id="CHEBI:142355"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="20"/>
        </location>
        <ligand>
            <name>phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="24"/>
        </location>
        <ligand>
            <name>phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="43"/>
        </location>
        <ligand>
            <name>phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="site" description="Important for catalytic activity" evidence="4">
        <location>
            <position position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01627"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG89750.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="234" mass="25634" checksum="E91951160FB56ABC" modified="2017-03-15" version="1">MSIHIGANPGDIAETVLMPGDPYRAKWAAETFLQDVVCINEVRGMLGFTGTWNGHRVTIQGSGMGMPSLSIYVNELIKDYDAKTLIRIGSCGAMQEHVGIRDVILATTSSTLSTPSIGMFKELNFAPTADFDLLHKAYHAAESKPSPVHVGGIYSADVFYDERPDLNEQMTRHGILAVEMECAELYTLAARYKRRALAVLTVSDHLITHEALPSEDREKSFGDMVEIALEAAFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NM57</accession>
    <name>A0A1M5NM57_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Voltage-gated potassium channel</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">SAMN05444003_1491</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90525.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900168.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1491"/>
    <dbReference type="EnsemblBacteria" id="SHG90525">
        <property type="protein sequence ID" value="SHG90525"/>
        <property type="gene ID" value="SAMN05444003_1491"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008076">
        <property type="term" value="C:voltage-gated potassium channel complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005249">
        <property type="term" value="F:voltage-gated potassium channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.350">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005821">
        <property type="entry name" value="Ion_trans_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028325">
        <property type="entry name" value="VG_K_chnl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027359">
        <property type="entry name" value="Volt_channel_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11537">
        <property type="entry name" value="PTHR11537"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00520">
        <property type="entry name" value="Ion_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="10 13" id="KW-0407">Ion channel</keyword>
    <keyword evidence="8" id="KW-0406">Ion transport</keyword>
    <keyword evidence="9 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0630">Potassium</keyword>
    <keyword evidence="5" id="KW-0631">Potassium channel</keyword>
    <keyword evidence="3" id="KW-0633">Potassium transport</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 11" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="27"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="61"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="92"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="151"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="182"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="215"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="domain" description="Ion_trans" evidence="12">
        <location>
            <begin position="28"/>
            <end position="244"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF00520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHG90525.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="318" mass="35270" checksum="BF50DE05E69BBAE1" modified="2017-03-15" version="1">MSEHASLRARVYWWLERPDREARGPRLLEIALILLITANVTAVILETVSTIYAVWQPAFDVFERISLTMFIIEYAARLWVVPENPQNRSRRAWVVTPSAIIDLLAILPALLVLLFPVDLRILRAFRIVRLLKLTRYSPALGMLLAVFEEEAGAFFAGFFILIVMLVLAASGAWLVEHQVQPDAFGSIPAAMWWAVATLTTVGYGDVTPVTIAGKIFGAIITVLGIGMAALPAGILASGLNDQLHRRRSSMQAEFRRALEDGFICDAEEVEIEDLRKSLGLSYRAALQIRSEVEAEVQARLHLCPSCGRSLSDQKETSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NP59</accession>
    <name>A0A1M5NP59_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Nuclease homologue</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1525</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91320.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900199.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1525"/>
    <dbReference type="EnsemblBacteria" id="SHG91320">
        <property type="protein sequence ID" value="SHG91320"/>
        <property type="gene ID" value="SAMN05444003_1525"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035437">
        <property type="entry name" value="SNase_OB-fold_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016071">
        <property type="entry name" value="Staphylococal_nuclease_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010916">
        <property type="entry name" value="TonB_box_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00565">
        <property type="entry name" value="SNase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00318">
        <property type="entry name" value="SNc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50199">
        <property type="entry name" value="SSF50199"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50830">
        <property type="entry name" value="TNASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00430">
        <property type="entry name" value="TONB_DEPENDENT_REC_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013133021" evidence="1">
        <location>
            <begin position="19"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="domain" description="TNase-like" evidence="2">
        <location>
            <begin position="22"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50830"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG91320.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="131" mass="14226" checksum="6D1ABC05767AAFB8" modified="2017-03-15" version="1">MLRVLVVALTTVATTASASGLHVRDADTIVVDGTPVRLNGVDAPELRTRAGQDARRWMVSYLRGKSIECDLNGERTHDRWVGVCYADGEDVGAAVIAAGHALDCRRYSGGRYAYLETPAAKSRIRRASYCD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NPK6</accession>
    <name>A0A1M5NPK6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Putrescine transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1534</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91514.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1534"/>
    <dbReference type="EnsemblBacteria" id="SHG91514">
        <property type="protein sequence ID" value="SHG91514"/>
        <property type="gene ID" value="SAMN05444003_1534"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="28"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="103"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="135"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="186"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="285"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="100"/>
            <end position="306"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG91514.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="317" mass="35668" checksum="FCE39A7EC21AC9BB" modified="2017-03-15" version="1">MTDATQPSEKLPASSWMRDLARRAQENWRLIVIAIPFVWLLFFFLAPFFIVAKISLAELAIASPPFTRMMEWSNNGIVTIRIVFDNFAYIIDDPLYFDTYLNSIKISASATLLCLLLGYPIAYAIVRSGPVAKPIFLFLIILPFWTSFLLRVYAWMGLLADQGTINNLLIGLGLIDEPIRMLYTEFAVYVGIVYTYMPFMILPLYANMERLDGSLNEAAADLGARQTTTFFRITLPLTKPGIIAGSLLVFIPATGEYVVPDLLGGGNVQMIGRVLFNEFSRNSDWPVASAVAIMLLFFLVVPMMIFQYFQGKSSEVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NQY2</accession>
    <name>A0A1M5NQY2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Monoamine oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1537</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1537"/>
    <dbReference type="EnsemblBacteria" id="SHG91579">
        <property type="protein sequence ID" value="SHG91579"/>
        <property type="gene ID" value="SAMN05444003_1537"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002937">
        <property type="entry name" value="Amino_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01593">
        <property type="entry name" value="Amino_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amino_oxidase" evidence="1">
        <location>
            <begin position="177"/>
            <end position="417"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG91579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="424" mass="45237" checksum="7A33699B5B01B5AD" modified="2017-03-15" version="1">MVGRVMESLSQDPDVIVIGAGAAGLSAAKALRAAGLVTNVLEAANHVGGRCVTDTTTFSTPFDRGGSWMHSANINPLARQAEAVDARLHKTEWSLTAAHCFDRTLEGEDFADYSAYEDVIWNVASGVKEGTVDTTVDAALPFSPWKAPAKHLISTMDGADADMISLHDTAAYDWGDDSDWLVEGGYGAFVARMHADVPVKCGCPVTEIRHGGATPEVVTPEGTLSAEQVVVTVSTGVLGAERIRFEPSLPVDTLRAIDQLPNGLLNKVGIEFDPVWQEAVLGDRFDFHANSDQFVTLFFGFYGTGLATGFIGGRCADQLEQDGPGAATALCRDSLRSFFGSDIEKMILKTTETAWRSDPLTLGSYSYAKPGGAGARQMLATPVNDRLFFAGEATMPHSYSTVHGAWLSGQRVAQEILAVRSKGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-06-02" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PJM5</accession>
    <name>A0A1M5PJM5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1682</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH01992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH01992">
        <property type="protein sequence ID" value="SHH01992"/>
        <property type="gene ID" value="SAMN05444003_1682"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009912955" evidence="2">
        <location>
            <begin position="20"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="73"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="78"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH01992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="141" mass="16509" checksum="894382D3412E8A48" modified="2017-03-15" version="1">MKLVYSGLLSLTLAQPAFAQTAEEQIITQLLGQGYTEFRIERTWLGRVRIEATDGDRDRELVFNPYTGEILRDRWYVEDDDDDADEDDDEEDDEDADDDEDDDEKDDDDEDDDEDDDEDEDDDDEDDDDEDEEDDEEDDDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PJQ0</accession>
    <name>A0A1M5PJQ0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Beta-lactamase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1679</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH01945.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900501.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1679"/>
    <dbReference type="EnsemblBacteria" id="SHH01945">
        <property type="protein sequence ID" value="SHH01945"/>
        <property type="gene ID" value="SAMN05444003_1679"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001466">
        <property type="entry name" value="Beta-lactam-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00144">
        <property type="entry name" value="Beta-lactamase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="domain" description="Beta-lactamase" evidence="2">
        <location>
            <begin position="88"/>
            <end position="358"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00144"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH01945.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="384" mass="42132" checksum="4D6C3A0289639764" modified="2017-03-15" version="1">MLKWLGRIVVFLGVIAIIGWVWKGEELKRLLAVNSLFSEEKIVNNFSNMDTMFLNTSLTSSGDVSELPVAATVTLPDGTEDWLESRSATALVVLKDGAVVFEDYYQGTGEDDLRISWSMAKSWLSALFGILLEEGAIGSVDDPVTQYAPSLVGSAYDGATIKDVLQMSSGVVFDEDYLDYDSDINKMGRVLALGGSMDEFAAGLTETYADPGETWQYVSIDTHVLGMVVRGATGRSLTDLLSEKIAEPMGLEAAPYYLTDGYGVAFALGGLNMKSRDYARFGQMIANGGRWNDQQIVPEAWVEESTAPSAPTQTGETRYGYQWWIPVGSEDGQFMARGIYDQYTYIDPSRNVVIVLNAANRSFREAGVGRGNEEMFRQIAESLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PMR2</accession>
    <name>A0A1M5PMR2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Probable membrane transporter protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_1737</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the 4-toluene sulfonate uptake permease (TSUP) (TC 2.A.102) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03068.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900547.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1737"/>
    <dbReference type="EnsemblBacteria" id="SHH03068">
        <property type="protein sequence ID" value="SHH03068"/>
        <property type="gene ID" value="SAMN05444003_1737"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002781">
        <property type="entry name" value="TM_pro_TauE-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01925">
        <property type="entry name" value="TauE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="30"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="76"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="104"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="170"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="195"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="225"/>
            <end position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363041"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH03068.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="246" mass="25582" checksum="E22E6BDA851361C2" modified="2017-03-15" version="1">MPFDLGPGTAAFLAVSLLGAAYVRGYSGFGFSAIFIASAALVTNPLPLIPVVFACEIAMTALQARGIRGHIDWRRVFAMLGGAAIALPFSVSFILSVGSDTARLAVSLIVLIMSLILLTGWTLQRRIAAPGHIGVGVVSGVCNSAGVGGLPVAAFMTAQPMAAATFRATMIVYLTGLDSITLPFLWHGGLVTLDTLNGLAIAFPILGLGIWLGSRRFNATSPDGFRRFAIILLLALATLGLIRALV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PQG4</accession>
    <name>A0A1M5PQG4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1788</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04085.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900588.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1788"/>
    <dbReference type="EnsemblBacteria" id="SHH04085">
        <property type="protein sequence ID" value="SHH04085"/>
        <property type="gene ID" value="SAMN05444003_1788"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010421">
        <property type="entry name" value="TrcR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06242">
        <property type="entry name" value="DUF1013"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="195"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="222"/>
            <end position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH04085.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="254" mass="28100" checksum="50D0C4ECF8DFCC04" modified="2017-03-15" version="1">MSNTPIMAKATAVWLCDNTTITFKQIADFCGFHELEVQGIADGDVAVGVKGFDPIANKQLTQEEIEKAEKDPLHKLKLLYNPASAGEEKRRGPRYTPLSKRQDRPASIYWLVKFHPELSDGQISKLVGTTKPTIQSIRERTHWNINNLEPIDPVALGLCKQSELDLAVQKANAKKAKEGTVMSDDERRKLVSTEQSLTMDAEPKIPSAIAGLETFSLGDPREEDADAEEEESNVDVADADSFFNLPESSDSDED</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PRK7</accession>
    <name>A0A1M5PRK7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Small ribosomal subunit biogenesis GTPase RsgA</fullName>
            <ecNumber evidence="3">3.6.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rsgA</name>
        <name evidence="6" type="ORF">SAMN05444003_1782</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="3">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Monomer. Associates with 30S ribosomal subunit, binds 16S rRNA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.-" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03963.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900875.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1782"/>
    <dbReference type="EnsemblBacteria" id="SHH03963">
        <property type="protein sequence ID" value="SHH03963"/>
        <property type="gene ID" value="SAMN05444003_1782"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042274">
        <property type="term" value="P:ribosomal small subunit biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01854">
        <property type="entry name" value="YjeQ_EngC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01820">
        <property type="entry name" value="GTPase_RsgA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030378">
        <property type="entry name" value="G_CP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004881">
        <property type="entry name" value="Ribosome_biogen_GTPase_RsgA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010914">
        <property type="entry name" value="RsgA_GTPase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32120">
        <property type="entry name" value="PTHR32120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03193">
        <property type="entry name" value="RsgA_GTPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00157">
        <property type="entry name" value="TIGR00157"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50936">
        <property type="entry name" value="ENGC_GTPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51721">
        <property type="entry name" value="G_CP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 3" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0690">Ribosome biogenesis</keyword>
    <keyword evidence="3" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="CP-type G" evidence="5">
        <location>
            <begin position="98"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="domain" description="ENGC_GTPASE" evidence="4">
        <location>
            <begin position="104"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="143"/>
            <end position="146"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="195"/>
            <end position="203"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="275"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="280"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="282"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="288"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01820"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51721"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH03963.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="344" mass="37560" checksum="D6A691CF03CDFE78" modified="2017-03-15" version="1">MTPTYSLSDLGWSAFFLSQLDLDELVTTTPARVSSVHRDRISVLTEAGPTDLVTETGVSTGDIAVGDWVLSHPTEHRVVRQLDRKSTLQRGSEHHVRERQLIAANLDTLFITTSCNADFNVARLERYLALAHDADVTPVILITKADQVDDPSTYVDEAQKLGRSLEVIAMNAKQTESAELLTPWSGKGQTVALVGSSGVGKTTLTNALTGGKAATQGIREDDARGRHTTTGRSLHALPSGGWLIDTPGMRGLGVADVSYGIDATFPEISELAGQCKFRDCKHEGEPGCAVMAAIERGEIDPDRLRRYQKLKREDYYASETVAEAHIRQRKFGKMVKSAMKKKAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PSU4</accession>
    <name>A0A1M5PSU4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 8">Corrinoid adenosyltransferase</fullName>
            <ecNumber evidence="5 8">2.5.1.17</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Cob(II)alamin adenosyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Cob(II)yrinic acid a,c-diamide adenosyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_1819</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7 8">Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 8">
            <text>2 ATP + 2 cob(II)alamin + reduced [electron-transfer flavoprotein] = 2 adenosylcob(III)alamin + 3 H(+) + oxidized [electron-transfer flavoprotein] + 2 triphosphate</text>
            <dbReference type="Rhea" id="RHEA:28671"/>
            <dbReference type="Rhea" id="RHEA-COMP:10685"/>
            <dbReference type="Rhea" id="RHEA-COMP:10686"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16304"/>
            <dbReference type="ChEBI" id="CHEBI:18036"/>
            <dbReference type="ChEBI" id="CHEBI:18408"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
            <dbReference type="ChEBI" id="CHEBI:58307"/>
            <dbReference type="EC" id="2.5.1.17"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>2 ATP + 2 cob(II)yrinate a,c diamide + reduced [electron-transfer flavoprotein] = 2 adenosylcob(III)yrinate a,c-diamide + 3 H(+) + oxidized [electron-transfer flavoprotein] + 2 triphosphate</text>
            <dbReference type="Rhea" id="RHEA:11528"/>
            <dbReference type="Rhea" id="RHEA-COMP:10685"/>
            <dbReference type="Rhea" id="RHEA-COMP:10686"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:18036"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
            <dbReference type="ChEBI" id="CHEBI:58307"/>
            <dbReference type="ChEBI" id="CHEBI:58503"/>
            <dbReference type="ChEBI" id="CHEBI:58537"/>
            <dbReference type="EC" id="2.5.1.17"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 8">Cofactor biosynthesis; adenosylcobalamin biosynthesis; adenosylcobalamin from cob(II)yrinate a,c-diamide: step 2/7.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 8">Belongs to the Cob(I)alamin adenosyltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.17" evidence="5 8"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04701.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900616.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1819"/>
    <dbReference type="EnsemblBacteria" id="SHH04701">
        <property type="protein sequence ID" value="SHH04701"/>
        <property type="gene ID" value="SAMN05444003_1819"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00148">
        <property type="reaction ID" value="UER00233"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008817">
        <property type="term" value="F:cob(I)yrinic acid a,c-diamide adenosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006779">
        <property type="term" value="P:porphyrin-containing compound biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00561">
        <property type="entry name" value="CobA_CobO_BtuR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003724">
        <property type="entry name" value="CblAdoTrfase_CobA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025826">
        <property type="entry name" value="Co_AT_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12557">
        <property type="entry name" value="Co_AT_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02572">
        <property type="entry name" value="CobA_CobO_BtuR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015617">
        <property type="entry name" value="Adensltrnsf_CobA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00708">
        <property type="entry name" value="cobA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 8" id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Co_AT_N" evidence="9">
        <location>
            <begin position="2"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001328"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007487"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012454"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00024929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRNR" id="PIRNR015617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF12557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH04701.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="202" mass="22661" checksum="B837A111808D8A87" modified="2017-03-15" version="1">MSNADERHAMKMAKKKAARDKIMATKTDKKGLIIVHTGKGKGKSSAAFGMIFRCIAHDMKCAVVQFIKGGMSTGERDLILSKFQDTCAFHTMGEGFTWETQDKSRDIEMAQAAWAKAKELILDESNHMVLLDEINIAIRYDYIDIAEVVAFLKDQKPEMTHVVLTGRNAHEDLIEIADLVTEMELVKHPFRSGIKAQIGVEY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PYG3</accession>
    <name>A0A1M5PYG3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Peptidase inhibitor I78 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1898</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06303.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900684.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH06303">
        <property type="protein sequence ID" value="SHH06303"/>
        <property type="gene ID" value="SAMN05444003_1898"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021719">
        <property type="entry name" value="Prot_inh_I78"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11720">
        <property type="entry name" value="Inhibitor_I78"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012590093" evidence="1">
        <location>
            <begin position="19"/>
            <end position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH06303.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="87" mass="9190" checksum="668FC44AF7068EFA" modified="2017-03-15" version="1">MKRLAILLFCVACAPTTAILPPASEDTCNAAAHAGLIGQPDTDLERVLILGPVRVIRPDSVVTADFLAERINFVIDESGTITAIRCG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q0S7</accession>
    <name>A0A1M5Q0S7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Cation:H+ antiporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1968</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07618.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900740.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1968"/>
    <dbReference type="EnsemblBacteria" id="SHH07618">
        <property type="protein sequence ID" value="SHH07618"/>
        <property type="gene ID" value="SAMN05444003_1968"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1420.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004481">
        <property type="entry name" value="K/Na/Ca-exchanger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004837">
        <property type="entry name" value="NaCa_Exmemb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044880">
        <property type="entry name" value="NCX_ion-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10846">
        <property type="entry name" value="PTHR10846"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01699">
        <property type="entry name" value="Na_Ca_ex"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00367">
        <property type="entry name" value="TIGR00367"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="34"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="67"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="104"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="128"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="172"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="236"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="268"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="296"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="domain" description="Na_Ca_ex" evidence="6">
        <location>
            <begin position="4"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="domain" description="Na_Ca_ex" evidence="6">
        <location>
            <begin position="173"/>
            <end position="313"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH07618.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="314" mass="33292" checksum="58CC2C1C557F0AEF" modified="2017-03-15" version="1">MLDWIYVALGLVLLLLAGDSLVRGAVNMSLRVGIPALIVSLTIVAFGTSAPELLISIQSIYEGVPGLALGNVVGSNTANVLLVLGVPAMFAAMHTSDCDTKKSYVQMLAATALFMVICFLGPITWQDGFILLAALAAMLTWAAFEAKKHREAEPDDEEEIEGADPNLGWGKILFFLLLGIIGLPLGADLLVNGSTNIARGFGVSETVIGLTLVAVGTSLPELATTMSAAIRRQADVALGNVIGSNMFNLLGIMGVASLFGTIPVDDEILSFDIWIMLGASLLLIPFVFFKMDISRIWGVILSALYATYIFLVLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q334</accession>
    <name>A0A1M5Q334_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">VPLPA-CTERM protein sorting domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2011</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08392.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH08392">
        <property type="protein sequence ID" value="SHH08392"/>
        <property type="gene ID" value="SAMN05444003_2011"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022472">
        <property type="entry name" value="VPLPA-CTERM"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03370">
        <property type="entry name" value="VPLPA-CTERM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012680320" evidence="2">
        <location>
            <begin position="23"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="218"/>
            <end position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH08392.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="244" mass="25170" checksum="60D4672AFFA4BF0D" modified="2017-03-15" version="1">MKFKTILSGAFAVIVAATGASAATLDFTSDSINVASAIGSQDGVGYAITGSGGNLRDSTHWNNVGCAPGFECTQGDNGRYDVGFGITGRNNNEIDTTRQIAEYVSVDFTTGAVRLNSFAGMLTYERGSATSDRNPDSGEAVRLDYYLNGMLKGTLTAFPSFFVNENGGNFDTVGLASYALDGDGVLTDEVRFYASGFGSGGDDGSLNVTAAGLEVTAVPLPAGALLLLTGLGGMAVMRRKKSNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q7R5</accession>
    <name>A0A1M5Q7R5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Acetoin utilization deacetylase AcuC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2091</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the histone deacetylase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2091"/>
    <dbReference type="EnsemblBacteria" id="SHH09960">
        <property type="protein sequence ID" value="SHH09960"/>
        <property type="gene ID" value="SAMN05444003_2091"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.800.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000286">
        <property type="entry name" value="His_deacetylse"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023801">
        <property type="entry name" value="His_deacetylse_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037138">
        <property type="entry name" value="His_deacetylse_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023696">
        <property type="entry name" value="Ureohydrolase_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00850">
        <property type="entry name" value="Hist_deacetyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01270">
        <property type="entry name" value="HDASUPER"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52768">
        <property type="entry name" value="SSF52768"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="20"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="domain" description="Hist_deacetyl" evidence="3">
        <location>
            <begin position="52"/>
            <end position="334"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH09960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="340" mass="36090" checksum="B5F1150BE78B3EA1" modified="2017-03-15" version="1">MPATHDIFLPPAEVFSLKRVIVFLASIGLFGAMSTLLITHPDCYDHVTPPGHPEQVARLDAVLGSLAPLELETAKAPMAADDDLLRVHTVDHVAAIKEATPSEGWRSLDADTHMSAGSLAAAYRAAGGAVRAVDAVLSGEAGNAFVAMRPPGHHAEQETPMGFCFFGNVAIGAKHALDHHGLKRLAIVDFDVHHGNGTQALVEDDARILFCSSHQSPLWPGTGATHETGPHDTILNVPLPGGCGSVEFRAAMERDVLPRVDAFAPELLMISAGFDAHRADPLAGLNLVEDDFKWITEKLCDLADEHCQGRVVSALEGGYDLEALGASALAHVSVLKERSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QLN4</accession>
    <name>A0A1M5QLN4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2180</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14689.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901006.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2180"/>
    <dbReference type="EnsemblBacteria" id="SHH14689">
        <property type="protein sequence ID" value="SHH14689"/>
        <property type="gene ID" value="SAMN05444003_2180"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010293">
        <property type="entry name" value="Sbt_1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40400">
        <property type="entry name" value="PTHR40400"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05982">
        <property type="entry name" value="Sbt_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="43"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="68"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="102"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="135"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="166"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="197"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="231"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="263"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="294"/>
            <end position="318"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH14689.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="325" mass="32594" checksum="EFB3ED0B141337BB" modified="2017-03-15" version="1">MADIFSLAAGNLISPIILSFVLGVAAALARSDLTIPEAVAKGMSIYLLFAIGFKGGVGVAAHGVDAKLVGTLVAAGVLSFGLPFIAFGLLGFMTKLTTLDKAAVAAHYGSISIVTFVAATSVLETQGLVAEGYMVAAAAVMEAPAILSALWIVARKGGGASATKGLYREILLNGSIVLLVGSFFIGAITGQDGLNQIAPFIVAPFQGVLCLFLLDMGLVAGRGLRDSRGEVGGGAIAFGLLMPLVGSAFGLMAALAIGLSPGGAALLMTLSASASYIAVPAAMRVALPEAKPSIYLTLSLGVTFPFNLTVGIPLYTAISTTLAGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QPA5</accession>
    <name>A0A1M5QPA5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Double-strand break repair protein AddB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2242</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15952.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2242"/>
    <dbReference type="EnsemblBacteria" id="SHH15952">
        <property type="protein sequence ID" value="SHH15952"/>
        <property type="gene ID" value="SAMN05444003_2242"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014153">
        <property type="entry name" value="Ds_break_AddB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011604">
        <property type="entry name" value="PDDEXK-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038726">
        <property type="entry name" value="PDDEXK_AddAB-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12705">
        <property type="entry name" value="PDDEXK_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02786">
        <property type="entry name" value="addB_alphas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PDDEXK_1" evidence="2">
        <location>
            <begin position="712"/>
            <end position="886"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="687"/>
            <end position="710"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH15952.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="977" mass="108479" checksum="43BEA938FE522313" modified="2017-03-15" version="1">MSDRPKSKIYGLPLGTNVAEAFASGFHDFCEGLSPVQIAKSEVFVNTARMQRSLREAFDRGPDSLVPRIKLLTDISSDPLFSGAETAPNALQLKLEISRLISSLLDAAPDIAPKSSLFPLTDSLVSLLDEMAEEGVSFEDLKSLDITDQSGHWSRALDFLKIVEPILDQGQIAGALQQQAVERQIEHWADNPPDHPVIVLGSTGSRKTTRILMKAVAALPHGAVLLPGFDWAMPADVWPELGKDGSSIQEDHPQFRFWNFLQEMDLSVVDVEQWSSCPAQHSPLNDLISLSLRPAPVTDAWLEEGPKLGELTVATETLSLIEAPSPRVEAEAIAIRMRYALQEQKTVALISPDRNLTRQVAAALDRWDLVPDDSAGVPLTLTPPGRLLCQVMDLFLPPMTAEKLVTLLKHPIVHTGNMDRGQHLLRTRELELLLRRSGKVSVDVETLGDFAERRRNSDPEIVVWLGWLKKAVFDNTVSPNAPLEDYLRHHIAIAEYLSAGPDSSEMGELWLEAEGRSVEQAITSLTEAAQSSGAVSLRDYTNLVRGYLANETVRNHDEGRPDLLILGTLESRVQSADLVILGGLNDGVWPPAPNPDPWLNRQMRKDVGLLSPDRRIGLSAHDYQQALSSKEVVISRSVRTADSDTVPSRWVNRLANLLSGLPNNHGPKALDEMKERGNVWVQAAESQLSVTEQPNPTHRPSPQPPINHRPKQLSVTKIKTLIRDPYAIYAEALLRLRPLNQLSVRQEYQLRGVLFHKILQHFTEAGLTADAEDELLKIAEKVLLKGCPWPHVRLQWESRLKSIIPAFLTQEAKRQDQRTKGYTEVRGKLSSDLPDFTLVGIADRIDLTNDGLAAIYDYKTGSLPSKPQQRHFDKQLLLEAAMQERGAFERITATAVKEAKFLGIGSKVAAVDAPLDEVSADQVWADLLKLITNWNDQDRGYSARIAMFKKSDIGNYDHLSRFGEWSVSDDAKPEPVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QPK1</accession>
    <name>A0A1M5QPK1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">tRNA threonylcarbamoyladenosine biosynthesis protein TsaE</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaE</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2245</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the TsaE family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16014.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901116.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2245"/>
    <dbReference type="EnsemblBacteria" id="SHH16014">
        <property type="protein sequence ID" value="SHH16014"/>
        <property type="gene ID" value="SAMN05444003_2245"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002949">
        <property type="term" value="P:tRNA threonylcarbamoyladenosine modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003442">
        <property type="entry name" value="T6A_TsaE"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02367">
        <property type="entry name" value="TsaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00150">
        <property type="entry name" value="T6A_YjeE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007599"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00019010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00032441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH16014.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="154" mass="16945" checksum="4326E86978F2A8C9" modified="2017-03-15" version="1">MSSPIASFQSNSPEETEVLARQFVSIAKAGDVLLLEGNIGAGKSVFARTFIREAVGSNIDVPSPTFTLVQTYDSNIGEIWHCDLYRLTSPDEIVELGLDLAFANSITLIEWPDRLGEEVPFSALQVSFQVEGDTRSIRFFGDQSWAERLASLDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QR44</accession>
    <name>A0A1M5QR44_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">HemY protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2262</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16331.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901137.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2262"/>
    <dbReference type="EnsemblBacteria" id="SHH16331">
        <property type="protein sequence ID" value="SHH16331"/>
        <property type="gene ID" value="SAMN05444003_2262"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010817">
        <property type="entry name" value="HemY_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016982">
        <property type="entry name" value="Mms48"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001876">
        <property type="entry name" value="Znf_RanBP2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07219">
        <property type="entry name" value="HemY_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF031802">
        <property type="entry name" value="UCP031802"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01358">
        <property type="entry name" value="ZF_RANBP2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="47"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="domain" description="RanBP2-type" evidence="6">
        <location>
            <begin position="408"/>
            <end position="427"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS01358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH16331.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="485" mass="53338" checksum="432C288B72FC942C" modified="2017-03-15" version="1">MLWSLIKILLFIAVVIGLTYGATQLMEVSGGATVTMAGTELTLTPIQLAFGLAALVFLVWLGLKLLAFLVATFKFLNGDETAISRYFDRNRERRGYEALSEGMMALASGEGHLALTKAARAERYLNEPQLTTLLTAQAAEMTGDGKKAEQSYRQLLEDDKTRFVGVRGIMKQKLEEGDTDTAMALAQKAFALKPRHEETQDILLQLQAEKQDWTGARETLNAKLKSGSLPRDVHRRRDAIFALSSAKDVMDEGKDIEAREMAIEANRLSPDLIPAAVLAAEGYIENEKPKNAARILTKAWGVEPHPDLAAAFAKIEPEETAQARLKRFRALTKQKPDHPETKLLLAELNLSAEDFPAARKALGDLVETDPTARVLTIMAAIERGEGTDEPVVRDWLAKALSAPRSEQWICDNCQHINLAWTPTCSNCSSIDTLTWRRPPEGVAAMPTGTEMLPLLVDPVKPERGVVEVIEKVEVVTDIADGEKTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QRZ3</accession>
    <name>A0A1M5QRZ3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2292</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the polysaccharide synthase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16925.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2292"/>
    <dbReference type="EnsemblBacteria" id="SHH16925">
        <property type="protein sequence ID" value="SHH16925"/>
        <property type="gene ID" value="SAMN05444003_2292"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd05237">
        <property type="entry name" value="UDP_invert_4-6DH_SDR_e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003869">
        <property type="entry name" value="Polysac_CapD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02719">
        <property type="entry name" value="Polysacc_synt_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="27"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="64"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="94"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="121"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="domain" description="Polysacc_synt_2" evidence="3">
        <location>
            <begin position="296"/>
            <end position="587"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007430"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02719"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH16925.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="638" mass="69614" checksum="0C0A68BE4586FB5F" modified="2017-03-15" version="1">MATYAATVWVQNMFQYLASLPRGVKRAILLMIDCALVPISMYWAFSLRFGVQVETQQLQDSIPLFVLVLLASLPIFSLTKLNRIKLIAFEVQDIGRGVVAAMCLTVVAIVVSYLLRLDGPRSMPLIFGTVFLTLHILVRILARSLLMYISGRDSERVPVAIYGAGSAGVQLMAALRQDFEMRPVLFVDDNVTLQSMTIAGLPVYSAEKLAVMVRNKRVQRVLLAMPSATEGVRRQKIKELSKLDCEVYALPSYSELIGESGIVDKLQPVDADMLLARDKVDLDTPEIARTYAGRSILVTGAGGSIGSELCNQIIRCNPHRLVLFEHSEFALYSIERELAATAKQLGVELIARLGSVCDRMTVDEVLAESNVDIVLHAAAYKHVPLIETNEVVGTFNNVVGTQTVAEAAAAAEVERFILVSTDKAVRPTNVMGATKRLAELVVQDLQTRTPESKFAMVRFGNVLGSSGSVIPLFQKQIAEGGPITLTHDNISRYFMTIPEAARLVLLAGAYATGGDVFVLDMGKAVSIKELAKRMIELSGLTIKDDNNPNGQIEIEIVGLRPGEKMHEELLIGDNALPTPHEKILRAEEASVSQLEMARILKDLQKASETASANAIRGILEQYVEGFEAKPATTGSAPH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QVH4</accession>
    <name>A0A1M5QVH4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">GDP-L-fucose synthase</fullName>
            <ecNumber evidence="2">1.1.1.271</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">fcl</name>
        <name evidence="4" type="ORF">SAMN05444003_2318</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the two-step NADP-dependent conversion of GDP-4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>GDP-beta-L-fucose + NADP(+) = GDP-4-dehydro-alpha-D-rhamnose + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:18885"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57273"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:57964"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.1.1.271"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Nucleotide-sugar biosynthesis; GDP-L-fucose biosynthesis via de novo pathway; GDP-L-fucose from GDP-alpha-D-mannose: step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the NAD(P)-dependent epimerase/dehydratase family. Fucose synthase subfamily.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.271" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17533.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901229.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2318"/>
    <dbReference type="EnsemblBacteria" id="SHH17533">
        <property type="protein sequence ID" value="SHH17533"/>
        <property type="gene ID" value="SAMN05444003_2318"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00128">
        <property type="reaction ID" value="UER00191"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050577">
        <property type="term" value="F:GDP-L-fucose synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070401">
        <property type="term" value="F:NADP+ binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042351">
        <property type="term" value="P:'de novo' GDP-L-fucose biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd05239">
        <property type="entry name" value="GDP_FS_SDR_e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00956">
        <property type="entry name" value="GDP_fucose_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001509">
        <property type="entry name" value="Epimerase_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028614">
        <property type="entry name" value="GDP_fucose/colitose_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01370">
        <property type="entry name" value="Epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="2" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="2" id="KW-0521">NADP</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Epimerase" evidence="3">
        <location>
            <begin position="3"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="2">
        <location>
            <position position="132"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="7"/>
            <end position="13"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="101"/>
            <end position="104"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="136"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="159"/>
            <end position="162"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="175"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="183"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="198"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="205"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="274"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Important for catalytic activity" evidence="2">
        <location>
            <position position="103"/>
        </location>
    </feature>
    <feature type="site" description="Important for catalytic activity" evidence="2">
        <location>
            <position position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005959"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH17533.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="320" mass="34847" checksum="B2C8E0E872996BFE" modified="2017-03-15" version="1">MRVYVAGHRGMVGRAIAAGLAARGDEVIARTHAELDLTDQAAVAAFMQDQKPDAVVLAAARVGGIQANNSYPGQFIYENLMIQSNVIHQAHKAGVQQLLFLGSSCIYPRLADQPMREDALLTGTLEPTNEPYAIAKIAGIKMCESYNREYSRDYRSVMPTNLYGPHDNFDLETSHVLPALIRRFHEAKVAGAPEVVIWGTGTPRREFLHVEDMAAASLHVMGLRAEDYARATDPMLSHINVGTGADVSISELAQMIAGVVGYEGAITQDTTKPDGTPRKLMDVSRLGSLGWQASIGLGQGLQDTYRWFLDHQDSFKGHAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QWS0</accession>
    <name>A0A1M5QWS0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator, TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2275</name>
        <name evidence="4" type="ORF">SAMN05444003_2371</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16577.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18617.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901156.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH16577">
        <property type="protein sequence ID" value="SHH16577"/>
        <property type="gene ID" value="SAMN05444003_2275"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH18617">
        <property type="protein sequence ID" value="SHH18617"/>
        <property type="gene ID" value="SAMN05444003_2371"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="6"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="28"/>
            <end position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH16577.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH18617.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="195" mass="21719" checksum="791601E58301DF35" modified="2017-03-15" version="1">MSRDSSDTRTRILDCTWNLLESGDKKVRMSDIAKEVGISRQALYLHFPTRAELLIATTRHIDSVKNVDARLADSRAATSGRDRLASFIGAWGGYIPEIHGLSVALRSMRDSDAEAAAAWDDRMQAVRHGCAAAVAALAADKMLRPDLNIEVATDLLWTLLSVENWERLVRECGWSQVEYENQIKRLSEAALLAKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R0K8</accession>
    <name>A0A1M5R0K8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Lipid A oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2426</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19681.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901522.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2426"/>
    <dbReference type="EnsemblBacteria" id="SHH19681">
        <property type="protein sequence ID" value="SHH19681"/>
        <property type="gene ID" value="SAMN05444003_2426"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011250">
        <property type="entry name" value="OMP/PagP_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027385">
        <property type="entry name" value="OMP_b-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13505">
        <property type="entry name" value="OMP_b-brl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56925">
        <property type="entry name" value="SSF56925"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009913330" evidence="1">
        <location>
            <begin position="22"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="domain" description="OMP_b-brl" evidence="2">
        <location>
            <begin position="9"/>
            <end position="216"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH19681.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="216" mass="23601" checksum="4B44628964D157ED" modified="2017-03-15" version="1">MNRFTIISLAAALSLPSAVLAEVELSFYTGAQNAPHSDVFFDGDSEIADGKIFIGWEGRSFEAPPYYGLRATIWNSPTFGYGVEFTHNKIYPQEGELPPEFQRLEFTDGLNTLTVNAYRRWQNGYGDFTPYIGGGVGLSIPHVEVITDTSRTEGYQITGPAATWIAGASYPITDEWSVFGEYKGTYSINTGELDTGGTVETNVITNALNVGVSFSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RB48</accession>
    <name>A0A1M5RB48_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2487</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23554.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2487"/>
    <dbReference type="EnsemblBacteria" id="SHH23554">
        <property type="protein sequence ID" value="SHH23554"/>
        <property type="gene ID" value="SAMN05444003_2487"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018666">
        <property type="entry name" value="DUF2125"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09898">
        <property type="entry name" value="DUF2125"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012590112" evidence="1">
        <location>
            <begin position="25"/>
            <end position="499"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH23554.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="499" mass="52426" checksum="209B228C38A8C36F" modified="2017-03-15" version="1">MTHFKALKASVCMAALLTGSAAVADVTAAEVWADWQEQFTLYGEGGVTIGSETESDGTVSISDLTFSMDDGQSSVTGTLDSIELVEQGDGTVLITMSENFPFVITDEFGTTVNMSIVQNGFQMVASGDPDAINYAVTADQYGVQIDQIEDNGEVIEGDMRFVANGLAGNYSTTSGDINNITYDLSATALDILVDVTDPETGGKFLMSGKIDGLGAQADLAIPTDIDLENPEDIFAKGLEMAGSYNYDGTTLLFDVQDGPDSANGTVGTGPGEVTFSVDEEALSYGVAASDIAVSVTSPDFPFPINVSLGGYGVGLQMPLGETEEPADFGLQFNITDLAVNDEIWMLADPTNSLSHDPVTVSVDVTGEAKLFFDLTDPEQAEAMAMGAVPGEIYSLNLNDLTLSAAGALLTGEGAFTFDNSDLSTIPGVPRPEGSVTVNLKGANQLIDTLVAMGYLPEDQAMMGRMMMGMFARTVGEDELTSTIEVNEQGHILANGQRIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RDQ4</accession>
    <name>A0A1M5RDQ4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Bifunctional purine biosynthesis protein PurH</fullName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName evidence="8">Phosphoribosylaminoimidazolecarboxamide formyltransferase</fullName>
                <ecNumber evidence="8">2.1.2.3</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="8">AICAR transformylase</fullName>
            </alternativeName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="8">IMP cyclohydrolase</fullName>
                <ecNumber evidence="8">3.5.4.10</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="8">ATIC</fullName>
            </alternativeName>
            <alternativeName>
                <fullName evidence="8">IMP synthase</fullName>
            </alternativeName>
            <alternativeName>
                <fullName evidence="8">Inosinicase</fullName>
            </alternativeName>
        </domain>
    </protein>
    <gene>
        <name evidence="8" type="primary">purH</name>
        <name evidence="10" type="ORF">SAMN05444003_2526</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>(6S)-10-formyltetrahydrofolate + 5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide = (6S)-5,6,7,8-tetrahydrofolate + 5-formamido-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide</text>
            <dbReference type="Rhea" id="RHEA:22192"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="ChEBI" id="CHEBI:57454"/>
            <dbReference type="ChEBI" id="CHEBI:58467"/>
            <dbReference type="ChEBI" id="CHEBI:58475"/>
            <dbReference type="EC" id="2.1.2.3"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>H2O + IMP = 5-formamido-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide</text>
            <dbReference type="Rhea" id="RHEA:18445"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <dbReference type="ChEBI" id="CHEBI:58467"/>
            <dbReference type="EC" id="3.5.4.10"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Purine metabolism; IMP biosynthesis via de novo pathway; 5-formamido-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide (10-formyl THF route): step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 8">Purine metabolism; IMP biosynthesis via de novo pathway; IMP from 5-formamido-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide: step 1/1.</text>
    </comment>
    <comment type="domain">
        <text evidence="8">The IMP cyclohydrolase activity resides in the N-terminal region.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the PurH family.</text>
    </comment>
    <dbReference type="EC" id="2.1.2.3" evidence="8"/>
    <dbReference type="EC" id="3.5.4.10" evidence="8"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24328.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901624.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2526"/>
    <dbReference type="EnsemblBacteria" id="SHH24328">
        <property type="protein sequence ID" value="SHH24328"/>
        <property type="gene ID" value="SAMN05444003_2526"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00133"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003937">
        <property type="term" value="F:IMP cyclohydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004643">
        <property type="term" value="F:phosphoribosylaminoimidazolecarboxamide formyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.140.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1380">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00139">
        <property type="entry name" value="PurH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024051">
        <property type="entry name" value="AICAR_Tfase_dup_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016193">
        <property type="entry name" value="Cytidine_deaminase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011607">
        <property type="entry name" value="MGS-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036914">
        <property type="entry name" value="MGS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002695">
        <property type="entry name" value="PurH-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11692">
        <property type="entry name" value="PTHR11692"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01808">
        <property type="entry name" value="AICARFT_IMPCHas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02142">
        <property type="entry name" value="MGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000414">
        <property type="entry name" value="AICARFT_IMPCHas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00798">
        <property type="entry name" value="AICARFT_IMPCHas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00851">
        <property type="entry name" value="MGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52335">
        <property type="entry name" value="SSF52335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53927">
        <property type="entry name" value="SSF53927"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00355">
        <property type="entry name" value="purH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51855">
        <property type="entry name" value="MGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8 10" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7 8" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="5 8" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="MGS-like" evidence="9">
        <location>
            <begin position="2"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004844"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007667"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51855"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH24328.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="529" mass="55894" checksum="A9C45998B2365BC4" modified="2017-03-15" version="1">MTDLHPVRRALISVSDKTGMIDLAKALAGHGVELLSTGGSAQAMRDAGLDVKDVAEVTGFPEMMDGRVKTLHPVVHGGLLARRDNDGHVAAMEEHGIGEIDLLVVNLYPFEETVAKGADFDTCIENIDIGGPAMIRSAAKNHAFVNVVTDVEDYADLLAELDANGGQTTLALRQRLAQTAYARTAAYDTAVSTWMAGAIGADAPRRRSFAGSIAQTLRYGENPHQTASFYTDGTGRPGVATAVQHQGKELSYNNINDTDAAFELVAEFDPADSPAVAIIKHANPCGVAKGVTLLEAYRNAFDCDRTSAFGGIIAMNVPLDEETAKEITGIFTEVVIAPGASDAAKAVFAAKKNLRLLTTEGLPNTREGGLTYRQVAGGMLVQDNDNGYVGMDDLKVVTKVKPTAEQMDDLLFAWKVAKHVKSNAIVYVKDKATVGVGAGQMSRLDSALIAAKKAERMAEAMDLPEPLTKGSAVASDAFFPFADGLLEAAAAGATCVIQPGGSMRDDEVIAAADEAGIAMVFTGMRHFRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RE00</accession>
    <name>A0A1M5RE00_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2537</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24582.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901643.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2537"/>
    <dbReference type="EnsemblBacteria" id="SHH24582">
        <property type="protein sequence ID" value="SHH24582"/>
        <property type="gene ID" value="SAMN05444003_2537"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010775">
        <property type="entry name" value="DUF1365"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33973">
        <property type="entry name" value="PTHR33973"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07103">
        <property type="entry name" value="DUF1365"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH24582.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="250" mass="28001" checksum="691920C230BFFC34" modified="2017-03-15" version="1">MNAVEHISGETYHGRRGAVKNAFRYSIDYVLLDAEALVKAPTLFARNKASLMSLQDSDHGGPPKEGKGAQWVRDVLSAHGIHLDGRIELLAQPRVLGHVFNPVSFWLCYDGYALKAVIAEVTNTFGDRHSYLCAHDDLREITKDETLQAQKLMHVSPFQPIEGGYTFRFDIKATDILIHIDYSRGNGGLVATLKGPRKPLTNRSILEAVVRRPFGSRRVLTLIHWQALKLWFKGATFRSQPVAPSEEVSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RE17</accession>
    <name>A0A1M5RE17_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2512</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24053.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901605.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH24053">
        <property type="protein sequence ID" value="SHH24053"/>
        <property type="gene ID" value="SAMN05444003_2512"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH24053.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="160" mass="17066" checksum="678DD5B018994110" modified="2017-03-15" version="1">MSDSFVRRLGRTLGQLALALLNATLLLIVAALVLSWLLADKVEDVAETTIAAATEQVERLTPVTDQATSLRGQLAELRADVAKLENLDGSEATASAQAILAKLDDLEGSISEMNATLEPFVEQITAEPSTLVDRAVETGFAEAGTWIATLRDCRLVEDDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RFC5</accession>
    <name>A0A1M5RFC5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">RNA pyrophosphohydrolase</fullName>
            <ecNumber evidence="3">3.6.1.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">(Di)nucleoside polyphosphate hydrolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rppH</name>
        <name evidence="3" type="synonym">nudH</name>
        <name evidence="6" type="ORF">SAMN05444003_2560</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the Nudix hydrolase family. RppH subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.-" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25035.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2560"/>
    <dbReference type="EnsemblBacteria" id="SHH25035">
        <property type="protein sequence ID" value="SHH25035"/>
        <property type="gene ID" value="SAMN05444003_2560"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016462">
        <property type="term" value="F:pyrophosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd03671">
        <property type="entry name" value="Ap4A_hydrolase_plant_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00298">
        <property type="entry name" value="Nudix_RppH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020476">
        <property type="entry name" value="Nudix_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020084">
        <property type="entry name" value="NUDIX_hydrolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022927">
        <property type="entry name" value="RppH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00502">
        <property type="entry name" value="NUDIXFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00893">
        <property type="entry name" value="NUDIX_BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="5">
        <location>
            <begin position="17"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Nudix box" evidence="3">
        <location>
            <begin position="51"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00298"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003476"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH25035.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="167" mass="19443" checksum="E501F2D380828269" modified="2017-03-15" version="1">MNQQGPFMTPEQIAELPYRPCVGIMLTNPRGHIFVGQRNDRDTDAWQMPQGGVDKGENTLDAAYRELWEETGVTKKLVTLEAESSRLIPYDLPHHIVPTIWKGRYRGQEQKWFLFRFHGADTDINIETEHPEFTQWKWMPKEDLVANIVPFKRAVYEEVLAEFGAKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RFF3</accession>
    <name>A0A1M5RFF3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">tRNA 2-selenouridine synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2551</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24860.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901664.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2551"/>
    <dbReference type="EnsemblBacteria" id="SHH24860">
        <property type="protein sequence ID" value="SHH24860"/>
        <property type="gene ID" value="SAMN05444003_2551"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004792">
        <property type="term" value="F:thiosulfate sulfurtransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043828">
        <property type="term" value="F:tRNA 2-selenouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002098">
        <property type="term" value="P:tRNA wobble uridine modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.250.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001763">
        <property type="entry name" value="Rhodanese-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036873">
        <property type="entry name" value="Rhodanese-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017582">
        <property type="entry name" value="SelU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001307">
        <property type="entry name" value="Thiosulphate_STrfase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00581">
        <property type="entry name" value="Rhodanese"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00450">
        <property type="entry name" value="RHOD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52821">
        <property type="entry name" value="SSF52821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03167">
        <property type="entry name" value="tRNA_sel_U_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00380">
        <property type="entry name" value="RHODANESE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50206">
        <property type="entry name" value="RHODANESE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0711">Selenium</keyword>
    <feature type="domain" description="Rhodanese" evidence="2">
        <location>
            <begin position="18"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH24860.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="350" mass="38589" checksum="21DEF2EA682B8A2E" modified="2017-03-15" version="1">MALNFSELSEFYTHGFDTVIDVRSPAEFAIDHIPGAINLPSLSNEERAEVGTIYKQVSPFKARKVGASLVLSNVARHVSGPLQHHDGSWRPLIYCWRGGQRSGVFTTLLKEIGWRAEVVDGGYQTYRRLVQHLLYEETLPHRFILLDGYTGTAKTAVLNALKPLGVQTIDLEAMAGHRGSLLGEMPGGQPSQRMFESRLAQALYHCDPSQPVVLEAESSKIGRLIIPPSLWSAMAQAPGIKITASLAARVAFITEDYRDILADPDTVTKRLAPLRHLRGHANVDRWQGLQDSGDLSGLAQALIEDHYDPAYATAQKKHEREVLGEVHSETLDQTGVETTAKKVAEIVRSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RGU0</accession>
    <name>A0A1M5RGU0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Predicted dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2578</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25408.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901701.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2578"/>
    <dbReference type="EnsemblBacteria" id="SHH25408">
        <property type="protein sequence ID" value="SHH25408"/>
        <property type="gene ID" value="SAMN05444003_2578"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004104">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000683">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01408">
        <property type="entry name" value="GFO_IDH_MocA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02894">
        <property type="entry name" value="GFO_IDH_MocA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GFO_IDH_MocA" evidence="1">
        <location>
            <begin position="5"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="domain" description="GFO_IDH_MocA_C" evidence="2">
        <location>
            <begin position="135"/>
            <end position="352"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH25408.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="374" mass="40153" checksum="DAE1A4290C2311C7" modified="2017-03-15" version="1">MKKLGVGIIGCGNISAAYLRLGSMFKALDMRAVADLNMDAANARAEEFGVRAETVEGLLAADDIDVIVNLTIPVAHYSVTKQILAAGKHAYTEKPIVLTLEEGEDLRRIASEKGLRIGAAPDTFLGGAHQQARAIIDAGDIGKVIGGTCHVMGHGMESWHPNPDFFYQPGAGPVLDIGPYYVTNLIQLLGPVKSAVSLATTTFSERTIGNGDRLGEKVEVNTPTNIHALLEFANGATITLGTSWDVWAHRHANMELYGETGSLFVPDPNFFGGALEKSGESSDIEEVDAWDHPFGVPNEGDRANYRCAGLADMAAAIEEGRPHRCGIDLAVHAVDVMTAILRAGEERRFVELTTTCERPEPLSPQQAKDLLQQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RJH0</accession>
    <name>A0A1M5RJH0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 11">Pyruvate kinase</fullName>
            <ecNumber evidence="3 11">2.7.1.40</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">SAMN05444003_2625</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>ATP + pyruvate = ADP + H(+) + phosphoenolpyruvate</text>
            <dbReference type="Rhea" id="RHEA:18157"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.40"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 11">Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 5/5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the pyruvate kinase family.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.40" evidence="3 11"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26425.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901777.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2625"/>
    <dbReference type="EnsemblBacteria" id="SHH26425">
        <property type="protein sequence ID" value="SHH26425"/>
        <property type="gene ID" value="SAMN05444003_2625"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00188"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030955">
        <property type="term" value="F:potassium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004743">
        <property type="term" value="F:pyruvate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.33.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1380.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001697">
        <property type="entry name" value="Pyr_Knase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_Kinase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040442">
        <property type="entry name" value="Pyrv_Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011037">
        <property type="entry name" value="Pyrv_Knase-like_insert_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015793">
        <property type="entry name" value="Pyrv_Knase_brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015795">
        <property type="entry name" value="Pyrv_Knase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036918">
        <property type="entry name" value="Pyrv_Knase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015806">
        <property type="entry name" value="Pyrv_Knase_insert_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11817">
        <property type="entry name" value="PTHR11817"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00224">
        <property type="entry name" value="PK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02887">
        <property type="entry name" value="PK_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01050">
        <property type="entry name" value="PYRUVTKNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50800">
        <property type="entry name" value="SSF50800"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="SSF51621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52935">
        <property type="entry name" value="SSF52935"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01064">
        <property type="entry name" value="pyruv_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9 11" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="6 11 14" id="KW-0418">Kinase</keyword>
    <keyword evidence="8 11" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10 14" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PK" evidence="12">
        <location>
            <begin position="5"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="domain" description="PK_C" evidence="13">
        <location>
            <begin position="357"/>
            <end position="467"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004997"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008663"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012142"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023317"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU000504"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF00224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF02887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="SHH26425.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="481" mass="51668" checksum="31D3F7D68B3A6052" modified="2017-03-15" version="1">MKRDRNVKIVATLGPASNDYKMIRALHEAGADVFRLNMSHGDHAEIKVRHEIIRKVEEDLKSPIAILADLQGPKLRVGKFANDAEELVEGASFRLDLDEADGDVNRVCLPHKEIFDALEPGAHLLVNDGKIKLRVKDCGATFADCEVVVGGTISNRKGVNVPDVVLPLAALSEKDRKDLEFVCELGVDWLALSFVQRPADVEEARKLAKGRAAILSKIEKPAAVKAFDDILEASDGIMVARGDLGVELPVQNVPPIQKQLVRKCRTAAKPVIVATQMLESMIESPMPTRAEVSDVATAIYEGTDAIMLSAESAAGSYPIEAVTTMNNVAMEVESDPTYTNIIEASRTAERTSVADGIVAAAREIAETTDIKAICCFSQSGTTAALVSRERPRVPIVALTSYVGTARKLCLSWGCNCAVVGSVARFKDAVIAAVRASQEQGMVTNADKVVVTAGVPFNTPGSTNILRVAPCDEKLIYPSDPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RJP5</accession>
    <name>A0A1M5RJP5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">4-methylaminobutanoate oxidase (Formaldehyde-forming)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2607</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GcvT family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26013.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901748.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH26013">
        <property type="protein sequence ID" value="SHH26013"/>
        <property type="gene ID" value="SAMN05444003_2607"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032503">
        <property type="entry name" value="FAO_M"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013977">
        <property type="entry name" value="GCV_T_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006222">
        <property type="entry name" value="GCV_T_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029043">
        <property type="entry name" value="GcvT/YgfZ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027266">
        <property type="entry name" value="TrmE/GcvT_dom1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16350">
        <property type="entry name" value="FAO_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01571">
        <property type="entry name" value="GCV_T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08669">
        <property type="entry name" value="GCV_T_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101790">
        <property type="entry name" value="SSF101790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAO" evidence="2">
        <location>
            <begin position="9"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="domain" description="FAO_M" evidence="5">
        <location>
            <begin position="372"/>
            <end position="425"/>
        </location>
    </feature>
    <feature type="domain" description="GCV_T" evidence="3">
        <location>
            <begin position="429"/>
            <end position="699"/>
        </location>
    </feature>
    <feature type="domain" description="GCV_T_C" evidence="4">
        <location>
            <begin position="724"/>
            <end position="806"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF08669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF16350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH26013.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="814" mass="89132" checksum="8EE969B676D44B1E" modified="2017-03-15" version="1">MALPPSQARVVIIGGGVIGCSVAYHLAKLGWKDVVLLERKQLTSGTTWHAAGLIAQLRATANMTKLAKYSQELYGNLEAETGVATGFKRCGSITAALTEERKEEIFRQAAMARAFGVEAEEISPEEVKARYEHLNIDGVTGGVYLPLDGQGDPANIALAMAKGARQNGAQVIERTLVTGVKKEGRRITGVDWEQGGESGHITCEMVVNCGGMWGHQVGKMLGTNVPLHACEHFYIVTEAIEGLTQMPVLRVPDECAYYKEDAGKMLLGAFEPNAKPWAMDGIPKDFEFDQLPEDFDHFEPILEAACERMPMLAEAGIHTFFNGPESFTPDDAYHLGLAPEMDNVWVAAGFNSIGIQSAGGAGSALASWMDTGEKPFDLGDVDISRMQPFQGNKHYLFERSKETLGLLYADHFPYLQKNTARGVRRTPFHQHLLDNGAVMGELAGWERANWFANEGQKPEYEYSWKRQNFFGNVAAEVEAIRTNVGMYDMSSFGKIRVEGRDATAFMNYIGGGQYDVPVGKIVYTQFLNKTAGIEADVTVTRLSETAYFVVTPAATRLADQTWMQRHVGDFNVVITDVTAGEGVLAVMGPNARKLLETVSPNDFSNDANPFGTAQEIELGMGLARVHRVTYVGELGWEVYVSSDMAAHAFETLHAAGRDMGLMLCGMHMMDAARMEKGFRHFGHDITAEDHVLEAGLGFAVKTDKADFIGRDAVLAKKESGLENRLVQFKLTDPEPLLYHNEPVVRDGEIVGYLSSGGYGHHLGAALGMGYVPCKGETAKEMLESTFEIDVMGTRVKAEAQLKPFYDPTSERVKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RKP1</accession>
    <name>A0A1M5RKP1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7">DNA repair protein RecO</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6 7">Recombination protein O</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">recO</name>
        <name evidence="9" type="ORF">SAMN05444003_2643</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Involved in DNA repair and RecF pathway recombination.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the RecO family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2643"/>
    <dbReference type="EnsemblBacteria" id="SHH26834">
        <property type="protein sequence ID" value="SHH26834"/>
        <property type="gene ID" value="SAMN05444003_2643"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1440.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00201">
        <property type="entry name" value="RecO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037278">
        <property type="entry name" value="ARFGAP/RecO"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022572">
        <property type="entry name" value="DNA_rep/recomb_RecO_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003717">
        <property type="entry name" value="RecO"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042242">
        <property type="entry name" value="RecO_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33991">
        <property type="entry name" value="PTHR33991"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02565">
        <property type="entry name" value="RecO_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11967">
        <property type="entry name" value="RecO_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57863">
        <property type="entry name" value="SSF57863"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00613">
        <property type="entry name" value="reco"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 7" id="KW-0227">DNA damage</keyword>
    <keyword evidence="4 7" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="5 7" id="KW-0234">DNA repair</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA_rep/recomb_RecO_N" evidence="8">
        <location>
            <begin position="1"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00033409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF11967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH26834.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="241" mass="25943" checksum="85C9BB883441E2D3" modified="2017-03-15" version="1">MIQWRDEGILLSVKPFGENSVIAEVFTENQGRYAGVIRGGTSRKLAPMLQPGAQLQADWKARLSEHLGSLTVELLRSRTAQAMSGRLALAGLNAVCGLLSVVLPEREPHSDLYVQTERLLDLLPNAEVWPLAYVQWEIQVLSDLGFALDLSSCAVTGATEGLSFISPKTGRAVSTDGAGEWADRLLPLPAVLKGEGEAEAEDILQALDVTGYFIEHKVLAGLGGAKMPAARMRLIDALKRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RKS2</accession>
    <name>A0A1M5RKS2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 6">Signal peptidase I</fullName>
            <ecNumber evidence="3 6">3.4.21.89</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_2639</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>Cleavage of hydrophobic, N-terminal signal or leader sequences from secreted and periplasmic proteins.</text>
            <dbReference type="EC" id="3.4.21.89"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Membrane</location>
            <topology evidence="6">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the peptidase S26 family.</text>
    </comment>
    <dbReference type="EC" id="3.4.21.89" evidence="3 6"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26739.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901799.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2639"/>
    <dbReference type="EnsemblBacteria" id="SHH26739">
        <property type="protein sequence ID" value="SHH26739"/>
        <property type="gene ID" value="SAMN05444003_2639"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006465">
        <property type="term" value="P:signal peptide processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06530">
        <property type="entry name" value="S26_SPase_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036286">
        <property type="entry name" value="LexA/Signal_pep-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000223">
        <property type="entry name" value="Pept_S26A_signal_pept_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019758">
        <property type="entry name" value="Pept_S26A_signal_pept_1_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019757">
        <property type="entry name" value="Pept_S26A_signal_pept_1_Lys-AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019533">
        <property type="entry name" value="Peptidase_S26"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43390">
        <property type="entry name" value="PTHR43390"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10502">
        <property type="entry name" value="Peptidase_S26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00727">
        <property type="entry name" value="LEADERPTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51306">
        <property type="entry name" value="SSF51306"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02227">
        <property type="entry name" value="sigpep_I_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00760">
        <property type="entry name" value="SPASE_I_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00761">
        <property type="entry name" value="SPASE_I_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0645">Protease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_S26" evidence="7">
        <location>
            <begin position="12"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="active site" evidence="5">
        <location>
            <position position="42"/>
        </location>
    </feature>
    <feature type="active site" evidence="5">
        <location>
            <position position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013208"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00019232"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR600223-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU362042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF10502"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH26739.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="274" mass="30308" checksum="7248C33D9A54E75B" modified="2017-03-15" version="1">MSESNGFLGGIVETIKTVVWALLIAGVFRTIFFQPFWIPSGSMKDTLLIGDFLFVNKMAYGYSYASCPSIPFLGIGADDFCGFLEGDNERLFGSDPERGDVAVFRHPVTGVDFIKRVIGLPGDRIQMVDGLLYINDEPVEVEQVEDFVEPWTRQGPQGIPPRCSNGAVGEGAACVKERFIETLPNGRAHSILNITDSSGDNTGVFTVPEGHFFFMGDNRDNSTDSRVPQAARGVGFVPREDLVGRADRIMFSSAGRSMFAFWTWRSDRYFKAIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RUX5</accession>
    <name>A0A1M5RUX5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2708</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30054.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901961.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH30054">
        <property type="protein sequence ID" value="SHH30054"/>
        <property type="gene ID" value="SAMN05444003_2708"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013573">
        <property type="entry name" value="Tscrpt_reg_YcdC_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08362">
        <property type="entry name" value="TetR_C_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="13"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="36"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH30054.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="207" mass="24029" checksum="A011936A76C9715B" modified="2017-03-15" version="1">MTSKPANLTRIQSERRDEILSSALEIFSKNGYKGASINKIAQAANMSTPRLLYHFSDKEKLYSDLLSSTLSLWIDPLEFIGQTDDAVEEICNYVRRKIEMSRDYPRESRLFASEILIGIERADDSLFDPLHQIFRDKIELIQRWSNEGKIAPVDPYHLIYSIWATTQHYADFDVQIRTLSPQKMENLFDDAEAFLIPMYTKLLTPSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S0B7</accession>
    <name>A0A1M5S0B7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF58 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2788</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31851.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902077.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2788"/>
    <dbReference type="EnsemblBacteria" id="SHH31851">
        <property type="protein sequence ID" value="SHH31851"/>
        <property type="gene ID" value="SAMN05444003_2788"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002881">
        <property type="entry name" value="DUF58"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01882">
        <property type="entry name" value="DUF58"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF58" evidence="1">
        <location>
            <begin position="47"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH31851.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="290" mass="32205" checksum="8431FB25EEAD4C42" modified="2017-03-15" version="1">MSQPLALRSEAEALAAPMPALLAQAEHLASTVILGEHGRRRAGVGDTFWQYRPAQASDTARSIDWRRSARSDAAFVQDKEWQIAQSVLFWVDQSASMRFQSDANIQSKSTAARVIALAAAILLLQGGERVGLTGLRLPPKRGEAQIRQMAEQLAEDAEVDYGSPEAQGMLPHSRAVFVSDFLGDMAPIEGALMRAADRGVSGALLQILDPQEEAFPFDGRTVFESMGGTLRHETLKAGDLKTRYEDRLRERKDRLDHLAKVTGWQFRTHHTDRPATSALLWLYQAMERRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S494</accession>
    <name>A0A1M5S494_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2847</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33299.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902168.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2847"/>
    <dbReference type="EnsemblBacteria" id="SHH33299">
        <property type="protein sequence ID" value="SHH33299"/>
        <property type="gene ID" value="SAMN05444003_2847"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd05018">
        <property type="entry name" value="CoxG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010419">
        <property type="entry name" value="CO_DH_gsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38588">
        <property type="entry name" value="PTHR38588"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06240">
        <property type="entry name" value="COXG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH33299.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="150" mass="15616" checksum="9AD8EBA7BC01162F" modified="2017-03-15" version="1">MELNDEIIINASKERVYEALNDPEILKQCIPGCEELIKHSDTELEAIVVLKIGPVKAKFGGNVVLDQSGAPDAFSLSGQGSGGAAGHAKGGADVTLTADGDSTILKYAAKAEIGGKLAQLGSRLIQSTSKKLAAKFFKSFADILNEDVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SCW9</accession>
    <name>A0A1M5SCW9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glutamate-1-semialdehyde 2,1-aminomutase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2903</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36356.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902288.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2903"/>
    <dbReference type="EnsemblBacteria" id="SHH36356">
        <property type="protein sequence ID" value="SHH36356"/>
        <property type="gene ID" value="SAMN05444003_2903"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00610">
        <property type="entry name" value="OAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005814">
        <property type="entry name" value="Aminotrans_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00202">
        <property type="entry name" value="Aminotran_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH36356.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="423" mass="45713" checksum="F5462C568146A335" modified="2017-03-15" version="1">MNKLHSQSDWIARAQKVLPAAGFGNFDPGIIISHGEGSRVWDENGDEYVDYLIGSGPMLLGHGHPEVIEAVLEQLPKGMTFFANNAKGIELAEAICDAVPCCEQVRFLTAGGEADMYAMRLARAFTGKPKILKFEGGYHGMSAEAQMSLAPSVQVNFPKAVPDSAGIPQDVADNMLIAPFNDLAAVESLLSEHQDVAAIIVEPLQRIIPPQSGYLQGLRDLCTKHSVLLIFDEVVTGFRLEYGGAQERYGVTPDLCALGKIIGGGFPLAAVGGKEEIMRHFDKSEVGADLWLMQLGTLAGNPIASVAGLKTMEILRREGAYETLKQYGARLQKMQSDALAKSGIPHKICGDETLFDLYFTSNEPLDYRSAKHDDPSVNTRYNDVLRQNGVFKSPGKLYPSLALTEADFELTEAAVAKAVAAIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SGK9</accession>
    <name>A0A1M5SGK9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Transport permease protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_2962</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell inner membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the ABC-2 integral membrane protein family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37727.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2962"/>
    <dbReference type="EnsemblBacteria" id="SHH37727">
        <property type="protein sequence ID" value="SHH37727"/>
        <property type="gene ID" value="SAMN05444003_2962"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013525">
        <property type="entry name" value="ABC_2_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000412">
        <property type="entry name" value="ABC_2_transport"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01061">
        <property type="entry name" value="ABC2_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006648">
        <property type="entry name" value="DrrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00164">
        <property type="entry name" value="ABC2TRNSPORT"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51012">
        <property type="entry name" value="ABC_TM2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="38"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="68"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="116"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="150"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="182"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="237"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="domain" description="ABC2_membrane" evidence="7">
        <location>
            <begin position="20"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00442"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU361157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH37727.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="266" mass="28707" checksum="94FE24B4A6F3D182" modified="2017-03-15" version="1">MSQQSMGVRRFGRVNWIGVATLIEREVKRFMNVWSQTIMAPLINAGLLLMIFTIAIGPTRGEVMGVPFMTFLVPGILTMTVIQNAFANTSSSITSAKIGGNIVDTLMPPLNAAELLVGYVTGAVIRGVMCAIVIALGGWIFLGVTIENPLWVAAFVLLGTIMMGGLGLIAGVYAQKFDQLSAIQNFLVTPLAFLSGTFYSIEALPPALNTLCHFNPFFYIIDGVRFGMIGVSDSSPWVGLVVVLAATAAVLWLNLRWLRSGYRLKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SH40</accession>
    <name>A0A1M5SH40_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">ATP-dependent helicase HrpB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2966</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37809.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902393.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2966"/>
    <dbReference type="EnsemblBacteria" id="SHH37809">
        <property type="protein sequence ID" value="SHH37809"/>
        <property type="gene ID" value="SAMN05444003_2966"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007502">
        <property type="entry name" value="Helicase-assoc_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010225">
        <property type="entry name" value="HrpB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013689">
        <property type="entry name" value="RNA_helicase_ATP-dep_HrpB_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04408">
        <property type="entry name" value="HA2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08482">
        <property type="entry name" value="HrpB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005496">
        <property type="entry name" value="ATP_hel_hrpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00847">
        <property type="entry name" value="HA2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01970">
        <property type="entry name" value="DEAH_box_HrpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0347">Helicase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="2">
        <location>
            <begin position="14"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="3">
        <location>
            <begin position="206"/>
            <end position="369"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="770"/>
            <end position="796"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH37809.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="796" mass="87211" checksum="E29EDF6B5F84A2DE" modified="2017-03-15" version="1">MSGLPIEDVLPQVVAALRDAGRAVLQAPPGAGKTTRVPLALLDAGLTDKKIIMLEPRRLAARAAAERLAEQLDERVGETVGYRMRGDSVAGRRIEVVTEGILTRMVQSDPSLDGVGVVIFDEFHERSLNADLGLALVWEVRQALREDLAVLVMSATLDAGPVAELLEGAPAVTSEGRAFDVDVRWLDRPVGKLGGWRDFVWRSVDLVERALEESAGGVLVFLPGAGEIRAVQDQLRASKDCEVLPLYGAMPFAEQRRAIRPLKGEKRKVVLATSIAETSLTIEDIRVVVDTGRARRARFDPRSGMSRLVTEAVSRAEATQRAGRAGRVAEGICYRLWARAEDGALPAFPPAEIETADLTGLALELAQWGAEPSALAFLTQPPAQGLEEGRALLARLDALSNGRITDHGRKVAQMPLHPRLAHMLVKGGPSAAELAALLSHRDPMQGGDADITTRLKAMASNDARFRAIAEDAKRFRKLAGAETDLTVGQQLALAFPDRIGLRRKGDDPRYVLSGGKGAVLDAADGLAGQRLIVACALDGDAREAKVRLAAHLTENELREVYGDAITWRGVCRWSRRDGRILARQQEVFDALVLQDRVWKDVAEDEVARAMLDGVRQMGLRPSPAAERFRARVALVEGLPDMSDQALLERLEEWLLPHLGRVRTAEEWKGFDILPALRAMLDWTQMQRLDADAPAHFTTPLGRDIPIDYSGPAPEITLRLQEMFGQTTHPTVGKTPLRVTLLSPGQKPVQTTQDIPGFWATSYADVRRDMRGRYPKHPWPEDPTQADPTLRAKRRKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SHL5</accession>
    <name>A0A1M5SHL5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">Ornithine carbamoyltransferase</fullName>
            <shortName evidence="5">OTCase</shortName>
            <ecNumber evidence="3 5">2.1.3.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_2964</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>carbamoyl phosphate + L-ornithine = H(+) + L-citrulline + phosphate</text>
            <dbReference type="Rhea" id="RHEA:19513"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:46911"/>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
            <dbReference type="EC" id="2.1.3.3"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.</text>
    </comment>
    <dbReference type="EC" id="2.1.3.3" evidence="3 5"/>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37768.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902391.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2964"/>
    <dbReference type="EnsemblBacteria" id="SHH37768">
        <property type="protein sequence ID" value="SHH37768"/>
        <property type="gene ID" value="SAMN05444003_2964"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016597">
        <property type="term" value="F:amino acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004585">
        <property type="term" value="F:ornithine carbamoyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1370">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01109">
        <property type="entry name" value="OTCase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006132">
        <property type="entry name" value="Asp/Orn_carbamoyltranf_P-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006130">
        <property type="entry name" value="Asp/Orn_carbamoylTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036901">
        <property type="entry name" value="Asp/Orn_carbamoylTrfase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006131">
        <property type="entry name" value="Asp_carbamoyltransf_Asp/Orn-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002292">
        <property type="entry name" value="Orn/put_carbamltrans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024904">
        <property type="entry name" value="OTCase_ArgI"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00185">
        <property type="entry name" value="OTCace"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02729">
        <property type="entry name" value="OTCace_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00100">
        <property type="entry name" value="AOTCASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00102">
        <property type="entry name" value="OTCASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53671">
        <property type="entry name" value="SSF53671"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00658">
        <property type="entry name" value="orni_carb_tr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00097">
        <property type="entry name" value="CARBAMOYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="OTCace_N" evidence="8">
        <location>
            <begin position="3"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="domain" description="OTCace" evidence="7">
        <location>
            <begin position="153"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="region of interest" description="Carbamoyl phosphate binding" evidence="5">
        <location>
            <begin position="56"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="region of interest" description="Carbamoyl phosphate binding" evidence="5">
        <location>
            <begin position="134"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="region of interest" description="Ornithine binding" evidence="5">
        <location>
            <begin position="222"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="region of interest" description="Carbamoyl phosphate binding" evidence="5">
        <location>
            <begin position="259"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="83"/>
        </location>
        <ligand>
            <name>carbamoyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="107"/>
        </location>
        <ligand>
            <name>carbamoyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="165"/>
        </location>
        <ligand>
            <name>L-ornithine</name>
            <dbReference type="ChEBI" id="CHEBI:46911"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="218"/>
        </location>
        <ligand>
            <name>L-ornithine</name>
            <dbReference type="ChEBI" id="CHEBI:46911"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="287"/>
        </location>
        <ligand>
            <name>carbamoyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007805"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH37768.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="301" mass="33488" checksum="985440C0B22BA156" modified="2017-03-15" version="1">MPHFLDIHTTSQSDLRTIIDSAHSMKTARNGRPKGAKDDDQPLAGHMVALIFEKPSTRTRISFDVGVRQLGGETMVLSGADMQLGHGETIADTARVLSRYVDLIMMRTFEEDTLLEMAEYASIPVINGLTNRTHPCQIMADVMTFEEHRGPIKGKKVVWSGDGNNVFASFAHAAKQFDFDLVFTGPEPLDPEPALDGLYSTVRNPQEAVEGADLVVTDTWVSMHDPQSARERRHNQLRGYQVNDELMSHANDDALFMHCLPAHRDDEATSSVMDGPHSVIFDEAENRLHAQKAIMRHCLGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SIV0</accession>
    <name>A0A1M5SIV0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pimeloyl-ACP methyl ester carboxylesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2984</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38198.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902547.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2984"/>
    <dbReference type="EnsemblBacteria" id="SHH38198">
        <property type="protein sequence ID" value="SHH38198"/>
        <property type="gene ID" value="SAMN05444003_2984"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12697">
        <property type="entry name" value="Abhydrolase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="16"/>
            <end position="239"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH38198.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="250" mass="27502" checksum="776CA1E7729A23BF" modified="2017-03-15" version="1">MLNKIVHGDPTNKPPLLIAHGLFGSARNWGVIAKRLSKDRQVVAVDMRNHGHSPWYDTHSYDDLAEDLAQVMDAPFHLLGHSMGGKAAMVMASRYPEKLVSLIVADIAPVAYSHTQMGPIEAMRAVDMSKVNTRGDAKSQLTGLEPGVPDFLVQSFDLETKSWRFNLDVLAAEMDKIIGFPDDVAPCGAPTLFLSGASSDYVRSEYRDLIRENFTAAKFAKIPQAGHWLHAEKPREFEAAVAAFLSMNTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SRY3</accession>
    <name>A0A1M5SRY3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3069</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41255.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH41255">
        <property type="protein sequence ID" value="SHH41255"/>
        <property type="gene ID" value="SAMN05444003_3069"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH41255.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="61" mass="7107" checksum="8C922046DEBE22D1" modified="2017-03-15" version="1">MELSHAGLLQFQHIHKCRPMLVLLKLLKEGFLCFGHRTRDAMTLTFVFANIDTWAWVLGHN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SSM0</accession>
    <name>A0A1M5SSM0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">SGNH hydrolase-like domain-containing protein, acetyltransferase AlgX</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_3082</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="2">Glycan biosynthesis; alginate biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41506.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902619.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3082"/>
    <dbReference type="EnsemblBacteria" id="SHH41506">
        <property type="protein sequence ID" value="SHH41506"/>
        <property type="gene ID" value="SAMN05444003_3082"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00286"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042121">
        <property type="term" value="P:alginic acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031811">
        <property type="entry name" value="ALGX/ALGJ_SGNH-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16822">
        <property type="entry name" value="ALGX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0016">Alginate biosynthesis</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012206394" evidence="4">
        <location>
            <begin position="23"/>
            <end position="443"/>
        </location>
    </feature>
    <feature type="domain" description="ALGX" evidence="5">
        <location>
            <begin position="50"/>
            <end position="308"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005182"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022841"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF16822"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH41506.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="443" mass="48491" checksum="E3FA3F6A386288CB" modified="2017-03-15" version="1">MKTITLLGIAFVAISLGLPVNATPMCPELLQTDNLENKYRRLAPIHTDIENGWIFTSDQLSESYTLKSEAVHLMSGIAEEFESRGIKLAIMIAPPRPLVAGDGVVKSTLGSNSVFDTVAASDSFNQMIEQLRQTGAIVPNLLPVAQEMNQFRQYYFRRDTHWTPAGAAASALELAAEFGFSDAAFSVSDVVSSDIYEEGGSLSNIVNAICGLENDVEQVAKMNYSRIMASQGLGLFGSASEDKIALVGTSFSDRYKRDQYQVADALAAASGADVSNYSISGGGMIGPMEAFILSGDVDDYSNVIWEFPYTQSPNSTSHLRQLLGALRFESSNLSPPQSLELSSSNEAAITFFDRPLKADLIQFETETANLLRVDVVISFESGKTRTIKLRRKDRVPLDRRTTNWFADLSGWDNDSIIEIIAKFDQGVALQQVSFRYQSSVEDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5STZ7</accession>
    <name>A0A1M5STZ7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3109</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41976.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3109"/>
    <dbReference type="EnsemblBacteria" id="SHH41976">
        <property type="protein sequence ID" value="SHH41976"/>
        <property type="gene ID" value="SAMN05444003_3109"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="7"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH41976.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="290" mass="32292" checksum="0B51BC27F81F4F64" modified="2017-03-15" version="1">MASRNTPSLTSLRAFSIVGDCLSVTGAAEQLGVTQSAVSRQIKALEDSLDFKLFDRIGNNIALSPEGRALHQRIFTTFGLLDDAINDATNSFARQKINLLAPPTLAARWLTRRLSEYPQRFEGVDLAVHTEPWPNVRMDCVIHFGKHPHAGSEHVQLFQEQHVAVCSRELFEDRVAMRASSPLHVFDKGIFFPLWDDWLALEPNYPDLPTGPAMEFASLELAIQAAKNSVGVAVVDKNMIEYELIAGSLKQISPTTVAGPNGYWLEISKEQQAKTTSVQFYRWLKRATAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T2Q3</accession>
    <name>A0A1M5T2Q3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Manganese/iron transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_3208</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the ABC-3 integral membrane protein family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45021.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902842.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3208"/>
    <dbReference type="EnsemblBacteria" id="SHH45021">
        <property type="protein sequence ID" value="SHH45021"/>
        <property type="gene ID" value="SAMN05444003_3208"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037294">
        <property type="entry name" value="ABC_BtuC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001626">
        <property type="entry name" value="ABC_TroCD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30477">
        <property type="entry name" value="PTHR30477"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00950">
        <property type="entry name" value="ABC-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81345">
        <property type="entry name" value="SSF81345"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="58"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="95"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="136"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="172"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="196"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="222"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="248"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH45021.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="279" mass="29926" checksum="BC5B65ED8D7F0F08" modified="2017-03-15" version="1">MDLDTLLFPFRFAFMQNAFFISMMISVPTALLSCFLVLKGWALMGDAISHAVLPGVVLAYVLGFPLLIGAFAAGMICAVATGYLAQNSRVKQDTVMGVVFSGMFGLGIVMYVAFETNAHLDHILFGNMLGIEPDELWTAGIISAVVAAAILIKRKDLLLHSFDPAQAQASGLAVNWLHYGLLAALSLTIVATLAAVGLILAIGLLIGPGAIAFLVTRTFGHMMWIAVVVNMVSMLLGTYLSFFIDSAPAPTIILIQTALFICAFLYRTRLNKSAERSMV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T588</accession>
    <name>A0A1M5T588_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">N-acetylglucosamine kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3244</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45858.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902902.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3244"/>
    <dbReference type="EnsemblBacteria" id="SHH45858">
        <property type="protein sequence ID" value="SHH45858"/>
        <property type="gene ID" value="SAMN05444003_3244"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000600">
        <property type="entry name" value="ROK"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18964">
        <property type="entry name" value="PTHR18964"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00480">
        <property type="entry name" value="ROK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01125">
        <property type="entry name" value="ROK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH45858.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="301" mass="30897" checksum="B819F67FB6A78FC7" modified="2017-03-15" version="1">MTVAGLDIGGTKIEVQIFDEDWNEVARNRCATPEGYEDLVGDIASQIRWATEEAGGLDAIGVGTAGLVNPRTGLALTANLPATDHPLPADIEKAIGRPITFVNDCRALALSEAVFGAGRGRRTVMGLIIGTGIGGGIAIDGALIPGPTATGGEFGHFAAPAQLVAKHSLPVVQCGCGRMGCIETYVAGPGLERLAKHLTGQSLTAPEIADRRHVVMAEVWSLWCELAAEMLHTLTLTVDPDVIVFGGGLSKVPGVIDDLTAAAASSQIPGFAPAQLVLAQGGDSSGARGAAYAAWTEQQDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T7V9</accession>
    <name>A0A1M5T7V9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Xylan 1,4-beta-xylosidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_3286</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the glycosyl hydrolase 43 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46845.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902969.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3286"/>
    <dbReference type="EnsemblBacteria" id="SHH46845">
        <property type="protein sequence ID" value="SHH46845"/>
        <property type="gene ID" value="SAMN05444003_3286"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.115.10.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041542">
        <property type="entry name" value="GH43_C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006710">
        <property type="entry name" value="Glyco_hydro_43"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023296">
        <property type="entry name" value="Glyco_hydro_beta-prop_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17851">
        <property type="entry name" value="GH43_C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04616">
        <property type="entry name" value="Glyco_hydro_43"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="SSF49899"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75005">
        <property type="entry name" value="SSF75005"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="2 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GH43_C2" evidence="7">
        <location>
            <begin position="334"/>
            <end position="533"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="4">
        <location>
            <position position="15"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="4">
        <location>
            <position position="195"/>
        </location>
    </feature>
    <feature type="site" description="Important for catalytic activity, responsible for pKa modulation of the active site Glu and correct orientation of both the proton donor and substrate" evidence="5">
        <location>
            <position position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009865"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR606710-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR606710-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU361187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF17851"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH46845.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="538" mass="60863" checksum="1F28110E827B4B0A" modified="2017-03-15" version="1">MTEIRNPILRGFHPDPSICRVGDDYYIATSTFEWYPGVQISHSKDLVNWRTVGQALNRKEQLDMRGNPDSGGVWAPSLSYADGKFWLIYTDVKRLDGSSKDAHNYLVTSETIEGPWSDPIYMNSSGFDPSLFHDDDGRKWFVNMVWNHLAMQGDPNAPTKHLFGGILLQEYDHEAGRLTGPIKNIFPGSDLGLTEAPHLFKRDEYYYLITAEGGTGYGHAVTFARSKTIEGPYELHPNPHLLRVFETPDSPLQRTGHGQYVETQDGTPYHTFLCTRPLPGTRKSPMGRETGITRCRWEDDGWLYLDQGGLIPPAQETAPDLPVYEFEPEPTIHDFSQLESLPNTFMWPRTPESDRIFNLSSEGLVLTGRESIGSWFEQSLVARRQTEWDCEARTKVSFDPEDFQQMAGLTAYYNRTQFHYLGVTRSQDGHRALNILSCHNWPEGTLTFPLDAMFAIPEEGAVWLALSIRRGALQFSYSLDGRAYVEIGPELDAHILSDEGVRGEHSNFTGTYIGMAAQDLTGRAQQATFEFFELSNHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TAT7</accession>
    <name>A0A1M5TAT7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">TRAP-type mannitol/chloroaromatic compound transport system, small permease component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_3311</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000009">
        <property type="protein sequence ID" value="SHH47897.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072903029.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000009.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3311"/>
    <dbReference type="EnsemblBacteria" id="SHH47897">
        <property type="protein sequence ID" value="SHH47897"/>
        <property type="gene ID" value="SAMN05444003_3311"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007387">
        <property type="entry name" value="TRAP_DctQ"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35011">
        <property type="entry name" value="PTHR35011"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04290">
        <property type="entry name" value="DctQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="17"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="53"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="90"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="153"/>
            <end position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH47897.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="193" mass="21667" checksum="EC5A9A58296A65E8" modified="2017-03-15" version="1">MNALLGFSRAIDGMNRVIGLIVMYSVFVLMGILLWSSISKTFFLPSLWTLETAQFAMVAYYMLGGPYALLSGGHVRMDLFYGEWSLRRKATIDVITVLFLIFYLVVLLYGALGSTAYSLGYWGKAPLEFFAGLITGTEEVGRLERSSTAWRPYIWPIKATMIFGLFLMLLQALSELIKDVARATGRMEPEART</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TB16</accession>
    <name>A0A1M5TB16_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">TRAP transporter, DctM subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_3310</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000009">
        <property type="protein sequence ID" value="SHH47866.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072903027.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000009.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3310"/>
    <dbReference type="EnsemblBacteria" id="SHH47866">
        <property type="protein sequence ID" value="SHH47866"/>
        <property type="gene ID" value="SAMN05444003_3310"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010656">
        <property type="entry name" value="DctM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004681">
        <property type="entry name" value="TRAP_DctM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33362">
        <property type="entry name" value="PTHR33362"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06808">
        <property type="entry name" value="DctM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006066">
        <property type="entry name" value="HI0050"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="7"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="58"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="87"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="115"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="144"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="173"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="222"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="247"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="280"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="320"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="352"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="377"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="407"/>
            <end position="432"/>
        </location>
    </feature>
    <feature type="domain" description="DctM" evidence="4">
        <location>
            <begin position="11"/>
            <end position="428"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF06808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH47866.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="439" mass="47851" checksum="3AEB9D83FA9D3B01" modified="2017-03-15" version="1">MSQEHIALFMFGSMMLMLFTGQRVFGAIGAIAAIAALALYGTGGQDIPFSAAMKLMKWYPLLTLPMFIFMGYVLSESKLADDLYRMFHVWFGNVNGGLAMGTIGLMVLISAMNGLSVAGMAIGATIALPELLRRGYDKQMVTGVIQAGSSLGILVPPSVVLVLYAMIARQPVGQLWLAGIIPGLMMAAMFVIYIWIRCRLNPALGPVADDLDQVTPQEKRKLLWAGALPLIIFASMMVPFVNGWTSLVESSAIGALAALTASILKRRMTWAVFHTCTKQTLVISCMFMWIILAALGFGAIFDGLGAVNAIDNLFTEQLGLSPWVILILMQLSFIIMGTFLDDTAMLVIVAPLYVPLVGSLGFDLIWYGVLYTITTQIAYMTPPFGYNLFLMRAMAPPEITLRDIYRSIIPFVGVMVTALAIIMAFPEIALWLPGYVYGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TCC8</accession>
    <name>A0A1M5TCC8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Nucleotide-binding universal stress protein, UspA family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3324</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal stress protein A family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000011">
        <property type="protein sequence ID" value="SHH48427.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072903048.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000011.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3324"/>
    <dbReference type="EnsemblBacteria" id="SHH48427">
        <property type="protein sequence ID" value="SHH48427"/>
        <property type="gene ID" value="SAMN05444003_3324"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006015">
        <property type="entry name" value="Universal_stress_UspA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006016">
        <property type="entry name" value="UspA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00582">
        <property type="entry name" value="Usp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01438">
        <property type="entry name" value="UNVRSLSTRESS"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Usp" evidence="2">
        <location>
            <begin position="1"/>
            <end position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008791"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH48427.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="136" mass="14765" checksum="B675E05C1911B682" modified="2017-03-15" version="1">MYKKILVPMALDHGLSEKTLEIAKALAGPDGNIVALHVYEAPQGSVQTYLDADVKKQAVDNAIAQLEAKTAHLEDIQTEMVMGHTYRSIIDYAAANDVECIVMGSHKPGFSDYLLGSTAARVVRHAPCAVHVYRTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L237</accession>
    <name>A0A1M5L237_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Putative oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0056</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the DoxX family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59108.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898392.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0056"/>
    <dbReference type="EnsemblBacteria" id="SHG59108">
        <property type="protein sequence ID" value="SHG59108"/>
        <property type="gene ID" value="SAMN05444003_0056"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032808">
        <property type="entry name" value="DoxX"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07681">
        <property type="entry name" value="DoxX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="20"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="44"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="83"/>
            <end position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG59108.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="188" mass="20444" checksum="147CE7EBE7A18812" modified="2017-03-15" version="1">MLESFNRVGASMSRAGDEILPLMARFSFAAVLLVYFWKSGLTKLGDGFFGFLNPSLGAYAQIFPKQMEAVGYDVSQLSFFHTLVVLAGTWAEFILPLSIVIGLLTRLSALGMIGFIFVQSLTDLYAHGTINDPAVFGAWFDADSASLILDQRTMWVMCLSVLVFKGAGSISVDRALNGMLGHRADGQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L4R3</accession>
    <name>A0A1M5L4R3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">CTP synthase</fullName>
            <ecNumber evidence="9">6.3.4.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Cytidine 5'-triphosphate synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">Cytidine triphosphate synthetase</fullName>
            <shortName evidence="9">CTP synthetase</shortName>
            <shortName evidence="9">CTPS</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">UTP--ammonia ligase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">pyrG</name>
        <name evidence="12" type="ORF">SAMN05444003_0090</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>ATP + H2O + L-glutamine + UTP = ADP + CTP + 2 H(+) + L-glutamate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:26426"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:46398"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.4.2"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>ATP + NH4(+) + UTP = ADP + CTP + 2 H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:16597"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:46398"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>H2O + L-glutamine = L-glutamate + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:15889"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </reaction>
    </comment>
    <comment type="activity regulation">
        <text evidence="9">Allosterically activated by GTP, when glutamine is the substrate; GTP has no effect on the reaction when ammonia is the substrate. The allosteric effector GTP functions by stabilizing the protein conformation that binds the tetrahedral intermediate(s) formed during glutamine hydrolysis. Inhibited by the product CTP, via allosteric rather than competitive inhibition.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 9">Pyrimidine metabolism; CTP biosynthesis via de novo pathway; CTP from UDP: step 2/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Homotetramer.</text>
    </comment>
    <comment type="miscellaneous">
        <text evidence="9">CTPSs have evolved a hybrid strategy for distinguishing between UTP and CTP. The overlapping regions of the product feedback inhibitory and substrate sites recognize a common feature in both compounds, the triphosphate moiety. To differentiate isosteric substrate and product pyrimidine rings, an additional pocket far from the expected kinase/ligase catalytic site, specifically recognizes the cytosine and ribose portions of the product inhibitor.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the CTP synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.2" evidence="9"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59759.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898434.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0090"/>
    <dbReference type="EnsemblBacteria" id="SHG59759">
        <property type="protein sequence ID" value="SHG59759"/>
        <property type="gene ID" value="SAMN05444003_0090"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00159">
        <property type="reaction ID" value="UER00277"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003883">
        <property type="term" value="F:CTP synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044210">
        <property type="term" value="P:'de novo' CTP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd03113">
        <property type="entry name" value="CTPS_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01746">
        <property type="entry name" value="GATase1_CTP_Synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01227">
        <property type="entry name" value="PyrG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004468">
        <property type="entry name" value="CTP_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017456">
        <property type="entry name" value="CTP_synthase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017926">
        <property type="entry name" value="GATASE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033828">
        <property type="entry name" value="GATase1_CTP_Synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11550">
        <property type="entry name" value="PTHR11550"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06418">
        <property type="entry name" value="CTP_synth_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00117">
        <property type="entry name" value="GATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00337">
        <property type="entry name" value="PyrG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7 9" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="4 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8 9" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CTP_synth_N" evidence="11">
        <location>
            <begin position="3"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="domain" description="GATase" evidence="10">
        <location>
            <begin position="301"/>
            <end position="539"/>
        </location>
    </feature>
    <feature type="region of interest" description="Amidoligase domain" evidence="9">
        <location>
            <begin position="1"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="region of interest" description="L-glutamine binding" evidence="9">
        <location>
            <begin position="381"/>
            <end position="384"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile; for glutamine hydrolysis" evidence="9">
        <location>
            <position position="380"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="519"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="521"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="13"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="14"/>
            <end position="19"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="139"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="146"/>
            <end position="148"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <note>allosteric inhibitor</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="186"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="222"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="240"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="353"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="404"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="474"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000314"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF06418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG59759.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="547" mass="60717" checksum="B6E29E5F36C38B9A" modified="2017-03-15" version="1">MARFIFITGGVVSSLGKGLASAALGSLLQARGYSVRLRKLDPYLNVDPGTMSPFEHGEVFVTDDGAETDLDLGHYERFTGVPARKTDSVSSGRIYSDVLEKERRGDYLGKTIQVVPHVTNEIKDFIAIGEDEVDFMLCEIGGTVGDIEGLPFFEAIRQFSHDKPRGQCIFMHLTLLPYLAASGELKTKPTQHSVKELQSIGIAPDILVCRSEQPIPDKEREKIALFCNVRKEAVVAAYDLSSIYEAPLAYHKQGLDQAVLDAFGISPAPAPKLEIWDDVYDRIHNYDGEVKVAIVGKYTQLEDAYKSIKEALTHGGMANRVKVKVEWVDAELFDKGDATPHLEGFHAILVPGGFGERGTEGKIKAAQFARERKIPYLGICLGMQMAVIEAARNVAGVEKAGSEEFDHEAGKKRFEPVVYHLKEWVQGNHKVERKADDDKGGTMRLGAYDASLAEGSKVAEVYGCTAIEERHRHRYEVDIKYREKLEAAGLKFTGMSPDGRLPEIVEWTDHPWFIGVQFHPELKSKPFEPHPLFDGFVQAAVENSRLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L5T4</accession>
    <name>A0A1M5L5T4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0116</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
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            <taxon>Rhodobacteraceae</taxon>
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        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60320.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG60320">
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        <property type="gene ID" value="SAMN05444003_0116"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG60320.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="44" mass="4800" checksum="43CDF69CA0D9F0E3" modified="2017-03-15" version="1">MGNSQTEVGYSSLFSSFDKFLMRYFNGDVTATAGRSVRSALLTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LAT4</accession>
    <name>A0A1M5LAT4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0195</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62131.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG62131">
        <property type="protein sequence ID" value="SHG62131"/>
        <property type="gene ID" value="SAMN05444003_0195"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
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    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="65"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="104"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="133"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="179"/>
            <end position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG62131.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="219" mass="24112" checksum="AB5F534D33A8C46E" modified="2017-03-15" version="1">MRMCGFDGLDSFLGKKAGRPATFETQCFLDEFSILLHSIWYDLRLYQVPMFSGFKLSDLTQGEKALLASYACAGAVGAWTSHIVAHRLLGRDAVLSNTLGIFEIWTLCAGAIGAILAIYLNRRWFGHLGFTGFKFTLVAVLNTTFVATLIGGTLALPIFGTMFGPLAITGTFWSSPPVLYLWLASLLGANYAYGLYRKERASVFLARLSSEEDPISRRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LBK8</accession>
    <name>A0A1M5LBK8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized conserved protein GlcG, DUF336 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0204</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
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            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898586.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0204"/>
    <dbReference type="EnsemblBacteria" id="SHG62350">
        <property type="protein sequence ID" value="SHG62350"/>
        <property type="gene ID" value="SAMN05444003_0204"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005624">
        <property type="entry name" value="PduO/GlcC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038084">
        <property type="entry name" value="PduO/GlcC-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03928">
        <property type="entry name" value="Haem_degrading"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143744">
        <property type="entry name" value="SSF143744"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG62350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="142" mass="14494" checksum="2A1ECA545CE210C1" modified="2017-03-15" version="1">MAEISANRARTIIRKTLAKGKEMGLKPLSVVVLDSGGHVKAFEREDGAAPGRFAIAHGKAYGAVMLGMPGSAQMARAEKQHYFMTAVNGVYGGQVVPVPGGILVLDKRGNTIGAVGVTGDTSDNDLEAGMVGIEAAGLSGQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LH59</accession>
    <name>A0A1M5LH59_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Membrane protein required for colicin V production</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_0284</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898713.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0284"/>
    <dbReference type="EnsemblBacteria" id="SHG64306">
        <property type="protein sequence ID" value="SHG64306"/>
        <property type="gene ID" value="SAMN05444003_0284"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009403">
        <property type="term" value="P:toxin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003825">
        <property type="entry name" value="Colicin-V_CvpA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02674">
        <property type="entry name" value="Colicin_V"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="71"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="111"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG64306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="188" mass="19848" checksum="7715DB6FA831CB4C" modified="2017-03-15" version="1">MEGFTIVDGVVAAIIVISALLAYSRGFVREAMAIAGWIGATILAFIFADQVEPLVRQIPILGDFIGDSCELSIIAAFALVFAVSLVVVSIFTPLFSTLVQRSALGGLDQGAGFLFGVLRGILLVAVAFFVYETVLATQDIAMIEDSRSAKVFARLTGQVEGQDPEAALSWITTQYEQLVGACGAPAPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LI17</accession>
    <name>A0A1M5LI17_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0297</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64596.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898731.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0297"/>
    <dbReference type="EnsemblBacteria" id="SHG64596">
        <property type="protein sequence ID" value="SHG64596"/>
        <property type="gene ID" value="SAMN05444003_0297"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG64596.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="320" mass="35903" checksum="D614BE2EC10119F5" modified="2017-03-15" version="1">MEDHALEFEPRLKGLSIRDWSNRLQEIADEFGTAKELGPDHTAYFLKAGPQLLVTFESVERIRASKLSAEPRGIVYAREEGWSCLTIVSERQSWFRDQVIYSYFDALTDEGFFEAFEDVLFYGALAGGYAAAAYSVAAPGARVLAIQPQATLDPRIAGFDTRFKPHRRYDFTSRYGFAPEMIDAAMQAYVVFDPMQKIDGAHAALFAKRNVDLLQATSIGRDIETTFDGLGTHDDMMLSAMEGRLTTLKFAKLMRARRAHDPYIRRVLNRALKAGHTQLAANLCAYVLRQTDDPFFRERLAELAADGLRPARPVISSAAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LJB9</accession>
    <name>A0A1M5LJB9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Predicted oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0291</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0291"/>
    <dbReference type="EnsemblBacteria" id="SHG64463">
        <property type="protein sequence ID" value="SHG64463"/>
        <property type="gene ID" value="SAMN05444003_0291"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020471">
        <property type="entry name" value="AKR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023210">
        <property type="entry name" value="NADP_OxRdtase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036812">
        <property type="entry name" value="NADP_OxRdtase_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00248">
        <property type="entry name" value="Aldo_ket_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00069">
        <property type="entry name" value="ALDKETRDTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51430">
        <property type="entry name" value="SSF51430"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldo_ket_red" evidence="1">
        <location>
            <begin position="31"/>
            <end position="319"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG64463.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="330" mass="35814" checksum="CA258648D9404826" modified="2017-03-15" version="1">MVNFKKIHAKQALGVGCWAIGGPFYSLDGIARGWGEVDDAVSTKALHAALDHGVVHFDTAQAYGAGHSETVLGQALKGRDVAIATKIGLEINGEKKLITGPMTDPVEIKRSLVGSLRRLQRDHIDLVLLHLNQLEKENADPIFDALDDMIQDGKVGSFGWSTDFPENASPQADRLNFTAVEHAMNVFLPASGMCELAKENNLVALIRSPLAMGVLTGKYDSTTRFSKDDIRNTGDASNTYLMDGRITETALSQREAVRDILQSNGRSIAQGALAWLWARSANTMPIPGVRTAEQATDLCGALDAGPLTPEQMIEIEQILERPEAEDIREL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LK06</accession>
    <name>A0A1M5LK06_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">L-rhamnose mutarotase</fullName>
            <ecNumber evidence="5">5.1.3.32</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Rhamnose 1-epimerase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">Type-3 mutarotase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rhaM</name>
        <name evidence="6" type="ORF">SAMN05444003_0331</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Involved in the anomeric conversion of L-rhamnose.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>alpha-L-rhamnose = beta-L-rhamnose</text>
            <dbReference type="Rhea" id="RHEA:25584"/>
            <dbReference type="ChEBI" id="CHEBI:27586"/>
            <dbReference type="ChEBI" id="CHEBI:27907"/>
            <dbReference type="EC" id="5.1.3.32"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="5">Carbohydrate metabolism; L-rhamnose metabolism.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the rhamnose mutarotase family.</text>
    </comment>
    <dbReference type="EC" id="5.1.3.32" evidence="5"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65240.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0331"/>
    <dbReference type="EnsemblBacteria" id="SHG65240">
        <property type="protein sequence ID" value="SHG65240"/>
        <property type="gene ID" value="SAMN05444003_0331"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00125"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0062192">
        <property type="term" value="F:L-rhamnose mutarotase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019299">
        <property type="term" value="P:rhamnose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01663">
        <property type="entry name" value="L_rham_rotase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013448">
        <property type="entry name" value="L-rhamnose_mutarotase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008000">
        <property type="entry name" value="Rham/fucose_mutarotase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05336">
        <property type="entry name" value="rhaM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02625">
        <property type="entry name" value="YiiL_rotase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="1 5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 5" id="KW-0413">Isomerase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0684">Rhamnose metabolism</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="76"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="5">
        <location>
            <position position="22"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="18"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="41"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023308"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01663"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG65240.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="104" mass="12275" checksum="FC29FF05EF6B64C8" modified="2017-03-15" version="1">MEKYAFKMHLNPGMKSEYLKRHDEIWPELVTLLKEAGVSDYSIHLDEETNVLFGVLWRPEDHKMDSLPSHEIMKKWWAHMADIMETHNNNEPVAVPLTTVFHMS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LLM4</accession>
    <name>A0A1M5LLM4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0363</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65915.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG65915">
        <property type="protein sequence ID" value="SHG65915"/>
        <property type="gene ID" value="SAMN05444003_0363"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="29"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG65915.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="56" mass="6010" checksum="E48FCD4072D9256A" modified="2017-03-15" version="1">MIYPLAGLLIGAIVGAVRAKMRGGKVLDMLQWGAVFAMIFGLIGLFALVFIERSLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LMQ5</accession>
    <name>A0A1M5LMQ5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Indole-3-glycerol phosphate synthase</fullName>
            <shortName evidence="8">IGPS</shortName>
            <ecNumber evidence="8">4.1.1.48</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">trpC</name>
        <name evidence="10" type="ORF">SAMN05444003_0375</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate + H(+) = (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate + CO2 + H2O</text>
            <dbReference type="Rhea" id="RHEA:23476"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:58613"/>
            <dbReference type="ChEBI" id="CHEBI:58866"/>
            <dbReference type="EC" id="4.1.1.48"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 4/5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the TrpC family.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.48" evidence="8"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898844.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0375"/>
    <dbReference type="EnsemblBacteria" id="SHG66190">
        <property type="protein sequence ID" value="SHG66190"/>
        <property type="gene ID" value="SAMN05444003_0375"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00035">
        <property type="reaction ID" value="UER00043"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004425">
        <property type="term" value="F:indole-3-glycerol-phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000162">
        <property type="term" value="P:tryptophan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00331">
        <property type="entry name" value="IGPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00134_B">
        <property type="entry name" value="IGPS_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045186">
        <property type="entry name" value="Indole-3-glycerol_P_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013798">
        <property type="entry name" value="Indole-3-glycerol_P_synth_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001468">
        <property type="entry name" value="Indole-3-GlycerolPSynthase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22854">
        <property type="entry name" value="PTHR22854"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00218">
        <property type="entry name" value="IGPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="SSF51366"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00614">
        <property type="entry name" value="IGPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="6 8" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="4 8" id="KW-0210">Decarboxylase</keyword>
    <keyword evidence="7 8" id="KW-0456">Lyase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0822">Tryptophan biosynthesis</keyword>
    <feature type="domain" description="IGPS" evidence="9">
        <location>
            <begin position="6"/>
            <end position="260"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001633"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004696"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022822"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00218"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG66190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="270" mass="29509" checksum="8B7D1D3AAD3B9911" modified="2017-03-15" version="1">MTDTILDKIKAYKLDHIAACKEAMPIGEVEARAKDAPETRGFHKRLVEASRQGYGLIAEIKKASPSKGLIRPDFDPPALAKAYEDGGATCLSVLTDGPSFQGDDSFLTAARSAVSLPALRKDFMYDTYQVAEARALHADCILIILASVSDAQAQELEDAAISWGMDVLLEVHNAEELERACHLKSPLMGINNRNLKTFDVTLDTTRELSRQVPADRMIVCESGLFTPDDLADMARYGARTFLIGESLMRQDDVTTATRELLSKPLTASGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LQZ3</accession>
    <name>A0A1M5LQZ3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0433</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67534.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0433"/>
    <dbReference type="EnsemblBacteria" id="SHG67534">
        <property type="protein sequence ID" value="SHG67534"/>
        <property type="gene ID" value="SAMN05444003_0433"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021273">
        <property type="entry name" value="DUF2852"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11014">
        <property type="entry name" value="DUF2852"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="29"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG67534.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="148" mass="16769" checksum="A64B48AA7D900FF6" modified="2017-03-15" version="1">MTFATTDVPRAHRRTASKQTPTSVQILSMLLFAVFAVPTAIVMINVFWPAGFALALVFAIYWPRPFETKTKGLDATEVEEMVKDLVPSQEPRSSGNASFDAYRSDVIERLEAEQVNFEAFLERLRDAKDKTEFDQFMDDRAAMPRDAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LSE1</accession>
    <name>A0A1M5LSE1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Phosphopantetheine adenylyltransferase</fullName>
            <ecNumber evidence="6">2.7.7.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Dephospho-CoA pyrophosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Pantetheine-phosphate adenylyltransferase</fullName>
            <shortName evidence="6">PPAT</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">coaD</name>
        <name evidence="8" type="ORF">SAMN05444003_0451</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Reversibly transfers an adenylyl group from ATP to 4'-phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5 6">
            <text>(R)-4'-phosphopantetheine + ATP + H(+) = 3'-dephospho-CoA + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:19801"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57328"/>
            <dbReference type="ChEBI" id="CHEBI:61723"/>
            <dbReference type="EC" id="2.7.7.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="6">Cofactor biosynthesis; coenzyme A biosynthesis; CoA from (R)-pantothenate: step 4/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homohexamer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the bacterial CoaD family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.3" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67931.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898958.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0451"/>
    <dbReference type="EnsemblBacteria" id="SHG67931">
        <property type="protein sequence ID" value="SHG67931"/>
        <property type="gene ID" value="SAMN05444003_0451"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00241">
        <property type="reaction ID" value="UER00355"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004595">
        <property type="term" value="F:pantetheine-phosphate adenylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015937">
        <property type="term" value="P:coenzyme A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02163">
        <property type="entry name" value="PPAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00151">
        <property type="entry name" value="PPAT_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004821">
        <property type="entry name" value="Cyt_trans-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001980">
        <property type="entry name" value="PPAT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21342:SF1">
        <property type="entry name" value="PTHR21342:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01467">
        <property type="entry name" value="CTP_transf_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01020">
        <property type="entry name" value="LPSBIOSNTHSS"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01510">
        <property type="entry name" value="coaD_prev_kdtB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00125">
        <property type="entry name" value="cyt_tran_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 6" id="KW-0173">Coenzyme A biosynthesis</keyword>
    <keyword evidence="1 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2 6 8" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="CTP_transf_like" evidence="7">
        <location>
            <begin position="5"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="9"/>
            <end position="10"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="9"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="17"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="41"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="78"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="92"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="93"/>
            <end position="95"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="103"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="128"/>
            <end position="134"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="6">
        <location>
            <position position="17"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022993"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00029346"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG67931.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="164" mass="17924" checksum="29193B35401D4747" modified="2017-03-15" version="1">MRTGLYPGTFDPIHHGHIDIIRRGCSLVDRLVIGVAINRDKGPMFSLEERVAMIEAEVGPVATETGCEIVVHPFENLLIDCARDVGASVIVRGLRAVADFEYEFQMVGMNRSLDNSIETVFLMADAKNQAIASKLVKEIARLGGDVSKFVTPAVREALVERVSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LV40</accession>
    <name>A0A1M5LV40_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Phosphoribosylaminoimidazole-succinocarboxamide synthase</fullName>
            <ecNumber evidence="8">6.3.2.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">SAICAR synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">purC</name>
        <name evidence="10" type="ORF">SAMN05444003_0495</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate + ATP + L-aspartate = (2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinate + ADP + 2 H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:22628"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58443"/>
            <dbReference type="ChEBI" id="CHEBI:77657"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.6"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate: step 1/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the SAICAR synthetase family.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.6" evidence="8"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68928.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0495"/>
    <dbReference type="EnsemblBacteria" id="SHG68928">
        <property type="protein sequence ID" value="SHG68928"/>
        <property type="gene ID" value="SAMN05444003_0495"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00131"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004639">
        <property type="term" value="F:phosphoribosylaminoimidazolesuccinocarboxamide synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01415">
        <property type="entry name" value="SAICAR_synt_PurC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00137">
        <property type="entry name" value="SAICAR_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028923">
        <property type="entry name" value="SAICAR_synt/ADE2_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033934">
        <property type="entry name" value="SAICAR_synt_PurC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001636">
        <property type="entry name" value="SAICAR_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018236">
        <property type="entry name" value="SAICAR_synthetase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01259">
        <property type="entry name" value="SAICAR_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00081">
        <property type="entry name" value="purC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01057">
        <property type="entry name" value="SAICAR_SYNTHETASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01058">
        <property type="entry name" value="SAICAR_SYNTHETASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 8" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 8" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SAICAR_synt" evidence="9">
        <location>
            <begin position="38"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004672"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010190"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01259"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG68928.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="285" mass="31967" checksum="518CA3C0F7E128B7" modified="2017-03-15" version="1">METLVLAHKGWVSYEAAKVAPLLALMGKEADMARRKMIYEGKAKILYEGPEPGTFVQYFKDDATAYNAEKKAVIEGKGVLNNRLSEFFMTGLQGIGIPTHFIKRLNMREQLIRQVEIVPLEVIVRNIAAGSMAKRMGMEEGTPLPRPIVEFSYKDDSLGDPLVPEEYIIAFGWASQQDLDDIVSMALRVNDYMSGLMHGVGIKLIDFKLEFGRLWDGDFQRLALADEISPDSCRLWDVETGQRLDKDVFRKDLGSLSDAYTEVARRLGVLPSNVTHVPTKPTPIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LY35</accession>
    <name>A0A1M5LY35_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0544</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70012.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899085.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG70012">
        <property type="protein sequence ID" value="SHG70012"/>
        <property type="gene ID" value="SAMN05444003_0544"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG70012.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="154" mass="16865" checksum="1F7B54605FA749F3" modified="2017-03-15" version="1">MQPPQLADIFLIPLMDGDFAVGQVVNAKDTPEGTVLCILTLLKSAPDWPPSPIHYSEAIALVLTQTASLTDGTWQTVGFEAVPALERVFDLEKAVASNFENLTVHDPAILEAFVNACHGLYPWDGFPDSQFFTKLLIHPDRIPSTAKMKSQFPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MBJ8</accession>
    <name>A0A1M5MBJ8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Fe2OG dioxygenase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0720</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the iron/ascorbate-dependent oxidoreductase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74103.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899361.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0720"/>
    <dbReference type="EnsemblBacteria" id="SHG74103">
        <property type="protein sequence ID" value="SHG74103"/>
        <property type="gene ID" value="SAMN05444003_0720"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005123">
        <property type="entry name" value="Oxoglu/Fe-dep_dioxygenase"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51471">
        <property type="entry name" value="FE2OG_OXY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0408">Iron</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fe2OG dioxygenase" evidence="2">
        <location>
            <begin position="137"/>
            <end position="244"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU003682"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG74103.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="278" mass="31070" checksum="94C7C990935EA81B" modified="2017-03-15" version="1">MDAQHLINMDRFPIFEEGENRAALVKQVQADLADDGCAVLKGFASKVGLASMLKEADSVAHKGHKSTGRTNAYFTQDDPCLPHDHPRRQFFDRSNCFVPADNFPPEGPLRSLYENVVFSGFVKNCLQEDAFFPYADPLADVIVNAAEEGNGFPWHFDTNNFTVTLALQNADDGGAFEYAPNVRKGDENFAEVARVLDGSSDLVKTLHLEPGDLQIFRGRYSLHRVTPLSGPTPRYVAIFSWVDQPDMVATPERCKQLYGRVLPIHYERAGLRSDEFID</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MBS6</accession>
    <name>A0A1M5MBS6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">LysR family transcriptional regulator, glycine cleavage system transcriptional activator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0747</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74716.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899403.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0747"/>
    <dbReference type="EnsemblBacteria" id="SHG74716">
        <property type="protein sequence ID" value="SHG74716"/>
        <property type="gene ID" value="SAMN05444003_0747"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="6"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG74716.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="287" mass="31424" checksum="BA0043504B4C70F4" modified="2017-03-15" version="1">MAKSLPPLTWFRSFEAAARTLSFTAAADEIGLTQSAVSQQVKSLEMRLGVLLFSRRPRGLALTDEGRKLLPQVGAALETLSAAAKSFELGPSTNLLTIATSVSVAQWLITPHLSEFREQHPDIKIRILSAVWPDDFQVARADVEIRFGSDKQVGANAELLEPNALVALKSPRLQGNLADLPLIETVGTSVSWSDWKQDGDQKLKPTIYTDTYGMALQMAADGNGVALISELLEPHAVSTGLVERVDEQKLFGQEGYYLSVNEGVPEAEEFRQWLLDKLASVQFTSQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MGB0</accession>
    <name>A0A1M5MGB0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">DNA repair photolyase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_0815</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76286.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899495.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0815"/>
    <dbReference type="EnsemblBacteria" id="SHG76286">
        <property type="protein sequence ID" value="SHG76286"/>
        <property type="gene ID" value="SAMN05444003_0815"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040086">
        <property type="entry name" value="MJ0683-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43432">
        <property type="entry name" value="PTHR43432"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01084">
        <property type="entry name" value="Uncharacterised_Radical_SAM_Su"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="8" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="7">
        <location>
            <begin position="62"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG76286.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="360" mass="40305" checksum="42AD8E1F214B96CE" modified="2017-03-15" version="1">MNACNSKDRHTIKGRGTRSNPAVRFDQHRTEAFDDGWDLEEDLPTLRTEVSIERPRKVITRNTSPDLSFDRSLNPYRGCEHGCVYCYARPSHAYLGMSPGLDFETKLIARPDMPALLEKELRHPSYVPKTVAIGTNTDPYQPIERDQQIMRGVLQVLCDFDHPVGVVTKGALITRDIDILAPMAKKGLVRVGISIATLDDKTGRAMEPRVPSAKTKLRAIKQLSDAGIPVRIMVSPIVPALTDHELETILEATANAGAVAASSIVLRLPLEVSVLFKDWLAEHFPDRAERVLGRVRELHGGKDYDPTFGKRMTGQGKWAELIQQRFKLKTRQLGLDRTLPQLRTDLFQVPLKSGDQLSLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MGD4</accession>
    <name>A0A1M5MGD4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 8 10">Integration host factor subunit alpha</fullName>
            <shortName evidence="8">IHF-alpha</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">ihfA</name>
        <name evidence="8" type="synonym">himA</name>
        <name evidence="11" type="ORF">SAMN05444003_0813</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8 10">This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8 10">Heterodimer of an alpha and a beta chain.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 8 9">Belongs to the bacterial histone-like protein family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76237.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900403.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0813"/>
    <dbReference type="EnsemblBacteria" id="SHG76237">
        <property type="protein sequence ID" value="SHG76237"/>
        <property type="gene ID" value="SAMN05444003_0813"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030527">
        <property type="term" value="F:structural constituent of chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006417">
        <property type="term" value="P:regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd13835">
        <property type="entry name" value="IHF_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.520.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00380">
        <property type="entry name" value="IHF_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000119">
        <property type="entry name" value="Hist_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020816">
        <property type="entry name" value="Histone-like_DNA-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010992">
        <property type="entry name" value="IHF-like_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005684">
        <property type="entry name" value="IHF_alpha"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33175">
        <property type="entry name" value="PTHR33175"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00216">
        <property type="entry name" value="Bac_DNA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01727">
        <property type="entry name" value="DNABINDINGHU"/>
    </dbReference>
    <dbReference type="SMART" id="SM00411">
        <property type="entry name" value="BHL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47729">
        <property type="entry name" value="SSF47729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00987">
        <property type="entry name" value="himA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00045">
        <property type="entry name" value="HISTONE_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8 10" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="5 8 10" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8 10" id="KW-0804">Transcription</keyword>
    <keyword evidence="4 8 10" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="3 8 10" id="KW-0810">Translation regulation</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00018329"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00380"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003939"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU004485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG76237.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="100" mass="10926" checksum="A7C0970ED9937451" modified="2017-03-15" version="1">MSDKTLTRMDLADAVHSQVGLSRNESADLVESVLDHVSDALVRGESVKISSFGTFSIRDKAARVGRNPKTGEEVPIHPRRVLTFRPSHLMKDKVAAGNKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MHV9</accession>
    <name>A0A1M5MHV9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Tungstate transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0839</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76875.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899535.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0839"/>
    <dbReference type="EnsemblBacteria" id="SHG76875">
        <property type="protein sequence ID" value="SHG76875"/>
        <property type="gene ID" value="SAMN05444003_0839"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="22"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="63"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="104"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="155"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="201"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="26"/>
            <end position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG76875.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="235" mass="24835" checksum="FF25F72E30DC8B0A" modified="2017-03-15" version="1">MQDFFDAFQQAFALIASGDPELIGIVLLSLRVSLTALILACIIGFPIGALLAVSNFPGRRAIILFFNAAMGLPPVVVGLTLYLLFSQAGPLAVLELLYTPTAMIIAQIVLITPIIISLTRGTIAGLLAEHGETLRAMRATRPQMVMTLLREAHPALLTTAVVGLGRAFAEVGAVMIVGGNINHVTRVMTTSIALETSRGELAMALALGIILLIIALFTNAAVYALAPRSRELAHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MLE2</accession>
    <name>A0A1M5MLE2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Large terminase phage packaging protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0898</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0898"/>
    <dbReference type="EnsemblBacteria" id="SHG78244">
        <property type="protein sequence ID" value="SHG78244"/>
        <property type="gene ID" value="SAMN05444003_0898"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035421">
        <property type="entry name" value="Terminase_6C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17289">
        <property type="entry name" value="Terminase_6C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Terminase_6C" evidence="1">
        <location>
            <begin position="256"/>
            <end position="407"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17289"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG78244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="425" mass="46778" checksum="C8544424EA5F52DE" modified="2017-03-15" version="1">MSEAQIKALPYLFEFWAMPHQLPPVGDWRTWVILGGRGAGKTRAGTEWVRSMVEGRTPLGEGKAKRVALVADTYDQARDMMVFGDSGIMAVSPPDRKPFWVATKRMLIWPNGAQAQLFTSQDPEGLRGPQFDAAWVDELAKWRNAQDTWDMLQFALRLGGDPKVCVTTTPKNVDVLKALLSRESTVSTHATTFANAANLAPGYLKEVRARYEGSRLGRQELDGVLLDDVEGALWKVDQLDALTTANLPEFSRIVVAVDPSVTSKKSADTCGIVVVGAVMEGEPHRWSAVVLADLSVGEATPTHWARAAVKGYHDFDADRLVAEVNQGGELVENVIWQVDPFVSYRAVHASRNKAVRAEPVAALYEQGRVRHVRGLGALEDQMCQMTARGYAGKGSPDRVDALVWALHDLMVEPLKTWVNPKIRGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MNN8</accession>
    <name>A0A1M5MNN8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Cytochrome b561</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0904</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78383.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899619.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0904"/>
    <dbReference type="EnsemblBacteria" id="SHG78383">
        <property type="protein sequence ID" value="SHG78383"/>
        <property type="gene ID" value="SAMN05444003_0904"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022904">
        <property type="term" value="P:respiratory electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.128.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011577">
        <property type="entry name" value="Cyt_b561_bac/Ni-Hgenase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016174">
        <property type="entry name" value="Di-haem_cyt_TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007372">
        <property type="entry name" value="Lipid/polyisoprenoid-bd_YceI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036761">
        <property type="entry name" value="TTHA0802/YceI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01292">
        <property type="entry name" value="Ni_hydr_CYTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04264">
        <property type="entry name" value="YceI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00867">
        <property type="entry name" value="YceI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101874">
        <property type="entry name" value="SSF101874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81342">
        <property type="entry name" value="SSF81342"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="16"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="55"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="96"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="152"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="200"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="domain" description="YceI" evidence="4">
        <location>
            <begin position="238"/>
            <end position="390"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00867"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG78383.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="395" mass="42592" checksum="FCB8AB1641853969" modified="2017-03-15" version="1">MSLANSQTHYGAVTKSFHWVTAVLILILMPLGSIANGAPFETSEELARKAWLFSLHKTLGVTVFFFALLRIAWALTQPKPSPLHPERKLETFAADVAHWLLYGSLVLVPLSGWIHHAATTGFAPIWWPFGQSLPFVPKDEDLAHLSGDIHWIWTKVLLFSLLAHIGGALKHVFIDRDETLKRMWFGTIGKLELPKTEKSVAPASLAVIIFAATGLFIATSSTTATAESETVLQQVASDWVVQDGTIEITVTQFGSPVTGGFEEWTASINYDPATKTGTVETTIAIDSLTLGSVTGQAMGADFFDSAKFPTGTFAADIAEIDGQLTATGTLTVKGATVPISLPFTLDIEGQTARMSGSTSINRLDFGVGASMPDETNLKFGVDIAVELTAERQQEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MU58</accession>
    <name>A0A1M5MU58_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1004</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899747.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG80439">
        <property type="protein sequence ID" value="SHG80439"/>
        <property type="gene ID" value="SAMN05444003_1004"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009912432" evidence="1">
        <location>
            <begin position="23"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG80439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="135" mass="14562" checksum="F1277606D8E3F4DF" modified="2017-03-15" version="1">MSKILKMSFILALAVGCSPSQNSIDLSTPAVQNILSQPFPEYAAKLRIAQQIAASCDRYDFNMDMQVALSAARPDTANGRLIEFRQVRGVELAKDVETRSFQAKHGVVVGVDNLCAAGDREVAEQTGISAFLQAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MUA1</accession>
    <name>A0A1M5MUA1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Hydroxymethylglutaryl-CoA lyase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1019</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the HMG-CoA lyase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80737.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1019"/>
    <dbReference type="EnsemblBacteria" id="SHG80737">
        <property type="protein sequence ID" value="SHG80737"/>
        <property type="gene ID" value="SAMN05444003_1019"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016833">
        <property type="term" value="F:oxo-acid-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043594">
        <property type="entry name" value="HMGL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000891">
        <property type="entry name" value="PYR_CT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42738">
        <property type="entry name" value="PTHR42738"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00682">
        <property type="entry name" value="HMGL-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50991">
        <property type="entry name" value="PYR_CT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0456">Lyase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyruvate carboxyltransferase" evidence="3">
        <location>
            <begin position="6"/>
            <end position="276"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG80737.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="295" mass="30678" checksum="54EB925EDFB88C47" modified="2017-03-15" version="1">MMSEFVTIHEMGPRDGLQNEPGAISVDDKVGLVNALADAGLRQIEVGSFVSPKWVPQMADTDKVTATLPALDGGQYDVLVPNMKGWEGFSRSSRQGTYGIAVFISASEGFSQANLNCSIAESVERLRPVVDVAVGAGVPVRGYVSCVTDCPFDGPVAPEAVADAAGVLRDSHDMPISLGDTIGKGTPDRIGAMLEAVLQAVPATNLAGHYHDTSGKALANIDVSLALGLRHFDSAVGGLGGCPYAPGAPGNVATEAVVAHLHAKGYQTGVDPERLRHAALLAQTIKRNARENAQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MV41</accession>
    <name>A0A1M5MV41_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Acetylornithine deacetylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1040</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase M20A family. ArgE subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81168.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899779.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1040"/>
    <dbReference type="EnsemblBacteria" id="SHG81168">
        <property type="protein sequence ID" value="SHG81168"/>
        <property type="gene ID" value="SAMN05444003_1040"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008777">
        <property type="term" value="F:acetylornithine deacetylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006526">
        <property type="term" value="P:arginine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010169">
        <property type="entry name" value="AcOrn-deacetyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001261">
        <property type="entry name" value="ArgE/DapE_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036264">
        <property type="entry name" value="Bact_exopeptidase_dim_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002933">
        <property type="entry name" value="Peptidase_M20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011650">
        <property type="entry name" value="Peptidase_M20_dimer"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07687">
        <property type="entry name" value="M20_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01546">
        <property type="entry name" value="Peptidase_M20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55031">
        <property type="entry name" value="SSF55031"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01892">
        <property type="entry name" value="AcOrn-deacetyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00759">
        <property type="entry name" value="ARGE_DAPE_CPG2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="2" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="M20_dimer" evidence="4">
        <location>
            <begin position="170"/>
            <end position="284"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF07687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG81168.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="384" mass="41273" checksum="EE2439100BF59AB9" modified="2017-03-15" version="1">MTARELLDRLIGFPTVSSNSNLDLIGFVEQYLDDFGIKSTRVPNEDGTKSSIYASVGPEVEGGIVLSGHTDVVPVEGQAWDTDPFSVVEKDGKLFGRGTCDMKGFDALALAMVPHAVKADLKRPLQIALSYDEEVGCLGAPPMIDHMVSHGLPRASSVIVGEPSMMQVVTGHKGGLGYNVHFHGFEVHSSIAYQGVSAIMMAAKLVDWCNQMNDANAAATPSALAAQFDPPYTSLHVGMISGGTAHNITAKDCEFGMNFRFVPGDSPEGWKKRFFDKIAELDAEMKAVVPSTGITTEEFFSLTPLTPEENGSAEELARRLTGDNGSHVVSYGTEAGQFQERGYSAVVCGPGDIAQAHQPNEFITVDQFEKGEAFLKQVVHQLTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MZ25</accession>
    <name>A0A1M5MZ25_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Inner membrane-spanning protein YciB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">yciB</name>
        <name evidence="2" type="ORF">SAMN05444003_1104</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Plays a role in cell envelope biogenesis, maintenance of cell envelope integrity and membrane homeostasis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the YciB family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82560.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899832.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1104"/>
    <dbReference type="EnsemblBacteria" id="SHG82560">
        <property type="protein sequence ID" value="SHG82560"/>
        <property type="gene ID" value="SAMN05444003_1104"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00189">
        <property type="entry name" value="YciB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006008">
        <property type="entry name" value="YciB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36917">
        <property type="entry name" value="PTHR36917"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04279">
        <property type="entry name" value="IspA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="41"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="72"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="102"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="139"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="166"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG82560.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="201" mass="23162" checksum="C6F546BEBB60FF95" modified="2017-03-15" version="1">MSEQPVNPWIKQLLELGPTIAFFVLYLRIKDDTYTIGETEYSGFIIATLVFVPILLVAMGILWAMTKQLSRMQIFTAFMVVFFGGLTAYFNDERFFKMKTSIVYGSFAAILGIGLWRGQSFLEWVMGDAMPMRQEGWMILTKRVTAMFAFLAVANEVIWRTQSTELWVTLETFAFPAAMFAFLMWQIMALQQYLIEPEDDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N205</accession>
    <name>A0A1M5N205_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Capsular polysaccharide export protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1147</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83606.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899870.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1147"/>
    <dbReference type="EnsemblBacteria" id="SHG83606">
        <property type="protein sequence ID" value="SHG83606"/>
        <property type="gene ID" value="SAMN05444003_1147"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000271">
        <property type="term" value="P:polysaccharide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015774">
        <property type="term" value="P:polysaccharide transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007833">
        <property type="entry name" value="Capsule_polysaccharide_synth"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05159">
        <property type="entry name" value="Capsule_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG83606.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="436" mass="50001" checksum="42F6A2312E5795EA" modified="2017-03-15" version="1">MQEHQSAIVTDQTLRHFLFLQGPHGPFFSQLAKMLQRTSAKTSRIGFNAGDRAFWRDKGSFTAFQNPHADWPAFLEDYVESEKVTDIVLYGDVRPIHAEALAMARTKGIRAHTFEEGYLRPYWVTYERGGTNGHSRLMRMSVAEMSAKLDQSDADTETPPAHWGDMRQHIFYSAIYHWFLLAFRGRYENYQGHRKQPLSVETLAYTKRLVLMPFFAVDRWQATQRIRMGGYPYHLALLQLEHDASFQAHSTLKDNEEFIDILMQGFAEGAPAHHHLVFKAHPLEAERVPLKQVIRNLSAKHSIKDRVHYVRGGKLAQILDHAKSAVTVNSTSAQQALWRGMPLKTFGTSVYAKPEFTSQQPLAEFFNQPSAPNLDGYKAYRKYLLSTCQVPGGYYSRKGRRQLLREVVDMMLSATDPYDALRQSDDTPRHPLRVAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N483</accession>
    <name>A0A1M5N483_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1156</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83813.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899877.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG83813">
        <property type="protein sequence ID" value="SHG83813"/>
        <property type="gene ID" value="SAMN05444003_1156"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG83813.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="184" mass="19826" checksum="F9A1974B792505B0" modified="2017-03-15" version="1">MDDAPALAAFRGRFTSVAASVFLTCLGSAAVAQCDADQELYFSCSFSEGAKAVHVCENPASVTYQFGPTGEAPELMLSENVQDVDYTPWPGIGTTIWEEVVFESQDYRYVVYAALVRSFPENETDDITVTPTGGITVLNGETEIANLRCDEGSAEFPWGSGIYDAKTSLGFCFDVSDGWSACTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N661</accession>
    <name>A0A1M5N661_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 7">Polyphosphate kinase</fullName>
            <ecNumber evidence="6 7">2.7.4.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">ATP-polyphosphate phosphotransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Polyphosphoric acid kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">ppk</name>
        <name evidence="12" type="ORF">SAMN05444003_1206</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 7">Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6 7">
            <text>[phosphate](n) + ATP = [phosphate](n+1) + ADP</text>
            <dbReference type="Rhea" id="RHEA:19573"/>
            <dbReference type="Rhea" id="RHEA-COMP:9859"/>
            <dbReference type="Rhea" id="RHEA-COMP:14280"/>
            <dbReference type="ChEBI" id="CHEBI:16838"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="PTM">
        <text evidence="6 7">An intermediate of this reaction is the autophosphorylated ppk in which a phosphate is covalently linked to a histidine residue through a N-P bond.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6 7">Belongs to the polyphosphate kinase 1 (PPK1) family.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.1" evidence="6 7"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84955.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899920.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1206"/>
    <dbReference type="EnsemblBacteria" id="SHG84955">
        <property type="protein sequence ID" value="SHG84955"/>
        <property type="gene ID" value="SAMN05444003_1206"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009358">
        <property type="term" value="C:polyphosphate kinase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008976">
        <property type="term" value="F:polyphosphate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006799">
        <property type="term" value="P:polyphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1840.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00347">
        <property type="entry name" value="Polyphosphate_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003414">
        <property type="entry name" value="PP_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041108">
        <property type="entry name" value="PP_kinase_C_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024953">
        <property type="entry name" value="PP_kinase_middle"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036830">
        <property type="entry name" value="PP_kinase_middle_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025200">
        <property type="entry name" value="PPK_C_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025198">
        <property type="entry name" value="PPK_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036832">
        <property type="entry name" value="PPK_N_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30218">
        <property type="entry name" value="PTHR30218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02503">
        <property type="entry name" value="PP_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13090">
        <property type="entry name" value="PP_kinase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17941">
        <property type="entry name" value="PP_kinase_C_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13089">
        <property type="entry name" value="PP_kinase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015589">
        <property type="entry name" value="PP_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140356">
        <property type="entry name" value="SSF140356"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03705">
        <property type="entry name" value="poly_P_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 6 12" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="1 6 7" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PP_kinase_N" evidence="9">
        <location>
            <begin position="27"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="domain" description="PP_kinase" evidence="8">
        <location>
            <begin position="144"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="domain" description="PP_kinase_C_1" evidence="11">
        <location>
            <begin position="344"/>
            <end position="509"/>
        </location>
    </feature>
    <feature type="domain" description="PP_kinase_C" evidence="10">
        <location>
            <begin position="516"/>
            <end position="684"/>
        </location>
    </feature>
    <feature type="active site" description="Phosphohistidine intermediate" evidence="6">
        <location>
            <position position="448"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="65"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="388"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="418"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="481"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="577"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="605"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003800"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02503"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF13089"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF13090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF17941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG84955.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="722" mass="80744" checksum="7438C56EE01D8570" modified="2017-03-15" version="1">MMEADFLEGPFPAPMTLDMDLTGPNRFVNRELSWLGFNWRVLEEAENPRVPLLERLRFLSISATNLDEFFTVRVAGLKELVHEGNANPSIDGLTPAQQLELINADARKLMARQQEVLKALRAEMAEAGISILASDDLGQEDVVFLENVFLDRVFPVLSPLAIDPAHPFPFLPNEGFALALQLERVKDKKPLFALLPVPAQIDRFVRLPGEGEIRVLPLEELLLLYVSRLYPGHKMKGSCAFKLLRDSDLEVEDEAEDLVREFETALKRRRRGEVVRLKMSANAPKALTKLIMQELRVTGDEVVEVEGLIGVADLKELVLDERPDLLWPSFSPRVPERVQDFEGDMFAAIRNKDLLLHHPYETFDMVVRFLRQAARDPDVVAIKQTLYRTSNRSPIVEALCEAAEDGKSVTALVELKARFDEAANIRQSRRLERSGAHVVYGFINYKTHAKISTVVRREGDKLVTYTHFGTGNYHPITAKIYTDLSFFTCDADLGRDATKVFNYLSGYAQPEGLQNLAIAPSMMKKNLIEMIEHEAENARAGKPGAIWAKMNSLIEKDVIDALYSASQAGVKISLVVRGICGLRPGVVGLSENIRVKSVVGRFLEHSRIVCFANGKNLPSKKARVFISSADWMSRNLNRRVETLIEINNATVKAQIISQIMAANLHDVAQSWVMIGDGSFKRADVPDGSFAFNCHRFFMENPSLSGRGSAGAADVPRLTHTDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N6Y5</accession>
    <name>A0A1M5N6Y5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Lipoprotein-releasing system ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1198</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84773.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899913.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1198"/>
    <dbReference type="EnsemblBacteria" id="SHG84773">
        <property type="protein sequence ID" value="SHG84773"/>
        <property type="gene ID" value="SAMN05444003_1198"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042953">
        <property type="term" value="P:lipoprotein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03255">
        <property type="entry name" value="ABC_MJ0796_LolCDE_FtsE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015854">
        <property type="entry name" value="ABC_transpr_LolD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017911">
        <property type="entry name" value="MacB_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24220:SF654">
        <property type="entry name" value="PTHR24220:SF654"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="5"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="42"/>
            <end position="49"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG84773.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="227" mass="24183" checksum="E3463E13F243F544" modified="2017-03-15" version="1">MSEVLKLSGITKSYNTGKPNEVQVLQGADLTVAEGEVVALVAPSGAGKSTLLHIAGLLDVADSGKVQIKGQDMTLKSDRKRTATRREDVGFIYQFHHLLPEFTALENIVLPQLANGVSERDAEARARSLLDTVGVGERAGHRPAALSGGEQQRVAYCRALANEPSLLLADEPTGNLDPGTSDRVFEALMSLVKGTGMSALIATHNLELAARMGRMVRLTDGRLVEEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N9K3</accession>
    <name>A0A1M5N9K3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">5-bromo-4-chloroindolyl phosphate hydrolysis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1261</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86177.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899966.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1261"/>
    <dbReference type="EnsemblBacteria" id="SHG86177">
        <property type="protein sequence ID" value="SHG86177"/>
        <property type="gene ID" value="SAMN05444003_1261"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018770">
        <property type="entry name" value="ChloroindolylP_hydrolase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10112">
        <property type="entry name" value="Halogen_Hydrol"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="58"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="98"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="123"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG86177.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="295" mass="32528" checksum="8A7309A9B88BE6FD" modified="2017-03-15" version="1">MAKRFGGKYSPDGSNDGSEAAQKAVFDERVVDAAGARANILFLPGILLLFTSLNDGPFVLVLALIGAGILTLAAWLLREGLRAEAAYNARKVARRPSIPRKMFASALTGIGIGIAAYSGDSGVIGSVLYGAIATALHVAAFGIDPLKDKGMEGIDTFQQDRVARVVDEADEHLQDMQTQIERLRDRQLENRVSAFQATARRMIRTVEEDPRDLTAARKYLGVYLRGARDATVKFVDLYERKPDPDARANYEALLEDLEQNFAARTEKMLLDDRSDMDIEIKVLRDRLQREGVSLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NAU9</accession>
    <name>A0A1M5NAU9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Methionine--tRNA ligase</fullName>
            <ecNumber evidence="9">6.1.1.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Methionyl-tRNA synthetase</fullName>
            <shortName evidence="9">MetRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">metG</name>
        <name evidence="13" type="ORF">SAMN05444003_1286</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 9">Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>ATP + L-methionine + tRNA(Met) = AMP + diphosphate + L-methionyl-tRNA(Met)</text>
            <dbReference type="Rhea" id="RHEA:13481"/>
            <dbReference type="Rhea" id="RHEA-COMP:9667"/>
            <dbReference type="Rhea" id="RHEA-COMP:9698"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78530"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.10"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="9">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 1 subfamily.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.10" evidence="9"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899989.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1286"/>
    <dbReference type="EnsemblBacteria" id="SHG86611">
        <property type="protein sequence ID" value="SHG86611"/>
        <property type="gene ID" value="SAMN05444003_1286"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004825">
        <property type="term" value="F:methionine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006431">
        <property type="term" value="P:methionyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07957">
        <property type="entry name" value="Anticodon_Ia_Met"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00814">
        <property type="entry name" value="MetRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.28.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00098">
        <property type="entry name" value="Met_tRNA_synth_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041872">
        <property type="entry name" value="Anticodon_Met"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023458">
        <property type="entry name" value="Met-tRNA_ligase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014758">
        <property type="entry name" value="Met-tRNA_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015413">
        <property type="entry name" value="Methionyl/Leucyl_tRNA_Synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033911">
        <property type="entry name" value="MetRS_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029038">
        <property type="entry name" value="MetRS_Zn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009080">
        <property type="entry name" value="tRNAsynth_Ia_anticodon-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45765">
        <property type="entry name" value="PTHR45765"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19303">
        <property type="entry name" value="Anticodon_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09334">
        <property type="entry name" value="tRNA-synt_1g"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01041">
        <property type="entry name" value="TRNASYNTHMET"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47323">
        <property type="entry name" value="SSF47323"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57770">
        <property type="entry name" value="SSF57770"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00398">
        <property type="entry name" value="metG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9 10" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="6 9 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 9 10" id="KW-0436">Ligase</keyword>
    <keyword evidence="9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 9 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7 9 10" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="tRNA-synt_1g" evidence="11">
        <location>
            <begin position="4"/>
            <end position="407"/>
        </location>
    </feature>
    <feature type="domain" description="Anticodon_3" evidence="12">
        <location>
            <begin position="419"/>
            <end position="570"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region" evidence="9">
        <location>
            <begin position="11"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="9">
        <location>
            <begin position="344"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="143"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="146"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="156"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="159"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="347"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003314"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008258"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU363039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF09334"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF19303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHG86611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="570" mass="63859" checksum="F97245F92B8460A2" modified="2017-03-15" version="1">MARHLITSAIPYINGIKHLGNLVGSQLPADLYARYLRGRGNEVLFLCATDEHGTPAELAAAKAGKPVAEYCAEMHSVQAEIADGFGLSFDHFGRSSSPQNHALTQAFAGRLNDMGLIREVVEEQVYSHTDGRFLPDRYIEGTCPNCGFESARGDQCDNCTKQLDPTDLINPYSTISGATDLEVRETKHLYLRQSALKDHIAKWIDSKADWPILTTSIAKKWLNDGDGLQDRGITRDLDWGVPVKQGDQDWPGMEGKVFYVWFDAPIEYIACSQEWVDAGKGSDWEHWWRTDKGADDVTYTQFMGKDNVPFHTLSFPATILGSQEPWKLVDYIKSFNYLNYDGGQFSTSRGRGVFMDQALEILPADYWRWWLLSHAPETSDAEFTWEAFQQDVNKDLADVLGNFVSRVTKFCRSKFGEAVPSGGSYGAQEEALIADLDKRLVAYQTHMDAIDVRKAAAELRAIWVAGNEYLQSAAPWAVFKEDPDQAAAQIRLALNLIRLYAVLSAPFIPTTAATLFKDMNTLDTEWPSDMATALSALPEGHEFTVPENLFAKITDDQREEWSERFAGTRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NBX5</accession>
    <name>A0A1M5NBX5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">8-oxo-dGTP pyrophosphatase MutT, NUDIX family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1279</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86493.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899983.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1279"/>
    <dbReference type="EnsemblBacteria" id="SHG86493">
        <property type="protein sequence ID" value="SHG86493"/>
        <property type="gene ID" value="SAMN05444003_1279"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039121">
        <property type="entry name" value="NUDT19"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12318">
        <property type="entry name" value="PTHR12318"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="6">
        <location>
            <begin position="6"/>
            <end position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG86493.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="225" mass="24922" checksum="887F9C2A71C3B1BA" modified="2017-03-15" version="1">MTSNVPIRDAATVIVLRDQATDPKVLMGQRGKTAVFMPGKFVFPGGAIDQNDHQVPVHGLPADTTAQLNEESLIPAHAIAAAAVRELWEETGQILGQHGEWTDAPQGWRGFAKSGHVPFAPFEFFFRAVTPEGRPRRFDARFLLLEAEHLQSDIDDFSLAEDELSHLQWVPLHSVRQFNLPFITKVVLAELEDRVANGPAGRAVPFFRNDDEDRLVSRIGGAWPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NC40</accession>
    <name>A0A1M5NC40_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">N-acetyltransferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1317</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87061.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900016.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1317"/>
    <dbReference type="EnsemblBacteria" id="SHG87061">
        <property type="protein sequence ID" value="SHG87061"/>
        <property type="gene ID" value="SAMN05444003_1317"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045057">
        <property type="entry name" value="Gcn5-rel_NAT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031165">
        <property type="entry name" value="GNAT_YJDJ"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31435">
        <property type="entry name" value="PTHR31435"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14542">
        <property type="entry name" value="Acetyltransf_CG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51729">
        <property type="entry name" value="GNAT_YJDJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="9"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG87061.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="97" mass="10466" checksum="0875DA2609B9824A" modified="2017-03-15" version="1">MSDLAIKKEAGDTKGRYVIEHADGATSELTFSILSKANVIADHTGVAPAHEGQGYGKALAEALVNDARAEGFQIVPLCSYINALRRRHPDWADVFQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NCW9</accession>
    <name>A0A1M5NCW9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ATP-dependent helicase Lhr and Lhr-like helicase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1334</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87341.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900030.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1334"/>
    <dbReference type="EnsemblBacteria" id="SHG87341">
        <property type="protein sequence ID" value="SHG87341"/>
        <property type="gene ID" value="SAMN05444003_1334"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016818">
        <property type="term" value="F:hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013701">
        <property type="entry name" value="DEAD/DEAH_assoc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026362">
        <property type="entry name" value="DEXH_lig_assoc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017170">
        <property type="entry name" value="Lhr-like_ATP-dep_RNA_helic_prd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045628">
        <property type="entry name" value="Lhr_WH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08494">
        <property type="entry name" value="DEAD_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19306">
        <property type="entry name" value="Lhr_WH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037307">
        <property type="entry name" value="Lhr-like_helic_prd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04121">
        <property type="entry name" value="DEXH_lig_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0347">Helicase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="1">
        <location>
            <begin position="26"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="2">
        <location>
            <begin position="235"/>
            <end position="388"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG87341.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="813" mass="90174" checksum="FC802ADF6ABEE6CA" modified="2017-03-15" version="1">MTPLPPEFSDWFANRGWSIHPHQKEMLDRAQDPSLLLIAPTGGGKTLSGFLPSLIELADGAHEGLHTLYVSPLKALASDIKRNLRTPVEEMDLPIRIEDRTGDTSYTQKRRQRADPPHILLTTPESLALLTSYEDAPKIFKGLQRVIVDEIHALEESKRGDQLMLALGRLQTLAPNLRRVGLSATVEDPKAIAHSLACHPEPCDILYADPGPDPDIQMLTTEEHPPWAGGGAAYAIPAVLEEVKKHKTTLIFHNTRAQAELFFHNLWLANTDDLPIGIHHGALDRSQREKVEAAMVSGDLRAIVCTGSLDLGIDWGDVDLVIQIGAPKNVKRLVQRIGRANHRYNAPSKALMVPANRFEVVECLAALDAVKEHDLDGDPKGPGPRDVLCQHILIAACVGPFSADALYQEVTSVGAYSALTRAEFDDCLEFCATGGYALRAYDKWKRLLEKDGHWQLRDPRAARNIRMNIGTIQDTDTLKVKFKNAYKPIGEIEEGFAATLTPGDTFLIGGQIVRYDGMRELTVQVTRDAAKKPKIATFMGTKFATSTQLQHRILRKLQTGNWSNYPQHTTDWLTLQTRHSQLPEADRILVESFAHDARPHTVFYGFAGRNAMQTLGLLLTQRMEEQGLGPLGFVATDYATMIWSVSPVTDPAPLFEPQGLRDGLDTWLSGNAVMKKTFRASATIAGLIERNSPQARKTGRQATFSSDILYDTLHKYDPNHLMMQITREEAMRGLVDFGRIEEMLDRTQGRVDHIALSRVSPLAAPLLLEVGRVAVHGEGREQLMEKEAAALMEASGLNQIDTSPSKPRWRVGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NF32</accession>
    <name>A0A1M5NF32_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Catechol 2,3-dioxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1375</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88075.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900067.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1375"/>
    <dbReference type="EnsemblBacteria" id="SHG88075">
        <property type="protein sequence ID" value="SHG88075"/>
        <property type="gene ID" value="SAMN05444003_1375"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="1"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG88075.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="138" mass="14721" checksum="EDAC6288299613A8" modified="2017-03-15" version="1">MISYVTVGVDDMALAKAFYSAFLPDLGYTLEEGPEGLSWELPVPKGQKPISPDFYVKPTFDGKPASSGNGSMVAFEASGQQQVRDIHAAALSAGGSNEGSPGFRDIYGPRFFVGYLRDPPGNKIAIFSSNPNEPGRDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NF57</accession>
    <name>A0A1M5NF57_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">30S ribosomal protein S4</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rpsD</name>
        <name evidence="11" type="ORF">SAMN05444003_1379</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.</text>
    </comment>
    <comment type="function">
        <text evidence="6">With S5 and S12 plays an important role in translational accuracy.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Part of the 30S ribosomal subunit. Contacts protein S5. The interaction surface between S4 and S5 is involved in control of translational fidelity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the universal ribosomal protein uS4 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88151.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900071.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1379"/>
    <dbReference type="EnsemblBacteria" id="SHG88151">
        <property type="protein sequence ID" value="SHG88151"/>
        <property type="gene ID" value="SAMN05444003_1379"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015935">
        <property type="term" value="C:small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00165">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01306_B">
        <property type="entry name" value="Ribosomal_S4_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022801">
        <property type="entry name" value="Ribosomal_S4/S9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001912">
        <property type="entry name" value="Ribosomal_S4/S9_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005709">
        <property type="entry name" value="Ribosomal_S4_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018079">
        <property type="entry name" value="Ribosomal_S4_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002942">
        <property type="entry name" value="S4_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036986">
        <property type="entry name" value="S4_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11831">
        <property type="entry name" value="PTHR11831"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11831:SF4">
        <property type="entry name" value="PTHR11831:SF4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00163">
        <property type="entry name" value="Ribosomal_S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01479">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01390">
        <property type="entry name" value="Ribosomal_S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00363">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01017">
        <property type="entry name" value="rpsD_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00632">
        <property type="entry name" value="RIBOSOMAL_S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 6 7" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 6" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="Ribosomal_S4" evidence="10">
        <location>
            <begin position="3"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="domain" description="S4" evidence="9">
        <location>
            <begin position="94"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="19"/>
            <end position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007465"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM00363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM01390"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG88151.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="206" mass="23580" checksum="CE158FD31939019A" modified="2017-03-15" version="1">MTKRTAAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGLQLRAKQKLKGYYGDLTEKQFRRIYAEAERVKGDTGENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGHVEVNGKKVNIPSYRVKEGDVISVRQKSKQLELVLVASQLPERDVPDYMAVDHSKMSCEFVRTPGLGDVPYPVAMEPNLVVEFYAKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NFJ9</accession>
    <name>A0A1M5NFJ9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transporter family-2 protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1388</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88310.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900079.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG88310">
        <property type="protein sequence ID" value="SHG88310"/>
        <property type="gene ID" value="SAMN05444003_1388"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006750">
        <property type="entry name" value="YdcZ"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34821">
        <property type="entry name" value="PTHR34821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04657">
        <property type="entry name" value="DMT_YdcZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="36"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="66"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="92"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="119"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG88310.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="144" mass="15238" checksum="9ED50AB33CFBB489" modified="2017-03-15" version="1">MIPFVLMAFTAGLLIGLSRQLNGRLSLSTSAMEASFWNHIVGAIFLTLAAFALGGLFEGDLENIPLWAYLGGPIGVIFIAASSWLITRIGAVSTTMLIIAGQMIFGILLDMIRGVPGDLTIRILGTALILGGMWLLHRPAKAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NGU1</accession>
    <name>A0A1M5NGU1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Aspartate--tRNA(Asp/Asn) ligase</fullName>
            <ecNumber evidence="7">6.1.1.23</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Aspartyl-tRNA synthetase</fullName>
            <shortName evidence="7">AspRS</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Non-discriminating aspartyl-tRNA synthetase</fullName>
            <shortName evidence="7">ND-AspRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">aspS</name>
        <name evidence="9" type="ORF">SAMN05444003_1395</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>ATP + L-aspartate + tRNA(Asx) = AMP + diphosphate + L-aspartyl-tRNA(Asx)</text>
            <dbReference type="Rhea" id="RHEA:18349"/>
            <dbReference type="Rhea" id="RHEA-COMP:9710"/>
            <dbReference type="Rhea" id="RHEA-COMP:9711"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78516"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.23"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.23" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900085.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1395"/>
    <dbReference type="EnsemblBacteria" id="SHG88439">
        <property type="protein sequence ID" value="SHG88439"/>
        <property type="gene ID" value="SAMN05444003_1395"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004815">
        <property type="term" value="F:aspartate-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050560">
        <property type="term" value="F:aspartate-tRNA(Asn) ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006422">
        <property type="term" value="P:aspartyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00044">
        <property type="entry name" value="Asp_tRNA_synth_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004364">
        <property type="entry name" value="Aa-tRNA-synt_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004524">
        <property type="entry name" value="Asp-tRNA-ligase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002312">
        <property type="entry name" value="Asp/Asn-tRNA-synth_IIb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004115">
        <property type="entry name" value="GAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004365">
        <property type="entry name" value="NA-bd_OB_tRNA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22594:SF5">
        <property type="entry name" value="PTHR22594:SF5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00152">
        <property type="entry name" value="tRNA-synt_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01336">
        <property type="entry name" value="tRNA_anti-codon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01042">
        <property type="entry name" value="TRNASYNTHASP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55261">
        <property type="entry name" value="SSF55261"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00459">
        <property type="entry name" value="aspS_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7 9" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="4 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 7" id="KW-0436">Ligase</keyword>
    <keyword evidence="3 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 7" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AA_TRNA_LIGASE_II" evidence="8">
        <location>
            <begin position="142"/>
            <end position="586"/>
        </location>
    </feature>
    <feature type="region of interest" description="Aspartate" evidence="7">
        <location>
            <begin position="199"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="175"/>
        </location>
        <ligand>
            <name>L-aspartate</name>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="221"/>
            <end position="223"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="221"/>
        </location>
        <ligand>
            <name>L-aspartate</name>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="480"/>
        </location>
        <ligand>
            <name>L-aspartate</name>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="513"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="520"/>
        </location>
        <ligand>
            <name>L-aspartate</name>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="565"/>
            <end position="568"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="site" description="Important for tRNA non-discrimination" evidence="7">
        <location>
            <position position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG88439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="619" mass="69501" checksum="EBCD34E66690F2F6" modified="2017-03-15" version="1">MHAYRSHSCAELTSAEVGQTVRLSGWVNRVRDHGGVLFIDLRDHYGMTQVLCDPDSPVFADVEKVRSEWCIRIDGEVKARDADLVNPKIPTGQIEVFIRDMEVLGASKELPLMVFGDQEYPEETRLKYRYLDLRREAMQENMKLRSDVVASIRKRMWDNDFREYQTPIITASSPEGARDFLVPSRLHPGKFYALPQAPQQFKQLIMVSGYDKYFQIAPCFRDEDPRADRSPTDFYQLDMEMSFVEQQDVFDTIAPVIAGVFEEFGGGRKVDAPAEWEQISYRDAALWYGSDKPDLRNPIKMQVVSDHFRGSGFAIFAKLLEQDGTEVRAIPAPTGGSRKFCDRMNAYAQKEGLPGMGYIFWREKTADAVAQELGITVKEAQAKLKSGEVEGGMEAAGPLAKNIGPERTEAIRQQLGLGLGDAAFFLGGKPKTFEAIAGRARNVIGAELGLIDEDRFAFAWIVDFPIYERDEETGEIDFEHNPFSMPQGGMDALKGDPEDVLGYQYDLACNGYELVSGAIRNHRPEIMFKAFEIAGYGADQVEKRFGGMVNAFQYGAPPHGGCAAGIDRIVMLLADAENIREVIMFPMNQRAEDLMMGAPSEPMNEQLRELRLRVLPPED</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NN56</accession>
    <name>A0A1M5NN56_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Modulator of drug activity B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1495</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90619.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900172.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1495"/>
    <dbReference type="EnsemblBacteria" id="SHG90619">
        <property type="protein sequence ID" value="SHG90619"/>
        <property type="gene ID" value="SAMN05444003_1495"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003680">
        <property type="entry name" value="Flavodoxin_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02525">
        <property type="entry name" value="Flavodoxin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavodoxin_2" evidence="1">
        <location>
            <begin position="18"/>
            <end position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG90619.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="202" mass="22204" checksum="A843E68AF8DF5920" modified="2017-03-15" version="1">MSNIFILNGAQPYPFAPGALNEAFATRTEAVLKALGHDLRLTKVAEGYDVEEEIANHQWADTIIMQFPVNWMGVPWSFKKYMDEVYTAGMDGRLCNGDGRSPDAPKANYGMGGALTGTRYMISTTLNAPSEAFDDSSEPFFEGASIDDLLRPVHLNAKFFGMTPLPTFSAHDVMKNPNVTADFARFDTHLTTHFGDTSHVAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NP42</accession>
    <name>A0A1M5NP42_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1524</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91300.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG91300">
        <property type="protein sequence ID" value="SHG91300"/>
        <property type="gene ID" value="SAMN05444003_1524"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG91300.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="60" mass="7026" checksum="D247645ECD509C20" modified="2017-03-15" version="1">MCFLIADALHQFRTYYHRQLRVESCAWLLMHEQNSWTAQEGDLAQSCRKLFPNIPSGTPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NQA8</accession>
    <name>A0A1M5NQA8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Predicted enzyme of the cupin superfamily</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1542</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91700.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900211.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1542"/>
    <dbReference type="EnsemblBacteria" id="SHG91700">
        <property type="protein sequence ID" value="SHG91700"/>
        <property type="gene ID" value="SAMN05444003_1542"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008579">
        <property type="entry name" value="UGlyAH_Cupin_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05899">
        <property type="entry name" value="Cupin_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cupin_3" evidence="1">
        <location>
            <begin position="51"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG91700.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="234" mass="25345" checksum="A0F76156F41FD6D3" modified="2017-03-15" version="1">MTKTANIIRFDPNGPDGLEVWEQMDYASLVSGEPVQRGHLYHEIEGEGYMAGVWDCTAFVDQMMPYPVDEYMLLLKGSVIMVLPDGTEIEVKAGDAFVIPKGFMCQWKQPELVLKYFMILDGPTPTAENASLQRIAVPDLTGPSADVADRRTDFLNAAGTMSVDLVTYGAVQMPAAPASKHQLISVLDGALALHDGEEAHSFAAGETAYLHQGDSAGWTTSEGTRLLIASYTSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NRI5</accession>
    <name>A0A1M5NRI5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Spermidine/putrescine import ATP-binding protein PotA</fullName>
            <ecNumber evidence="8">7.6.2.11</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">potA</name>
        <name evidence="10" type="ORF">SAMN05444003_1535</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">The complex is composed of two ATP-binding proteins (PotA), two transmembrane proteins (PotB and PotC) and a solute-binding protein (PotD).</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.</text>
    </comment>
    <dbReference type="EC" id="7.6.2.11" evidence="8"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91533.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900208.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1535"/>
    <dbReference type="EnsemblBacteria" id="SHG91533">
        <property type="protein sequence ID" value="SHG91533"/>
        <property type="gene ID" value="SAMN05444003_1535"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015417">
        <property type="term" value="F:ABC-type polyamine transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005893">
        <property type="entry name" value="Sp_pt_ABC_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013611">
        <property type="entry name" value="Transp-assoc_OB_typ2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08402">
        <property type="entry name" value="TOBE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01187">
        <property type="entry name" value="potA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 7 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-1278">Translocase</keyword>
    <keyword evidence="1 8" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="9">
        <location>
            <begin position="22"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="54"/>
            <end position="61"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU364083"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG91533.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="380" mass="41919" checksum="8C72A71F6EE3B3EB" modified="2017-03-15" version="1">MAAIDAFSDTPWLDPAGQKPLVQIKGLTKSFGAFTAIDNIDLDIYQGELFCLLGGSGCGKSTLLRMLAGFETPNGGEILIDGVDMAHVPAYERPTNMMFQSYALFPHMTVEKNIAFGLQQDGVGKSEIKDRVHDILTLVELQDYKKRKPQQLSGGQRQRVALARALVKQPKLLLLDEPLAALDKKLRKQTQFELANIQEQVGVTFIVVTHDQEEAMTLSTRMAVMDAGRFKQIGTPTEIYEFPDSRFVADFIGSANIFEGRVVEDSADHILVTTEACDVFIDHGQSVKIDSRIWVGLRPEKIRIEKSEAAASGPNQISGIVDDVGYLGETSIYKVKLESGQIVDVAAPNQMRPSSNSDRITWDDKVLLSWEPSNAMLLSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NS56</accession>
    <name>A0A1M5NS56_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1571</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG92434.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1571"/>
    <dbReference type="EnsemblBacteria" id="SHG92434">
        <property type="protein sequence ID" value="SHG92434"/>
        <property type="gene ID" value="SAMN05444003_1571"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="20"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG92434.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="343" mass="37196" checksum="01A525FE9EBCE861" modified="2017-03-15" version="1">MNPLMILIGLLGAIFAMGGGSSSDKESGSAEGDAIPTSVSIDEDTEGEDDDGSKQDHGSHGGSDAAYVDITEFGTHHGTSSHTHVESLEGGRTPITTEAQVAYNGLRDFLGLKPVSLEEVGEWAFDQGLTNNEEAYGDDIPGVGLYYSMQGAKVGWIADDAFDPQILADIQLAAREVEVGEVLVMVEAYGLEGFDRYLEENGLVNEFVNTLKMEPHYGGWMHGRVHGWRDFEDASGKDVAIAHDLNHLTVLSHDQTQPFMNDTFDWPQWPALDVPQADVANYFQSMVTLGDPEGEGIAEGLVKKAAVEEVDGETLMASLAVDQEHADYGFEDGETYEDVMMMH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NTA1</accession>
    <name>A0A1M5NTA1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1587</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG92844.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900255.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1587"/>
    <dbReference type="EnsemblBacteria" id="SHG92844">
        <property type="protein sequence ID" value="SHG92844"/>
        <property type="gene ID" value="SAMN05444003_1587"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013216">
        <property type="entry name" value="Methyltransf_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08241">
        <property type="entry name" value="Methyltransf_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransf_11" evidence="1">
        <location>
            <begin position="81"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG92844.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="259" mass="28697" checksum="A8695F0088434231" modified="2017-03-15" version="1">MHLDVLDLRNFYYRSALGRSAQHVIRSELTELWPEAKGQTVAGYGFAVPMLRPYLPDARRVIGLMPGPQGVMPWPPQLPNVSVLCEETNWPISTGQIDKLVVMHGLETSENPSALLDECWRVLGPGGRVIFIVPNRAGLWSRSDNTPFGYGRPYSMSQLEAQLRRHQFVTERSVSALYQPPSHKRIWRKFTAFMERVGHNLPVVKAGGVLIVEASKQSVAPISGLRETVKRPLKALEGMAAPVPGTAGARGVPRTKNDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NVU2</accession>
    <name>A0A1M5NVU2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative ABC transport system ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1622</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93694.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900285.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1622"/>
    <dbReference type="EnsemblBacteria" id="SHG93694">
        <property type="protein sequence ID" value="SHG93694"/>
        <property type="gene ID" value="SAMN05444003_1622"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03255">
        <property type="entry name" value="ABC_MJ0796_LolCDE_FtsE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017911">
        <property type="entry name" value="MacB_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="6"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="42"/>
            <end position="49"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG93694.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="228" mass="24186" checksum="160060360EE7CE40" modified="2017-03-15" version="1">MSETILSLTDASLSLDGNAGRVDILHDISLDVTVGETLGLVGPSGSGKSSLLMLMGGLEQATGGKITALGQNLTAMNEDQLALFRRDNMGVVFQSFHLIPTMTALENVATPLELAGHKDAFDRAEAELGAVGLADRADHYPSQMSGGEQQRVALARASAPRPRLLLADEPTGNLDVTNGTAIMDLLFGLRDRHGATLIMVTHSNELATRCDRVIRLRDGRIDTTKVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PKR4</accession>
    <name>A0A1M5PKR4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Apolipoprotein N-acyltransferase</fullName>
            <shortName evidence="9">ALP N-acyltransferase</shortName>
            <ecNumber evidence="9">2.3.1.269</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">lnt</name>
        <name evidence="11" type="ORF">SAMN05444003_1698</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the phospholipid dependent N-acylation of the N-terminal cysteine of apolipoprotein, the last step in lipoprotein maturation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>a glycerophospholipid + N-terminal S-1,2-diacyl-sn-glyceryl-L-cysteinyl-[lipoprotein] = a 2-acyl-sn-glycero-3-phospholipid + H(+) + N-acyl-S-1,2-diacyl-sn-glyceryl-L-cysteinyl-[lipoprotein]</text>
            <dbReference type="Rhea" id="RHEA:48228"/>
            <dbReference type="Rhea" id="RHEA-COMP:14681"/>
            <dbReference type="Rhea" id="RHEA-COMP:14684"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:136912"/>
            <dbReference type="ChEBI" id="CHEBI:140656"/>
            <dbReference type="ChEBI" id="CHEBI:140657"/>
            <dbReference type="ChEBI" id="CHEBI:140660"/>
            <dbReference type="EC" id="2.3.1.269"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="9">Protein modification; lipoprotein biosynthesis (N-acyl transfer).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell membrane</location>
            <topology evidence="9">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the CN hydrolase family. Apolipoprotein N-acyltransferase subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.269" evidence="9"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02317.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900514.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1698"/>
    <dbReference type="EnsemblBacteria" id="SHH02317">
        <property type="protein sequence ID" value="SHH02317"/>
        <property type="gene ID" value="SAMN05444003_1698"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00666"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016410">
        <property type="term" value="F:N-acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042158">
        <property type="term" value="P:lipoprotein biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07571">
        <property type="entry name" value="ALP_N-acyl_transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01148">
        <property type="entry name" value="Lnt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004563">
        <property type="entry name" value="Apolipo_AcylTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003010">
        <property type="entry name" value="C-N_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036526">
        <property type="entry name" value="C-N_Hydrolase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045378">
        <property type="entry name" value="LNT_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00795">
        <property type="entry name" value="CN_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20154">
        <property type="entry name" value="LNT_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56317">
        <property type="entry name" value="SSF56317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00546">
        <property type="entry name" value="lnt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50263">
        <property type="entry name" value="CN_HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9 11" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="3 9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="11" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="7 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9 11" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="31"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="54"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="87"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="122"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="156"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="185"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="domain" description="CN hydrolase" evidence="10">
        <location>
            <begin position="218"/>
            <end position="457"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01148"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH02317.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="499" mass="54040" checksum="8D7BE28049AE1422" modified="2017-03-15" version="1">MNGVLESKWGRRLTLVLLGVTAGLGQAPTDLWFVTILALAAILALFRTSSTIQAAFGTGWWSGLGYFAFSLRWIVEPFLVDAATYGWIAPFALVLMAGGAALFWGAAGYVAYRFCRPLDVGFVATFSLVEIARSLILTGFPWALVGHIWIETPLALTAALWGPHGLTLIALLLALSILRLVSGAWLWAIAPAGAAIAFLVLSPPTLQTPADAPLIRIVQPNIPQQEKWDPRKKPENFARLLQLSSLPSGDPDLVVWPETALAEILERAGPSIDTISDLVGDVPLITGVQRRARDDIYHNSLIMIETGGEVTATYDKQHLVPFGEYFPGGELAARMGLRGFASSQGFGFTPGETDTKIDIPNIGLARPLICYEGIFSEELTTGERPDFLLLITNDAWFGKGAGPQQHLAQARLRSIEQGLPMVRAANTGISAMIDPYGRLISTLALDEQGVLDVQLPQPAPATLYARHGDILAMSAALMLLLTSILRMRRNPIDRTQTDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PP42</accession>
    <name>A0A1M5PP42_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Aldose 1-epimerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1756</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03488.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900562.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1756"/>
    <dbReference type="EnsemblBacteria" id="SHH03488">
        <property type="protein sequence ID" value="SHH03488"/>
        <property type="gene ID" value="SAMN05444003_1756"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.98.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008183">
        <property type="entry name" value="Aldose_1/G6P_1-epimerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011013">
        <property type="entry name" value="Gal_mutarotase_sf_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014718">
        <property type="entry name" value="GH-type_carb-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01263">
        <property type="entry name" value="Aldose_epim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74650">
        <property type="entry name" value="SSF74650"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH03488.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="322" mass="35456" checksum="985117ABAFB4AB9C" modified="2017-03-15" version="1">MIPFGTTKDGREVHKVTLFDGNLSVSILTWGAVVQDVRLAGVDRSLTLGSDTLSDYEGAMRYHGSLIGPIVNRISTSRVLIDGMMYELERNMDGRLHIHSGSDSTLLQVWDVVEVTNTSLTLRCDLVDGQCGLPGNRTIEATYSISAPATLSLAITGTTDAATLMNFANHSYWNFDGTEDWSGHTLHVHADQFLPTTDDFYPTGEIADVEGSALNFRNPRVIDPQNPPMDTNFCLSTDPQPLREVLTLTGASGVRMKVHTDQNGIQVYDGRHAIRPGKKAYEGLAIEAQNWPDAPTHRGFPSIKVTPDTPYTQDTEWSFFKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PSH8</accession>
    <name>A0A1M5PSH8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1813</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04581.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH04581">
        <property type="protein sequence ID" value="SHH04581"/>
        <property type="gene ID" value="SAMN05444003_1813"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH04581.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="128" mass="14769" checksum="CA21B52E2EFCD547" modified="2017-03-15" version="1">MIRPQYHFRWIDGQLHSWDIRKLVRLAEDQPVIDVALDDIKEINEPYWFGKGGDIPTCNRIMEHAKQVEETNLSYPILLCSEGRVMDGMHRIMKAHGLGHVTIKAKRLLKTPPPDNIGKTPNQLSYDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PTG6</accession>
    <name>A0A1M5PTG6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1824</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04799.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900620.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1824"/>
    <dbReference type="EnsemblBacteria" id="SHH04799">
        <property type="protein sequence ID" value="SHH04799"/>
        <property type="gene ID" value="SAMN05444003_1824"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011719">
        <property type="entry name" value="CHP02058"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037103">
        <property type="entry name" value="Tubulin/FtsZ-like_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34784">
        <property type="entry name" value="PTHR34784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09585">
        <property type="entry name" value="Lin0512_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH04799.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="119" mass="12819" checksum="861B1961298B1ACE" modified="2017-03-15" version="1">MTDQRFIIEMGIGNDLHGMDYQKAAARAIEDAFRHSSIPMFNALDIPHSDMRVQVTVGVQEPDKIDPVILAQKLPRGAATVTAVKGGQNVPNPHGDTIVIATAAIEAFLPSQAGNWTQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PW84</accession>
    <name>A0A1M5PW84_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1870</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05719.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH05719">
        <property type="protein sequence ID" value="SHH05719"/>
        <property type="gene ID" value="SAMN05444003_1870"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH05719.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="79" mass="8626" checksum="FCD5137104CD2F6A" modified="2017-03-15" version="1">MRTFRAHSLGRVYIVSKSSIVGGRGGKLVAEALDGSDYISFNIYRLKAQTELFPCEMSSAKVTEFVLGIDPASVRLQSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PWB2</accession>
    <name>A0A1M5PWB2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">UPF0301 protein SAMN05444003_1860</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1860</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the UPF0301 (AlgH) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05533.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900651.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1860"/>
    <dbReference type="EnsemblBacteria" id="SHH05533">
        <property type="protein sequence ID" value="SHH05533"/>
        <property type="gene ID" value="SAMN05444003_1860"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00758">
        <property type="entry name" value="UPF0301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003774">
        <property type="entry name" value="UPF0301"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30327">
        <property type="entry name" value="PTHR30327"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02622">
        <property type="entry name" value="DUF179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009600"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00758"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH05533.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="189" mass="20431" checksum="5F5E04D83008C3E9" modified="2017-03-15" version="1">MVEINSDLSGKLLIAMPDMTDPRFSQSVVYMCAHSDEGAMGLIVNKPQPKVRFGNLLEQLNITKTEGVRDIRVHFGGPVEMSRGFVLHTTDYRSDEGTMEVDDGIGMTATLDVLEDIAKGEGPVTSMLALGYAGWAPGQLEGEIAENGWLVCDARNDILFGRANEHKWQAALKVLGIDPLLLSASGGRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PWS9</accession>
    <name>A0A1M5PWS9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Predicted branched-chain amino acid permease (Azaleucine resistance)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_1889</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the AzlC family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06120.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900675.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1889"/>
    <dbReference type="EnsemblBacteria" id="SHH06120">
        <property type="protein sequence ID" value="SHH06120"/>
        <property type="gene ID" value="SAMN05444003_1889"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011606">
        <property type="entry name" value="Brnchd-chn_aa_trnsp_permease"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34979">
        <property type="entry name" value="PTHR34979"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03591">
        <property type="entry name" value="AzlC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="46"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="73"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="136"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="167"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="191"/>
            <end position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010735"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH06120.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="235" mass="24574" checksum="A426AF0502393810" modified="2017-03-15" version="1">MSSTTVKTAYWHGFRDGAPFILMAFPFALLFGVIGTESGLAVSQTIAFSMLVIAGAAQFAALQLMLEDAAIGFVVLGGVVVNLRMLMYSASLVPYIGAAPFWQRALIAYFNFDQTYVASISKYEAEPNLSVAARTAYFFGVASPIVPVWIGSTVVGALVGSAIPEEYGLDFIVPIMFLAMVGPLLKTPAHIAAAVTSVVVALLLVGLPSGTGLLVAALCAMVAGVVVETLQERSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PXX4</accession>
    <name>A0A1M5PXX4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1930</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06847.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900709.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1930"/>
    <dbReference type="EnsemblBacteria" id="SHH06847">
        <property type="protein sequence ID" value="SHH06847"/>
        <property type="gene ID" value="SAMN05444003_1930"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH06847.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="301" mass="33238" checksum="D710454B9B9A98A9" modified="2017-03-15" version="1">MDRLTEMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAYYDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHMSPILGDFLTEFPDITVNMVLNNRYVELISEGFDMAVRIGELEDSTLRARKLTDTTRRMIASPAYFEEYGRPQKIDDLNEHKLLHYSNQANSAVWKLTAPSGEKRQVRTAGWLTVNDGQSLLNACIGGLGIAYLPSFLYADAMKEGLVEEAIPDLPVETQGIYAVYPPGRFTQPKVRAFIDFLVHAFAEKGPDTW</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PY03</accession>
    <name>A0A1M5PY03_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1911</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06532.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH06532">
        <property type="protein sequence ID" value="SHH06532"/>
        <property type="gene ID" value="SAMN05444003_1911"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH06532.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="153" mass="17139" checksum="9ED8CB26ED96809A" modified="2017-03-15" version="1">MISAFPVFLRRRHRQCPESAKGAAGYWRFNINWKRLRQFSFALMFIPSVLAAGPFDGLYIQAANSECGLVGVDGGALEIRDGIFYGVEVQCRMTEPVNVNNMDAILYTMQCSGEGQTWFERAMLMKPAQGDGLIMVWDGYAFVYDACTPIGEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PYU3</accession>
    <name>A0A1M5PYU3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">16S rRNA (Guanine966-N2)-methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1922</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06711.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900703.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1922"/>
    <dbReference type="EnsemblBacteria" id="SHH06711">
        <property type="protein sequence ID" value="SHH06711"/>
        <property type="gene ID" value="SAMN05444003_1922"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031167">
        <property type="term" value="P:rRNA methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002052">
        <property type="entry name" value="DNA_methylase_N6_adenine_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004398">
        <property type="entry name" value="RNA_MeTrfase_RsmD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004553">
        <property type="entry name" value="CHP00095"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00095">
        <property type="entry name" value="TIGR00095"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00092">
        <property type="entry name" value="N6_MTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH06711.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="185" mass="19909" checksum="3A2D69401D01B028" modified="2017-03-15" version="1">MRIIGGQHRGTQLADVGKGDEAAHLRPTSDRVRESLFNILMGGRFGDVISDARVLDLFAGTGALGLEALSRGAAHAMFVENGRVGQRLLSQNIAKLRREEDCEVLSVDATLLPKAVKPVDLIFMDPPYGKGLGLKALQAAKASGWVQSGTVTVWEEASQQLAPPGFQALDQRRYGDTWITILEAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q0L4</accession>
    <name>A0A1M5Q0L4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Acetyl-CoA acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1960</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the thiolase-like superfamily. Thiolase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07446.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900734.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1960"/>
    <dbReference type="EnsemblBacteria" id="SHH07446">
        <property type="protein sequence ID" value="SHH07446"/>
        <property type="gene ID" value="SAMN05444003_1960"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00751">
        <property type="entry name" value="thiolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002155">
        <property type="entry name" value="Thiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020615">
        <property type="entry name" value="Thiolase_acyl_enz_int_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020610">
        <property type="entry name" value="Thiolase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020617">
        <property type="entry name" value="Thiolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020613">
        <property type="entry name" value="Thiolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020616">
        <property type="entry name" value="Thiolase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02803">
        <property type="entry name" value="Thiolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00108">
        <property type="entry name" value="Thiolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000429">
        <property type="entry name" value="Ac-CoA_Ac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01930">
        <property type="entry name" value="AcCoA-C-Actrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00098">
        <property type="entry name" value="THIOLASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00737">
        <property type="entry name" value="THIOLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00099">
        <property type="entry name" value="THIOLASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thiolase_N" evidence="5">
        <location>
            <begin position="4"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="domain" description="Thiolase_C" evidence="6">
        <location>
            <begin position="269"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-thioester intermediate" evidence="3">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="3">
        <location>
            <position position="347"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="3">
        <location>
            <position position="377"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000429-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH07446.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="390" mass="40530" checksum="FF145EA3723CC424" modified="2017-03-15" version="1">MTNVVIASAARTAVGSFGGSFANTPAHDLGAAVLEAVVERAGIEKGEVSETILGQVLTAAQGQNPARQAHVNAGLPIESAAWGINQVCGSGLRAVALGAQHIQLGDADIVAAGGQENMTLSPHAAHLRAGHKMGDLKYIDTMIRDGLWDAFNGYHMGQTAENVADQWQITRDMQDEFAVASQNKAEAAQNAGKFDDEITAFTVKTRKGDIVVDKDEYIRHGANLEAMAKMRPAFTKEGSVTAANASGLNDGAAATLLMSADEAEKRGIEPLARIASYATAGLDPAIMGVGPVMASRKALEKAGWSVGDLDLVEANEAFAAQACAVNKDMGWDPAIVNVNGGAIAIGHPIGASGCRVLNTLLFEMKRRDAKKGLATLCIGGGMGVALCVER</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q151</accession>
    <name>A0A1M5Q151_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Protein-methionine-sulfoxide reductase catalytic subunit MsrP</fullName>
            <ecNumber evidence="5">1.8.5.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">msrP</name>
        <name evidence="7" type="ORF">SAMN05444003_1992</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>a quinone + H2O + L-methionyl-[protein] = a quinol + L-methionyl-(R)-S-oxide-[protein]</text>
            <dbReference type="Rhea" id="RHEA:51296"/>
            <dbReference type="Rhea" id="RHEA-COMP:12313"/>
            <dbReference type="Rhea" id="RHEA-COMP:12314"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16044"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:45764"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>a quinone + H2O + L-methionyl-[protein] = a quinol + L-methionyl-(S)-S-oxide-[protein]</text>
            <dbReference type="Rhea" id="RHEA:51292"/>
            <dbReference type="Rhea" id="RHEA-COMP:12313"/>
            <dbReference type="Rhea" id="RHEA-COMP:12315"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16044"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:44120"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Mo-molybdopterin</name>
            <dbReference type="ChEBI" id="CHEBI:71302"/>
        </cofactor>
        <text evidence="5">Binds 1 Mo-molybdopterin (Mo-MPT) cofactor per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Heterodimer of a catalytic subunit (MsrP) and a heme-binding subunit (MsrQ).</text>
    </comment>
    <comment type="PTM">
        <text evidence="5">Predicted to be exported by the Tat system. The position of the signal peptide cleavage has not been experimentally proven.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the MsrP family.</text>
    </comment>
    <dbReference type="EC" id="1.8.5.-" evidence="5"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08007.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900756.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1992"/>
    <dbReference type="EnsemblBacteria" id="SHH08007">
        <property type="protein sequence ID" value="SHH08007"/>
        <property type="gene ID" value="SAMN05444003_1992"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043546">
        <property type="term" value="F:molybdopterin cofactor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016672">
        <property type="term" value="F:oxidoreductase activity, acting on a sulfur group of donors, quinone or similar compound as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030091">
        <property type="term" value="P:protein repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01206">
        <property type="entry name" value="MsrP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022867">
        <property type="entry name" value="MsrP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000572">
        <property type="entry name" value="OxRdtase_Mopterin-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036374">
        <property type="entry name" value="OxRdtase_Mopterin-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00174">
        <property type="entry name" value="Oxidored_molyb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56524">
        <property type="entry name" value="SSF56524"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1 5" id="KW-0500">Molybdenum</keyword>
    <keyword evidence="4 5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Oxidored_molyb" evidence="6">
        <location>
            <begin position="80"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="region of interest" description="Molybdopterin binding" evidence="5">
        <location>
            <begin position="63"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="region of interest" description="Molybdopterin binding" evidence="5">
        <location>
            <begin position="217"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="60"/>
        </location>
        <ligand>
            <name>Mo-molybdopterin</name>
            <dbReference type="ChEBI" id="CHEBI:71302"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="118"/>
        </location>
        <ligand>
            <name>Mo-molybdopterin</name>
            <dbReference type="ChEBI" id="CHEBI:71302"/>
        </ligand>
        <ligandPart>
            <name>Mo</name>
            <dbReference type="ChEBI" id="CHEBI:28685"/>
        </ligandPart>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="153"/>
        </location>
        <ligand>
            <name>Mo-molybdopterin</name>
            <dbReference type="ChEBI" id="CHEBI:71302"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="201"/>
        </location>
        <ligand>
            <name>Mo-molybdopterin</name>
            <dbReference type="ChEBI" id="CHEBI:71302"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="206"/>
        </location>
        <ligand>
            <name>Mo-molybdopterin</name>
            <dbReference type="ChEBI" id="CHEBI:71302"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH08007.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="300" mass="33485" checksum="AED09058108500AA" modified="2017-03-15" version="1">MAHRWKNDLTHADVTPKEAFLNRRQILAGTAGLGAIAAAGLAEAQEDLQPNSLEDITSYNNFYEFGTGKSDPAANAHKLEIEPWSVKVDGLVDNPGDYSSADLLDGLTVEERIYRFRCVEAWAMVVPWNGIELADILNKVGIQSEAKYVAFETVVQPENMIGVQRRVLDFPYVEGLRIDEAMHPLTIMATGIYGEPIAKQNGAPMRLVVPWKYGFKSIKSIVRISLTDYEPPTSWNKANAREYGFYSNVNPNVDHPRWSQSSHRVIGGGLFASREPTLMFNGYEAEVASLYDGMDLSEFY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q1X3</accession>
    <name>A0A1M5Q1X3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Type II secretion system protein A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1975</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07751.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900747.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1975"/>
    <dbReference type="EnsemblBacteria" id="SHH07751">
        <property type="protein sequence ID" value="SHH07751"/>
        <property type="gene ID" value="SAMN05444003_1975"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13401">
        <property type="entry name" value="AAA_22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="1">
        <location>
            <begin position="46"/>
            <end position="215"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH07751.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="293" mass="32992" checksum="8FE720F55A196B7E" modified="2017-03-15" version="1">MSGDLYSEYFGFSERPFKILPDPDFLFWSKDHRRAFAILEYGMVTRAPLTVVTGEVGTGKTTLIQALLGQISDDVTVGLISNAQGGRGDLLRWVSSSLGLPFSAEEDYVTLFNQFQEFVINEYAHGRYVLLIIDEAQNLEKEVLEELRMLTNINSNKDELLQLILVGQPELQDMIALPELRQFAQRVSATYHLDPMDTVTTHQYIAHRLKHVGGNGQEFTPQAIQYIFYQSQGIPRIVNKLCDLALVYAASEQQTHVDVGTVEELIKDGIVKPMSPPPLFLTNRTDLGERAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q423</accession>
    <name>A0A1M5Q423_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 8 9">Nicotinate phosphoribosyltransferase</fullName>
            <shortName evidence="8">NAPRTase</shortName>
            <ecNumber evidence="4 8 9">6.3.4.21</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">pncB</name>
        <name evidence="12" type="ORF">SAMN05444003_2022</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8 9">Catalyzes the synthesis of beta-nicotinate D-ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8 9">
            <text>5-phospho-alpha-D-ribose 1-diphosphate + ATP + H2O + nicotinate = ADP + diphosphate + nicotinate beta-D-ribonucleotide + phosphate</text>
            <dbReference type="Rhea" id="RHEA:36163"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:32544"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57502"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.4.21"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 8 9">Cofactor biosynthesis; NAD(+) biosynthesis; nicotinate D-ribonucleotide from nicotinate: step 1/1.</text>
    </comment>
    <comment type="PTM">
        <text evidence="8 9">Transiently phosphorylated on a His residue during the reaction cycle. Phosphorylation strongly increases the affinity for substrates and increases the rate of nicotinate D-ribonucleotide production. Dephosphorylation regenerates the low-affinity form of the enzyme, leading to product release.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 8 9">Belongs to the NAPRTase family.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.21" evidence="4 8 9"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08600.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900783.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2022"/>
    <dbReference type="EnsemblBacteria" id="SHH08600">
        <property type="protein sequence ID" value="SHH08600"/>
        <property type="gene ID" value="SAMN05444003_2022"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00253">
        <property type="reaction ID" value="UER00457"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004516">
        <property type="term" value="F:nicotinate phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004514">
        <property type="term" value="F:nicotinate-nucleotide diphosphorylase (carboxylating) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009435">
        <property type="term" value="P:NAD biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00570">
        <property type="entry name" value="NAPRTase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041525">
        <property type="entry name" value="N/Namide_PRibTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040727">
        <property type="entry name" value="NAPRTase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006406">
        <property type="entry name" value="Nic_PRibTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007229">
        <property type="entry name" value="Nic_PRibTrfase-Fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036068">
        <property type="entry name" value="Nicotinate_pribotase-like_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11098">
        <property type="entry name" value="PTHR11098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04095">
        <property type="entry name" value="NAPRTase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17767">
        <property type="entry name" value="NAPRTase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000484">
        <property type="entry name" value="NAPRT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51690">
        <property type="entry name" value="SSF51690"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01514">
        <property type="entry name" value="NAPRTase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="6 8 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 8" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7 8 9" id="KW-0662">Pyridine nucleotide biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="NAPRTase_N" evidence="11">
        <location>
            <begin position="24"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="domain" description="NAPRTase" evidence="10">
        <location>
            <begin position="188"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="modified residue" description="Phosphohistidine; by autocatalysis" evidence="8">
        <location>
            <position position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004952"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010897"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00570"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003838"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF04095"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF17767"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHH08600.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="430" mass="49237" checksum="6010380F383FF921" modified="2017-03-15" version="1">MVDIATRVWNHKWKIDPIVRSLIDTDFYKLLMCQSVFRNRPDTQVTFSLINRTKTIRLAELIDEGELREQLDHVRSLSLSRGESTWMRGNTFYGKRQMFTSEFMDWFENLRLPPYHLEKRDGQYELTFEGSWPEVMLWEIPALAILMELRGRAVVNQMGRFEIQVLYARAMTRLWEKVEKLQGNPDLRIADFGTRRRHSFLWQDWCVQAMNAGLGESFVGTSNCLIAKNRDLEAIGTNAHELPMVYSALAETDDELRQAPYDVLSDWHAEHDGNLRIILPDTYGTKGFLDAAPDWLAGWTGIRVDSGDPATGAETAINWWKERGEDPTQKLVIFSDGLDVDKILELQSQFAGRCRVSFGWGTMLTNDFKGLTHNDTLAPFSLVCKAISADGKPTVKLSDNPRKAMGPEAEIERYKRVFGVGDQAEVEVVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q5H9</accession>
    <name>A0A1M5Q5H9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Geranylgeranyl diphosphate reductase</fullName>
            <ecNumber evidence="3">1.3.1.83</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Geranylgeranyl reductase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_2055</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>3 NADP(+) + phytyl diphosphate = geranylgeranyl diphosphate + 3 H(+) + 3 NADPH</text>
            <dbReference type="Rhea" id="RHEA:26229"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57533"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:75434"/>
            <dbReference type="EC" id="1.3.1.83"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Porphyrin-containing compound metabolism.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the geranylgeranyl reductase family. ChlP subfamily.</text>
    </comment>
    <dbReference type="EC" id="1.3.1.83" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09248.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900812.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2055"/>
    <dbReference type="EnsemblBacteria" id="SHH09248">
        <property type="protein sequence ID" value="SHH09248"/>
        <property type="gene ID" value="SAMN05444003_2055"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00067">
        <property type="reaction ID" value="UER00123"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102067">
        <property type="term" value="F:geranylgeranyl diphosphate reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045550">
        <property type="term" value="F:geranylgeranyl reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015995">
        <property type="term" value="P:chlorophyll biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015979">
        <property type="term" value="P:photosynthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010253">
        <property type="entry name" value="BchP_ChlP_pln/prok"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002938">
        <property type="entry name" value="FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011777">
        <property type="entry name" value="Geranylgeranyl_Rdtase_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01494">
        <property type="entry name" value="FAD_binding_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02023">
        <property type="entry name" value="BchP-ChlP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02032">
        <property type="entry name" value="GG-red-SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0149">Chlorophyll biosynthesis</keyword>
    <keyword evidence="5" id="KW-0521">NADP</keyword>
    <keyword evidence="4" id="KW-0602">Photosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD_binding_3" evidence="9">
        <location>
            <begin position="3"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006632"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012380"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023444"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00033069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH09248.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="393" mass="42716" checksum="3EABB7C68358312F" modified="2017-03-15" version="1">MIYDVVVVGGGPSGTTAAEDLARSGHTVAMIDRAGRIKPCGGAVPPRLIQDFFIPDDQIVAKISTARMISPTQRSVDIPIENGYVGMVDREHFDEFLRVRAKEAGAHRYTGTFQRIERDTDGTHVVFRDKISGNEQRLSCKLIIGADGARSNVAKAEVPGGDKIPYVIAYHEIIEAPGPTGTYDPKRCDVIYDGEISPDFYGWVFPHGKSASVGMGTGVDGVDLKEATAALRDASGLADCPTIRKEGAPIPLKPLDRWDNGKDVVLAGDAAGVVAPSSGEGIYYAMVGGRVAATAAAATLASGRVQDLMLARKMFMKEHKQVFRVLGAMQNAYYRSDERRERFVSLCHDIDVQKLTFEAYMNKKLVKARPMAHIKIGIKNLAHLTRLVSPMRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q6B4</accession>
    <name>A0A1M5Q6B4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">1-hydroxycarotenoid 3,4-desaturase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2072</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09585.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2072"/>
    <dbReference type="EnsemblBacteria" id="SHH09585">
        <property type="protein sequence ID" value="SHH09585"/>
        <property type="gene ID" value="SAMN05444003_2072"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002937">
        <property type="entry name" value="Amino_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008150">
        <property type="entry name" value="Phytoene_DH_bac_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01593">
        <property type="entry name" value="Amino_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00982">
        <property type="entry name" value="PHYTOENE_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amino_oxidase" evidence="2">
        <location>
            <begin position="14"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="493"/>
            <end position="519"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH09585.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="519" mass="55134" checksum="65E98E4C9CD27D6A" modified="2017-03-15" version="1">MISNQRIAVIGAGIGGLAAALRLSHLGAQVDVFDIHDSPGGKMRTLPSSAGPVDAGPTVLTLIHVFERLYADVGEDFHQHLNPSPLHVLARHFWEDGTVLDLTIDPRENHDTIAQVFGAEEANRFLKFDQRAKRLFDAFDLPMMQKAAPDTLGMVKTVAAKPGLAFDMAPHLSLAGLLKGSFKSPHLQQLFGRYATYVGGSPLQSPALLSLIWNAEARGVWTLKDGMNALAQNMMKLAQDRGAQFHFGTPVKRVVQQNGRVTGIETAGGKTNADLVVFNGDPRALIEGALGPSAQAAVTPDAVEPRSLSAYVHAFSAAPSGAELSHHNVFFSSVTNAEFSPLAKGERPTDATLYLCAQDHGTVAADAEQRFEIIMNGPPVGTDPGKEKDTCQTQIFDRFRTFGLFFDRRPGPDTLTTPAEFNRLFPQSLGSLYGRSPHGLTAGMKRPQAKTKVPGLYLCGGGAHPGAGIPMATLSAKHAVDAILNDLSSISTSPQTATHGGISTGSATAAPKPSLSSRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q6M8</accession>
    <name>A0A1M5Q6M8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative thiamine transport system substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2076</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial solute-binding protein 1 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09658.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900831.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2076"/>
    <dbReference type="EnsemblBacteria" id="SHH09658">
        <property type="protein sequence ID" value="SHH09658"/>
        <property type="gene ID" value="SAMN05444003_2076"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006059">
        <property type="entry name" value="SBP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027020">
        <property type="entry name" value="YnjB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13416">
        <property type="entry name" value="SBP_bac_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF029172">
        <property type="entry name" value="UCP029172_ABC_sbc_YnjB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0574">Periplasm</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012160683" evidence="4">
        <location>
            <begin position="19"/>
            <end position="399"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH09658.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="399" mass="42942" checksum="5077C1709967F1BA" modified="2017-03-15" version="1">MKHLAILAALLAPLPALADTDPADWAAVTEKADGQTVYWNAWGGSTTTNDFIAWVGSRVAEDYGVTLEHVKLSATSDAVTRVVAEKDAGENDDGAIDMIWINGANFSAMKEADLLFGPFAEQLPNWQFVDVEGKTVQTDFTVPVEGYESPWAMAQVVFIHDTADMPDRLGDMAALQDWAAANPGRFTYPQPPDFLGTTFLKQVLVDILPDASVLAAPVSDDSYDEVTAPLWAYLDELTPNLWRQGRAYPTTGNAQFQLISDGEVDLAISFSPGSASTAIANNELPPTVRTFVLDKGTIGNASFVAIPYNSGSKEGAMVVANFLMSPEAQARAQDPEVLGYGTVLNMAALSDEDRAVFDSLELGIATLSPAELGTAQAEPHPSWMTRIADDWVERYGVAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QQ99</accession>
    <name>A0A1M5QQ99_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uroporphyrinogen-III synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2260</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16292.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901135.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2260"/>
    <dbReference type="EnsemblBacteria" id="SHH16292">
        <property type="protein sequence ID" value="SHH16292"/>
        <property type="gene ID" value="SAMN05444003_2260"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004852">
        <property type="term" value="F:uroporphyrinogen-III synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033014">
        <property type="term" value="P:tetrapyrrole biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06578">
        <property type="entry name" value="HemD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10090">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036108">
        <property type="entry name" value="4pyrrol_syn_uPrphyn_synt_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003754">
        <property type="entry name" value="4pyrrol_synth_uPrphyn_synth"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02602">
        <property type="entry name" value="HEM4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69618">
        <property type="entry name" value="SSF69618"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HEM4" evidence="1">
        <location>
            <begin position="28"/>
            <end position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02602"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH16292.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="232" mass="24642" checksum="91E53801EBB8F572" modified="2017-03-15" version="1">MTTATLLLCRTEAKSLEFQRAVETKVGHGVETIISPAFRIEDIETKPAKTSYDHLIFTSANGALRAGQLGLRSISTVFCVGPASASKARALGFEAIDVGGDVNELTSTIKTQNLKGSLLHVSGEHVAGDLIGDLGQANIQVERLVAYRQVPLPPTTEFSNCLESGAPKVLPFFSPRATLILEGVNAGSNTYIIAMSEAVADCLGDRCKFDITIAQSPNFRAMLDATCAKLVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QQP2</accession>
    <name>A0A1M5QQP2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">tRNA N6-adenosine threonylcarbamoyltransferase</fullName>
            <ecNumber evidence="6">2.3.1.234</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">N6-L-threonylcarbamoyladenine synthase</fullName>
            <shortName evidence="6">t(6)A synthase</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">tRNA threonylcarbamoyladenosine biosynthesis protein TsaD</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">tsaD</name>
        <name evidence="9" type="ORF">SAMN05444003_2259</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>adenosine(37) in tRNA + L-threonylcarbamoyladenylate = AMP + H(+) + N(6)-L-threonylcarbamoyladenosine(37) in tRNA</text>
            <dbReference type="Rhea" id="RHEA:37059"/>
            <dbReference type="Rhea" id="RHEA-COMP:10162"/>
            <dbReference type="Rhea" id="RHEA-COMP:10163"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:73682"/>
            <dbReference type="ChEBI" id="CHEBI:74411"/>
            <dbReference type="ChEBI" id="CHEBI:74418"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.3.1.234"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
        <text evidence="6">Binds 1 Fe(2+) ion per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the KAE1 / TsaD family.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.234" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16268.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901134.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2259"/>
    <dbReference type="EnsemblBacteria" id="SHH16268">
        <property type="protein sequence ID" value="SHH16268"/>
        <property type="gene ID" value="SAMN05444003_2259"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061711">
        <property type="term" value="F:N(6)-L-threonylcarbamoyladenine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002949">
        <property type="term" value="P:tRNA threonylcarbamoyladenosine modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01445">
        <property type="entry name" value="TsaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000905">
        <property type="entry name" value="Gcp-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017861">
        <property type="entry name" value="KAE1/TsaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017860">
        <property type="entry name" value="Peptidase_M22_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022450">
        <property type="entry name" value="TsaD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11735">
        <property type="entry name" value="PTHR11735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11735:SF6">
        <property type="entry name" value="PTHR11735:SF6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00814">
        <property type="entry name" value="TsaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00789">
        <property type="entry name" value="OSIALOPTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00329">
        <property type="entry name" value="gcp_kae1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03723">
        <property type="entry name" value="T6A_TsaD_YgjD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01016">
        <property type="entry name" value="GLYCOPROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="4 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0808">Transferase</keyword>
    <keyword evidence="3 6" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="TsaD" evidence="8">
        <location>
            <begin position="31"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="140"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="343"/>
            <end position="364"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="118"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="122"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="173"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="186"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="190"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="288"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="316"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001866"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01445"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH16268.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="364" mass="38281" checksum="DE3B3FFF71D1C62C" modified="2017-03-15" version="1">MTDPVYILGIESSCDDTAAAVLRADADSHAVLSSVVIGQTELHKAFGGVVPEIAARAHAEKLDLAVEQALEEANIQITDLTAVAATAGPGLVGGVVSGLMCAKGLAAALNIPLIGVNHLAGHALSPQIEGQSPFPYLMLLVSGGHCQFLIAKSDDKFIRIGGTIDDAPGEAFDKAARILGLPQPGGPAIEEAAKQGDPKCFDLPRPLLNRDGCDMSFSGLKTALLRARDAVLNDQNEIARQDQCDLAASFQAAVTDILKVKSQWAFQRYLEFEPKHPCFAVAGGVAANQTIRGDLKQVAQDAGAQFVAPPMKYCTDNAAMIAYAGLTKFKRSDFDGFDLSARPRWPLDSESPSMLGSGKKGAKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QTF0</accession>
    <name>A0A1M5QTF0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">UDP-glucose 4-epimerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2290</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the NAD(P)-dependent epimerase/dehydratase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16883.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901179.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH16883">
        <property type="protein sequence ID" value="SHH16883"/>
        <property type="gene ID" value="SAMN05444003_2290"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001509">
        <property type="entry name" value="Epimerase_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01370">
        <property type="entry name" value="Epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Epimerase" evidence="2">
        <location>
            <begin position="9"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007637"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH16883.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="295" mass="32043" checksum="F7E0319E88DE675A" modified="2017-03-15" version="1">MSQTEKKRILVTGATGFVGKHLCEHLEGCGHTVVRIGRSGTPSIDLARENIPNDLLKDVDVVVHLAASKAGSTVDPKGEQTKDIAARVAVSVNRSEVKRLIHLSSIAARLAEENDRSKRPYGVQKLAAEHALADGLNNCQIVTLRPPVIYGEGATGPFGTLLKFVQRGLPLPLANASEPRTYLSIVNLCALLSQMVEAGDPVWKKADGLIFEPNDGRKVGTRDLAEMLGKSMEIETRVFWLPQSIIRSLGLITGKGDQVAAVFGPLQCREEPSLEEYFGWEPSEQMPESLKVFGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QUC9</accession>
    <name>A0A1M5QUC9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Initiator Replication protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2326</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17702.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901243.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH17702">
        <property type="protein sequence ID" value="SHH17702"/>
        <property type="gene ID" value="SAMN05444003_2326"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006270">
        <property type="term" value="P:DNA replication initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000525">
        <property type="entry name" value="Initiator_Rep_prot"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01051">
        <property type="entry name" value="Rep_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rep_3" evidence="1">
        <location>
            <begin position="21"/>
            <end position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01051"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH17702.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="397" mass="44328" checksum="E4BE6CEB6378251E" modified="2017-03-15" version="1">MAEQTAKDMNVELTGALRRGSVKKNVAAIHVSGKLTLLQRKLSNVLLLNAYDTLIHQTTHRIDARTLCAMIGYNSNDMETLKASLRGLVETLAEWDMLDADGQQEWGVSSLLAYAKLKGGVCEYSYSAALAEKLHDPKVFALINLNIQRRFTSGHALALYENCYRFVRTGSTGWWELELFRRLMGVSDSTYYEVFKHLNAKIIKPAVAEVNKTSNIIVTPETRKMGRAVSHIRFKIKENPQLAILDIDDGEGARNSPVYDRLRGQGVSDRLARQWINEHGDAYVAEKISYVQGQKGVQNPISYLSAALKADYGAGEPAEPKPSSARARKLMAVRDAVAARTPTQRDADKRLFVSRIEDAAARQDFEAHGWMSALNAETIFEFWEDMMPGVFDEGVTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QVL9</accession>
    <name>A0A1M5QVL9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Thiamine-phosphate synthase</fullName>
            <ecNumber evidence="8">2.5.1.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Thiamine-phosphate pyrophosphorylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_2336</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate + 4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine + 2 H(+) = CO2 + diphosphate + thiamine phosphate</text>
            <dbReference type="Rhea" id="RHEA:47848"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37575"/>
            <dbReference type="ChEBI" id="CHEBI:57841"/>
            <dbReference type="ChEBI" id="CHEBI:62890"/>
            <dbReference type="EC" id="2.5.1.3"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 8">
            <text>2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate + 4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine + 2 H(+) = CO2 + diphosphate + thiamine phosphate</text>
            <dbReference type="Rhea" id="RHEA:47844"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37575"/>
            <dbReference type="ChEBI" id="CHEBI:57841"/>
            <dbReference type="ChEBI" id="CHEBI:62899"/>
            <dbReference type="EC" id="2.5.1.3"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 8">
            <text>4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine + 4-methyl-5-(2-phosphooxyethyl)-thiazole + H(+) = diphosphate + thiamine phosphate</text>
            <dbReference type="Rhea" id="RHEA:22328"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37575"/>
            <dbReference type="ChEBI" id="CHEBI:57841"/>
            <dbReference type="ChEBI" id="CHEBI:58296"/>
            <dbReference type="EC" id="2.5.1.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4 9">Cofactor biosynthesis; thiamine diphosphate biosynthesis; thiamine phosphate from 4-amino-2-methyl-5-diphosphomethylpyrimidine and 4-methyl-5-(2-phosphoethyl)-thiazole: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the thiamine-phosphate synthase family.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.3" evidence="8"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17916.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901257.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2336"/>
    <dbReference type="EnsemblBacteria" id="SHH17916">
        <property type="protein sequence ID" value="SHH17916"/>
        <property type="gene ID" value="SAMN05444003_2336"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00060">
        <property type="reaction ID" value="UER00141"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004789">
        <property type="term" value="F:thiamine-phosphate diphosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009228">
        <property type="term" value="P:thiamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009229">
        <property type="term" value="P:thiamine diphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00564">
        <property type="entry name" value="TMP_TenI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036206">
        <property type="entry name" value="ThiamineP_synth_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022998">
        <property type="entry name" value="ThiamineP_synth_TenI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034291">
        <property type="entry name" value="TMP_synthase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02581">
        <property type="entry name" value="TMP-TENI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51391">
        <property type="entry name" value="SSF51391"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00693">
        <property type="entry name" value="thiE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 8" id="KW-0784">Thiamine biosynthesis</keyword>
    <keyword evidence="5 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TMP-TENI" evidence="10">
        <location>
            <begin position="12"/>
            <end position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000876"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001159"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005165"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU004253"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02581"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH17916.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="198" mass="22295" checksum="A9BD1D8FD711424B" modified="2017-03-15" version="1">MTLDRFYPIFDSTDWLRRLLPLGIKLVQLRAKDLDEGTLRQEIRTARDLCHDAGATLIVNDHWQIAIEEGCDYIHLGQEDLDTSDIDAIRAAGLKLGVSTHDKAELRRAMELNPDYIALGPIYPTILKKMKWHEQGLEKLTIWKEIIGDTPLIAIGGMSVERAQGAFDHGADVVSAVTDIALNEDPEQRVRDWIAATR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QVZ2</accession>
    <name>A0A1M5QVZ2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">L-fuculose-phosphate aldolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2344</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901272.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2344"/>
    <dbReference type="EnsemblBacteria" id="SHH18081">
        <property type="protein sequence ID" value="SHH18081"/>
        <property type="gene ID" value="SAMN05444003_2344"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.225.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001303">
        <property type="entry name" value="Aldolase_II/adducin_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036409">
        <property type="entry name" value="Aldolase_II/adducin_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00596">
        <property type="entry name" value="Aldolase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01007">
        <property type="entry name" value="Aldolase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53639">
        <property type="entry name" value="SSF53639"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldolase_II" evidence="1">
        <location>
            <begin position="11"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH18081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="215" mass="23428" checksum="E7AA0CBF9333CD5B" modified="2017-03-15" version="1">MVYEKTTETRQAIIDACLRMNAEGINQGTSGNISVRVGEEMLITPSGIPYDQLTPKDIIRVRLESGQVRGLHKPSSEWRFHCDLLQARPDMQAVVHAHPVHCTALSMLRQPLPACHYMIGLFGGSDVPVAGYARYGSAALSEAVVAVMEDRHGCLMANHGATVLGEDLGKALWRLGELEILAQSYLAARAVGEVVLLSDQEMAEAIEAFKDYGPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QX90</accession>
    <name>A0A1M5QX90_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycosyltransferase, GT2 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2366</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18531.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901307.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2366"/>
    <dbReference type="EnsemblBacteria" id="SHH18531">
        <property type="protein sequence ID" value="SHH18531"/>
        <property type="gene ID" value="SAMN05444003_2366"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="243"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_trans_2-like" evidence="2">
        <location>
            <begin position="11"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH18531.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="322" mass="35670" checksum="EF7DFFE8A29F4856" modified="2017-03-15" version="1">MTDIDDQIAAVIIGRNEGERLKVCLQSLHGQLAHIIYVDSGSNDGSQEAAVELGATLVELDPSLPFTAARARNAGLSETVGRNIELIQFVDGDCTVQSDWIETAAAFLASNPHAAVACGRRREKFPEKSVYNRLIDKEWNTPVGEVRSCGGDALIRKSALDDVGGFNPTLIAGEEPELCVRLRGAGWSVHRLDHEMTLHDAAIFEFGQWWKRSSRAGHAYAEGFDLHGSPPENHNRAPMKRAVVWGLLIPFLILALLFVFPLASLVIALLYPMQVARLAWQRRDLAEGFFLTLGKLPEAQGIAKYHLNRFFGKRSQIIEYKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QZK2</accession>
    <name>A0A1M5QZK2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2390</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18973.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901345.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2390"/>
    <dbReference type="EnsemblBacteria" id="SHH18973">
        <property type="protein sequence ID" value="SHH18973"/>
        <property type="gene ID" value="SAMN05444003_2390"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1890">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007410">
        <property type="entry name" value="PCuAC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036182">
        <property type="entry name" value="PCuAC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36302">
        <property type="entry name" value="PTHR36302"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04314">
        <property type="entry name" value="PCuAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110087">
        <property type="entry name" value="SSF110087"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013064772" evidence="1">
        <location>
            <begin position="19"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH18973.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="150" mass="16068" checksum="98CD2EFF0AA879E4" modified="2017-03-15" version="1">MKYVAAALMSLLPISAFAHDYAIDGLKVAHPIAKATTETARASAGYLSITNTGETSDRLVAVEADFPRVMVHDTVVEDGVASMVHMDSITLEPGQTVVFEPGGLHVMFMGLSDQMIEGQKIPGTLIFENAGRLDIEFNVENLDGDAHANH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R1U9</accession>
    <name>A0A1M5R1U9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2460</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH20377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901442.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH20377">
        <property type="protein sequence ID" value="SHH20377"/>
        <property type="gene ID" value="SAMN05444003_2460"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="44"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="68"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="97"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH20377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="131" mass="14351" checksum="44C8059F666CC3EF" modified="2017-03-15" version="1">MRSVAFVAAILAGYAAISFGLLKILWIKFGAHFYWSDHSHDVQAPLGLDAALILALILAGLSMISLRHIMPASLTVIGVLLYEYLFLHDEVHSLTQVLFAIGLISGQLITFFLNLLVAIGHDKSFKGQMVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R1V2</accession>
    <name>A0A1M5R1V2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 8">2-dehydropantoate 2-reductase</fullName>
            <ecNumber evidence="4 8">1.1.1.169</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7 8">Ketopantoate reductase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_2449</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>(R)-pantoate + NADP(+) = 2-dehydropantoate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:16233"/>
            <dbReference type="ChEBI" id="CHEBI:11561"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15980"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.1.1.169"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Cofactor biosynthesis; (R)-pantothenate biosynthesis; (R)-pantoate from 3-methyl-2-oxobutanoate: step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the ketopantoate reductase family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.169" evidence="4 8"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH20148.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901423.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2449"/>
    <dbReference type="EnsemblBacteria" id="SHH20148">
        <property type="protein sequence ID" value="SHH20148"/>
        <property type="gene ID" value="SAMN05444003_2449"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00028">
        <property type="reaction ID" value="UER00004"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008677">
        <property type="term" value="F:2-dehydropantoate 2-reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015940">
        <property type="term" value="P:pantothenate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003710">
        <property type="entry name" value="ApbA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013752">
        <property type="entry name" value="KPA_reductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013332">
        <property type="entry name" value="KPR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02558">
        <property type="entry name" value="ApbA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08546">
        <property type="entry name" value="ApbA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00745">
        <property type="entry name" value="apbA_panE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0521">NADP</keyword>
    <keyword evidence="8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6 8" id="KW-0566">Pantothenate biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ApbA" evidence="9">
        <location>
            <begin position="3"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="domain" description="ApbA_C" evidence="10">
        <location>
            <begin position="197"/>
            <end position="315"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000784"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007870"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00019465"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022655"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00032024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU362068"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02558"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF08546"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH20148.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="324" mass="34448" checksum="CA986B53A179A3A3" modified="2017-03-15" version="1">MKICIFGAGAIGGYMGAKLAEAGADVSLVARGPHLKAMRENGLRLIEENGERTANVVASDDPADLGPQDYVIVTLKAHSVPPVVPKMQPLIGENTTIVSGVNGVPWWYFHKLGGALEGTRLETVDPGNAQWDGFGPDRVLGCVVYPAAEVIEPGVVKHIEGNRFSLGEPDGSKSERALALSKALASAGLRAPVRPKIRDEIWVKLWGNLSFNPISALTHATLDVLCTDPGTQAVARNMMVEAQEIAEKLGVKFPIDVDRRIKGGAEVGAHRTSMLQDLDQGRPMEIDALVGSVQELGRVTGTPTPTIDTVLSLVALRGRVAGLY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R2Y1</accession>
    <name>A0A1M5R2Y1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposase InsO and inactivated derivatives</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2466</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH20498.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901451.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH20498">
        <property type="protein sequence ID" value="SHH20498"/>
        <property type="gene ID" value="SAMN05444003_2466"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010921">
        <property type="entry name" value="Trp_repressor/repl_initiator"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48295">
        <property type="entry name" value="SSF48295"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="1">
        <location>
            <begin position="132"/>
            <end position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH20498.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="326" mass="37827" checksum="ECC865C74BA19498" modified="2017-03-15" version="1">MRYPASEKLEIIRTVEASHLPVKQTLAMIGIPSSRYYDWYARWCDGGVDALADRSPRRKSVWNRIPDKVREDVVDFALEHEDLTPRELAVKYTDEKRYFVSESSVYRILSAEDLITAPAHVVIRAADKFRDKTSRPNELWQTDFTYLKVIGWGWFYLSTILDDYSRYIIIWKLCTTMKARDVTDTLDLALEASGCDQAAVVHKPRLLSDNGASYVAADLAEYLNDKGMDHVRGAPHHPQTQGKIERWHQTMKNRVLLENYFLPGDLEHQIGAFVDHYNNHRYHESLNNLTPADVYHGRGAKILKMRKEIKKQTIRKRRLQHQAAEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RBD8</accession>
    <name>A0A1M5RBD8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2479</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23379.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901880.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2479"/>
    <dbReference type="EnsemblBacteria" id="SHH23379">
        <property type="protein sequence ID" value="SHH23379"/>
        <property type="gene ID" value="SAMN05444003_2479"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010593">
        <property type="entry name" value="DUF1159"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007922">
        <property type="entry name" value="DUF721/UPF0232"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05258">
        <property type="entry name" value="DciA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF032064">
        <property type="entry name" value="UCP032064"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="126"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="128"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH23379.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="172" mass="18919" checksum="A986963F15CEADED" modified="2017-03-15" version="1">MRSPRHNGTTYGFSRAVTLMQSRIRKASEGRGFSESRLLTHWAEIVGEDTAKVSNPVDIKYSRGGMGATLTLLTTGASAPMLEMQKEQIRKKVNRCYGYNAISRVRITQSAPTGFADGKVAFQHAPKAAKAPDREAEGRAREATTGVESEELRQALERLGANVISKDKTHKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RDD8</accession>
    <name>A0A1M5RDD8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">16S rRNA (Cytosine967-C5)-methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_2524</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24291.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901620.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2524"/>
    <dbReference type="EnsemblBacteria" id="SHH24291">
        <property type="protein sequence ID" value="SHH24291"/>
        <property type="gene ID" value="SAMN05444003_2524"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001510">
        <property type="term" value="P:RNA methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.940.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018314">
        <property type="entry name" value="Fmu/NOL1/Nop2p_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001678">
        <property type="entry name" value="MeTrfase_RsmB/NOP2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035926">
        <property type="entry name" value="NusB-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006027">
        <property type="entry name" value="NusB_RsmB_TIM44"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023267">
        <property type="entry name" value="RCMT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22807">
        <property type="entry name" value="PTHR22807"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01189">
        <property type="entry name" value="Methyltr_RsmB-F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01029">
        <property type="entry name" value="NusB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR02008">
        <property type="entry name" value="RCMTFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48013">
        <property type="entry name" value="SSF48013"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01153">
        <property type="entry name" value="NOL1_NOP2_SUN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51686">
        <property type="entry name" value="SAM_MT_RSMB_NOP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6 8" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="4 6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 6 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="SAM_MT_RSMB_NOP" evidence="7">
        <location>
            <begin position="132"/>
            <end position="423"/>
        </location>
    </feature>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="6">
        <location>
            <begin position="240"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="6">
        <location>
            <position position="355"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="261"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="302"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51686"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH24291.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="424" mass="45739" checksum="5A40988ABF26CAE0" modified="2017-03-15" version="1">MDQTGLAARRTAHFILQQVTTEGRLMSEVIGAGALNDLAPDDRARAQRLATDALRGLDRADKMLRQHVKKAPPIFVQNALRLAVVELATDGSAHGVVNSYVEIVARNKRTEKLKGLTNAVLRKVSETAAAQWGKSAVPVMPKWLRGPLIEAWGQKAIAGVERAHFSGAPLDLTPKTDADAVARATGGTVLPTGSVRVQEAGQVSRMSGFIEGEWWVQDAAAAMPVRLLDPQEGDRVLDLCAAPGGKTLQLAAMGTDVTAVDVSEGRMRRVQENLKRTGLTAEVIVSDAFEYQETGFDAVLLDAPCSATGTIRRHPDLPYAKDGSEFGALIGQQEAMIDHALGLLKPGGAMVFCTCSLLPDEGEVQVEEALGRHSDLTIDRAALDKPWIEKDWITEEGGLRFRPDYWPDIGGMDGFYMAVLRKGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RFG6</accession>
    <name>A0A1M5RFG6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Anti-ECFsigma factor, ChrR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2534</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24513.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2534"/>
    <dbReference type="EnsemblBacteria" id="SHH24513">
        <property type="protein sequence ID" value="SHH24513"/>
        <property type="gene ID" value="SAMN05444003_2534"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd20301">
        <property type="entry name" value="cupin_ChrR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.1320">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012807">
        <property type="entry name" value="Anti-sigma_ChrR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041916">
        <property type="entry name" value="Anti_sigma_zinc_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025979">
        <property type="entry name" value="ChrR-like_cupin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12973">
        <property type="entry name" value="Cupin_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02451">
        <property type="entry name" value="anti_sig_ChrR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cupin_7" evidence="1">
        <location>
            <begin position="114"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12973"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH24513.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="220" mass="23454" checksum="A44DE37FC05CD2F6" modified="2017-03-15" version="1">MMTTMKQIKHHLTDELLMGYAAGTLPEAFNLVVATHISMCDECRAALAEYEAVGGEVMMSGEPVELSEDSLEATLALIADNAFRKEEAKSAAKTSDIPAPLQDYIGGGLEDVKWRKIGGGVSQMILPTSKDATVRLLKIPGGTAVPDHGHNGTELTLVLKGAFADEEDTFSAGDVEVANEDLQHTPVAAPGEDCICLAATDAPLKFNAFLPRIAQKFVRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RFP9</accession>
    <name>A0A1M5RFP9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Hint domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2565</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25145.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2565"/>
    <dbReference type="EnsemblBacteria" id="SHH25145">
        <property type="protein sequence ID" value="SHH25145"/>
        <property type="gene ID" value="SAMN05444003_2565"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028992">
        <property type="entry name" value="Hedgehog/Intein_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036844">
        <property type="entry name" value="Hint_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13403">
        <property type="entry name" value="Hint_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51294">
        <property type="entry name" value="SSF51294"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hint_2" evidence="2">
        <location>
            <begin position="206"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13403"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH25145.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="386" mass="42301" checksum="D593F0E259730F96" modified="2017-03-15" version="1">MIAQVRQTDDDQRARSALEADGNGQDVSWLGLRERRGGAFSTVGLGKTAAARVDPDKTLDQGTILLEFVAIPGAVDQVLLRYQSPEPLGLMFEIRLDLQGNLIITHSEIGTRRSYRIDAGFVTRSNCVSLRFTWDADQGIGGLSMEIAETGALYFETLELPEPLVLRDAVRMFACTQFMQLANGVRFVAIADETLPHGPLPTLGLDTWINTDRGRRSVSDLKPGDVVKDVNGRAAQVRWVGLAEVPARGRFAPRQICAPFHGAKTDLICSHDQLIRLAGSEVEYLFATDFVAARVGDLSHGVLSVPPSRVPLATYAQFVMDRPCVIDVSGVLIQGLDIQELQDRPDLRRQSVLANLPEVMIPTVSPARLDVLMPFETVAWSQMQAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RH48</accession>
    <name>A0A1M5RH48_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 15">Succinyl-diaminopimelate desuccinylase</fullName>
            <shortName evidence="15">SDAP desuccinylase</shortName>
            <ecNumber evidence="5 15">3.5.1.18</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="14 15">N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="15" type="primary">dapE</name>
        <name evidence="17" type="ORF">SAMN05444003_2564</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="15">Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 15">
            <text>H2O + N-succinyl-(2S,6S)-2,6-diaminoheptanedioate = (2S,6S)-2,6-diaminoheptanedioate + succinate</text>
            <dbReference type="Rhea" id="RHEA:22608"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:30031"/>
            <dbReference type="ChEBI" id="CHEBI:57609"/>
            <dbReference type="ChEBI" id="CHEBI:58087"/>
            <dbReference type="EC" id="3.5.1.18"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="15">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <cofactor evidence="15">
            <name>Co(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:48828"/>
        </cofactor>
        <text evidence="15">Binds 2 Zn(2+) or Co(2+) ions per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 15">Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; LL-2,6-diaminopimelate from (S)-tetrahydrodipicolinate (succinylase route): step 3/3.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4 15">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 15">Belongs to the peptidase M20A family. DapE subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.18" evidence="5 15"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25123.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901898.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2564"/>
    <dbReference type="EnsemblBacteria" id="SHH25123">
        <property type="protein sequence ID" value="SHH25123"/>
        <property type="gene ID" value="SAMN05444003_2564"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00021"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050897">
        <property type="term" value="F:cobalt ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009014">
        <property type="term" value="F:succinyl-diaminopimelate desuccinylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019877">
        <property type="term" value="P:diaminopimelate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01690">
        <property type="entry name" value="DapE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001261">
        <property type="entry name" value="ArgE/DapE_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036264">
        <property type="entry name" value="Bact_exopeptidase_dim_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005941">
        <property type="entry name" value="DapE_proteobac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002933">
        <property type="entry name" value="Peptidase_M20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011650">
        <property type="entry name" value="Peptidase_M20_dimer"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07687">
        <property type="entry name" value="M20_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01546">
        <property type="entry name" value="Peptidase_M20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55031">
        <property type="entry name" value="SSF55031"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01246">
        <property type="entry name" value="dapE_proteo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00759">
        <property type="entry name" value="ARGE_DAPE_CPG2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 15" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="13 15" id="KW-0170">Cobalt</keyword>
    <keyword evidence="11 15" id="KW-0220">Diaminopimelate biosynthesis</keyword>
    <keyword evidence="9 15" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="12 15" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="8 15" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10 15" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="M20_dimer" evidence="16">
        <location>
            <begin position="178"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="active site" evidence="15">
        <location>
            <position position="72"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="15">
        <location>
            <position position="136"/>
        </location>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="70"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="103"/>
        </location>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="137"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="165"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="354"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001246"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005130"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00031891"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF07687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="SHH25123.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="381" mass="40856" checksum="65D58AB8B8A026EE" modified="2017-03-15" version="1">MTPVDPVDLTAQLVRCPSITPEEGGALVLLEDLLSSAGFECTQVDRNGTSNLFARWGRKGANRSFGFNGHTDVVPLGDENAWTVDPFGAEIKDGFLWGRGSTDMKSGVAAFTAAAIDFVRDTPPDGAVILTITGDEEGDATDGTVALLDWMEAQGEVMTHCLVGEPTSPNHMGEAMKIGRRGSMNVWFTFTGVQGHSAYPHRANNPLTAMARLMDTLASHELDAGNDHFDPSNFAIVTMDTGNPATNVIPAQCRAAVNIRFNDHHSGSSLTEWIDREVAKVVGDTGIRIETKVKISGESFITPPGELSDLIARAVKAETGQTPEMSTSGGTSDARFMKSHCPVAEFGLVGKTMHQVDEKVPVADIIQLKAIYARMLADYFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RHL4</accession>
    <name>A0A1M5RHL4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Ureidoglycolate lyase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2594</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(S)-ureidoglycolate = glyoxylate + urea</text>
            <dbReference type="Rhea" id="RHEA:11304"/>
            <dbReference type="ChEBI" id="CHEBI:16199"/>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
            <dbReference type="ChEBI" id="CHEBI:57296"/>
            <dbReference type="EC" id="4.3.2.3"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25754.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901726.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2594"/>
    <dbReference type="EnsemblBacteria" id="SHH25754">
        <property type="protein sequence ID" value="SHH25754"/>
        <property type="gene ID" value="SAMN05444003_2594"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004848">
        <property type="term" value="F:ureidoglycolate hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050385">
        <property type="term" value="F:ureidoglycolate lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000256">
        <property type="term" value="P:allantoin catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006144">
        <property type="term" value="P:purine nucleobase metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.480">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007247">
        <property type="entry name" value="Ureidogly_lyase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024060">
        <property type="entry name" value="Ureidoglycolate_lyase_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21221">
        <property type="entry name" value="PTHR21221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04115">
        <property type="entry name" value="Ureidogly_lyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017306">
        <property type="entry name" value="Ureidogly_hydro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-0659">Purine metabolism</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH25754.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="163" mass="17635" checksum="23A21CB1C8D3BB18" modified="2017-03-15" version="1">MTEIVAQPMSIEAFALFGDVIDCAGDPDKIINQGKCGRYHDRAVMDFSDGHAGISLFRAEPRSFPYTLELLERHPYGSQAFVPMSEHGFLVIVAPDVGGKPGTPLAFLTEPGQAINFHRGTWHGVLTPLHAPGLFAVVDRIGDGANLEEVWLDQPVTITAPPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RLT2</accession>
    <name>A0A1M5RLT2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2642</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26813.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901805.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2642"/>
    <dbReference type="EnsemblBacteria" id="SHH26813">
        <property type="protein sequence ID" value="SHH26813"/>
        <property type="gene ID" value="SAMN05444003_2642"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009964">
        <property type="entry name" value="DUF1491"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07372">
        <property type="entry name" value="DUF1491"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH26813.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="108" mass="11966" checksum="0FA4C83FE3DF0D53" modified="2017-03-15" version="1">MRLTAEIWVSAYIKRLSLLEIPAFVVAKGDATAGAVLVKMNTLDGQACCYQRSFDLMSGERTWVVLSEGDESAVDTSIQKQCGFDPDLWVIEVEDREGRHLLGEDGLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RYI1</accession>
    <name>A0A1M5RYI1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="11 12">ATP synthase subunit a</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">ATP synthase F0 sector subunit a</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">F-ATPase subunit 6</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">atpB</name>
        <name evidence="13" type="ORF">SAMN05444003_2761</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11 12">Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11 12">Cell membrane</location>
            <topology evidence="11 12">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 11 12">Belongs to the ATPase A chain family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31295.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902036.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2761"/>
    <dbReference type="EnsemblBacteria" id="SHH31295">
        <property type="protein sequence ID" value="SHH31295"/>
        <property type="gene ID" value="SAMN05444003_2761"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045263">
        <property type="term" value="C:proton-transporting ATP synthase complex, coupling factor F(o)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01393">
        <property type="entry name" value="ATP_synth_a_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000568">
        <property type="entry name" value="ATP_synth_F0_asu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023011">
        <property type="entry name" value="ATP_synth_F0_asu_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045083">
        <property type="entry name" value="ATP_synth_F0_asu_bact/mt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035908">
        <property type="entry name" value="F0_ATP_A_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11410">
        <property type="entry name" value="PTHR11410"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00119">
        <property type="entry name" value="ATP-synt_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00123">
        <property type="entry name" value="ATPASEA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81336">
        <property type="entry name" value="SSF81336"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01131">
        <property type="entry name" value="ATP_synt_6_or_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00449">
        <property type="entry name" value="ATPASE_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 11" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="11" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 11 12" id="KW-0138">CF(0)</keyword>
    <keyword evidence="6 11 12" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="8 11 12" id="KW-0406">Ion transport</keyword>
    <keyword evidence="9 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 11 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 11" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 11 12" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="38"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="63"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="93"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="124"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="160"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="198"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="225"/>
            <end position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022547"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01393"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU000483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHH31295.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="250" mass="27042" checksum="3A8B3B1E37D3A017" modified="2017-03-15" version="1">MATEGKEDGGLVFHPLDQFIVKPLFGDGPVAWYTPTNVTLWMGIGLLCIILLFVVGSRGRAIVPTRVQSIGELIYGFIYKMVEDVTGKDGVKYFPYIMTLFVFILFANYLALLPMSYSPTSMIAVTAVLGFGVFIAVTILGFVKNGAAFLGLFWMSDAPAILRPIIAVIEVISYFVRPVSHSIRLAGNIMAGHAVIKVFAGFAALTLVSPVAILGITAIYGLEVLVAGIQAYVFTILTCVYLKDALHPSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RZ73</accession>
    <name>A0A1M5RZ73_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Sulfotransferase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2773</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31536.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902057.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2773"/>
    <dbReference type="EnsemblBacteria" id="SHH31536">
        <property type="protein sequence ID" value="SHH31536"/>
        <property type="gene ID" value="SAMN05444003_2773"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008146">
        <property type="term" value="F:sulfotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016051">
        <property type="term" value="P:carbohydrate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018011">
        <property type="entry name" value="Carb_sulfotrans_8-10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005331">
        <property type="entry name" value="Sulfotransferase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12137">
        <property type="entry name" value="PTHR12137"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03567">
        <property type="entry name" value="Sulfotransfer_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH31536.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="272" mass="31598" checksum="0D781445E9C5B4F6" modified="2017-03-15" version="1">MGFPGTWMTESESVVYRVVPKCACSTIGQIMYYSDHGEFFDGDIHDAKGGMHKWALEDSQPLITANIESHKSYAFTCVRNPYTRILSSFFDKICGIQRNGKRYRGNLVPLLIQKYGIEVGDPETGFEFDQIKSFRRFLLFARDTIRWRRPMEPDIHWSAMSGHISTFIVNGGKYDRIFWTEHFNDGMKAVLDEIETPKPVDITKIPRFNESEGHGPKRAFPVEDYFDDLSMHLVYEIYKRDFQLFKYDFEDPSNKMPTGEIDLTEVHAKLGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S0B8</accession>
    <name>A0A1M5S0B8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">MoxR-like ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2789</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31874.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902078.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2789"/>
    <dbReference type="EnsemblBacteria" id="SHH31874">
        <property type="protein sequence ID" value="SHH31874"/>
        <property type="gene ID" value="SAMN05444003_2789"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011703">
        <property type="entry name" value="ATPase_AAA-3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041628">
        <property type="entry name" value="ChlI/MoxR_AAA_lid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07726">
        <property type="entry name" value="AAA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17863">
        <property type="entry name" value="AAA_lid_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_3" evidence="1">
        <location>
            <begin position="48"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="domain" description="AAA_lid_2" evidence="2">
        <location>
            <begin position="256"/>
            <end position="319"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17863"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH31874.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="334" mass="35832" checksum="68784F27581C4C20" modified="2017-03-15" version="1">MADAENLVAEIEALGEKLGEARASISERFIGQERVVDLTLSALICGGHAVLIGLPGLGKTRLVDTLSTVMGLDGNRIQFTPDLMPADILGSEILDTDADGARSFRFVEGPIFCQLLMADEINRASPRTQSALLQAMQEKEVTIAGAHRPLGTPFHVLATQNPIEQEGTYPLPEAQLDRFLVQIDVPYPDRETERDILIATTGATENESTSVFTSEELLAAQTLLRRMPVGDNIVEMILDLVRKCRPDADAPETVRASVSWGPGPRAAQALMLTVRAAALLDGRLAPSAEDVQTMAVPVLKHRMALSFAARARSEDLDALIETLAADLTSGSAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S4P9</accession>
    <name>A0A1M5S4P9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Muconolactone D-isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2854</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33464.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902180.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2854"/>
    <dbReference type="EnsemblBacteria" id="SHH33464">
        <property type="protein sequence ID" value="SHH33464"/>
        <property type="gene ID" value="SAMN05444003_2854"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026029">
        <property type="entry name" value="MLI_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02426">
        <property type="entry name" value="MIase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MIase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02426"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH33464.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="107" mass="11979" checksum="07882AA1FFFD0029" modified="2017-03-15" version="1">MLYKIDFTVEYDATMAQQGLLGVWGEEAEAALGAKSTGVVKDLWKVVGERKVVAIVDVDTPDALDQILFDLPIMQKMGHHVQVEVKSLRRYEDFAEDVRSRIGREAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SCX7</accession>
    <name>A0A1M5SCX7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2894</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36138.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH36138">
        <property type="protein sequence ID" value="SHH36138"/>
        <property type="gene ID" value="SAMN05444003_2894"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH36138.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="272" mass="30374" checksum="DB7EF74B5C534147" modified="2017-03-15" version="1">MPSQWTPEQKLFPHQVGFTCPPFDFDAAPSDFLRIAPRSVGVHGWMLHDPDYQHGLDQRKKNFGMLDDFVHCMARNGVDVAGQVGSNWVHASGLGVEGIRQHCEDLSDKHGVRFHMAGYAMVEALRAMNVEKVALNAAYHWPAWWQGTIGFLKEAGFDVLWAGNFHDQGWFESQEAVNAKRWIFDGDLAQKSFEYVAEQAPTADAYLINGMCNFRSGPDGVPERPLHLTVGLEASLGKPVIGHDTALYWRIFKSLGLKPTSSHGRLLASLEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SD53</accession>
    <name>A0A1M5SD53_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2881</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH35843.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2881"/>
    <dbReference type="EnsemblBacteria" id="SHH35843">
        <property type="protein sequence ID" value="SHH35843"/>
        <property type="gene ID" value="SAMN05444003_2881"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH35843.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="31" mass="3435" checksum="2B24DC61F6A22316" modified="2017-03-15" version="1" fragment="single">IVKCDSGNAKMPVITMDPVIIKDRFMKAIEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SGP8</accession>
    <name>A0A1M5SGP8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2959</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37659.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902380.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH37659">
        <property type="protein sequence ID" value="SHH37659"/>
        <property type="gene ID" value="SAMN05444003_2959"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH37659.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="91" mass="9884" checksum="C9B3552D8715904A" modified="2017-03-15" version="1">MKNLTVPKLFDLLDDGPLAIVLGAGSSKDYGLPTWQELKLDVLENLSIRPDRLGISQMAAKRSIQAIRDQPELTLDRIASGLDGIADRAAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SS03</accession>
    <name>A0A1M5SS03_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative iron-regulated protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_3068</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41240.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902600.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3068"/>
    <dbReference type="EnsemblBacteria" id="SHH41240">
        <property type="protein sequence ID" value="SHH41240"/>
        <property type="gene ID" value="SAMN05444003_3068"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1420.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018976">
        <property type="entry name" value="Imelysin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038352">
        <property type="entry name" value="Imelysin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09375">
        <property type="entry name" value="Peptidase_M75"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012725624" evidence="2">
        <location>
            <begin position="22"/>
            <end position="420"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M75" evidence="3">
        <location>
            <begin position="35"/>
            <end position="391"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF09375"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH41240.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="420" mass="44453" checksum="07DD8FECEF168304" modified="2017-03-15" version="1">MKRVYLATTAVAVAFTSPAFAVEKAAILDNYADIAQAGYEDSLATAQVLQAAVNALVESPSAENLEAAKAAWLAARVPYQQTEVFRFGNAIVDDWEGKVNAWPLDEGLIDYVDASYGGPSDENAFAVLNVVANAKLDLSGAMVDASAITPALLEETLQEADGVEANVATGYHAIEFLLWGQDLNGHGAGAGERPWTDYAMGDDCTNGNCDRRGEYLQAATDLLVSDLEWMAAQWADGGEARSSVMADEDAGIIAMLTGMGSLSYGETAGERMRLGVMLNDPEEEHSCFADNTHNDHYYNGVGIQNVYLGEYVRTDGSVVSGASLADLVAESNGDLNVEMQSKLSSAVMALGRIKHAAESGFAYDQMLEQGNAAGEALIMGGVNGLVDQTRSIERVVAALGVDAIEFEGSDSLDNPDAVFQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SWD7</accession>
    <name>A0A1M5SWD7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3159</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42814.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902736.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH42814">
        <property type="protein sequence ID" value="SHH42814"/>
        <property type="gene ID" value="SAMN05444003_3159"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="32"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH42814.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="62" mass="7192" checksum="C68F810A5459A336" modified="2017-03-15" version="1">MGAKAGAVLAVAVGWFLAFGIFMFLRTFENTMILWLWFLVVIAFLPRETYKVYKLLTQKDDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SWJ1</accession>
    <name>A0A1M5SWJ1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9 10">Protein translocase subunit SecY</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">secY</name>
        <name evidence="13" type="ORF">SAMN05444003_3161</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9 10">The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Component of the Sec protein translocase complex. Heterotrimer consisting of SecY, SecE and SecG subunits. The heterotrimers can form oligomers, although 1 heterotrimer is thought to be able to translocate proteins. Interacts with the ribosome. Interacts with SecDF, and other proteins may be involved. Interacts with SecA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell membrane</location>
            <topology evidence="9">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1 11">Membrane</location>
            <topology evidence="1 11">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9 12">Belongs to the SecY/SEC61-alpha family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42856.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902739.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3161"/>
    <dbReference type="EnsemblBacteria" id="SHH42856">
        <property type="protein sequence ID" value="SHH42856"/>
        <property type="gene ID" value="SAMN05444003_3161"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0065002">
        <property type="term" value="P:intracellular protein transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006605">
        <property type="term" value="P:protein targeting"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043952">
        <property type="term" value="P:protein transport by the Sec complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3370.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01465">
        <property type="entry name" value="SecY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026593">
        <property type="entry name" value="SecY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002208">
        <property type="entry name" value="SecY/SEC61-alpha"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030659">
        <property type="entry name" value="SecY_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023201">
        <property type="entry name" value="SecY_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10906">
        <property type="entry name" value="PTHR10906"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00344">
        <property type="entry name" value="SecY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004557">
        <property type="entry name" value="SecY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103491">
        <property type="entry name" value="SSF103491"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00967">
        <property type="entry name" value="3a0501s007"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00755">
        <property type="entry name" value="SECY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00756">
        <property type="entry name" value="SECY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 9 11" id="KW-0653">Protein transport</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 9 11" id="KW-0811">Translocation</keyword>
    <keyword evidence="4 9 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 9 11" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="27"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="79"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="123"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="155"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="186"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="214"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="272"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="313"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="363"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="397"/>
            <end position="415"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005751"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01465"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU000537"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU003484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU004349"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHH42856.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="451" mass="48837" checksum="D1341480775C9B72" modified="2017-03-15" version="1">MASAAEQMAQNMSWGAIGKATELRQRIFFTIGLLIVYRLGTYIPVPGIDTAQLQAFMAEAQAGIGGILSMFTGGALSRMGIFALGIMPYISASIIVQLLGSMWEPLKQLKKEGEQGRRKLSQYTRYGTVVLATAQAYGLAVSLEAGGLAADPGLFFRMSCIITIVGGTMFLMWLGEQITARGIGNGISLIIFVGIIAEIPAAMAQFLSQGRSGAISPAVIVGVIVMVIAVLTFVVFMERSLRKVHIQYPRQQRGMKVYDGSSSHLPIKVNPAGVIPAIFASALLLLPTTISTFGGSSEVLNTILAYFGPGQPLYLIFFSAMIIFFTYFYTKEVAFKVDDVAENLKNQNGFVPGIRPGKRTAEYLDYVVTRILVLGSGYLALVALLPEILRAQLSIPFYFGGTSILIIVSVGMDTIQQIQSHLLAHQYEGLIEKSQLRGRRGGAKKRGPARR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SWZ7</accession>
    <name>A0A1M5SWZ7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3163</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42900.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902743.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3163"/>
    <dbReference type="EnsemblBacteria" id="SHH42900">
        <property type="protein sequence ID" value="SHH42900"/>
        <property type="gene ID" value="SAMN05444003_3163"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014955">
        <property type="entry name" value="DUF1826"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08856">
        <property type="entry name" value="DUF1826"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH42900.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="222" mass="23740" checksum="88C7A29CA28F2FFC" modified="2017-03-15" version="1">MSAVAEPLTAGVGICLDPAALSTLLEPDCAAAVWQREMSVDVQSWLASLPADSLPRGRVVAPVQTVGTIIEQLFEMAGAPRGIERDWLTADIVELAELFAEVVSAKYLRVRLDVITTNACRRFHVDAITARLVCTYRGTGTQYGVCEGEGDPARIETVATGAPILLRGTRWPAGEAPKVLHRSPPIEGTGEIRLVLVLDPVAVPDELDVYDAQSLANIGTLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SYE5</accession>
    <name>A0A1M5SYE5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">50S ribosomal protein L2</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rplB</name>
        <name evidence="9" type="ORF">SAMN05444003_3191</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Part of the 50S ribosomal subunit. Forms a bridge to the 30S subunit in the 70S ribosome.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the universal ribosomal protein uL2 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH43499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902788.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3191"/>
    <dbReference type="EnsemblBacteria" id="SHH43499">
        <property type="protein sequence ID" value="SHH43499"/>
        <property type="gene ID" value="SAMN05444003_3191"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01320_B">
        <property type="entry name" value="Ribosomal_L2_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022666">
        <property type="entry name" value="Rbsml_prot_L2_RNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014722">
        <property type="entry name" value="Rib_L2_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002171">
        <property type="entry name" value="Ribosomal_L2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005880">
        <property type="entry name" value="Ribosomal_L2_bac/org-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022669">
        <property type="entry name" value="Ribosomal_L2_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022671">
        <property type="entry name" value="Ribosomal_L2_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014726">
        <property type="entry name" value="Ribosomal_L2_dom3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008991">
        <property type="entry name" value="Translation_prot_SH3-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13691">
        <property type="entry name" value="PTHR13691"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00181">
        <property type="entry name" value="Ribosomal_L2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03947">
        <property type="entry name" value="Ribosomal_L2_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002158">
        <property type="entry name" value="Ribosomal_L2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01383">
        <property type="entry name" value="Ribosomal_L2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01382">
        <property type="entry name" value="Ribosomal_L2_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50104">
        <property type="entry name" value="SSF50104"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01171">
        <property type="entry name" value="rplB_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00467">
        <property type="entry name" value="RIBOSOMAL_L2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 6 9" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 6" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="Ribosomal_L2_C" evidence="8">
        <location>
            <begin position="124"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="224"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="7">
        <location>
            <begin position="256"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM01382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH43499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="280" mass="30437" checksum="A56B1A95701D2290" modified="2017-03-15" version="1">MALKSYKPTTPGQRGLVLIDRSELWKGRPVKSLTQGLTKSGGRNNTGRITSRRIGGGAKRLYRIVDFKRTKQDMSAVVARIEYDPNRTAFIALIQYEDGTQNYILAPQRLAVGDKVISAAKADIKPGNAMPFSGMPIGTIVHNIELKPGKGGQIARAAGTYAQFVGRDGGYAQIRLSSGELRLVRQECMATVGAVSNPDNSNQNYGKAGRMRHKGIRPSVRGVAMNPIDHPHGGGEGRTSGGRTPVTPWGKDTKGKRTRNKNKASQKLIIRSRHAKKKGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T4R9</accession>
    <name>A0A1M5T4R9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, GntR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3236</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45682.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902892.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3236"/>
    <dbReference type="EnsemblBacteria" id="SHH45682">
        <property type="protein sequence ID" value="SHH45682"/>
        <property type="gene ID" value="SAMN05444003_3236"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1410.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028978">
        <property type="entry name" value="Chorismate_lyase_/UTRA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011663">
        <property type="entry name" value="UTRA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07702">
        <property type="entry name" value="UTRA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00035">
        <property type="entry name" value="HTHGNTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00866">
        <property type="entry name" value="UTRA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64288">
        <property type="entry name" value="SSF64288"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="1">
        <location>
            <begin position="19"/>
            <end position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH45682.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="251" mass="27896" checksum="479748B30B254023" modified="2017-03-15" version="1">MSDLVEELDATRWFREGKGARYRQLSRHITELIKSGSLAQEDQLPSERELADIAGISRVTVRKAIAELVDAGLIEQRQGAGSFVSEKGERFEQSLSSLVSFTENLQARGIRSSSEVLLRGVFRPTPTETTILGLTPVQRASRIHRLRSGDGVPMALEYSSVPDDILPNPDRVSVSLYEVLRSRGTAPTRALQRVMAINATDRVAELLKLPDGTAVLQIERTAYLATGRPIEFTSGYYRSDVYDFVSELRLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T5X0</accession>
    <name>A0A1M5T5X0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Acetolactate synthase-1/2/3 large subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_3257</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the TPP enzyme family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46157.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902925.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3257"/>
    <dbReference type="EnsemblBacteria" id="SHH46157">
        <property type="protein sequence ID" value="SHH46157"/>
        <property type="gene ID" value="SAMN05444003_3257"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044281">
        <property type="term" value="P:small molecule metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012000">
        <property type="entry name" value="Thiamin_PyroP_enz_cen_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012001">
        <property type="entry name" value="Thiamin_PyroP_enz_TPP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045229">
        <property type="entry name" value="TPP_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011766">
        <property type="entry name" value="TPP_enzyme-bd_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18968">
        <property type="entry name" value="PTHR18968"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02775">
        <property type="entry name" value="TPP_enzyme_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00205">
        <property type="entry name" value="TPP_enzyme_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02776">
        <property type="entry name" value="TPP_enzyme_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="SSF52467"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0786">Thiamine pyrophosphate</keyword>
    <feature type="domain" description="TPP_enzyme_N" evidence="5">
        <location>
            <begin position="5"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="domain" description="TPP_enzyme_M" evidence="3">
        <location>
            <begin position="200"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="domain" description="TPP_enzyme_C" evidence="4">
        <location>
            <begin position="392"/>
            <end position="537"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007812"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362132"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH46157.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="563" mass="60718" checksum="A38953FE31180BC9" modified="2017-03-15" version="1">MTKRTGGVLLVDCLRALGARHSFGVPGESYLAILDALYDTSSTHGEAKASLDFTLCRNEGGASFMAAAYGKLTGAPGICFVTRGPGATNASIGVHTAMQDSSPMILFVGQVGTDMMEREAFQEVNYRAYFGSIAKWATEIEQVARIPEIIARAWHTAVTGRPGPVVVALPEDMLTDVSSAEPLRGPAKQSEAAPTEEAIAETRRILESAKRPLIFYGGCNWTSDGSKALQSFAEASDIPVLSVFRYQDQFDNHSPSFCGEAGVGMSPAIQDMMREADVILAINARFGENSTLGYSLLDVPQPKQRIIHVHGSDRELGKVYVPELAIHAGPNAFAAAMAKNPVSCDWSEWRSASRAGYESGFELPDLPSPVDMGKVSTFLRDRLPKDTILTNGAGNFTVWPNKFFKFGPNQRLLAPQAGAMGYGLPAAIAAKTVHPERTVVCFAGDGDFQMNCQELGSAMQSGAQPIVLILNNGTYGTIRMHQEKTYPERVSGTTLENPDFVMLAKSYGYHAERVESTEDFESAFERALASETGAVLDLNVSSEALTPRQSLSQMREVAKSTQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T6N2</accession>
    <name>A0A1M5T6N2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_3266</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46366.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902989.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3266"/>
    <dbReference type="EnsemblBacteria" id="SHH46366">
        <property type="protein sequence ID" value="SHH46366"/>
        <property type="gene ID" value="SAMN05444003_3266"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032823">
        <property type="entry name" value="BCA_ABC_TP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12399">
        <property type="entry name" value="BCA_ABC_TP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="6"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="38"/>
            <end position="45"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH46366.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="249" mass="26478" checksum="E92AD5E7FA2C7AF7" modified="2017-03-15" version="1">MSEPVLATRNLCKTFNALVATDDVSIDLKPGEIHAIIGPNGAGKSTLIGQICGGIKPDAGSVHLGDSDVTNFSTAERAQAGLGRTFQISALAMEDTVLENVLLGVVGRSAKPWRFWSPALKARDLIESSMAALERVGLAEVCDQVTANLSHGQRRQLEVAVALALTPKAFVMDEPMAGLGAEGSHSMTDFLSELRHEAPILLVEHDMDAVFALADRISVLVYGRIIASGSVDEIKASKKVREAYLGEET</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T7H2</accession>
    <name>A0A1M5T7H2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3279</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46689.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH46689">
        <property type="protein sequence ID" value="SHH46689"/>
        <property type="gene ID" value="SAMN05444003_3279"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH46689.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="38" mass="4082" checksum="F65D64A7DBE1E923" modified="2017-03-15" version="1">MRISSILDPKGGAARPPISMKVMVKLQVLGNFQALKSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T872</accession>
    <name>A0A1M5T872_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DnaA N-terminal domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3289</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'-TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46914.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902975.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3289"/>
    <dbReference type="EnsemblBacteria" id="SHH46914">
        <property type="protein sequence ID" value="SHH46914"/>
        <property type="gene ID" value="SAMN05444003_3289"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024633">
        <property type="entry name" value="DnaA_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038454">
        <property type="entry name" value="DnaA_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11638">
        <property type="entry name" value="DnaA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DnaA_N" evidence="2">
        <location>
            <begin position="152"/>
            <end position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00024640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF11638"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH46914.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="225" mass="25286" checksum="8792CB22D8C80D59" modified="2017-03-15" version="1">MLVAKPVGRDAATKKYDILSALATFGLSKDKHKQRQILRLMALITTRYNWQCDELSMGQAEIARLWSVDTRTVKREMARLRSLGWLVQKRQGARGRVSVYGLDLARVMADTQPTWDNIGPDFVQRMGAEPQQSDTNVIPFRNESAVEFSNDVWGRACKVLHVDDPSTFASWIALLKFGGDEAGQIVLVAPSRFHATYVTSHLQQRILYALRAQDPSISAVQIIAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TC47</accession>
    <name>A0A1M5TC47_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">VPLPA-CTERM protein sorting domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3318</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000010">
        <property type="protein sequence ID" value="SHH48190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH48190">
        <property type="protein sequence ID" value="SHH48190"/>
        <property type="gene ID" value="SAMN05444003_3318"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022472">
        <property type="entry name" value="VPLPA-CTERM"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03370">
        <property type="entry name" value="VPLPA-CTERM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012522426" evidence="2">
        <location>
            <begin position="22"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="177"/>
            <end position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH48190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="204" mass="21126" checksum="264D39601030B7A1" modified="2017-03-15" version="1">MFKGLTIAVAASISLAGSVFAATVDSAATGSNSIGGFSLVSTGTMTDVATIPNVWVDNDADSQWVWTDGIDNVANENIFLWQFDLTGFDATTAVLDGLWATDNYGTAFLNGNSIDELEFGYDSFGELHVVSAAGAPPFVEGQNDLVFVVTNGYVDDPQRNPGPGGFRASVTVSATPVPLPAGGLLLIAGLGALGTLRRLKKTTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TD41</accession>
    <name>A0A1M5TD41_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Sulfopropanediol 3-dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_3327</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="7">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the histidinol dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000013">
        <property type="protein sequence ID" value="SHH48624.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072903051.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000013.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3327"/>
    <dbReference type="EnsemblBacteria" id="SHH48624">
        <property type="protein sequence ID" value="SHH48624"/>
        <property type="gene ID" value="SAMN05444003_3327"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004399">
        <property type="term" value="F:histidinol dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06572">
        <property type="entry name" value="Histidinol_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02228">
        <property type="entry name" value="Sulfopropanediol_dehydrog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001692">
        <property type="entry name" value="Histidinol_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022695">
        <property type="entry name" value="Histidinol_DH_monofunct"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012131">
        <property type="entry name" value="Hstdl_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043678">
        <property type="entry name" value="Sulfopropanediol_dehydrog_HpsN"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21256">
        <property type="entry name" value="PTHR21256"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00815">
        <property type="entry name" value="Histidinol_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000099">
        <property type="entry name" value="Histidinol_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00083">
        <property type="entry name" value="HOLDHDRGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00069">
        <property type="entry name" value="hisD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00611">
        <property type="entry name" value="HISOL_DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0520">NAD</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 7" id="KW-0862">Zinc</keyword>
    <feature type="active site" description="Proton acceptor" evidence="4">
        <location>
            <position position="313"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="4">
        <location>
            <position position="314"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="113"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="175"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="198"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="221"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="243"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="246"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="314"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="347"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="401"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="406"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="429"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000099-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000099-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000099-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000099-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH48624.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="429" mass="45607" checksum="25CDEA9A4697378B" modified="2017-03-15" version="1" fragment="single">KKAELTSSSGASDVHDTVVSILSEIEAGGDAAALEYAAKFDRYEGNVILTQDEIDAAIELVPEKLKADIRFAHDNVKRFAELQKSTVADVEMEIQPGFVAGQKAIPVDAAGCYVPGGRYSHIASAIMTVTTAKVAGCKHITACSPPRPGVGVAPAIIYAAHICGADTIMAMGGVQGVAAMTFGLFGLPKANILVGPGNQFVAEAKRILFGRVGIDMIAGPTDSLILADKDADPHIVATDLVSQAEHGYNSPVWLVTDDRALAEDVMARVPALIDDLPELNGDNARAAWRDYAEVIVCADREEMAATSDAYAPEHLTVQAADIDWWLERLTCYGSLFLGEETTVSYGDKASGTNHVLPTSGAANYTGGLSVHKYMKIVTWQRATREASKDVAIATARISRLEGMEGHARAADVRLAKYFPGQNFDLTAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L1V2</accession>
    <name>A0A1M5L1V2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1 4">Thymidylate synthase</fullName>
            <shortName evidence="4">TS</shortName>
            <shortName evidence="4">TSase</shortName>
            <ecNumber evidence="1 4">2.1.1.45</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">thyA</name>
        <name evidence="6" type="ORF">SAMN05444003_0049</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the reductive methylation of 2'-deoxyuridine-5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>(6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + dUMP = 7,8-dihydrofolate + dTMP</text>
            <dbReference type="Rhea" id="RHEA:12104"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:57451"/>
            <dbReference type="ChEBI" id="CHEBI:63528"/>
            <dbReference type="ChEBI" id="CHEBI:246422"/>
            <dbReference type="EC" id="2.1.1.45"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4">Pyrimidine metabolism; dTTP biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the thymidylate synthase family. Bacterial-type ThyA subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.45" evidence="1 4"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58966.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898381.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0049"/>
    <dbReference type="EnsemblBacteria" id="SHG58966">
        <property type="protein sequence ID" value="SHG58966"/>
        <property type="gene ID" value="SAMN05444003_0049"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00575"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004799">
        <property type="term" value="F:thymidylate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006231">
        <property type="term" value="P:dTMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006235">
        <property type="term" value="P:dTTP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00351">
        <property type="entry name" value="TS_Pyrimidine_HMase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.572.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00008">
        <property type="entry name" value="Thymidy_synth_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045097">
        <property type="entry name" value="Thymidate_synth/dCMP_Mease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023451">
        <property type="entry name" value="Thymidate_synth/dCMP_Mease_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036926">
        <property type="entry name" value="Thymidate_synth/dCMP_Mease_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000398">
        <property type="entry name" value="Thymidylate_synthase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11548">
        <property type="entry name" value="PTHR11548"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00303">
        <property type="entry name" value="Thymidylat_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00108">
        <property type="entry name" value="THYMDSNTHASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55831">
        <property type="entry name" value="SSF55831"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03284">
        <property type="entry name" value="thym_sym"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 4" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-0545">Nucleotide biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thymidylat_synt" evidence="5">
        <location>
            <begin position="2"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="4">
        <location>
            <position position="145"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="21"/>
        </location>
        <ligand>
            <name>dUMP</name>
            <dbReference type="ChEBI" id="CHEBI:246422"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="51"/>
        </location>
        <ligand>
            <name>(6R)-5,10-methylene-5,6,7,8-tetrahydrofolate</name>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="125"/>
            <end position="126"/>
        </location>
        <ligand>
            <name>dUMP</name>
            <dbReference type="ChEBI" id="CHEBI:246422"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="165"/>
            <end position="168"/>
        </location>
        <ligand>
            <name>dUMP</name>
            <dbReference type="ChEBI" id="CHEBI:246422"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="168"/>
        </location>
        <ligand>
            <name>(6R)-5,10-methylene-5,6,7,8-tetrahydrofolate</name>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="176"/>
        </location>
        <ligand>
            <name>dUMP</name>
            <dbReference type="ChEBI" id="CHEBI:246422"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="206"/>
            <end position="208"/>
        </location>
        <ligand>
            <name>dUMP</name>
            <dbReference type="ChEBI" id="CHEBI:246422"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="262"/>
        </location>
        <ligand>
            <name>(6R)-5,10-methylene-5,6,7,8-tetrahydrofolate</name>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG58966.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="263" mass="30088" checksum="05FC1FB882C9E9D4" modified="2017-03-15" version="1">MQEYLNALKTVMEQGVPSDDRTGTGTISHFGMQCRYDLRKGFPLVTTKKLHLKSIIHELLWFLDGDTNIKYLKDNGVSIWDEWADENGDLGPVYGHQWRSFPKPGGSTDQITNLIEQIKTNPDSRRLIVSAWNPGEVDDMALPPCHTLWQVRVQNGTMHLQLYQRSADMFLGVPFNIASYALLLEMLAHVTGNKAGEFIHTMGDAHIYSNHVEQVQTQLARDPREAPRLIIKRNVDRIFDFKFEDFEFEGYDPHPHIKAPVSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L3F1</accession>
    <name>A0A1M5L3F1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Small-conductance mechanosensitive channel</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_0075</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Mechanosensitive channel that participates in the regulation of osmotic pressure changes within the cell, opening in response to stretch forces in the membrane lipid bilayer, without the need for other proteins. Contributes to normal resistance to hypoosmotic shock. Forms an ion channel of 1.0 nanosiemens conductance with a slight preference for anions.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homoheptamer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell inner membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the MscS (TC 1.A.23) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59470.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898416.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0075"/>
    <dbReference type="EnsemblBacteria" id="SHG59470">
        <property type="protein sequence ID" value="SHG59470"/>
        <property type="gene ID" value="SAMN05444003_0075"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008381">
        <property type="term" value="F:mechanosensitive ion channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010920">
        <property type="entry name" value="LSM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045275">
        <property type="entry name" value="MscS_archaea/bacteria_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006685">
        <property type="entry name" value="MscS_channel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011066">
        <property type="entry name" value="MscS_channel_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011014">
        <property type="entry name" value="MscS_channel_TM-2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023408">
        <property type="entry name" value="MscS_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30221">
        <property type="entry name" value="PTHR30221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00924">
        <property type="entry name" value="MS_channel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50182">
        <property type="entry name" value="SSF50182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82689">
        <property type="entry name" value="SSF82689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82861">
        <property type="entry name" value="SSF82861"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0407">Ion channel</keyword>
    <keyword evidence="8" id="KW-0406">Ion transport</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0346">Stress response</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="61"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="94"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008017"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU369025"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG59470.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="276" mass="30163" checksum="1993E1D508CED3C7" modified="2017-03-15" version="1">MGDNLNTDAIAQFFSVENLVGILGNVVAAILILIVGFWLAGWVKRRFVKMGTKYPDVDPTLLAFGGNIARYIVLGFAFLFVLNTFGVQTTSIVAIIGAAGLAIGLALQGTLSNVAAGVMIIIFRPFRLGDFVDLNGNLGTVKDITLNYIELASADNVQTIIPNAQVWGNTIVNYSSYDTRRAEWVFGVGYGADLKKTEETIRATIMSDERSLSDPEPFIQVNALGESSVDFLVRVWCASDDYFGYQADMKRKVKEALDANDIPIPFPTRTIIQTTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LA57</accession>
    <name>A0A1M5LA57_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Chloride channel protein, CIC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_0189</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61982.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898558.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0189"/>
    <dbReference type="EnsemblBacteria" id="SHG61982">
        <property type="protein sequence ID" value="SHG61982"/>
        <property type="gene ID" value="SAMN05444003_0189"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005247">
        <property type="term" value="F:voltage-gated chloride channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014743">
        <property type="entry name" value="Cl-channel_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001807">
        <property type="entry name" value="Cl-channel_volt-gated"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00654">
        <property type="entry name" value="Voltage_CLC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00762">
        <property type="entry name" value="CLCHANNEL"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81340">
        <property type="entry name" value="SSF81340"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0129">CBS domain</keyword>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="37"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="83"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="212"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="255"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="299"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="332"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="363"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="391"/>
            <end position="416"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="425"/>
            <end position="443"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="7">
        <location>
            <begin position="494"/>
            <end position="555"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG61982.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="562" mass="59377" checksum="DC549A7B36E61212" modified="2017-03-15" version="1">MSAPIRSAAKERVDHLVHKCNRGWHVLKKQGPNQIQFWFIALAIGIAAGIVTVLFRLGIDWLQRLVYGADDINTLHSFAASLLWYHLLIVPMIGGLVVGIIFDRFTSDGRVRSVADVIEGAALNEGRVEVRQGIASGFASLITLSTGGSTGREGPVVHLAAMISTAVSKVIRADGVTGRDLLGCAVAAAVSASFNAPIAGALFALEVVLRHFAVHAFAPIVIASVAGTVISRSVFGDVTEFMLPVANTLEFYVELPAYLILGAISGLVAVLLMQAVFWAEDFGNFFSEKFRIHNVLRPAIAGAGLGALAIYFPHIIGVGYETTSLALTGDLVLHEAIVFVALKIVAVAITMGGRMGGGIFSPALMVGALTGLAFGIIATSIFPTVSGEETLYALAGMGAVAAAVLGAPISTTLIVFELTGDWQTGLAVMVSVSLSTALASSLVDRSFFLTQLERRNVHLAAGPQAYLLATFKVASIMRERGSENGAPDEACWDLMSDGVYIDGNATLEQAMPMFEQANHRFVPVVTLGDQDSPPELWGALFQVDALKAMNKALSETAAEEHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LB88</accession>
    <name>A0A1M5LB88_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0201</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898582.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG62277">
        <property type="protein sequence ID" value="SHG62277"/>
        <property type="gene ID" value="SAMN05444003_0201"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012590040" evidence="1">
        <location>
            <begin position="21"/>
            <end position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG62277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="182" mass="20666" checksum="3D8639CFD9F22B65" modified="2017-03-15" version="1">MKTLFAALSLTIAIAFPVIAQDRDGNDTPGEWIVTHKKAFGLWDSFCDERTTGDLLEERCYVRYVDVFSKRPNFGATFFFLTPGEIEFGLERGMEFEPDGFRVERDGEVVWQETRRPCLAGRECKLTAQDAADFEALLEKGGEMRFTFTDPDGNPCDLTWNIDRMDEILADFRAQAAARGLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LBK6</accession>
    <name>A0A1M5LBK6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0206</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62398.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900342.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0206"/>
    <dbReference type="EnsemblBacteria" id="SHG62398">
        <property type="protein sequence ID" value="SHG62398"/>
        <property type="gene ID" value="SAMN05444003_0206"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010864">
        <property type="entry name" value="D-lyxose_isomer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07385">
        <property type="entry name" value="Lyx_isomer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG62398.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="228" mass="25561" checksum="91B2BE269F375360" modified="2017-03-15" version="1">MKRSRINDIMAEADEMIRHYGFVLPPWAYWSPDEFVSRKDEASRVISARNGWDITDYGDGDFDKMGLFLFTLRNGRLDDLQRGGGMCYAEKLLISRQDQLSPMHTHVIKAEDIINRGGATLVVELFGSDADGNFAEDKGGTVYCDGIQRDFSAGEKLKLAPGESVTLMPGDWHAFWGEGGDVLIGEVSTVNDDETDNIFREPIGRFAEIEEDVAPTHLLVSDYRTWLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LBY2</accession>
    <name>A0A1M5LBY2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0199</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898577.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0199"/>
    <dbReference type="EnsemblBacteria" id="SHG62229">
        <property type="protein sequence ID" value="SHG62229"/>
        <property type="gene ID" value="SAMN05444003_0199"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025234">
        <property type="entry name" value="DUF4177"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13783">
        <property type="entry name" value="DUF4177"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="83"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="98"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG62229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="138" mass="15297" checksum="4327259D73E71986" modified="2017-03-15" version="1">MIYEYKVVPAPTKGLKAKGLKTTADRFSLAFETAINEYAKEGWEFLRAETLPSEEREGLMSKTTMYQNVLVFKRPAQEEAEVEIAGSLPPPLDEPEVQADEAGVEEFETEEASVSDEDTSDVTDGSDGSLVEEDTQRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LDP1</accession>
    <name>A0A1M5LDP1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0222</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62829.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898622.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0222"/>
    <dbReference type="EnsemblBacteria" id="SHG62829">
        <property type="protein sequence ID" value="SHG62829"/>
        <property type="gene ID" value="SAMN05444003_0222"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="4"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="36"/>
            <end position="43"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG62829.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="252" mass="27711" checksum="CB421FE63F537678" modified="2017-03-15" version="1">MAILQVKGINKRFGGLQALGDVNLSVEENSVHAIIGPNGAGKSTLLNVLVGKLIPDSGSVMFDGQSVLGRKPHEINQLGISRVFQTPEIFGDLTVFENVMIPCFAKRDGAFKMNGIGDVKKEKDILEQAEAILDDVSMLDKRHMHSASLSRGDKRRLEMAMCLVQEPRLLLLDEPTAGMARADTNNTIDLLKEIHEKRDITMAIIEHDMHVVFSLAERITVLAQGTPLVEETPENIKGHPKVREAYLGEAQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LET6</accession>
    <name>A0A1M5LET6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Response regulator receiver and ANTAR domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0249</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63476.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898672.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0249"/>
    <dbReference type="EnsemblBacteria" id="SHG63476">
        <property type="protein sequence ID" value="SHG63476"/>
        <property type="gene ID" value="SAMN05444003_0249"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005561">
        <property type="entry name" value="ANTAR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008327">
        <property type="entry name" value="Sig_transdc_resp-reg_antiterm"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03861">
        <property type="entry name" value="ANTAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036382">
        <property type="entry name" value="RR_antiterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01012">
        <property type="entry name" value="ANTAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50921">
        <property type="entry name" value="ANTAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="6"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="ANTAR" evidence="3">
        <location>
            <begin position="126"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG63476.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="194" mass="21486" checksum="1604752D4BB769CA" modified="2017-03-15" version="1">MTTALRILVVEPDENRLREIVDALTDVGWTDVRALPEISSIARTVQDYEPDIVLIDLANPDRDTLENITHASGAGKRAVALFVDQTDDALTSAALKAGVSAYVVDGLDRNRIKSVLETAIARFKVIRQIQSELDAAKRALEDRKTIDRAKGFLMRQRSLSEEEAYRLLRKTAMDQGRRVIDVAQALVTAADLLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LG78</accession>
    <name>A0A1M5LG78_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">tRNA-dihydrouridine(20/20a) synthase</fullName>
            <ecNumber evidence="6">1.3.1.91</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">U20-specific dihydrouridine synthase</fullName>
            <shortName evidence="6">U20-specific Dus</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">tRNA-dihydrouridine synthase A</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">dusA</name>
        <name evidence="11" type="ORF">SAMN05444003_0271</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>5,6-dihydrouridine(20) in tRNA + NAD(+) = H(+) + NADH + uridine(20) in tRNA</text>
            <dbReference type="Rhea" id="RHEA:53340"/>
            <dbReference type="Rhea" id="RHEA-COMP:13533"/>
            <dbReference type="Rhea" id="RHEA-COMP:13534"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:74443"/>
            <dbReference type="EC" id="1.3.1.91"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>5,6-dihydrouridine(20) in tRNA + NADP(+) = H(+) + NADPH + uridine(20) in tRNA</text>
            <dbReference type="Rhea" id="RHEA:53336"/>
            <dbReference type="Rhea" id="RHEA-COMP:13533"/>
            <dbReference type="Rhea" id="RHEA-COMP:13534"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:74443"/>
            <dbReference type="EC" id="1.3.1.91"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>5,6-dihydrouridine(20a) in tRNA + NAD(+) = H(+) + NADH + uridine(20a) in tRNA</text>
            <dbReference type="Rhea" id="RHEA:53348"/>
            <dbReference type="Rhea" id="RHEA-COMP:13535"/>
            <dbReference type="Rhea" id="RHEA-COMP:13536"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:74443"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>5,6-dihydrouridine(20a) in tRNA + NADP(+) = H(+) + NADPH + uridine(20a) in tRNA</text>
            <dbReference type="Rhea" id="RHEA:53344"/>
            <dbReference type="Rhea" id="RHEA-COMP:13535"/>
            <dbReference type="Rhea" id="RHEA-COMP:13536"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:74443"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 6 7">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the Dus family. DusA subfamily.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the dus family.</text>
    </comment>
    <dbReference type="EC" id="1.3.1.91" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63966.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898704.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0271"/>
    <dbReference type="EnsemblBacteria" id="SHG63966">
        <property type="protein sequence ID" value="SHG63966"/>
        <property type="gene ID" value="SAMN05444003_0271"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102264">
        <property type="term" value="F:tRNA-dihydrouridine20 synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd02801">
        <property type="entry name" value="DUS_like_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02041">
        <property type="entry name" value="DusA_subfam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035587">
        <property type="entry name" value="DUS-like_FMN-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001269">
        <property type="entry name" value="DUS_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004653">
        <property type="entry name" value="DusA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018517">
        <property type="entry name" value="tRNA_hU_synthase_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42907">
        <property type="entry name" value="PTHR42907"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01207">
        <property type="entry name" value="Dus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006621">
        <property type="entry name" value="Dus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00742">
        <property type="entry name" value="yjbN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01136">
        <property type="entry name" value="UPF0034"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6 7" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="3 6 7" id="KW-0288">FMN</keyword>
    <keyword evidence="6" id="KW-0521">NADP</keyword>
    <keyword evidence="5 6 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="4 6 7" id="KW-0819">tRNA processing</keyword>
    <keyword evidence="6" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="Dus" evidence="10">
        <location>
            <begin position="30"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="6 8">
        <location>
            <position position="115"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="32"/>
            <end position="34"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="85"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="154"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="186"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="226"/>
            <end position="228"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="248"/>
            <end position="249"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="site" description="Interacts with tRNA" evidence="6">
        <location>
            <position position="112"/>
        </location>
    </feature>
    <feature type="site" description="Interacts with tRNA; defines subfamily-specific binding signature" evidence="6">
        <location>
            <position position="198"/>
        </location>
    </feature>
    <feature type="site" description="Interacts with tRNA" evidence="6">
        <location>
            <position position="201"/>
        </location>
    </feature>
    <feature type="site" description="Interacts with tRNA; defines subfamily-specific binding signature" evidence="6">
        <location>
            <position position="314"/>
        </location>
    </feature>
    <feature type="site" description="Interacts with tRNA; defines subfamily-specific binding signature" evidence="6">
        <location>
            <position position="317"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02041"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRNR" id="PIRNR006621"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR006621-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF01207"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG63966.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="346" mass="37990" checksum="C5C5B9D9BE5C7CC2" modified="2017-03-15" version="1">MLEGASKNLGCGQVTEKTPQRLEHHARLSVAPMMDWTDRHCRYLHRRMSKHALLYTEMVTAPAVIHGDRERLLGFNETEHPVAVQLGGSDPKQLAEAARIAEDYGYDEINLNCGCPSDRVQSGSFGAILMETPALVAECCAQLIAAVDVPVTVKCRIGVDDQEPTEVLPDFLARVSSAGVGRFTIHARKAWLQGLSPKENRDIPPLDYPLVHEMKAVFPHLHLSINGGIESLDQAEPFLDALDGVMIGRAAYHTPSDILLDADRRIFGGRVGPTAEEVVMEMLPYIDQHLGAGGKLHHVTRHMLGLFQGRPGARMWRRYLSENAHKDGAGCDVVETALGFVTQQAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LH43</accession>
    <name>A0A1M5LH43_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">VPLPA-CTERM protein sorting domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0283</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64286.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898712.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG64286">
        <property type="protein sequence ID" value="SHG64286"/>
        <property type="gene ID" value="SAMN05444003_0283"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022472">
        <property type="entry name" value="VPLPA-CTERM"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03370">
        <property type="entry name" value="VPLPA-CTERM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013336542" evidence="2">
        <location>
            <begin position="22"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="167"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG64286.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="191" mass="20271" checksum="3A48A5DABDF79F46" modified="2017-03-15" version="1">MRIFSVLLTAFFLSFATSASAITVLYDFEQNLSDNQTSVDYIENGVTLTVSSTGGQVHRAGNGIGVRGNPEGARIGLGEQLTFTFDGYRIDSFTATIWERGSEDEQFIFGSDGLLTAFGGTNGVSLQTFTASLLNGASSFTIQGVVPNGPGNRGIKISNIQVELSEIPLPASSGLLLAAIMGLGFYKRRKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LIQ8</accession>
    <name>A0A1M5LIQ8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cytochrome P450</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0313</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the cytochrome P450 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64908.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898760.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0313"/>
    <dbReference type="EnsemblBacteria" id="SHG64908">
        <property type="protein sequence ID" value="SHG64908"/>
        <property type="gene ID" value="SAMN05444003_0313"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002397">
        <property type="entry name" value="Cyt_P450_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017972">
        <property type="entry name" value="Cyt_P450_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00359">
        <property type="entry name" value="BP450"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="SSF48264"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00086">
        <property type="entry name" value="CYTOCHROME_P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0349">Heme</keyword>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU000461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG64908.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="387" mass="43357" checksum="A85E649E60D5ADAF" modified="2017-03-15" version="1">MKTFSQSPTDPNFVQNPYPFYDLARQSGDVFWWSDYEMVCALSRSAVSEALRDKRMGREAPPEFAPKIADHVQPFYDVEAHSMLELEPPRHTRLRGLVLRAFTSRRIASLEPEIEALARDLLANLGPEPFDLLETFAQPLPVTVIARLLGVPDDKADDLLAWSNAMVAMYQARRTREIEDAAVKATLEFKTYLSDVIAEKRQSPQDDLVSSLIAAEEDGEKLSKDELMTTVILLLNAGHEATVHTMGNGVKAMLEAGVTEVTPTLVEEIMRFDPPLHMFTRWVYEDIEFHGAQLKRGDQVACLLGAANRDPVIYDSPNSFIPDRTAKAHTAFGGGIHFCVGAPLARLELLVGLRVLLEVMPNLRLVEPPEYADFYHFHGLKSLKVQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LLS8</accession>
    <name>A0A1M5LLS8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized conserved protein, contains ferritin-like DUF455 domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0349</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65599.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898804.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0349"/>
    <dbReference type="EnsemblBacteria" id="SHG65599">
        <property type="protein sequence ID" value="SHG65599"/>
        <property type="gene ID" value="SAMN05444003_0349"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007402">
        <property type="entry name" value="DUF455"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011197">
        <property type="entry name" value="UCP012318"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04305">
        <property type="entry name" value="DUF455"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF012318">
        <property type="entry name" value="UCP012318"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="SSF47240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="38"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="57"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG65599.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="273" mass="30742" checksum="5E2C10C3D76B96A9" modified="2017-03-15" version="1">MKPLREMAVDVLSTADGRTKTALSRQYAAEWQAARKAGELPELGRANPPDFPARPSEPELLDPRDVPKRKPGSEAGRLALLHAVAHIELNAVDLHWDIIARFPDIEMPIGFFDDWVKAADEESKHFNLMCDCLEALGSHYGALPAHAGMWRAAEDTTGDIMARLAVVPMVLEARGLDVTPGMIKLFKQSKNQQAIDALEVIYAEEVHHVAYGSKWFNFLCGRDNLDPTEVFHRLVRKYFHSTLKPPFNEEKRAEAGLPPDFYWPLTEEYEARA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LM11</accession>
    <name>A0A1M5LM11_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0364</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65940.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898829.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0364"/>
    <dbReference type="EnsemblBacteria" id="SHG65940">
        <property type="protein sequence ID" value="SHG65940"/>
        <property type="gene ID" value="SAMN05444003_0364"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021323">
        <property type="entry name" value="DUF2927"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11150">
        <property type="entry name" value="DUF2927"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012409388" evidence="1">
        <location>
            <begin position="22"/>
            <end position="451"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG65940.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="451" mass="49196" checksum="A2A249C993DA1D2E" modified="2017-03-15" version="1">MINRLAALALTLLVACAPVQRDSALPTRAASIVQDLPPMRAFAPAPLVPPKRSNAEIARDFLDLSFRMESGKELPFMTRFEGPITVRLTGETSDQMLDDLHALLTRLRREAGINILMTNEDDASITVEAIPLNTLQGVAPRAACFVVPRVESWAEFSRKAGTSALDWSTLERRERASVFIPSDAAPQEVRDCLHEELAQAIGPLNDLYRLPDSIFNDDNIHTVLTGFDMLILRAYYAPEMRNGMTDAEALEVIPTVLARLNPAGRSISPQSRSATSREWIDAMATAVSSGSSQNRRRRAAQSAIAIGTDSGWSGPRQGFAYYAYGRLEVANDPQRALRAFDAAEALYRQSDNTDIHAAHIAVQKAAFTLASGDTDATLALTNAAIPVAEQHQNAALLSTLMMFKAEALDMRGNNDAADAVRLDSLGWARYGFGSDRNVQARLAEVASLRPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LM54</accession>
    <name>A0A1M5LM54_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0355</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65729.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0355"/>
    <dbReference type="EnsemblBacteria" id="SHG65729">
        <property type="protein sequence ID" value="SHG65729"/>
        <property type="gene ID" value="SAMN05444003_0355"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014922">
        <property type="entry name" value="DUF1801"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016786">
        <property type="entry name" value="YdeI_bac"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08818">
        <property type="entry name" value="DUF1801"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF021308">
        <property type="entry name" value="UCP021308"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1801" evidence="1">
        <location>
            <begin position="37"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08818"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG65729.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="212" mass="23437" checksum="FD990E775B056AB5" modified="2017-03-15" version="1">MSEARQMVKDVATYFEKGCGRCDRFDTKDCSALQWGEGLQELRSICLAQGLTETSKWGAPCYTFSSRNVAILAAFRKDFRLSFFEAGLLKDPESLLEKSGPNTAFADSFVFRDVSEVGQHVEIIGQYLTEAMSYAEQGLKGPKPELDLDMPEELAAALDADPTLAEAFHALTPGRQRGYVINLNGAKQSATRIARIEKFRDKILAGKGPLDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LMX7</accession>
    <name>A0A1M5LMX7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Predicted arabinose efflux permease, MFS family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0353</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898812.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0353"/>
    <dbReference type="EnsemblBacteria" id="SHG65683">
        <property type="protein sequence ID" value="SHG65683"/>
        <property type="gene ID" value="SAMN05444003_0353"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005828">
        <property type="entry name" value="MFS_sugar_transport-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00083">
        <property type="entry name" value="Sugar_tr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="7"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="37"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="69"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="97"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="131"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="156"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="200"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="235"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="264"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="289"/>
            <end position="311"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="323"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="355"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="199"/>
            <end position="420"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG65683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="420" mass="44878" checksum="35F9B4748FB9EC03" modified="2017-03-15" version="1">MIQVFNASWALFLGMFMLMIGNGLQGTLLGLRGELEGFSTFELSVVMSAYFVGFLFSSRTTPLLIQRVGHVRVFAALGSTVSAVLILYPVLTEPWAWTIGRVIIGFCFCGVYITAESWLNDASSNETRGKALSIYLMVQMAGIVAAQYIITQGDVSGFVLFIIPSVFVSLAFAPILLSIRPTPAFEQAKSMTMRELVSASPLACVGMFLLGGIFSAQFGMGAVYGTQAGLSVSQVSLFVSVIYIAALVAQWPIGWLSDRIDRRILIILTTLVGGLGGLIAFIWTGNFAIILVSAALVGGTSNPLYALLIAYANDYLEKEDMAAAAGGLLLINGVGAIAGPLIVGWMMETIGAEGFWLFTASLMLGVAGYAAWRMIQRPRGELDLEAVSYVPVSAATTQVAAEIAQEVYIETEEEEAQANA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LN49</accession>
    <name>A0A1M5LN49_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0389</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66507.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898863.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0389"/>
    <dbReference type="EnsemblBacteria" id="SHG66507">
        <property type="protein sequence ID" value="SHG66507"/>
        <property type="gene ID" value="SAMN05444003_0389"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.1140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003795">
        <property type="entry name" value="DUF192"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038695">
        <property type="entry name" value="Saro_0823-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37953">
        <property type="entry name" value="PTHR37953"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02643">
        <property type="entry name" value="DUF192"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012364139" evidence="1">
        <location>
            <begin position="20"/>
            <end position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG66507.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="154" mass="16959" checksum="E41DDAF7B599A96C" modified="2017-03-15" version="1">MIRKAVAAALFLLPSGVWASCDFDRVRVFGDWGQARFDVRVADEPAERSQGLMFVESMPTLEGMLFVYPQPQRATFWMRNTLIPLDMIFVAPNGEVLKIHENAIPLDETTIDGGLGIQYVLEINGGLASRLGISVGDVLQHPSIDQDAIKPCAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LSF8</accession>
    <name>A0A1M5LSF8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">CBS domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0450</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67916.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898956.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0450"/>
    <dbReference type="EnsemblBacteria" id="SHG67916">
        <property type="protein sequence ID" value="SHG67916"/>
        <property type="gene ID" value="SAMN05444003_0450"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd04623">
        <property type="entry name" value="CBS_pair_bac_euk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044725">
        <property type="entry name" value="CBSX3_CBS_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0129">CBS domain</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CBS" evidence="2">
        <location>
            <begin position="11"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="2">
        <location>
            <begin position="77"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG67916.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="144" mass="15230" checksum="96B69637A4DED4BE" modified="2017-03-15" version="1">MLVQQILSSKATQGVLSIGPDAPVSEAANLLSNNRIGTVVVSSDGHTLEGILSERDIVRELGKRGAGCLNDPVSDLMTKKIVTCTTADTADAVLEMMTNGRFRHLPVVDGDNMIGLISIGDVVKARLAELSMEKDALEGMIMGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LUW3</accession>
    <name>A0A1M5LUW3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Sodium/proton antiporter, CPA1 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_0484</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68690.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899005.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0484"/>
    <dbReference type="EnsemblBacteria" id="SHG68690">
        <property type="protein sequence ID" value="SHG68690"/>
        <property type="gene ID" value="SAMN05444003_0484"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015299">
        <property type="term" value="F:solute:proton antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006813">
        <property type="term" value="P:potassium ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006153">
        <property type="entry name" value="Cation/H_exchanger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038770">
        <property type="entry name" value="Na+/solute_symporter_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003148">
        <property type="entry name" value="RCK_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00999">
        <property type="entry name" value="Na_H_Exchanger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02254">
        <property type="entry name" value="TrkA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0406">Ion transport</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="38"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="67"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="99"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="125"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="166"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="192"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="226"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="282"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="308"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="340"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="370"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="domain" description="Na_H_Exchanger" evidence="6">
        <location>
            <begin position="26"/>
            <end position="397"/>
        </location>
    </feature>
    <feature type="domain" description="RCK N-terminal" evidence="7">
        <location>
            <begin position="409"/>
            <end position="491"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00999"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG68690.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="605" mass="64504" checksum="8B7D01448BFF15ED" modified="2017-03-15" version="1">MALETASDALQPVMAFALVGVLGVGSQWLAFRLRMPAIVLMLLAGILIGPVAGVFDPERDIGPLMSPMISIAVAIILFEGGLTLNFHSLQDAVKGVKRLVFVGAPLGWLTSALALHYVAGLNWESSVVFGGIMIVTGPTVIAPLLRTARLSKRPAALLQWEAIVNDPIGALAAVLAFSVVLVLTASTTLGEAIWSFVIGISVATALGFIGGYGIARSFREGWVPEYMKVPVLFVVLLAVFALSDFVLHESGLLAVTIMGIVIANSNLPSYGELLRFKEHATILLVSGVFILLAANIEFSALAQLNWRAVAFVLAMVLLARPITVLVSLTGSGIPYKEQILVAFTGPRGVVLVAVAGLFGERLFALGFEDAALIAPLAFVLVAFTVVLHGFTLAPFARALGLTGSDIPGVILVGGRPWTTAFAEVLQKSDVPVLMTDPNFGNLRTARTAGIETFSGDILSEAAEHRLELVSYTTIVAATDNDAYNTLVATDLAPEFGRDNVFQVMRDTSDSARHHLPTTLGGKGFGPEMTDREINALIRQGWGFGATRLTEEYTADQWRAENPEAHVFARIDPKGVIRFVQSDDDVKGAPDVRIVSLRPKTEVEAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LUY0</accession>
    <name>A0A1M5LUY0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Condensin subunit ScpA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0488</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68796.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899013.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0488"/>
    <dbReference type="EnsemblBacteria" id="SHG68796">
        <property type="protein sequence ID" value="SHG68796"/>
        <property type="gene ID" value="SAMN05444003_0488"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007059">
        <property type="term" value="P:chromosome segregation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003768">
        <property type="entry name" value="ScpA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33969">
        <property type="entry name" value="PTHR33969"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02616">
        <property type="entry name" value="SMC_ScpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0159">Chromosome partition</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG68796.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="263" mass="29835" checksum="73B118F4D7E394B3" modified="2017-03-15" version="1">MSEEFQEDVISVADRMAAEALIVDVGAFEGPLDLLLMLSRTQKVDLRQISILALAEQYLAFVEKAKQLRLELAADYLVMAAWLAFLKSRLLLPPDPTEEGPSGEELAAHLAFQLERLEAMRKAAAQLMARDQLGRDFFARGITEDVQRTRKVTYTATLLDLMQGYARIRTKDEFRPFVMDRDQVMTMEEALGRMRKMIGFAGDWTDLTSYLPEGWETDPTRRRTATAATFAATLELAKEGKVELRQGDTFAPIQIRKRDPRDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LV39</accession>
    <name>A0A1M5LV39_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0494</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899019.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0494"/>
    <dbReference type="EnsemblBacteria" id="SHG68917">
        <property type="protein sequence ID" value="SHG68917"/>
        <property type="gene ID" value="SAMN05444003_0494"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.790.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009945">
        <property type="entry name" value="ATPase_inh_sub_z"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038293">
        <property type="entry name" value="DUF1476_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07345">
        <property type="entry name" value="DUF1476"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF031780">
        <property type="entry name" value="UCP031780"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG68917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="103" mass="11692" checksum="6D7979DA57342E5C" modified="2017-03-15" version="1">MSGMKDRENAFENKFVHDAETQFKIESLRNRLLGQWAAQLMGKSGSEIEDYAREVIKADFAEPGDEDVFRKVHGDLNGRADQKTVRSKMAELLSEARDQITST</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LWZ8</accession>
    <name>A0A1M5LWZ8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Guanidinobutyrase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0524</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the arginase family. Agmatinase subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69568.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899052.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0524"/>
    <dbReference type="EnsemblBacteria" id="SHG69568">
        <property type="protein sequence ID" value="SHG69568"/>
        <property type="gene ID" value="SAMN05444003_0524"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016813">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901564">
        <property type="term" value="P:organonitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005925">
        <property type="entry name" value="Agmatinase-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006035">
        <property type="entry name" value="Ureohydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023696">
        <property type="entry name" value="Ureohydrolase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020855">
        <property type="entry name" value="Ureohydrolase_Mn_BS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11358">
        <property type="entry name" value="PTHR11358"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00491">
        <property type="entry name" value="Arginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036979">
        <property type="entry name" value="Arginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00116">
        <property type="entry name" value="ARGINASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52768">
        <property type="entry name" value="SSF52768"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01230">
        <property type="entry name" value="agmatinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01053">
        <property type="entry name" value="ARGINASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51409">
        <property type="entry name" value="ARGINASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003684"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG69568.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="313" mass="34251" checksum="B74E7809223EC53A" modified="2017-03-15" version="1">MPSMPISGNDLARFSGPQTFMRLPEATSARDIDVGFIGIPMDIGTSWRSGTRFGPKQLRQESAMIRPYNIQTGAAPFDALECSDLGDVAINTFSLSDTIRIIEDTYDAFLKDDFIPMTLGGDHSLTLPVLRSIAKKHGPVALVHVDAHADVNDEMFGERETHGTVFRRAYEERLITADKVFQIGLRGTGYTADDFNEAADWGFNQWIAPDIWHKSLTPLAEEIKSRIGDQKTYITYDIDSLDPSFAPGTGTPEIGGLTTPQAMELIRGLRGLNIVGCDLVEVSPPYDPSGNTALVGANLMFEMLSILPGVPVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LX13</accession>
    <name>A0A1M5LX13_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Ribosomal RNA small subunit methyltransferase A</fullName>
            <ecNumber evidence="6">2.1.1.182</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">16S rRNA dimethyladenosine transferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">16S rRNA dimethylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rsmA</name>
        <name evidence="6" type="synonym">ksgA</name>
        <name evidence="9" type="ORF">SAMN05444003_0529</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>adenosine(1518)/adenosine(1519) in 16S rRNA + 4 S-adenosyl-L-methionine = 4 H(+) + N(6)-dimethyladenosine(1518)/N(6)-dimethyladenosine(1519) in 16S rRNA + 4 S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:19609"/>
            <dbReference type="Rhea" id="RHEA-COMP:10232"/>
            <dbReference type="Rhea" id="RHEA-COMP:10233"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74411"/>
            <dbReference type="ChEBI" id="CHEBI:74493"/>
            <dbReference type="EC" id="2.1.1.182"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. RsmA subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.182" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69672.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899061.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0529"/>
    <dbReference type="EnsemblBacteria" id="SHG69672">
        <property type="protein sequence ID" value="SHG69672"/>
        <property type="gene ID" value="SAMN05444003_0529"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052908">
        <property type="term" value="F:16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00607">
        <property type="entry name" value="16SrRNA_methyltr_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001737">
        <property type="entry name" value="KsgA/Erm"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023165">
        <property type="entry name" value="rRNA_Ade_diMease-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020596">
        <property type="entry name" value="rRNA_Ade_Mease_Trfase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020598">
        <property type="entry name" value="rRNA_Ade_methylase_Trfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011530">
        <property type="entry name" value="rRNA_adenine_dimethylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11727">
        <property type="entry name" value="PTHR11727"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00398">
        <property type="entry name" value="RrnaAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00650">
        <property type="entry name" value="rADc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00755">
        <property type="entry name" value="ksgA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01131">
        <property type="entry name" value="RRNA_A_DIMETH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51689">
        <property type="entry name" value="SAM_RNA_A_N6_MT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 6 7" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="1 6" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="4 6 7" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 6 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="rADc" evidence="8">
        <location>
            <begin position="35"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="28"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="30"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="55"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="77"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="103"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="122"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00607"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00650"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG69672.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="279" mass="30179" checksum="CBE45C3E42EDC547" modified="2017-03-15" version="1">MAAIDNLPPLRDVIATHGIAARKSLGQNFLLDLNLTAKIARMAGDLSGSDILEVGPGPGGLTRGLLAEGARKVLAIEKDDRCMSALAEIEAAYPGRLQVINADALDINPTQYLNAPIKVAANLPYNVGTELLVRWLTPKNWPPFWDSLTLMFQREVAQRIVAQPGSKAYGRLAILSQWRSDPKIVLDLPPEAFTPAPKVSSAVVHIKALPQARSEAEAEILNKVVAAGFNQRRKMLRSALKGLAPDIEDRLLSAGIKPTERAEQVPLEGFCALARTFKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LZU6</accession>
    <name>A0A1M5LZU6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0541</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69943.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899082.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG69943">
        <property type="protein sequence ID" value="SHG69943"/>
        <property type="gene ID" value="SAMN05444003_0541"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025187">
        <property type="entry name" value="DUF4112"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35519">
        <property type="entry name" value="PTHR35519"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13430">
        <property type="entry name" value="DUF4112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG69943.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="133" mass="14936" checksum="EA5EF0661025E854" modified="2017-03-15" version="1">MNIEQDIDYELKKLRVIAWRMDALFYIPGTNISVGLDNFFGLIPIVGDTMAVAPSVYMIYKAKQLGATPGALAYMISNTVVDLLIDSIPIIGDVFDVVYNSNIRNYRALERKLNKQAAQAYEVTRQPKCLQMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M0I9</accession>
    <name>A0A1M5M0I9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0552</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70193.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899093.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG70193">
        <property type="protein sequence ID" value="SHG70193"/>
        <property type="gene ID" value="SAMN05444003_0552"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="53"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="92"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="123"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG70193.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="175" mass="19294" checksum="AAA7C0AB3569798A" modified="2017-03-15" version="1">MEDQVSYFQARIKRINDPKNTSYLDPETGMRIPKRISKQIIKTNNSARTEQKAGLGSVLLSVALGFLALIAARYIRFELVGISNDATDPATLAAMDAGLAAMIVFFIGGVLKHKSLRHMMAQVCGIAVMLVTMHNLVWFFPAEFAQAFSQDYVEQVTQTTAPLSIHFNGETIVSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M1J2</accession>
    <name>A0A1M5M1J2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF6456 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0599</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG71224.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899153.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0599"/>
    <dbReference type="EnsemblBacteria" id="SHG71224">
        <property type="protein sequence ID" value="SHG71224"/>
        <property type="gene ID" value="SAMN05444003_0599"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045599">
        <property type="entry name" value="DUF6456"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20057">
        <property type="entry name" value="DUF6456"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF6456" evidence="1">
        <location>
            <begin position="220"/>
            <end position="349"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF20057"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG71224.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="359" mass="39861" checksum="FD7EFF3C0AF2A3A4" modified="2017-03-15" version="1">MTCQVHRPELNLPAWLPTAAENYIQHTVMGQSIRSVARRTRSHPSTVLRQVRRLEAKRDDPLIDAAFDSFASRSLSYTSYLEKDATTMAMQIEAAPTSDVTVLPQQKIDKDGLFALRRLSERGAVLAVARDMETAVVVRDDDECGSLRTAVVETSVAQAMALRNWISCKDPDARIAKYFITAEGKRAVRELIAEEENRACNFSDNQMIGETANNTDGRSRYIVAENPVMSLSRRRDKTGIPFISREQLEAGERIRQDYELSGIDASTLQEQGDFDSSDTDSLHHGVAAARARLSTALKELGPGLADVAIECCCLQNGIEVTEKKMGWSARSGKVVLRIALTRLIQHYKRTEGKFAPMIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M1V6</accession>
    <name>A0A1M5M1V6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1 2">Hypoxanthine phosphoribosyltransferase</fullName>
            <ecNumber evidence="1 2">2.4.2.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0603</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>diphosphate + IMP = 5-phospho-alpha-D-ribose 1-diphosphate + hypoxanthine</text>
            <dbReference type="Rhea" id="RHEA:17973"/>
            <dbReference type="ChEBI" id="CHEBI:17368"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <dbReference type="EC" id="2.4.2.8"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2">Purine metabolism; IMP biosynthesis via salvage pathway; IMP from hypoxanthine: step 1/1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the purine/pyrimidine phosphoribosyltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.8" evidence="1 2"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG71334.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899156.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0603"/>
    <dbReference type="EnsemblBacteria" id="SHG71334">
        <property type="protein sequence ID" value="SHG71334"/>
        <property type="gene ID" value="SAMN05444003_0603"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00591">
        <property type="reaction ID" value="UER00648"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052657">
        <property type="term" value="F:guanine phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004422">
        <property type="term" value="F:hypoxanthine phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032264">
        <property type="term" value="P:IMP salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006166">
        <property type="term" value="P:purine ribonucleoside salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005904">
        <property type="entry name" value="Hxn_phspho_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00156">
        <property type="entry name" value="Pribosyltran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01203">
        <property type="entry name" value="HGPRTase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 4" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="2" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-0660">Purine salvage</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pribosyltran" evidence="3">
        <location>
            <begin position="15"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011895"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU364099"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG71334.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="180" mass="20335" checksum="5CDA4AD18C8509E0" modified="2017-03-15" version="1">MPQQPYVIDEMISAKSIAARVEALAKEIHDEFETTDKLVVVGLLRGSFVFIADLVRELDLPVEVDFLEASSYGDAMESSREVRIFKDLRGAIEGRDVLVVEDIIDTGHTLSHVTDYLITKAPARLKTIALLDKPARREVDFKADWTGFEIPDEFVVGYGIDYAQRNRNLPHIGKVRFLDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M4A0</accession>
    <name>A0A1M5M4A0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 9">Guanylate kinase</fullName>
            <ecNumber evidence="2 9">2.7.4.8</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8 9">GMP kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">gmk</name>
        <name evidence="11" type="ORF">SAMN05444003_0630</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Essential for recycling GMP and indirectly, cGMP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>ATP + GMP = ADP + GDP</text>
            <dbReference type="Rhea" id="RHEA:20780"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
            <dbReference type="ChEBI" id="CHEBI:58189"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.8"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 9">Belongs to the guanylate kinase family.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.8" evidence="2 9"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72056.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899193.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0630"/>
    <dbReference type="EnsemblBacteria" id="SHG72056">
        <property type="protein sequence ID" value="SHG72056"/>
        <property type="gene ID" value="SAMN05444003_0630"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004385">
        <property type="term" value="F:guanylate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00328">
        <property type="entry name" value="Guanylate_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008145">
        <property type="entry name" value="GK/Ca_channel_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008144">
        <property type="entry name" value="Guanylate_kin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017665">
        <property type="entry name" value="Guanylate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020590">
        <property type="entry name" value="Guanylate_kinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00625">
        <property type="entry name" value="Guanylate_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00072">
        <property type="entry name" value="GuKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03263">
        <property type="entry name" value="guanyl_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00856">
        <property type="entry name" value="GUANYLATE_KINASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50052">
        <property type="entry name" value="GUANYLATE_KINASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 9 11" id="KW-0418">Kinase</keyword>
    <keyword evidence="5 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Guanylate kinase-like" evidence="10">
        <location>
            <begin position="5"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="12"/>
            <end position="19"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005790"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012961"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00016296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00030128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00328"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG72056.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="212" mass="24309" checksum="E7D4030714782EC3" modified="2017-03-15" version="1">MNRRGLLIILSSPSGAGKSTLAGRLREWDPTLSFSVSATTRPPRAGEVDGQHYYFVSVDEFQRQIDAGEMLEHAQVFENYYGSPKAPVERAINEGRDVLFDIDWQGAQQIAKSSLRDHVLSIFILPPSISELHRRLVSRGQDAPDVIQRRMQKSWDEISHWDVYDYVLINDDLNETEERLKTIISAERLRAKQQPDLMGRVLKLKEEFEGLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M5C8</accession>
    <name>A0A1M5M5C8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 8">3-dehydroquinate dehydratase</fullName>
            <shortName evidence="8">3-dehydroquinase</shortName>
            <ecNumber evidence="6 8">4.2.1.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Type II DHQase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">aroQ</name>
        <name evidence="12" type="ORF">SAMN05444003_0648</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 8">Catalyzes a trans-dehydration via an enolate intermediate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>3-dehydroquinate = 3-dehydroshikimate + H2O</text>
            <dbReference type="Rhea" id="RHEA:21096"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16630"/>
            <dbReference type="ChEBI" id="CHEBI:32364"/>
            <dbReference type="EC" id="4.2.1.10"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 8">Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 3/7.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5 8">Homododecamer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 8">Belongs to the type-II 3-dehydroquinase family.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.10" evidence="6 8"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72502.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899228.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0648"/>
    <dbReference type="EnsemblBacteria" id="SHG72502">
        <property type="protein sequence ID" value="SHG72502"/>
        <property type="gene ID" value="SAMN05444003_0648"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00053">
        <property type="reaction ID" value="UER00086"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003855">
        <property type="term" value="F:3-dehydroquinate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009073">
        <property type="term" value="P:aromatic amino acid family biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008652">
        <property type="term" value="P:cellular amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009423">
        <property type="term" value="P:chorismate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00466">
        <property type="entry name" value="DHQase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.9100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00169">
        <property type="entry name" value="AroQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001874">
        <property type="entry name" value="DHquinase_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018509">
        <property type="entry name" value="DHquinase_II_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036441">
        <property type="entry name" value="DHquinase_II_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21272">
        <property type="entry name" value="PTHR21272"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01220">
        <property type="entry name" value="DHquinase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001399">
        <property type="entry name" value="DHquinase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52304">
        <property type="entry name" value="SSF52304"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01088">
        <property type="entry name" value="aroQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01029">
        <property type="entry name" value="DEHYDROQUINASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="8" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="7 8" id="KW-0456">Lyase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="8 10">
        <location>
            <begin position="102"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="8 9">
        <location>
            <position position="24"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="8 9">
        <location>
            <position position="101"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="75"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="81"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="88"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="112"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="8 11">
        <location>
            <position position="19"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001864"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003924"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012060"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR001399-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR001399-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR001399-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG72502.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="148" mass="15768" checksum="152F6157AFA6CCCB" modified="2017-03-15" version="1">MTRSLLILNGPNLNMLGTRQPEVYGGTTLAQIEDACAKFASSFGISVSFEQSNHEGTLVDIIQASKGVHDGIVFNAGAYTHTSLALHDAIASVEIPTIELHLSNVHAREPFRHHSYLAPVSIGLICGFGANGYTLAMTAMHQHLEGGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MDV3</accession>
    <name>A0A1M5MDV3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Glycine amidinotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0754</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the amidinotransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74883.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899413.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0754"/>
    <dbReference type="EnsemblBacteria" id="SHG74883">
        <property type="protein sequence ID" value="SHG74883"/>
        <property type="gene ID" value="SAMN05444003_0754"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015067">
        <property type="term" value="F:amidinotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033195">
        <property type="entry name" value="AmidinoTrfase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10488">
        <property type="entry name" value="PTHR10488"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <feature type="active site" evidence="3">
        <location>
            <position position="196"/>
        </location>
    </feature>
    <feature type="active site" evidence="3">
        <location>
            <position position="245"/>
        </location>
    </feature>
    <feature type="active site" description="Amidino-cysteine intermediate" evidence="3">
        <location>
            <position position="351"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR633195-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG74883.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="369" mass="42739" checksum="9DFBFAA1A3BCA89C" modified="2017-03-15" version="1">MQKTVVNSWNEWDPLKHVIVGRADDCHIPPEEPALDAKVPEDSDMRGQWGRRPQETIDRANELLDKFAAQLEARGVRVDRPNSIDHSRPVTTPDFHTDSQFGCMPPRDVLLTVGSEILEATMSYRCRWFEYLNYRPLMKQYWEEDPNFRHEAAPKPRLTDADYHPDYLSEKIGVEKRLQWAEEKFFVTTEEEPLFDAADVLRFGKDLVVQHGFTTNLKGIEWLRRHFPDHRVHTVNFPGDPYPIHIDATFTPLHPGLILNNPQRRLPKDQRALFERNGWEIVDAAQPAHNTPPPLCYSSVWLSMNVLVLDPKTVCVEKSEVYQAEQMDKLGMEVVEVDLRDAYAFGGGLHCCTADVYREGDCEDYFQHQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MHT5</accession>
    <name>A0A1M5MHT5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0835</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899529.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0835"/>
    <dbReference type="EnsemblBacteria" id="SHG76771">
        <property type="protein sequence ID" value="SHG76771"/>
        <property type="gene ID" value="SAMN05444003_0835"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG76771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="199" mass="23290" checksum="2F3C72EA7CCF1821" modified="2017-03-15" version="1">MLVFFEKKLVIFATTKTGSTALHGALSPRASMTFRNPPAVKHASVQKYERILKPTFEELGAPQDMETFALIRHPVEWLSSWFRYRCRDQLIGKPNSTRDVTFNEFVVEYMKDLPRSFADIGSQSKFLTGLDDELGIDHLYQYEAEKRYLQFLRDRLDVPIDTKRRNVSPDFEVTIDPGIRRDLEALHRVEFDLWHIAQH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MHX7</accession>
    <name>A0A1M5MHX7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Tungstate transport system ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0840</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899537.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0840"/>
    <dbReference type="EnsemblBacteria" id="SHG76895">
        <property type="protein sequence ID" value="SHG76895"/>
        <property type="gene ID" value="SAMN05444003_0840"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="21"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="53"/>
            <end position="60"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG76895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="247" mass="26473" checksum="1CE82AD74936DFC0" modified="2017-03-15" version="1">MSESAEVVPIRPSIRLDTDALTLTDIRLSHEGRNLLDGVIAEISSNGITTLIGPNGAGKSLLLRVIMDLVKPTSGVVEFGDGFEHPALVFQRPILLRRSVRANLNHALKLAKVPKADRSGRLAELLVAADLTRLAENPARALSGGEQQRLSIVRALASNPSLLLLDEPTASLDPSATKAIEDLIRNTSAAGVKIILVTHNRAQAKRLADDVLFLHQGKIAEHTLAEKFFQAPQSDAAKGYLAGDLLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5ML35</accession>
    <name>A0A1M5ML35_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Protein adenylyltransferase SelO</fullName>
            <ecNumber evidence="9">2.7.7.n1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">selO</name>
        <name evidence="10" type="ORF">SAMN05444003_0884</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>ATP + L-seryl-[protein] = 3-O-(5'-adenylyl)-L-seryl-[protein] + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:58120"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:15073"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:142516"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>ATP + L-threonyl-[protein] = 3-O-(5'-adenylyl)-L-threonyl-[protein] + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:54292"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:13847"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:138113"/>
            <dbReference type="EC" id="2.7.7.n1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>ATP + L-tyrosyl-[protein] = diphosphate + O-(5'-adenylyl)-L-tyrosyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:54288"/>
            <dbReference type="Rhea" id="RHEA-COMP:10136"/>
            <dbReference type="Rhea" id="RHEA-COMP:13846"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:46858"/>
            <dbReference type="ChEBI" id="CHEBI:83624"/>
            <dbReference type="EC" id="2.7.7.n1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 9">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the SELO family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.n1" evidence="9"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899596.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0884"/>
    <dbReference type="EnsemblBacteria" id="SHG77917">
        <property type="protein sequence ID" value="SHG77917"/>
        <property type="gene ID" value="SAMN05444003_0884"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00692">
        <property type="entry name" value="SelO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003846">
        <property type="entry name" value="SelO"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32057">
        <property type="entry name" value="PTHR32057"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02696">
        <property type="entry name" value="SelO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8 9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 9" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 9" id="KW-0808">Transferase</keyword>
    <feature type="active site" description="Proton acceptor" evidence="9">
        <location>
            <position position="242"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="84"/>
            <end position="87"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="107"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="119"/>
            <end position="120"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="170"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="177"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="243"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="252"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG77917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="465" mass="50678" checksum="21238980A5770E08" modified="2017-03-15" version="1">MTVQIPFDNSFARLPNHMFTAQRPTPVQQPALIAKNDALASELGISFGDDAAEVFAGNTIPEGAAPLAQLYAGHQFGNWNPQLGDGRAILLGEVVGTDGIRRDIQLKGSGITPYSRNGDGRSWLGPVLREYIVSEAMHAMGVPTTRALAAVTTGETVYRETALPGAVFTRVAQSHIRVGTFQVYAARRDTEASQALLDHVIARHYPEATGPQDVLDAVIARHARLVAKWLSLGFIHGVMNTDNVTISGETIDYGPCAFMDDYEPMKVFSSIDQMGRYAYGNQPRVAVWNMAQLATALVPLMPDQDEAVEIFTESVNRFPDLYEAAWLEFFGAKLGLDLPTKDDTQLINDLLDLMSAGGSDFTNTFANLSSINAPDHFADREAFGAWVDRWQERRTPKHAEIMAAANPQVIPRNHQVEAVIQAGVEGDFAPFHDMLAAVTDPYTANAKFAKVPVAAEVVTRTFCGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MPR7</accession>
    <name>A0A1M5MPR7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Nitrile hydratase beta subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0934</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79062.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0934"/>
    <dbReference type="EnsemblBacteria" id="SHG79062">
        <property type="protein sequence ID" value="SHG79062"/>
        <property type="gene ID" value="SAMN05444003_0934"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018822">
        <property type="term" value="F:nitrile hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.472.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042262">
        <property type="entry name" value="CN_hydtase_beta_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024690">
        <property type="entry name" value="CN_hydtase_beta_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008990">
        <property type="entry name" value="Elect_transpt_acc-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02211">
        <property type="entry name" value="NHase_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50090">
        <property type="entry name" value="SSF50090"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NHase_beta" evidence="2">
        <location>
            <begin position="8"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG79062.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="111" mass="12601" checksum="E1AAA4E6A3D7E520" modified="2017-03-15" version="1">MTASGRRWHDMGGDASDPVLPDEHDFALWEKRVDALLVLCNVKGLFTVDGLRRVLEDMGPEAFETMSYYERWITSVNQNLIENGVYTIEELGQRMEEVKMRGNTYGDAANG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MQB0</accession>
    <name>A0A1M5MQB0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized conserved protein, contains Mth938-like domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0945</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79262.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899687.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0945"/>
    <dbReference type="EnsemblBacteria" id="SHG79262">
        <property type="protein sequence ID" value="SHG79262"/>
        <property type="gene ID" value="SAMN05444003_0945"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036748">
        <property type="entry name" value="MTH938-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007523">
        <property type="entry name" value="NDUFAF3/AAMDC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21192">
        <property type="entry name" value="PTHR21192"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04430">
        <property type="entry name" value="DUF498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64076">
        <property type="entry name" value="SSF64076"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG79262.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="117" mass="12471" checksum="71EC8AC38BBB1650" modified="2017-03-15" version="1">MRLNEVEYNDSQPIDGYGPGFFRIGGKVFEGATAVLPSGVTSWGGYEDTQTLLDAMADVDVIFVGTGKEIAHMPADFRSVFDDAGIGVEAMPSPAACRTYNVLLSEGRRVALALLPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MQD0</accession>
    <name>A0A1M5MQD0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Nitrile hydratase</fullName>
            <ecNumber evidence="3">4.2.1.84</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_0936</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>an aliphatic amide = a nitrile + H2O</text>
            <dbReference type="Rhea" id="RHEA:12673"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:18379"/>
            <dbReference type="ChEBI" id="CHEBI:65285"/>
            <dbReference type="EC" id="4.2.1.84"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the nitrile hydratase subunit alpha family.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.84" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899669.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0936"/>
    <dbReference type="EnsemblBacteria" id="SHG79099">
        <property type="protein sequence ID" value="SHG79099"/>
        <property type="gene ID" value="SAMN05444003_0936"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0080109">
        <property type="term" value="F:indole-3-acetonitrile nitrile hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046914">
        <property type="term" value="F:transition metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.330.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036648">
        <property type="entry name" value="CN_Hdrase_a/SCN_Hdrase_g_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004232">
        <property type="entry name" value="CN_Hdrtase_a/SCN_Hdrlase_g"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023900">
        <property type="entry name" value="CN_Hdrtase_asu/SCN_Hdrlase_gsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018141">
        <property type="entry name" value="Nitrile_hydratase_asu"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02979">
        <property type="entry name" value="NHase_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001426">
        <property type="entry name" value="NHase_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56209">
        <property type="entry name" value="SSF56209"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01323">
        <property type="entry name" value="nitrile_alph"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0456">Lyase</keyword>
    <keyword evidence="4 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NHase_alpha" evidence="7">
        <location>
            <begin position="28"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="116"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="119"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="120"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="121"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001410"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013079"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR001426-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG79099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="211" mass="23755" checksum="407F7B98DF9C4276" modified="2017-03-15" version="1">MPHDHHDHLSPSGHPYRKDDDVELTYWQTMEIAVRELLIEKGELTAAQITSQIDAMDARSPANGAQVVARYWTDPDFAEALLADGSQATRDMGYDIGPMKLIALPNTPTLHNVVVCTLCSCYPRNLLGLPPDWYKSRAYRSRTVREPRRVLSEFGVELSPDIEVRVHDSTADMRYIVIPNRPDGTEGWMQDQLAELVTRDSMIGTGLPKHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MV47</accession>
    <name>A0A1M5MV47_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1039</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81151.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG81151">
        <property type="protein sequence ID" value="SHG81151"/>
        <property type="gene ID" value="SAMN05444003_1039"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG81151.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="237" mass="25610" checksum="2D3F3F757E94F875" modified="2017-03-15" version="1">MLGFDTKHISASDQDASPALAQMKAAVENAKENNPFVVYEATGHDLVYAIFDIAKNDEGVHLEKALGIVGALAGYSCAMSAGLTAEQQDAPKDPAAHAKRIDHLVFGSNSSLYRVWQSKAVFLGETKTLDFQELVSRHNAQIGTPEFGTAKLPQGRFVEEKPITLLLDHWKDMIGILNRYDEHYAGWPISWAAAGAQLMEMGQSAIPAGEALQILLEYAVPMSRVGAADTNSKPEAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MV75</accession>
    <name>A0A1M5MV75_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 12">GTP 3',8-cyclase</fullName>
            <ecNumber evidence="3 12">4.1.99.22</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="12">Molybdenum cofactor biosynthesis protein A</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="primary">moaA</name>
        <name evidence="14" type="ORF">SAMN05444003_1034</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 12">
            <text>AH2 + GTP + S-adenosyl-L-methionine = (8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate + 5'-deoxyadenosine + A + H(+) + L-methionine</text>
            <dbReference type="Rhea" id="RHEA:49576"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:131766"/>
            <dbReference type="EC" id="4.1.99.22"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="12">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="12">Binds 2 [4Fe-4S] clusters. Binds 1 [4Fe-4S] cluster coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine and 1 [4Fe-4S] cluster coordinated with 3 cysteines and the GTP-derived substrate.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 12">Cofactor biosynthesis; molybdopterin biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="12">Monomer and homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="12">Belongs to the radical SAM superfamily. MoaA family.</text>
    </comment>
    <dbReference type="EC" id="4.1.99.22" evidence="3 12"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81032.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899774.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1034"/>
    <dbReference type="EnsemblBacteria" id="SHG81032">
        <property type="protein sequence ID" value="SHG81032"/>
        <property type="gene ID" value="SAMN05444003_1034"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00344"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019008">
        <property type="term" value="C:molybdopterin synthase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061798">
        <property type="term" value="F:GTP 3',8'-cyclase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1904047">
        <property type="term" value="F:S-adenosyl-L-methionine binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01225_B">
        <property type="entry name" value="MoaA_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013483">
        <property type="entry name" value="MoaA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000385">
        <property type="entry name" value="MoaA_NifB_PqqE_Fe-S-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010505">
        <property type="entry name" value="Mob_synth_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06463">
        <property type="entry name" value="Mob_synth_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02666">
        <property type="entry name" value="moaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01305">
        <property type="entry name" value="MOAA_NIFB_PQQE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="9 12" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="7 12" id="KW-0408">Iron</keyword>
    <keyword evidence="8 12" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="11 12" id="KW-0456">Lyase</keyword>
    <keyword evidence="5 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10 12" id="KW-0501">Molybdenum cofactor biosynthesis</keyword>
    <keyword evidence="6 12" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 12" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="13">
        <location>
            <begin position="8"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="17"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="24"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="28"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="30"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="31"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="66"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="70"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="100"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="124"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="160"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="194"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="258"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-substrate</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="261"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-substrate</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <begin position="263"/>
            <end position="265"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="275"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-substrate</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005046"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="SHG81032.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="334" mass="37675" checksum="1DA27462871519DD" modified="2017-03-15" version="1">MSAPLIDPFARAIEYLRVSVTDRCDFRCVYCMSENMTFLPKKELLTLEELDRLCSAFIRLGVKKLRITGGEPLVRREIMTFFNSMSRHLDSGALDELTITTNGSQLARFADDLYAAGVRRINVSLDTLDEQKFADVTRWGRLPQVLKGIDAAQKAGLRVKINTVALKGFNEDELFTLTDWCAERDMDLTFIEVMPMGDIGNEDRIGQYWSLKDVRAQLAERSELTDLAERTGGPARYIRMEETGQKIGFITPLSHNFCESCNRVRVTCTGEIYTCLGQEGHSDLRAPLRSSESDMVLEDAIRAAIALKPKGHDFDYSRQRVDGQVSRHMSHTGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MVU6</accession>
    <name>A0A1M5MVU6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Fructokinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1054</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81454.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899791.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1054"/>
    <dbReference type="EnsemblBacteria" id="SHG81454">
        <property type="protein sequence ID" value="SHG81454"/>
        <property type="gene ID" value="SAMN05444003_1054"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006083">
        <property type="entry name" value="PRK/URK"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00485">
        <property type="entry name" value="PRK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PRK" evidence="1">
        <location>
            <begin position="27"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG81454.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="210" mass="22934" checksum="A526954D8DC756C5" modified="2017-03-15" version="1">MKDITNHVNLLADRIYALRPNNPRLLVALSGAPGSGKSTLASELSRRLTLQKCVNVVVPMDGFHLDNSLLEAHGLLARKGAPETFDVAGFIRMINALRRGDNVVAPTFDRARDIAIAGAIHVPPECPVVILEGNYLLFDEAPWSALQQAWDISAFLDVPMPEIRARLIQRWLSLNLSRAAATRRAESNDIPNAQRVIGAPLTADFTLTGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MYU0</accession>
    <name>A0A1M5MYU0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Acetolactate synthase-1/2/3 large subunit/5-guanidino-2-oxopentanoate decarboxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_1100</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the TPP enzyme family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82468.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899830.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1100"/>
    <dbReference type="EnsemblBacteria" id="SHG82468">
        <property type="protein sequence ID" value="SHG82468"/>
        <property type="gene ID" value="SAMN05444003_1100"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044281">
        <property type="term" value="P:small molecule metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012000">
        <property type="entry name" value="Thiamin_PyroP_enz_cen_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012001">
        <property type="entry name" value="Thiamin_PyroP_enz_TPP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045229">
        <property type="entry name" value="TPP_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011766">
        <property type="entry name" value="TPP_enzyme-bd_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18968">
        <property type="entry name" value="PTHR18968"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02775">
        <property type="entry name" value="TPP_enzyme_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00205">
        <property type="entry name" value="TPP_enzyme_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02776">
        <property type="entry name" value="TPP_enzyme_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="SSF52467"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0786">Thiamine pyrophosphate</keyword>
    <feature type="domain" description="TPP_enzyme_N" evidence="5">
        <location>
            <begin position="7"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="domain" description="TPP_enzyme_M" evidence="3">
        <location>
            <begin position="191"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="domain" description="TPP_enzyme_C" evidence="4">
        <location>
            <begin position="381"/>
            <end position="525"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007812"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362132"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG82468.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="531" mass="57213" checksum="8843DC3E0ADC0235" modified="2017-03-15" version="1">MSTKPLGAQISHMLKDRGVEVIFGIPGVHNQEMYRGIEEAGLTHVLARHEQGAGFMADGYARATGMPGLCYVITGPGLCNIMTPMGQAYSDSVPMLVLSSCLAETEARKGQLHQMRDQEAAGASVCDWSVTARTADAAYHLIDRALTEFEVKRPRPKHITVPIPLLEGNAPSAPTIGEIADLPMASEHDVAMVADALAEAKRPLLIVGGGCTEAEFGARQLAEKCGCAVFCTYAGRGVVSEENPLHYGSFLARPSSVVEIAKADLVLAVGTELSEVDLWRDELGHQASLIRVDIDTESLTSARNTEKMVLSDAGCFFDAVLARFEQDGVELTSTDWTEDEVQAAKRKWRGEITVERPGITELADAMRAVLPEDTMIFSDMTQFAYGAKEIYPMDRSAHWHHPYGFGTLGYALPAAIGGKIGVGDQPVVAIAGDYGFQYTHQELMVAVELELSLPIILWDNGKLGEIEDSMVRAQIAPNAVIQKNPDFVKLAEAYGAASTAPKSLEEFQTELAKALSAQGPTLIHVTPETVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N2F0</accession>
    <name>A0A1M5N2F0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1135</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83349.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG83349">
        <property type="protein sequence ID" value="SHG83349"/>
        <property type="gene ID" value="SAMN05444003_1135"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG83349.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="46" mass="5072" checksum="6C588576533360C8" modified="2017-03-15" version="1">MSFLADITFMEVALSLVTVGIIERLAVQYLPEDMVGPNGWLLTTSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N4X7</accession>
    <name>A0A1M5N4X7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1191</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84624.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG84624">
        <property type="protein sequence ID" value="SHG84624"/>
        <property type="gene ID" value="SAMN05444003_1191"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG84624.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="39" mass="4648" checksum="07B7453F529022C4" modified="2017-03-15" version="1">MNLTNLFQKKLWLQFHLTQVKLSNFAGNTILIGQRNIFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N6C2</accession>
    <name>A0A1M5N6C2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Na(+)/H(+) antiporter NhaA</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Sodium/proton antiporter NhaA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">nhaA</name>
        <name evidence="8" type="ORF">SAMN05444003_1213</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>2 H(+)(out) + Na(+)(in) = 2 H(+)(in) + Na(+)(out)</text>
            <dbReference type="Rhea" id="RHEA:29251"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29101"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899926.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG85114">
        <property type="protein sequence ID" value="SHG85114"/>
        <property type="gene ID" value="SAMN05444003_1213"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015081">
        <property type="term" value="F:sodium ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006885">
        <property type="term" value="P:regulation of pH"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1530.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01844">
        <property type="entry name" value="NhaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023171">
        <property type="entry name" value="Na/H_antiporter_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004670">
        <property type="entry name" value="NhaA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30341">
        <property type="entry name" value="PTHR30341"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06965">
        <property type="entry name" value="Na_H_antiport_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00773">
        <property type="entry name" value="NhaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0050">Antiport</keyword>
    <keyword evidence="3 7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0406">Ion transport</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0915">Sodium</keyword>
    <keyword evidence="7" id="KW-0739">Sodium transport</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="19"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="61"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="100"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="127"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="157"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="184"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="214"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="261"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="295"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="329"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="363"/>
            <end position="382"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01844"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG85114.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="397" mass="42141" checksum="20549474DE95DA3D" modified="2017-03-15" version="1">MALPAVFERIFKHEAFGGVLLMACAVAAMIVANSALAPVYNEILGGYLAVTYDGRGLEKPLILWINDGLMAIFFFLIGLELKAELMEGKLKNPRDVVLPGMAAVGGMAVPAIVFIWFNWGLPSLSGWAIPAATDIAFALGLLALVGSRAPTSLKVFLLTLAILDDMGAIIIIALFYTAELQVEYLIWALLPLSLMIALNLRGSHRQGATLMLGVVLWFLVLRSGVHATLAGVVTAFCIPLVDRWGKSPLHSLEHAVSPWSTYFIVPVFAFANAGVVLTGMSFADLLDPLPLGIALGLLVGKQVGVFGMTFALVKLGVAKLPHGANWLHIYGISCLAGVGFTMSLFIGSLSFEDAAMMNQVRMGVLTGSIISGILGYAALMMASSPAQNEEPVAQPAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N6D0</accession>
    <name>A0A1M5N6D0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1195</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84709.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900439.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1195"/>
    <dbReference type="EnsemblBacteria" id="SHG84709">
        <property type="protein sequence ID" value="SHG84709"/>
        <property type="gene ID" value="SAMN05444003_1195"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041698">
        <property type="entry name" value="Methyltransf_25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13649">
        <property type="entry name" value="Methyltransf_25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransf_25" evidence="1">
        <location>
            <begin position="65"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG84709.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="284" mass="31638" checksum="A6E43627E98DD9B4" modified="2017-03-15" version="1">MSKKIDTRAVGLDIGLAAIKFLTGKENLHYGIWDGLDICAAHVGPAQEAYTDKLFELLPKGPLRILDIGGGAGETAKKLIALGHQVDIVIPSAYLADRCRANALEATVYELKFEEFETDKTYDLCLFSESFQYIPMEVSFPKVATLLKPNGHLIIADCFRTEAYYQPNRTSRVGGGHALTAYRAALETCAFDVLSEEDITTSVAPSVQVEQDLFHVIGLGVDRFDDELQSKRPVARKMIHGVLGMILSKRRRAKLYDRLTGNTRTAEQFEKYNIYLMSALRLKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N962</accession>
    <name>A0A1M5N962_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 10">Glutamyl-tRNA(Gln) amidotransferase subunit A</fullName>
            <shortName evidence="10">Glu-ADT subunit A</shortName>
            <ecNumber evidence="4 10">6.3.5.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">gatA</name>
        <name evidence="12" type="ORF">SAMN05444003_1253</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>ATP + H2O + L-glutamine + L-glutamyl-tRNA(Gln) = ADP + H(+) + L-glutamate + L-glutaminyl-tRNA(Gln) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:17521"/>
            <dbReference type="Rhea" id="RHEA-COMP:9681"/>
            <dbReference type="Rhea" id="RHEA-COMP:9684"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:78520"/>
            <dbReference type="ChEBI" id="CHEBI:78521"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.5.7"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="3 10">Heterotrimer of A, B and C subunits.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 10">Belongs to the amidase family. GatA subfamily.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.7" evidence="4 10"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86025.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899958.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1253"/>
    <dbReference type="EnsemblBacteria" id="SHG86025">
        <property type="protein sequence ID" value="SHG86025"/>
        <property type="gene ID" value="SAMN05444003_1253"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030956">
        <property type="term" value="C:glutamyl-tRNA(Gln) amidotransferase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050567">
        <property type="term" value="F:glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1300.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00120">
        <property type="entry name" value="GatA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000120">
        <property type="entry name" value="Amidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020556">
        <property type="entry name" value="Amidase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023631">
        <property type="entry name" value="Amidase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036928">
        <property type="entry name" value="AS_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004412">
        <property type="entry name" value="GatA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11895">
        <property type="entry name" value="PTHR11895"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01425">
        <property type="entry name" value="Amidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75304">
        <property type="entry name" value="SSF75304"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00132">
        <property type="entry name" value="gatA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00571">
        <property type="entry name" value="AMIDASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 10" id="KW-0436">Ligase</keyword>
    <keyword evidence="7 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9 10" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Amidase" evidence="11">
        <location>
            <begin position="25"/>
            <end position="471"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="10">
        <location>
            <position position="78"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="10">
        <location>
            <position position="156"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-ester intermediate" evidence="10">
        <location>
            <position position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001243"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012739"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00014428"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00120"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF01425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG86025.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="491" mass="51961" checksum="5B0009B142B1E05A" modified="2017-03-15" version="1">MSDLTKLTLAQTRDAMRKGDTSSAEVTGAYSKEVEASGALNAYVEGTLNIAADQAKAADQRIAEGDAPDMCGIPLGIKDLFCTKGVKSQAASGILDGFKPEYESTVTSKLFDAGAVMLGKLNMDEFAMGSSNETSVYGNVVNPWKVDDRDLTPGGSSGGSAAAVAADLCVAATGTDTGGSIRQPAAFTGITGIKPTYGRVSRWGIVAFASSLDQAGPMTKDVRDAAIMLEAMCGHDPKDSTSADLPVPNFEAALTGDIKGKTIGIPKEYRMDGMSAEIEKLWSDGTEMLKDAGAEIKDISLPHTKYALPAYYVIAPAEASSNLARYDGVRFGHRAKLDAGDGITEMYEKTRAEGFGAEVQRRVMVGTYVLSAGFYDAYYNRARKVRALIKQDFEKVFADGVDAILTPATPSAAFGLGENMDPIQMYLNDVFTVTVNLAGLPGIAIPAGLDASGLPLGLQLIGRPWEEGDLLNVAYSLERAAGFVAKPDKWW</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NC02</accession>
    <name>A0A1M5NC02_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">DNA topoisomerase 1</fullName>
            <ecNumber evidence="10">5.6.2.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">DNA topoisomerase I</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">topA</name>
        <name evidence="13" type="ORF">SAMN05444003_1313</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>ATP-independent breakage of single-stranded DNA, followed by passage and rejoining.</text>
            <dbReference type="EC" id="5.6.2.1"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="10">Monomer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 10">Belongs to the type IA topoisomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.1" evidence="10"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87005.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900012.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1313"/>
    <dbReference type="EnsemblBacteria" id="SHG87005">
        <property type="protein sequence ID" value="SHG87005"/>
        <property type="gene ID" value="SAMN05444003_1313"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003917">
        <property type="term" value="F:DNA topoisomerase type I (single strand cut, ATP-independent) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006265">
        <property type="term" value="P:DNA topological change"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00186">
        <property type="entry name" value="TOP1Ac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03363">
        <property type="entry name" value="TOPRIM_TopoIA_TopoI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00952">
        <property type="entry name" value="Topoisom_1_prok"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000380">
        <property type="entry name" value="Topo_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003601">
        <property type="entry name" value="Topo_IA_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023406">
        <property type="entry name" value="Topo_IA_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013497">
        <property type="entry name" value="Topo_IA_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013824">
        <property type="entry name" value="Topo_IA_cen_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013825">
        <property type="entry name" value="Topo_IA_cen_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013826">
        <property type="entry name" value="Topo_IA_cen_sub3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023405">
        <property type="entry name" value="Topo_IA_core_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003602">
        <property type="entry name" value="Topo_IA_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013498">
        <property type="entry name" value="Topo_IA_Znf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005733">
        <property type="entry name" value="TopoI_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028612">
        <property type="entry name" value="Topoisom_1_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025589">
        <property type="entry name" value="Toprim_C_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006171">
        <property type="entry name" value="TOPRIM_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034149">
        <property type="entry name" value="TOPRIM_TopoI"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42785">
        <property type="entry name" value="PTHR42785"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01131">
        <property type="entry name" value="Topoisom_bac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01751">
        <property type="entry name" value="Toprim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13368">
        <property type="entry name" value="Toprim_C_rpt"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01396">
        <property type="entry name" value="zf-C4_Topoisom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00417">
        <property type="entry name" value="PRTPISMRASEI"/>
    </dbReference>
    <dbReference type="SMART" id="SM00437">
        <property type="entry name" value="TOP1Ac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00436">
        <property type="entry name" value="TOP1Bc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00493">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56712">
        <property type="entry name" value="SSF56712"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01051">
        <property type="entry name" value="topA_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00396">
        <property type="entry name" value="TOPOISOMERASE_I_PROK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50880">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 10" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="9 10 13" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 10" id="KW-0799">Topoisomerase</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <keyword evidence="4" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="Toprim" evidence="12">
        <location>
            <begin position="1"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="region of interest" description="Interaction with DNA" evidence="10">
        <location>
            <begin position="166"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="439"/>
            <end position="460"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="667"/>
            <end position="691"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="836"/>
            <end position="859"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="11">
        <location>
            <begin position="671"/>
            <end position="691"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="11">
        <location>
            <begin position="843"/>
            <end position="859"/>
        </location>
    </feature>
    <feature type="active site" description="O-(5'-phospho-DNA)-tyrosine intermediate" evidence="10">
        <location>
            <position position="296"/>
        </location>
    </feature>
    <feature type="site" description="Interaction with DNA" evidence="10">
        <location>
            <position position="31"/>
        </location>
    </feature>
    <feature type="site" description="Interaction with DNA" evidence="10">
        <location>
            <position position="142"/>
        </location>
    </feature>
    <feature type="site" description="Interaction with DNA" evidence="10">
        <location>
            <position position="143"/>
        </location>
    </feature>
    <feature type="site" description="Interaction with DNA" evidence="10">
        <location>
            <position position="146"/>
        </location>
    </feature>
    <feature type="site" description="Interaction with DNA" evidence="10">
        <location>
            <position position="158"/>
        </location>
    </feature>
    <feature type="site" description="Interaction with DNA" evidence="10">
        <location>
            <position position="298"/>
        </location>
    </feature>
    <feature type="site" description="Interaction with DNA" evidence="10">
        <location>
            <position position="491"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00952"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHG87005.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="859" mass="95091" checksum="AC8D6C0E2C9F689A" modified="2017-03-15" version="1">MPVVVVESPAKAKKINGYLGNDYTVLASFGHVRDLPPKDGSVLPDEDFEMKWEVASDSKKHIKAIVNALKDDPELILATDPDREGEAISWHLTEALTARKAIKKDTPVSRVVFNAITKSAVMEAMENPREVDQPLVEAYLARRALDYLVGFNLSPVLWRKLPGSRSAGRVQSVTLRLLVEREMEIEAFRAQEYWSVKAQLKSARGQSYEARLTVLASDKLEKFSIANQTQAEMAVQAIQSRDLVVKSVEAKPATRNPSPPFMTSTLQQEASRKFGFGARQTMSVAQRLYEAGLITYMRTDGIDMAPEAVTDARGAIQSKFGDTYLPASPRMYKNKAKNAQEAHECIRPTEMGVSTEDAKIADADQRKLYDLIYKRTMASQMAAARLERTTADIGSADGQVMLRANGQVMLFDGFLAIYEEGKDDAVVDDDDKRLPQLAEGEAASKDSVTPEQHFTQPPPRYTEATLVKRMEELGIGRPSTYASIVTTIQDRGYVEKEKNRLIPQDKGRLVTAFLSNYFRKYVGYDFTAQLENQLDEVSAGDANYKVVLGNFWRDFSAAIAETSELRITDVLEKINEVLEPHLFPRNEDVTDPRLCPNCGNGRLSMRTARSGGAFIGCSNYPECRYTRPFGPPNPEAEASAIPPEGKLLGEDAGDQIWVHKGRFGPYVQRGEVSDDNKKPPRQSIPKEWPPEEVELETAVKLLALPREIGPHPADGIMVWSNIGRYGPYLKHAPSTSDRGGTNANLESLEEVWTVGMNRAVQLLAEKVASRGGRGRAAKPIKELGEHPDAGGAVGVYDGKYGPYVKWEKINATIPDTITPDDITLDQAVALIAERAEKTGKKVAKKKPAAKKKMTAKKKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NDE5</accession>
    <name>A0A1M5NDE5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1348</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87584.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900041.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1348"/>
    <dbReference type="EnsemblBacteria" id="SHG87584">
        <property type="protein sequence ID" value="SHG87584"/>
        <property type="gene ID" value="SAMN05444003_1348"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG87584.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="209" mass="23382" checksum="1E0FDB96EB3AF215" modified="2017-03-15" version="1">MSLSQEDIEKYFTRKDGTYLCARWGRPIAPVIFGVDEASLEVFKAALEAVVVLADHKMAETDPELGSNLMIFFCKDWDELAAVPHLDKLVPDLQILVKRLIKSDANQYRIFRFEEDGAIKAAFVFLRLDEHMANATADTIALSQATQTILLWSDTAFMDASPLGIVEDKAVLKPEIADIIRTAYDPTLPAVAQDKSHALRMAARLMVRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NEE3</accession>
    <name>A0A1M5NEE3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Methylated-DNA--protein-cysteine methyltransferase</fullName>
            <ecNumber evidence="7">2.1.1.63</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">6-O-methylguanine-DNA methyltransferase</fullName>
            <shortName evidence="7">MGMT</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">O-6-methylguanine-DNA-alkyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_1368</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>a 4-O-methyl-thymidine in DNA + L-cysteinyl-[protein] = a thymidine in DNA + S-methyl-L-cysteinyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:53428"/>
            <dbReference type="Rhea" id="RHEA-COMP:10131"/>
            <dbReference type="Rhea" id="RHEA-COMP:10132"/>
            <dbReference type="Rhea" id="RHEA-COMP:13555"/>
            <dbReference type="Rhea" id="RHEA-COMP:13556"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:82612"/>
            <dbReference type="ChEBI" id="CHEBI:137386"/>
            <dbReference type="ChEBI" id="CHEBI:137387"/>
            <dbReference type="EC" id="2.1.1.63"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 7">
            <text>a 6-O-methyl-2'-deoxyguanosine in DNA + L-cysteinyl-[protein] = a 2'-deoxyguanosine in DNA + S-methyl-L-cysteinyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:24000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10131"/>
            <dbReference type="Rhea" id="RHEA-COMP:10132"/>
            <dbReference type="Rhea" id="RHEA-COMP:11367"/>
            <dbReference type="Rhea" id="RHEA-COMP:11368"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:82612"/>
            <dbReference type="ChEBI" id="CHEBI:85445"/>
            <dbReference type="ChEBI" id="CHEBI:85448"/>
            <dbReference type="EC" id="2.1.1.63"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="7">This enzyme catalyzes only one turnover and therefore is not strictly catalytic. According to one definition, an enzyme is a biocatalyst that acts repeatedly and over many reaction cycles.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the MGMT family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.63" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87944.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900059.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1368"/>
    <dbReference type="EnsemblBacteria" id="SHG87944">
        <property type="protein sequence ID" value="SHG87944"/>
        <property type="gene ID" value="SAMN05444003_1368"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003908">
        <property type="term" value="F:methylated-DNA-[protein]-cysteine S-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006307">
        <property type="term" value="P:DNA dealkylation involved in DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06445">
        <property type="entry name" value="ATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00772">
        <property type="entry name" value="OGT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001497">
        <property type="entry name" value="MethylDNA_cys_MeTrfase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014048">
        <property type="entry name" value="MethylDNA_cys_MeTrfase_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036217">
        <property type="entry name" value="MethylDNA_cys_MeTrfase_DNAb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023546">
        <property type="entry name" value="MGMT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036631">
        <property type="entry name" value="MGMT_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01035">
        <property type="entry name" value="DNA_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46767">
        <property type="entry name" value="SSF46767"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53155">
        <property type="entry name" value="SSF53155"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00589">
        <property type="entry name" value="ogt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00374">
        <property type="entry name" value="MGMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0227">DNA damage</keyword>
    <keyword evidence="6 7" id="KW-0234">DNA repair</keyword>
    <keyword evidence="4 7 9" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DNA_binding_1" evidence="8">
        <location>
            <begin position="64"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile; methyl group acceptor" evidence="7">
        <location>
            <position position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001286"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001596"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00772"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG87944.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="148" mass="15627" checksum="461B6AC230F46622" modified="2017-03-15" version="1">MMVPSPVRTLGADVEGGAITRLYWDRAGTLKDGPLADQFKAELDAYFAGERLAFDLPLAPRGTEFQQAFYQALIDIPYGETRTYGDLASELGVSAQAIGQACGANPIAILIPCHRVLAADELGGFSGIGGIETKVELLKLEGAGSLLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NIC3</accession>
    <name>A0A1M5NIC3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Tryptophan--tRNA ligase</fullName>
            <ecNumber evidence="8">6.1.1.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Tryptophanyl-tRNA synthetase</fullName>
            <shortName evidence="8">TrpRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">trpS</name>
        <name evidence="10" type="ORF">SAMN05444003_1436</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the attachment of tryptophan to tRNA(Trp).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>ATP + L-tryptophan + tRNA(Trp) = AMP + diphosphate + H(+) + L-tryptophanyl-tRNA(Trp)</text>
            <dbReference type="Rhea" id="RHEA:24080"/>
            <dbReference type="Rhea" id="RHEA-COMP:9671"/>
            <dbReference type="Rhea" id="RHEA-COMP:9705"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57912"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78535"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.2"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8 9">Belongs to the class-I aminoacyl-tRNA synthetase family.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.2" evidence="8"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89270.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1436"/>
    <dbReference type="EnsemblBacteria" id="SHG89270">
        <property type="protein sequence ID" value="SHG89270"/>
        <property type="gene ID" value="SAMN05444003_1436"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004830">
        <property type="term" value="F:tryptophan-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006436">
        <property type="term" value="P:tryptophanyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00806">
        <property type="entry name" value="TrpRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00140_B">
        <property type="entry name" value="Trp_tRNA_synth_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001412">
        <property type="entry name" value="aa-tRNA-synth_I_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002305">
        <property type="entry name" value="aa-tRNA-synth_Ic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002306">
        <property type="entry name" value="Trp-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024109">
        <property type="entry name" value="Trp-tRNA-ligase_bac-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00579">
        <property type="entry name" value="tRNA-synt_1b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01039">
        <property type="entry name" value="TRNASYNTHTRP"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00233">
        <property type="entry name" value="trpS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00178">
        <property type="entry name" value="AA_TRNA_LIGASE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8 9" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="5 8 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 8 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 8 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 8 9" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="short sequence motif" description="'HIGH' region" evidence="8">
        <location>
            <begin position="31"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="8">
        <location>
            <begin position="216"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="30"/>
            <end position="32"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="38"/>
            <end position="39"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="155"/>
        </location>
        <ligand>
            <name>L-tryptophan</name>
            <dbReference type="ChEBI" id="CHEBI:57912"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="167"/>
            <end position="169"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="207"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="216"/>
            <end position="220"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000107"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00140"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU363036"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG89270.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="354" mass="39136" checksum="09AE3DA85CE628D4" modified="2017-03-15" version="1">MGKRRFLTIPDRFYTIMTQSFTPRVFSGIKPSGGLTLGNYLGAIKRFVGMQGGEFETVYCVVDMHAITVWQDPTELATATREVAAGYMAAGLDPTKSILFNQSQVSAHAELGWIFNCVARVGWMNRMTQFKDKAGSNAEKVSLGLYAYPSLMAADILLYHATHVPVGEDQKQHVELTRDIAAKFNHDFKVDFFPETEPVIEGPATRVMNLRDGTKKMSKSGESDMERINMLDDADKIAKKFKKAKTDPESLPETLDGLKDRPEARNLVDIYSALNDSTPEAVIAEYAGAGWGQFKPTLADLAVAKLAPISEEMQRLMNDPTEIDRILANGAEKARGIANPILKDTYDIVGFLRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NII8</accession>
    <name>A0A1M5NII8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Protein-disulfide isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1439</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89338.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG89338">
        <property type="protein sequence ID" value="SHG89338"/>
        <property type="gene ID" value="SAMN05444003_1439"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015036">
        <property type="term" value="F:disulfide oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001853">
        <property type="entry name" value="DSBA-like_thioredoxin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017937">
        <property type="entry name" value="Thioredoxin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01323">
        <property type="entry name" value="DSBA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00194">
        <property type="entry name" value="THIOREDOXIN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="2" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin" evidence="3">
        <location>
            <begin position="69"/>
            <end position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG89338.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="251" mass="27537" checksum="D4522441E9C8B166" modified="2017-03-15" version="1">MNDGTKRRLFFFGGLATIAVGWQMAPRIYDSLSSDFDFEPLDDPAGYRKISGGEISAPVDVFAGLDAEPSRDLSAAEASVDADFQGSLFADKQNEDAVQVAYFSDFYCPYCRILSSDLIEAAKSENIDITWHEVPLFGEPSELAARAAIAAGEQGAYVPFHDALVSRPVVVTRPYLARLADDLGLDQGQFWADFDSVQTQQKLDRASVLFDRFRLIGTPGLVVGRTLVQGRISPTNLRQLIAREHEDGHLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NIY8</accession>
    <name>A0A1M5NIY8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Peptidyl-dipeptidase Dcp Metallo peptidase. MEROPS family M03A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_1420</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="7">Binds 1 zinc ion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the peptidase M3 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88933.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900106.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1420"/>
    <dbReference type="EnsemblBacteria" id="SHG88933">
        <property type="protein sequence ID" value="SHG88933"/>
        <property type="gene ID" value="SAMN05444003_1420"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06456">
        <property type="entry name" value="M3A_DCP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1370.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034005">
        <property type="entry name" value="M3A_DCP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024079">
        <property type="entry name" value="MetalloPept_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024077">
        <property type="entry name" value="Neurolysin/TOP_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045090">
        <property type="entry name" value="Pept_M3A_M3B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001567">
        <property type="entry name" value="Pept_M3A_M3B_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43660">
        <property type="entry name" value="PTHR43660"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01432">
        <property type="entry name" value="Peptidase_M3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 7" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="2 7" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Peptidase_M3" evidence="8">
        <location>
            <begin position="226"/>
            <end position="670"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG88933.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="675" mass="75233" checksum="96381B44BA995C1C" modified="2017-03-15" version="1">MTNPLLQDWDTPFGLPPFNLIEDDHFAPAVDQALDEARAKIKAIGENPEPPTFENTIEALELAEVDLGRIFGVFYGVAGADSNPKREELQREFAPKLSAFGSEVSENKDLFQRIDTLWQQRNALDLTDEQQRVLMLSRRGFVRQGAQLEGEKSDRLREVKSRLSVLGTEFTQNLLADERDWFMPLAEAGLEGLPDFVIASARAVGAEKEADGPVVTLSRSLIVPFLQFSPRRDLRQKAYEAWAARGANGGKTDNRGIAAETLKLREERAQLLGYDTFSDYKLETEMAGTPDAVRDLLMQVWAPAKSSAEADADVLEAMLHNDGYEGPLEAWDWRYYSELRRKAEHDLDEAELKPYLQLDRMIEASFACANRLFGLEFVPLDETSYHNDVRIWNVTRDGAHVAVFIGDYFARASKRSGAWCMAMRAQQRLAGDIQPHVVNVCNFAKPPEGEPALLSYDDARTLFHEFGHALHQMLSNVTYESISGTSVARDFVELPSQLYEHWLEVPEVLAEFATHAETGQPMPKDMLDRMLAAATYDMGFQTVEYVASALVDLAFHDGPAPADPMQKQAEVLEEIGMPHAIRMRHATPHFAHVFAGDGYSSGYYSYMWSEVMDADAFAAFEEVGDPFDAGLAKKLEDTVLSSGGSVDAKELYAAFRGRLPGVDALLKGRGLDKAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NK41</accession>
    <name>A0A1M5NK41_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycosyltransferase involved in cell wall bisynthesis</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1464</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89888.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1464"/>
    <dbReference type="EnsemblBacteria" id="SHG89888">
        <property type="protein sequence ID" value="SHG89888"/>
        <property type="gene ID" value="SAMN05444003_1464"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028098">
        <property type="entry name" value="Glyco_trans_4-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13439">
        <property type="entry name" value="Glyco_transf_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_4-like_N" evidence="2">
        <location>
            <begin position="40"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="domain" description="Glycos_transf_1" evidence="1">
        <location>
            <begin position="182"/>
            <end position="342"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG89888.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="364" mass="39850" checksum="2BA3BC73D31D6757" modified="2017-03-15" version="1">MFALAVGNFSVTSQTFVHQHAQKIAPGSTVFVSHQSFDNPDLPGPHLYALKRTPQVAKSDFQVGPLARFTPRNRLISQFLKHHGVHTMMAEFGTYGVKILPAAKAAGCQFYVHFHGWDASSVLNDPTFVRRYKKMFQIADGFFAPSRFIADKLIKIGCPDDKIWVTPCGIEIADFPYSKGTPGRCLAVGRFIDKKAPHITVEAFAKAAKGNLDAHLDFVGDGPMMDEAKSVAEKFGASDQITFHGEQPHAFVKELIQTCNIFLQHSVTAENGNVEGLPVAILEAMCAGVAVVSTRHSGIPEAVLENETGLLCDEHEVDQMAASIRHLLTDPELTAKLGLAGHERAKSQFDIDLSISILRSKMRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NP00</accession>
    <name>A0A1M5NP00_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Phosphonate transport system ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1522</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91250.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900196.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1522"/>
    <dbReference type="EnsemblBacteria" id="SHG91250">
        <property type="protein sequence ID" value="SHG91250"/>
        <property type="gene ID" value="SAMN05444003_1522"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015416">
        <property type="term" value="F:ABC-type phosphonate transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03256">
        <property type="entry name" value="ABC_PhnC_transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012693">
        <property type="entry name" value="ABC_transpr_PhnC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02315">
        <property type="entry name" value="ABC_phnC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="2"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="34"/>
            <end position="41"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG91250.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="271" mass="29628" checksum="FA757FD8B222D1AB" modified="2017-03-15" version="1">MLHIDALTKRFGEKTAVDSANIEVDKPTMIGIIGRSGAGKSTLLRMVNRLSDPTEGSIVFEGENITDLKGAAKRNWQSRCAMIFQQFNLVPRMDVVSNVLHGTLNQRSTFATLFNLYPQSDIHHAIEILDRLGIAEQAPKRAEALSGGQQQRVAIARALMQDPKIILADEPIASLDPMNAQVVMQSLRTIHEEDGRMVIANLHTLDTARRYCDRVIGMRDGRIVFDGTPAQLTTGVARDIYGAGADFSEAATSTEIETLDRSAKQAAEAVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NPI7</accession>
    <name>A0A1M5NPI7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ubiquinone/menaquinone biosynthesis C-methylase UbiE</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1531</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91442.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900205.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG91442">
        <property type="protein sequence ID" value="SHG91442"/>
        <property type="gene ID" value="SAMN05444003_1531"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041698">
        <property type="entry name" value="Methyltransf_25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13649">
        <property type="entry name" value="Methyltransf_25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0830">Ubiquinone</keyword>
    <feature type="domain" description="Methyltransf_25" evidence="1">
        <location>
            <begin position="46"/>
            <end position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG91442.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="259" mass="28065" checksum="9B4984087C699F9E" modified="2017-03-15" version="1">MQDEVLYDVQVIGFLEEIWGDGFLSPGGPDEVARVLTGVDLAGGHVLDIGSGSGACGVLLVQQHKAAQVTGIDVEDPVCEAANRRAQAAGLGDRFRILKVTPGPFPFDASTFDAVFSKDSIIHIPDKASMAREAFRVLKAGGQFAASDWLISHDEAPSAQMADYIQEEGLDFAMASPSTYRKAMEDAGFVDVELVNRNPWYAKVAAQELAWLTGPKRSELSDRYGTDFIDHQVAIWTKLVGVLESGEHCPHHIRGRKPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NQL1</accession>
    <name>A0A1M5NQL1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Iron(III) transport system substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1546</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91800.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900215.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1546"/>
    <dbReference type="EnsemblBacteria" id="SHG91800">
        <property type="protein sequence ID" value="SHG91800"/>
        <property type="gene ID" value="SAMN05444003_1546"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012319120" evidence="1">
        <location>
            <begin position="19"/>
            <end position="332"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG91800.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="332" mass="36539" checksum="C246A132D1DF13E3" modified="2017-03-15" version="1">MRYLIALILGFLASTSFAQEWEDQRLFNDGAGGDALRVLSSTDTNLFAPLIEAYVAENPDTAVEYLVTGTADIDGLFREAPERFDVVISSAMDLQLKLANDGFALALDDVAHPEWAEWRNSLFAFTTEPAAIVINTAAFEGLPVPSSRQDLIGLLRDRPDLFAGRVGTYDIRRSGLGYLFATQDSRASETYWRLMEVMGGLDVRLYCCSGDMIDDLTDGTIAVAYNVLGSYAEARVESGERFKILDLSDFETTMMRTALVSKETTQVAEAASFLRAVIAYQSDDASNASPLPTLAQDGDRGAIPLDPATMTFLDSLKRKKFLEEWEDALIQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NRM8</accession>
    <name>A0A1M5NRM8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1564</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG92264.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900233.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG92264">
        <property type="protein sequence ID" value="SHG92264"/>
        <property type="gene ID" value="SAMN05444003_1564"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006626">
        <property type="entry name" value="PbH1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="SMART" id="SM00710">
        <property type="entry name" value="PbH1"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="SSF51126"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5011957330" evidence="2">
        <location>
            <begin position="21"/>
            <end position="461"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="418"/>
            <end position="439"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG92264.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="461" mass="47329" checksum="5EDC5397DE09270F" modified="2017-03-15" version="1">MFRSTVSKLVLCATASLAQADGHIFTATNEVELREALENAAAADAPVIVVAGSNIDAAAGFTFAGTGSLTLIGNGQTIATSADEDVFAATEGANLTISNLTFEGPSGFDIQNRGDADGTAGKGIFVDVRDDQTGDVIVDLFNVTVRGVANHGIHIIDCTLADECGSGGGGAGEGSDASVHVILNNVTIDDAGNGKFDADGLRVDERGAGSIRVDITGSTFQFVGADGVELDEGQAGDVISNVTDSTFANNGNYCDPAIMEAFLPDPDEGEFDEGEFAEADVPPAVEGSPDDLCIEREVNLYDDGSVEEFAFGLDLDDGYDIDEAGEGSIISVMFGSSIVDNLDEGIDFDEEDGGNIDVVFIATDASGNTDDGYKFSEEGDGDTIAVVTASSALNNGGKGFVFEEADEGDLEASLIASETKNNDDGDDTGVEAVQEGDGDGALMLIASDIEDGVDLDGVDDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-09-29" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NTZ3</accession>
    <name>A0A1M5NTZ3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">2-hydroxychromene-2-carboxylate isomerase</fullName>
            <ecNumber evidence="1">5.99.1.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1570</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>2-hydroxychromene-2-carboxylate = (3E)-4-(2-hydroxyphenyl)-2-oxobut-3-enoate</text>
            <dbReference type="Rhea" id="RHEA:27401"/>
            <dbReference type="ChEBI" id="CHEBI:59350"/>
            <dbReference type="ChEBI" id="CHEBI:59353"/>
            <dbReference type="EC" id="5.99.1.4"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the GST superfamily. NadH family.</text>
    </comment>
    <dbReference type="EC" id="5.99.1.4" evidence="1"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG92413.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900239.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG92413">
        <property type="protein sequence ID" value="SHG92413"/>
        <property type="gene ID" value="SAMN05444003_1570"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018845">
        <property type="term" value="F:2-hydroxychromene-2-carboxylate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001853">
        <property type="entry name" value="DSBA-like_thioredoxin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014440">
        <property type="entry name" value="HCCAis_GSTk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01323">
        <property type="entry name" value="DSBA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006386">
        <property type="entry name" value="HCCAis_GSTk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DSBA" evidence="3">
        <location>
            <begin position="3"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="2">
        <location>
            <position position="12"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR006386"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR006386-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG92413.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="212" mass="23136" checksum="EA40EB8D189122AB" modified="2017-03-15" version="1">MVTLDYVYSAHSAYAYLGSRKLAEICAANDVTLVHRPVLLSPVVEAQGSLPFAARTQAHVDYFFGRDIERWAEFREVPIINYRPTYHDADYRVATGMLTAAGPTGAEVDALAHAMLEAHWEDDVDLSDVSALKDIAARVGSDGDALVEAAQSADVLDAIEANISWAIKNAVFGSPTYVVVGDPFYGQDRLELVERAVKQPFAPPNWTNPPVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NVF1</accession>
    <name>A0A1M5NVF1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Lysine--tRNA ligase</fullName>
            <ecNumber evidence="8">6.1.1.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Lysyl-tRNA synthetase</fullName>
            <shortName evidence="8">LysRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">lysS</name>
        <name evidence="9" type="ORF">SAMN05444003_1612</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>ATP + L-lysine + tRNA(Lys) = AMP + diphosphate + L-lysyl-tRNA(Lys)</text>
            <dbReference type="Rhea" id="RHEA:20792"/>
            <dbReference type="Rhea" id="RHEA-COMP:9696"/>
            <dbReference type="Rhea" id="RHEA-COMP:9697"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:32551"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78529"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.6"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the class-I aminoacyl-tRNA synthetase family.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.6" evidence="8"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93448.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900277.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1612"/>
    <dbReference type="EnsemblBacteria" id="SHG93448">
        <property type="protein sequence ID" value="SHG93448"/>
        <property type="gene ID" value="SAMN05444003_1612"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004824">
        <property type="term" value="F:lysine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006430">
        <property type="term" value="P:lysyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.350">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00177">
        <property type="entry name" value="Lys_tRNA_synth_class1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020751">
        <property type="entry name" value="aa-tRNA-synth_I_codon-bd_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001412">
        <property type="entry name" value="aa-tRNA-synth_I_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008925">
        <property type="entry name" value="aa_tRNA-synth_I_cd-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002904">
        <property type="entry name" value="Lys-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37940">
        <property type="entry name" value="PTHR37940"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01921">
        <property type="entry name" value="tRNA-synt_1f"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48163">
        <property type="entry name" value="SSF48163"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00467">
        <property type="entry name" value="lysS_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00178">
        <property type="entry name" value="AA_TRNA_LIGASE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8 9" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="5 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 8" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 8" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="short sequence motif" description="'HIGH' region" evidence="8">
        <location>
            <begin position="44"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="8">
        <location>
            <begin position="290"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="293"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00177"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG93448.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="524" mass="59392" checksum="C9BE55EEC0F3813D" modified="2017-03-15" version="1">MSTFRDAAMTSKAWPFAEARALLKRYEKKDPEKGYVLFETGYGPSGLPHIGTFGEVLRTTMIRRAFEVISDIPTKLICFSDDLDGMRKVPGNVPQQEMLQGYLQMPLTSVPDPFGTHDSFGDHNNAMLQRFLDTFGFEHEFYSARSFYQSGQFDEILLRSAERYDDLMAIMLKSLREERAETYSIFLPIHPETGRVMYVPMKHVDASKGEVTFDDDDGREWTVPVTGGNVKLQWKPDFGARWAALGVDFEMYGKEHATNEKIYDAICRTLGQRPPNHFSYELFLDEKGQKISKSSGNGISIDEWLSYAATESLSYFMYQKPKTAKRMHFDVIPKAVDEYHQQLRAYADQDDAGRANNPVFHIHGHNVPASDMVVPFAMLLNLASVSGAEDKETLWGFIKRYAPDASAEKNPQMDQAAGFAVRYYNDFVKPTKVYRAPTDQERKAMEDLVARLKAWDGGLDAEELQSMVFAVGKDHDFEPLRAWFTALYEVLLGASQGPRFGGFIALYGVEETIALIENRLASET</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NY49</accession>
    <name>A0A1M5NY49_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Nucleotide-binding universal stress protein, UspA family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1656</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal stress protein A family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG94408.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900314.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1656"/>
    <dbReference type="EnsemblBacteria" id="SHG94408">
        <property type="protein sequence ID" value="SHG94408"/>
        <property type="gene ID" value="SAMN05444003_1656"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006015">
        <property type="entry name" value="Universal_stress_UspA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006016">
        <property type="entry name" value="UspA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00582">
        <property type="entry name" value="Usp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01438">
        <property type="entry name" value="UNVRSLSTRESS"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Usp" evidence="2">
        <location>
            <begin position="1"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008791"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG94408.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="144" mass="15573" checksum="D93EDAFAAF71E128" modified="2017-03-15" version="1">MIQTVLCAFDLNRPEEETAVLITAKKLADLDGAQLDVITVVPDFGATIIGAYFEAHDVETAKDRALEDLSEAVGRIIGAEANKKARHIVAVGSVYEEVLRAADLSKADLIVIGAHRLDLKDYLLGPNSARVVRHSTCSVYVVRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-09-29" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PJ64</accession>
    <name>A0A1M5PJ64_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">MFS domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1670</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH01757.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900492.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH01757">
        <property type="protein sequence ID" value="SHH01757"/>
        <property type="gene ID" value="SAMN05444003_1670"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="43"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="70"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="94"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="136"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="159"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="198"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="238"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="267"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="293"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="329"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="353"/>
            <end position="375"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="200"/>
            <end position="389"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH01757.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="389" mass="40254" checksum="FEFAAF47FAC1A2EB" modified="2017-03-15" version="1">MTVLNALYISRRPVVAFVVVGVFWGCFAALVPVYKANLGVNDAVFGTLLLGSALGLVSSMFLAPRADKILGANSMRFGIVALSLAWFLPAQATVPVMFGLLMGAVGMASGLLDVVMNARVSELEAKYDRPLMNANHAMFSVAYGASALITGFAREAGLSPTYIVAGFACFCILLVPFMRMDVAVVDADEEAKAARYPLWPIVICGLITLSAFMTEATVEAWSALHIERTLGGGAKEGALGPAMLGFTMAFGRFSGQAVSERLSDVTVVIGGSIIAASGAILAALAGTPLVAQIGFGIFGLGVSVIGPIGISMVGHLVRPHLRTEAISRVAVIGFSGFFFAPMLMGLVSEAFGLRIAFLCVAGVILCAVPLVLIAARLPKIGAASTTAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PJI4</accession>
    <name>A0A1M5PJI4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1665</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH01659.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900488.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH01659">
        <property type="protein sequence ID" value="SHH01659"/>
        <property type="gene ID" value="SAMN05444003_1665"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd20169">
        <property type="entry name" value="Peptidase_M90_mtfA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.472.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024079">
        <property type="entry name" value="MetalloPept_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010384">
        <property type="entry name" value="MtfA_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042252">
        <property type="entry name" value="MtfA_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30164">
        <property type="entry name" value="PTHR30164"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06167">
        <property type="entry name" value="Peptidase_M90"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH01659.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="270" mass="30799" checksum="356CE8191E25755B" modified="2017-03-15" version="1">MFYLFFIALPLIVLAVFLYRWFQRQSRRNKLLATPLTAEQRQIVDKLVPITHHLPEELRPALEGKMNLFLDQITFHGNGIEITEEMKLSIAAQACLLVVNSPSWYDTLRTVLIYPTAFHSRHQRRDGYVVSEQDNIVLGESWARGPVILSWPHALQGGLDDHDGHNVVIHEFTHQLDELTGSTNGIPVLRKGQAYEAWEKAMLDAFGAHVARVEHGRKTLIDPYGATGHEEFFAEAIVTFFEKPNAFRREEPALYAQFSELLALDPAEWG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PKU5</accession>
    <name>A0A1M5PKU5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Phosphate starvation-inducible protein PhoH</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1701</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PhoH family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02378.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900517.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1701"/>
    <dbReference type="EnsemblBacteria" id="SHH02378">
        <property type="protein sequence ID" value="SHH02378"/>
        <property type="gene ID" value="SAMN05444003_1701"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003714">
        <property type="entry name" value="PhoH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02562">
        <property type="entry name" value="PhoH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PhoH" evidence="4">
        <location>
            <begin position="131"/>
            <end position="334"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010393"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02562"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH02378.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="338" mass="37275" checksum="9A898B112F95C749" modified="2017-03-15" version="1">MATSALTPPAEHPAELLLEFPDNFLLIDLCGEYDRNLATIENALSVQILRRGNQLAVLGEEDSLATAARVLQAIYQRLEAGKSLEVGDIDRELRMGPGTNPAPIDTDDQKELFKGDPNANRVEIKTRKKLIEPRTEAQKAYVKSLFDNELAFGIGPAGTGKTYLAVAVGVNMFINGHVDRIILSRPAVEAGEKLGYLPGDMKDKVDPYMQPLYDALNDFLPGKQAAKLIEEKRIEIAPLAFMRGRTLSNAFVVLDEAQNATSMQMKMFLTRLGEGSRMVITGDRTQIDLPRGVSSGLWDAERLLKSIPKISFNYFTSKDVVRHPLVAAIIEAYEADEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PN90</accession>
    <name>A0A1M5PN90_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1742</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03176.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH03176">
        <property type="protein sequence ID" value="SHH03176"/>
        <property type="gene ID" value="SAMN05444003_1742"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH03176.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="49" mass="5629" checksum="6C8CF0AE7574E2D9" modified="2017-03-15" version="1">MSNLQFLLLIEAFLTLTLTSFIWFIATWDAEKEQPVSLTVPTPTERDLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PSQ2</accession>
    <name>A0A1M5PSQ2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1799</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04303.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900599.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1799"/>
    <dbReference type="EnsemblBacteria" id="SHH04303">
        <property type="protein sequence ID" value="SHH04303"/>
        <property type="gene ID" value="SAMN05444003_1799"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH04303.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="118" mass="13496" checksum="954163DFA055508F" modified="2017-03-15" version="1">MNDFLPIEVREGLKAARKASLKRNDRLCVHDGDDVYRVRRFWDTGLSLDVEHGDKLRGRVEIYDGARHLYQCLIINSRLEGEEYIFDFKWLNPVSVHPAADFVRPDAVPAGLLTKASA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PUR8</accession>
    <name>A0A1M5PUR8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Thiosulfate/3-mercaptopyruvate sulfurtransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1843</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05199.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900637.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1843"/>
    <dbReference type="EnsemblBacteria" id="SHH05199">
        <property type="protein sequence ID" value="SHH05199"/>
        <property type="gene ID" value="SAMN05444003_1843"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016783">
        <property type="term" value="F:sulfurtransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.250.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001763">
        <property type="entry name" value="Rhodanese-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036873">
        <property type="entry name" value="Rhodanese-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045078">
        <property type="entry name" value="TST/MPST-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11364">
        <property type="entry name" value="PTHR11364"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00581">
        <property type="entry name" value="Rhodanese"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00450">
        <property type="entry name" value="RHOD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52821">
        <property type="entry name" value="SSF52821"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50206">
        <property type="entry name" value="RHODANESE_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Rhodanese" evidence="2">
        <location>
            <begin position="22"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="domain" description="Rhodanese" evidence="2">
        <location>
            <begin position="169"/>
            <end position="283"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH05199.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="287" mass="31887" checksum="D5C214822E2F2D18" modified="2017-03-15" version="1">MTDFIDDPKTLVSTDWLADHIKDPDLRILDASWYLPAMNRDAKAEFAKAHIPNARFFDIDDISDHRSELPHIVPPVEKFMSRLRAMGVGDGHLVVVYDGAGLFSAARVWWLFRLMGQMNVAVLDGGLPKWIAEGREVNDQPPVIRDRHMTVTRNSHMVRDVTEVARAAKLGDHTILDARPGDRFRGEAEEPREGMRSGHIPNSQNVFFRDLLNADGTMKSNADLIKAFEASGADLSKPVITTCGSGVTAAVLSLALERIGKTDHSLYDGSWSEWGMYHDLPIATGND</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PV36</accession>
    <name>A0A1M5PV36_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1878</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05887.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900667.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1878"/>
    <dbReference type="EnsemblBacteria" id="SHH05887">
        <property type="protein sequence ID" value="SHH05887"/>
        <property type="gene ID" value="SAMN05444003_1878"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="6"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="74"/>
            <end position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH05887.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="108" mass="12412" checksum="CD3493740C3560F0" modified="2017-03-15" version="1">MNRTEFIIATAVILFVAFALGWFASWLVNRFTRVTKAEIGELDRMAQGLHEAEETRDQAITYMQQREAEMTNQLTQTEAELRAAMDGLRDARQEAEELRAYVERQNAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PVM4</accession>
    <name>A0A1M5PVM4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Branched-chain amino acid transport protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1888</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06097.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900674.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1888"/>
    <dbReference type="EnsemblBacteria" id="SHH06097">
        <property type="protein sequence ID" value="SHH06097"/>
        <property type="gene ID" value="SAMN05444003_1888"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008407">
        <property type="entry name" value="Brnchd-chn_aa_trnsp_AzlD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05437">
        <property type="entry name" value="AzlD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="42"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="91"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH06097.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="111" mass="11923" checksum="D48CD3416B3874E3" modified="2017-03-15" version="1">MSYSNTEIWIIIAVLAVCTYLIRFSFLGLIGDRAMPPLVMRLLRYTPVAVLPGMVAPLVLWPMATDGVFDPARAIAAFCALGGAYMGRNPLWGMVAGGIALYAGLFLTGQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PXL0</accession>
    <name>A0A1M5PXL0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1883</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05993.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900672.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH05993">
        <property type="protein sequence ID" value="SHH05993"/>
        <property type="gene ID" value="SAMN05444003_1883"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045936">
        <property type="entry name" value="DUF6356"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19883">
        <property type="entry name" value="DUF6356"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="31"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH05993.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="71" mass="8008" checksum="DD98DE12A2122B69" modified="2017-03-15" version="1">MATSTLQKLFTEHPASVDETYFEHMRFASSFAFWLFVAAGAALVHAVVPALCETTASRIITRLHNRMTNRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PYJ1</accession>
    <name>A0A1M5PYJ1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Molybdenum cofactor synthesis domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1925</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06770.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900706.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1925"/>
    <dbReference type="EnsemblBacteria" id="SHH06770">
        <property type="protein sequence ID" value="SHH06770"/>
        <property type="gene ID" value="SAMN05444003_1925"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00885">
        <property type="entry name" value="cinA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.980.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036425">
        <property type="entry name" value="MoaB/Mog-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001453">
        <property type="entry name" value="MoaB/Mog_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00994">
        <property type="entry name" value="MoCF_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00852">
        <property type="entry name" value="MoCF_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53218">
        <property type="entry name" value="SSF53218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MoCF_biosynth" evidence="1">
        <location>
            <begin position="7"/>
            <end position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH06770.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="240" mass="25705" checksum="7D8B72D705D102A4" modified="2017-03-15" version="1">MQNPTAAMLVIGDEILSGRTRDANMHHLANELTAVGIDLKEVRVVSDDPNAITGSVRELSDRYDNVFTSGGIGPTHDDITADCVAKAFGAHIDIRNDARELLQAHYDRNGQELNEARLRMARIPDGALLIDNPVSTAPGFTIKNVHVMAGVPKVFTAMVASVLATLTTGQPLLSRSLHVIRGEGDIAGPLGVFAEKFGDLSVGSYPFQKDGVYGANLVLRGQDAVRLDAAMTELTAIFEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PZ00</accession>
    <name>A0A1M5PZ00_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ornithine cyclodeaminase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1943</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07084.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900719.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1943"/>
    <dbReference type="EnsemblBacteria" id="SHH07084">
        <property type="protein sequence ID" value="SHH07084"/>
        <property type="gene ID" value="SAMN05444003_1943"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1780.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003462">
        <property type="entry name" value="ODC_Mu_crystall"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023401">
        <property type="entry name" value="ODC_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13812">
        <property type="entry name" value="PTHR13812"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02423">
        <property type="entry name" value="OCD_Mu_crystall"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001439">
        <property type="entry name" value="CryM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH07084.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="303" mass="33128" checksum="9D762D8F5F91C4E6" modified="2017-03-15" version="1">MVEMISFEEADPLLDWIALTDALASGHDAAKAEIADVFLYQDENTLLNRSAWIKGMGVAVKCATIFPGNPSQGKGMIDGAVNLFSGDDGRLEAILDFHLVTKWKTSGDSLLGARKLARRDSQKILLVGAGNVGQALRHAYGSLFPDATFSIWNRSEAGAKRFHAANPDVAIAIDLESAVRSADIIASATMTTDPIIKGEWLQPGQHVDLIGAYRPDMREVDDTALSRARIFVDNMHTTADHIGELKIPIAEGKLSRDDIVADFYNLDAFERQSDDEITLFKNGGGAHLDLMTSRYILDVWKNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q020</accession>
    <name>A0A1M5Q020_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">OmpA-OmpF porin, OOP family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1928</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06813.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900708.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1928"/>
    <dbReference type="EnsemblBacteria" id="SHH06813">
        <property type="protein sequence ID" value="SHH06813"/>
        <property type="gene ID" value="SAMN05444003_1928"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07185">
        <property type="entry name" value="OmpA_C-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006664">
        <property type="entry name" value="OMP_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006665">
        <property type="entry name" value="OmpA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036737">
        <property type="entry name" value="OmpA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00691">
        <property type="entry name" value="OmpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01021">
        <property type="entry name" value="OMPADOMAIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103088">
        <property type="entry name" value="SSF103088"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51123">
        <property type="entry name" value="OMPA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012500005" evidence="3">
        <location>
            <begin position="19"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="domain" description="OmpA-like" evidence="4">
        <location>
            <begin position="187"/>
            <end position="306"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH06813.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="307" mass="33170" checksum="F28E2C8E4A813903" modified="2017-03-15" version="1">MKVWGLLFLALIAAPALAQDLRLPSNAELTFEEVIPDLGGRLPKAAWDGASVPSISVDGDFVNRSWRLESSGLSSAQIMRSIREQLANARFGTLLDCEARECGGFDFRFAIDVIRPPHMEVNLADYRFLSAKRDDLGILVLTSRTKGAGYLQITQIGASAQDSVIETTEAPTQGFQSTESDLSIEAQLEQFGRAVLEGLEFERGSSQLGAGPFESLEELATLLRARPSLEVALVGHTDSEGSLNGNIALSKRRAGSVLERLATDLGVSRQQMEAEGMGYLSPLANNLTSEGREANRRVEVIITSTDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q259</accession>
    <name>A0A1M5Q259_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Glutamate synthase domain-containing protein 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1993</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the glutamate synthase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08030.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1993"/>
    <dbReference type="EnsemblBacteria" id="SHH08030">
        <property type="protein sequence ID" value="SHH08030"/>
        <property type="gene ID" value="SAMN05444003_1993"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015930">
        <property type="term" value="F:glutamate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006537">
        <property type="term" value="P:glutamate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02808">
        <property type="entry name" value="GltS_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024188">
        <property type="entry name" value="GltB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002932">
        <property type="entry name" value="Glu_synthdom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01645">
        <property type="entry name" value="Glu_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006429">
        <property type="entry name" value="GOGAT_lg_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="6"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="domain" description="Glu_synthase" evidence="4">
        <location>
            <begin position="150"/>
            <end position="467"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR006429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH08030.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="503" mass="54578" checksum="1F0E3E668F98C559" modified="2017-03-15" version="1">MMSPMFSAFTINVISVLAVLFILVVGLIVLVVIITFIIDRSQRTDAIRRNYPVLGRFRHYFSALGEFFRQYFFAMDREELPFNRAQREWISRAGGGKGNTVAFGSTRNLATPGTPIFVNAAFPPLDEQAAKTEPMLIGPNAREPYLAPSIFNLSGMSYGAISKPAVRALSKGCAEAGVWMNTGEGGVSPYHLEGGCDLVFQMGTAKYGVRDPEGNLDEDKLRKVAAHDQVKMIEIKLAQGAKPGKGGILPASKVNAEIAEIRGIKIGESSLSPNRHVEIDDFEDLLDFIARVREVSGLPVGIKTVMGSGAAFEELFALINERGHESAPDFISLDGGEGGTGASPMPLIDLVGVSIREALPHVARLRNEAGLKDRIRLIASGKLVNPSDVAWALCAGADFVTSARGFMFSLGCIQALKCNKNTCPTGITTHDPRFQKGLVVEEKYQRVAKYAESIVKEVEVIAHSVGVSEPRQMKRSHVRIVQADGSSVPLDILQERYKSLATT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q723</accession>
    <name>A0A1M5Q723_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Nucleoside-diphosphate-sugar epimerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2084</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09818.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900839.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2084"/>
    <dbReference type="EnsemblBacteria" id="SHH09818">
        <property type="protein sequence ID" value="SHH09818"/>
        <property type="gene ID" value="SAMN05444003_2084"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH09818.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="286" mass="31183" checksum="976AB11A6EB19103" modified="2017-03-15" version="1">MDKTLLSFGHGYSAAALARILEPQVWRIIGTSRSEDKLSTFMEAGVEPRLWPGADMTPALNAATHLLISPAPTEAGDPVLAQLRDEITKRADQFEWVGYLSTTGVYGDHYGGWVDENSPLTPATKRGQLRVMAEGEWGAIPNLPLHIFRLAGIYGPGRGPFSKVRNGTARRIIKEGQIFSRIHVEDIAQVLAASITQPNPGAAYNLCDDDPAPPQDVIGYAAELLGVPIPEAVNFEDADLSPMARSFYAESKKVRNDKIKNELGVTLKYPDYRTGLRALLAQETSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q7G5</accession>
    <name>A0A1M5Q7G5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Voltage-gated sodium channel</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2086</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09860.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH09860">
        <property type="protein sequence ID" value="SHH09860"/>
        <property type="gene ID" value="SAMN05444003_2086"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005261">
        <property type="term" value="F:cation channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.350">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005821">
        <property type="entry name" value="Ion_trans_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043203">
        <property type="entry name" value="VGCC_Ca_Na"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027359">
        <property type="entry name" value="Volt_channel_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10037">
        <property type="entry name" value="PTHR10037"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00520">
        <property type="entry name" value="Ion_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0407">Ion channel</keyword>
    <keyword evidence="7" id="KW-0406">Ion transport</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="1 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="78"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="122"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="193"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="domain" description="Ion_trans" evidence="6">
        <location>
            <begin position="17"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH09860.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="255" mass="28392" checksum="B80CBD3A77F7C22E" modified="2017-03-15" version="1">MRAQVAEFMDSALARNTIIGVIVFNAIILGLETSPAVMARFGGILTIVDQICLWIFVVEILLKLYAHRLAFFKNGWNIFDFIIVGIALVPASEGFSVLRALRILRVMRVMSAAPSLRRVVEGFITALPGMGSVFLLMAIIFYIGAVIATKLFGPDFPQWFGDLGQSAYSLFQIMTLESWSMGIVRPVMEVHPYAWAFFVPFIMVTTFAVVNLLVGLIVNSMQDAHSEEDNAATDAYRDEVMAKLEAIEKRLEERG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QJP9</accession>
    <name>A0A1M5QJP9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Taurine transport system ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2147</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14000.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900957.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2147"/>
    <dbReference type="EnsemblBacteria" id="SHH14000">
        <property type="protein sequence ID" value="SHH14000"/>
        <property type="gene ID" value="SAMN05444003_2147"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015859">
        <property type="entry name" value="ABC_transpr_TauB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42788:SF18">
        <property type="entry name" value="PTHR42788:SF18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="4"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="41"/>
            <end position="48"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH14000.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="269" mass="29486" checksum="1E509BC8D6C81009" modified="2017-03-15" version="1">MSGLKINSISMRFDLPNGSSVQALKDVSLDLKAGELMSVLGPSGCGKTTLLNIVAGFLAPTEGTIELNGNTVEGPGPERGMVFQQGALFEWMSVRDNVSFGPRMKGQKAAEYSQEVDHLLDVVGLQDFKEKAIYELSGGMQQRVALARCLANDPDVILMDEPLGALDALTREKMQGLVLKLWKETGKTIILITHSVEEALLLGERLIVMAPRPGRIHKEYNLPFADMGVGQDLREVKKDPRFGQVREEILSMIWDMEEEIMGRTEGAGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QJX8</accession>
    <name>A0A1M5QJX8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Arabinose-5-phosphate isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_2151</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the SIS family. GutQ/KpsF subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14080.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900963.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2151"/>
    <dbReference type="EnsemblBacteria" id="SHH14080">
        <property type="protein sequence ID" value="SHH14080"/>
        <property type="gene ID" value="SAMN05444003_2151"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901135">
        <property type="term" value="P:carbohydrate derivative metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05014">
        <property type="entry name" value="SIS_Kpsf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004800">
        <property type="entry name" value="KdsD/KpsF-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001347">
        <property type="entry name" value="SIS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035474">
        <property type="entry name" value="SIS_Kpsf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01380">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004692">
        <property type="entry name" value="KdsD_KpsF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SSF53697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00393">
        <property type="entry name" value="kpsF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51464">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0129">CBS domain</keyword>
    <keyword evidence="8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="SIS" evidence="7">
        <location>
            <begin position="36"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="6">
        <location>
            <begin position="204"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="6">
        <location>
            <begin position="268"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="77"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="site" description="Catalytically relevant" evidence="4">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <feature type="site" description="Catalytically relevant" evidence="4">
        <location>
            <position position="106"/>
        </location>
    </feature>
    <feature type="site" description="Catalytically relevant" evidence="4">
        <location>
            <position position="147"/>
        </location>
    </feature>
    <feature type="site" description="Catalytically relevant" evidence="4">
        <location>
            <position position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008165"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR004692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR004692-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR004692-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH14080.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="320" mass="33353" checksum="DFE0D2D79265C267" modified="2017-03-15" version="1">MSDVSQHLDTARRVIREEAAGLEALANGLGDGFAEAVAMILSAKGRIIVSGIGKSGHIARKIAATLASTGTPAQFVHPAEASHGDLGMVTSDDIVLALSNSGEAPELANLVAYTRRFQIPLIALSSRPGSTLATQADVRLNIPQLGEACGHGVVPTISTTMSLAVGDALAIALMEARNFTPENFREFHPGGKLGARLAKVSDLMHDGDAIPLTSPDTSMSETLLVISEKGLGVVGLSNQDGTLAGIITDGDLRRHMDGLLDKHAGDVMTENPTTIEPSALAEKAVAIMNEKQITCLFVVDNNTKPVGVLKIQDCLRAGVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QL17</accession>
    <name>A0A1M5QL17_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Transcription termination/antitermination protein NusA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">nusA</name>
        <name evidence="9" type="ORF">SAMN05444003_2184</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Participates in both transcription termination and antitermination.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Monomer. Binds directly to the core enzyme of the DNA-dependent RNA polymerase and to nascent RNA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the NusA family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14767.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901015.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2184"/>
    <dbReference type="EnsemblBacteria" id="SHH14767">
        <property type="protein sequence ID" value="SHH14767"/>
        <property type="gene ID" value="SAMN05444003_2184"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006353">
        <property type="term" value="P:DNA-templated transcription, termination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031564">
        <property type="term" value="P:transcription antitermination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1480.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00945_B">
        <property type="entry name" value="NusA_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010995">
        <property type="entry name" value="DNA_repair_Rad51/TF_NusA_a-hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004087">
        <property type="entry name" value="KH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025249">
        <property type="entry name" value="KH_dom_NusA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009019">
        <property type="entry name" value="KH_sf_prok-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030842">
        <property type="entry name" value="NusA_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036555">
        <property type="entry name" value="NusA_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022967">
        <property type="entry name" value="S1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013735">
        <property type="entry name" value="TF_NusA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010214">
        <property type="entry name" value="Tscrpt_termin_fac_NusA_C_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010213">
        <property type="entry name" value="Tscrpt_termination_fac_NusA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22648">
        <property type="entry name" value="PTHR22648"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13184">
        <property type="entry name" value="KH_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08529">
        <property type="entry name" value="NusA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00322">
        <property type="entry name" value="KH"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00316">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47794">
        <property type="entry name" value="SSF47794"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54814">
        <property type="entry name" value="SSF54814"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69705">
        <property type="entry name" value="SSF69705"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01953">
        <property type="entry name" value="NusA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01954">
        <property type="entry name" value="nusA_Cterm_rpt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5 6" id="KW-0804">Transcription</keyword>
    <keyword evidence="6" id="KW-0889">Transcription antitermination</keyword>
    <keyword evidence="4 6" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="1 6" id="KW-0806">Transcription termination</keyword>
    <feature type="domain" description="S1" evidence="7">
        <location>
            <begin position="141"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="domain" description="KH" evidence="8">
        <location>
            <begin position="237"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="domain" description="KH" evidence="8">
        <location>
            <begin position="311"/>
            <end position="374"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00945"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00322"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH14767.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="539" mass="60254" checksum="49E0F84DBC261297" modified="2017-03-15" version="1">MAITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGSEMDIRVSIDRKTGKATFTRVRTVVEDELLENYQAEFTVEQAKQYMENPEVGQQFIEEVPPVEMGRIAAQSAKQVILQKVREAERDKQYEEFKDRAGTIINAAVKREEYGNVIVDVGAGEAVLRRNEKIGREAYRPNDRIRCYIKDVRREQRGPQIFLSRTAPEFMAELFKMEVPEIYEGIIEIKAVARDPGSRAKIAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDMPTFLVNALQPAEVAKVVLDEEAGKIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDILTEEEESKRRQAEFEVRTKMFMETLDLDEFFAQLIVSEGFTSLEEVAYVEIEELLVIEGVDEDTASELQARARDYLDAQNKKAMDHARELGVEDSLVEFEGLTPRMIEALAEDGVKTLEDFATCADWELAGGWTMVDGERVKDDGVLEKFDVSLEEAQDLVMTARVMLGWVDPEELAAAAAEAEEGEAAEEAEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QMP9</accession>
    <name>A0A1M5QMP9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 6">Ribokinase</fullName>
            <shortName evidence="6">RK</shortName>
            <ecNumber evidence="2 6">2.7.1.15</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rbsK</name>
        <name evidence="8" type="ORF">SAMN05444003_2212</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>ATP + D-ribose = ADP + D-ribose 5-phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13697"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:47013"/>
            <dbReference type="ChEBI" id="CHEBI:78346"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.15"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="6">Requires a divalent cation, most likely magnesium in vivo, as an electrophilic catalyst to aid phosphoryl group transfer. It is the chelate of the metal and the nucleotide that is the actual substrate.</text>
    </comment>
    <comment type="activity regulation">
        <text evidence="6">Activated by a monovalent cation that binds near, but not in, the active site. The most likely occupant of the site in vivo is potassium. Ion binding induces a conformational change that may alter substrate affinity.</text>
    </comment>
    <comment type="pathway">
        <text evidence="6">Carbohydrate metabolism; D-ribose degradation; D-ribose 5-phosphate from beta-D-ribopyranose: step 2/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the carbohydrate kinase PfkB family. Ribokinase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.15" evidence="2 6"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15365.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901063.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2212"/>
    <dbReference type="EnsemblBacteria" id="SHH15365">
        <property type="protein sequence ID" value="SHH15365"/>
        <property type="gene ID" value="SAMN05444003_2212"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00916">
        <property type="reaction ID" value="UER00889"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004747">
        <property type="term" value="F:ribokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019303">
        <property type="term" value="P:D-ribose catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01174">
        <property type="entry name" value="ribokinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01987">
        <property type="entry name" value="Ribokinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011877">
        <property type="entry name" value="D_ribokin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011611">
        <property type="entry name" value="PfkB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002139">
        <property type="entry name" value="Ribo/fructo_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00294">
        <property type="entry name" value="PfkB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00990">
        <property type="entry name" value="RIBOKINASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="SSF53613"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 8" id="KW-0418">Kinase</keyword>
    <keyword evidence="4 6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 6" id="KW-0630">Potassium</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PfkB" evidence="7">
        <location>
            <begin position="4"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="10"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="38"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="6">
        <location>
            <position position="240"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="136"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="179"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="205"/>
            <end position="210"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="234"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="236"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="239"/>
            <end position="240"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="240"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="270"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="273"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="275"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH15365.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="291" mass="30828" checksum="118148FEFD911999" modified="2017-03-15" version="1">MTIWNLGSINADFVYSVPHIPAPGETLASTDRQVFLGGKGTNMSVAAARAGTHVRHIGAVGADGRWAIDRLLEYGVDTRSIAEVAHETAQAIIAVDSSGENSIILFQGANVQIPLDALQSALAEAAVGDWFVCQNETNLQAEGVRMARELGLKVAYAAAPFDADAVEALIEYLDFLILNEIEMGQLRASLGKEPKDLGIDTVIVTKGGYGADLYSSSNDWEPTSFEAIPVSPIDTTGAGDTFTGYVLAGLDRGLPLDQSIHLATKAGALMVTRQGTADVIPDLAEVRDFRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QMV1</accession>
    <name>A0A1M5QMV1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">L,D-transpeptidase catalytic domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2198</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the YkuD family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15070.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901035.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2198"/>
    <dbReference type="EnsemblBacteria" id="SHH15070">
        <property type="protein sequence ID" value="SHH15070"/>
        <property type="gene ID" value="SAMN05444003_2198"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071972">
        <property type="term" value="F:peptidoglycan L,D-transpeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd16913">
        <property type="entry name" value="YkuD_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005490">
        <property type="entry name" value="LD_TPept_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038063">
        <property type="entry name" value="Transpep_catalytic_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03734">
        <property type="entry name" value="YkuD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141523">
        <property type="entry name" value="SSF141523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="YkuD" evidence="4">
        <location>
            <begin position="67"/>
            <end position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF03734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH15070.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="197" mass="22222" checksum="D297A207E6B10530" modified="2017-03-15" version="1">MAEFLKSSLSRRAFVAGSAAVLGTAATGQTENSTEVEAEISGAVERNISSFRSLDWQPYFDNLNNGAVLVDIQSRALHYWSEDESIYKLYPTSVPLTEDLTRLGRTEIIRKVEGPSWRPTPSMRERNPEWPEFIGPGPDNPMGTHALYLTWQYYRIHGTHDTRKIGRRSSNGCIGLYNEHIAELYNMTKVGTQVLLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QTH4</accession>
    <name>A0A1M5QTH4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Glycine cleavage system H protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">gcvH</name>
        <name evidence="6" type="ORF">SAMN05444003_2303</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>(R)-lipoate</name>
            <dbReference type="ChEBI" id="CHEBI:83088"/>
        </cofactor>
        <text evidence="3">Binds 1 lipoyl cofactor covalently.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">The glycine cleavage system is composed of four proteins: P, T, L and H.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the GcvH family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17176.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901201.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2303"/>
    <dbReference type="EnsemblBacteria" id="SHH17176">
        <property type="protein sequence ID" value="SHH17176"/>
        <property type="gene ID" value="SAMN05444003_2303"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005960">
        <property type="term" value="C:glycine cleavage complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019464">
        <property type="term" value="P:glycine decarboxylation via glycine cleavage system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06848">
        <property type="entry name" value="GCS_H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00272">
        <property type="entry name" value="GcvH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003016">
        <property type="entry name" value="2-oxoA_DH_lipoyl-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000089">
        <property type="entry name" value="Biotin_lipoyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002930">
        <property type="entry name" value="GCV_H"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033753">
        <property type="entry name" value="GCV_H/Fam206"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017453">
        <property type="entry name" value="GCV_H_sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011053">
        <property type="entry name" value="Single_hybrid_motif"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11715">
        <property type="entry name" value="PTHR11715"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01597">
        <property type="entry name" value="GCV_H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51230">
        <property type="entry name" value="SSF51230"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00527">
        <property type="entry name" value="gcvH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50968">
        <property type="entry name" value="BIOTINYL_LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00189">
        <property type="entry name" value="LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 4" id="KW-0450">Lipoyl</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lipoyl-binding" evidence="5">
        <location>
            <begin position="16"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-lipoyllysine" evidence="3 4">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009249"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR617453-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH17176.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="119" mass="13069" checksum="2E0381582ED9AC8E" modified="2017-03-15" version="1">MKFTEEHEWLKQDGDLVVVGITEHAATQLGDIVFVELPEAGTEVAKDDEVVVIESVKAASDILAPIDGEIVEVNEALGDEPAKVNDDPMEGGWFFKIKPSDPSQMDEYMDEAAYKAMVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QUZ9</accession>
    <name>A0A1M5QUZ9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2330</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17788.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH17788">
        <property type="protein sequence ID" value="SHH17788"/>
        <property type="gene ID" value="SAMN05444003_2330"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH17788.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="35" mass="4134" checksum="DA17C8875F9EB059" modified="2017-03-15" version="1">MPAYLVDLLAWSAAFIILFFGIRYLQNRKSDKDEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QVE6</accession>
    <name>A0A1M5QVE6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Methyltransferase FkbM domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2325</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17679.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901241.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH17679">
        <property type="protein sequence ID" value="SHH17679"/>
        <property type="gene ID" value="SAMN05444003_2325"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026913">
        <property type="entry name" value="METTL24"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32026">
        <property type="entry name" value="PTHR32026"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH17679.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="267" mass="30417" checksum="F0AF44AC04F604A2" modified="2017-03-15" version="1">MTEKHMGSAGASKDATDHDRIFELLALLTPWDIDLDKFRIGRRGDGGYVAADQLHPKQAILSYGISNEVSFDLEMAEAGFKVWQFDHTIDGAPVVHDNLIFHKEGVAGRDRPEEKLFTVESHAERFGINLDGAILKMDVEGSEWDVFSTMPETVLAKFDQIYVEFHGLARIARPRFAPVFKVVMEKLNRHFTLFHVHANNARPLVQIENYVTPGLLEASFIRTELVDRSASNTWYPTELDEPNMRNRPDLNLWLFPFAPRPSDPLSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QWM8</accession>
    <name>A0A1M5QWM8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Taurine dioxygenase, alpha-ketoglutarate-dependent</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2355</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2355"/>
    <dbReference type="EnsemblBacteria" id="SHH18321">
        <property type="protein sequence ID" value="SHH18321"/>
        <property type="gene ID" value="SAMN05444003_2355"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042098">
        <property type="entry name" value="TauD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003819">
        <property type="entry name" value="TauD/TfdA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02668">
        <property type="entry name" value="TauD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TauD" evidence="2">
        <location>
            <begin position="17"/>
            <end position="300"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02668"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH18321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="316" mass="35104" checksum="4CFE5AB2B5E3C4B0" modified="2017-03-15" version="1">MQEEEEMKKFFAPNPNTELNAWIADNFDQVKDGLDQAGLVLFRGFDTEDAATLKNTLGLFGADPMTDARWSTPRSSVGEGAFTSTEYPAEQWIVLHSEMSYARLWPRLLMFQCKIAAETGGATTIADLQAVSDSLGDIVAEFHEREVIYQRNFRAGLDIPWQTAFGTEDKDEVLEIGRRNGLEVEWRPDGTLRTAQQAQGAIEGPNGALWFNQAHLFHPCQLPSQTRQALVAALGADGLPRNAVFGDGEPIPDATIERILEVLTQHTESIDWQDNDLSIIDNMRWMHGRSPFTGSRKVLAAMGQPQEAPALTPVFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R0V0</accession>
    <name>A0A1M5R0V0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phytoene synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2413</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19423.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901374.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2413"/>
    <dbReference type="EnsemblBacteria" id="SHH19423">
        <property type="protein sequence ID" value="SHH19423"/>
        <property type="gene ID" value="SAMN05444003_2413"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004311">
        <property type="term" value="F:farnesyltranstransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016117">
        <property type="term" value="P:carotenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd00683">
        <property type="entry name" value="Trans_IPPS_HH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.600.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008949">
        <property type="entry name" value="Isoprenoid_synthase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002060">
        <property type="entry name" value="Squ/phyt_synthse"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019845">
        <property type="entry name" value="Squalene/phytoene_synthase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044843">
        <property type="entry name" value="Trans_IPPS_bact-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033904">
        <property type="entry name" value="Trans_IPPS_HH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00494">
        <property type="entry name" value="SQS_PSY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01212">
        <property type="entry name" value="Phytoene_synthase_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01018">
        <property type="entry name" value="Squalene/Phytoene_Synthase_Lik"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48576">
        <property type="entry name" value="SSF48576"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01044">
        <property type="entry name" value="SQUALEN_PHYTOEN_SYN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01045">
        <property type="entry name" value="SQUALEN_PHYTOEN_SYN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH19423.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="338" mass="37288" checksum="1BB43DD06ABB5DBF" modified="2017-03-15" version="1">MIRPDDLEHCRAAIRTGSLSFYAASKLLPASVRDPSLALYAFCRLADDEVDEGDQKASAVLRLRDRLDLAYEGRPQNAPEDRAFAAIIDEFDMPRELPEALLEGLAWDAMGRRYATLSDVRVYSARVASAVGAMMCVLMRVRDPDTLARACDLGVAMQLTNIARDVGEDARAGRIYLPTDWFENAGIDVEGFLGDPKISTDIAQMVKRLLEHARQLYVRSQAGINALPLNARTGIWAARLVYDGIGTEVRRHHYNSIDQRAHTSKTQKLGWLAQAAGHSVLSLVTPKSPVLYAAPLPEVAFLVDAAGDRRPPQKRSQAVLDVLAELTLQDAALDIQRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R2Q9</accession>
    <name>A0A1M5R2Q9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA-binding transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2461</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH20396.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH20396">
        <property type="protein sequence ID" value="SHH20396"/>
        <property type="gene ID" value="SAMN05444003_2461"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH20396.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="275" mass="31084" checksum="378BBB22FDD86400" modified="2017-03-15" version="1">MDNWEDLKLLLALSRYKTMTASAYILGISTATVSRRLERLTDELGETLFVRRGSELEPTESAKRLITIADQLDTDLWASQKADNTEHIASRRLRISISMLTIMSIDIHHFENLLTDKSLKIDLYEDKRSVAFGEVDIAVSSEEPTEGRLVRTQIGKIDFGVYIHEDWSIDPTGFIALTKVGTDYEGMPYSVVLEDRFGPPRVVTSGLCFAIALAKAMPFALCLPDKLAQRHPELVPLSDDLAIEHCTVWAAYHENRRLDPEIRLGIDFLKKSFLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RAW0</accession>
    <name>A0A1M5RAW0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2484</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23487.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2484"/>
    <dbReference type="EnsemblBacteria" id="SHH23487">
        <property type="protein sequence ID" value="SHH23487"/>
        <property type="gene ID" value="SAMN05444003_2484"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025226">
        <property type="entry name" value="DUF4170"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13773">
        <property type="entry name" value="DUF4170"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH23487.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="80" mass="8989" checksum="FA2D059D3A383A72" modified="2017-03-15" version="1">MTQRLHLVFGGELIDPTKNAFKDVDAIDIVGIFPNYEAAYNAWKGAAQRTVDNAHMRYFIAHLHRLRDEEAAASSTEELG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RMJ7</accession>
    <name>A0A1M5RMJ7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">50S ribosomal protein L11</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rplK</name>
        <name evidence="10" type="ORF">SAMN05444003_2673</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 7">Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Part of the ribosomal stalk of the 50S ribosomal subunit. Interacts with L10 and the large rRNA to form the base of the stalk. L10 forms an elongated spine to which L12 dimers bind in a sequential fashion forming a multimeric L10(L12)X complex.</text>
    </comment>
    <comment type="PTM">
        <text evidence="5 7">One or more lysine residues are methylated.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the universal ribosomal protein uL11 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH27532.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901851.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2673"/>
    <dbReference type="EnsemblBacteria" id="SHH27532">
        <property type="protein sequence ID" value="SHH27532"/>
        <property type="gene ID" value="SAMN05444003_2673"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070180">
        <property type="term" value="F:large ribosomal subunit rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00349">
        <property type="entry name" value="Ribosomal_L11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.250">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00736">
        <property type="entry name" value="Ribosomal_L11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000911">
        <property type="entry name" value="Ribosomal_L11/L12"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036796">
        <property type="entry name" value="Ribosomal_L11/L12_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006519">
        <property type="entry name" value="Ribosomal_L11_bac-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020783">
        <property type="entry name" value="Ribosomal_L11_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036769">
        <property type="entry name" value="Ribosomal_L11_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020784">
        <property type="entry name" value="Ribosomal_L11_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11661">
        <property type="entry name" value="PTHR11661"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00298">
        <property type="entry name" value="Ribosomal_L11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03946">
        <property type="entry name" value="Ribosomal_L11_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00649">
        <property type="entry name" value="RL11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46906">
        <property type="entry name" value="SSF46906"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54747">
        <property type="entry name" value="SSF54747"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01632">
        <property type="entry name" value="L11_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5 7" id="KW-0488">Methylation</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5 7" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="Ribosomal_L11_N" evidence="9">
        <location>
            <begin position="9"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="domain" description="Ribosomal_L11" evidence="8">
        <location>
            <begin position="72"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010537"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00736"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003978"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00298"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF03946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH27532.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="141" mass="14947" checksum="8854D4FDEFE30031" modified="2017-03-15" version="1">MAKKLAGTMKLQVPAGQANPSPPVGPALGQRGINIMEFCKAFNAKTQDLEPGAPCPTVITYYQDKSFSMDIKTPPASYFIKKAAKLKSGSQTPGKSVAGSITSKQVREIAEAKMKDLNANDIEGAMLIIMGSARSMGIEVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RMK9</accession>
    <name>A0A1M5RMK9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF374 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2668</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH27421.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901844.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2668"/>
    <dbReference type="EnsemblBacteria" id="SHH27421">
        <property type="protein sequence ID" value="SHH27421"/>
        <property type="gene ID" value="SAMN05444003_2668"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007172">
        <property type="entry name" value="DUF374"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04028">
        <property type="entry name" value="DUF374"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF374" evidence="1">
        <location>
            <begin position="78"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH27421.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="217" mass="24324" checksum="583D46406DE81AB1" modified="2017-03-15" version="1">MPSLRRRLEHSPAAAGALARLAGGYLWLCNRTIRWEVEGLEELKADLADGPVLLVMWHGRLLMAPYHWPLSDGQLTSLYARSPVGRVAGALHRQMGYTPMEMSDRSSNIAQSRAILKRVKEGASIGMTADGPTGPAFEVKDAPLEWARVMQRPVWCYSFETSGGRKLDSWDDMWLPKPFGSGRAVFRRWEAEVPRKVDAEALERLRSGMKGLLDSIY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RUM9</accession>
    <name>A0A1M5RUM9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized conserved protein, DUF1330 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2700</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH29890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901946.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2700"/>
    <dbReference type="EnsemblBacteria" id="SHH29890">
        <property type="protein sequence ID" value="SHH29890"/>
        <property type="gene ID" value="SAMN05444003_2700"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010753">
        <property type="entry name" value="DUF1330"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07045">
        <property type="entry name" value="DUF1330"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1330" evidence="1">
        <location>
            <begin position="3"/>
            <end position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH29890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="94" mass="10271" checksum="874716F9200FCB92" modified="2017-03-15" version="1">MAVYAVVQVDVTDPEAYGKYAELAGPAVTKYGGEFLARGGEVVVKEGTTRARCVLIRFDDMETAQAFYDGPEYQEALSHGLPASERDYKFVEGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RVQ0</accession>
    <name>A0A1M5RVQ0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2724</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30402.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901978.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH30402">
        <property type="protein sequence ID" value="SHH30402"/>
        <property type="gene ID" value="SAMN05444003_2724"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH30402.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="94" mass="10041" checksum="2AF93950834AFD6C" modified="2017-03-15" version="1">MELDGRLYIFIAAALLLLTGTYGLYDDIMEENAGPERVITRAAAAAECDQNAVEVGDMRLGCQTNTGNDVRVRRIETSSSSVLGGGAKFVSANR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RYR1</accession>
    <name>A0A1M5RYR1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">ATP synthase subunit c</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">ATP synthase F(0) sector subunit c</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">F-type ATPase subunit c</fullName>
            <shortName evidence="10">F-ATPase subunit c</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">Lipid-binding protein</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">atpE</name>
        <name evidence="12" type="ORF">SAMN05444003_2762</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.</text>
    </comment>
    <comment type="function">
        <text evidence="10">Key component of the F(0) channel; it plays a direct role in translocation across the membrane. A homomeric c-ring of between 10-14 subunits forms the central stalk rotor element with the F(1) delta and epsilon subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cell membrane</location>
            <topology evidence="10">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 10">Belongs to the ATPase C chain family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31314.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902038.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2762"/>
    <dbReference type="EnsemblBacteria" id="SHH31314">
        <property type="protein sequence ID" value="SHH31314"/>
        <property type="gene ID" value="SAMN05444003_2762"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045263">
        <property type="term" value="C:proton-transporting ATP synthase complex, coupling factor F(o)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008289">
        <property type="term" value="F:lipid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01396">
        <property type="entry name" value="ATP_synth_c_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000454">
        <property type="entry name" value="ATP_synth_F0_csu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038662">
        <property type="entry name" value="ATP_synth_F0_csu_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002379">
        <property type="entry name" value="ATPase_proteolipid_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035921">
        <property type="entry name" value="F/V-ATP_Csub_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00137">
        <property type="entry name" value="ATP-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00124">
        <property type="entry name" value="ATPASEC"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81333">
        <property type="entry name" value="SSF81333"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3 10" id="KW-0138">CF(0)</keyword>
    <keyword evidence="5 10" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="7 10" id="KW-0406">Ion transport</keyword>
    <keyword evidence="8 10" id="KW-0446">Lipid-binding</keyword>
    <keyword evidence="9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="10" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="6"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="49"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-synt_C" evidence="11">
        <location>
            <begin position="8"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="site" description="Reversibly protonated during proton transport" evidence="10">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022547"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01396"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHH31314.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="74" mass="7149" checksum="F6CBE723812EF133" modified="2017-03-15" version="1">MEGQLAHIGAGLAAIGSGAAAIGVGTVAGNYLAGALRNPSAAASQTATLFIGLAFAEALGIFAFLVSLLLMFAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S371</accession>
    <name>A0A1M5S371_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">CoA_binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2829</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32880.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902137.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2829"/>
    <dbReference type="EnsemblBacteria" id="SHH32880">
        <property type="protein sequence ID" value="SHH32880"/>
        <property type="gene ID" value="SAMN05444003_2829"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003781">
        <property type="entry name" value="CoA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13380">
        <property type="entry name" value="CoA_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00881">
        <property type="entry name" value="CoA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CoA_binding" evidence="1">
        <location>
            <begin position="21"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH32880.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="154" mass="17620" checksum="2806D0C9E9487E65" modified="2017-03-15" version="1">MPEADIDRLYDYDPHYLADILKSVKTIAMVGASADKTKFSYGVLRQLSEIGYDVLPVNPNPNLHEIRGLKVYHSLDEIEKPVDMVDVFRPKEELYAITEKAIEIDAKVLWGQIGVYDDEAAKLAEDAGLKVVMNRCPKIELFRPFWKPRLDLEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S4M8</accession>
    <name>A0A1M5S4M8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Xanthine dehydrogenase accessory factor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2845</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33248.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902164.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2845"/>
    <dbReference type="EnsemblBacteria" id="SHH33248">
        <property type="protein sequence ID" value="SHH33248"/>
        <property type="gene ID" value="SAMN05444003_2845"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003777">
        <property type="entry name" value="XdhC_CoxI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027051">
        <property type="entry name" value="XdhC_Rossmann_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13478">
        <property type="entry name" value="XdhC_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02625">
        <property type="entry name" value="XdhC_CoxI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="XdhC_CoxI" evidence="1">
        <location>
            <begin position="19"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="domain" description="XdhC_C" evidence="2">
        <location>
            <begin position="131"/>
            <end position="247"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02625"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH33248.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="259" mass="26953" checksum="2A2691DD64783740" modified="2017-03-15" version="1">MSPAEVMDSEFAEAAQTLRDNDEPFAFATIVRTAGATAAKPGAKALLAADGTILHGWLGGGCTRGAVRKAALESLKDGTPQLVSVAPEDLLEERGVASGDTVEGTKFARNGCPSRGTVDIFIEPCLPMPELVVLGASPVAKALSQLAPQFHWSISAGLGDENVTRRRRFVVIATQGQGDIDALQSALSEPCDYVAFVGSSKKFASLSERLHGLGVSQEATAKVDAPAGLSIGAVTPEEIALSILGQLVRVRRINTGETT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S632</accession>
    <name>A0A1M5S632_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Succinate dehydrogenase/fumarate reductase, flavoprotein subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2874</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33964.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2874"/>
    <dbReference type="EnsemblBacteria" id="SHH33964">
        <property type="protein sequence ID" value="SHH33964"/>
        <property type="gene ID" value="SAMN05444003_2874"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008152">
        <property type="term" value="P:metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.700.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003953">
        <property type="entry name" value="FAD-binding_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030664">
        <property type="entry name" value="SdhA/FrdA/AprA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011280">
        <property type="entry name" value="Succ_DH/Fum_Rdt_flav_su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027477">
        <property type="entry name" value="Succ_DH/fumarate_Rdtase_cat_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11632">
        <property type="entry name" value="PTHR11632"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11632:SF53">
        <property type="entry name" value="PTHR11632:SF53"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00890">
        <property type="entry name" value="FAD_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD_binding_2" evidence="5">
        <location>
            <begin position="45"/>
            <end position="473"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="78"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="78"/>
            <end position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00890"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH33964.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="684" mass="74271" checksum="2CC312C6B70FDB38" modified="2017-03-15" version="1">MALALSQDILDALTDVQMPRLEAEPGALETLTVGEHTMPVYRAQAVVIGSGAAGLRAAVEMKRRGLDVTIISQSAWGGTSACSGSDKQTLHTANTKDQGDDFQDMAKSIRAGGAMDEDTAYIEAVGSIRAMASLQYLGLPLPQDDLGGTLRYQTDHDEVGRATSCGPRTSRLMVKVLAEEAIRLGIPFYNHTTAIKVLESDGHVCGVLAMRPKQMDDANPLGLAVYTCDKLVIAAGGPGELYRDSVFPNGCFGTLGFALEAGLELTNITESQFGIGTRREGFPWNLSGTYVQVIPHIYSVDEEGVEHHFLADYYRTTQEMASNVFRKGYQWPFHASRMLNFQSSLVDLAIFREGEKGRKVYMDFNRNPLPIPGDLDFGVDRLDDDVSTYLKTAGADHDLPIDRLKHMNPLAIELYKRYKVDITKDPLEFAVNNQHMNGGIAVDTWGRTNVPGIYAVGEASGTHGATRPGGSALNAGQVFGTRVAEHAAANTAMVSNETDMAKAVLHAVEDFNSAASEDVALSIKSVRDEVQARMSDHAGILCTPTAVSTALGDARKLNAKIRKYGIATSRKNETVRAVQWQQMALASEAVLTALDEYISAGGGSRGARAICDPNGDSLPESVRGLLHDLRFRAERDEDKGEQITVRLTGDSFVIGRRANRPFDESAKSFFERDWPAWLTGAIFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SFY7</accession>
    <name>A0A1M5SFY7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Arsenical resistance protein ArsH</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2947</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37401.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902362.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2947"/>
    <dbReference type="EnsemblBacteria" id="SHH37401">
        <property type="protein sequence ID" value="SHH37401"/>
        <property type="gene ID" value="SAMN05444003_2947"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014063">
        <property type="entry name" value="Arsenate-R_ArsH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005025">
        <property type="entry name" value="FMN_Rdtase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43590">
        <property type="entry name" value="PTHR43590"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03358">
        <property type="entry name" value="FMN_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02690">
        <property type="entry name" value="resist_ArsH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FMN_red" evidence="1">
        <location>
            <begin position="39"/>
            <end position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH37401.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="243" mass="27294" checksum="0464BE1033911656" modified="2017-03-15" version="1">MKQPNSLIDTSDLPNIVEGQLKPINGTILAPDNDPGHPPRILLLYGSLREQSYSRIAAEEGARVLRALGCETKFFNPSGLPLPGDADETQPKVQELRDLVMWSEGMVWCSPERHGTMTAVMKAQIDWIPLAPIGGIRPTQGKTLAIMQVCGGSQSFNTVNELRILGRWMRLLTIPNQSSVPKAWLEFENGRMKAGPLYNRIVDVMEELARFTWLTRARKDELVDRYSERVESAEDVRKRVGQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SGZ9</accession>
    <name>A0A1M5SGZ9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 18">Diacylglycerol kinase</fullName>
            <ecNumber evidence="5 18">2.7.1.107</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="19" type="ORF">SAMN05444003_2954</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="19 20" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="19 20">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="18">Catalyzes the ATP-dependent phosphorylation of sn-l,2-diacylglycerol (DAG) to phosphatidic acid. Involved in the recycling of diacylglycerol produced as a by-product during membrane-derived oligosaccharide (MDO) biosynthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="18">
            <text>a 1,2-diacyl-sn-glycerol + ATP = a 1,2-diacyl-sn-glycero-3-phosphate + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:10272"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17815"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58608"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.107"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3 18">Cell inner membrane</location>
            <topology evidence="3 18">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 18">Belongs to the bacterial diacylglycerol kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="18">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.107" evidence="5 18"/>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37548.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902372.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2954"/>
    <dbReference type="EnsemblBacteria" id="SHH37548">
        <property type="protein sequence ID" value="SHH37548"/>
        <property type="gene ID" value="SAMN05444003_2954"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004143">
        <property type="term" value="F:diacylglycerol kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006654">
        <property type="term" value="P:phosphatidic acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd14264">
        <property type="entry name" value="DAGK_IM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.3610">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000829">
        <property type="entry name" value="DAGK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033718">
        <property type="entry name" value="DAGK_prok"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036945">
        <property type="entry name" value="DAGK_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34299">
        <property type="entry name" value="PTHR34299"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01219">
        <property type="entry name" value="DAGK_prokar"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01069">
        <property type="entry name" value="DAGK_PROKAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="14 18" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8 18" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="13 18 19" id="KW-0418">Kinase</keyword>
    <keyword evidence="18" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="15" id="KW-0460">Magnesium</keyword>
    <keyword evidence="17 18" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12 18" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="18" id="KW-1208">Phospholipid metabolism</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 18" id="KW-0808">Transferase</keyword>
    <keyword evidence="10 18" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="16 18" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="18">
        <location>
            <begin position="33"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="18">
        <location>
            <begin position="98"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00017575"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="RuleBase" id="RU363065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="SHH37548.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="123" mass="13136" checksum="F8551F688E06F7D3" modified="2017-03-15" version="1">MIGFLSKQGRRVVQRAIWSWDGFIHVFKTEGSLAQWLVANAVFAVLAFALPLTAGERGFLLMGGIMVLAMECVNTAIERVVDDIGTERRDLAKQAKDCGSAAVAVTAIGVGIGWVCVIVGLLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SNA9</accession>
    <name>A0A1M5SNA9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DNA gyrase inhibitor YacG</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">yacG</name>
        <name evidence="2" type="ORF">SAMN05444003_3041</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="1">Binds 1 zinc ion.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Interacts with GyrB.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the DNA gyrase inhibitor YacG family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH39443.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902491.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3041"/>
    <dbReference type="EnsemblBacteria" id="SHH39443">
        <property type="protein sequence ID" value="SHH39443"/>
        <property type="gene ID" value="SAMN05444003_3041"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008657">
        <property type="term" value="F:DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.50.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00649">
        <property type="entry name" value="DNA_gyrase_inhibitor_YacG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005584">
        <property type="entry name" value="DNA_gyrase_inhibitor_YacG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013088">
        <property type="entry name" value="Znf_NHR/GATA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03884">
        <property type="entry name" value="YacG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <feature type="binding site" evidence="1">
        <location>
            <position position="3"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="6"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="18"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="22"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH39443.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="60" mass="6822" checksum="CB916904C89322DB" modified="2017-03-15" version="1">MACPMCENDTDPKYRPFCSKRCADLDLGKWLTGSYAIPFAVEEDDEDLAQALEEEARKPH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SRB3</accession>
    <name>A0A1M5SRB3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3059</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41062.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902589.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3059"/>
    <dbReference type="EnsemblBacteria" id="SHH41062">
        <property type="protein sequence ID" value="SHH41062"/>
        <property type="gene ID" value="SAMN05444003_3059"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003871">
        <property type="term" value="F:5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009086">
        <property type="term" value="P:methionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd03311">
        <property type="entry name" value="CIMS_C_terminal_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.210">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002629">
        <property type="entry name" value="Met_Synth_C/arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038071">
        <property type="entry name" value="UROD/MetE-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01717">
        <property type="entry name" value="Meth_synt_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51726">
        <property type="entry name" value="SSF51726"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Meth_synt_2" evidence="1">
        <location>
            <begin position="5"/>
            <end position="347"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH41062.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="374" mass="40976" checksum="C5ED4975E74DF506" modified="2017-03-15" version="1">MTKIQTTHVGSLPRTQEVVDFIFARENGTEYDQSAFDNCMAAAVSDTVKKQIDAGVDIVSDGETSKISYATYVKDRYTGFDGNSPRNAPADLKKFPSFLKRLADDGGTPQYARPMCVGDVKSKGQGELEKDIANLKAAMTEHGVERGFMNAASPGVISLFLQNDFYSTREEYLAALADAMKEEYETIVASGLDLQLDCPDLALSRHMLFNDLSDEEFLKIAGSHVEALNHALADVPAEKVRIHICWGNYEGPHVCDIPMAKMFDTLMSAKARYVLFETSNPRHGHEWTVFRDRKDEIPADKVLVPGVVDTTTNFVEHPELVAQRTQRFVDIVGAERVIAGSDCGFGTFAGFGAVDPEIAYAKLGALSEGAALVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SS36</accession>
    <name>A0A1M5SS36_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">CxxC motif-containing protein, DUF1111 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_3072</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41316.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902606.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3072"/>
    <dbReference type="EnsemblBacteria" id="SHH41316">
        <property type="protein sequence ID" value="SHH41316"/>
        <property type="gene ID" value="SAMN05444003_3072"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010538">
        <property type="entry name" value="DHOR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06537">
        <property type="entry name" value="DHOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF028099">
        <property type="entry name" value="DUF1111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0349">Heme</keyword>
    <keyword evidence="3 4" id="KW-0408">Iron</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cytochrome c" evidence="5">
        <location>
            <begin position="374"/>
            <end position="506"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH41316.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="506" mass="56001" checksum="671A13337CD7F36F" modified="2017-03-15" version="1">MLRTFLTVFVAGILPFEAVSQDISSDLHLNVIPRTAEERTRIANVTSPTTDFNSAESFEARPAGATTVRARRTADAFSISSDNLPFEDELDFKVGNGLFRKLWTSSPSSTLASDGLGPLFNARSCQRCHIKDGRGHPPANTDDNAISMLVRVSIPGTYEDAIAEIEDYIATKPEPTYGGQLQDFTVAGQPAEFRLQIEYEDVPVELSGGETFVLQRPIYGYENQGYGEFHPDTMFSPRVAQQMIGLGLLEAIPAVDILANADPDDVDGDGISGRPNIIWSHEYETAMLGRFGHKAGQPTLPEQNAAAFSGDVGISSPLFPQPYGDCTVAQPDCQNAPHGDGDARVFEIDQEGMDLVTFYTRNLAPPARRDIEDVEVLRGKEMFYSANCTSCHTPKFVTHRLEDRPEHSFQLIWPYSDMLLHDMGEGLADNRPEARATGREWRTPPLWGIGLTEQVSGHTRFLHDGRARNLMEAILWHGGEAEESKQVVVDMPKEDREALIRFLESL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TAF8</accession>
    <name>A0A1M5TAF8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Predicted dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3298</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000009">
        <property type="protein sequence ID" value="SHH47600.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072903006.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000009.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3298"/>
    <dbReference type="EnsemblBacteria" id="SHH47600">
        <property type="protein sequence ID" value="SHH47600"/>
        <property type="gene ID" value="SAMN05444003_3298"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004104">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000683">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01408">
        <property type="entry name" value="GFO_IDH_MocA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02894">
        <property type="entry name" value="GFO_IDH_MocA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GFO_IDH_MocA" evidence="1">
        <location>
            <begin position="8"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="domain" description="GFO_IDH_MocA_C" evidence="2">
        <location>
            <begin position="138"/>
            <end position="367"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH47600.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="383" mass="41983" checksum="8F2245050C2B0C05" modified="2017-03-15" version="1">MNDLAKSFRVGLIGTGRISDIYLKTLSKSDSVNVVACGSLNMDESRVKAIQYDIPIAKPPEDILADPEIDAILNLTIPAAHAEVSLAALEAGKHVYSEKPLVGSLADGRKVLDRAVELGLSVGNAPDTFLGGRWQTVRKLLDAGTIGRPTGAAAFVGTHGTERHHPNPDFYYQTGGGPMLDLGPYYLSAMVFFLGPIARVAGLSNRAFDKRMIENGPRHGQMMPVEVDTHVQGMLEFESGVIGSITMSFDVWDSEMPRFEIYGEDGVICIPDPDPVHGANIFQGEVWYRTRDTSRWSHQPRPRGREAWQVAMNTHGLNEDCRGIGLIEMADAIRNGRTPRCSGELAYHVLEVMYGILDSPKSGRFVDIESRPPVPEILPETYP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TDF9</accession>
    <name>A0A1M5TDF9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3329</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000014">
        <property type="protein sequence ID" value="SHH48744.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH48744">
        <property type="protein sequence ID" value="SHH48744"/>
        <property type="gene ID" value="SAMN05444003_3329"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004803">
        <property type="term" value="F:transposase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002514">
        <property type="entry name" value="Transposase_8"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01527">
        <property type="entry name" value="HTH_Tnp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="47"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH48744.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="86" mass="10175" checksum="1CF7710775B8D625" modified="2017-03-15" version="1" fragment="single">KPEEIVTKLRQVEVLCGQGMPRIDAIRQVQITEQTFYRWRKQYGGMRTDQLKELKRLQKENDRLRRAVSDLTLDKLILAEAARGNY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L2V5</accession>
    <name>A0A1M5L2V5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Esterase/lipase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0067</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59326.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG59326">
        <property type="protein sequence ID" value="SHG59326"/>
        <property type="gene ID" value="SAMN05444003_0067"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022742">
        <property type="entry name" value="Hydrolase_4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12146">
        <property type="entry name" value="Hydrolase_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hydrolase_4" evidence="1">
        <location>
            <begin position="44"/>
            <end position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG59326.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="287" mass="31136" checksum="172D4E32D56C08BD" modified="2017-03-15" version="1">MPLVELAGIGARLAQREATVPALRPGCEKRIQWAAKEDRQTPYSVVFIHGFSASSGELSPLPQIIAKALRANLFFARLEGHGQDGAAFGAATFDGWMADTKEAFEIGQAIGERVIVIACSTGCTLTTLALAAGQKAAGVVFVSPNFGLRSVLGQFVLDLPFIKHYGHLLAGKERSFPIHNEGHAQYWTTTYPISAVYPMGEAVRRARKVGYASLKTPAFFALNEKDQVISAKRATKVIRAWGGPVTHLRLNQGPDDDEMGHVMAGDVFSPKQTEPLAEHILDWVNKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L3C8</accession>
    <name>A0A1M5L3C8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0076</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59496.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898418.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG59496">
        <property type="protein sequence ID" value="SHG59496"/>
        <property type="gene ID" value="SAMN05444003_0076"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG59496.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="80" mass="9286" checksum="E1BDF8BD2D7B8C75" modified="2017-03-15" version="1">MDELWTYVSAYYQCTALAEAHVLTQTERFACNETYQQVKRLISGAEVTQPLTREQNVQAYLLFKDWEIENAGLIKLLGLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L5X1</accession>
    <name>A0A1M5L5X1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0121</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60417.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0121"/>
    <dbReference type="EnsemblBacteria" id="SHG60417">
        <property type="protein sequence ID" value="SHG60417"/>
        <property type="gene ID" value="SAMN05444003_0121"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018490">
        <property type="entry name" value="cNMP-bd-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51206">
        <property type="entry name" value="SSF51206"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG60417.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="194" mass="21367" checksum="D2B4286713CEB911" modified="2017-03-15" version="1">MDLLTFLSSSLSALDKDIAREFAAAWSVQHVVKGCCLAAQGEPDPMEHIILDGRAASQISDLDGRAVCVGFHAGPCVVTPNIVRTRNGTSLVSIDAVTDVLVAQMDNRALIELMLVSEPIREWANGIMQQEQVRKADREWCLAALGGADRLAWFRRAFPRHEDFFGHYLIASYLGMTPVTLSRLRGAERNTTLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L8G6</accession>
    <name>A0A1M5L8G6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0166</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61414.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898531.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0166"/>
    <dbReference type="EnsemblBacteria" id="SHG61414">
        <property type="protein sequence ID" value="SHG61414"/>
        <property type="gene ID" value="SAMN05444003_0166"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG61414.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="119" mass="13436" checksum="7285C6F143E7C121" modified="2017-03-15" version="1">MRGVLYVFAALAVIGLGFWAYQENYKTQQAIKDTRLLHAKIGAAHERINILRAEWAYLNRPDRLRDLAELNFDRLGLLPLMPDAFGDVKDIIEPLPEILPITNPIDVNSIGPSNDEDPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LD03</accession>
    <name>A0A1M5LD03_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Amino acid/amide ABC transporter membrane protein 2, HAAT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0223</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62856.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898625.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0223"/>
    <dbReference type="EnsemblBacteria" id="SHG62856">
        <property type="protein sequence ID" value="SHG62856"/>
        <property type="gene ID" value="SAMN05444003_0223"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015658">
        <property type="term" value="F:branched-chain amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06581">
        <property type="entry name" value="TM_PBP1_LivM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043428">
        <property type="entry name" value="LivM-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30482">
        <property type="entry name" value="PTHR30482"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="45"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="70"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="94"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="198"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="245"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="285"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="352"/>
            <end position="373"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG62856.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="397" mass="43232" checksum="54DFE2AA50ED3368" modified="2017-03-15" version="1">MLGLNKKDFGLLCLVTFMAAAAPILLNPFPETSTLSFLNAGYPALMQLFAIFGIVLIGFNILFGLTGYLSFGHAAFIGIGSYTAMWMYKLLNFNVIISIPMAMFVTGIFAVLIGWICLRRTGIYFSILTLAFAEMAYRLSYSVLTPITGGETNLSPDPINDPMILKGENGLTVPHLFGFDLNAKYVAEVGNWSFTFEAGYYLCALVLVLSFYLSIRVFRSPFGMMLRAIKANNHRMGYTGLNPKPYMLAAFVISGLYAGLGGGLLVAMDAQAGAERMFWTESGTIVIMSILGGAGTLLGPILGAGAIKYMEKILSSISESQLHSWLSILPDGLEDFLVYILANFFVGHAWHLTLGLVFMLVVIFVPGGLVELGQRVASRFRRKGSEDALVSKETPAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LDS9</accession>
    <name>A0A1M5LDS9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Precorrin-2 dehydrogenase</fullName>
            <ecNumber evidence="3">1.3.1.76</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_0240</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>NAD(+) + precorrin-2 = 2 H(+) + NADH + sirohydrochlorin</text>
            <dbReference type="Rhea" id="RHEA:15613"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:58351"/>
            <dbReference type="ChEBI" id="CHEBI:58827"/>
            <dbReference type="EC" id="1.3.1.76"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Porphyrin-containing compound metabolism; siroheme biosynthesis; sirohydrochlorin from precorrin-2: step 1/1.</text>
    </comment>
    <dbReference type="EC" id="1.3.1.76" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63264.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898654.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0240"/>
    <dbReference type="EnsemblBacteria" id="SHG63264">
        <property type="protein sequence ID" value="SHG63264"/>
        <property type="gene ID" value="SAMN05444003_0240"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00262">
        <property type="reaction ID" value="UER00222"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004325">
        <property type="term" value="F:ferrochelatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043115">
        <property type="term" value="F:precorrin-2 dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019354">
        <property type="term" value="P:siroheme biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.210">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1010.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000878">
        <property type="entry name" value="4pyrrol_Mease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035996">
        <property type="entry name" value="4pyrrol_Methylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014777">
        <property type="entry name" value="4pyrrole_Mease_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028161">
        <property type="entry name" value="Met8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037115">
        <property type="entry name" value="Sirohaem_synt_dimer_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019478">
        <property type="entry name" value="Sirohaem_synthase_dimer_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006367">
        <property type="entry name" value="Sirohaem_synthase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35330">
        <property type="entry name" value="PTHR35330"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10414">
        <property type="entry name" value="CysG_dimeriser"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00590">
        <property type="entry name" value="TP_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53790">
        <property type="entry name" value="SSF53790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01470">
        <property type="entry name" value="cysG_Nterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="5" id="KW-0520">NAD</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="CysG_dimeriser" evidence="7">
        <location>
            <begin position="150"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="domain" description="TP_methylase" evidence="6">
        <location>
            <begin position="220"/>
            <end position="331"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012400"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF10414"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG63264.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="351" mass="38088" checksum="AB3AFC17871CDCB5" modified="2017-03-15" version="1">MKTFPMFLQMAGRQVVIAGGGEQAAQKTRLILKTEAKITLLAPELDAELSDLVQSGRVQHDAGPIAPSSFENTALTFIATGCPGADMALHALAKEGGATVNVVDQPTLCDAITPSIVDRDPVVVAIGTEGTSPVLARQIKTRIEETLEPRLGELAALAGRLRASAAMRLSPRKRRDLWRWVFNETPRRLFASGAERQATRMIKDAIQTGTFDAGNGGALCFVHSGPGAKDLMTLRGVQRLQEADVIYYDHSVDPDILELARRDAERVFFGNRSGCQIWPRDKTTQILVSAVRRGDKVVRLVGQAANGENETTEELELLRTMGIATDVVPGVMQSVDRQKISSEHENNVNVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LEG7</accession>
    <name>A0A1M5LEG7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">Biotin carboxyl carrier protein of acetyl-CoA carboxylase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_0220</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 5">This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 5">Lipid metabolism; fatty acid biosynthesis.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62763.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898618.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0220"/>
    <dbReference type="EnsemblBacteria" id="SHG62763">
        <property type="protein sequence ID" value="SHG62763"/>
        <property type="gene ID" value="SAMN05444003_0220"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00094"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009317">
        <property type="term" value="C:acetyl-CoA carboxylase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003989">
        <property type="term" value="F:acetyl-CoA carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001249">
        <property type="entry name" value="AcCoA_biotinCC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001882">
        <property type="entry name" value="Biotin_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000089">
        <property type="entry name" value="Biotin_lipoyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011053">
        <property type="entry name" value="Single_hybrid_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00364">
        <property type="entry name" value="Biotin_lipoyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01071">
        <property type="entry name" value="ACOABIOTINCC"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51230">
        <property type="entry name" value="SSF51230"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00531">
        <property type="entry name" value="BCCP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00188">
        <property type="entry name" value="BIOTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50968">
        <property type="entry name" value="BIOTINYL_LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0092">Biotin</keyword>
    <keyword evidence="5" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="5" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="5" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="5" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lipoyl-binding" evidence="7">
        <location>
            <begin position="93"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="68"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003761"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00017562"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023267"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU364072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG62763.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="169" mass="17270" checksum="AF3C46EE1348C3EA" modified="2017-03-15" version="1">MGNKSTRDSDVSFIQALAEVLRENDLTEVQVKREYGEADSLNVRVSRQQQQTVVQAAAPAAVAAPVAAAPAAETPAAAPAPAAGASDDPASHPGAVTSPMVGTVYMSPEPGAAAFISAGATVSEGDTLLIIEAMKTMNHIPAPRSGTIKRILVEDASPVEFGAPLVIIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LGL0</accession>
    <name>A0A1M5LGL0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Protein-L-isoaspartate O-methyltransferase</fullName>
            <ecNumber evidence="2">2.1.1.77</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">L-isoaspartyl protein carboxyl methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="2">Protein L-isoaspartyl methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="2">Protein-beta-aspartate methyltransferase</fullName>
            <shortName evidence="2">PIMT</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">pcm</name>
        <name evidence="3" type="ORF">SAMN05444003_0279</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>[protein]-L-isoaspartate + S-adenosyl-L-methionine = [protein]-L-isoaspartate alpha-methyl ester + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:12705"/>
            <dbReference type="Rhea" id="RHEA-COMP:12143"/>
            <dbReference type="Rhea" id="RHEA-COMP:12144"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:90596"/>
            <dbReference type="ChEBI" id="CHEBI:90598"/>
            <dbReference type="EC" id="2.1.1.77"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the methyltransferase superfamily. L-isoaspartyl/D-aspartyl protein methyltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.77" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64201.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0279"/>
    <dbReference type="EnsemblBacteria" id="SHG64201">
        <property type="protein sequence ID" value="SHG64201"/>
        <property type="gene ID" value="SAMN05444003_0279"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004719">
        <property type="term" value="F:protein-L-isoaspartate (D-aspartate) O-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030091">
        <property type="term" value="P:protein repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00090">
        <property type="entry name" value="PIMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000682">
        <property type="entry name" value="PCMT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11579">
        <property type="entry name" value="PTHR11579"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00080">
        <property type="entry name" value="pimt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01279">
        <property type="entry name" value="PCMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 3" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 3" id="KW-0808">Transferase</keyword>
    <feature type="active site" evidence="2">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG64201.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="213" mass="23257" checksum="1B8BA97F0C5BFB72" modified="2017-03-15" version="1">MTFDAETKMQFLFALRSKGVTDARVLSAVEAVDRAAFMQGLFSERAYEDTPLPISCGQTISQPSIVGIMTQALAVTPRDKVLEVGTGSGYQAAILSQLARRVYTVDRYRRLVQEAQRIFDSLGITNITAMTADGSFGLPEQAPFDRILLTAAAEDPPGPLLAQLRVGGIMVLPVGQSDTVQSLIKVTRLEQGYDYEELRNVRFVPLIEGLGKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LIN1</accession>
    <name>A0A1M5LIN1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">5'-nucleotidase SurE</fullName>
            <ecNumber evidence="5">3.1.3.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Nucleoside 5'-monophosphate phosphohydrolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">surE</name>
        <name evidence="8" type="ORF">SAMN05444003_0280</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>a ribonucleoside 5'-phosphate + H2O = a ribonucleoside + phosphate</text>
            <dbReference type="Rhea" id="RHEA:12484"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:18254"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58043"/>
            <dbReference type="EC" id="3.1.3.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
        <text evidence="5">Binds 1 divalent metal cation per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the SurE nucleotidase family.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.5" evidence="5"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0280"/>
    <dbReference type="EnsemblBacteria" id="SHG64223">
        <property type="protein sequence ID" value="SHG64223"/>
        <property type="gene ID" value="SAMN05444003_0280"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106411">
        <property type="term" value="F:XMP 5'-nucleosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1210.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00060">
        <property type="entry name" value="SurE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030048">
        <property type="entry name" value="SurE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002828">
        <property type="entry name" value="SurE-like_Pase/nucleotidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036523">
        <property type="entry name" value="SurE-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30457">
        <property type="entry name" value="PTHR30457"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01975">
        <property type="entry name" value="SurE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64167">
        <property type="entry name" value="SSF64167"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00087">
        <property type="entry name" value="surE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SurE" evidence="7">
        <location>
            <begin position="53"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="10"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="58"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="59"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="93"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="146"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00060"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG64223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="311" mass="33344" checksum="145B2161FBD9E77B" modified="2017-03-15" version="1">MAGPKSRAAQPHNLTRSESTTPQRIEVTPHGLAAPSRALYHKVTTAKGKHMRILITNDDGIDAPGLKTLEAIAKTVAGETGEVWTVAPAFEQSGVGHCINYTRPTMTAQYGTHRFAVEGSPADCVLAGIHHMMKDAPPDLILSGVNRGNNAGENTLYSGTVGACIEAALQGYKSIALSQYYGSDNRDLDDPFEAAATHGAELVQQLLDNGGWDGADYKLFFNVNFPPTSADTVKGIRAVSQGFRQDVTFGVTSQTSPSGRNYLWVKGGPQNQPTLPGTDVHANLNGYISVTPMRADLTDYSRLATLQDIFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LJY3</accession>
    <name>A0A1M5LJY3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sugar (Pentulose or hexulose) kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0330</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898774.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0330"/>
    <dbReference type="EnsemblBacteria" id="SHG65220">
        <property type="protein sequence ID" value="SHG65220"/>
        <property type="gene ID" value="SAMN05444003_0330"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016773">
        <property type="term" value="F:phosphotransferase activity, alcohol group as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018484">
        <property type="entry name" value="Carb_kinase_FGGY_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00370">
        <property type="entry name" value="FGGY_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="FGGY_N" evidence="1">
        <location>
            <begin position="7"/>
            <end position="241"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG65220.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="460" mass="49030" checksum="ECE71ACADC3F02EC" modified="2017-03-15" version="1">MTTGHIAVIDIGKTNAKLALVRQSDLLEIKVVTRPNTVLPGPPYPHFDVEGLWHFLLEGLASFHAEFGIEAITITTHGAAGALIATDGSLAAPILDYEHTGPDECAEVYDAIRPPFSETGSPRLALGLNLGAQIHWQFTRDPKLKDRVCHIITYPQFWAHRLTGVYATDVTSLGCHTDLWNPYQSEFSSLPAKLNIADKIAQPRKPGDVVGHVTAEVAQNTGLPANTAVHCGIHDSNASLLSHLVAQRPPFSVVSTGTWVIAMAVGGKPVTLDPACDTLVNVNAFGHAVPSARFMGGREHDLALGGAVVDADARDMLEVLKNGSMLLPAVVPETGPFASSQAVWVGKEPKLGSPQRSAAVGFYLALVTSHCLDLIGHDGSVIVEGPFARNKAYLDMLRVASQSPIIPIASATGTSRGAALLVSPDGSSRHQMPSIPVPEKQMREAYSLYAAEWNGRRSKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LLE6</accession>
    <name>A0A1M5LLE6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Xaa-Pro aminopeptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0361</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898824.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0361"/>
    <dbReference type="EnsemblBacteria" id="SHG65867">
        <property type="protein sequence ID" value="SHG65867"/>
        <property type="gene ID" value="SAMN05444003_0361"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004177">
        <property type="term" value="F:aminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029149">
        <property type="entry name" value="Creatin/AminoP/Spt16_NTD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036005">
        <property type="entry name" value="Creatinase/aminopeptidase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000587">
        <property type="entry name" value="Creatinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000994">
        <property type="entry name" value="Pept_M24"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01321">
        <property type="entry name" value="Creatinase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00557">
        <property type="entry name" value="Peptidase_M24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53092">
        <property type="entry name" value="SSF53092"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55920">
        <property type="entry name" value="SSF55920"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Creatinase_N" evidence="2">
        <location>
            <begin position="13"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M24" evidence="1">
        <location>
            <begin position="158"/>
            <end position="365"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG65867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="381" mass="41821" checksum="1A6369D2948A0DF2" modified="2017-03-15" version="1">MTLHFDRPEYEMRQSRAKQALSERGLDALLMFAPESQFWICGYDTFGFAMFQCLVLTAEGELHLLTRMPDLRQAQVTSTLVNDQIHIWPEHEGANPARDLAALLSDLGVTGRIGFESDTAGLSDKNGQAIRAEISGLEDASGLIRTLRRDKSDAEVAMHRKAAALSDDALDAALAATKAGAFEGDILADMQGAVFRGGGDYAGNEFIIGSAERALLCRYFSGRRHLDATDQLTLEWSGVYARYHAAMMRTVLVGTPSDAHKRLHGLVEEALISCEAAIKPGQPMGDVYAAHADVFDKAGMSDARLQACGYGMGAVYTPIWIDFPMFYEGNPLLMRKNQVFFLHMILMDSDNGHAMTLGHSVLVTEDGCERLSRHDTTLLVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LME4</accession>
    <name>A0A1M5LME4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Amidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0344</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65503.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898794.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0344"/>
    <dbReference type="EnsemblBacteria" id="SHG65503">
        <property type="protein sequence ID" value="SHG65503"/>
        <property type="gene ID" value="SAMN05444003_0344"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1300.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000120">
        <property type="entry name" value="Amidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023631">
        <property type="entry name" value="Amidase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036928">
        <property type="entry name" value="AS_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11895">
        <property type="entry name" value="PTHR11895"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01425">
        <property type="entry name" value="Amidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75304">
        <property type="entry name" value="SSF75304"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidase" evidence="1">
        <location>
            <begin position="26"/>
            <end position="448"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG65503.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="458" mass="49347" checksum="F9B61AB84853969A" modified="2017-03-15" version="1">MDPILSNDATDLRRLMTTGALSAEDLMAATLDQIATVNGTANAIVSLRPEDALLDEARACDQTPKDRPLSGLPIAVKDLANVAGLPTSMGSPLFAGQVAHASDIMVQRMQDAGAIVIGKTNTPEFGLGSHTYNPVHGATQNAILPGMSAGGSSGGAAVALALNMVSIADGSDMMGSLRNPAGWNGVYGMRPTWGLVPSEPVGDTFLHQLSTNGPMARTPRDLALLLSVQSGADPRQPHGLPRFELEQNLEVDIKGARIGWLADWGGAYLMEEGVINHCEAELTRFGVAGAIIEPVAPPMSAAEIWEAWTTLRSWSVASGLETLYAQEKTRAHLKPAAIWEIERGRKLSAMEVQRASVIRSNWFKAAHELFQSYDALVLPSAQCWPFPIDWDWPKEIAGQSMDTYHRWMEVVIPVSLIGLPSVAVPLRPKPRPMGLQLFGPRGSDLKLLRLAQIWHQAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LMZ7</accession>
    <name>A0A1M5LMZ7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized conserved protein YibQ, putative polysaccharide deacetylase 2 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0379</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66280.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0379"/>
    <dbReference type="EnsemblBacteria" id="SHG66280">
        <property type="protein sequence ID" value="SHG66280"/>
        <property type="gene ID" value="SAMN05444003_0379"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd10936">
        <property type="entry name" value="CE4_DAC2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006837">
        <property type="entry name" value="Divergent_DAC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011330">
        <property type="entry name" value="Glyco_hydro/deAcase_b/a-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04748">
        <property type="entry name" value="Polysacc_deac_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88713">
        <property type="entry name" value="SSF88713"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="58"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="152"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="114"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="164"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="196"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="219"/>
            <end position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG66280.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="488" mass="50462" checksum="60C4AF1477FDFF40" modified="2017-03-15" version="1">MLKSLLSGAFLAVVLGAILLVSLSIVAPAPISNVPPETPQTEVPVVAEVPQTEAPEIEAAETDADASAPATVPAVDEPQIETASDVLDTTPLEVPDTASIEGGLVDPEEAEAPNVASSSETPVEPSEPLSSIQTPTLEQDVAVSTVPADPIVVPEPETEQVELTQPETTEDQEITEEPVIVETTDPEPPIIENDTAATEPQDQSIETAEPAPTTDDEPTVTAGVATTSSGLPTGTSGVRVNRIIGSQPEAEAETAAPAEIDPNAPALQRYAATFENPDGTPTVSLVLLDDPALASGADLIRLLPFPVTLVVDSGTPDAISRMTAFRDAGAEVALRAQFPAGALPSDVEVTLQSALEAVPEAVAFVDEGGTGLQSSRDVTNQTIEAMAEDGRGLVIFPKGLNSALRTAQSEGVPAAAIYRDLDGDGQDARVIRRFVDQAAFRARQDGSVILLARLRPETLDALVGWDAANNRGQVVLAPLSAVLAPAAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LPQ2</accession>
    <name>A0A1M5LPQ2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0414</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67084.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898901.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG67084">
        <property type="protein sequence ID" value="SHG67084"/>
        <property type="gene ID" value="SAMN05444003_0414"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025597">
        <property type="entry name" value="DUF4345"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14248">
        <property type="entry name" value="DUF4345"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="52"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="78"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="103"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG67084.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="132" mass="13639" checksum="C61BCCF56E188B32" modified="2017-03-15" version="1">MNLTFLQKGTLALSGLIAMGIGAAILFAPATFYGLSEVTLPDDVNLLNDIRAFGGGLVAAAVFISLGLVQRNLILPSLMAAAIVFAGFGLARIWAISVDGVPAATYVWVLIIELFVAALAAFAGIKTSNTQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LR56</accession>
    <name>A0A1M5LR56_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Cobalt-precorrin-5B C(1)-methyltransferase</fullName>
            <ecNumber evidence="5">2.1.1.195</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Cobalt-precorrin-6A synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">cbiD</name>
        <name evidence="6" type="ORF">SAMN05444003_0427</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>Co-precorrin-5B + S-adenosyl-L-methionine = Co-precorrin-6A + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:26285"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:60063"/>
            <dbReference type="ChEBI" id="CHEBI:60064"/>
            <dbReference type="EC" id="2.1.1.195"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="5">Cofactor biosynthesis; adenosylcobalamin biosynthesis; cob(II)yrinate a,c-diamide from sirohydrochlorin (anaerobic route): step 6/10.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the CbiD family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.195" evidence="5"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67390.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898913.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0427"/>
    <dbReference type="EnsemblBacteria" id="SHG67390">
        <property type="protein sequence ID" value="SHG67390"/>
        <property type="gene ID" value="SAMN05444003_0427"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00148">
        <property type="reaction ID" value="UER00227"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043780">
        <property type="term" value="F:cobalt-precorrin-5B C1-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046140">
        <property type="term" value="P:corrin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00787">
        <property type="entry name" value="CbiD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002748">
        <property type="entry name" value="CbiD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036074">
        <property type="entry name" value="CbiD_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35863">
        <property type="entry name" value="PTHR35863"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01888">
        <property type="entry name" value="CbiD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF026782">
        <property type="entry name" value="CbiD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111342">
        <property type="entry name" value="SSF111342"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 5" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="2 5 6" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 5 6" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG67390.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="348" mass="36424" checksum="FDF63A50CCFD08D1" modified="2017-03-15" version="1">MTETPKTELRKGWTTGACATAATKAALQQLWGGAFPKEVQITLPRGETPSFPLAWSQAGEGWAEVGITKDAGDDPDVTHGALMIARVRASNGGVIFKAGEGVGTVTKEGLPIPVGEPSINPVPRQMMTQVVEEQAEAFGQPADVEITVSIPDGAEIAKKTWNPRLGIEGGLSILGTTGIVRPFSCAAWIASIHRGIDVARADGLTHVAGCTGATSERIVQCLHGLPDHAMLDMGDFLGGMLKYMSKHPVERLTIGGGIGKITKAAQGAIDLHSSRSQVDFKALAALADMPKVAEANTALEASKIAPQLPELVATKASQEIRARFGGAMQNLDIVVIDRSGEILARAEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LRB3</accession>
    <name>A0A1M5LRB3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Phosphogluconate dehydratase</fullName>
            <ecNumber evidence="6">4.2.1.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">edd</name>
        <name evidence="7" type="ORF">SAMN05444003_0440</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the dehydration of 6-phospho-D-gluconate to 2-dehydro-3-deoxy-6-phospho-D-gluconate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>6-phospho-D-gluconate = 2-dehydro-3-deoxy-6-phospho-D-gluconate + H2O</text>
            <dbReference type="Rhea" id="RHEA:17277"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:57569"/>
            <dbReference type="ChEBI" id="CHEBI:58759"/>
            <dbReference type="EC" id="4.2.1.12"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="6">Binds 1 [4Fe-4S] cluster.</text>
    </comment>
    <comment type="pathway">
        <text evidence="6">Carbohydrate metabolism; Entner-Doudoroff pathway.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the IlvD/Edd family.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.12" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67692.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898938.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0440"/>
    <dbReference type="EnsemblBacteria" id="SHG67692">
        <property type="protein sequence ID" value="SHG67692"/>
        <property type="gene ID" value="SAMN05444003_0440"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00226"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004456">
        <property type="term" value="F:phosphogluconate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004792">
        <property type="term" value="F:thiosulfate sulfurtransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046177">
        <property type="term" value="P:D-gluconate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009255">
        <property type="term" value="P:Entner-Doudoroff pathway through 6-phosphogluconate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.30.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02094">
        <property type="entry name" value="Edd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004786">
        <property type="entry name" value="6-phosphgluc_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042096">
        <property type="entry name" value="Dihydro-acid_dehy_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000581">
        <property type="entry name" value="DiOHA_6PGluconate_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020558">
        <property type="entry name" value="DiOHA_6PGluconate_deHydtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037237">
        <property type="entry name" value="IlvD/EDD_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001307">
        <property type="entry name" value="Thiosulphate_STrfase_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43661:SF1">
        <property type="entry name" value="PTHR43661:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00920">
        <property type="entry name" value="ILVD_EDD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143975">
        <property type="entry name" value="SSF143975"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01196">
        <property type="entry name" value="edd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00886">
        <property type="entry name" value="ILVD_EDD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00887">
        <property type="entry name" value="ILVD_EDD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00380">
        <property type="entry name" value="RHODANESE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5 6" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="3 6" id="KW-0311">Gluconate utilization</keyword>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="4 6" id="KW-0456">Lyase</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="6">
        <location>
            <position position="155"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="222"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006486"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023064"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02094"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG67692.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="601" mass="63176" checksum="58EEA2AAE59C372B" modified="2017-03-15" version="1">MTLHTVISDVTDRIRKRSETSRRIYLDRMAAAAAEGPRRAHLTCGNQAHAYAAMGDDRAKLAAGQVPNIGIITAYNDMLSAHQPFETYPEVIRKAARAAGGTAQVAGGVPAMCDGVTQGQTGMELSLFSRDVIALSAGVGLSHNVFDSALYLGVCDKIVPGLIMAAVTFGYIPSIFIPAGPMVSGLPNDEKARVRQEFATGECGREELMAAEMASYHGPGTCTFYGTANTNQMLMEFMGMHLPGASFVNPNTPLREALTIAGTERALQITAQGNEFTPVSEVLDERAFVNGMVGLMATGGSTNLILHLPAMARAAGILLDLEDFDALSQTTPLLAKVYPNGLADVNHFHAAGGLGYMISELLNAGLLHDDVKTVAGDGLGLYTQEPKLIEGEIKYFDGTKETLNNKILRPVSEPFSATGGLTQLSGNIGRGVIKISAVAPERHVIEAPARVFHTQEAVKEAFKAGELTQDTVIVVRFQGPKSNGMPELHGLTPTLAVMQDRGLKVALVTDGRMSGASGKVPSAIHVSPEAADGGAIGKIQDGDLIRLDATNGALEVLGVDLDSRSVAEADLTGNGNGVGRELFEMFRQTVGPAATGAGVVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LWQ8</accession>
    <name>A0A1M5LWQ8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ATP-binding cassette, subfamily F, uup</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0518</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69436.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899042.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0518"/>
    <dbReference type="EnsemblBacteria" id="SHG69436">
        <property type="protein sequence ID" value="SHG69436"/>
        <property type="gene ID" value="SAMN05444003_0518"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.380">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032524">
        <property type="entry name" value="ABC_tran_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037118">
        <property type="entry name" value="Val-tRNA_synth_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16326">
        <property type="entry name" value="ABC_tran_CTD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="7"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="283"/>
            <end position="509"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="39"/>
            <end position="46"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="315"/>
            <end position="322"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG69436.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="609" mass="66628" checksum="F1A2366FE8A2B211" modified="2017-03-15" version="1">MARTPLLQLSDISLTFGGDPVFDDLSLVVQPGDRVALVGRNGSGKSTLMKVMAGLVEPDQGSVVAAPGVRVGYMEQDPTMAGFATLGDYAASGLDDGDAYRVEMVAEGLKFDPAGDVNTASGGERRRAALAKLMAEAPELMLLDEPTNHLDIEAIAWLEQELKQTRAGFVLISHDRAFLRELARATLWIDRGIVRRLEQGFDKFEPWRDKLWEEEDLQRHKLNRKIKAEARWAVEGISARRKRNMGRVRALQDLRAERAAQIKRQGTAAMSFESGQASGKKVIEAFGLTKSFDGKPIVKGFDLMVQRGDRVAFVGPNGVGKTSVIKMLLGQLEPDEGTVKHGTNLQIAVFDQTRAQLNPDESLWDNLVHDPEMGVSGKADQVMVCGTPKHVVGYLKEFLFDEAQARAPVRSLSGGEKARLLLARLMARESNVLVLDEPTNDLDMETLDLLQDILGDYDGTVLLVSHDRDFLDRVATTTVAMEGNGRAVTYAGGWSDYRSQRGDVAEAAVKANGAVKPKPAQAKEKPKAKQAGLSFTEKHRLEELPDVMDRLGAEIAKLEELLADPDLFSANPVKFQKATEALTDRQTALSNAEDEWLELEAKAEAAASA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LXW5</accession>
    <name>A0A1M5LXW5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Aspartyl protease family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0537</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69846.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0537"/>
    <dbReference type="EnsemblBacteria" id="SHG69846">
        <property type="protein sequence ID" value="SHG69846"/>
        <property type="gene ID" value="SAMN05444003_0537"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd05483">
        <property type="entry name" value="retropepsin_like_bacteria"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001969">
        <property type="entry name" value="Aspartic_peptidase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011969">
        <property type="entry name" value="Clan_AA_Asp_peptidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001995">
        <property type="entry name" value="Peptidase_A2_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034122">
        <property type="entry name" value="Retropepsin-like_bacterial"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="SSF50630"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02281">
        <property type="entry name" value="clan_AA_DTGA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50175">
        <property type="entry name" value="ASP_PROT_RETROV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00141">
        <property type="entry name" value="ASP_PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0645">Protease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="22"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="54"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase A2" evidence="3">
        <location>
            <begin position="111"/>
            <end position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG69846.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="208" mass="22428" checksum="7D14D60A1BFB2A51" modified="2017-03-15" version="1">MASRVLDWRASPYIDTMDGDQIANLAFLGLLGAAIAGSYFVSNRGQLGKMTQQAMIWALIFIGVIAAFGMWGDIRNTVSPQQMMVGESEISVPLRSDGHYHLSLEVNDVPLEFLVDTGASEVVLTKADARAIGINPDELNYIGSAMTANGSVPVAQVYLDTVELGGIQDANLRALVNGGEMDKSLLGMSYLNGFERIEIRDGELVLSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M1E8</accession>
    <name>A0A1M5M1E8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">EamA-like transporter family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0594</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG71091.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900385.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0594"/>
    <dbReference type="EnsemblBacteria" id="SHG71091">
        <property type="protein sequence ID" value="SHG71091"/>
        <property type="gene ID" value="SAMN05444003_0594"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="43"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="73"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="99"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="128"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="151"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="184"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="214"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="242"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="268"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="13"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="154"/>
            <end position="283"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG71091.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="294" mass="31647" checksum="2347AB5A1945D14C" modified="2017-03-15" version="1">MSTEITLSKILQGAAWMTGAIVAFTSMAIAGRAINFAHDTFEIMFFRSLVGILIMASIILVTKRQSDLRKNRLGLHFLRNICHFAGQNLWFFAVPLIPLAQLFAFEFTTPIWVLLFSPLLLGERLTMVNIATAALGFLGVLMVAQPGSAEISAGMLAAAGCAIFFALTAIFTRKLTIDQPIVCILFYLTVMQAGFGLVAAGIDGAIKLPTAETVPWLILIGIAGLVAHFCLTSALAIAPASIIMPIDFVRLPVIAVIGMLFYNEPFSLMIIAGAVLIFGANYLNIVVTGRHSPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M2T9</accession>
    <name>A0A1M5M2T9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Histidine kinase</fullName>
            <ecNumber evidence="4">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">SAMN05444003_0612</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cell membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG71571.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0612"/>
    <dbReference type="EnsemblBacteria" id="SHG71571">
        <property type="protein sequence ID" value="SHG71571"/>
        <property type="gene ID" value="SAMN05444003_0612"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017232">
        <property type="entry name" value="NtrY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045671">
        <property type="entry name" value="NtrY-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013767">
        <property type="entry name" value="PAS_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19312">
        <property type="entry name" value="NtrY_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00989">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037532">
        <property type="entry name" value="STHK_NtrY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7 12" id="KW-0418">Kinase</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <keyword evidence="8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="21"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="57"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="98"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="297"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="11">
        <location>
            <begin position="325"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="10">
        <location>
            <begin position="390"/>
            <end position="431"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="9">
        <location>
            <begin position="515"/>
            <end position="739"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG71571.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="749" mass="83359" checksum="8BBB1EF0CD632EA3" modified="2017-03-15" version="1">MQRTLLGIDMRRFSRWRRQRSVQNGLTLALVLMGPLLAAITAIVISGPLEGGTNSPILRLVLFADLIYVLLIAALVMQRVTKLIIARRNRSAGSQLHLRLTGAFVLLALIPTVLVAAFALLSINIGFEGWFSDRVSTVLGTSLDTAEAYEAEERSELQRDGEALAAYLNSERQANFFMNDGDVRQALQVVQGQIDRGLTEVFFVDGAGNIRTRGARSYEFNYERPTPEQFALADESGLVIIEDGSNDEFRALFRMDSFQDRYLLVTRQVDGSILSLLDETKETVAFYTQLERDRGRLLFGFGFIYLGFAVILILAATWLGLWFAERLSRPVGRLVDASQRVGAGDLDVRVIEEEGDDEIAQLGTYFNQMTSQLKGQRDELMETNAQTERRRRLFDSVLSSVTSGVVGLDPEGRITFVNPSAKALLAVDETQAETAIFLAVPEFAELFDRLKEGGRSAEQEQINLIRKGQQESLLVRMAQRRNEDGTLEGYVVAFDDVTDLVSAQRMAAWGDVARRIAHEIKNPLTPIQLSAERIKRKFSEEVSERDKLDQMTDVIVRQTNDLRRIVDEFSKFARMPEPELTNSNLVDVVRDAVTLQEAGQPEVIIHSNLPSDTILTDIDETMISQALINLIKNAGEATETFQEKYPSVDLKPEIRVELSTQDNDAIITVQDNGIGFPENRAKLFEPYVTTREKGTGLGLSIVKKIIEEHGGTLTLSDAEEFNGATHKGAKATIILPIAPAKQTAKKIPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MAT1</accession>
    <name>A0A1M5MAT1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized domain 1-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0716</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74009.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899349.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0716"/>
    <dbReference type="EnsemblBacteria" id="SHG74009">
        <property type="protein sequence ID" value="SHG74009"/>
        <property type="gene ID" value="SAMN05444003_0716"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003736">
        <property type="entry name" value="PAAI_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006683">
        <property type="entry name" value="Thioestr_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03061">
        <property type="entry name" value="4HBT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00369">
        <property type="entry name" value="unchar_dom_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4HBT" evidence="1">
        <location>
            <begin position="49"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG74009.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="141" mass="15220" checksum="ED739D2C33389604" modified="2017-03-15" version="1">MTLKMDADALKAFLKAEFPQVCDDFEIERLDEELLTVRLVTSQRHLRPGGTVSGPSMFGLVDVGVYLAILARIGPVALAVTTNCSIDFMRKPVAGADLLAETRILKLGRALAVGDVLVYSEGDDRPVARASLTYSIPPKST</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MB32</accession>
    <name>A0A1M5MB32_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">50S ribosomal protein L21</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rplU</name>
        <name evidence="7" type="ORF">SAMN05444003_0734</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 5">This protein binds to 23S rRNA in the presence of protein L20.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Part of the 50S ribosomal subunit. Contacts protein L20.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4 5">Belongs to the bacterial ribosomal protein bL21 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74455.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900397.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0734"/>
    <dbReference type="EnsemblBacteria" id="SHG74455">
        <property type="protein sequence ID" value="SHG74455"/>
        <property type="gene ID" value="SAMN05444003_0734"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01363">
        <property type="entry name" value="Ribosomal_L21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036164">
        <property type="entry name" value="L21-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028909">
        <property type="entry name" value="L21p-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001787">
        <property type="entry name" value="Ribosomal_L21"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21349">
        <property type="entry name" value="PTHR21349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00829">
        <property type="entry name" value="Ribosomal_L21p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141091">
        <property type="entry name" value="SSF141091"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00061">
        <property type="entry name" value="L21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 5" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4 5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="4 5" id="KW-0699">rRNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="123"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000562"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG74455.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="213" mass="22294" checksum="5876C23F294DAD95" modified="2017-03-15" version="1">MFAVLKTGGKQYKVASGDVLRVEKLAASAGDKVQFNDILMVGSTVGTPFVEGAGVQAEVIDQIKGPKTINFVKRRRKHSSARKKGHRQQLTLVRIGDILEKGADKSGVMAAVNGAGVAVAAAPKKAAAKKAPPKKEAAPKAEAKAAAGGDDLKQLSGVGPALEKKLHAAGVTTFAQIADWTADDVAAMDEKLSFKGRIEREGWIEQAKELAKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MCU4</accession>
    <name>A0A1M5MCU4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">FAD_binding_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0761</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75055.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899420.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0761"/>
    <dbReference type="EnsemblBacteria" id="SHG75055">
        <property type="protein sequence ID" value="SHG75055"/>
        <property type="gene ID" value="SAMN05444003_0761"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008152">
        <property type="term" value="P:metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.700.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003953">
        <property type="entry name" value="FAD-binding_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027477">
        <property type="entry name" value="Succ_DH/fumarate_Rdtase_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014614">
        <property type="entry name" value="UCP036654"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43260">
        <property type="entry name" value="PTHR43260"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00890">
        <property type="entry name" value="FAD_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036654">
        <property type="entry name" value="UCP036654"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD_binding_2" evidence="4">
        <location>
            <begin position="4"/>
            <end position="534"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00890"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG75055.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="551" mass="59683" checksum="6E1ACAFCF7990F80" modified="2017-03-15" version="1">MQADVVVVGAGLAGLVAAAELGDRGKKVIIVDQEGPQNLGGQAFWSLGGLFMVDTPEQRRLGIKDSHDLALRDWMGTAAFDRAEDDWPRKWAEAYVDFAAGEMRPWLHKLGLRWFPVVGWAERGGSSAEGHGNSVPRFHITWGTGPGVLEHFIRRCKEHENAGLISYKFRHQVDRIDMTNGTATGVSGTVLADDPAEQGAQTNRDKVGSFEIKANAVIVASGGIGGNFEMVRKVWPTERLGAAPKMMLSGVPAHVDGRMIGIAEDAGGHVINKDRLWFYTEGVRNWDPIWPHHGIRILPGPSSMWFDAEGNRFAPPAMPGFDTMATFKAILDSGYDYSWFILTQKVIKKEFALSGSEQNPDFTSAKWKEVIKQRILSGSRATDPVEAFKEHGEDFVVANSLAELVAGMNEVSGSALLDEDKIRTQIEARDSQVGNPYAKDAQIIAISAARNYRGDKLIRTAKPHRFLDPDNGPLIAVKLNLLTRKTLGGLQTNLDSQMVGAGGEVVPGLFAIGEAAGFGGGGYHGYNSLEGTFLGGCIFSGRAAGRSKAIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MD49</accession>
    <name>A0A1M5MD49_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_0763</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75112.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899423.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0763"/>
    <dbReference type="EnsemblBacteria" id="SHG75112">
        <property type="protein sequence ID" value="SHG75112"/>
        <property type="gene ID" value="SAMN05444003_0763"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 9" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="161"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="8">
        <location>
            <begin position="181"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="7">
        <location>
            <begin position="240"/>
            <end position="439"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG75112.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="439" mass="48473" checksum="954D586CDAFB9B80" modified="2017-03-15" version="1">MFFGWLKQYMPRGLYMRGALILLLPVLTIQLLVSVVFIQRHFEGVTDQMVDAVGIELRFIADLANQENTQDSAMSNILAIAEPLEMDVAWVEEVPEIGNDRQWTDFTGNSVRAYLLSEVPEISEISLANPRIVTVWMETPAGILQLSFLRKRVSASNPHQLLVIMVILGGLMTLIAYFFLRNQLRPIKRMADAAQAFGKGQKLDYSPSGAVEVRAAGAAFLDMRNRIERQTQNRTMMLSGVSHDLRTPLTRLRLGLSMLDSEEAAPMIADVDEMQYLLDGFLDFARSSSADELELADPHELVREAVSKAQRANMNVTLGESEGATDSTKLRPAAISRALDNLCNNALRYGTQAEVSAVITDKAIRFIVEDNGPGIPVDQREAALRPFERLDPSRNQDKGSGVGLGLTIVNDVARTHGGLLRLGDSEKLGGLKAEIVLPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MJ21</accession>
    <name>A0A1M5MJ21_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Maltose ABC transporter membrane protein /trehalose ABC transporter membrane protein /sucrose ABC transporter membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0852</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77197.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899552.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0852"/>
    <dbReference type="EnsemblBacteria" id="SHG77197">
        <property type="protein sequence ID" value="SHG77197"/>
        <property type="gene ID" value="SAMN05444003_0852"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="50"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="114"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="147"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="204"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="260"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="305"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="110"/>
            <end position="326"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG77197.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="335" mass="37503" checksum="837B57E99C7E9816" modified="2017-03-15" version="1">MNPAIQAMITMIVGIGGCIVYFYGANLLLDKVLFPAKGPNAGRNINRANMIRPWLFLLPAILALGLYLAYPVFATLRLSFLERLPGNEYAFVGFENYTKMFAEPKFTEAMINNVLWLMVVPAASTALGLLVAQLTDRLPWGNVAKSIIFMPMAISFVGAAVIFKLVYEARPVDVAQIGILNHLYLTFGGDEPQQWLTIPFWNNFFLMIVLIWIQTGFAMVILSAALRGIPEETVEAAIIDGANPVQIFFKIKIPQITSTIVVVWTTITIATLKVFDIVFAMTNGQWETQVLANYMYDKLFRAHDWGMGSAAAMIIMLMVTPILVWNVYNARKEMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MNC4</accession>
    <name>A0A1M5MNC4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative redox protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0926</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900418.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0926"/>
    <dbReference type="ESTHER" id="9rhob-a0a1m5mnc4">
        <property type="family name" value="Est-OsmC"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG78890">
        <property type="protein sequence ID" value="SHG78890"/>
        <property type="gene ID" value="SAMN05444003_0926"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022742">
        <property type="entry name" value="Hydrolase_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003718">
        <property type="entry name" value="OsmC/Ohr_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036102">
        <property type="entry name" value="OsmC/Ohrsf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12146">
        <property type="entry name" value="Hydrolase_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02566">
        <property type="entry name" value="OsmC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82784">
        <property type="entry name" value="SSF82784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hydrolase_4" evidence="1">
        <location>
            <begin position="46"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG78890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="396" mass="42091" checksum="460BBE11623D7EF7" modified="2017-03-15" version="1">MPTERFTFPGHAGDMLAARLEMPEGPHVATAIFAHCFTCSKDISAARRIAARLASMGFAVLRFDFTGIGQSGGAFENTSFSSNVQDLRAAHDALVERGLQPSLLVGHSLGGAAVLKAASQLDTIKGVVTIGAPADPGHVAHNFSDAIPKILEDGSAEVTLGGRPLTIGKDFVEDVAETSIESCVANLNAALLVLHAPLDQTVGIENASQIFLSAKHPKSFVTLDSADHLVSDSKDAEYAADTIATWATRYIPMEEIPAQPDVPEGILRVTEADAAGFLQDVQSGPHHLVADEPASVGGTNRGLTPYGFLSGGLGACTSMTIRMYARRKQWPLEGVHVDISHNKSHIDGERIDVFKRDITLTGPLDDEQRQRLLEIADKCPVHKTLEAGAHVETSLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MR63</accession>
    <name>A0A1M5MR63_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein, PA2063/DUF2235 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0951</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899698.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG79369">
        <property type="protein sequence ID" value="SHG79369"/>
        <property type="gene ID" value="SAMN05444003_0951"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018712">
        <property type="entry name" value="DUF2235"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09994">
        <property type="entry name" value="DUF2235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF2235" evidence="1">
        <location>
            <begin position="2"/>
            <end position="296"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG79369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="413" mass="46789" checksum="3AED1A28A52F4741" modified="2017-03-15" version="1">MKRIAIFIDGTWNRPDAQHPTNVLRLSRCVHHYDRKTNVPQYVIYTAGVGSGEGSTWLARKLDRWFGGGFGWGSLALMENVYRRLVYAYEPGDEVYVFGFSRGAFAARSLVGLIRSCGIAPRSHLDRIPEAVARYVDRSGATHPEDPSSYEFRESFAPYTATSDKEFKWRRERGNTEAIRLYVDYVGVWDTVSALGVPKWAPFAKSFNQKYEFHDAELSSSVLSARHAISLDERRSSFPAHPWSNLDRLNEPTLSAKGPKQRKPFLQQWFPGNHGSVGGGGRRIGLSSITMHWIAQGAVDAGLSISWEDFDRQAWRFSVLEKLDNKFGPVGAVNWVLQQSKKDREGPSDIENLSLAAVDRFQLDDEYRPKSLDQIYHELYDLSEAEWGDLRGQMIARDGGPTHDLDDGLRPRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MTR7</accession>
    <name>A0A1M5MTR7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="11">NADH dehydrogenase subunit L</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_0992</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 6">Membrane</location>
            <topology evidence="2 6">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80183.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899735.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0992"/>
    <dbReference type="EnsemblBacteria" id="SHG80183">
        <property type="protein sequence ID" value="SHG80183"/>
        <property type="gene ID" value="SAMN05444003_0992"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008137">
        <property type="term" value="F:NADH dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042773">
        <property type="term" value="P:ATP synthesis coupled electron transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018393">
        <property type="entry name" value="NADHpl_OxRdtase_5_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001750">
        <property type="entry name" value="ND/Mrp_mem"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003945">
        <property type="entry name" value="NU5C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001516">
        <property type="entry name" value="Proton_antipo_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42829">
        <property type="entry name" value="PTHR42829"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00361">
        <property type="entry name" value="Proton_antipo_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00662">
        <property type="entry name" value="Proton_antipo_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01974">
        <property type="entry name" value="NDH_I_L"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="6"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="30"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="79"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="118"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="141"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="172"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="214"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="258"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="288"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="316"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="383"/>
            <end position="411"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="431"/>
            <end position="456"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="477"/>
            <end position="498"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="580"/>
            <end position="598"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="679"/>
            <end position="699"/>
        </location>
    </feature>
    <feature type="domain" description="Proton_antipo_N" evidence="10">
        <location>
            <begin position="62"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="Proton_antipo_M" evidence="9">
        <location>
            <begin position="135"/>
            <end position="443"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="536"/>
            <end position="556"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00361"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00662"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG80183.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="704" mass="77953" checksum="D2B0793EB1A18AD3" modified="2017-03-15" version="1">METIILFAPLVGALLCGFGWKFIGETTAQWVATSLLFLAAILSWIVFLTFDGTTESITILRWIESGTLSTDWAIRMDRLTAIMLIVITTVSALVHLYSFGYMAHDDHFAKGVSYRPRFFAYLSFFTFAMLMLVTSDNLIQMFFGWEGVGVASYLLIGFYYKKPSANAAAIKAFVVNRVGDFGFALGIFGIYWVTDSVKFEDIFAMTPQLAEMTMPFLWAEWNVANLLAFLLFVGAMGKSAQLLLHTWLPDAMEGPTPVSALIHAATMVTAGVFLVCRMSPLYEYAPETQQFIVFLGATTAFFAATVGLVQNDIKRVIAYSTCSQLGYMFVAAGVGVYSVAMFHLLTHAFFKAMLFLGAGSVIHGMHHEQDMRNYGGLKDKMPYTFWAMMIGTLAITGVGIPLLYIGFPIGFAGFVSKDAIIESAFAADAGYAFWMLVVAAFMTSFYSWRLMFLTFYGEPRGDKHTHEHAHESPGTMLTPLAVLSVGAIFSGMVFYGPFFGSDEKVGKFFGYIEATEKTEDTAMGFSLIAPAYAAGEETDDHSDDGGKETPIQQPGEGAIYHNPDNHVLHDAHYVPNWVKLSPFIVMVAGFALAWLMYIRRPDLPAKLAEQQRPLYNFLLNKWYFDELYDFVFVRPAIAIGNFLWKRGDMGVIDGGINGLAMGVVPFFTRLLGRMQSGYIFTYAFAMVIGIAVLLTWVSLSGGAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MVW7</accession>
    <name>A0A1M5MVW7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized membrane-anchored protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1045</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81272.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899784.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG81272">
        <property type="protein sequence ID" value="SHG81272"/>
        <property type="gene ID" value="SAMN05444003_1045"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021830">
        <property type="entry name" value="DUF3422"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11902">
        <property type="entry name" value="DUF3422"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="370"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="401"/>
            <end position="418"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG81272.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="426" mass="47793" checksum="49B8535A65FFB742" modified="2017-03-15" version="1">MPPIEDHPQRYALANELHARPFPIIKAPGRAAYLAIKRADNAVARDRNTDREHLLALLDRYGAPHPQPDATHYSGSIGRHFLKWESHTEFVTYTILGEGVSDTPFDAKTFGMFPEDWLDNAPGTRMTSALIRIEELEDEQTVIQKTEEWFVPESLAISRVLNDELIVSSDFRIDEGGHIRFGVFARKGAGPRRIGRVVQRLTEIETYKAMSMLGLTRARALSPKMGAMEQQLGTLLHDMGQGDRPADEVLQSLLTVSADVENMIAQSAFRFSGTAAYSRIVNQRIEVLREERFNGLQTFAEFMMRRFDPAMRTVASTEARLKALSDRAMRAGDLLRTKVDVDRSAQNQELLSSMNKRADEQLRLQRTVEGLSVVAISYYAVNLVVYAFGPAAESVGLSKTLLAAGATPIVLLIVWWLIKQIHKRIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MWH2</accession>
    <name>A0A1M5MWH2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Paraquat-inducible protein B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1058</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81555.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899795.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1058"/>
    <dbReference type="EnsemblBacteria" id="SHG81555">
        <property type="protein sequence ID" value="SHG81555"/>
        <property type="gene ID" value="SAMN05444003_1058"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="48"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="291"/>
            <end position="392"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG81555.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="814" mass="86458" checksum="81332C05A9A61868" modified="2017-03-15" version="1">MSDPQRAADMDVRKSRGGLSWVWIVPVIALIASLSVAWQNYSQRGTLIDIIFQSASGVRAGETVLRFRDVEVGTVEKVAFDEGLTDVIVSVRVDNEVAPYLDDDAQFWVVQPDVSLRGVTGLETVLSGVFIEGTWDGSTDVAQTEFYGMDSAPLTTLDQLGTAITLRTRDGSALSKGAPILHRGIRVGTLETPRLSANGENVIVDGFVDFPYDRILTTATRFWDTSGFSLSLGAGGVELDVNSIASLIEGGVAFDTVVSGGERVSQGYVFDIFEDEEIARNSVFVNPNTPTVEIAVLFDDSVSGLTKGSEVRFQGIRIGQVADLSAIINEMDGEADVQLQAILSLETNRIGMDADTTEEEALQFLADYVENGLRARLSTANILSGALIVELIEEENATPATLDIDLEPYPIIPTADAAIADVAETAEEVLARIERLPIEELLQGAIDLMASIERLANDESVRDVPEELASLLKETRALVASEDVQGIPPDIRDAIGDFDGLVQSFVAAELATQLTDALTVTTEAASNISDGTENLSEISVALEDLLTKVNALELAALVTEATSTLDSIDTLIESDETQALPASLNETLADARAVLVEAERFLASEDLQALPSDLRTTVTDLNAILAQIQAAELVLKLDDAITSAAAAADSIETASADLPAITAELQSLAEKANALKVEELIDEATQTLASIDALLGADGVDELPENLNLSLAELRGILSDLRTGGAVENLNSALSSASGAAEALEDATVDLPDLIARANALVRESREVVESYSSRSRFGAEALTTLQGIQDAADAISALARTIQRNPSSLIRGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MX40</accession>
    <name>A0A1M5MX40_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1076</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81910.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900426.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1076"/>
    <dbReference type="EnsemblBacteria" id="SHG81910">
        <property type="protein sequence ID" value="SHG81910"/>
        <property type="gene ID" value="SAMN05444003_1076"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013217">
        <property type="entry name" value="Methyltransf_12"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08242">
        <property type="entry name" value="Methyltransf_12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransf_12" evidence="1">
        <location>
            <begin position="56"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG81910.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="397" mass="43578" checksum="1F84922AF91D56E5" modified="2017-03-15" version="1">MSKVQAQYEVFPYPERNPKDEAKRLISGSPSIPQEMDHHLWGGQRDWSQPLRALFAGGGTGDGLIQLAQRLTDAGKPYEITYIDLSTASRQIAEARAKERGLGGITFVTGSLLDAPEYEPFDYIDCCGVLHHLPDPLAGLTALKAAIAPNGGLGFMVYAPYGRSGVYPLQEAFNTLYGHLPPKSQIKHAKKVFAAIPDGHPFKRNPNVADHKQSDAGFYDLLLHSQDRAYRVGEWIDALDQTGWSLAQFSQPGLYDIETLTDAPSGLSAIEAMGVAEALRGTIKTHVGYARRAEDKAPEFSPLSDRIPHLNNMEPKPLASAVVAKKLPDLRVGSERVQISLKPDIAPLIAAIDGRRCVKEIFEISGLSDDKAQRHWASLERAFEPWGLLHYSTVLAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MXK4</accession>
    <name>A0A1M5MXK4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Aspartate aminotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1083</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 3">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82066.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899815.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1083"/>
    <dbReference type="EnsemblBacteria" id="SHG82066">
        <property type="protein sequence ID" value="SHG82066"/>
        <property type="gene ID" value="SAMN05444003_1083"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000192">
        <property type="entry name" value="Aminotrans_V_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024169">
        <property type="entry name" value="SP_NH2Trfase/AEP_transaminase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00266">
        <property type="entry name" value="Aminotran_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000524">
        <property type="entry name" value="SPT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="2 3" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_5" evidence="4">
        <location>
            <begin position="22"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="3">
        <location>
            <position position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000524-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG82066.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="375" mass="40375" checksum="DE89C74DD9E0B766" modified="2017-03-15" version="1">MDGTPHSVDPDGLMEFSVVFTDRSLNHMSKAFQGVMNDIRDMLKEVYNADKVALVPGGGTYGMEAVARQFGAGSHAFVVRNGWFSYRWSQIFEAGDFAAKTTVMKARQSGNDTRAPFAPAPIEDVVAAIKKAKPDVVFAPHVETSAGIILPDDYISALADAAHEVGAIMVLDCIASGCAWVDMKVTGVDVLISAPQKGWSSTPSAGLVMMSDRAVARMENTTSDSFVVDLKKWTQIMDAYENGGHAYHATMPTDGLRAFRDTMLETRDFGFDKLKEAQWALGNAVRAALAEKGIKSVAAEGFGAPGVVVSYTNDPDIQNGSKFAAEGMQIAAGVPLQCDEPDDFRTFRLGLFGLDKLYDVDATVGRLLPVLNKVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MXL3</accession>
    <name>A0A1M5MXL3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 7">Octanoyltransferase</fullName>
            <ecNumber evidence="6 7">2.3.1.181</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Lipoate-protein ligase B</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Lipoyl/octanoyl transferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">lipB</name>
        <name evidence="12" type="ORF">SAMN05444003_1074</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 6 7">Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6 7">
            <text>L-lysyl-[protein] + octanoyl-[ACP] = H(+) + holo-[ACP] + N(6)-octanoyl-L-lysyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:17665"/>
            <dbReference type="Rhea" id="RHEA-COMP:9636"/>
            <dbReference type="Rhea" id="RHEA-COMP:9685"/>
            <dbReference type="Rhea" id="RHEA-COMP:9752"/>
            <dbReference type="Rhea" id="RHEA-COMP:9928"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29969"/>
            <dbReference type="ChEBI" id="CHEBI:64479"/>
            <dbReference type="ChEBI" id="CHEBI:78463"/>
            <dbReference type="ChEBI" id="CHEBI:78809"/>
            <dbReference type="EC" id="2.3.1.181"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 6 7">Protein modification; protein lipoylation via endogenous pathway; protein N(6)-(lipoyl)lysine from octanoyl-[acyl-carrier-protein]: step 1/2.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="6">In the reaction, the free carboxyl group of octanoic acid is attached via an amide linkage to the epsilon-amino group of a specific lysine residue of lipoyl domains of lipoate-dependent enzymes.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6 7">Belongs to the LipB family.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.181" evidence="6 7"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81862.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899809.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1074"/>
    <dbReference type="EnsemblBacteria" id="SHG81862">
        <property type="protein sequence ID" value="SHG81862"/>
        <property type="gene ID" value="SAMN05444003_1074"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00538">
        <property type="reaction ID" value="UER00592"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033819">
        <property type="term" value="F:lipoyl(octanoyl) transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009249">
        <property type="term" value="P:protein lipoylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd16444">
        <property type="entry name" value="LipB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00013">
        <property type="entry name" value="LipB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004143">
        <property type="entry name" value="BPL_LPL_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000544">
        <property type="entry name" value="Octanoyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020605">
        <property type="entry name" value="Octanoyltransferase_CS"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF016262">
        <property type="entry name" value="LPLase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00214">
        <property type="entry name" value="lipB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51733">
        <property type="entry name" value="BPL_LPL_CATALYTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01313">
        <property type="entry name" value="LIPB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6 7" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="BPL/LPL catalytic" evidence="11">
        <location>
            <begin position="30"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="6 9">
        <location>
            <begin position="69"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="6 9">
        <location>
            <begin position="149"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="6 9">
        <location>
            <begin position="162"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-thioester intermediate" evidence="6 8">
        <location>
            <position position="180"/>
        </location>
    </feature>
    <feature type="site" description="Lowers pKa of active site Cys" evidence="6 10">
        <location>
            <position position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00024732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRNR" id="PIRNR016262"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR016262-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR016262-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR016262-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG81862.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="215" mass="23916" checksum="5D8EEC2396834E7F" modified="2017-03-15" version="1">MVEWKISDGLTDYSEALDAMETRANALVDGEADELIWLVEHPPLYTAGTSAKIEDLVDPDRFPVFEAKRGGQYTYHGPGQRVVYTMLDVGKRGRDVRAFVCQLEDWIIETLDQFNVKGERRAGRVGVWVQRPEKPKAIDGSLAEDKVAALGIRLRKWVSFHGLSINVEPDLSHFDGIVPCGIHEHGVTSLTDLGLPVTMNDVDVALRKTCPFLDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N7Y6</accession>
    <name>A0A1M5N7Y6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Magnesium transporter MgtE</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_1235</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Acts as a magnesium transporter.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the SLC41A transporter family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85660.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899945.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1235"/>
    <dbReference type="EnsemblBacteria" id="SHG85660">
        <property type="protein sequence ID" value="SHG85660"/>
        <property type="gene ID" value="SAMN05444003_1235"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015095">
        <property type="term" value="F:magnesium ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.357.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.60.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006668">
        <property type="entry name" value="Mg_transptr_MgtE_intracell_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038076">
        <property type="entry name" value="MgtE_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006669">
        <property type="entry name" value="MgtE_transporter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006667">
        <property type="entry name" value="SLC41_membr_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036739">
        <property type="entry name" value="SLC41_membr_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43773">
        <property type="entry name" value="PTHR43773"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01769">
        <property type="entry name" value="MgtE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03448">
        <property type="entry name" value="MgtE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00924">
        <property type="entry name" value="MgtE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161093">
        <property type="entry name" value="SSF161093"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00400">
        <property type="entry name" value="mgtE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0129">CBS domain</keyword>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="295"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="321"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="369"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="397"/>
            <end position="422"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="434"/>
            <end position="457"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="8">
        <location>
            <begin position="150"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="8">
        <location>
            <begin position="213"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU362011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG85660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="458" mass="50012" checksum="F30CCC279E03ADC1" modified="2017-03-15" version="1">MSDAIDDIEEEEAFGISDKLVSDVMEAVDADADEVVEDLVDPLHPADVAHLIEQLDDKDRKEFLRVWPGGIEGEVISELDDNLREEVIDSLDEEELAEAVRDLDSDDVVDLIEDLDDEQTEAVLEALDDSDRALVEQALTYPEESAGRHMQVELVRGPEHWTVGDAIDFLRSDVELPEQFYHIILVDPRMKPVGYVTLGRILSSDRKTPLKELEEDSFRTFNVEQDVEEVAQAINHYHMITAPVVDDDDRLIGVITIDDAMAFLEEEAEEDILRLAGVGEGSLSDRVIETTKNRFPWLAVNLATAILASLVIAMFEETLSGLVALAILMPIVASMGGNAGTQSLTVAVRALATRDLTDANVWRVVRREVLVGLVNGIIFAVVMGAVGYFWFGNLTLAYVIGAAMVINLAVAGLAGTGVPIILEKLGIDPALASGAFVTTVTDVVGFFAFLGLAALWLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N9U2</accession>
    <name>A0A1M5N9U2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Fructokinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1266</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86267.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899971.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1266"/>
    <dbReference type="EnsemblBacteria" id="SHG86267">
        <property type="protein sequence ID" value="SHG86267"/>
        <property type="gene ID" value="SAMN05444003_1266"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016773">
        <property type="term" value="F:phosphotransferase activity, alcohol group as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002173">
        <property type="entry name" value="Carboh/pur_kinase_PfkB_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011611">
        <property type="entry name" value="PfkB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00294">
        <property type="entry name" value="PfkB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="SSF53613"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00584">
        <property type="entry name" value="PFKB_KINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 4" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PfkB" evidence="3">
        <location>
            <begin position="2"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG86267.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="297" mass="31211" checksum="69CC2FEBBB1440A4" modified="2017-03-15" version="1">MILCCGEALIDMLPRQSTNGEDCFAPLAGGAVMNTAVALGRLGANVQFFSGLSNDLFGEILKDHLASSKVDTSPVHWSDDPTTLAFVKLVDGHASYAFYDENTAGRLLSVDDLPEVTADALFFGGISLVVEPCATAYETLLLRDSASRLTMIDPNVRPSFIKDEDRYRARINKMMAASDIVKTSDEDLDWLTGSTDATSLLSSKTKVVLLTRGADGVTILTEAGSTDVPAQKVDVVDTVGAGDTFNAGFLAGLSQQNCLSQSALLGADLVSAAELGAKAAAITVSRAGANPPWANEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NCE4</accession>
    <name>A0A1M5NCE4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Outer membrane protein OmpA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1324</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87178.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900020.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1324"/>
    <dbReference type="EnsemblBacteria" id="SHG87178">
        <property type="protein sequence ID" value="SHG87178"/>
        <property type="gene ID" value="SAMN05444003_1324"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07185">
        <property type="entry name" value="OmpA_C-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006664">
        <property type="entry name" value="OMP_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006665">
        <property type="entry name" value="OmpA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036737">
        <property type="entry name" value="OmpA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00691">
        <property type="entry name" value="OmpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01021">
        <property type="entry name" value="OMPADOMAIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103088">
        <property type="entry name" value="SSF103088"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51123">
        <property type="entry name" value="OMPA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="OmpA-like" evidence="3">
        <location>
            <begin position="63"/>
            <end position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG87178.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="226" mass="24637" checksum="FEEAF4ED42A76A46" modified="2017-03-15" version="1">MKYLLIASAGFSLLAGCADPIREAGSFDREAGSQLDVGDFGNATMNNTLVQTGQLDYTINLARRFSAEVDDTINFAFDSSQLTAPAQATLRQQADWIKQFPEVRFKVFGHTDLVGSQSYNRSLGLRRAQSAVNYLVSQGIDRNRLEAVVSFGETQPLIQTESRDVRNRRTVTEVSGFVQNHPTVLNGEYARVIYREYVNSGTFRQQVSPLSISTGGGDIPGSGGGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NFQ9</accession>
    <name>A0A1M5NFQ9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Proline iminopeptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1373</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase S33 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88039.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900065.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1373"/>
    <dbReference type="EnsemblBacteria" id="SHG88039">
        <property type="protein sequence ID" value="SHG88039"/>
        <property type="gene ID" value="SAMN05444003_1373"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002410">
        <property type="entry name" value="Peptidase_S33"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12697">
        <property type="entry name" value="Abhydrolase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00111">
        <property type="entry name" value="ABHYDROLASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00793">
        <property type="entry name" value="PROAMNOPTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5011979663" evidence="2">
        <location>
            <begin position="20"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="domain" description="AB hydrolase-1" evidence="3">
        <location>
            <begin position="41"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010088"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF12697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG88039.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="288" mass="31506" checksum="5EE2A2A099EDDFEB" modified="2017-03-15" version="1">MKKTTLGLAAALMGATAAAAEMIEVNGANLFYESIGSGEPILVMHGGLGLSHDYLRPYFDQLSETNTVVYYDHLGNGLSDKPDDYAEMNFDRLTSDAAELMTALGHDTFTLIGHSYGGFITQEFAINYADRLDGLVLVDTVPAFDYQPTVSGPDENMAAFGKLFTQPMADNDDWRATWNPVAEIYFHQWDPDVGADLDELTNYEYRAWNAAGALLGTFNTLEDLPNVPTRALVIAGRHDGITVPDAGAERIAGLLPNATLMIFEESGHYPFIEEEAAFFEALNGWLAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NKY5</accession>
    <name>A0A1M5NKY5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">2-oxoglutarate dehydrogenase E1 component</fullName>
            <ecNumber evidence="5">1.2.4.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Alpha-ketoglutarate dehydrogenase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">SAMN05444003_1480</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">E1 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the decarboxylation of 2-oxoglutarate, the first step in the conversion of 2-oxoglutarate to succinyl-CoA and CO(2).</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer. Part of the 2-oxoglutarate dehydrogenase (OGDH) complex composed of E1 (2-oxoglutarate dehydrogenase), E2 (dihydrolipoamide succinyltransferase) and E3 (dihydrolipoamide dehydrogenase); the complex contains multiple copies of the three enzymatic components (E1, E2 and E3).</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the alpha-ketoglutarate dehydrogenase family.</text>
    </comment>
    <dbReference type="EC" id="1.2.4.2" evidence="5"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90274.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900159.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1480"/>
    <dbReference type="EnsemblBacteria" id="SHG90274">
        <property type="protein sequence ID" value="SHG90274"/>
        <property type="gene ID" value="SAMN05444003_1480"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004591">
        <property type="term" value="F:oxoglutarate dehydrogenase (succinyl-transferring) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11610">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032106">
        <property type="entry name" value="2-oxogl_dehyd_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011603">
        <property type="entry name" value="2oxoglutarate_DH_E1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001017">
        <property type="entry name" value="DH_E1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031717">
        <property type="entry name" value="KGD_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042179">
        <property type="entry name" value="KGD_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005475">
        <property type="entry name" value="Transketolase-like_Pyr-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23152">
        <property type="entry name" value="PTHR23152"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16078">
        <property type="entry name" value="2-oxogl_dehyd_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00676">
        <property type="entry name" value="E1_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16870">
        <property type="entry name" value="OxoGdeHyase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02779">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000157">
        <property type="entry name" value="Oxoglu_dh_E1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00861">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00239">
        <property type="entry name" value="2oxo_dh_E1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0786">Thiamine pyrophosphate</keyword>
    <feature type="domain" description="Transket_pyr" evidence="11">
        <location>
            <begin position="628"/>
            <end position="821"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="53"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011301"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012280"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00013321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00030680"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00861"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG90274.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="986" mass="110530" checksum="F01EF6B52270A6B9" modified="2017-03-15" version="1">MTDQSPNDVFHSSSFLQGHNAEYVEQLYARYADNPGAVDESWQAFFRSLGDAPTDTKAEAAGPSWARTDWPPQPNDDLTAALDGQWPAEPEAAGKKIKEKAAEKGVTLDENQVRAAVLDSVRALMIIRAYRIRGHLVADLDPLGMRDATPHPELDPASYGFKPVDMDRPIFIDNVLGLEVATMTEIMAIVKRTYCGTFALQYMHISNPEEAGWLKERIEGYGKEIAFTKEGRKAILGSMVKAEGFEKFLHVKYMGTKRFGLDGGESLIPAMEQIIKRGGQLGLEDIVIGMPHRGRLSVLANVMEKPYRAILNEFEGGSFKPEDVDGSGDVKYHLGASSDRSFDGNNVHLSLTANPSHLEAVNPVVLGKVRAKQDQKNDEDRTKVMGILLHGDAAFAGQGVVAEGFGLSGLKGHKTGGTMHIVVNNQIGFTTAPHFSRSSPYPTDIALMVEAPIFHVNGDDPEAVVHAARVATEFRQKFHKDVVLDIICYRRFGHNEGDEPMFTNPVMYKKIKTHKTSLTLYTERLVRDGLIPEGEIEDMKTAFQAHLNEEFEAGKNYKPNKADWLDGRWSHLDKRDGEYQRGQTAIKRETFDEIGKALTTVPEGFPIHKTVGRLVKAKTEMFEKGEGFDWATGEALAFGSLALEGFPVRLAGQDCTRGTFSQRHSAFINQDTEERYYPLNNIREGQAQYEVIDSMLSEYAVLGFEYGYSLAEPNALVLWEAQFGDFANGAQIMFDQFISSGESKWLRMSGLVCLLPHGYEGQGPEHSSARLERFLQMCGQDNWIVANCTTPANYFHLLRRQIHRDFRKPLIIVTPKSLLRHKMAISKAEEFTEGSSFHRIMWDDAQYGNSDTKLAADDKIKRVVMCSGKVYYDLLEERDARRINDIYIMRYEQFYPFPAQSSVKELERFKNAEMVWCQEEPRNQGAWTFMEPNLEWVLTRIKAKHTRPVYAGRPPSASPATGLASQHKAQQAALVDDALTIKGSKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NLI1</accession>
    <name>A0A1M5NLI1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF1989 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1460</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89793.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900142.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1460"/>
    <dbReference type="EnsemblBacteria" id="SHG89793">
        <property type="protein sequence ID" value="SHG89793"/>
        <property type="gene ID" value="SAMN05444003_1460"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018959">
        <property type="entry name" value="DUF1989"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09347">
        <property type="entry name" value="DUF1989"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1989" evidence="1">
        <location>
            <begin position="49"/>
            <end position="227"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG89793.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="279" mass="30467" checksum="C896993C1E8B9642" modified="2017-03-15" version="1">MSNAPSDAEERRAIEPVICYPTETLPQPDMALYASFRDGLELVDTAIAPPREAAAIKVPSGHFLRIHSVEGPQVGDLNLFNAQNLAERFYSGKTRALHGTHITTGDRMWSTFPYLRPMATVTDDTLNWYGMDQYGGSVHDVIGTRCDPYTGNVLSDTQYHHCCHSNLTRALADAAGLSMNAAENLVHDVLNVFMCTGFTRDTGQYFMKASPVSPGDYLELFAEIDLLAVLSACPGGDCSSEHSSDAAACYPLKMEVLKPASTEGWQSPPINGYDRSHGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NMK1</accession>
    <name>A0A1M5NMK1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, GntR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1486</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90429.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900165.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1486"/>
    <dbReference type="EnsemblBacteria" id="SHG90429">
        <property type="protein sequence ID" value="SHG90429"/>
        <property type="gene ID" value="SAMN05444003_1486"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011711">
        <property type="entry name" value="GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008920">
        <property type="entry name" value="TF_FadR/GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07729">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00895">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48008">
        <property type="entry name" value="SSF48008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="4">
        <location>
            <begin position="11"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG90429.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="215" mass="23792" checksum="41A775B1C1E63648" modified="2017-03-15" version="1">MIRPKTQDGVGAAHERVYRTLRTRILHGEIKPGMALTLRGIGKEFDVSMTPAREAVRRLVAEGALSLSSSGRVSTPELSNERIEELAALRALLEPELASRALPRAHLALIERLEQINNRVSQMVARHDAPGYIRMNLEFHRTLYLRAQAPAMLALTETVWLQLGPTMSALYGRLNRTEPPASHRLILSALKAGDEPGLRLAIRADATKGLRMLKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NSR0</accession>
    <name>A0A1M5NSR0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">L-threonine aldolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1576</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG92572.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900245.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1576"/>
    <dbReference type="EnsemblBacteria" id="SHG92572">
        <property type="protein sequence ID" value="SHG92572"/>
        <property type="gene ID" value="SAMN05444003_1576"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006520">
        <property type="term" value="P:cellular amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001597">
        <property type="entry name" value="ArAA_b-elim_lyase/Thr_aldolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01212">
        <property type="entry name" value="Beta_elim_lyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Beta_elim_lyase" evidence="3">
        <location>
            <begin position="3"/>
            <end position="290"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG92572.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="348" mass="37817" checksum="02707B4594414412" modified="2017-03-15" version="1">MFFASDNAGPAHPKVIEALSKANEGYAMGYGADAIMDRVRDKIRDVFEAPQAAVYLVATGTAANSILLATMAQPWQTIFCSPMAHIHEDECNAPEFYSGAKLTIVPAENAKMTPETLRASIEGEETRGVHGPQRGPVSITQVTEKGTVHSVNEIKALTGVASDYGLKCHLDGARFANALSFLGCTAAEMTWKAGIDAVSFGGTKNGLLGVEACVMFDPELAWEFELRRKRGGHLFSKHRYLSAQMDAYLADDLWLDMAGNANARCAQLTEGLRGIDHVTLSFEPEANMIFFQMPRAEHARVLAGGATYYVMDGDHTSGDPDRLLTGRLVTDWSMTEDVIESFLALMRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NST0</accession>
    <name>A0A1M5NST0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pimeloyl-ACP methyl ester carboxylesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1577</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG92592.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1577"/>
    <dbReference type="EnsemblBacteria" id="SHG92592">
        <property type="protein sequence ID" value="SHG92592"/>
        <property type="gene ID" value="SAMN05444003_1577"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12697">
        <property type="entry name" value="Abhydrolase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00111">
        <property type="entry name" value="ABHYDROLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="43"/>
            <end position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG92592.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="261" mass="27639" checksum="B597C5168D65DB2B" modified="2017-03-15" version="1">MPTEILAGRSANVLRMGAGGPAVLGIHCSLARSEALLPLIKTLAPSGRVTLFDMPGHGRSAPWDDEGDYQGVTAQQALELCTNPTHIIGHSFGATVALRAAVLAPELVSRLTLIEPVFFAAAKGTQAYEQHRRDFLPFEEAIAIGDTAKAAEVFNDMWGALSWSHSPAATRSALIDQIHLIPAGAPAIEEDNAELLTSGALEALDLPVTLIRGDKTQPIIADIHHALVRRLPNATDLIVKGAGHMLPITHPSETATLIKSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NUC8</accession>
    <name>A0A1M5NUC8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">UPF0260 protein SAMN05444003_1575</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1575</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0260 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG92543.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900244.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1575"/>
    <dbReference type="EnsemblBacteria" id="SHG92543">
        <property type="protein sequence ID" value="SHG92543"/>
        <property type="gene ID" value="SAMN05444003_1575"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00676">
        <property type="entry name" value="UPF0260"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005358">
        <property type="entry name" value="Puta_zinc/iron-chelating_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008228">
        <property type="entry name" value="UCP006173"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37421">
        <property type="entry name" value="PTHR37421"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03692">
        <property type="entry name" value="CxxCxxCC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006173">
        <property type="entry name" value="UCP006173"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG92543.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="155" mass="17634" checksum="80E07D394F303404" modified="2017-03-15" version="1">MSTSITRDGIRPEFWKKTPLEDLGKLEWEALCDGCGKCCLNKLEDDDGTVELTRVACRLLDTESCLCTQYPIRHQFVPECIVLTPKTLEDNMYWLPKTCAYRLVFEGKDLEPWHPLISGDPSTVHQAGVSMAGKAVPEIEVHEDDWEDHIIEEPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NVD8</accession>
    <name>A0A1M5NVD8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Chemotaxis protein MotB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1591</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG92943.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900258.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1591"/>
    <dbReference type="EnsemblBacteria" id="SHG92943">
        <property type="protein sequence ID" value="SHG92943"/>
        <property type="gene ID" value="SAMN05444003_1591"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd07185">
        <property type="entry name" value="OmpA_C-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006665">
        <property type="entry name" value="OmpA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036737">
        <property type="entry name" value="OmpA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00691">
        <property type="entry name" value="OmpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103088">
        <property type="entry name" value="SSF103088"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51123">
        <property type="entry name" value="OMPA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1 3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="20"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="domain" description="OmpA-like" evidence="4">
        <location>
            <begin position="651"/>
            <end position="779"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="230"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="321"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="392"/>
            <end position="486"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="532"/>
            <end position="633"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG92943.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="779" mass="83773" checksum="CA8F426E57F58715" modified="2017-03-15" version="1">MALARRSSQRFNTAIWPGFVDAMTGLLLVLMFVLTIFMVIQFVLRETITGQESQLNDLAAEVASLTAVLGLERDRTATLESTLSDAEAQAAAQAALISQLSLDLEVSQTALADAQTQIIGFEAQVAGLLAERVAQDDVIAGLETEQTRLLSEQEALNLALAQARDEIDEGTEAARLAAAQREALEAMIAELQTQGDADATRITALEQERLSNVARIDELEAAELAQAAAAEALRERLANADTELTAMTLALEEKRREAEETLTLLAATEAARDDLTENLAAALLAQQNAESALASAAETEQSLNAQLLAALTAQGASVEAMAVLESRLNDRLEEIASLQTRLDQATEILASGNVANEDLAARLAAALLANDELTAATDAEIADLQSRLEQAVQAEVATSEDAQRAMQELQAQLAAALLAEQTTLEQAEAREKDLQNQLVEALLAQQQATAAAEGASQSQQDLQDRLAEALLAREALEAQVAVLTDTTDEAASLRSQLAAALADQADAQTQADRQAALLAAANDALSQEEALSAESQRQVALLNAQVAQLRSQVGSLQELLNLAAEADSDAQVQIERLGEQLNSALARVAAEERRRAALEEAERIRLEAEAARLAEETERLASEAQNLERFRSDFFGEMRNILESQEGVQIVGDRFVFSSEVLFQPASAELSELGQQEIAKVAAILQDVADEIPEGIDWVIRVDGHTDNVPLSGQGRYADNWELSQARALSVVRYMTEQLGIPPNRLAANGFGEFQPLNTADTEEARAQNRRIELKLTER</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NVN0</accession>
    <name>A0A1M5NVN0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1618</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93591.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900281.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG93591">
        <property type="protein sequence ID" value="SHG93591"/>
        <property type="gene ID" value="SAMN05444003_1618"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="32"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG93591.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="61" mass="6225" checksum="F02190CAB51F4A2A" modified="2017-03-15" version="1">MSLGLTIISAFSGMITAMGLYFGGHVSLIEGLGAYSLTGLLVALIAATALVLDNQNPDNRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NWF4</accession>
    <name>A0A1M5NWF4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (Penicillin-binding protein 4)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1614</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase S13 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900279.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1614"/>
    <dbReference type="EnsemblBacteria" id="SHG93499">
        <property type="protein sequence ID" value="SHG93499"/>
        <property type="gene ID" value="SAMN05444003_1614"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004185">
        <property type="term" value="F:serine-type carboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000667">
        <property type="entry name" value="Peptidase_S13"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30023">
        <property type="entry name" value="PTHR30023"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02113">
        <property type="entry name" value="Peptidase_S13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00922">
        <property type="entry name" value="DADACBPTASE3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00666">
        <property type="entry name" value="PBP4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0121">Carboxypeptidase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="24"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="38"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006096"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG93499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="501" mass="54434" checksum="16569B3535595924" modified="2017-03-15" version="1">MVTRRGILAGGASMIAGSAFANAPERSLRPRSRPYDAPQSAEVSNQRPRSRPDTAQIIANAPIGGDIGFAVMDVRTGVVLDNVNGDVQLPPASVSKAVTALYSLQTLSPDYQFKTRLLAKGPISNGILTGDLILAGGGDPRLQTNDVAELAQMLKDTGITEVRGRFLVWGGALDRIEEIDESQADYLGYNPAVSGLNLNFNRVHFEWKQNGDDYDITMDARSAEYRADVTVSKMRVVERSAPVYEYTDLGDTDDWSVAKGALGDFGSRWLPVREPALYVGDVFRTFARSQGIVLPAAVRSFDAPTGTTLATLTSPILRDVAKDMLKFSTNLTAEACGMTASNQLAGESRGLRTSALGMSRWCTRQAGILPRFVDHSGLGDTSRISAMNMAALLARRGAYETLHPILKDVRIVDESRNDVPNFKGLVRAKTGTLNFVNSLAGYIKTEGGRDLAFAFFAADLEAREKGKLEGTDRPRGARTYASRARWLQQQLIQFWAKAGET</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NWG4</accession>
    <name>A0A1M5NWG4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1626</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93795.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900289.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1626"/>
    <dbReference type="EnsemblBacteria" id="SHG93795">
        <property type="protein sequence ID" value="SHG93795"/>
        <property type="gene ID" value="SAMN05444003_1626"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002656">
        <property type="entry name" value="Acyl_transf_3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043968">
        <property type="entry name" value="SGNH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01757">
        <property type="entry name" value="Acyl_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19040">
        <property type="entry name" value="SGNH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="9"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="32"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="73"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="133"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="163"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="190"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="218"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="244"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="276"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="311"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="346"/>
            <end position="365"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl_transf_3" evidence="2">
        <location>
            <begin position="5"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="domain" description="SGNH" evidence="3">
        <location>
            <begin position="403"/>
            <end position="629"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01757"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF19040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG93795.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="637" mass="71576" checksum="147E70A99B277993" modified="2017-03-15" version="1">MKYRTDIDGLRALAILLVTIFHFDLLSSGKAGFIGVDVFFVISGFLITTIIVRDLQEGCFRIGNFLYKRFRRLYSALTLTLLLYVGAGYFFLLPDMYRELGLEALLSQLYVVNFYFWRNVNYFGLQAGSVPLLHMWSLSVEEQFYFLFPVFCLLVYRVRPTWLFTAVVIVTLISFVLGVIMTPLKTWASFYLLPTRAWELLLGSILSISCLKWPPRGNWLILCGPLGLGLIAVSIFLYTPLTLIPGWFALLPSLGAVFLLLGGYNQEALVTRMMSVRALVWIGLISYPLYLVHWPIMILIKENVQTFTLEWRLTGFCLSFVLAWMIYQFVERPIRTGRWLGNPRDFLAVFGGSSAVMIATTALIFNINGLPNRFSEQVNLALASQADAATSFRNCIGLMSSIDTLCVLGDPDASPDMLVYGDSHANSYAEAIDIWLTKTGRSAFFTFSPGCLPVTGMGGAQCNLQAQNAIALLADNSFIETVMMISIWRQPYEGGVSHRGQWVSGTAAAEAFVQELEATISDFSHSGAEVVLVEPFFASPQNVPRTLAKNLAFGRDWPVHQSRREYEKTFAQLFEAFERSEELGARRISLVDQFCANDKCDAIVNGRPIFVDNNHVAGWMSQQLSEIFEIQYQLHPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NWP1</accession>
    <name>A0A1M5NWP1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 9">2-isopropylmalate synthase</fullName>
            <ecNumber evidence="5 9">2.3.3.13</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Alpha-IPM synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">Alpha-isopropylmalate synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">leuA</name>
        <name evidence="11" type="ORF">SAMN05444003_1633</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 9">Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>3-methyl-2-oxobutanoate + acetyl-CoA + H2O = (2S)-2-isopropylmalate + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:21524"/>
            <dbReference type="ChEBI" id="CHEBI:1178"/>
            <dbReference type="ChEBI" id="CHEBI:11851"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="EC" id="2.3.3.13"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 9">Amino-acid biosynthesis; L-leucine biosynthesis; L-leucine from 3-methyl-2-oxobutanoate: step 1/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 9">Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.3.3.13" evidence="5 9"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93951.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900295.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1633"/>
    <dbReference type="EnsemblBacteria" id="SHG93951">
        <property type="protein sequence ID" value="SHG93951"/>
        <property type="gene ID" value="SAMN05444003_1633"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00048">
        <property type="reaction ID" value="UER00070"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003852">
        <property type="term" value="F:2-isopropylmalate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009098">
        <property type="term" value="P:leucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01025">
        <property type="entry name" value="LeuA_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013709">
        <property type="entry name" value="2-isopropylmalate_synth_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002034">
        <property type="entry name" value="AIPM/Hcit_synth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036230">
        <property type="entry name" value="LeuA_allosteric_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005671">
        <property type="entry name" value="LeuA_bact_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000891">
        <property type="entry name" value="PYR_CT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00682">
        <property type="entry name" value="HMGL-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08502">
        <property type="entry name" value="LeuA_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00917">
        <property type="entry name" value="LeuA_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110921">
        <property type="entry name" value="SSF110921"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00973">
        <property type="entry name" value="leuA_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00815">
        <property type="entry name" value="AIPM_HOMOCIT_SYNTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00816">
        <property type="entry name" value="AIPM_HOMOCIT_SYNTH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50991">
        <property type="entry name" value="PYR_CT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="8 9" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="6 9" id="KW-0432">Leucine biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pyruvate carboxyltransferase" evidence="10">
        <location>
            <begin position="5"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000064"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003715"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004689"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009396"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012973"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022430"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01025"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG93951.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="519" mass="56620" checksum="60EED879B5524EA8" modified="2017-03-15" version="1">MTDQVLIFDTTLRDGEQSPGATMTHEEKLEIAEMLDDMGVDIIEAGFPIASEGDFAAVTEIAKQARSSTICGLARANYKDIDRCWEAVKHAKSPRIHTFIGTSPLHRAIPNLNQDEMAERIHDTVTHARNLCDNVQWSPMDATRTEEDYLCRVVEIAIKAGATTINIPDTVGYTAPVESADLIRMLIEKVPGADDIIFATHCHNDLGMATANSLAAVEGGARQIECTINGLGERAGNTALEEVVMALKVRHDIMPYATGIDTTKIMNISRRVATVSGFPVQFNKAIVGKNAFAHESGIHQDGMLKNAETFEIMRPQDVGLSGTSLPLGKHSGRAALRSKLEALGYDLADNQLKDVFVRFKDLADRKKEVYDDDLIALMRSNEDAEDRLKLKSLRVVCGTDGPQSAEMVMEIDGDEKSITTTGDGPVDATFQAVKTLVEHNARLQLYQVHAVTEGTDAQATVSVRMEEEGRIATGQSADTDTVVASAKAYINALNRLLVRREKSEPGYDTKGVSYKDVDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PK41</accession>
    <name>A0A1M5PK41_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">dTDP-4-dehydrorhamnose reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1676</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH01879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900498.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1676"/>
    <dbReference type="EnsemblBacteria" id="SHH01879">
        <property type="protein sequence ID" value="SHH01879"/>
        <property type="gene ID" value="SAMN05444003_1676"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016040">
        <property type="entry name" value="NAD(P)-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13460">
        <property type="entry name" value="NAD_binding_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD(P)-bd_dom" evidence="1">
        <location>
            <begin position="9"/>
            <end position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH01879.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="306" mass="33763" checksum="FB4B988DB55E35AE" modified="2017-03-15" version="1">MSKTVVVLGAKGRFGRNAVEAFHSADWTVIAARRNMVGSSFPSSVELRTCDVMNVSSVQKACLGADVIVNAVNPPYTDWAETVPTITENVISAAKASGASVMIPGNVYNFGVDMPSVLRTDTPQRPTTEKGRIRVAMERAYEDAAVDGVQTIVFRGGDFMEGKDTGNWFESHMVNKIETGSMVYPGNLDVVHAWAFLPDMARAMVHLADVREDLARFEDVGFDGFSLTGEQLKRLVEKASGQTLKVRSMPWGIMRLLSIFQPMIREVLEMRYLWEKPHQIDGSKLQKLAPNFRPIPIKEAIAIAIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PKB9</accession>
    <name>A0A1M5PKB9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">30S ribosomal protein S1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1690</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 5">Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the bacterial ribosomal protein bS1 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02150.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900508.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1690"/>
    <dbReference type="EnsemblBacteria" id="SHH02150">
        <property type="protein sequence ID" value="SHH02150"/>
        <property type="gene ID" value="SAMN05444003_1690"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035104">
        <property type="entry name" value="Ribosomal_protein_S1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000110">
        <property type="entry name" value="Ribosomal_S1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022967">
        <property type="entry name" value="S1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003029">
        <property type="entry name" value="S1_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10724:SF7">
        <property type="entry name" value="PTHR10724:SF7"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00575">
        <property type="entry name" value="S1"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002111">
        <property type="entry name" value="RpsA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00681">
        <property type="entry name" value="RIBOSOMALS1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00316">
        <property type="entry name" value="S1"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00717">
        <property type="entry name" value="rpsA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50126">
        <property type="entry name" value="S1"/>
        <property type="match status" value="6"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="5 7" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="S1 motif" evidence="6">
        <location>
            <begin position="26"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="domain" description="S1 motif" evidence="6">
        <location>
            <begin position="110"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="domain" description="S1 motif" evidence="6">
        <location>
            <begin position="197"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="domain" description="S1 motif" evidence="6">
        <location>
            <begin position="282"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="domain" description="S1 motif" evidence="6">
        <location>
            <begin position="369"/>
            <end position="439"/>
        </location>
    </feature>
    <feature type="domain" description="S1 motif" evidence="6">
        <location>
            <begin position="456"/>
            <end position="524"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006767"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00016782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00025604"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR002111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH02150.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="559" mass="61337" checksum="9241361490E19368" modified="2017-03-15" version="1">MAENVSMEEFEALLNESFEIDTPQEGSVVKGKVIAIEAGQAIIDVGYKMEGRVELKEFANPGEDPDLSVGDEVEVYLRAAENARGEAVISREMARREEAWDRLEKAYADEERVDGAIFGRVKGGFTVDLGGAVAFLPGSQVDVRPVRDAGPLMGLKQPFQILKMDRRRGNIVVSRRAILEESRAEQRAEVIGNLAEGQDVEGVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNHPSEILTIGETIKVQVIKINKETHRISLGMKQLQADPWDTVATKYALGTVHMGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEIDGTKRRVSLGLKQTQRNPWEVFAEQFPEGTEVEGEVKNITEFGLFVGLEGDIDGMVHLSDLTWEGRGEDVIGDFRKGDIVKAKVAEIDVEKERISLSIKALDGDPFADAVGGVKRGSIITVEVTKIEDGGIEVAYEGMTSFIRRSDLSRDRAEQRPERFGVGDKIDVRVTNIDSKTRKLGLSIKAREIAEEKEAVEQYGSSDSGASLGDILGAALKGDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PN20</accession>
    <name>A0A1M5PN20_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Fe-S-cluster-containing dehydrogenase component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1743</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03195.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900552.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1743"/>
    <dbReference type="EnsemblBacteria" id="SHH03195">
        <property type="protein sequence ID" value="SHH03195"/>
        <property type="gene ID" value="SAMN05444003_1743"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13247">
        <property type="entry name" value="Fer4_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12800">
        <property type="entry name" value="Fer4_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="12"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="73"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="106"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH03195.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="253" mass="27230" checksum="124A0C656832BF04" modified="2017-03-15" version="1">MTTLPPPSAKKLGLVIDLDTCVGCHACVVSCKGWNTENYGAPLSDQNAYSAAGQGTFLNRVHSYEVQPDQGAAQLIHFPKSCLHCEDAPCVTVCPTGASYKRQEDGIVLVNEQDCIGCGLCAWACPYGARELDAAECVMKKCTLCVDRIYNENLPEEDRQPACVRTCPAGARHFGDLGDPDSDVSQLVAERGGFDLMPEQGTKPVNKYLPPRPKDVEPEIDILAPYLEPVAQDAKGLMGWLDKALTAMPGGSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PS91</accession>
    <name>A0A1M5PS91_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Cobalamin biosynthesis protein CobD</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">cobD</name>
        <name evidence="11" type="ORF">SAMN05444003_1811</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 10">Cofactor biosynthesis; adenosylcobalamin biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 10">Cell membrane</location>
            <topology evidence="2 10">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 10">Belongs to the CobD/CbiB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04540.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900609.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1811"/>
    <dbReference type="EnsemblBacteria" id="SHH04540">
        <property type="protein sequence ID" value="SHH04540"/>
        <property type="gene ID" value="SAMN05444003_1811"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00148"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015420">
        <property type="term" value="F:ABC-type vitamin B12 transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048472">
        <property type="term" value="F:threonine-phosphate decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00024">
        <property type="entry name" value="CobD_CbiB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004485">
        <property type="entry name" value="Cobalamin_biosynth_CobD/CbiB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34308">
        <property type="entry name" value="PTHR34308"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03186">
        <property type="entry name" value="CobD_Cbib"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00380">
        <property type="entry name" value="cobD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 10" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="49"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="145"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="277"/>
            <end position="298"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00006263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH04540.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="299" mass="32840" checksum="64B601A8EB41B286" modified="2017-03-15" version="1">MILALGMILDALFGEPKWLWSKAPHPAILMGRSVGYFDRTLNSGTHRKLRGCLALVLLLLIALLLGLALQALPYKIAEVICLAILLAQRSLVDHVSAVARALRLSLNDGKRSVAMIVGRDTQDMDTSDVSRSAIESAAENLSDGVIAPIFWFFLAGLPGLLSYKITNTADSMIGYKTERHKEFGWASARFDDLLNLIPARLTALLIWLTQPRPNTIQYIRAEAPKHRSPNAGWPEAAAAYNLDVALSGPRTYDGRKVDYPFVNAGGRKTLGPYDIDAAVRLLWATWALCLFIVIAVSLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PSY9</accession>
    <name>A0A1M5PSY9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Chromosome partition protein Smc</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">smc</name>
        <name evidence="6" type="ORF">SAMN05444003_1815</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Required for chromosome condensation and partitioning.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="3">Contains large globular domains required for ATP hydrolysis at each terminus and a third globular domain forming a flexible hinge near the middle of the molecule. These domains are separated by coiled-coil structures.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the SMC family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04619.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900612.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1815"/>
    <dbReference type="EnsemblBacteria" id="SHH04619">
        <property type="protein sequence ID" value="SHH04619"/>
        <property type="gene ID" value="SAMN05444003_1815"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030261">
        <property type="term" value="P:chromosome condensation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007062">
        <property type="term" value="P:sister chromatid cohesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01894">
        <property type="entry name" value="Smc_prok"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003395">
        <property type="entry name" value="RecF/RecN/SMC_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024704">
        <property type="entry name" value="SMC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036277">
        <property type="entry name" value="SMC_hinge_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011890">
        <property type="entry name" value="SMC_prok"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02463">
        <property type="entry name" value="SMC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005719">
        <property type="entry name" value="SMC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75553">
        <property type="entry name" value="SSF75553"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02168">
        <property type="entry name" value="SMC_prok_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1 3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SMC_N" evidence="5">
        <location>
            <begin position="4"/>
            <end position="1136"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="400"/>
            <end position="419"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="466"/>
            <end position="487"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="844"/>
            <end position="893"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="184"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="632"/>
            <end position="763"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="950"/>
            <end position="991"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="468"/>
            <end position="487"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="32"/>
            <end position="39"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02463"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH04619.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="1151" mass="125623" checksum="C31604933DE94F58" modified="2017-03-15" version="1">MRFSKLRLNGFKSFVDPTDLIIADGLTGVVGPNGCGKSNLLEALRWVMGENRPTAMRGGGMEDVIFAGAATRPARNFAEVSLHIDNGERLAPAAFNDTDNLEIIRRITRDAGSAYKVGAKDVRARDVQMLFADASTGAHSPALVRQGQISELINAKPKSRRRILEEAAGISGLYQRRHEAELKLKGAETNLTRVDDVIEQLASQLSQLARQARQAARYREIGQALRKAEGMLLYRRWREADEALAAAADELRARTTAAAQAETAARQAAKQRQEFEEAMPPLREEEAVAAAVLQRLQVQRDTLNDEEARAVSTIETLQARIAQLGHDIERESGLNRDAGETIKRLEWEAEEIAKAGEGHDGRLEAAQLEASEAASKLQEREGDLSQLTEDVARLAARHQSAQRLLEDSRTTVEKNAAEAERAKAAQVEAQAHLAKAEADHEAAQEAERAAVATAEKADETLVTAEAARAETQERESEARGRRSEAEGEANALRAEVAALARLVERDTQEGGQVLDLLRVESGYEKALGAALADDLRAPAVADDAASGWAALPGYTQPPVLPDGVKSLTNYVSVPEVLVRRMGQVGLVDAEVGAKLQADLKPGQRLVSLEGDLWRWDGFRAGAEDAPSAAALRLQQLNRLVELKRDLEERNAEAIGAAQAHDALTARLSELTEADQKARQARRDADRLVAEANRAASRAEADRNLAEGKLESSGLAVKRHEDEALSARVALTEAEKAFADLGDLDAARAEVEDIKMTVEAARITMMSKRSAFDEVRREGEARLKRSQEITKEVSGWKHRLETAHKRTAELLERKETSEAELKDAIAAPEVIAAKRDELATAIDEAEDRRKAASDRLAEGDTALRDASVAERDAEREASEAREARARSEARSDAAKETVAYAAERIREAQDVTPETLLETLDVSPDDMPAAEVIENQVNQYKRQRDALGAVNLRAEEDAIEVQEEHDTLVKEKSDLEEAIAALRSGIASLNKEGRERLLTAFEQVNENFGLLFTHLFGGGEAKLVLVESDDPLEAGLEIMCQPPGKKLSTLSLLSGGEQTLTALALIFAVFLANPAPICVLDEVDAPLDDANVTRFCDLLDEMTRRTETRFLIITHHAVTMSRMDRLFGVTMGEQGVSQLVSVDLKKAEQLVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PTF1</accession>
    <name>A0A1M5PTF1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Chromate reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1825</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900880.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1825"/>
    <dbReference type="EnsemblBacteria" id="SHH04816">
        <property type="protein sequence ID" value="SHH04816"/>
        <property type="gene ID" value="SAMN05444003_1825"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005025">
        <property type="entry name" value="FMN_Rdtase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03358">
        <property type="entry name" value="FMN_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FMN_red" evidence="1">
        <location>
            <begin position="3"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH04816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="176" mass="19432" checksum="F9C880AF7A266061" modified="2017-03-15" version="1">MTTLLGISGSLRKDATNRLLIRAARDAFAPYTYIEADLRLPLYDGDLEASEGIPPSVQTLSYQIKNSDAVVISTPEYNKSISGVLKNALDWVSRTEGSPWRDKPVAIMAATAGRAGGERAQFALRLCMTPFRPKLIQGPEVLVGSNTKEFDENGKLTNERYLRAINELMEELKAEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PU61</accession>
    <name>A0A1M5PU61_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Thiol-disulfide isomerase or thioredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_1859</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05517.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900650.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1859"/>
    <dbReference type="EnsemblBacteria" id="SHH05517">
        <property type="protein sequence ID" value="SHH05517"/>
        <property type="gene ID" value="SAMN05444003_1859"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015036">
        <property type="term" value="F:disulfide oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017004">
        <property type="term" value="P:cytochrome complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013740">
        <property type="entry name" value="Redoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017937">
        <property type="entry name" value="Thioredoxin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08534">
        <property type="entry name" value="Redoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00194">
        <property type="entry name" value="THIOREDOXIN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0201">Cytochrome c-type biogenesis</keyword>
    <keyword evidence="2" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="6" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012612625" evidence="4">
        <location>
            <begin position="23"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="domain" description="Thioredoxin" evidence="5">
        <location>
            <begin position="16"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022748"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH05517.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="186" mass="20208" checksum="5D49EF41C8CBF791" modified="2017-03-15" version="1">MGYLKSALLYLSLGVLANSAVANTADLEAMREGDMRKLTFHSDPLEGSDVPFLHEDGSEMTLADYEGKHIVLNFWATWCAPCRKEMPGLSELQEELGGDDFAVVTIATGRNPRPAMEAFFDEIGVDNLPLHSDERQNLARSLGVLGLPVTMILDPEGNEVARLQGDAEWNSQSAKDILAALTSANS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PV21</accession>
    <name>A0A1M5PV21_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">OmpA-OmpF porin, OOP family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1877</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900666.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1877"/>
    <dbReference type="EnsemblBacteria" id="SHH05867">
        <property type="protein sequence ID" value="SHH05867"/>
        <property type="gene ID" value="SAMN05444003_1877"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07185">
        <property type="entry name" value="OmpA_C-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007055">
        <property type="entry name" value="BON_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006664">
        <property type="entry name" value="OMP_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006665">
        <property type="entry name" value="OmpA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036737">
        <property type="entry name" value="OmpA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04972">
        <property type="entry name" value="BON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00691">
        <property type="entry name" value="OmpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01021">
        <property type="entry name" value="OMPADOMAIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103088">
        <property type="entry name" value="SSF103088"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51123">
        <property type="entry name" value="OMPA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="OmpA-like" evidence="4">
        <location>
            <begin position="486"/>
            <end position="603"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="601"/>
            <end position="643"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="3">
        <location>
            <begin position="609"/>
            <end position="643"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH05867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="643" mass="68388" checksum="6927518EBCA49723" modified="2017-03-15" version="1">MQLSAILYRAGVFVVAALLSVLAARAAVNVVESRSVLAVQEDLIDRNYEWATVLGDGLQVILEGEAPTEASRFRAISSAGRIVDASRVIDNMTVTDSGGIDAPEFAIEILRNDSGISLIGLIPEETDREALQRRIERLADGQPVTDLLETADYPVPENWDSAVDYAVRALDELPRSKISVTSKRVSVDAISDSREEKARLETSLARNAPEGVSLAVAISAPRPVIAPFTTRFSLTEDGAQLTACAVDTPEAERRILAAASELGFAERSNCVQALGSPSRQWGEAVELAIRAVGDLGGGTVTVSDGDISIVAAEGTEQSTFDNVIGELENALPAAFAVTAELPIVVEEGEDGPPQFTATLSPEGSVQLRGRVDSDISNTVAANYASARFGQRNLTMGTRVSDDLPDGWSVRVLAGIEALSELSNGGVTVEPTTVIVRGNTGNPNASADITRLMIDKLGPTADVQIDVTYVEELDPIAGLPTPEECVADIQEATANRKILFEPSSANISADTLGVIDEIAEILKSCAELPLQIAGYTDSQGRETMNLQLSQDRARSVLEALLQRRIPTGTFTAVGFGEENPIADNDTEEGREANRRIEFSLIVPESAGEEETALEQIEADLPEDAQESEAAADDAEAQDDEDTSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PWP3</accession>
    <name>A0A1M5PWP3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glyoxylase, beta-lactamase superfamily II</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1881</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05951.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900670.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1881"/>
    <dbReference type="EnsemblBacteria" id="SHH05951">
        <property type="protein sequence ID" value="SHH05951"/>
        <property type="gene ID" value="SAMN05444003_1881"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lactamase_B" evidence="1">
        <location>
            <begin position="35"/>
            <end position="252"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH05951.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="339" mass="37821" checksum="7E9F83042B3EF003" modified="2017-03-15" version="1">MIKTPFEVPPAEGEAIEVADGVLWMRLPLPMALDHVNVFAFDDPDGWTIVDTGFASKRSRAIWEQMLAGPLGGKPVRRLIVTHHHPDHVGLAGWFIEMGAELCMPRTGWLMARMLTLDVQEVPSPEAVTFYQRAGMDAAVLEQRRVERPFNFADCVVPLPQGYTRLAEGDTIRFGGREWDIRMGNGHAPEHLTLWSRAGDLVVGGDQLLLSISPNLGVYPTEPDADPVKDWIESCEKFHLYATNEQFILAGHKVPYFGLPKRLVQMITNHHEALDRLLAFLDTPKSAGECFQPLFKRKIGSGEYGLALVEAVGHLNHLHQTGLASRTLTDEGAYAFRRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PYC8</accession>
    <name>A0A1M5PYC8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Putative pterin-4-alpha-carbinolamine dehydratase</fullName>
            <shortName evidence="4">PHS</shortName>
            <ecNumber evidence="4">4.2.1.96</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">4-alpha-hydroxy-tetrahydropterin dehydratase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Pterin carbinolamine dehydratase</fullName>
            <shortName evidence="4">PCD</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1919</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 4">
            <text>(4aS,6R)-4a-hydroxy-L-erythro-5,6,7,8-tetrahydrobiopterin = (6R)-L-erythro-6,7-dihydrobiopterin + H2O</text>
            <dbReference type="Rhea" id="RHEA:11920"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15642"/>
            <dbReference type="ChEBI" id="CHEBI:43120"/>
            <dbReference type="EC" id="4.2.1.96"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the pterin-4-alpha-carbinolamine dehydratase family.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.96" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06662.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900700.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1919"/>
    <dbReference type="EnsemblBacteria" id="SHH06662">
        <property type="protein sequence ID" value="SHH06662"/>
        <property type="gene ID" value="SAMN05444003_1919"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008124">
        <property type="term" value="F:4-alpha-hydroxytetrahydrobiopterin dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006729">
        <property type="term" value="P:tetrahydrobiopterin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00434">
        <property type="entry name" value="Pterin_4_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036428">
        <property type="entry name" value="PCD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001533">
        <property type="entry name" value="Pterin_deHydtase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12599">
        <property type="entry name" value="PTHR12599"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01329">
        <property type="entry name" value="Pterin_4a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55248">
        <property type="entry name" value="SSF55248"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0456">Lyase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001554"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH06662.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="92" mass="10311" checksum="CAF85DAB4A4BF8D9" modified="2017-03-15" version="1">MTKLSDDARSALLENGWSMVEGRDAIHKTFQFKNFVEAFGFMTKAAIWAEKLNHHPEWSNVYKTVEVTLTTHDTGGLSELDGKLAAKLDQLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PYS6</accession>
    <name>A0A1M5PYS6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_1947</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the auxin efflux carrier (TC 2.A.69) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07167.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900723.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1947"/>
    <dbReference type="EnsemblBacteria" id="SHH07167">
        <property type="protein sequence ID" value="SHH07167"/>
        <property type="gene ID" value="SAMN05444003_1947"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004776">
        <property type="entry name" value="Mem_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038770">
        <property type="entry name" value="Na+/solute_symporter_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03547">
        <property type="entry name" value="Mem_trans"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="33"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="65"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="98"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="124"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="168"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="194"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="226"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="253"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="286"/>
            <end position="306"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH07167.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="309" mass="31968" checksum="384428A6D70B9A84" modified="2017-03-15" version="1">MIEVFLQTLPFFGVIGLGYSAGRIGFFGAEATAYLTLFVFYFALSAMLFLFAARLSIADVLDWDFVFAYLSGCIVVYLIATVVSVIQGKSVAEGAVEAQCAIIGNVGFLGIPMLALLLGDAAVGLIMVVLAIDLIVFSSLIVILITGSQDGKVGLKTLRTVGLGLVKNPLILSIGSGLLFASLSITIPKPAEEFLTILGGAATPGALFAIGASLAGKSAERVSTAIWLSICKLGLHPLAVAIFALLVFDVPSYAAGVMVACAALPVAGNVFMIAQNYNVAPARVSAAILFSTVASILTLPLVIAWVTSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q0M6</accession>
    <name>A0A1M5Q0M6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1979</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07827.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1979"/>
    <dbReference type="EnsemblBacteria" id="SHH07827">
        <property type="protein sequence ID" value="SHH07827"/>
        <property type="gene ID" value="SAMN05444003_1979"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH07827.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="429" mass="46371" checksum="C634F2DF7B93AFAE" modified="2017-03-15" version="1">MADAQDSGGTNLTLSVSQTLRYSDNTELEVDANSAFSAQTNLGLSYSSQTRSEAFSFSANTGLVFSPDDGVDTGIIDPSLRFSYGRTSRTAEFSITGFYRSVELNTFIDDEDPETDLTVLDAGTRTDISGSILMAFGKDQPFGGSFTLSGSTRDYTDTTDPDLLDTTTLSANSVINLRFDDRITGRLTAGWSEVDEDGGTDQTTLRFGTGVSLLVNPTLTVGLDLNYFDIESREGGVSDREDGFGVTATASQTLPNGSLSGRVSSSIEQNGRRNSFSLSRNWELQNGQLGLTIGGSDSSDTDFSPLYGLNYNTEVVRGGNLRASLNQAYNIGADGDEAINTNLTVGYSQALSRVSDVSTSLAYRDTNALSGDIEDATRWDFNVRYRHSISRDWGLVSGYTYSFATSDGADDRDSNTIFFGVDRAFEWRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q177</accession>
    <name>A0A1M5Q177_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Transport permease protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_1971</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell inner membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the ABC-2 integral membrane protein family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07672.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900743.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1971"/>
    <dbReference type="EnsemblBacteria" id="SHH07672">
        <property type="protein sequence ID" value="SHH07672"/>
        <property type="gene ID" value="SAMN05444003_1971"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013525">
        <property type="entry name" value="ABC_2_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000412">
        <property type="entry name" value="ABC_2_transport"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01061">
        <property type="entry name" value="ABC2_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006648">
        <property type="entry name" value="DrrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00164">
        <property type="entry name" value="ABC2TRNSPORT"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51012">
        <property type="entry name" value="ABC_TM2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="21"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="55"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="89"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="114"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="140"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="167"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="198"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="221"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="domain" description="ABC2_membrane" evidence="7">
        <location>
            <begin position="7"/>
            <end position="216"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00442"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU361157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH07672.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="253" mass="27940" checksum="DE0A65AFC26F4756" modified="2017-03-15" version="1">MNFMAIASIYRFEMARFFRTITQSLVSPVLSTSLYFVVFGAAIGSRIDEVEGVSYGAFIVPGLIMLTVMTQATSNASFGIYFPKFIGTIYELLSAPISFIEVVIGYVGAAATKALFIGLVILATSFFFVDIQIAHPIAMISFLVLTCVSFALLGFIIGIWAGNFEQLQLIPLLVITPLVFLGGSFYSISMLPTVWQNITLFNPVVYLISGFRWAFFDTADVPVAISLFAIGLFTAMCLGVIWWIFKTGWRIRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q5V2</accession>
    <name>A0A1M5Q5V2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">1-deoxy-D-xylulose-5-phosphate synthase</fullName>
            <ecNumber evidence="10">2.2.1.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">1-deoxyxylulose-5-phosphate synthase</fullName>
            <shortName evidence="10">DXP synthase</shortName>
            <shortName evidence="10">DXPS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">dxs</name>
        <name evidence="12" type="ORF">SAMN05444003_2058</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>D-glyceraldehyde 3-phosphate + H(+) + pyruvate = 1-deoxy-D-xylulose 5-phosphate + CO2</text>
            <dbReference type="Rhea" id="RHEA:12605"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57792"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="EC" id="2.2.1.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="10">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </cofactor>
        <text evidence="10">Binds 1 thiamine pyrophosphate per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 10">Metabolic intermediate biosynthesis; 1-deoxy-D-xylulose 5-phosphate biosynthesis; 1-deoxy-D-xylulose 5-phosphate from D-glyceraldehyde 3-phosphate and pyruvate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3 10">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 10">Belongs to the transketolase family. DXPS subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.2.1.7" evidence="10"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900815.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2058"/>
    <dbReference type="EnsemblBacteria" id="SHH09306">
        <property type="protein sequence ID" value="SHH09306"/>
        <property type="gene ID" value="SAMN05444003_2058"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00064">
        <property type="reaction ID" value="UER00091"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008661">
        <property type="term" value="F:1-deoxy-D-xylulose-5-phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052865">
        <property type="term" value="P:1-deoxy-D-xylulose 5-phosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016114">
        <property type="term" value="P:terpenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009228">
        <property type="term" value="P:thiamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02007">
        <property type="entry name" value="TPP_DXS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00315">
        <property type="entry name" value="DXP_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005477">
        <property type="entry name" value="Dxylulose-5-P_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000399">
        <property type="entry name" value="TPP-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009014">
        <property type="entry name" value="Transketo_C/PFOR_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005475">
        <property type="entry name" value="Transketolase-like_Pyr-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020826">
        <property type="entry name" value="Transketolase_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033248">
        <property type="entry name" value="Transketolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005474">
        <property type="entry name" value="Transketolase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43322">
        <property type="entry name" value="PTHR43322"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13292">
        <property type="entry name" value="DXP_synthase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02779">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02780">
        <property type="entry name" value="Transketolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00861">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52922">
        <property type="entry name" value="SSF52922"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00204">
        <property type="entry name" value="dxs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00187">
        <property type="entry name" value="TPP_ENZYMES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00801">
        <property type="entry name" value="TRANSKETOLASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00802">
        <property type="entry name" value="TRANSKETOLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 10" id="KW-0414">Isoprene biosynthesis</keyword>
    <keyword evidence="6 10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 10" id="KW-0784">Thiamine biosynthesis</keyword>
    <keyword evidence="8 10" id="KW-0786">Thiamine pyrophosphate</keyword>
    <keyword evidence="4 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TRANSKETOLASE_1" evidence="11">
        <location>
            <begin position="32"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="region of interest" description="Thiamine pyrophosphate binding" evidence="10">
        <location>
            <begin position="117"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="region of interest" description="Thiamine pyrophosphate binding" evidence="10">
        <location>
            <begin position="149"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="76"/>
        </location>
        <ligand>
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="148"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="177"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="287"/>
        </location>
        <ligand>
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="369"/>
        </location>
        <ligand>
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS00801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHH09306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="638" mass="67918" checksum="36EDAD60EB9AE232" modified="2017-03-15" version="1">MTNTPFLDRINGPADLKGFADRDLAALSDELRQEVIQAVSQTGGHLGSSLGVVELSVAIHAVFDTPRDKLIWDVGHQCYPHKILTGRRDRINTLRQERGLSGFTKRSESEYDPFGAAHSSTSISAALGFTVGRDMGQPTGDAIAVIGDGSISAGMAYEAMNNAGAEGRRLFVILNDNEMSIAPPVGAMSKYLSGLYASPFGEMQKMAEGFEAALPGPLRDHARRARQLVTGATQGGSGTLFEELGFSYVGPIDGHDMSQLLPVLRAVRTRAVGPVLIHVCTVKGKGYAPAENSADKYHGVSKFDVASGTQNKSRPNAPSYTKVFGEALLKEAEDDPSIVAVTAAMPSGTGVNIMADRYRNRVFDVGIAEQHGVTFAAGMAASGLKPFCAIYSTFLQRGYDQIVHDVALQNLPVRFAIDRAGLVGADGATHAGAFDIGYLAALPNMVVMAAGDEAELMHMVRTSAAYDEGPSAFRYPRGEGEGVLMPERGEILEIGKGRIVEDGEDVAVLSFGGHLGECRKAVELLKQQGLNPTLADARFAKPLDTNMLRQLVKSHKALVTVEQGSRGGFGAMVLHELANARLLDGSCQVRTMTLPDRFIDQASPDAMYMDAGMTAVDIAAMAAEALGRKVTDETLQIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q698</accession>
    <name>A0A1M5Q698_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">3-hydroxyethyl bacteriochlorophyllide a dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2069</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09528.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900825.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2069"/>
    <dbReference type="EnsemblBacteria" id="SHH09528">
        <property type="protein sequence ID" value="SHH09528"/>
        <property type="gene ID" value="SAMN05444003_2069"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036354">
        <property type="term" value="F:2-desacetyl-2-hydroxyethyl bacteriochlorophyllide a dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005903">
        <property type="entry name" value="BchC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01202">
        <property type="entry name" value="bchC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ADH_N" evidence="1">
        <location>
            <begin position="27"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH09528.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="312" mass="32731" checksum="8EFC0173D8C37C0C" modified="2017-03-15" version="1">MQTKAVVLSEPGKIGLQSVGITSPTPQDIVVEIRHSGISTGTEKLFWSGEMPPFPGMGYPLIPGYEASGEVVEAGSDSGFRVGETVFVPGANCYDGAYGLFGAASKTLITPASRVTRIDGATGPAGALLALAATARHAMAGSGKSVPDLIVGHGVLGRLLARLTIAAGAPAPTVWEIDPRRTGDAEGYSVTNADEDERRDYTSIYDASGQCDLLNQLVGRMAKGGEVVLAGFYKEPLHFAFPPAFMKEARFRIAAEWDADDMTATRALVEGGTLRLDDLITHTADAADAASAYETAFTDADCLKMILNWGTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QJ65</accession>
    <name>A0A1M5QJ65_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">Ferric uptake regulation protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">fur</name>
        <name evidence="6" type="ORF">SAMN05444003_2142</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Acts as a global negative controlling element, employing Fe(2+) as a cofactor to bind the operator of the repressed genes.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the Fur family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH13896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900949.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2142"/>
    <dbReference type="EnsemblBacteria" id="SHH13896">
        <property type="protein sequence ID" value="SHH13896"/>
        <property type="gene ID" value="SAMN05444003_2142"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd07153">
        <property type="entry name" value="Fur_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002481">
        <property type="entry name" value="FUR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043135">
        <property type="entry name" value="Fur_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33202">
        <property type="entry name" value="PTHR33202"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01475">
        <property type="entry name" value="FUR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0678">Repressor</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="5" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="4 5" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002997"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007957"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00020910"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU364037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH13896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="133" mass="14593" checksum="F252D4C973E91396" modified="2017-03-15" version="1">MGQRGEQLQAEMLTIMDQNSGPISAYDLLEKLRSSNAKMAPTTVYRALASLTEQGRIHRLESMNAYVPCQHDHHHQSSILSICDDCGSVEENVAPDVLNQLETVVGENGFSAKRHVIEVHGLCGTCDSEEAVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QMP3</accession>
    <name>A0A1M5QMP3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Malate dehydrogenase (Oxaloacetate-decarboxylating)(NADP+)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">SAMN05444003_2213</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="4">In the C-terminal section; belongs to the phosphate acetyltransferase and butyryltransferase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">In the N-terminal section; belongs to the malic enzymes family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15384.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901065.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2213"/>
    <dbReference type="EnsemblBacteria" id="SHH15384">
        <property type="protein sequence ID" value="SHH15384"/>
        <property type="gene ID" value="SAMN05444003_2213"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004471">
        <property type="term" value="F:malate dehydrogenase (decarboxylating) (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006108">
        <property type="term" value="P:malate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05311">
        <property type="entry name" value="NAD_bind_2_malic_enz"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10380">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10750">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10950">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046346">
        <property type="entry name" value="Aminiacid_DH-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015884">
        <property type="entry name" value="Malic_enzyme_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012301">
        <property type="entry name" value="Malic_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037062">
        <property type="entry name" value="Malic_N_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012302">
        <property type="entry name" value="Malic_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045213">
        <property type="entry name" value="Malic_NAD-bd_bact_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012188">
        <property type="entry name" value="ME_PTA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042113">
        <property type="entry name" value="P_AcTrfase_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042112">
        <property type="entry name" value="P_AcTrfase_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002505">
        <property type="entry name" value="PTA_PTB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00390">
        <property type="entry name" value="malic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03949">
        <property type="entry name" value="Malic_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01515">
        <property type="entry name" value="PTA_PTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036684">
        <property type="entry name" value="ME_PTA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01274">
        <property type="entry name" value="malic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00919">
        <property type="entry name" value="Malic_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53223">
        <property type="entry name" value="SSF53223"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00331">
        <property type="entry name" value="MALIC_ENZYMES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="10" id="KW-0521">NADP</keyword>
    <keyword evidence="6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="malic" evidence="12">
        <location>
            <begin position="20"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="domain" description="Malic_M" evidence="11">
        <location>
            <begin position="165"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="8">
        <location>
            <position position="96"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="78"/>
            <end position="85"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="138"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="139"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="164"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="289"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007686"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00008756"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR036684-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR036684-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR036684-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM01274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHH15384.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="751" mass="80897" checksum="F8290DEF51BBD4BE" modified="2017-03-15" version="1">MKNSKMTREDALAFHLNPTPGKWEVRATVPMTTQRDLSLAYSPGVAVPCEEIEEKPSTAYDYTNKGNLVAVISNGTAVLGLGNLGALASKPVMEGKSVLFKRFADVNSIDVELDTEDVDAFCNAVKLMGPTFGGINLEDIKAPECFMIEQRLKEEMDIPVFHDDQHGTAVICAAGLINALHLSGKKIEDVKIVLNGAGAAGIACLELLKAMGAKHNNCIMCDTKGVIYQGRTEGMNQWKSAHAASTEARSLDDAMKGADVFLGVSAKGAVTQEMVSNMAPNPVIFAMANPDPEITPEDAQAVREDAIVATGRSDYPNQVNNVLGFPYLFRGALDIHARAINDEMKIACAHALANLAREDVPDEVAMAYGTKLSFGRDYIIPTPFDPRLIHRIPPAVAKAGMDTSVARRPIVDMEGYELSLKSRMDPTASILRNLNTRARSAQSTVVFAEGDDPRVIRAAVLYQRSGLGKALLVGREGDVAAKLTDLGLADAIQEIEVVNAANTEHLEDYKSFLYERLQRKGFDAADVHRLAARDRHVFASLMLAHGHADGMVTGATRKSAHVLELINHVFDATPQSGAVGVSAVLHNGRIVLVSDTLVHEWPDEKDLADIAERGASVARNLGLEPRVAFLSFSTFGYPVSERAEKMNLAPNILDERNVDFEYEGEMTVDVALNAAAMEQYPFSRLSGPANVLVVPARHSASISVKLMQEMAGATVIGPILSGIDKPVQICSTVSTVNDIMNMAVLAACRVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QQV8</accession>
    <name>A0A1M5QQV8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Alcohol dehydrogenase, class IV</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2271</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16495.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901150.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2271"/>
    <dbReference type="EnsemblBacteria" id="SHH16495">
        <property type="protein sequence ID" value="SHH16495"/>
        <property type="gene ID" value="SAMN05444003_2271"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016616">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001670">
        <property type="entry name" value="ADH_Fe/GldA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018211">
        <property type="entry name" value="ADH_Fe_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039697">
        <property type="entry name" value="Alcohol_dehydrogenase_Fe"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11496">
        <property type="entry name" value="PTHR11496"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00465">
        <property type="entry name" value="Fe-ADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00913">
        <property type="entry name" value="ADH_IRON_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00060">
        <property type="entry name" value="ADH_IRON_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fe-ADH" evidence="2">
        <location>
            <begin position="18"/>
            <end position="378"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00465"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH16495.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="391" mass="42179" checksum="1E528C1D85C65F7B" modified="2017-03-15" version="1">MNQQDILAPKDWSFPIPIAYGAGRLSEIGQKCSSLGISYPLIVTDRGSQDLPFIRELQNLLSTSGLRSGLFCEISPNPRDDEIGAGREFYKTKGHDAIIAIGGGSAMDGGKSICLTANNEISLWDFEFEKPTPQIPIDQRFPKLITIPTTAGTGAETESTAMVTDVAKGMKFCIWHPDLKPSLALLDPELTRGLPPHLTAWTGADAMTHAIEAYLVPGFEPLCDGLALESLALISQWLPVAVREPDNMAARSAMLVGSCLAGISFLKGLGLVHAISHMIGAEYNTQHGLTNAIILPVVLRFNTPGMDNKVKRMSDAMGLDDSSTKTFNLAVEKILNEIKIPTSLSAIGVPIDCAERIARKAMQDSAATTNPRLASLDELRELTEQAIKKAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QRZ4</accession>
    <name>A0A1M5QRZ4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">VPLPA-CTERM protein sorting domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2273</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16540.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2273"/>
    <dbReference type="EnsemblBacteria" id="SHH16540">
        <property type="protein sequence ID" value="SHH16540"/>
        <property type="gene ID" value="SAMN05444003_2273"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012590103" evidence="2">
        <location>
            <begin position="22"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="235"/>
            <end position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH16540.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="261" mass="26276" checksum="71596C0D0D7FE1DA" modified="2017-03-15" version="1">MKHIWMSILLTALLAGPSTGATIIVGGSNGTVASLDTSANTILGSYDAGPAWFDIAVNNTGDVYGTTGQALYSIDVANEAMGLRLGNHSFVNSLAFDDSDVLFGAGGGNLYTLDLATGSSNLVGAVGGNFNSSGDIAFDQKGKLFASSLSGCEGGSDCLFSIDTSTGVGSAIGPIGYNNVYGLARIGGTLFGLTEANQLLSIDTLSGSGTLLGSYSINGLTYGAAVPSNVSVVPVPASILLLLAGIGTLCTLRLQPRSRKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QVC2</accession>
    <name>A0A1M5QVC2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2345</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18104.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901273.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH18104">
        <property type="protein sequence ID" value="SHH18104"/>
        <property type="gene ID" value="SAMN05444003_2345"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="SSF51126"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013382208" evidence="2">
        <location>
            <begin position="24"/>
            <end position="1013"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="18"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH18104.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="1013" mass="108505" checksum="04075647D322F182" modified="2017-03-15" version="1">MYWTFIFGLFGALMAAASGSNNSSDEQTSIRNAEEPPEQDVADTKQTKVAARTVAPDQEPQVSKSGSTKAKETQTEKTPTEVSEVESPPQTGTPTEVPEPGPVTLTQDVTAEVIAGRVTKFDLSEVDDVQSVKVLSGPEAGNLTVNPDNTLSLVLTGSEHTGALNFSYEVTHSNGDKTVFDADVDAIAGPQEKGWGTGEFYVLQEDDNGDMIIEHGDNHRKVFISNDDDALSRADIAALEGMKVEQITGLWLSQNPEYGGSEGLALKPDAGMELWYSITGSNQGPTSNWLLFERGFEYDDLDRLVARGSTGESELHPQLIGAYGEGDKPVLHTVLNMYQEWSDNTVIQGVALPEGAKLIWGENIILDNVSMSNEELTVKGVDAFTLRNSDITDVFRDEPVRDTDIWEPAYNRISGSFFDELDGLLLEGNFFDHNGWADGYSYDMSTDNPQSPSFYNHNIYIQNTVTDVTLRDNITMRASSFGATIRPGAFVEDNLFLDNNAALNALGGDYKDAGFIGNYSLLNGNVITSGAHKTVDDKEGALTMGAGIWGRMTTLLDNIVTHLSDPNNPADGADKEFAHFAVRTPDGSGFYDDTMIYNWSAERGNSEENADRNIEGLDKDVLDDTTIQLFTAALLGQPNATIDDLSDYLRQQYQGDQDQVVTADTIVDFFKAGFGLDVDVRDDAQTLRFVPNDLGDGVRWDNRLNWSTDDLPGTRDGDSVDLGGNWVNYGGTTTLEDLDFGDGGKLAVGNGYLEINDHIAVGDSGAEISIERSGQFWTNGYTDLDTLEINVAGGRFANTGLFAGSSELTVSDNAQALLATDGADFIVRDGSGLAINGSDVKVGFDGEAGGTGVLLFSDNATLSFKADEDGFGTIREFRSGHFDQEGSDIESGVNLGDVNLELDVSAIAGGGATTETLIRVDEVTGAIGSVDVVGLASNQNATVFVDYSNDIVTLTLGAKGSGSGNVSIETAGNETQSNSSSALWASLTNGHGIYADDPASSIPSEEDEDALVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QWR7</accession>
    <name>A0A1M5QWR7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Hydroxymethylpyrimidine kinase /phosphomethylpyrimidine kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2340</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine + ATP = 4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine + ADP</text>
            <dbReference type="Rhea" id="RHEA:19893"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57841"/>
            <dbReference type="ChEBI" id="CHEBI:58354"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.7"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>4-amino-5-hydroxymethyl-2-methylpyrimidine + ATP = 4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:23096"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16892"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58354"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.49"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Cofactor biosynthesis; thiamine diphosphate biosynthesis; 4-amino-2-methyl-5-diphosphomethylpyrimidine from 5-amino-1-(5-phospho-D-ribosyl)imidazole: step 3/3.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18003.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901265.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2340"/>
    <dbReference type="EnsemblBacteria" id="SHH18003">
        <property type="protein sequence ID" value="SHH18003"/>
        <property type="gene ID" value="SAMN05444003_2340"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00060">
        <property type="reaction ID" value="UER00138"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008972">
        <property type="term" value="F:phosphomethylpyrimidine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009228">
        <property type="term" value="P:thiamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009229">
        <property type="term" value="P:thiamine diphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd01169">
        <property type="entry name" value="HMPP_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045029">
        <property type="entry name" value="HMP/HMP-P_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004399">
        <property type="entry name" value="HMP/HMP-P_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013749">
        <property type="entry name" value="PM/HMP-P_kinase-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20858">
        <property type="entry name" value="PTHR20858"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08543">
        <property type="entry name" value="Phos_pyr_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="SSF53613"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00097">
        <property type="entry name" value="HMP-P_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Phos_pyr_kin" evidence="4">
        <location>
            <begin position="12"/>
            <end position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00000565"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF08543"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH18003.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="265" mass="27165" checksum="2EC3BB28119E51DB" modified="2017-03-15" version="1">MVAKALTIAGSDSGGGAGIQADLKAFSANGVFGTSALTAITAQNTMGVTAVHPIPVDVVGAQIEAVLTDIRPDAIKIGMLFSPELIETVAKALADYDGPVVLDPVMIAKSGDALLQDEAVDALKSIILPRADLLTPNLPEAARILETSEAATEADALSQAEALRALGPKAILMKGGHAEGDTCTDLLLTKAGSHEFSATRINTRNTHGTGCTYSSTIAANLAKGVDMVTAVETAHSYLHAAIKAADDIDIGAGHGPVHHFHGMWS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QX20</accession>
    <name>A0A1M5QX20_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pimeloyl-ACP methyl ester carboxylesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2374</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18675.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901317.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2374"/>
    <dbReference type="EnsemblBacteria" id="SHH18675">
        <property type="protein sequence ID" value="SHH18675"/>
        <property type="gene ID" value="SAMN05444003_2374"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000639">
        <property type="entry name" value="Epox_hydrolase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00111">
        <property type="entry name" value="ABHYDROLASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00412">
        <property type="entry name" value="EPOXHYDRLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="32"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH18675.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="314" mass="35186" checksum="DB6D807217C277E7" modified="2017-03-15" version="1">MTTLTDFPSPSLIALTSIELEVYEVGRENKGNPIVLCHGWPEHAYSWRHQMPALAAAGYHVIVPNQRGYGNSSRPEDVTEYDIARLTGDLAALLDHFGYDDAVFVGHDWGANVVWSMALLHPNRVKKIINLALPYQARTPMPWIEFMETLLGADNYFVHFNHKPGVADAVFDKNARQFLSNLFRKNLPALPPEPGMMMINLAQAEEPLGEPVMSDAELDVFVASFEATGFTGSINWYRNIDRNWHLLADADPIVRQPALMIYGTQDMIPPSENLADFVPHVEVVNLESGHWIQQEKPQETTDAILGWLSLDLAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-09-29" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QX38</accession>
    <name>A0A1M5QX38_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2346</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18123.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH18123">
        <property type="protein sequence ID" value="SHH18123"/>
        <property type="gene ID" value="SAMN05444003_2346"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040632">
        <property type="entry name" value="Sulfotransfer_4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17784">
        <property type="entry name" value="Sulfotransfer_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH18123.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="273" mass="31589" checksum="9196366FCE835DDB" modified="2017-03-15" version="1">MKVSDLSRLSRRYYRHYAKPRRVGPRIFVLGASKTGTHTLAHMFDDKLRTGHEDDAERIIKAYLKANLSRDTSGLLRLLRTRDRIRNLKIDSSSVNVYVLKEILELFPDSKFILTVREPTIWLRSMLDHSMARPVSPTWQEFRTYRFGERAGHPVEEQALEQAGMYPVARYLDYWSYSVAMALDQTPQDRLLVVPTNDLGKRVAEIAAFCDLDSENTSPTSTHSYPNHFRSNLLQTLPAGYLEKLVEREVGDLARRIWPEWDPKQATEHALNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QXU6</accession>
    <name>A0A1M5QXU6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2376</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18708.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901320.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2376"/>
    <dbReference type="EnsemblBacteria" id="SHH18708">
        <property type="protein sequence ID" value="SHH18708"/>
        <property type="gene ID" value="SAMN05444003_2376"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021251">
        <property type="entry name" value="DUF2793"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10983">
        <property type="entry name" value="DUF2793"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH18708.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="247" mass="27472" checksum="CFDA4BFD0EEB1DF7" modified="2017-03-15" version="1">MSENSPRLDLPYIQPSQAQKHVTHNEAVEILDTIVQMKLEDIDVSNPPVLPAEGQSWALSAAPTGAWTGEAGAIVTRCNNGWLFIEPAEGWTAWVGSAGRLHQFDGTSWVTLQAEMDLKNVVGVGGACHHGLRRRIVHDRRSQPVRDVLLAWAVNPVLNLAELRGRAAAWLRKNRRSLRRIQSVIWAHLRSFAATESNVLFAQTILHSAAKPQISTGTLRFILQFFAMESAWFIGLQIRGIFQDSDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RBB8</accession>
    <name>A0A1M5RBB8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Enoyl-CoA hydratase/carnithine racemase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2489</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23595.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901567.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2489"/>
    <dbReference type="EnsemblBacteria" id="SHH23595">
        <property type="protein sequence ID" value="SHH23595"/>
        <property type="gene ID" value="SAMN05444003_2489"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018376">
        <property type="entry name" value="Enoyl-CoA_hyd/isom_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00166">
        <property type="entry name" value="ENOYL_COA_HYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU003707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH23595.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="200" mass="20982" checksum="1B5C3AD98B280E08" modified="2017-03-15" version="1">MIKQEIEGNLTILTLDRPDKANALTADMLAALRDAVRAASDQNALILTGVGKVFSAGADLEAAKAGLATSPLWEELSAAIAEYRGLSIAALNGTVAGGAFGMVLTCDLRIAVPSAKFFYPVMKLGFLPQPSDPVRLRMLVGSQSAKRILMAGEKLTAQEALDINLVDHLVECDVVAKAKDLACDALAAKHSHVAAIKAMI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RCC9</accession>
    <name>A0A1M5RCC9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Haloalkane dehalogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2506</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23931.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2506"/>
    <dbReference type="EnsemblBacteria" id="SHH23931">
        <property type="protein sequence ID" value="SHH23931"/>
        <property type="gene ID" value="SAMN05444003_2506"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000639">
        <property type="entry name" value="Epox_hydrolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00412">
        <property type="entry name" value="EPOXHYDRLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012409458" evidence="1">
        <location>
            <begin position="26"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="domain" description="AB hydrolase-1" evidence="2">
        <location>
            <begin position="51"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH23931.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="313" mass="34980" checksum="1CA584FFBD316D71" modified="2017-03-15" version="1">MKRRTFLQTTAAAATMAAFGTTASAAAPFEKKYANVLGHKMAYVNEGEGRPVVFLHGNPASSYLWRNIIPYVTDRYRAIAPDLMGMGDSDKPAMTETYQESAEYLHAFLDSLDLQDAILVIHDWGSALGWHYARTRPDRISAVAFMEAMAPPFMPLNDVSVLAPEMVEFMMGIRTPGIGEKMILEQNLFLDGFMRHDSGGMSEETMAEYNRPFPTPESRQIILDWPREIPMGGSPSDVHAIVQANSDFVAQSTFPKLMFHVTPGAVITEYAAKWIKKNLTNIESIYLGEGGHFIQEQYPDEIGRGLADWLFRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RCM9</accession>
    <name>A0A1M5RCM9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Alkyl hydroperoxide reductase C</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Peroxiredoxin</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Thioredoxin peroxidase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_2500</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the peroxiredoxin family. Prx6 subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23809.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901586.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2500"/>
    <dbReference type="EnsemblBacteria" id="SHH23809">
        <property type="protein sequence ID" value="SHH23809"/>
        <property type="gene ID" value="SAMN05444003_2500"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008379">
        <property type="term" value="F:thioredoxin peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03016">
        <property type="entry name" value="PRX_1cys"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000866">
        <property type="entry name" value="AhpC/TSA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024706">
        <property type="entry name" value="Peroxiredoxin_AhpC-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019479">
        <property type="entry name" value="Peroxiredoxin_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045020">
        <property type="entry name" value="PRX_1cys"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10417">
        <property type="entry name" value="1-cysPrx_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00578">
        <property type="entry name" value="AhpC-TSA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000239">
        <property type="entry name" value="AHPC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0049">Antioxidant</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin" evidence="10">
        <location>
            <begin position="3"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="active site" description="Cysteine sulfenic acid (-SOH) intermediate" evidence="9">
        <location>
            <position position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009796"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00017462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00025719"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00032077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00032824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000239-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH23809.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="217" mass="23490" checksum="B7FB697F822B24F4" modified="2017-03-15" version="1">MSLRINDTIPNLTVETDQGTFALHDWIGDSWAILFSHPKDFTPVCTTEFGAVAQLSEEWAKRGTKVIGVSVDGVEDHKKWKGDIEKVAGTAAGFPIIADDGLEVSKAFDMLPAEAYLPDGRTPADSATVRSVFIIGPDKQLKLSMTYPMTVGRNFAEVLRALDGLQTSTGKGVATPANWNVGDDVIIPATVSNEDAAEKFGEFTTVLPYLRTTKLKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RJ59</accession>
    <name>A0A1M5RJ59_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Ribosomal silencing factor RsfS</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">rsfS</name>
        <name evidence="3" type="ORF">SAMN05444003_2615</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Interacts with ribosomal protein L14 (rplN).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the Iojap/RsfS family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26176.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2615"/>
    <dbReference type="EnsemblBacteria" id="SHH26176">
        <property type="protein sequence ID" value="SHH26176"/>
        <property type="gene ID" value="SAMN05444003_2615"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042256">
        <property type="term" value="P:mature ribosome assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090071">
        <property type="term" value="P:negative regulation of ribosome biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017148">
        <property type="term" value="P:negative regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01477">
        <property type="entry name" value="Iojap_RsfS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004394">
        <property type="entry name" value="Iojap/RsfS/C7orf30"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21043">
        <property type="entry name" value="PTHR21043"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00090">
        <property type="entry name" value="rsfS_iojap_ybeB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0678">Repressor</keyword>
    <keyword evidence="2" id="KW-0810">Translation regulation</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH26176.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="121" mass="13428" checksum="E29144B78D345A39" modified="2017-03-15" version="1">MELTPQDVTSEKLLAAILKSLDDDKAEDVVQIELRGKSEMGDYMVIASGRSSRQVASIAEKLVERVKQTFGVISKIEGKDAGDWVLIDTGDVIVHIFRPEVREFYQLEKMWMPATGAVAST</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RM18</accession>
    <name>A0A1M5RM18_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Catechol 2,3-dioxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2665</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH27364.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901840.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH27364">
        <property type="protein sequence ID" value="SHH27364"/>
        <property type="gene ID" value="SAMN05444003_2665"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="4"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH27364.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="123" mass="13476" checksum="1F869BA57B2FBEB3" modified="2017-03-15" version="1">MKLGAFSVSLNVKDVAVSRDFYAHLGFEEFGGNLEHGYLILKNGETLLGLFGGFIEQNTLTFNPGWDANAQEVAEFDDVREIQKRLKAAGIALRDECDEDGSGPAHISLLDPDGNAILIDQHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RMQ7</accession>
    <name>A0A1M5RMQ7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">50S ribosomal protein L7/L12</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rplL</name>
        <name evidence="7" type="ORF">SAMN05444003_2676</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer. Part of the ribosomal stalk of the 50S ribosomal subunit. Forms a multimeric L10(L12)X complex, where L10 forms an elongated spine to which 2 to 4 L12 dimers bind in a sequential fashion. Binds GTP-bound translation factors.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the bacterial ribosomal protein bL12 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH27597.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901858.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2676"/>
    <dbReference type="EnsemblBacteria" id="SHH27597">
        <property type="protein sequence ID" value="SHH27597"/>
        <property type="gene ID" value="SAMN05444003_2676"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00387">
        <property type="entry name" value="Ribosomal_L7_L12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.710">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00368">
        <property type="entry name" value="Ribosomal_L7_L12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000206">
        <property type="entry name" value="Ribosomal_L7/12"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014719">
        <property type="entry name" value="Ribosomal_L7/12_C/ClpS-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013823">
        <property type="entry name" value="Ribosomal_L7/L12_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008932">
        <property type="entry name" value="Ribosomal_L7/L12_oligo"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036235">
        <property type="entry name" value="Ribosomal_L7/L12_oligo_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45987">
        <property type="entry name" value="PTHR45987"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00542">
        <property type="entry name" value="Ribosomal_L12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16320">
        <property type="entry name" value="Ribosomal_L12_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48300">
        <property type="entry name" value="SSF48300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54736">
        <property type="entry name" value="SSF54736"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00855">
        <property type="entry name" value="L12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 7" id="KW-0689">Ribosomal protein</keyword>
    <feature type="domain" description="Ribosomal_L12_N" evidence="6">
        <location>
            <begin position="5"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="domain" description="Ribosomal_L12" evidence="5">
        <location>
            <begin position="60"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007197"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF16320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH27597.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="125" mass="12717" checksum="DD2A8FF80DB01D03" modified="2017-03-15" version="1">MADLKKLAEEIVGLTLLEAQELKTILKDEYGIEPAAGGAVMVAGAAGGDAGAAAEEKTEFDVVLKNAGASKINVIKEVRGITGLGLKEAKDLVEAGGKIKEGVDKAEAEDIKGKLEAAGAEVELA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RU27</accession>
    <name>A0A1M5RU27_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Short C-terminal domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2697</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH29822.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901942.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH29822">
        <property type="protein sequence ID" value="SHH29822"/>
        <property type="gene ID" value="SAMN05444003_2697"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018649">
        <property type="entry name" value="SHOCT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09851">
        <property type="entry name" value="SHOCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="43"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="domain" description="SHOCT" evidence="2">
        <location>
            <begin position="96"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09851"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH29822.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="125" mass="13969" checksum="EAECE19B4E310B85" modified="2017-03-15" version="1">MGFFDLIWSIFLIFLMVAWFWVLIAVVADIFRSKDLGGFAKALWIGFVIIIPWLGVLVYVIARGDKMQEHNAQAMSDMEAAQKDYIRSVATTSPADELERLAGLKEKGVLTEEEFAAQKAKVLAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RYP6</accession>
    <name>A0A1M5RYP6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sugar or nucleoside kinase, ribokinase family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2770</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31472.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902052.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2770"/>
    <dbReference type="EnsemblBacteria" id="SHH31472">
        <property type="protein sequence ID" value="SHH31472"/>
        <property type="gene ID" value="SAMN05444003_2770"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011611">
        <property type="entry name" value="PfkB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00294">
        <property type="entry name" value="PfkB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="SSF53613"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PfkB" evidence="1">
        <location>
            <begin position="44"/>
            <end position="314"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH31472.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="329" mass="34783" checksum="5BB193304FD19472" modified="2017-03-15" version="1">MSNFDVIGIGNAIVDVISPAEDMFLDQMGIEKGIMQLVEKDRAEVLYAAMRDRVETPGGSVANTIAGLGGLGLTTAFIGKVKDDALGRFYAKGMEDAGTAFPNAPVQNADAPTSRSMIFVSPDGERSMNTYLGAGADLNSGDVSGDLFGGSKFLFLEGYLFDKDDGKTAFSEAARLMHAAGGKSGITLSDPFCADRHREGFQRLIKEDLDFTLGNEDEWKTLYETDDLDAALAQGSAACDTIACTRSGDPILLIRNGERVEVPVTSITPVDATGAGDQFATGFIYGMATGQPLDVCGRMGSVAAAEVIRHIGPRPQADLKVLFKDAGLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S4S1</accession>
    <name>A0A1M5S4S1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Predicted DNA-binding protein, contains Ribbon-helix-helix (RHH) domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2853</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33445.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902179.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH33445">
        <property type="protein sequence ID" value="SHH33445"/>
        <property type="gene ID" value="SAMN05444003_2853"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3990.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027373">
        <property type="entry name" value="RHH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038268">
        <property type="entry name" value="RHH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13467">
        <property type="entry name" value="RHH_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RHH_4" evidence="1">
        <location>
            <begin position="16"/>
            <end position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH33445.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="123" mass="14240" checksum="405CA65D814B481A" modified="2017-03-15" version="1">MCQLFIDADPALWASHTRSFRMDGMVTSVRMEDLFWRTLETISARDDLSVPQLLHRLYNESLDAEHDLGNFTSFLRVCCLRYLDLQMRGLIPIEERVQLSQLPASDILSIEMEARNKAAPRLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S685</accession>
    <name>A0A1M5S685_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Short chain enoyl-CoA hydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2867</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33788.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902199.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2867"/>
    <dbReference type="EnsemblBacteria" id="SHH33788">
        <property type="protein sequence ID" value="SHH33788"/>
        <property type="gene ID" value="SAMN05444003_2867"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH33788.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="255" mass="27199" checksum="C98DE446269B94F0" modified="2017-03-15" version="1">MSQIALTERGNAAVLTLHNEAKLNALTVIMLKELEGHLSDIESRSDIRALIVTGAGPKAFCCGADIAEWGELRPEEFARFWVHGGHRIFDRLARFSKPTIGALNGHAFGGGLELAACCDIRVMTPKATLVLPEAKVGIVPGWSGTQRLARLLPEPVLKEMALFARRLTAERAMNLGFVAEIDDDPLAAALGIVEDLADVSPRANELAKAMIHGAVGEDTGAVIEALGSAAAAASADRYEGVHAFLDKRKPSFEGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SBA9</accession>
    <name>A0A1M5SBA9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Carbohydrate ABC transporter ATP-binding protein, CUT1 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2884</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH35922.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902260.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH35922">
        <property type="protein sequence ID" value="SHH35922"/>
        <property type="gene ID" value="SAMN05444003_2884"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008643">
        <property type="term" value="P:carbohydrate transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03301">
        <property type="entry name" value="ABC_MalK_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015855">
        <property type="entry name" value="ABC_transpr_MalK-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013611">
        <property type="entry name" value="Transp-assoc_OB_typ2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08402">
        <property type="entry name" value="TOBE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="6">
        <location>
            <begin position="4"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="36"/>
            <end position="43"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH35922.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="347" mass="37912" checksum="7885D5BB95E867EC" modified="2017-03-15" version="1">MSTIELKAVEKWYGEAQVIKGVDLTINEGEFVIFVGPSGCGKSTLLRMIAGLEETSRGQIMIDGRDATAEPPSKRGLAMVFQSYALYPHMSVRDNVGFPLKSAGLPKAEIEEKVNEAARVLKLDPYLDRRPKDLSGGQRQRVAIGRSIVRDPTAFLFDEPLSNLDASLRVEMRYEIAKLHQQLQASMIYVTHDQVEAMTLADRIVVLEFGKIAQVGTPRELYDHPANLFVAQFIGSPKMNVLPCSTDGSNYTVAGHRGGAFSGEAVHLGIRPEHIEIGEVGSGEVDGTVDVLEYLGADSFVIFDCGEAGQVNVRINGETELKPGDRCGLNFAKDRLHFFDADGLASK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SEZ3</accession>
    <name>A0A1M5SEZ3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Adenylyl-sulfate kinase</fullName>
            <ecNumber evidence="5">2.7.1.25</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">APS kinase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">ATP adenosine-5'-phosphosulfate 3'-phosphotransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">Adenosine-5'-phosphosulfate kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">cysC</name>
        <name evidence="8" type="ORF">SAMN05444003_2929</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the synthesis of activated sulfate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>adenosine 5'-phosphosulfate + ATP = 3'-phosphoadenylyl sulfate + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:24152"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58243"/>
            <dbReference type="ChEBI" id="CHEBI:58339"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.25"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="5">Sulfur metabolism; hydrogen sulfide biosynthesis; sulfite from sulfate: step 2/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the APS kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.25" evidence="5"/>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36990.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902331.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2929"/>
    <dbReference type="EnsemblBacteria" id="SHH36990">
        <property type="protein sequence ID" value="SHH36990"/>
        <property type="gene ID" value="SAMN05444003_2929"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00140">
        <property type="reaction ID" value="UER00205"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004020">
        <property type="term" value="F:adenylylsulfate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004781">
        <property type="term" value="F:sulfate adenylyltransferase (ATP) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070814">
        <property type="term" value="P:hydrogen sulfide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000103">
        <property type="term" value="P:sulfate assimilation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02027">
        <property type="entry name" value="APSK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00517">
        <property type="entry name" value="ATPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00065">
        <property type="entry name" value="Adenylyl_sulf_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002891">
        <property type="entry name" value="APS_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025980">
        <property type="entry name" value="ATP-Sase_PUA-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015947">
        <property type="entry name" value="PUA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024951">
        <property type="entry name" value="Sulfurylase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002650">
        <property type="entry name" value="Sulphate_adenylyltransferase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01747">
        <property type="entry name" value="ATP-sulfurylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14306">
        <property type="entry name" value="PUA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88697">
        <property type="entry name" value="SSF88697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00455">
        <property type="entry name" value="apsK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00339">
        <property type="entry name" value="sopT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="3 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2 8" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="5" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 5 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PUA_2" evidence="7">
        <location>
            <begin position="128"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-sulfurylase" evidence="6">
        <location>
            <begin position="289"/>
            <end position="503"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="519"/>
            <end position="526"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF14306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH36990.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="688" mass="77062" checksum="3ADB22F84E6CA448" modified="2017-03-15" version="1">MAPDLITDEEETLFRLLRQVNIAPEASQRASAAAIAISLGRFNTLLKTAISDGYIKVGKSDSADKRKRDAYVLTTKGAAERLRLTDRFLARKFQEYDALHAELTGVSSGYVPPNQRTTLMQDNLAPIPELYVSYDSAQKMKMDAADLVSHDLTPRQICDLELLMNGGFNPLKGFLTEVDYNSVVDTMRLTTGELWPMPITLDVSKDFADSIELGQDIALRDQEGVILGTMTVTDRWTPNKSHEAEKVFGADDSAHPAVNYLHNQAGEIYLGGPITGIQQPVHYDFRARRDTPNELRAYFRKLGWRKVVAFQTRNPLHRAHQELTFRAAKEAQANLLIHPVVGMTKPGDIDHFTRVRCYEAVLDQYPASTTSMSLLNLAMRMAGPREAVWHGLIRKNHGCTHFIVGRDHAGPGKNSAGEDFYGPYDAQDLFREHQEEIGIEMVDFKHMVYVQERAQYEPADEIKDKDSVTILNISGTELRRRLAEGLEIPEWFSFPQVVEELRKSRPPRAKQGFTVFFTGFSGSGKSTIANALMVKLMEMGGRPVTLLDGDIVRKNLSSELGFSKEHRDLNIRRIGYVASEITKNGGIAICAPIAPYATTRRAVREDIEAFGAFVEVHVATSIEECERRDRKGLYKLAREGKIKEFTGISDPYDVPENPELSVETENVEVDNCAHQVILKLESMGLITA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SGN7</accession>
    <name>A0A1M5SGN7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GcrA cell cycle regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2961</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37704.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902384.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2961"/>
    <dbReference type="EnsemblBacteria" id="SHH37704">
        <property type="protein sequence ID" value="SHH37704"/>
        <property type="gene ID" value="SAMN05444003_2961"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011681">
        <property type="entry name" value="GcrA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07750">
        <property type="entry name" value="GcrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="42"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH37704.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="197" mass="21023" checksum="EB6F02555549422D" modified="2017-03-15" version="1">MSWTDERVETLKRMWGEGQSASQIAKELGGVTRNAVIGKVHRLGLSNRAGSGGNAGKAAAKEKAPSKPATPKAPPKAKTKAAPASKPAKEEPELDENGIPISAARRAIIPAGQPLPPQPSANEISPEALAKVNEVEKTAKKLSLMELTEKTCKWPVGDPATDDFWFCGLPVQAGKPYCEAHVGVAFQPMSARRDRRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SHG9</accession>
    <name>A0A1M5SHG9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">AAA domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2974</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37986.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902405.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2974"/>
    <dbReference type="EnsemblBacteria" id="SHH37986">
        <property type="protein sequence ID" value="SHH37986"/>
        <property type="gene ID" value="SAMN05444003_2974"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13401">
        <property type="entry name" value="AAA_22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="1">
        <location>
            <begin position="41"/>
            <end position="202"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13401"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH37986.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="288" mass="33610" checksum="274E226BD2CF2265" modified="2017-03-15" version="1">MEFFRDVRPEDVFTPRSATVNKSMYVDRPEYERELKYALRSGYHLIVYGDSGCGKSWLYKKTFDNEGVDYATLDLNNCKTPDDVELLILEVIEQDQEWVEHERSELTEKGVMPYDVGRKKSGSRTLRKAQLSAFEKLCKKLRSAAKRRRAIVVFENLEHAIMNDDIVTYLRSLVLSLDDVSLCKENVQICFVGVPHDIKGILTEENRYQTISNRVTEISEVSRLTRDQAKILFRQGFEQRLQMEIEAFDYCLSQIVYLTDRIPQYIHDLCLRIAFVAEERGELCPPRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SJQ7</accession>
    <name>A0A1M5SJQ7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_3011</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902456.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3011"/>
    <dbReference type="EnsemblBacteria" id="SHH38794">
        <property type="protein sequence ID" value="SHH38794"/>
        <property type="gene ID" value="SAMN05444003_3011"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025878">
        <property type="entry name" value="Acyl-CoA_dh-like_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020953">
        <property type="entry name" value="Acyl-CoA_DH_N_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12806">
        <property type="entry name" value="Acyl-CoA_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12418">
        <property type="entry name" value="AcylCoA_DH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AcylCoA_DH_N" evidence="9">
        <location>
            <begin position="3"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="78"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="161"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="281"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_C" evidence="10">
        <location>
            <begin position="461"/>
            <end position="587"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF12418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF12806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH38794.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="592" mass="64427" checksum="6C4A4B4340A5BD49" modified="2017-03-15" version="1">MPSYTAPTKDLQFVLHDLLKVSEQDIPGFEDLDRDFTAAVLEEAGKVSSEVLAPLNVVGDTEGCVLENGVVRTPTGFKEAFEQMKEGGWTAMDVPEEFGGQGLPYIMHTAAQEPMVSANMAFNMYQGLTHGALSAILAHGSDAQKAMYLPKLASCEWTGTMNLTEPHCGTDLGLMRTKAVPQDNGTYKVSGQKIFISAGEHDMAENIIHLVLAKIPGGPDGIKGVSLFIVPKFLHDEYGNIGARNGVSCGKIEEKMGIHGNSTCVMNYDEAEGYLIGEEHKGMRAMFVMMNEARLGVGLQGYAQAEVAYQNAVAYANDRLQGRDVTGAKNPDGPADPLIVHPDIRRNLMDQKSFTEGARAFTYWGATLIDRAHKNGDKDADGLISLMTPVVKGFLTDKGFEYATAAQQVYGGHGYIEEWGMSQFARDARIAMIYEGANGVQALDLVGRKLAQDGGKHVMAFFEMIKTFIKENEGNEALKADFLDPLKEASKDLQAAGMYFMQNGMTNPNNALSGSYDFMHMMGHVCLGLMWARMGKAAMEALESGASDTEFYETKIATGRYYMARQLPATKLHLARINTGADTVMALEAANF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SLI2</accession>
    <name>A0A1M5SLI2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3031</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH39260.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902481.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH39260">
        <property type="protein sequence ID" value="SHH39260"/>
        <property type="gene ID" value="SAMN05444003_3031"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH39260.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="141" mass="15314" checksum="97B2C139DE40C5A6" modified="2017-03-15" version="1">MTIALFERTEFFVDLRDESSVDAVALSFLSKNKTVLTHYVLTKSHPEVETISLPKDPLVCVIPVIANSEIVACPSISRTNGKMDCPVMRAEGLEAILSVPLFVDLLGATALSVMNAKPRIWNKSEAKRLGDVALSLEQSAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SS92</accession>
    <name>A0A1M5SS92_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3071</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41297.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902605.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH41297">
        <property type="protein sequence ID" value="SHH41297"/>
        <property type="gene ID" value="SAMN05444003_3071"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH41297.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="132" mass="15245" checksum="7763641995ECC698" modified="2017-03-15" version="1">MLAHKLDQLQQFDDVAHLVPFLNKLRFLSFECRASARLDLFQACSVLELDSSKASDNFARILVRVIGQALDKPMEFLAPGSEIRTFDEDWLLRVLDCRMRNDTDSYLFLLMRRVPATKRSSLDLLLKNIALQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SSN5</accession>
    <name>A0A1M5SSN5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Sulfopropanediol 3-dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_3053</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="5">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the histidinol dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH40953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902579.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3053"/>
    <dbReference type="EnsemblBacteria" id="SHH40953">
        <property type="protein sequence ID" value="SHH40953"/>
        <property type="gene ID" value="SAMN05444003_3053"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004399">
        <property type="term" value="F:histidinol dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06572">
        <property type="entry name" value="Histidinol_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022695">
        <property type="entry name" value="Histidinol_DH_monofunct"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012131">
        <property type="entry name" value="Hstdl_DH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21256">
        <property type="entry name" value="PTHR21256"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00815">
        <property type="entry name" value="Histidinol_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000099">
        <property type="entry name" value="Histidinol_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00083">
        <property type="entry name" value="HOLDHDRGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00069">
        <property type="entry name" value="hisD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0520">NAD</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="319"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="320"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="122"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="183"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="206"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="229"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 5">
        <location>
            <position position="251"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4 5">
        <location>
            <position position="254"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="320"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 5">
        <location>
            <position position="353"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="408"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 5">
        <location>
            <position position="413"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR000099"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000099-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000099-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000099-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000099-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH40953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="436" mass="47408" checksum="0B33191A97BA2913" modified="2017-03-15" version="1">MAIEHLKQSKPEAEKKEEDAKVRSVVEATLADIEKRGDAAVRDLSKKFDGYEPEAFRLSQSEIEAAMQKVSTRDMEDIKFAQTQIRNFAEAQRASMTDIEVETMPGVILGHKNIPVQSVGCYVPGGKFPMVASAHMSVLTATVAGVPRIIASAPPVNGEPHPAIVAAMHMGGAHEIYVMGGIQAVGAMAIGTETIDPVHMLVGPGNAFVAEAKRQLYGRVGIDLFAGPTETQVIADETVDAEMCATDLLGQSEHGYNSPAMLITNSRKLADETLVEINRILKIIPTAETASASWENYGDIFVCDTYKEMLQVANDTAYEHVQIMTDRDDWFLENMHSYGALFLGPRTNVANGDKVIGTNHTLPTKKAGRYTGGLWVGKFLKTHSYQKVTTDEAAALVGEYGSRLCMLEGFVGHAEQCNLRVRRYGGKNVPYGQAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5STR1</accession>
    <name>A0A1M5STR1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Threonine synthase</fullName>
            <ecNumber evidence="5">4.2.3.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">SAMN05444003_3104</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H2O + O-phospho-L-homoserine = L-threonine + phosphate</text>
            <dbReference type="Rhea" id="RHEA:10840"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57590"/>
            <dbReference type="ChEBI" id="CHEBI:57926"/>
            <dbReference type="EC" id="4.2.3.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 9">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Amino-acid biosynthesis; L-threonine biosynthesis; L-threonine from L-aspartate: step 5/5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the threonine synthase family.</text>
    </comment>
    <dbReference type="EC" id="4.2.3.1" evidence="5"/>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41886.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902654.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3104"/>
    <dbReference type="EnsemblBacteria" id="SHH41886">
        <property type="protein sequence ID" value="SHH41886"/>
        <property type="gene ID" value="SAMN05444003_3104"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00050">
        <property type="reaction ID" value="UER00065"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004795">
        <property type="term" value="F:threonine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009088">
        <property type="term" value="P:threonine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1380.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="PLP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000634">
        <property type="entry name" value="Ser/Thr_deHydtase_PyrdxlP-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029144">
        <property type="entry name" value="Thr_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037158">
        <property type="entry name" value="Thr_synth_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004450">
        <property type="entry name" value="Thr_synthase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="Trypto_synt_PLP_dependent"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14821">
        <property type="entry name" value="Thr_synth_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="SSF53686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00260">
        <property type="entry name" value="thrC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00165">
        <property type="entry name" value="DEHYDRATASE_SER_THR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="8 9" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0791">Threonine biosynthesis</keyword>
    <feature type="domain" description="Thr_synth_N" evidence="11">
        <location>
            <begin position="2"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="domain" description="PALP" evidence="10">
        <location>
            <begin position="99"/>
            <end position="394"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="9">
        <location>
            <position position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000051"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00018679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR604450-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF14821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHH41886.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="478" mass="52203" checksum="5609B0C04926F23A" modified="2017-03-15" version="1">MRYISTRGQAAELSFKEALLVGLASDGGLYVPAAWPKLSFDEIRSLRGKPYAEVAFSVMSPFVGEEIDDVDLRRMIEEAYATFHHPAVTPLVQMGPNDWLLELFHGPTLAFKDVAMQILARLMDHVLTERGERLTIVGATSGDTGGAALEAFKTCHGIDTFFMFPNGKVSDFQRRQMTTIGAENCHAIAIDGSFDDCQSMVKDMFGHQSFASTVRLSAVNSINWGRVMAQVVYYFTAATALGAPEQSVSFTVPTGNFGDIYAGFVAKQMGLPISRLVIATNENDILARTLTTGDHRLGSVKPTITPSMDIQISSNFERLLFEAAGRDPAAVRDLMAALKDSRRYSLPDKMLRFIRDSFDAGAVSEVETLEEVARIWKYAGYLADPHTAVAVKVACDHAVPDVPMVTLSTAHPAKFRDAVRNATGEEARPPAWGDVSSGRTETVEHLAGDRARVEEFILKHARLTRGSVKSLTSEGVTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SUV0</accession>
    <name>A0A1M5SUV0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, ArsR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3127</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42259.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902685.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3127"/>
    <dbReference type="EnsemblBacteria" id="SHH42259">
        <property type="protein sequence ID" value="SHH42259"/>
        <property type="gene ID" value="SAMN05444003_3127"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001845">
        <property type="entry name" value="HTH_ArsR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00778">
        <property type="entry name" value="HTHARSR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00418">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50987">
        <property type="entry name" value="HTH_ARSR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH arsR-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH42259.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="105" mass="11292" checksum="F438494CF20BBE4D" modified="2017-03-15" version="1">MTIKTPHARALAALGHDARLAIFRLLVRFGPDGLRVGDIGEHLDMAPSTLAHHLSTLVDAGLVVQDKVGREVFNKADFDAATRLAQFITSECCQGVAIEKKEDAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SWT4</accession>
    <name>A0A1M5SWT4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">50S ribosomal protein L30</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpmD</name>
        <name evidence="7" type="ORF">SAMN05444003_3166</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="2 5">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the universal ribosomal protein uL30 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42965.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902749.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3166"/>
    <dbReference type="EnsemblBacteria" id="SHH42965">
        <property type="protein sequence ID" value="SHH42965"/>
        <property type="gene ID" value="SAMN05444003_3166"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01658">
        <property type="entry name" value="Ribosomal_L30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1390.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01371_B">
        <property type="entry name" value="Ribosomal_L30_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036919">
        <property type="entry name" value="L30_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005996">
        <property type="entry name" value="Ribosomal_L30_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016082">
        <property type="entry name" value="Ribosomal_L30_ferredoxin-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15892">
        <property type="entry name" value="PTHR15892"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00327">
        <property type="entry name" value="Ribosomal_L30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002211">
        <property type="entry name" value="Ribosomal_L30_bac-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55129">
        <property type="entry name" value="SSF55129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01308">
        <property type="entry name" value="rpmD_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 7" id="KW-0689">Ribosomal protein</keyword>
    <feature type="domain" description="Ribosomal_L30" evidence="6">
        <location>
            <begin position="6"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011838"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00327"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH42965.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="62" mass="6893" checksum="53CCCE2B13BE5453" modified="2017-03-15" version="1">MAKTIVVKQIGSPIRRPAKQRATLVGLGLNKMNRTRELEDTPSVRGMVESIPHLVEIIEEKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SXM0</accession>
    <name>A0A1M5SXM0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 7">50S ribosomal protein L18</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rplR</name>
        <name evidence="8" type="ORF">SAMN05444003_3168</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S and 23S rRNAs.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the universal ribosomal protein uL18 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH43008.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902752.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3168"/>
    <dbReference type="EnsemblBacteria" id="SHH43008">
        <property type="protein sequence ID" value="SHH43008"/>
        <property type="gene ID" value="SAMN05444003_3168"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01337_B">
        <property type="entry name" value="Ribosomal_L18_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005484">
        <property type="entry name" value="Ribosomal_L18"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004389">
        <property type="entry name" value="Ribosomal_L18_bac-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12899">
        <property type="entry name" value="PTHR12899"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00861">
        <property type="entry name" value="Ribosomal_L18p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00060">
        <property type="entry name" value="L18_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 7 8" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 7" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00029548"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH43008.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="121" mass="13025" checksum="2537AFC607745D98" modified="2017-03-15" version="1">MANTKRTLFLKRRLRVRNKIKKVTANVGRPRLSVHRSNKNISVQLIDDTNGVTIASASSQEKALGVVGKNNIEAATKVGAAIAERAKKAGVEVAYFDRGGFLFHGKVKALADAAREGGLKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T2G4</accession>
    <name>A0A1M5T2G4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Manganese/iron transport system substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_3205</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the bacterial solute-binding protein 9 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH44949.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902834.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3205"/>
    <dbReference type="EnsemblBacteria" id="SHH44949">
        <property type="protein sequence ID" value="SHH44949"/>
        <property type="gene ID" value="SAMN05444003_3205"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007155">
        <property type="term" value="P:cell adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030001">
        <property type="term" value="P:metal ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006129">
        <property type="entry name" value="AdhesinB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006128">
        <property type="entry name" value="Lipoprotein_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006127">
        <property type="entry name" value="ZnuA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01297">
        <property type="entry name" value="ZnuA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00691">
        <property type="entry name" value="ADHESINB"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00690">
        <property type="entry name" value="ADHESNFAMILY"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0732">Signal</keyword>
    <keyword evidence="1 3" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012545007" evidence="4">
        <location>
            <begin position="20"/>
            <end position="294"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH44949.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="294" mass="31472" checksum="F2F80055C240D909" modified="2017-03-15" version="1">MKVLAGALVLAVSATVAEAEKLKVVTTFTVLADMAQNVAGDVAEVSSITKPGAEIHGYEPTPQDIVRAYDADLILWNGLNLELWFEQFLSNFDDVPSVTLTDGIEPIAISEGTYEGKPNPHAWMGLDNALIYIDNITAALSEADPINAALYASNAAAYKDQLIETIEPLRAQILEIPEDQRWLVTCEGAFSYLAKDFGLQELYLWPMNADQVGTPQQVRSVIDGVVENDIPTVFCESTVSISPALQVAGETGAAYGGELYVDSLSEADGPVPTYLDLLTVTSRTVAEGLTGAAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T2S9</accession>
    <name>A0A1M5T2S9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Manganese/iron transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_3207</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the ABC-3 integral membrane protein family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH44998.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902840.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3207"/>
    <dbReference type="EnsemblBacteria" id="SHH44998">
        <property type="protein sequence ID" value="SHH44998"/>
        <property type="gene ID" value="SAMN05444003_3207"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037294">
        <property type="entry name" value="ABC_BtuC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001626">
        <property type="entry name" value="ABC_TroCD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30477">
        <property type="entry name" value="PTHR30477"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00950">
        <property type="entry name" value="ABC-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81345">
        <property type="entry name" value="SSF81345"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="56"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="93"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="135"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="173"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="220"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="248"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH44998.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="288" mass="30596" checksum="B5AEB9A4A0F12ECC" modified="2017-03-15" version="1">MELLWEPFTYNYMTNAMWVSALVGGVCAFLSAYLMLKGWSLIGDALAHSVVPGVAGAYLLGLPFALGAFIAGGLAAGSMLFLSERSGLKVDVIIGLIFTSFFGLGLFMVSINPIAIDVQTIIMGNVLAISPSDTLQLALIGFVTLAVLTAKWKDLMVAFFDETHARSIGLRPERLRAMFFILLSAAVVAAMQTVGAFLVIAMVVTPGATAYLLCDRFPRLLMTSVAIGALTSFFGAYISYFLDGATGGIIVVFQTLIFLIAFVFAPKHGLLASKRKARVALAERAGGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T3R5</accession>
    <name>A0A1M5T3R5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Crotonobetainyl-CoA hydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3217</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45240.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902863.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3217"/>
    <dbReference type="EnsemblBacteria" id="SHH45240">
        <property type="protein sequence ID" value="SHH45240"/>
        <property type="gene ID" value="SAMN05444003_3217"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018376">
        <property type="entry name" value="Enoyl-CoA_hyd/isom_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00166">
        <property type="entry name" value="ENOYL_COA_HYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH45240.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="259" mass="28322" checksum="5124229EE80A379C" modified="2017-03-15" version="1">MSVIKTQRDGAILEVTLDRPKANAIDLKTSREMGEVFRDFRDDPDLRVAVITGGGEKFFCPGWDLKAAADGDAVDGDYGVGGFGGLQEMREMNKPVIAAVNGIACGGGLELALSADIIIAADHATFALPEIRSGTVADAASVKLPKRIPYHIAMELLLTGRWFDAEEAHRWGLVNEIIPAADLMDRAWEQARLLASGPPLVYAAIKEIVRDAEDAKFQDAMNRITQRQLRSVDILYDSEDQLEGARAFAEKRDPVWKGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T823</accession>
    <name>A0A1M5T823_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, HxlR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3287</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46871.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902971.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3287"/>
    <dbReference type="EnsemblBacteria" id="SHH46871">
        <property type="protein sequence ID" value="SHH46871"/>
        <property type="gene ID" value="SAMN05444003_3287"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002577">
        <property type="entry name" value="HTH_HxlR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01638">
        <property type="entry name" value="HxlR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51118">
        <property type="entry name" value="HTH_HXLR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH hxlR-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="domain" description="HTH hxlR-type" evidence="1">
        <location>
            <begin position="90"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH46871.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="177" mass="19666" checksum="2AFE0EFEDD0D7772" modified="2017-03-15" version="1">MDIDVVVKMTSRAWNLPILKAFYDGVPGRQAPLLAATGAGRTAFAQSLDHLIQNGLIERNPGYGHPLRPEFRLTEAGVKAAEIAHKIRSADREDGDPLIRRSWTIPVLATLQTPLQFSGIKRQLGPITDRALSQSLKALEERTWVKRNLIPELRPPRPIYAASGTGKRIADVFELDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L0V3</accession>
    <name>A0A1M5L0V3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Membrane associated serine protease, rhomboid family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0035</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58678.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0035"/>
    <dbReference type="EnsemblBacteria" id="SHG58678">
        <property type="protein sequence ID" value="SHG58678"/>
        <property type="gene ID" value="SAMN05444003_0035"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022764">
        <property type="entry name" value="Peptidase_S54_rhomboid_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035952">
        <property type="entry name" value="Rhomboid-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01694">
        <property type="entry name" value="Rhomboid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF144091">
        <property type="entry name" value="SSF144091"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0645">Protease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="42"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="89"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="125"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="151"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="178"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="219"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="domain" description="Rhomboid" evidence="6">
        <location>
            <begin position="90"/>
            <end position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG58678.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="275" mass="30525" checksum="A6A778D0A31F74DA" modified="2017-03-15" version="1">MTGASVANSPKRFCDLDHSPTLIECGAMFPIRDHNPAERTPYVTYTLIALNVFIFLVTLLTAQDERALSMLYYDYGMIPARLTNGEGQLGILTAMFIHAGFWHLGGNMLFLWIFGDNMEDQMGHVPFLVFYLVSGVAASMAHYALAPGSPVPLVGASGAIAGVMGGYLLLFPKARVDIFLFLIIYIRIFPIPSWIMLALWFAMQIFYGVGTGTEGGVAYWAHAGGFVAGLLLTLPLWLKRGGRQFWNRTEGHPDHPDARYPMIESRFPKVTRNKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L1X2</accession>
    <name>A0A1M5L1X2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Valine--tRNA ligase</fullName>
            <ecNumber evidence="8">6.1.1.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Valyl-tRNA synthetase</fullName>
            <shortName evidence="8">ValRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">valS</name>
        <name evidence="13" type="ORF">SAMN05444003_0024</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>ATP + L-valine + tRNA(Val) = AMP + diphosphate + L-valyl-tRNA(Val)</text>
            <dbReference type="Rhea" id="RHEA:10704"/>
            <dbReference type="Rhea" id="RHEA-COMP:9672"/>
            <dbReference type="Rhea" id="RHEA-COMP:9708"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57762"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78537"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.9"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="8">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="8">The C-terminal coiled-coil domain is crucial for aminoacylation activity.</text>
    </comment>
    <comment type="domain">
        <text evidence="8">ValRS has two distinct active sites: one for aminoacylation and one for editing. The misactivated threonine is translocated from the active site to the editing site.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.9" evidence="8"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58423.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898349.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0024"/>
    <dbReference type="EnsemblBacteria" id="SHG58423">
        <property type="protein sequence ID" value="SHG58423"/>
        <property type="gene ID" value="SAMN05444003_0024"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002161">
        <property type="term" value="F:aminoacyl-tRNA editing activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004832">
        <property type="term" value="F:valine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006438">
        <property type="term" value="P:valyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07962">
        <property type="entry name" value="Anticodon_Ia_Val"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.380">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.740.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02004">
        <property type="entry name" value="Val_tRNA_synth_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001412">
        <property type="entry name" value="aa-tRNA-synth_I_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002300">
        <property type="entry name" value="aa-tRNA-synth_Ia"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033705">
        <property type="entry name" value="Anticodon_Ia_Val"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013155">
        <property type="entry name" value="M/V/L/I-tRNA-synth_anticd-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010978">
        <property type="entry name" value="tRNA-bd_arm"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009080">
        <property type="entry name" value="tRNAsynth_Ia_anticodon-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037118">
        <property type="entry name" value="Val-tRNA_synth_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019499">
        <property type="entry name" value="Val-tRNA_synth_tRNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009008">
        <property type="entry name" value="Val/Leu/Ile-tRNA-synth_edit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002303">
        <property type="entry name" value="Valyl-tRNA_ligase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11946">
        <property type="entry name" value="PTHR11946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08264">
        <property type="entry name" value="Anticodon_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00133">
        <property type="entry name" value="tRNA-synt_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10458">
        <property type="entry name" value="Val_tRNA-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00986">
        <property type="entry name" value="TRNASYNTHVAL"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46589">
        <property type="entry name" value="SSF46589"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47323">
        <property type="entry name" value="SSF47323"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50677">
        <property type="entry name" value="SSF50677"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00422">
        <property type="entry name" value="valS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00178">
        <property type="entry name" value="AA_TRNA_LIGASE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8 9" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="5 8 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2 8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 8 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 8 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 8 9" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="tRNA-synt_1" evidence="10">
        <location>
            <begin position="16"/>
            <end position="697"/>
        </location>
    </feature>
    <feature type="domain" description="Anticodon_1" evidence="11">
        <location>
            <begin position="745"/>
            <end position="890"/>
        </location>
    </feature>
    <feature type="domain" description="Val_tRNA-synt_C" evidence="12">
        <location>
            <begin position="949"/>
            <end position="1013"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="8">
        <location>
            <begin position="947"/>
            <end position="974"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region" evidence="8">
        <location>
            <begin position="46"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="8">
        <location>
            <begin position="663"/>
            <end position="667"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="666"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001624"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU363035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF08264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF10458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHG58423.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="1017" mass="113937" checksum="F46626F354835492" modified="2017-03-15" version="1">MAMDKTFDAQSAEPRLYEAWEKAGCFRAGANAKPEASTFCIMIPPPNVTGVLHVGHAFNNTLQDLLIRWHRMRGFDTLWQPGQDHAGIATQLVVERKLKEDSNMRRTDMSREDFLAKVWDWKAESGGTIINQLKRLGASCDWERNAFTMSGAPNAPKGEDGNFHDAVLKVFVDMYNKGLIYRGKRLVNWDPHFETAISDLEVENIEVDGHMWHFKYPLAGGTTYTYIEKDEDGNVTLEEERDYISIATTRPETMLGDGAVAVHPKDERYAPIVGKLCEIPVGPKQQRRLIPIITDEYPDPDFGSGAVKITGAHDFNDYQVAKRGNIPMYSLMDTKGAMRADGRPYGEEAATAQAIANGDEDFDEAKIAAMNLVPEEYRGLDRFEARKRVVADITAEGLAVMHDVTRVEKNEDGEKVEVAETVPMVENKKIMQPFGDRSKVVIEPMLTDQWFVDAEKVVGPALDAVREGRTKIMPESGEKVYFHWLDNIEPWCISRQLWWGHQIPVWYLPSISKSATSNSIDDAELDFGNPVGFCASNEAEAMVLIEDHLSKLGVTYEFRHGGYTDVKSLEAEFRSNGGLPVWRDPDVLDTWFSSGLWPFGTLGWPEQSEELKKYFPTDVLITGQDILFFWVARMMMMSNAVMETDPFHTVYLHQLVRDEKGEKMSKTRGNVIDPLEIVDEYGADAMRFTLTQMAAMGGVLKLSEDRIKGYRNFGTKLWNAFSFAEHYEIPYPGDAPRPDAQLTLNKWIIGETAKVREAVDAALTAYHFNDAANALYAFVWGKVCDWYLEFSKPILQGDDEAAKVETQKTLRWVLDQSLILLHPIMPFITEELWGFADSRAKMLVHADWPEYGAELVDADADREMNWVISLIEGIRSARAQMNVPAGLKIPVLQTSADDHAVQALANNEALVKRLARMESITVAEEAPKGSLTVPAAGASFALPLADIIDVDAEKARLGKQLEKLNKELGGLRGRLNNPKFVESAPEAVVAEAQANLALREEEEAKLVAAIGRLEEIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L2Q5</accession>
    <name>A0A1M5L2Q5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0061</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59210.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898400.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG59210">
        <property type="protein sequence ID" value="SHG59210"/>
        <property type="gene ID" value="SAMN05444003_0061"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011250">
        <property type="entry name" value="OMP/PagP_b-brl"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56925">
        <property type="entry name" value="SSF56925"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG59210.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="187" mass="20177" checksum="A95660634C93E53D" modified="2017-03-15" version="1">MKHLPLVAMCLVSACGGATTGHVTFHAPIEVEPYRAINELTPLDEVPLNGSAQYSGTIGFGSNDVNTIDDARVVGDMALDVDFRRDRVSGTSDRFVDRLTGERLTGALESDLRIYRDAEDTASDALAGFTDGILRRPNGRRVDVELDVFGDFYGTRGRRIAGTVEGEAKGLAVSPTDTVNGVFDVRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L4F0</accession>
    <name>A0A1M5L4F0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Glutathione reductase</fullName>
            <shortName evidence="11">GRase</shortName>
            <ecNumber evidence="11">1.8.1.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">SAMN05444003_0101</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Maintains high levels of reduced glutathione.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>2 glutathione + NADP(+) = glutathione disulfide + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:11740"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:57925"/>
            <dbReference type="ChEBI" id="CHEBI:58297"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.8.1.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
        <text evidence="8">Binds 1 FAD per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 10">Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.</text>
    </comment>
    <dbReference type="EC" id="1.8.1.7" evidence="11"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898455.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0101"/>
    <dbReference type="EnsemblBacteria" id="SHG59984">
        <property type="protein sequence ID" value="SHG59984"/>
        <property type="gene ID" value="SAMN05444003_0101"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004362">
        <property type="term" value="F:glutathione-disulfide reductase (NADPH) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045454">
        <property type="term" value="P:cell redox homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006749">
        <property type="term" value="P:glutathione metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016156">
        <property type="entry name" value="FAD/NAD-linked_Rdtase_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006324">
        <property type="entry name" value="GSHR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001100">
        <property type="entry name" value="Pyr_nuc-diS_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004099">
        <property type="entry name" value="Pyr_nucl-diS_OxRdtase_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012999">
        <property type="entry name" value="Pyr_OxRdtase_I_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02852">
        <property type="entry name" value="Pyr_redox_dim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000350">
        <property type="entry name" value="Mercury_reductase_MerA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55424">
        <property type="entry name" value="SSF55424"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01424">
        <property type="entry name" value="gluta_reduc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00076">
        <property type="entry name" value="PYRIDINE_REDOX_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8 10" id="KW-0274">FAD</keyword>
    <keyword evidence="3 10" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="8" id="KW-0520">NAD</keyword>
    <keyword evidence="11" id="KW-0521">NADP</keyword>
    <keyword evidence="8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 10" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6 10" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="13">
        <location>
            <begin position="6"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="domain" description="Pyr_redox_dim" evidence="12">
        <location>
            <begin position="338"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="7">
        <location>
            <position position="435"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="52"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="175"/>
            <end position="182"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="262"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="303"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="disulfide bond" description="Redox-active" evidence="9">
        <location>
            <begin position="43"/>
            <end position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000350-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000350-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000350-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU365040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF02852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="SHG59984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="452" mass="48727" checksum="BA30657ABC13601B" modified="2017-03-15" version="1">MAVFDYDLFVIGGGSGGVRAGRVAAATGAKVGLAEEFRMGGTCVIRGCVPKKLMVFASLFSEMFDDAEAYGWTVDAGDFNWSTFRPKLHAELERLEGIYRRILNSNDVTIHDARAVVKDPHTVALSDGSEFTAKHILIATGGHPTVPNIPGAEHAITSNEVFLLDELPKKMLIVGGGYIASEFAGIMNGLGVEVDQFYRGEQILRGFDDEAREMIAAGMVEKGVNLKLGLNVAEMNKRDGGIWVKDTDGNEHMYDQVMFATGRGPNTSGLGLEDAGVTLGKKGEVVVDAYSQTSVPSIYAVGDVTDRVQLTPVAIREGMAFVETVFKGNPTPVDHELIPSAVFTQPEFGTIGLTEAEAAAQEPIEVYSTSFKPMNHSFAGREDRVMMKLIVSKANRKVLGCHIVADHAGEMIQLAGIAVKLGATKEQFDQTVAVHPTMAEELVTMKEPVRET</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L715</accession>
    <name>A0A1M5L715_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">N-methylglutamate synthase subunit B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0139</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60818.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898497.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0139"/>
    <dbReference type="EnsemblBacteria" id="SHG60818">
        <property type="protein sequence ID" value="SHG60818"/>
        <property type="gene ID" value="SAMN05444003_0139"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002489">
        <property type="entry name" value="Glu_synth_asu_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036485">
        <property type="entry name" value="Glu_synth_asu_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012061">
        <property type="entry name" value="Glu_synth_lsu_3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01493">
        <property type="entry name" value="GXGXG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006519">
        <property type="entry name" value="GOGAT_dom3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69336">
        <property type="entry name" value="SSF69336"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GXGXG" evidence="1">
        <location>
            <begin position="24"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01493"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG60818.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="227" mass="23869" checksum="FB393C81D2C6BA2D" modified="2017-03-15" version="1">MQTIDLTEVGLRETNATLHAQSGDTNQTVWEIINPRGSHAIACGLNAPIEVTVRGSTGYYCAGMNQQATVNIDGSAGPGTGENIMSGKIVIEGDASQYLGATGHGGLIVVKGNASSRCGISMKGVNIVVQGNVGHMSAFMGQSGNLVVLGDAGDALGDSCYEARFFVRGEVKSLGADCEKKEMRPEHIAFLKEILAEAEIEADPSEFTRYGSARNLYNFDVDNAGAY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L7J2</accession>
    <name>A0A1M5L7J2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">3',5'-cyclic AMP phosphodiesterase CpdA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0147</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60981.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898505.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0147"/>
    <dbReference type="EnsemblBacteria" id="SHG60981">
        <property type="protein sequence ID" value="SHG60981"/>
        <property type="gene ID" value="SAMN05444003_0147"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004843">
        <property type="entry name" value="Calcineurin-like_PHP_ApaH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00149">
        <property type="entry name" value="Metallophos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Metallophos" evidence="1">
        <location>
            <begin position="7"/>
            <end position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG60981.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="276" mass="30380" checksum="FA230466DD4D33AC" modified="2017-03-15" version="1">MIGDAKKLIIMTDIHITDEGEKIIGLDPLERFCLARDAALDRHSDAEAMILMGDLTHHGRVSQYERLAPALADIPMHVIKMIGNHDRREAFVEVFSDTPVTSDGHVQQIVDLSSHRIITLDTLDGPPYPQWHHAGMLGPQRLAWLKDALEGAGSRIPLVFAHHPPFDTGIIGMDYIKLKDGEDLLALLAQYPNTHLFCGHVHRTISGSLKGVAWSMLKSTCHHGPLELEKIDPTLSLDEPGSYGLALLTENGVVFHSEDVGIGSDVQSDLHSMAKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L7J7</accession>
    <name>A0A1M5L7J7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Sarcosine oxidase subunit delta</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0144</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60936.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898501.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0144"/>
    <dbReference type="EnsemblBacteria" id="SHG60936">
        <property type="protein sequence ID" value="SHG60936"/>
        <property type="gene ID" value="SAMN05444003_0144"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008115">
        <property type="term" value="F:sarcosine oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046653">
        <property type="term" value="P:tetrahydrofolate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2270.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006279">
        <property type="entry name" value="SoxD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038561">
        <property type="entry name" value="SoxD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04267">
        <property type="entry name" value="SoxD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG60936.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="95" mass="11030" checksum="43EDA022B0635CE1" modified="2017-03-15" version="1">MIINHPLLGPRDASEFTYLGDASLIDRPDWQSETAAQDFYEYQYLRDNPAGLHQELWFHESGDRSWLVVTRNTLTHEITDVQLARDVARARGRSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L7M6</accession>
    <name>A0A1M5L7M6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">L-lactate dehydrogenase (Cytochrome)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0153</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the FMN-dependent alpha-hydroxy acid dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898511.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0153"/>
    <dbReference type="EnsemblBacteria" id="SHG61114">
        <property type="protein sequence ID" value="SHG61114"/>
        <property type="gene ID" value="SAMN05444003_0153"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02809">
        <property type="entry name" value="alpha_hydroxyacid_oxid_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012133">
        <property type="entry name" value="Alpha-hydoxy_acid_DH_FMN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000262">
        <property type="entry name" value="FMN-dep_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037396">
        <property type="entry name" value="FMN_HAD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01070">
        <property type="entry name" value="FMN_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000138">
        <property type="entry name" value="Al-hdrx_acd_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51349">
        <property type="entry name" value="FMN_HYDROXY_ACID_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0288">FMN</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FMN hydroxy acid dehydrogenase" evidence="6">
        <location>
            <begin position="2"/>
            <end position="377"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="4">
        <location>
            <position position="278"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="28"/>
        </location>
        <ligand>
            <name>glyoxylate</name>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="81"/>
            <end position="83"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="110"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="131"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="133"/>
        </location>
        <ligand>
            <name>glyoxylate</name>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="159"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="168"/>
        </location>
        <ligand>
            <name>glyoxylate</name>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="254"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="276"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="278"/>
        </location>
        <ligand>
            <name>glyoxylate</name>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="281"/>
        </location>
        <ligand>
            <name>glyoxylate</name>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="330"/>
            <end position="331"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00024042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000138-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000138-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51349"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG61114.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="377" mass="41652" checksum="977F3586E2F2515E" modified="2017-03-15" version="1">MDPFAKYPAISDLRARAKRRIPHFVWEYLDSGTGTEQTLRRNRAKLDEVLLMPSILHGEFEPDLSTNFLGKTLPLPFGIAPIGMSGLIWPDAERLLAKTSAKDNIPYTLSTVTTQVPERVGPHTGEHAWFQFYPPRDPDIRADMLKRAKASGFSTLVVTLDVPVASRRERQTRGGLTQPPRLSPRLALQAAQCPVWLNGIRKTGMPTMKLVDDYAEQKTRLPSNQHLGYLLRTSPNWEYLKAVRDAWDGPMIVKGILDPEDPPNLEKFGVDGIWVSNHAGRQFDAAPATIEQLPAIRAATNLPIVFDSGIESGLDVLRAIALGADFVMLGRAFHYGLGAMGAEGPAHVIDILRKDMISCMGQLGTHRLADLKAKLVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L880</accession>
    <name>A0A1M5L880_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">TIGR03643 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0156</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61176.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898517.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0156"/>
    <dbReference type="EnsemblBacteria" id="SHG61176">
        <property type="protein sequence ID" value="SHG61176"/>
        <property type="gene ID" value="SAMN05444003_0156"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019882">
        <property type="entry name" value="CHP03643"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10985">
        <property type="entry name" value="DUF2805"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03643">
        <property type="entry name" value="TIGR03643"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG61176.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="71" mass="8635" checksum="94275825DEC2D208" modified="2017-03-15" version="1">MTKRYDIPDAQISDIIQMALSDHIRFEDIRREYGLAEKDVKALMRQNLKPGSYRTWRKRVRDFGTRRETYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LA16</accession>
    <name>A0A1M5LA16_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 19">UDP-N-acetylenolpyruvoylglucosamine reductase</fullName>
            <ecNumber evidence="6 19">1.3.1.98</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="18 19">UDP-N-acetylmuramate dehydrogenase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="19" type="primary">murB</name>
        <name evidence="22" type="ORF">SAMN05444003_0180</name>
    </gene>
    <organism evidence="22 23">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="22 23" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="22 23">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 19">Cell wall formation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 19">
            <text>NADP(+) + UDP-N-acetyl-alpha-D-muramate = H(+) + NADPH + UDP-N-acetyl-3-O-(1-carboxyvinyl)-alpha-D-glucosamine</text>
            <dbReference type="Rhea" id="RHEA:12248"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:68483"/>
            <dbReference type="ChEBI" id="CHEBI:70757"/>
            <dbReference type="EC" id="1.3.1.98"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 19">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="5 19">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4 19">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="19">Belongs to the MurB family.</text>
    </comment>
    <dbReference type="EC" id="1.3.1.98" evidence="6 19"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61765.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898547.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0180"/>
    <dbReference type="EnsemblBacteria" id="SHG61765">
        <property type="protein sequence ID" value="SHG61765"/>
        <property type="gene ID" value="SAMN05444003_0180"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008762">
        <property type="term" value="F:UDP-N-acetylmuramate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.43.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.78.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00037">
        <property type="entry name" value="MurB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016166">
        <property type="entry name" value="FAD-bd_PCMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016167">
        <property type="entry name" value="FAD-bd_PCMH_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003170">
        <property type="entry name" value="MurB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011601">
        <property type="entry name" value="MurB_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036635">
        <property type="entry name" value="MurB_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006094">
        <property type="entry name" value="Oxid_FAD_bind_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21071">
        <property type="entry name" value="PTHR21071"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01565">
        <property type="entry name" value="FAD_binding_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02873">
        <property type="entry name" value="MurB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56194">
        <property type="entry name" value="SSF56194"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00179">
        <property type="entry name" value="murB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51387">
        <property type="entry name" value="FAD_PCMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="16 19" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="9 19" id="KW-0132">Cell division</keyword>
    <keyword evidence="13 19" id="KW-0133">Cell shape</keyword>
    <keyword evidence="17 19" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="8 19" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="11 19" id="KW-0274">FAD</keyword>
    <keyword evidence="10 19" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="12 19" id="KW-0521">NADP</keyword>
    <keyword evidence="15 19" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="14 19" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="23" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding PCMH-type" evidence="21">
        <location>
            <begin position="25"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="20">
        <location>
            <begin position="203"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="20">
        <location>
            <begin position="212"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="active site" evidence="19">
        <location>
            <position position="168"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="19">
        <location>
            <position position="217"/>
        </location>
    </feature>
    <feature type="active site" evidence="19">
        <location>
            <position position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00003921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00004752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012518"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00015188"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="ARBA" id="ARBA00031026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="20">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="21">
        <source>
            <dbReference type="PROSITE" id="PS51387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="22">
        <source>
            <dbReference type="EMBL" id="SHG61765.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="23">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="315" mass="33245" checksum="D5A89F1B0B00E2F0" modified="2017-03-15" version="1">MTKSLPNVRGTVTRNKDLGGLTWLRVGGPADVLFQPADVEDLAAFLSGLPTEVPVFPMGVGSNLIVRDGGVRGVVIRLGRGFNGIDIDSDRVTAGAAALDAHVARKAAEAGLDLTFLRTIPGSIGGAVRMNAGCYGSYTGDVFESAEVVLRDGTRATLSASDLNFAYRSTTLPEGAVMVSATFKAPNGDPEELTARMEAQLAKRDETQPTKDRTAGSTFRNPAGFSSTGREDDTHDLKAWKVIDNAGMRGATRGGAVMNTMHSNFLTNAGGATAADLEDLGEEVRKAVYAQSGITLQWEIMRVGERDAPKAAKKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LC46</accession>
    <name>A0A1M5LC46_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0217</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62684.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898608.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0217"/>
    <dbReference type="EnsemblBacteria" id="SHG62684">
        <property type="protein sequence ID" value="SHG62684"/>
        <property type="gene ID" value="SAMN05444003_0217"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019225">
        <property type="entry name" value="DUF2155"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09923">
        <property type="entry name" value="DUF2155"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012612577" evidence="1">
        <location>
            <begin position="20"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG62684.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="119" mass="12958" checksum="68DD51A17BC6E7DF" modified="2017-03-15" version="1">MKTAFVCLLLAFSACSAIAQIALEGVGGELRVLDKVTGEVSDLDLRIGQSEQVGRLNITLEDCRVPRVNPTGDAYARITVYYSDNISPAFEGWLIASAPALHAMDHPRYDIWALRCSTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LI78</accession>
    <name>A0A1M5LI78_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Ferredoxin--NADP(+) reductase</fullName>
            <ecNumber evidence="4">1.18.1.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0305</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H(+) + NADP(+) + 2 reduced [2Fe-2S]-[ferredoxin] = NADPH + 2 oxidized [2Fe-2S]-[ferredoxin]</text>
            <dbReference type="Rhea" id="RHEA:20125"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.18.1.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the ferredoxin--NADP reductase type 1 family.</text>
    </comment>
    <dbReference type="EC" id="1.18.1.2" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64747.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898745.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0305"/>
    <dbReference type="EnsemblBacteria" id="SHG64747">
        <property type="protein sequence ID" value="SHG64747"/>
        <property type="gene ID" value="SAMN05444003_0305"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004324">
        <property type="term" value="F:ferredoxin-NADP+ reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06195">
        <property type="entry name" value="FNR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017927">
        <property type="entry name" value="FAD-bd_FR_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033892">
        <property type="entry name" value="FNR_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039261">
        <property type="entry name" value="FNR_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001433">
        <property type="entry name" value="OxRdtase_FAD/NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00175">
        <property type="entry name" value="NAD_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52343">
        <property type="entry name" value="SSF52343"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="SSF63380"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51384">
        <property type="entry name" value="FAD_FR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding FR-type" evidence="6">
        <location>
            <begin position="17"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008312"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013223"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG64747.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="282" mass="31613" checksum="A0371B75F01E5BB6" modified="2017-03-15" version="1">MTEHTVVTDQPAKAVPALPDAQTVTEVKHYTDRLFSFRCTRPASLRFRSGEFVMIGLMGDPHPETGKQKPLLRAYSIASPAWEEEMEFYSIKVPDGPLTSKLQHIQPGEEIILRPKPVGTLVHDALLPGKRLYFFATGTGFAPFASLLREPQTYEDYDEVIITHTCRDVDELTYGRDLIEDLKKDELMNELMGEGFGDKIQYYPTTTREESPKMGRITTLIENGELFEDLGVPPLNPETDRAMVCGSLGFNLDIKDLLEKAGLKEGANSDPQQFVIEKAFVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LJB1</accession>
    <name>A0A1M5LJB1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)</fullName>
            <ecNumber evidence="6">1.17.7.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">ispG</name>
        <name evidence="7" type="ORF">SAMN05444003_0329</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>(2E)-4-hydroxy-3-methylbut-2-enyl diphosphate + 2 H(+) + H2O + oxidized [flavodoxin] = 2-C-methyl-D-erythritol 2,4-cyclic diphosphate + reduced [flavodoxin]</text>
            <dbReference type="Rhea" id="RHEA:43604"/>
            <dbReference type="Rhea" id="RHEA-COMP:10622"/>
            <dbReference type="Rhea" id="RHEA-COMP:10623"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57618"/>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
            <dbReference type="ChEBI" id="CHEBI:58483"/>
            <dbReference type="ChEBI" id="CHEBI:128753"/>
            <dbReference type="EC" id="1.17.7.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="6">Binds 1 [4Fe-4S] cluster.</text>
    </comment>
    <comment type="pathway">
        <text evidence="6">Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-phosphate: step 5/6.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the IspG family.</text>
    </comment>
    <dbReference type="EC" id="1.17.7.3" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65202.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898772.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0329"/>
    <dbReference type="EnsemblBacteria" id="SHG65202">
        <property type="protein sequence ID" value="SHG65202"/>
        <property type="gene ID" value="SAMN05444003_0329"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00056">
        <property type="reaction ID" value="UER00096"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046429">
        <property type="term" value="F:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019288">
        <property type="term" value="P:isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016114">
        <property type="term" value="P:terpenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.413.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00159">
        <property type="entry name" value="IspG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011005">
        <property type="entry name" value="Dihydropteroate_synth-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016425">
        <property type="entry name" value="IspG_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004588">
        <property type="entry name" value="IspG_bac-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045854">
        <property type="entry name" value="NO2/SO3_Rdtase_4Fe4S_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30454">
        <property type="entry name" value="PTHR30454"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04551">
        <property type="entry name" value="GcpE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004640">
        <property type="entry name" value="IspG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51717">
        <property type="entry name" value="SSF51717"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56014">
        <property type="entry name" value="SSF56014"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00612">
        <property type="entry name" value="ispG_gcpE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 6" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="3 6" id="KW-0408">Iron</keyword>
    <keyword evidence="4 6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5 6" id="KW-0414">Isoprene biosynthesis</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="6">
        <location>
            <position position="275"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="278"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="310"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="317"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00159"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG65202.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="375" mass="40362" checksum="8BB5DB7FAF4C1989" modified="2017-03-15" version="1">MSLNHIRPWRNIYRRESRQIMVGNVPVGGDAPISVQTMTNTLTTDVKATIEQCQRAVEAGADIVRISVPDEASSRALKEIVPEVDAPIVADIHFHYKRGIEAAEAGAACLRINPGNIGSEDRVKEVIKAARDNSCSIRIGVNAGSLEKHLLEKYGEPTPDAMCESGLDHIKILQDNDFQEFKISCKASDVFMAAAAYQQLAEATDAPIHLGITEAGGLTSGTIKSAIGLGNLLWMGIGDTIRVSLSADPVEEVKVGYEILKSLGLRHRGVNIISCPSCARQGFDVIKTVEILEERLEHIKTPMSLSIIGCVVNGPGEALMTDVGFTGGGAGNGMVYLAGKQSHRQDNDTMIDHIVEQVEKKAQELEAERAAEAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LMH4</accession>
    <name>A0A1M5LMH4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">Cyclic pyranopterin monophosphate synthase</fullName>
            <ecNumber evidence="3 5">4.6.1.17</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Molybdenum cofactor biosynthesis protein C</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">moaC</name>
        <name evidence="7" type="ORF">SAMN05444003_0374</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the conversion of (8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>(8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate = cyclic pyranopterin phosphate + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:49580"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:59648"/>
            <dbReference type="ChEBI" id="CHEBI:131766"/>
            <dbReference type="EC" id="4.6.1.17"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 5">Cofactor biosynthesis; molybdopterin biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homohexamer; trimer of dimers.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the MoaC family.</text>
    </comment>
    <dbReference type="EC" id="4.6.1.17" evidence="3 5"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66166.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898842.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0374"/>
    <dbReference type="EnsemblBacteria" id="SHG66166">
        <property type="protein sequence ID" value="SHG66166"/>
        <property type="gene ID" value="SAMN05444003_0374"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00344"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061799">
        <property type="term" value="F:cyclic pyranopterin monophosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01420">
        <property type="entry name" value="MoaC_PE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.640">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01224_B">
        <property type="entry name" value="MoaC_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023045">
        <property type="entry name" value="Mo_CF_biosynth-C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036522">
        <property type="entry name" value="MoaC_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002820">
        <property type="entry name" value="Mopterin_CF_biosynth-C_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01967">
        <property type="entry name" value="MoaC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55040">
        <property type="entry name" value="SSF55040"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00581">
        <property type="entry name" value="moaC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0456">Lyase</keyword>
    <keyword evidence="4 5" id="KW-0501">Molybdenum cofactor biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MoaC" evidence="6">
        <location>
            <begin position="14"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="74"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="112"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="active site" evidence="5">
        <location>
            <position position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001637"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005046"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012575"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG66166.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="157" mass="16457" checksum="F086BD1EA8B0E2AA" modified="2017-03-15" version="1">MALSHFDDSGKAHMVDVSDKEITSRIAMAEGYVTMTAETLALIKEGRAEKGDVLGIARLAGIMGAKKTADLIPLCHPLPITKVSVALEPDDDLPGVRISATVKTTGKTGVEMEALTAVSTAALTVHDMVKAVQKDMVIGGIKVTLKDGGKSGRFENP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LRQ5</accession>
    <name>A0A1M5LRQ5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Enoyl-CoA hydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0444</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67777.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898946.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0444"/>
    <dbReference type="EnsemblBacteria" id="SHG67777">
        <property type="protein sequence ID" value="SHG67777"/>
        <property type="gene ID" value="SAMN05444003_0444"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003860">
        <property type="term" value="F:3-hydroxyisobutyryl-CoA hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045004">
        <property type="entry name" value="ECH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032259">
        <property type="entry name" value="HIBYL-CoA-H"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43176">
        <property type="entry name" value="PTHR43176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16113">
        <property type="entry name" value="ECH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ECH_2" evidence="2">
        <location>
            <begin position="13"/>
            <end position="330"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF16113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG67777.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="344" mass="37564" checksum="C16A02930AAF80D1" modified="2017-03-15" version="1">MSDISIRIEGRAGRITLQRPEALNALTYQMCLDIEAALDDWREADIDLLIIDGVGDRAFCAGGDIADMYKSGQHGDLDYGRTFWCDEYRMNAKMFEFPKPVVTFLQGFTMGGGVGVGCHGSHRIVCDNSQIAMPEATIGLLPDVGGTLLLARAPGRLGEFLGVTGHRMGAGDAIYAEFADYFLPFEDWDALKAELIATGDVSRVDAAAKPAPDSPLKAAQADIDAVFGGETLGDIMRAMPEAPEGHLAQAMKAIGHNAPLAMAVAVEAIHRVRARQDIRFALDQEFRYTYRSVEQGDFIEGIRAAIIDRDRNPKWVHDSWEAVTGADVLKMTMPLGKDALQWED</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LWN0</accession>
    <name>A0A1M5LWN0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Hippurate hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0521</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69504.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899044.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0521"/>
    <dbReference type="EnsemblBacteria" id="SHG69504">
        <property type="protein sequence ID" value="SHG69504"/>
        <property type="gene ID" value="SAMN05444003_0521"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017439">
        <property type="entry name" value="Amidohydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036264">
        <property type="entry name" value="Bact_exopeptidase_dim_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002933">
        <property type="entry name" value="Peptidase_M20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011650">
        <property type="entry name" value="Peptidase_M20_dimer"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11014">
        <property type="entry name" value="PTHR11014"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07687">
        <property type="entry name" value="M20_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01546">
        <property type="entry name" value="Peptidase_M20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005962">
        <property type="entry name" value="Pept_M20D_amidohydro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55031">
        <property type="entry name" value="SSF55031"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01891">
        <property type="entry name" value="amidohydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="M20_dimer" evidence="2">
        <location>
            <begin position="186"/>
            <end position="281"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG69504.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="388" mass="41812" checksum="C20180D70701A75A" modified="2017-03-15" version="1">MPVINRIAEFSEDMKTWRRHLHTMPELELECYETASYVVERLKEFGITEIHEGIAKSGVVAIIEGQGEGPTIGLRADMDALPMTEMTGLEYASKVDGRMHACGHDGHTTMLLGAAKYMAETRNFSGRVALIFQPAEEEGGGGEVMVQEGMMEKFGIDQVYALHNAPGTPIGHFYTTPGPIMAAVDTFTMNIMGKGGHGAYPHDCNDPIPVAISIAQAIQTIVSRNHDGRKEIVISVTQIHSGTASNIIPESAMINGTVRTFDPEVQKLVMDRMQAIADGQAAAFGVEVELDYEIGYPATINDPNKAAFAAEVAKEVAGEAGVSIDVGPEMGAEDFSYMLNERPGAYLFVGNGDSAGVHHPEYDFADETAASGASFFARIVERAQPVVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-09-29" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LX02</accession>
    <name>A0A1M5LX02_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0522</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69526.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG69526">
        <property type="protein sequence ID" value="SHG69526"/>
        <property type="gene ID" value="SAMN05444003_0522"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037079">
        <property type="entry name" value="AF2212/PG0164-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015018">
        <property type="entry name" value="DUF1905"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08922">
        <property type="entry name" value="DUF1905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG69526.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="153" mass="17480" checksum="ACCCA350FADE263D" modified="2017-03-15" version="1">MDDWITFEGQITPMVWGESVFTVLPIPDDIANDLRSRNAKRIEIELNDTPFNLALTKAPVIDHTFVYTGKSVLKETGIEPGDMIDVRLRVANPDIVEEPHDVLAALRESEAITQWERLTACRKRGYLHQINTAKRDATRKDRIQKLIVTLKKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LZQ4</accession>
    <name>A0A1M5LZQ4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Mg2+ and Co2+ transporter CorB, contains DUF21, CBS pair, and CorC-HlyC domains</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">SAMN05444003_0567</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0053 family. Hemolysin C subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70501.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0567"/>
    <dbReference type="EnsemblBacteria" id="SHG70501">
        <property type="protein sequence ID" value="SHG70501"/>
        <property type="gene ID" value="SAMN05444003_0567"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04590">
        <property type="entry name" value="CBS_pair_CorC_HlyC_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002550">
        <property type="entry name" value="CNNM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044751">
        <property type="entry name" value="Ion_transp-like_CBS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005170">
        <property type="entry name" value="Transptr-assoc_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03471">
        <property type="entry name" value="CorC_HlyC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01595">
        <property type="entry name" value="DUF21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01091">
        <property type="entry name" value="CorC_HlyC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51846">
        <property type="entry name" value="CNNM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0129">CBS domain</keyword>
    <keyword evidence="7 9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="3 9 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 9 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="9"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="67"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="98"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="137"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="domain" description="CNNM transmembrane" evidence="12">
        <location>
            <begin position="7"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="11">
        <location>
            <begin position="215"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="11">
        <location>
            <begin position="281"/>
            <end position="338"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHG70501.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="425" mass="46387" checksum="038E103D2ECBDF87" modified="2017-03-15" version="1">MIDTTAFDAAFWVSAGAIAVLLVLSGFFSGSETALTAASRGKLRATADKGGRGAQRALDITEDNERLIGSVLLGNNVVNILATSLATAVLTKVFGQNGVAAATLIMTLLVLIFAEVLPKTYAITNPEQVASRVAGPISVVVFVFSPIVSAVRLLVRGVLRIFGVEIDPNSNILAVREEIAGALQLGHSEGVVEKEDRDRILGALDLSDREVEEVMLHRSGIEMIDVAQGRDAILKQVLESKYTRLPVFQDDPENIVGVIHAKDLLRATHNGASSEFDILEVAKPPYFIPETTTLDDQMRNFLRRQTHFALVVDEYGSLQGLITLEDILEEIVGEITDEFDSDEEDLIEATGDGAFLVEGAMTIRDLNRAHDWSLPDEEANTVAGLVIHEAQMIPLEGQVFSFHGFRFEVVEKDQNRISQLKIRKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M4S1</accession>
    <name>A0A1M5M4S1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ectoine hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0640</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72297.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899213.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0640"/>
    <dbReference type="EnsemblBacteria" id="SHG72297">
        <property type="protein sequence ID" value="SHG72297"/>
        <property type="gene ID" value="SAMN05444003_0640"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029149">
        <property type="entry name" value="Creatin/AminoP/Spt16_NTD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036005">
        <property type="entry name" value="Creatinase/aminopeptidase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000587">
        <property type="entry name" value="Creatinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000994">
        <property type="entry name" value="Pept_M24"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01321">
        <property type="entry name" value="Creatinase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00557">
        <property type="entry name" value="Peptidase_M24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53092">
        <property type="entry name" value="SSF53092"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55920">
        <property type="entry name" value="SSF55920"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Creatinase_N" evidence="2">
        <location>
            <begin position="16"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M24" evidence="1">
        <location>
            <begin position="166"/>
            <end position="374"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG72297.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="391" mass="43398" checksum="58F86934B9AD0DAB" modified="2017-03-15" version="1">MPNPNPPFSILEYQSRSEKTRLAMQKAELEVLLLTDPSNMAWLTGYDGWSFYVHQGVLVTLDNDPIWWGRGIDLAGANRTVWMNDAQNRGYEDAYVQNPKRHPMSDLAEILRDLSVLNKTLGVELDNYYFCAKAHQTLEAEGIKTQDATGLVNWLRAKKSEAEIEYMRRAGKIVTCMHQTILEAAKPGMRKNDLVAEIYRTGIQGADGHWGDYPAIVPMAPSGLDATAAHLTWDDAPLEKDIGTFFEIAGAYRRYQCPQSRTLSLGSVPERYQKAEEAVQNATDAVLALAKPGVLCEDLANAFDTTLGKHGFEKDNRCGYSIGLSYPPDWGERTMSLRAGDTTPLEAGMTFHFMPALWLDDGGIETTEPILITEQGCEKICGTPSGLMVKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-06-02" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MD52</accession>
    <name>A0A1M5MD52_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0767</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75177.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG75177">
        <property type="protein sequence ID" value="SHG75177"/>
        <property type="gene ID" value="SAMN05444003_0767"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021451">
        <property type="entry name" value="DUF3102"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11300">
        <property type="entry name" value="DUF3102"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="98"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="101"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG75177.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="139" mass="16244" checksum="C3740D2D02C04DF5" modified="2017-03-15" version="1">MTQHDVALTRSAMWAELVNMKHRAVLRRELNNKEEAAEIGEVLIKVKEELPHGEFTPWVRRDCSFTDRHARNYIRIAQVKRKRVSDFDRCTSIREVLSLGKPQPEEPKRPTRAATLDDLRKVERLRSLRDDPSASEGER</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MEV1</accession>
    <name>A0A1M5MEV1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cysteine synthase A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0797</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75835.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899472.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0797"/>
    <dbReference type="EnsemblBacteria" id="SHG75835">
        <property type="protein sequence ID" value="SHG75835"/>
        <property type="gene ID" value="SAMN05444003_0797"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016765">
        <property type="term" value="F:transferase activity, transferring alkyl or aryl (other than methyl) groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006535">
        <property type="term" value="P:cysteine biosynthetic process from serine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001216">
        <property type="entry name" value="P-phosphate_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="PLP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="Trypto_synt_PLP_dependent"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="SSF53686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00901">
        <property type="entry name" value="CYS_SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PALP" evidence="3">
        <location>
            <begin position="8"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG75835.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="344" mass="36424" checksum="3D9F4221CCA20A21" modified="2017-03-15" version="1">MAIRSDLADAVGNTPLIKLRAASEQTGCEILGKAEFLNPGQSVKDRAALFIIRDAIAKGKLKPGGTIVEGTAGNTGIGLALVGASMGFKTVIVIPETQSEEKKDMIRLAGAELVQVPAKPYRDPNNYIRYSMRLAEELNKTAPNGAIWANQFDNTANRQAHIETTGPEIWEQTGGKIDGFICAAGSGGTVAGMAAALQPKGVKVGLADPDGAALHSYYTTGELSSSGGSITEGIGQGRITANLEGFTPDYCYNVPDREAVEIVFDLLENEGLVMGGSTGINIAGAIRMAKDMGPGHTIVTILCDYGTRYQSKLFNADFLRSKDLPVPKFLDRAPADLPVMFEDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MJW8</accession>
    <name>A0A1M5MJW8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">5-methylcytosine-specific restriction endonuclease McrA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0869</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77578.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0869"/>
    <dbReference type="EnsemblBacteria" id="SHG77578">
        <property type="protein sequence ID" value="SHG77578"/>
        <property type="gene ID" value="SAMN05444003_0869"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00085">
        <property type="entry name" value="HNHc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029471">
        <property type="entry name" value="HNH_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003615">
        <property type="entry name" value="HNH_nuc"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14279">
        <property type="entry name" value="HNH_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00507">
        <property type="entry name" value="HNHc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HNHc" evidence="1">
        <location>
            <begin position="92"/>
            <end position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00507"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG77578.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="196" mass="22570" checksum="982FD0D8FEED59DE" modified="2017-03-15" version="1">MTMDGDFRTEFVREPRALKHFPALVLNADYRPLSYYPLSLWPWQDAVKAAWLDRVDIVSEYDEVVHSPSTTIRIPSVVVLKDYVKPQKRVAFTRFNLFLRDEFKCQYCGAKGDLTFDHVVPRAKGGITSWENVVAACSPCNLKKGSKLLSQTSMSLQKKPIQPASGQLMNMGRKFPPNYLHESWMDYLYWDAELEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MLC2</accession>
    <name>A0A1M5MLC2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0897</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78224.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG78224">
        <property type="protein sequence ID" value="SHG78224"/>
        <property type="gene ID" value="SAMN05444003_0897"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG78224.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="75" mass="8711" checksum="0E4250AB8F4E788C" modified="2017-03-15" version="1">MFEFLRKSKAEDVVERHRAAWKRSDWRKTVDHLLQCPLSRLPARSSGTACCEMSASFCVISQFKTFNLVQIAYVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MMC2</accession>
    <name>A0A1M5MMC2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0906</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78421.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG78421">
        <property type="protein sequence ID" value="SHG78421"/>
        <property type="gene ID" value="SAMN05444003_0906"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="50"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="86"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG78421.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="205" mass="22605" checksum="D6CE14C74906BC7D" modified="2017-03-15" version="1">MTDISFVRETGNVGNEFRTKALQGRAKVQGFRIEDTFWGYIAHGDGSHNLVMVIAQLLAMLTGAFYLALSIAIFSMPELALDQYGMAWRAGASVVFVILGGYLVWFASRGTVTEIHVDIQKGEVRRALRSRAGRTTVLGRYGLDSIGGVFVVRSKQKEGKASLVLRYRNTAKTLEIARGRPAALQRLKDRIGRDLILSEQNVSIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MNY9</accession>
    <name>A0A1M5MNY9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 7">50S ribosomal protein L9</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rplI</name>
        <name evidence="11" type="ORF">SAMN05444003_0909</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Binds to the 23S rRNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the bacterial ribosomal protein bL9 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78483.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899625.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0909"/>
    <dbReference type="EnsemblBacteria" id="SHG78483">
        <property type="protein sequence ID" value="SHG78483"/>
        <property type="gene ID" value="SAMN05444003_0909"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.430.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.5.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00503">
        <property type="entry name" value="Ribosomal_L9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000244">
        <property type="entry name" value="Ribosomal_L9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009027">
        <property type="entry name" value="Ribosomal_L9/RNase_H1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020594">
        <property type="entry name" value="Ribosomal_L9_bac/chp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020069">
        <property type="entry name" value="Ribosomal_L9_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036791">
        <property type="entry name" value="Ribosomal_L9_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020070">
        <property type="entry name" value="Ribosomal_L9_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036935">
        <property type="entry name" value="Ribosomal_L9_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21368">
        <property type="entry name" value="PTHR21368"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03948">
        <property type="entry name" value="Ribosomal_L9_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01281">
        <property type="entry name" value="Ribosomal_L9_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55653">
        <property type="entry name" value="SSF55653"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55658">
        <property type="entry name" value="SSF55658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00158">
        <property type="entry name" value="L9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00651">
        <property type="entry name" value="RIBOSOMAL_L9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 7 11" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 7" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="RIBOSOMAL_L9" evidence="10">
        <location>
            <begin position="13"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="179"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="8">
        <location>
            <begin position="42"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="9">
        <location>
            <begin position="183"/>
            <end position="212"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00029520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00503"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS00651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG78483.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="212" mass="22855" checksum="A8496546E037C2F8" modified="2017-03-15" version="1">MEVILLERVAKLGQMGEVVNVKQGYARNFLLPQGKALRANAANLAKFDAEKAQMEARNLETKKEAESLAEKLDGQQFIVIRSASDAGALYGSVTTRDAAEVATEGGFSVDKRQVVLTGPIKELGLHNVEVNLHPEVQATIQLNVARSEEEAELQASGKSIQELAAEEEAAAEFEIEQLFDDIGAAQADDDELLPAADEAEEDAGDDSSEEEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MQX2</accession>
    <name>A0A1M5MQX2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cytochrome c-type biogenesis protein CcmH</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0973</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899719.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0973"/>
    <dbReference type="EnsemblBacteria" id="SHG79794">
        <property type="protein sequence ID" value="SHG79794"/>
        <property type="gene ID" value="SAMN05444003_0973"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017004">
        <property type="term" value="P:cytochrome complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017560">
        <property type="entry name" value="Cyt_c_biogenesis_CcmI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03142">
        <property type="entry name" value="cytochro_ccmI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0201">Cytochrome c-type biogenesis</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022748"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG79794.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="395" mass="42505" checksum="80C4309E63645756" modified="2017-03-15" version="1">MIFWVTVLLLTLIVAVFVAAPLLRGSAEDTSSPDVAVYKAQLREIDRDVARGTLDADSAERTRVEVSRRLLVAAKAEQSVATEGPGRSLAIGAAVLLVAVSVGTYWIAGAPGEADQPLAQRLAQAEELRENRPSQDDMVAVAPPPPEVDAPEEYLASVQQLRDIMPTRPDDLKGWELLAFHETELRNYSAAAEAQARVIELSDGGSEEELVRLADLLVAAADGFVSKEAEEVARELLSRDEENVAGRYYIGAMHNQTGRPDIAFRLWRPLVDAGTDTFHVALARNYIENAAARAGIEYSLPEFSGPDLATIQAAENLSDEDRAAMIANMVSGLSDRLATEGGPVTDWARLVRAYGVLGEIETAQTVLREAFEVFGSDPNAVAVLREAASAIGVSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MZ73</accession>
    <name>A0A1M5MZ73_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">GTP cyclohydrolase FolE2</fullName>
            <ecNumber evidence="2">3.5.4.16</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">folE2</name>
        <name evidence="3" type="ORF">SAMN05444003_1102</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Converts GTP to 7,8-dihydroneopterin triphosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>GTP + H2O = 7,8-dihydroneopterin 3'-triphosphate + formate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17473"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:58462"/>
            <dbReference type="EC" id="3.5.4.16"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Cofactor biosynthesis; 7,8-dihydroneopterin triphosphate biosynthesis; 7,8-dihydroneopterin triphosphate from GTP: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the GTP cyclohydrolase IV family.</text>
    </comment>
    <dbReference type="EC" id="3.5.4.16" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82515.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1102"/>
    <dbReference type="EnsemblBacteria" id="SHG82515">
        <property type="protein sequence ID" value="SHG82515"/>
        <property type="gene ID" value="SAMN05444003_1102"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00848">
        <property type="reaction ID" value="UER00151"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003934">
        <property type="term" value="F:GTP cyclohydrolase I activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035998">
        <property type="term" value="P:7,8-dihydroneopterin 3'-triphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01527_B">
        <property type="entry name" value="GTP_cyclohydrol_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022838">
        <property type="entry name" value="GTP_cyclohydrolase_FolE2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003801">
        <property type="entry name" value="GTP_cyclohydrolase_FolE2/MptA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36445">
        <property type="entry name" value="PTHR36445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02649">
        <property type="entry name" value="GCHY-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="site" description="May be catalytically important" evidence="2">
        <location>
            <position position="261"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG82515.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="403" mass="45426" checksum="D2A1E93D20254BC4" modified="2017-03-15" version="1">MIDLKAELSRIYWENVGKVSTEPHIDRSDGPEGAAEMNLHSRDLDRLPSREEAEDALALLRRWASDVSAEEVATLDPLVSRLIPGQEVSNYPALARAYPDAFEVDETYKASMPDLQNGPSSLIRGAKQQIQHVGISNFRLPIRFRTRDGGEITLETSVTGTVSLDAEKKGINMSRIMRTFYQHAEETFSFDVIERALDAYKTDLDSFDARIQMRFSFPMKVESLRSGLSGYQYYDIALELVETDGARKKIMHLDYVYSSTCPCSLELSEHARQYRGQLATPHSQRSVARISALVEDEGDVLWFEDLIDQARSAVPTETQVMVKREDEQAFAELNAANPIFVEDAARLFTEQLKLDQRISDFRVIASHQESLHSHDAVSVLTEGETFAAVSLDPRLFQSLFHVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MZX8</accession>
    <name>A0A1M5MZX8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, CarD family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1113</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82787.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899839.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1113"/>
    <dbReference type="EnsemblBacteria" id="SHG82787">
        <property type="protein sequence ID" value="SHG82787"/>
        <property type="gene ID" value="SAMN05444003_1113"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.1290">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036101">
        <property type="entry name" value="CarD-like/TRCF_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003711">
        <property type="entry name" value="CarD-like/TRCF_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042215">
        <property type="entry name" value="CarD-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02559">
        <property type="entry name" value="CarD_CdnL_TRCF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01058">
        <property type="entry name" value="CarD_TRCF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141259">
        <property type="entry name" value="SSF141259"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CarD_TRCF" evidence="2">
        <location>
            <begin position="7"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="123"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM01058"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG82787.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="168" mass="18730" checksum="B2D9DF2A05B0B6F6" modified="2017-03-15" version="1">MAKKKHEFKPNDFVVYPAHGVGKVVAIEEEEVAGFALELFVIAFEKDKMTLRVPTNKVSDVGMRALATPDVVSNAMKTLRGKAKVKKAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRQDDQREQSYSERQLYEAALERLTREIAAVAGNDEGAAQAEITDVLVSRAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N2V2</accession>
    <name>A0A1M5N2V2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1154</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83755.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899876.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG83755">
        <property type="protein sequence ID" value="SHG83755"/>
        <property type="gene ID" value="SAMN05444003_1154"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012997008" evidence="1">
        <location>
            <begin position="24"/>
            <end position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG83755.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="90" mass="9197" checksum="1349D7E64A33A7D6" modified="2017-03-15" version="1">MTRISMTFAAASLTLSLAPAAHAYQTEIDLDQIALEAGETLNVLFADHDTAPNGTCSPGLDPELALALGLTSEAGEPNPAISLSLACNAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N631</accession>
    <name>A0A1M5N631_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">DNA topoisomerase 4 subunit B</fullName>
            <ecNumber evidence="6">5.6.2.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Topoisomerase IV subunit B</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">parE</name>
        <name evidence="8" type="ORF">SAMN05444003_1190</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>ATP-dependent breakage, passage and rejoining of double-stranded DNA.</text>
            <dbReference type="EC" id="5.6.2.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="6">Heterotetramer composed of ParC and ParE.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the type II topoisomerase GyrB family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the type II topoisomerase family. ParE type 1 subfamily.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.2" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899908.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1190"/>
    <dbReference type="EnsemblBacteria" id="SHG84609">
        <property type="protein sequence ID" value="SHG84609"/>
        <property type="gene ID" value="SAMN05444003_1190"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003918">
        <property type="term" value="F:DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007059">
        <property type="term" value="P:chromosome segregation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006265">
        <property type="term" value="P:DNA topological change"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.670">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00938">
        <property type="entry name" value="ParE_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002288">
        <property type="entry name" value="DNA_gyrase_B_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001241">
        <property type="entry name" value="Topo_IIA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013760">
        <property type="entry name" value="Topo_IIA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013759">
        <property type="entry name" value="Topo_IIA_B_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013506">
        <property type="entry name" value="Topo_IIA_bsu_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018522">
        <property type="entry name" value="TopoIIA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005737">
        <property type="entry name" value="TopoIV_B_Gneg"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006171">
        <property type="entry name" value="TOPRIM_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00204">
        <property type="entry name" value="DNA_gyraseB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00986">
        <property type="entry name" value="DNA_gyraseB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01751">
        <property type="entry name" value="Toprim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00433">
        <property type="entry name" value="TOP2c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56719">
        <property type="entry name" value="SSF56719"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01055">
        <property type="entry name" value="parE_Gneg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00177">
        <property type="entry name" value="TOPOISOMERASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50880">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5 6 8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0799">Topoisomerase</keyword>
    <feature type="domain" description="Toprim" evidence="7">
        <location>
            <begin position="433"/>
            <end position="547"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="14"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="54"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="81"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="123"/>
            <end position="129"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="353"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="site" description="Interaction with DNA" evidence="6">
        <location>
            <position position="467"/>
        </location>
    </feature>
    <feature type="site" description="Interaction with DNA" evidence="6">
        <location>
            <position position="519"/>
        </location>
    </feature>
    <feature type="site" description="Interaction with DNA" evidence="6">
        <location>
            <position position="636"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00938"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG84609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="652" mass="71423" checksum="B9DE8F7EE136C2C8" modified="2017-03-15" version="1">MADDLFNGGGNDDYNADSIEVLEGLEPVRKRPGMYIGGTDERALHHMVAEVLDNSMDEAVAGFANRIEVELHADYAITIRDNGRGIPTDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGLHGVGASVVNALSDSMVVQVARNKELVEQRFSRGIPLGPVEKIGSAPNRRGTTVTFHADEEIFGHHRFKPARLFKSIRSKAYLFSGVEIRWKSAIDDGETPTEATFHFPGGLSDYLKETLNGATTYADNAFSGTVDFQEKFGEPGKVEWAINWTPSRDGFIQSYCNTVPTPEGGTHVTGFWAAILKGIKAYGELVNNKKAGSITREDLISGGCALVSCFIREPAFVGQTKDRLSTEAAQKMTEGAVRDHFDNWLAADTKSAGAILDFLVLRAEERLRRKAEKETQRKSATKKLRLPGKLVDCSSSTREGTELFIVEGDSAGGSAKMARDRKTQALLPLRGKILNVLGAASSKLGSNAEINDLTQALGVGLGTRFNVDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPMIDAGHLYLACPPLYRLTQGAKRLYVADDAEKNLMMEKGLGGKGKIDVQRFKGLGEMDAKDLKDTTMDPATRKLIRVSIDDEMPGETGDLVERLMGKKPELRFQYIQENARFVEELDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N695</accession>
    <name>A0A1M5N695_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphinothricin acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1211</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85068.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
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        <property type="gene ID" value="SAMN05444003_1211"/>
    </dbReference>
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        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
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        <property type="project" value="InterPro"/>
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        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
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    </dbReference>
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        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG85068.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="161" mass="17685" checksum="1FC1C1266F5993FD" modified="2017-03-15" version="1">MIRAALPEDAAEIAAIWNPIIRNTLVTFTTEEKLEADLASLIAEKSASGQSFLVFEEARKVIGFATYGPFRGGPGYKHTAEHSVILAPSARGRGVGKALMNELERHAKRAEIHQMIAGISSANSQGIQFHKAIGYEQVATLPEVGRKFDQWLDLVLMQKRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N6Y3</accession>
    <name>A0A1M5N6Y3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1218</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85227.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899930.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1218"/>
    <dbReference type="EnsemblBacteria" id="SHG85227">
        <property type="protein sequence ID" value="SHG85227"/>
        <property type="gene ID" value="SAMN05444003_1218"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG85227.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="116" mass="13214" checksum="ACE00B2AEB72697A" modified="2017-03-15" version="1">MEKHRGFPGRLPGTDFQFVIRRANKAGATKLIARERFSDRKPADRRADTGFMKALWDHFGAEPFMRGNLDAGRLSWLFGREVVPAEDPFDPESYDALLQIDEDLARVSFPEAMGEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N8S4</accession>
    <name>A0A1M5N8S4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1252</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86006.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1252"/>
    <dbReference type="EnsemblBacteria" id="SHG86006">
        <property type="protein sequence ID" value="SHG86006"/>
        <property type="gene ID" value="SAMN05444003_1252"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013291052" evidence="2">
        <location>
            <begin position="19"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="92"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="204"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="215"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG86006.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="250" mass="26107" checksum="3F5D5E9DC5D21521" modified="2017-03-15" version="1">MRLLVASSAIVTLLAACAGPVPDSGRGVGFSNYSEFERQRAEREAALTGVPVVDETSAQPTPLNSGTITSEELAAVGIGQSQGVGAPLSAISVPQPAPETGRIAGVEASPDNPAPELASNPAISDEQDFSAVSSRESIESDAERRAAQAAARQQIEPTALPTRSDNTGPNIVAYALNAPNQKGQEWYSRSLLSGESRFQRNCASYNTPDDAQRDFLARGGPERDPRGIDPDGDGFACGWDPAPFRLAAGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N905</accession>
    <name>A0A1M5N905_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">UPF0173 metal-dependent hydrolase SAMN05444003_1256</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1256</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0173 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86086.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899961.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1256"/>
    <dbReference type="EnsemblBacteria" id="SHG86086">
        <property type="protein sequence ID" value="SHG86086"/>
        <property type="gene ID" value="SAMN05444003_1256"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00457">
        <property type="entry name" value="UPF0173"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022877">
        <property type="entry name" value="UPF0173"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lactamase_B" evidence="2">
        <location>
            <begin position="7"/>
            <end position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00457"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG86086.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="229" mass="24713" checksum="3BD9788A0BB80028" modified="2017-03-15" version="1">MKIIWLGHASFRLEIAGETILIDPWLTGNPLFPDDQMDEALAGVTHILMTHGHFDHASELDEIAEKTGATICGIPELCGAFADAGLPTIDFNKGGTIKIGDVAVSMVSASHSSSMKTASGDKYAGTEAGFMIEAEGHTIYVSGDTDIMADMDWMGDFYNPDIGILCAGGHYTMGMKGAAYAAKRYFNFKTVIPCHYRTFPLLEQSAEELMNGLPGVNVIEPRVMEAIEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NAD8</accession>
    <name>A0A1M5NAD8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1275</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86422.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899979.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1275"/>
    <dbReference type="EnsemblBacteria" id="SHG86422">
        <property type="protein sequence ID" value="SHG86422"/>
        <property type="gene ID" value="SAMN05444003_1275"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG86422.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="117" mass="12233" checksum="483C3EAE1A6BD28E" modified="2017-03-15" version="1">MTQPDDQLLASLFDEARSENVEPSDDLLTRVLADADECQPKASSVSAAKASFWDRLLSGVGGWPALSGVTAAGVAGLWIGLTPPDVVDDWVANAMGNTTSVSFVDDFAGFDEVTLDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NBI6</accession>
    <name>A0A1M5NBI6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">TldD protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_1311</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase U62 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86986.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900451.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1311"/>
    <dbReference type="EnsemblBacteria" id="SHG86986">
        <property type="protein sequence ID" value="SHG86986"/>
        <property type="gene ID" value="SAMN05444003_1311"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045569">
        <property type="entry name" value="Metalloprtase-TldD/E_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045570">
        <property type="entry name" value="Metalloprtase-TldD/E_cen_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002510">
        <property type="entry name" value="Metalloprtase-TldD/E_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025502">
        <property type="entry name" value="TldD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035068">
        <property type="entry name" value="TldD/PmbA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036059">
        <property type="entry name" value="TldD/PmbA_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01523">
        <property type="entry name" value="PmbA_TldD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19289">
        <property type="entry name" value="PmbA_TldD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19290">
        <property type="entry name" value="PmbA_TldD_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004919">
        <property type="entry name" value="TldD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111283">
        <property type="entry name" value="SSF111283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PmbA_TldD" evidence="3">
        <location>
            <begin position="33"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="domain" description="PmbA_TldD_M" evidence="5">
        <location>
            <begin position="124"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="domain" description="PmbA_TldD_C" evidence="4">
        <location>
            <begin position="237"/>
            <end position="470"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005836"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01523"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF19289"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF19290"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG86986.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="473" mass="49393" checksum="86E1AE02A7BBD757" modified="2017-03-15" version="1">MASDAFRPFETHFDQETALSLVQEATRGADDGELFLERRKSEMLSFEDGRVKTASYDASEGFGLRAVKGETAGYAHSTTLNEQALRRAVGTARLAVGDGGGTLANAPAGTNRKLYSDGNPMAQATFPAKIDVLREIDEFARSLDSRVVQVSASMAASLQEVTILRPEGTLVTDTRPMSRVNVSVIVEDQGRRESGSMGGGGRAGLLGLITRDHWEGVVREALRIALVNLDAEPAPAGVMDVVLGPGWPGILLHEAIGHGLEGDFNRKGSSAFAGLMGQQIAAKGVTVLDDGTIPDRRGSITVDDEGTPSAKNTLIEDGVLVGFMQDRQNARLMDVAPTGNGRRESYAHAPMPRMTNTYMLSGDADPAALVADLKDGIYAVGFGGGQVDITNGKFVFSCTEAYRVQNGVVGAPVKGATLIGDGATALKHIRGIGNDMALDPGIGNCGKAGQWVPVGVGQPSLMIGGLTVGGAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NBS8</accession>
    <name>A0A1M5NBS8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Membrane-bound lytic murein transglycosylase B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1287</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86629.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899990.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG86629">
        <property type="protein sequence ID" value="SHG86629"/>
        <property type="gene ID" value="SAMN05444003_1287"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023346">
        <property type="entry name" value="Lysozyme-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043426">
        <property type="entry name" value="MltB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031304">
        <property type="entry name" value="SLT_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30163">
        <property type="entry name" value="PTHR30163"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13406">
        <property type="entry name" value="SLT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53955">
        <property type="entry name" value="SSF53955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013177863" evidence="1">
        <location>
            <begin position="20"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="domain" description="SLT_2" evidence="2">
        <location>
            <begin position="30"/>
            <end position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13406"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG86629.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="265" mass="28547" checksum="B2457B08F5D243A3" modified="2017-03-15" version="1">MIRSLWPILAISVSTGAYAATCGNDSSGYANWKQEFAAEAAQAGVGERGLQALANAQYSQSTINADRNQRGVRYELGDFVRIRLGSIDGFAAQARREKAKYPEFYTQLERVYGVPAGIILAIHGMETGFGRNMGTTPVVDSITTVAYDCRRSDFFTPHAIAALKLVDQGSLSSDQSGAAHGEMGHTQFLPGNVITYGVDADRNGKVDLYGIADSLASTANFLRQKGWQAGQPYQEGTANFAVLDEWNAATVYQQAIALSAEAIDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NC85</accession>
    <name>A0A1M5NC85_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transglycosylase SLT domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1318</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the virb1 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87072.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900017.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1318"/>
    <dbReference type="EnsemblBacteria" id="SHG87072">
        <property type="protein sequence ID" value="SHG87072"/>
        <property type="gene ID" value="SAMN05444003_1318"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023346">
        <property type="entry name" value="Lysozyme-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008258">
        <property type="entry name" value="Transglycosylase_SLT_dom_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01464">
        <property type="entry name" value="SLT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53955">
        <property type="entry name" value="SSF53955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012364169" evidence="2">
        <location>
            <begin position="23"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="domain" description="SLT" evidence="3">
        <location>
            <begin position="138"/>
            <end position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG87072.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="269" mass="28288" checksum="9CC05B362CFB0C71" modified="2017-03-15" version="1">MLRFIGRLALLMTIGASTQVIAEQHTLQPDFTFKRIGVPSAGSRNRITVQIAPAPAAPVQVAPTATPDAPTSNAELAWFWDSVSPALGDSGPGRLEQAVTTLRDAPDGVYRPTPRLETMKQIVAAHGSDIILNSIGTDISPALIVALISVESSGSTTAVSHAGATGLMQLMPATAERFGVQDSTHPAENIKGGAAYLSWLMDHFNDDPVLALAGYNAGEGAVRDHAGVPPYRETRNYVPKVIAAWTIARGLCKTPPELISDGCAFVIDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NGY4</accession>
    <name>A0A1M5NGY4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Xanthine dehydrogenase, molybdenum binding subunit apoprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1408</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88695.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900094.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1408"/>
    <dbReference type="EnsemblBacteria" id="SHG88695">
        <property type="protein sequence ID" value="SHG88695"/>
        <property type="gene ID" value="SAMN05444003_1408"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030151">
        <property type="term" value="F:molybdenum ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000674">
        <property type="entry name" value="Ald_Oxase/Xan_DH_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036856">
        <property type="entry name" value="Ald_Oxase/Xan_DH_a/b_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016208">
        <property type="entry name" value="Ald_Oxase/xanthine_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008274">
        <property type="entry name" value="AldOxase/xan_DH_Mopterin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037165">
        <property type="entry name" value="AldOxase/xan_DH_Mopterin-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014309">
        <property type="entry name" value="Xanthine_DH_Mopterin-bd_su"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11908">
        <property type="entry name" value="PTHR11908"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01315">
        <property type="entry name" value="Ald_Xan_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02738">
        <property type="entry name" value="Ald_Xan_dh_C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01008">
        <property type="entry name" value="Ald_Xan_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54665">
        <property type="entry name" value="SSF54665"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56003">
        <property type="entry name" value="SSF56003"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02965">
        <property type="entry name" value="xanthine_xdhB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ald_Xan_dh_C" evidence="1">
        <location>
            <begin position="17"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG88695.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="794" mass="84526" checksum="57B95D1C2CB6AA04" modified="2017-03-15" version="1">MSIAKPLPHDAAKLHVTGAARYIDDVPIPAGSLHLAFGLSEVARGQITSMDLSAVRAAEGVVEVLVADDLPFANDVSPSAHDEPLLSDGTVHYVGQPIFLVIAKGHLAARKAARLGKIEIEEETPILTVEEALAADSRFENGPRIWAKGDVVPALDAAPHRLTGSFELGGQEHFYLEGQAALALPQENGDMVVQSSTQHPTEIQHKVAEALGIPMHGVRCEVRRMGGGFGGKESQGNALAVACAVAARATGRACKMRYDRDDDMMITGKRHDFRIDYDVGFDADGSVHAVDFTQYTRCGWAMDLSLPVADRAMLHADNAYDLPAARITSHRLKTNTQSATAFRGFGGPQGVLGIERVMDAVAHELGLDPVAVRRRNYYPEMGAAAEADDLGAAAHVSDLGAAALEGDAPSPAGISAQKTGTTPYGMEVTDFILDGMTDALLVTSDYEVRRREIAAWNAQQTILKRGIAFSPVKFGISFTLTHLNQAGALVHVYQDGSIHLNHGGTEMGQGLFQKVAQVAASRFGVPLETVKITATDTGKVPNTSATAASSGSDLNGMAVMQACDVIRARMTEALALDAAVGADAVRFEDGEVHVGERVMSFAEAASFAYQSRVSLSATGFYKTPDLSWDRIKGQGRPFFYFAQGCAVTEVVIDTLTGENRILRADILHDAGASLNPALDIGQVEGGYVQGAGWLTTEELVWDDKGRLRTHAPSTYKIPACSDRPDVFNVALWDAPNPAQTIYRSKAVGEPPFMLGISAYLALSDAVGSCGPNYPDLQAPATAEEVLAAVRRTRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NHU3</accession>
    <name>A0A1M5NHU3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative endonuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1430</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0102 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89146.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900115.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1430"/>
    <dbReference type="EnsemblBacteria" id="SHG89146">
        <property type="protein sequence ID" value="SHG89146"/>
        <property type="gene ID" value="SAMN05444003_1430"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011856">
        <property type="entry name" value="tRNA_endonuc-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003509">
        <property type="entry name" value="UPF0102"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34039">
        <property type="entry name" value="PTHR34039"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02021">
        <property type="entry name" value="UPF0102"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG89146.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="116" mass="12691" checksum="1A1F2CB7E39A2C22" modified="2017-03-15" version="1">MTGSVGYHAGVASENAVAAAYLSAAYSLSANRWRGKRGEIDLIATRDGQTVFVEVKKSRSHDIAVQKLSARQQNRIYGAVEEFLSLNTDCDADCRFDVPTVDATGDIRILENVIFH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NJA2</accession>
    <name>A0A1M5NJA2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Catechol 2,3-dioxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1437</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89289.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900121.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1437"/>
    <dbReference type="EnsemblBacteria" id="SHG89289">
        <property type="protein sequence ID" value="SHG89289"/>
        <property type="gene ID" value="SAMN05444003_1437"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004360">
        <property type="entry name" value="Glyas_Fos-R_dOase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00903">
        <property type="entry name" value="Glyoxalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="10"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG89289.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="163" mass="17841" checksum="868B584D36EB243C" modified="2017-03-15" version="1">MTKSGFATPHIGHVHLKVSDLDRAVAFYRDIIGLDVMTRMGDKAAFLGADGYHHHIGLNTWESKGGTPAPRGHTGLYHTAFLYPDLATLAQTLRRALDAGVEIEGAADHGVSQAIYFNDPDGNGIEIYVDRDESEWPRDADGSLNLPTSRFDLNALLETYETS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PJ54</accession>
    <name>A0A1M5PJ54_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1657</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH01519.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH01519">
        <property type="protein sequence ID" value="SHH01519"/>
        <property type="gene ID" value="SAMN05444003_1657"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH01519.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="228" mass="25195" checksum="5218FF80EEBF507F" modified="2017-03-15" version="1">MRFLLAISIAFFLSTTTGKSETPLTEMRISDLISTCAEIIERDGDVAIYARELFSRSRFNVGVQNEENGKRCLETAFGGAFKFEDGRFVPGKYNDLEAGRQETLRGRFCELKDLIEETAQTIKLAKDAEQDRRAETLNATIEACNEWFVTDEIGAITNDVCNSIFTSGGLPNSEIAGPTASELLLAQLINRSAIIELETLTEPDLIPLMAIAEFDASTKLGNDNFDCQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PKN5</accession>
    <name>A0A1M5PKN5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Endoribonuclease YbeY</fullName>
            <ecNumber evidence="7">3.1.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">ybeY</name>
        <name evidence="8" type="ORF">SAMN05444003_1700</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="7">Binds 1 zinc ion.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the endoribonuclease YbeY family.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02354.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900516.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1700"/>
    <dbReference type="EnsemblBacteria" id="SHH02354">
        <property type="protein sequence ID" value="SHH02354"/>
        <property type="gene ID" value="SAMN05444003_1700"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004521">
        <property type="term" value="F:endoribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006364">
        <property type="term" value="P:rRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.390.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00009">
        <property type="entry name" value="Endoribonucl_YbeY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023091">
        <property type="entry name" value="MetalPrtase_cat_dom_sf_prd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002036">
        <property type="entry name" value="YbeY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020549">
        <property type="entry name" value="YbeY_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46986">
        <property type="entry name" value="PTHR46986"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02130">
        <property type="entry name" value="YbeY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00043">
        <property type="entry name" value="TIGR00043"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01306">
        <property type="entry name" value="UPF0054"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 7" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 7" id="KW-0540">Nuclease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0690">Ribosome biogenesis</keyword>
    <keyword evidence="7" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="6 7" id="KW-0862">Zinc</keyword>
    <feature type="binding site" evidence="7">
        <location>
            <position position="128"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="132"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="138"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010875"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00009"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH02354.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="166" mass="18384" checksum="C3E23E6841A81F84" modified="2017-03-15" version="1">MSVDCIIEDRRWAEANIVQIAVAAYQSTMRHLGYDPDQFEIGLLACDDEKIAELNIQFRDKPVPTNVLSWPSEERGAEVEGAKPEPVIQMMQGDTFLGDVAIAYDTCAKEAAESDKPLKSHATHLLVHGTLHLLGYDHERDGDATLMEGLETQILETMGIADPYAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PQC2</accession>
    <name>A0A1M5PQC2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Prephenate dehydratase</fullName>
            <ecNumber evidence="3">4.2.1.51</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_1777</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H(+) + prephenate = 3-phenylpyruvate + CO2 + H2O</text>
            <dbReference type="Rhea" id="RHEA:21648"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:18005"/>
            <dbReference type="ChEBI" id="CHEBI:29934"/>
            <dbReference type="EC" id="4.2.1.51"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-acid biosynthesis; L-phenylalanine biosynthesis; phenylpyruvate from prephenate: step 1/1.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.51" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03880.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900580.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1777"/>
    <dbReference type="EnsemblBacteria" id="SHH03880">
        <property type="protein sequence ID" value="SHH03880"/>
        <property type="gene ID" value="SAMN05444003_1777"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00121">
        <property type="reaction ID" value="UER00345"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004106">
        <property type="term" value="F:chorismate mutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004664">
        <property type="term" value="F:prephenate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009094">
        <property type="term" value="P:L-phenylalanine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008242">
        <property type="entry name" value="Chor_mutase/pphenate_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001086">
        <property type="entry name" value="Preph_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018528">
        <property type="entry name" value="Preph_deHydtase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00800">
        <property type="entry name" value="PDT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001500">
        <property type="entry name" value="Chor_mut_pdt_Ppr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00857">
        <property type="entry name" value="PREPHENATE_DEHYDR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51171">
        <property type="entry name" value="PREPHENATE_DEHYDR_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="5" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0456">Lyase</keyword>
    <keyword evidence="6" id="KW-0584">Phenylalanine biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Prephenate dehydratase" evidence="9">
        <location>
            <begin position="4"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="domain" description="ACT" evidence="10">
        <location>
            <begin position="194"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="site" description="Essential for prephenate dehydratase activity" evidence="8">
        <location>
            <position position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000913"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013147"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023222"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR001500-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH03880.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="280" mass="30818" checksum="83807ABD44A8B35F" modified="2017-03-15" version="1">MSKKIAFQGELGAYGHEACVAARPDHEPLPCPTFVDAIESVRKGDADLGMIAVENSTYGRVADVHSLLPESGLQIVDEAFVRVHVNLLGHPDATLNDITEAHGHPVILPQCGKFLRENDIRPVGSTDNARAAREVAADGDVTKAALASELAADIYGLNILARHIEDHDRNTTRFLVMSREPDYRRRGDHGMMTSFVFRVRNIPASLYKAMGGFATNGVNMTKLESYMVGGQFTATQFYAEIEGHPDDRNVQLALEELDYFTDLVTLLGVYPAAARRHERD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PR94</accession>
    <name>A0A1M5PR94_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cystathione beta-lyase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1798</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04284.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900598.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1798"/>
    <dbReference type="EnsemblBacteria" id="SHH04284">
        <property type="protein sequence ID" value="SHH04284"/>
        <property type="gene ID" value="SAMN05444003_1798"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027619">
        <property type="entry name" value="C_S_lyase_PatB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04350">
        <property type="entry name" value="C_S_lyase_PatB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="1">
        <location>
            <begin position="50"/>
            <end position="381"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH04284.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="390" mass="43293" checksum="F2239A5C23E318B1" modified="2017-03-15" version="1">MTNFDTPIDRRGTHCVKWDSMEGLYGVSPDDGIAMWVADMDFVAPDCIQRAIQDMKDHGVYGYFGDESTYRSAIQWWMAERHGWQIDPSWIFTTHGLVNGTAMCVDAYTNEGDGIVLFTPVYHAFARVISAANRKVVECELVNADGRYEFDFDAYDAQMTGNERMVILCSPHNPGGRVWTKTELQAVAAFAKRHELILVSDEIHHDLTMPGHTHIPMSHIDGITDRLVMMTATTKTFNIAGSHSGNVIIEDPDLRARFAARMAALGLSPNSFGLFMATAAYTPEGAAWVDDLTTYLDGNRKIFDAGINAIPGLASMELESTYLSWVDFESTGMERSEFTNRVQSSAKLAVNHGPTFGKGGESFLRFNIATQRANVIKAVERMQAAFSDLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PRI9</accession>
    <name>A0A1M5PRI9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Precorrin-2/cobalt-factor-2 C20-methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_1802</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; adenosylcobalamin biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 7 8">Belongs to the precorrin methyltransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04362.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900877.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1802"/>
    <dbReference type="EnsemblBacteria" id="SHH04362">
        <property type="protein sequence ID" value="SHH04362"/>
        <property type="gene ID" value="SAMN05444003_1802"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00148"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030788">
        <property type="term" value="F:precorrin-2 C20-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd11645">
        <property type="entry name" value="Precorrin_2_C20_MT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1010.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000878">
        <property type="entry name" value="4pyrrol_Mease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035996">
        <property type="entry name" value="4pyrrol_Methylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014777">
        <property type="entry name" value="4pyrrole_Mease_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014776">
        <property type="entry name" value="4pyrrole_Mease_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012382">
        <property type="entry name" value="CobI/CbiL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006364">
        <property type="entry name" value="CobI/CbiL/CobIJ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003043">
        <property type="entry name" value="Uropor_MeTrfase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00590">
        <property type="entry name" value="TP_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036427">
        <property type="entry name" value="Precrrn-2_mtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53790">
        <property type="entry name" value="SSF53790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01467">
        <property type="entry name" value="cobI_cbiL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00840">
        <property type="entry name" value="SUMT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="4 8 11" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="5 8 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TP_methylase" evidence="10">
        <location>
            <begin position="19"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="9">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRNR" id="PIRNR036427"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH04362.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="248" mass="26416" checksum="A28AF504D3997F6F" modified="2017-03-15" version="1">MTTGDARLTPSPHPPSQGTLYGVGVGPGDPELMTVRAVRLISEAKVIAYPTLAGAESFARSIAAEVIPDGVDEIVMDVPMTVARAPAQEAYDLGAEQIAAALDRGEDVVCLCEGDPFFYGSFMYLFARLSDGYDVEVVPGVTSVTTCAARAGMPLAARNERLTILPGPLDEAELTKRIEGAESVAIMKVGRHLPKIWSVIEALGLTDKAVYVERASLPEEVVLPLSEAPEKAPYFSMILLTKGADPWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PRL8</accession>
    <name>A0A1M5PRL8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Aminotransferase</fullName>
            <ecNumber evidence="1">2.6.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1810</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.-" evidence="1"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04517.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900608.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1810"/>
    <dbReference type="EnsemblBacteria" id="SHH04517">
        <property type="protein sequence ID" value="SHH04517"/>
        <property type="gene ID" value="SAMN05444003_1810"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901605">
        <property type="term" value="P:alpha-amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004838">
        <property type="entry name" value="NHTrfase_class1_PyrdxlP-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00105">
        <property type="entry name" value="AA_TRANSFER_CLASS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="2">
        <location>
            <begin position="124"/>
            <end position="301"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH04517.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="310" mass="33811" checksum="12E5BC9D674B32B0" modified="2017-03-15" version="1">MTKTRDHGGGLDAAMARWGGQRKDWVDLSTGINPHPYPIGQIPSHSWTALPDEAAFKSLETAARRFWNIPPQADILAAPGASALIAQMPSALSGQSVYIPPPTYNEHKAAFDEAGWNASDDADALVVVHPNNPDGHLWEASSLSAKQIIIDESFCDVAPDQSLIDLSRREGVIVLKSFGKFWGLAGLRLGFAIGDPDIIAKLRAKLGPWQISGPALEIGATALENFDWAEQTRAALSNSANRLDALMQNAGTTACGGTSLFRLYEVDDAAIWQNRLAEHHIWTRIFPYSKTWLRLGLPPSDRWAQLENAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PT64</accession>
    <name>A0A1M5PT64_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Permease of the drug/metabolite transporter (DMT) superfamily</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1832</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04968.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900626.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1832"/>
    <dbReference type="EnsemblBacteria" id="SHH04968">
        <property type="protein sequence ID" value="SHH04968"/>
        <property type="gene ID" value="SAMN05444003_1832"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="33"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="75"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="100"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="126"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="148"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="180"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="209"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="241"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="264"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="7"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="152"/>
            <end position="279"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH04968.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="286" mass="30957" checksum="81024D85586DD7BE" modified="2017-03-15" version="1">MQNNLRLGIAFMCLTAFIFAVQDGISRHLADAYNVYMIVMIRYWFFAAFVIAVARRQSGSIKAAAATSQPILQMVRGALLALEICVMVSAFVILGLVESHAIFACYPLLIAALSGPILGERVGWRRWAAIGVGFIGVLIILQPGRTVFAAGAVIPFASATMFALYSLLTRYAARKDTAATSFFWTGTVGAVVMSAIGIWFWEPMTPPDWAWMAALCVTGALGHWALIKAYEAAEASAIQPFAYLQMVFAIFIGISIFGETLEPHVALGGVIIVAAGLYTLFRARRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PVR4</accession>
    <name>A0A1M5PVR4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1871</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05740.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900661.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH05740">
        <property type="protein sequence ID" value="SHH05740"/>
        <property type="gene ID" value="SAMN05444003_1871"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="48"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH05740.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="94" mass="9909" checksum="D3B726D009860713" modified="2017-03-15" version="1">MRDFFINALERVIGVLVVLMSIGVVIAAGGAMIGGVTTVDGTVVGGGIVPGLLVLLFGSLYVILMAGFMYLGLGIYQNTRRMAEKMDRMAQKGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PXK7</accession>
    <name>A0A1M5PXK7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Probable branched-chain-amino-acid aminotransferase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_1905</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Acts on leucine, isoleucine and valine.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 7">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3 6">Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06436.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900690.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1905"/>
    <dbReference type="EnsemblBacteria" id="SHH06436">
        <property type="protein sequence ID" value="SHH06436"/>
        <property type="gene ID" value="SAMN05444003_1905"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001544">
        <property type="entry name" value="Aminotrans_IV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018300">
        <property type="entry name" value="Aminotrans_IV_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036038">
        <property type="entry name" value="Aminotransferase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043132">
        <property type="entry name" value="BCAT-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043131">
        <property type="entry name" value="BCAT-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01063">
        <property type="entry name" value="Aminotran_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56752">
        <property type="entry name" value="SSF56752"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00770">
        <property type="entry name" value="AA_TRANSFER_CLASS_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00014472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU004516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH06436.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="286" mass="31627" checksum="2533FB94C04BFC12" modified="2017-03-15" version="1">MRTVYVNGDYLPENEAKVSIFDRGFLMADGVYEVTSVIDGKLIDFDGHAKRLERSLNELNMPHPISMDDLLKVHRELVRINEIEEGMIYLQITRGAPDDRDFVFPDPETTPCTIVLFTQNKPGLADSPAAKKGMKVISIEDQRWGRRDIKTVQLLYPSMGKMMAKAAGADDAWMVEDGAVTEGTSNNAYIVRGNTIITRQLSNDILHGITRAAVLRFAKEAQMTVEERAFTIEEAQGADEAFITSASTFVMPVVEIDGAALGDGTPGPVSARLREIYLDESRKAAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PYX5</accession>
    <name>A0A1M5PYX5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Threonine/homoserine efflux transporter RhtA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1944</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900720.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1944"/>
    <dbReference type="EnsemblBacteria" id="SHH07105">
        <property type="protein sequence ID" value="SHH07105"/>
        <property type="gene ID" value="SAMN05444003_1944"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="44"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="78"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="104"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="131"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="154"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="185"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="232"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="260"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="286"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="13"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="157"/>
            <end position="298"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH07105.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="312" mass="33945" checksum="C308F43CB755FC3F" modified="2017-03-15" version="1">MTQRQTLSPNIVGSLCALGSTFVFSYNDSIVKYFSDAYALHQIILTRFLFGLFFVMVLIAPFSGGLGIVKTKKLKQHLLRGLFVVTANMTFFLGLAVIPLAEAVAIFFISPLIITAFSVIFLNEQVGPRRWAAVAVGFLGVLIVMRPGAETFQLASLLPAIAAVAYASIHIMTRKIGTTESAVTMTFYIQIVFIVVCLLIGLALGDGRYNDQDNASLAFLFRAWAWPEPFDLFLMVLLGLGIAIAGLLISQAYRIGEPGFVASFEYVAIPISILIGYFVFDEIPNPVALVGVALILGSGLYAIARERKAAER</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q0G1</accession>
    <name>A0A1M5Q0G1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1957</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07382.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900733.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1957"/>
    <dbReference type="EnsemblBacteria" id="SHH07382">
        <property type="protein sequence ID" value="SHH07382"/>
        <property type="gene ID" value="SAMN05444003_1957"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="5"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH07382.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="312" mass="34283" checksum="F43E190E6AA7E502" modified="2017-03-15" version="1">MERLPSLTALRAFEAAARHMSFAKAAEELFVTPAALSFQIKSLETELGQPLFHRLNRAVTLTEAGRALAPGATDGFSILLSAWRNAARLSDNGVLTVTAGPAFTAKWLAPRMFDFAQAHPEIELRFSASLRIIDFDHDEVDVAIRFGLGHDKKVYSNPLIKEWMTPMMTPEMAEKFGLDLTGATFVHDDSIGFFKTPCDWSAWCRAAQIDLDTSHGPRFSQADHALDAAMSGAGVVLGRVSLATRALETGRLVAPFKTGLVADAQFRFICPEGSETRPQVQAFEAWVKKEISASTKFEEGRVLVRSRDVLPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q385</accession>
    <name>A0A1M5Q385_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Phytase-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2017</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08508.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900777.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2017"/>
    <dbReference type="EnsemblBacteria" id="SHH08508">
        <property type="protein sequence ID" value="SHH08508"/>
        <property type="gene ID" value="SAMN05444003_2017"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027372">
        <property type="entry name" value="Phytase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014567">
        <property type="entry name" value="UCP031900"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13449">
        <property type="entry name" value="Phytase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF031900">
        <property type="entry name" value="UCP031900"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012206350" description="Phytase-like domain-containing protein" evidence="1">
        <location>
            <begin position="20"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="domain" description="Phytase-like" evidence="2">
        <location>
            <begin position="35"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13449"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH08508.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="287" mass="32767" checksum="532D714919D256D4" modified="2017-03-15" version="1">MKRLCLCFALFLSATSACAGAELMSETVWYRDTPRFGGISAIEVDENGSSFVAMSDKAHVIRGTLVRSEGEISDIESGALRKLKNRWERNLWTGYNDSEGLAIDENGRLYVSFEGPARVWFYADERSAAVEPRAHPDFENMQDNSSLEALAIDQEGWVYTLAERSGRITRPFQVYRTKGLDWEKSFQIPRRAPFLPVGADIGPDGLFYLLERDFTGIGFRSRVRRFDLEGGNEETLLETANATHDNLEGIAIWRDPEGYIRIVMVSDDNFKWYQQTEIVEYRLTDDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-09-29" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q5X3</accession>
    <name>A0A1M5Q5X3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Tetratricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2050</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09149.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900808.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH09149">
        <property type="protein sequence ID" value="SHH09149"/>
        <property type="gene ID" value="SAMN05444003_2050"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="41"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH09149.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="455" mass="50684" checksum="636F94A66903932A" modified="2017-03-15" version="1">MAQNTENKSLKRRAIEAHRAGDLQRAQKFYAAHLATHHTDAGALSNLGVLNRSLGRHHVALELQRKAYHIDPDDKGVRTNLANILSDLGDYDGSISLRTALLAKDPDHLNQLAMIGRCHRGKGAYDAAIAHLKDALKKYPDDPELNMQLAFACLGAGDHVSGFEAYRARWTAGELTPRNLEIPEWSGQPLDGKTVVVLPEQGFGDAVFYMRFLLILKDLGATVRVCAEAPVLPLFAELEDADEVVLFVPENIVGDYWVNLIDLALYHFRSSDDWPDPTRLTVPDTSRQRARERVAPFDEMFRIGVVWSGSETYKGNAFRSFQPMEFTTLAALPNVQLFSLYKGKGMRAFEDAGLSGLIVDAASDDRHFGDCAATMMQMDLVITSDTATAHIAGSLGVPTWVLLHWDPFWVWRHSCDATDWYPSVRLFRQDQPQDWAGVFAKVRTALTTELAARHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q6L8</accession>
    <name>A0A1M5Q6L8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Putative thiamine transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2075</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09648.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900830.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2075"/>
    <dbReference type="EnsemblBacteria" id="SHH09648">
        <property type="protein sequence ID" value="SHH09648"/>
        <property type="gene ID" value="SAMN05444003_2075"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="63"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="100"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="150"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="211"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="251"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="296"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="363"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="397"/>
            <end position="422"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="428"/>
            <end position="447"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="484"/>
            <end position="508"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="528"/>
            <end position="555"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="59"/>
            <end position="274"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH09648.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="564" mass="60295" checksum="1C3250BFD532041B" modified="2017-03-15" version="1">MTKHRFLPALPLLTVLVMLGPVLAGLWGTVLPAFGHFPVAGLTGPNLSGFQSLLDWPGLPRSVLLSVFTGFASTLIALSIVMLVTAGWSGTKAFQTLERLLSPLLSVPHAAAAFGLAFLIAPSGWLSRLFSPWLTGWDRPPDLLIVNDQWGLAMTTGLVVKEVPFLLLMTLAALGQAEAARSRTIASALGYGRVTGWLKTVFPRVYAQIRLPVYVVLAYAMSVVDVAVILGPNTPSTLSVQIVRWMADPDLALRVQAASAALLQLSLVIGALVIWRVGERAIGWLGMMWIAKGNRGALDTVAAGISLALATAAALAIFLGLLVLLVWSFAGFWGFPDALPQSFTFKNWMRHSEGVLEAVGETAAIAVPVTLAALILTIGCLEAEYRYGLRLSNRGIWLLYLPLLLPQTAFLPGLQTFMLTIGVDVGRVPVMATHLVFVLPYVFLSLADPFRAWDTRIGTIASALRASPDGVLWRVRVPMLLRPILTAAAVGLAVSVGQYLATLLIGGGRVQTLTTEAVALSSGGDRRAIGVYGLMQTSAALLPFALALLIPALAWRNRRGLRHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q6Q9</accession>
    <name>A0A1M5Q6Q9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">D-galactose 1-dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2080</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09745.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900835.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2080"/>
    <dbReference type="EnsemblBacteria" id="SHH09745">
        <property type="protein sequence ID" value="SHH09745"/>
        <property type="gene ID" value="SAMN05444003_2080"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000683">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01408">
        <property type="entry name" value="GFO_IDH_MocA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GFO_IDH_MocA" evidence="1">
        <location>
            <begin position="6"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH09745.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="303" mass="32787" checksum="3C5324A297FE8974" modified="2017-03-15" version="1">MTAPICLVGIGKIAKDQHVPAIAGSADWDLAATVSRAGTVNGVPAYQDFAQMLVERPEIEVISLCLPPVPRFDYAKAAISAGRHVMLEKPPGATIAEVQELQRLAGEAGVCLFATWHSRMACGVAAAKDWLAGRNVLGAQIVWKEDVRRWHPGQEWVFEPGGMGVFDPGINALSILTEILPEAVFLRSAELEFPENRQTPIAAKLKFSGNVSADLDWRQEGPQTWQIKVQTADGDVILDAGGSLLSIGGEAIDVGENREYPALYDRMAELVQSGQSDVDLAPMIHVSDALTLGRRTIVEPFHF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QHC3</accession>
    <name>A0A1M5QHC3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2124</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH13545.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH13545">
        <property type="protein sequence ID" value="SHH13545"/>
        <property type="gene ID" value="SAMN05444003_2124"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH13545.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="56" mass="6231" checksum="B3C9F204ADE8E599" modified="2017-03-15" version="1">MNASLLRGRLQVRILPGSPKPPEKYGLFTLRCAEACKKSRQLLSVVRDFGTDGRLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QIT8</accession>
    <name>A0A1M5QIT8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Carbohydrate ABC transporter substrate-binding protein, CUT1 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2119</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial solute-binding protein 1 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH13443.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901455.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2119"/>
    <dbReference type="EnsemblBacteria" id="SHH13443">
        <property type="protein sequence ID" value="SHH13443"/>
        <property type="gene ID" value="SAMN05444003_2119"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006059">
        <property type="entry name" value="SBP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13416">
        <property type="entry name" value="SBP_bac_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0574">Periplasm</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012680331" evidence="4">
        <location>
            <begin position="23"/>
            <end position="436"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH13443.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="436" mass="46918" checksum="F637CBF56203C5AE" modified="2017-03-15" version="1">MKKLLIGAIAGSTLLSPIAAMAQTEVQFWHAFTGRLGELVAAQVEEFNASQSDYVVVQSHKGNYSETLNAGIAAFRAQEQPHILMVFEVGTATMMAAEGAVRPVYEVMGESGATFDPDAYIGAVKGYYTSTDGDMLSLPFNSSTPVLWVNRNAFEAAGVDPDMDLSTWENVGAALDALKAGGEDCPLVTAWQSWIHLENFSAYHDVPFASKDNGFSGLDTELMLNGPAQIAHLTAMQEWAQDGKFIYTGRRNEGGANFRAGECALFTESSAGYAGISSEAEFDFDVRPLPYWKAVADEPQNTIIGGASLWVMAGHDAEEYKGAGEFLSFLSSSDVQASWHQNTGYLPITAEAGEATKAAGFYEANPGTDIAVMQMTANEPTANSKGLRLGSFDQIRGIIDEELEAIWSGDKSPQEAMDSAKERGDALLRRFEQANG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QIW7</accession>
    <name>A0A1M5QIW7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Carbohydrate ABC transporter membrane protein 1, CUT1 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2120</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH13463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900921.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2120"/>
    <dbReference type="EnsemblBacteria" id="SHH13463">
        <property type="protein sequence ID" value="SHH13463"/>
        <property type="gene ID" value="SAMN05444003_2120"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="71"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="108"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="156"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="201"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="267"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="71"/>
            <end position="283"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH13463.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="293" mass="32625" checksum="C5F214A55943E0DA" modified="2017-03-15" version="1">MEKRVTFRGWLLPILLIAPQVIISAVFFFYPAGQAIWQSLFIPDPFGLSSQFVGFGNFEFLLSDKFYRKSFLTTAIFSILVTLCSMIPALFLAVIADRLIKGSGVYRTMLIWPYAVAPAVAGVLWLFMFNTRVGVVSWYLGQLGYDWNHVLNGGEAMGLVVVASAWGRISYNFLFFFAALQSVPRSVIEAAAIDGAHFWRRFFGIVLPLITPTAFFLLVVNVVYAFFETFGVIHTITAGGPQQSTTILVYKVFSDGFVGQDLGSSSAQSVILLVVVGLLTVIQFKYVEKRVHY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QJ27</accession>
    <name>A0A1M5QJ27_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Lipopolysaccharide export system protein LptA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2153</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14122.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900967.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2153"/>
    <dbReference type="EnsemblBacteria" id="SHH14122">
        <property type="protein sequence ID" value="SHH14122"/>
        <property type="gene ID" value="SAMN05444003_2153"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001530">
        <property type="term" value="F:lipopolysaccharide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015920">
        <property type="term" value="P:lipopolysaccharide transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014340">
        <property type="entry name" value="LptA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005653">
        <property type="entry name" value="OstA-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03968">
        <property type="entry name" value="LptD_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03002">
        <property type="entry name" value="outer_YhbN_LptA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0574">Periplasm</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012793492" evidence="3">
        <location>
            <begin position="22"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="domain" description="OstA-like_N" evidence="4">
        <location>
            <begin position="39"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF03968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH14122.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="161" mass="16253" checksum="A37225210A24B50A" modified="2017-03-15" version="1">MTLFRILIASLLISSASAAPAQTSIDLGGIAANAFLPVEISADSLSVDQDTGKATFSGNVVIGQGDLRMSAGEVEVVYAEGAGQIASLKASGGATFVTATEAAEAETAEYNLETGSLILTGDVLLTQGSSAISAERMAINLNTGSAELTGRVRTIIQQSGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QJN0</accession>
    <name>A0A1M5QJN0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">UTP--glucose-1-phosphate uridylyltransferase</fullName>
            <ecNumber evidence="3 5">2.7.7.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">UDP-glucose pyrophosphorylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2161</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>alpha-D-glucose 1-phosphate + H(+) + UTP = diphosphate + UDP-alpha-D-glucose</text>
            <dbReference type="Rhea" id="RHEA:19889"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:46398"/>
            <dbReference type="ChEBI" id="CHEBI:58601"/>
            <dbReference type="ChEBI" id="CHEBI:58885"/>
            <dbReference type="EC" id="2.7.7.9"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the UDPGP type 2 family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.9" evidence="3 5"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14302.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900975.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2161"/>
    <dbReference type="EnsemblBacteria" id="SHH14302">
        <property type="protein sequence ID" value="SHH14302"/>
        <property type="gene ID" value="SAMN05444003_2161"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003983">
        <property type="term" value="F:UTP:glucose-1-phosphate uridylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006011">
        <property type="term" value="P:UDP-glucose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02541">
        <property type="entry name" value="UGPase_prokaryotic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005771">
        <property type="entry name" value="GalU_uridylyltTrfase_bac/arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005835">
        <property type="entry name" value="NTP_transferase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43197">
        <property type="entry name" value="PTHR43197"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00483">
        <property type="entry name" value="NTP_transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01099">
        <property type="entry name" value="galU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="NTP_transferase" evidence="6">
        <location>
            <begin position="12"/>
            <end position="269"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000872"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006890"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012415"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00019048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU361259"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH14302.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="297" mass="32037" checksum="A4AD3612EA610E13" modified="2017-03-15" version="1">MNRKVTKAIFPVAGLGTRFLPATKSVPKEIMTLVDRPLIQYAIDEARAAGITEFIFVTSRGKSALEDYFDHAPDLEASLRAKGKNDLLRILENTNMDSGAIAYIRQHKAMGLGHAVSCARRLIGDEPFAVILPDDVIAAERPCLQQMVEAYQDTGGAMVAAMEVAPEQISSYGVLDVETDLGKVMKVKAMVEKPAAEKAPSNLAVIGRYILTPDVLNNMDSIGEGAGGEIQLTDAIAAEITQGRDVFGYCFDGQRYDCGSKAGYLEATVAFALAHPELKDGFADYLDNMTAVRKAAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QJZ0</accession>
    <name>A0A1M5QJZ0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2168</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14444.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH14444">
        <property type="protein sequence ID" value="SHH14444"/>
        <property type="gene ID" value="SAMN05444003_2168"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="15"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="44"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH14444.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="77" mass="8593" checksum="E918025538276332" modified="2017-03-15" version="1">MGVTQKYNAALGTNFALTVLSTLAYALIIFCVVGLVLSRFGLPFGVTSMVIVLFELPAFFGMLLIARRMFKKDHDFW</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QM48</accession>
    <name>A0A1M5QM48_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">23S rRNA m(5)U-1939 methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2201</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15142.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901041.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2201"/>
    <dbReference type="EnsemblBacteria" id="SHH15142">
        <property type="protein sequence ID" value="SHH15142"/>
        <property type="gene ID" value="SAMN05444003_2201"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008173">
        <property type="term" value="F:RNA methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006396">
        <property type="term" value="P:RNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010280">
        <property type="entry name" value="U5_MeTrfase_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11061">
        <property type="entry name" value="PTHR11061"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05958">
        <property type="entry name" value="tRNA_U5-meth_tr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51687">
        <property type="entry name" value="SAM_MT_RNA_M5U"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4 5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 4 5" id="KW-0808">Transferase</keyword>
    <feature type="active site" description="Nucleophile" evidence="4">
        <location>
            <position position="357"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="236"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="263"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="283"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="331"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH15142.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="400" mass="43455" checksum="52651EBA5CC68462" modified="2017-03-15" version="1">MPEVIETLTHHGLGRTPSGDLVPNVLPGETIEVADGGKVRVLEPSTDRVNPPCRHSKSCGGCSVMHASDEFVAKWKTGIVESALSARGLETEILPIYTSPAESRRRAKFSGRRTKKGAIVGFHGASSAVLVETPDCKLVVSELLEVKEGLLELVPLGASRKSEVQFTVNQSEAGPDVWVQADKPVDNALRVQLANIAQKHQFARLSWNDETIVTLKPPFVTMGPAKVVPPFGAFLQATTDAENVMVAAVKNCLGDAKRVADLFSGCGTFSFPLAETAEVHAVEGEADLIASLDTAWRQTAGLKKVSTEVRDLFRRPLEPDELNKFEAVVLDPPRAGAEAQIQCLTKAHISEIAMVSCNPITFARDAETLIDSGYQMNWVRPIDQFRWSAHVELVGRFTRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QQ53</accession>
    <name>A0A1M5QQ53_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Thioredoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2240</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the thioredoxin family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15909.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901483.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2240"/>
    <dbReference type="EnsemblBacteria" id="SHH15909">
        <property type="protein sequence ID" value="SHH15909"/>
        <property type="gene ID" value="SAMN05444003_2240"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015035">
        <property type="term" value="F:protein-disulfide reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005746">
        <property type="entry name" value="Thioredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017937">
        <property type="entry name" value="Thioredoxin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00085">
        <property type="entry name" value="Thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000077">
        <property type="entry name" value="Thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01068">
        <property type="entry name" value="thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00194">
        <property type="entry name" value="THIOREDOXIN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="3 5" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin" evidence="6">
        <location>
            <begin position="1"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="disulfide bond" description="Redox-active" evidence="5">
        <location>
            <begin position="31"/>
            <end position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR000077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000077-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH15909.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="106" mass="11373" checksum="6D1DF1C54D462BB2" modified="2017-03-15" version="1">MATVAVSDATFDAEVRQSDIPVVVDFWAEWCGPCKQIGPALEELSDEMDGKVKIVKVNVDENPNSPAQMGVRGIPALFIFKDGEVISNRAGAAPKAALQGWIEESV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QRA8</accession>
    <name>A0A1M5QRA8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2279</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16665.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901161.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2279"/>
    <dbReference type="EnsemblBacteria" id="SHH16665">
        <property type="protein sequence ID" value="SHH16665"/>
        <property type="gene ID" value="SAMN05444003_2279"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032823">
        <property type="entry name" value="BCA_ABC_TP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12399">
        <property type="entry name" value="BCA_ABC_TP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="21"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="53"/>
            <end position="60"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH16665.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="272" mass="30304" checksum="A6DA9A636100BC8D" modified="2017-03-15" version="1">MKDTVDSYVTADGRTIGGVMMEMRNITLRFGGVKAISDISFDIREGEIRAIIGPNGAGKSSMLNVISGFYHPQEGEVWFRGAKRPTMKPYQVAQQGIARTFQNIALFEGMTVLDNVMTGRLNKMKVGMFGQAIWKGAAEREEVENREAVERVIDFLEIQAIRKTPVGRLPYGLKKRVELARALAAEPKLLLLDEPMAGMNVEEKEDMSRFILDVNDEFGTTIALIEHDMGVVMDLSDRVVVMDYGRKIGDGTPDEVRNNQDVIDAYLGVSHD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QUX3</accession>
    <name>A0A1M5QUX3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Sulfur carrier protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2338</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17954.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901261.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2338"/>
    <dbReference type="EnsemblBacteria" id="SHH17954">
        <property type="protein sequence ID" value="SHH17954"/>
        <property type="gene ID" value="SAMN05444003_2338"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016155">
        <property type="entry name" value="Mopterin_synth/thiamin_S_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010035">
        <property type="entry name" value="Thi_S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003749">
        <property type="entry name" value="ThiS/MoaD-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02597">
        <property type="entry name" value="ThiS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54285">
        <property type="entry name" value="SSF54285"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01683">
        <property type="entry name" value="thiS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH17954.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="65" mass="6746" checksum="C4FBBCD033B6D8C7" modified="2017-03-15" version="1">MKLLLNGDPITTEATTLDAVLDENGYAEATVATAVNGDFVPATLRSSHTLTEGDQIEVLAPMQGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QVT8</accession>
    <name>A0A1M5QVT8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2352</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18264.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901285.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2352"/>
    <dbReference type="EnsemblBacteria" id="SHH18264">
        <property type="protein sequence ID" value="SHH18264"/>
        <property type="gene ID" value="SAMN05444003_2352"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002656">
        <property type="entry name" value="Acyl_transf_3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043968">
        <property type="entry name" value="SGNH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01757">
        <property type="entry name" value="Acyl_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19040">
        <property type="entry name" value="SGNH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="31"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="72"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="99"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="162"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="190"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="222"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="244"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="275"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="311"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="347"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl_transf_3" evidence="2">
        <location>
            <begin position="6"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="domain" description="SGNH" evidence="3">
        <location>
            <begin position="417"/>
            <end position="629"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01757"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF19040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH18264.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="645" mass="71784" checksum="C85906BD3B004395" modified="2017-03-15" version="1">MKYHPEIDGLRTVAVAPVILFHAGFSGFGGGYVGVDVFFVISGFLITSILISDLEQGTFSILKFYERRMRRILPALFVVVLACIPFAWVWLLPSAFKDFSQSVAAVGLFASNFLFWFEVDYFDTSAERKPLLHTWSLAVEEQYYIVFPVLLAVIWRLGQRSVFGIISVLALLSLAYTVVARSFGWASDAALFYLPFSRAWELFAGSLCAMIMRRRSLSGNDAYAAVGLGLIIFAIFFFDKHTPFPSAYTVVPIVGTALVLLFARPEGFVGRFLSVRPMVQIGLISYSAYLWHQPLFAFARVRSLEDPSHMTMGALAVLTLGLAYLTWKFVEQPFRKKPSPWLPKRGVLLSVSAMCLASLVVFGTYGHVRNGFSERFQIAGWSQYEFDRSSLQVQSWRLLRNAAGNNNYGVDFNAYDQTEWFPDTDRPLILVVGNSHSKGTYNALTFSQAVVDSANVARFGTQIFDLLDPIHPFFASPNFEAADVILISTRYTEDDIAALPAVVSELRDAGKKVLVVNNTPEFLDSGNATLADSVLLSETSAGSDKAEILDKIATEHWDAFVENDPVSEIRRAIAHVAEENDIPLLDRADLICDRSSMKCFAVDEEGQKIIYDYGHITLAGAAFLGRRMDKGGWLDPIMQPTVVSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QX61</accession>
    <name>A0A1M5QX61_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2356</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18340.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901292.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2356"/>
    <dbReference type="EnsemblBacteria" id="SHH18340">
        <property type="protein sequence ID" value="SHH18340"/>
        <property type="gene ID" value="SAMN05444003_2356"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031177">
        <property type="term" value="F:phosphopantetheine binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="ACP-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020806">
        <property type="entry name" value="PKS_PP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009081">
        <property type="entry name" value="PP-bd_ACP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006162">
        <property type="entry name" value="Ppantetheine_attach_site"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00550">
        <property type="entry name" value="PP-binding"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SMART" id="SM00823">
        <property type="entry name" value="PKS_PP"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47336">
        <property type="entry name" value="SSF47336"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50075">
        <property type="entry name" value="CARRIER"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00012">
        <property type="entry name" value="PHOSPHOPANTETHEINE"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0436">Ligase</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="1 3" id="KW-0596">Phosphopantetheine</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="839"/>
            <end position="857"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="869"/>
            <end position="891"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="903"/>
            <end position="926"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="933"/>
            <end position="954"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="974"/>
            <end position="993"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="1005"/>
            <end position="1024"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="1039"/>
            <end position="1058"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="1070"/>
            <end position="1089"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="1109"/>
            <end position="1127"/>
        </location>
    </feature>
    <feature type="domain" description="Carrier" evidence="6">
        <location>
            <begin position="431"/>
            <end position="506"/>
        </location>
    </feature>
    <feature type="domain" description="Carrier" evidence="6">
        <location>
            <begin position="509"/>
            <end position="596"/>
        </location>
    </feature>
    <feature type="domain" description="Carrier" evidence="6">
        <location>
            <begin position="600"/>
            <end position="675"/>
        </location>
    </feature>
    <feature type="domain" description="Carrier" evidence="6">
        <location>
            <begin position="679"/>
            <end position="754"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="757"/>
            <end position="784"/>
        </location>
    </feature>
    <feature type="modified residue" description="O-(pantetheine 4'-phosphoryl)serine" evidence="3">
        <location>
            <position position="466"/>
        </location>
    </feature>
    <feature type="modified residue" description="O-(pantetheine 4'-phosphoryl)serine" evidence="3">
        <location>
            <position position="544"/>
        </location>
    </feature>
    <feature type="modified residue" description="O-(pantetheine 4'-phosphoryl)serine" evidence="3">
        <location>
            <position position="635"/>
        </location>
    </feature>
    <feature type="modified residue" description="O-(pantetheine 4'-phosphoryl)serine" evidence="3">
        <location>
            <position position="714"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022450"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00258"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH18340.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="1136" mass="122755" checksum="9598169904AF1630" modified="2017-03-15" version="1">MADHSHPDYRTGLIEVVAYSAANSRAYLSAVFAAYRSGQVVLALPHGQERRTVPGTKILERKVFDDDDGWFSDKLILDTRDVPAQISLSSGTTGRPKAILLSHRALSDVVQRINVAMQVDDSIREYVGVPVTFSFGFGRCRAVAAAGGQSYLPQHGFDPNEIRRMLDEGEINAISAVPTLWRIVLANPDIIGDAGRRVKWIEIGSQYMSAEEKAAMKELFPQATIVQHYGLTEASRSTLLDISSSAHALLESVGTPTGDTEIEIKDDLIRVRGPHLAEGLVTGAGVKKIVDEDGWLTTSDRGELRDGHLFYLGRADELINSGGLKIDPTLFEQRLIADLHQTVELGVGRTTDPMRGEKVLIVYSGSEDLVADIEKAAKSVGGDFGLTGTGAVEIRRVAEIPKTATGKVQRGLLQDLEAIGDAQTLGGSADDTSADQRDRLIALWQEVLGVERVETDQSFYDLGGDSLSALTLIIRMETLGLAPDLARGIFDGRTIDDIAGKGQTAPASNQLTHEAAELQKIWAEVLGVDQVATDQSFYDLGGDSLSALTLIMRMEAAGLSTEIARGIFDGKSIDGILGKSETPDINNLQSSLESDTMERVPVSEGTAELRKLWSEVLGVDDIPLDKSFYDLGGDSLSALTVIMRMEALGLAPDVARSIFDGKTIQQIVGSTATEPNEDAGSSEEIERLKVIWSEVLGVETISIDQSFYDLGGDSLSALTLIMRMEAQGMSAEIARRIFDGKTIRDLVGGANVAPAPKPIERSPVATPKADATPLASPTAPTAPSLSLSDTMNAVHATRGLLVLWVIVVHWLPGVLGRLTPNAEEIYQSLIPFLRFGTPGFAMVFGVGIGALGITQYMRNKEQFKKSSQFNTRLIVAGVLVFAAFKFLSRWINGTIDPDMLPSILFYSAISYYAIAMLALPAIMRVVTVGPNRLLTIAATFVGCLIIHDMMQTWVAPLELSGFAELGKILLSAKYGFFRMTSFVMVGVALGWIMRQNHGQPGMARDFCVAGIVTISLGFAVLWQARPETMFDNFSLVEPWHLTIYSGVLMTLISGFCVLNREGSKGISKPFRLLNAFAIASGILALPMFVGHGIVIPFKNILAGLGAPEPIALSVALAAFLIPVGFGYSRLMRFLYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QZV5</accession>
    <name>A0A1M5QZV5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Phytoene desaturase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2412</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1 4">Carotenoid biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the carotenoid/retinoid oxidoreductase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19396.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901372.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2412"/>
    <dbReference type="EnsemblBacteria" id="SHH19396">
        <property type="protein sequence ID" value="SHH19396"/>
        <property type="gene ID" value="SAMN05444003_2412"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00232"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016117">
        <property type="term" value="P:carotenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002937">
        <property type="entry name" value="Amino_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014105">
        <property type="entry name" value="Carotenoid/retinoid_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008150">
        <property type="entry name" value="Phytoene_DH_bac_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01593">
        <property type="entry name" value="Amino_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02734">
        <property type="entry name" value="crtI_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00982">
        <property type="entry name" value="PHYTOENE_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0125">Carotenoid biosynthesis</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amino_oxidase" evidence="5">
        <location>
            <begin position="21"/>
            <end position="492"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006046"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU362075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH19396.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="513" mass="56575" checksum="23D041CA18B81CEC" modified="2017-03-15" version="1">MESTHQIETADNRAVVVGAGLGGLSAAMRLGAKGYSVTVVDRLDKVGGRGSSISKDGHRFDLGPTIVTVPRVFEKLWAECGRDFRRDVDLRPLEPFYEIRWPDGSVFTAQSDQDAMLEEVKRLSPRDVNGYKRFLKDSKRRYVVGFEGMVAKPMHKLWDTIKVLPEFAVLRADRSILGLAKARVKDHRLRMALSFHPLFIGGDPMTVTSMYALVSHLEATFGVHYAMGGVQAIADAMANVVRSQGGQILLGQDVEGINVTHGHATGVNLKEGRTLAAPLVVSNADAGHTYKHLLRQPRKTWTDAKLSRSRWSMGLFVWYFGTKGTRHKWQDVGHHTILSGPRYEGLLKDIFIKGRLADDMSLYVHRPSVTDPTVAPEGDDTFYALSPVPHLGFKNPVNWAAVRESYKDKVAAVLEDFIPGFRDHISTEVVFTPEEFRDRYLSPNGSGFSIEPRILQSAWFRPHNISEEAKGLYLVGAGTHPGAGLPGVVSSAEVLGKLVPDAPVVADMKVAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R0R4</accession>
    <name>A0A1M5R0R4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 16">Cytochrome b</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="21" type="ORF">SAMN05444003_2423</name>
    </gene>
    <organism evidence="21 22">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="21 22" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="21 22">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 16">Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="16">
            <name>heme b</name>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
        </cofactor>
        <text evidence="16">Binds 2 heme groups non-covalently.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="15">
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </cofactor>
        <text evidence="15">Binds 2 heme groups non-covalently.</text>
    </comment>
    <comment type="subunit">
        <text evidence="16">The main subunits of complex b-c1 are: cytochrome b, cytochrome c1 and the Rieske protein.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cell membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="16">Belongs to the cytochrome b family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19620.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901392.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2423"/>
    <dbReference type="EnsemblBacteria" id="SHH19620">
        <property type="protein sequence ID" value="SHH19620"/>
        <property type="gene ID" value="SAMN05444003_2423"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045275">
        <property type="term" value="C:respiratory chain complex III"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008121">
        <property type="term" value="F:ubiquinol-cytochrome-c reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022904">
        <property type="term" value="P:respiratory electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00290">
        <property type="entry name" value="cytochrome_b_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00284">
        <property type="entry name" value="Cytochrome_b_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.810.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005798">
        <property type="entry name" value="Cyt_b/b6_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036150">
        <property type="entry name" value="Cyt_b/b6_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005797">
        <property type="entry name" value="Cyt_b/b6_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027387">
        <property type="entry name" value="Cytb/b6-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030689">
        <property type="entry name" value="Cytochrome_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016174">
        <property type="entry name" value="Di-haem_cyt_TM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00032">
        <property type="entry name" value="Cytochrom_B_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00033">
        <property type="entry name" value="Cytochrome_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF038885">
        <property type="entry name" value="COB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81342">
        <property type="entry name" value="SSF81342"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81648">
        <property type="entry name" value="SSF81648"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51003">
        <property type="entry name" value="CYTB_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51002">
        <property type="entry name" value="CYTB_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 16" id="KW-0249">Electron transport</keyword>
    <keyword evidence="6 15 16" id="KW-0349">Heme</keyword>
    <keyword evidence="12 15" id="KW-0408">Iron</keyword>
    <keyword evidence="13 18" id="KW-0472">Membrane</keyword>
    <keyword evidence="9 15" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="22" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 16" id="KW-0679">Respiratory chain</keyword>
    <keyword evidence="8 16 18" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="11 18" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5 16" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="18">
        <location>
            <begin position="44"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="18">
        <location>
            <begin position="95"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="18">
        <location>
            <begin position="129"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="18">
        <location>
            <begin position="155"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="18">
        <location>
            <begin position="194"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="18">
        <location>
            <begin position="253"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="18">
        <location>
            <begin position="296"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="18">
        <location>
            <begin position="330"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="18">
        <location>
            <begin position="365"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="18">
        <location>
            <begin position="391"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="domain" description="CYTB_NTER" evidence="19">
        <location>
            <begin position="15"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="domain" description="CYTB_CTER" evidence="20">
        <location>
            <begin position="234"/>
            <end position="422"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="17">
        <location>
            <begin position="424"/>
            <end position="446"/>
        </location>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="15">
        <location>
            <position position="97"/>
        </location>
        <ligand>
            <name>heme b</name>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
            <label>b562</label>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="15">
        <location>
            <position position="111"/>
        </location>
        <ligand>
            <name>heme b</name>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
            <label>b566</label>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="15">
        <location>
            <position position="198"/>
        </location>
        <ligand>
            <name>heme b</name>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
            <label>b562</label>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="15">
        <location>
            <position position="212"/>
        </location>
        <ligand>
            <name>heme b</name>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
            <label>b566</label>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="217"/>
        </location>
        <ligand>
            <name>a ubiquinone</name>
            <dbReference type="ChEBI" id="CHEBI:16389"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002444"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022660"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PIRSR" id="PIRSR038885-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="PIRSR" id="PIRSR038885-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="RuleBase" id="RU003385"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="19">
        <source>
            <dbReference type="PROSITE" id="PS51002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="20">
        <source>
            <dbReference type="PROSITE" id="PS51003"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="EMBL" id="SHH19620.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="22">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="446" mass="50585" checksum="10895C26EB631CE3" modified="2017-03-15" version="1">MAGIPHDHYEPKSDFEKGMQKRLPVIGLLYDTIMIPTPKNLNWMWIWGIVLTFTLALQIITGVVLVMHYTPHVDMAFNSIEHIMRDVNGGHMIRYFHMNGASLFFFAVYLHIFRGLYYGSYKAPREVTWIIGMLIYLLMMGTAFMGYVLPWGQMSFHGTAVITGLFGAIPFIGDSIQTWLLGASSVGQPALNRFFSLHYLLPFLIAGLVIVHIWAFHTTGNNNPTGVEVRRTSKEDAAKDTLPFWPYFVIKDLFALAIILVLFMAVVGFMPNYLGHPDNYIPANPLATPAHIVPEWYFLPFYAILRAFTADVWVVMFANWISFGIIDAKFFGVLAMFGAIAVMALAPWLDTSSVRSGRYRPMFKWWFWLLVVDFIVLMWVGARPAEFPYDWIALIASTYWFAYFLVILPLLGVIEKPDTPPATIEEDFDSHYPAKASGDAAATPAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R225</accession>
    <name>A0A1M5R225_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Multidrug efflux pump</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2453</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH20221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901431.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2453"/>
    <dbReference type="EnsemblBacteria" id="SHH20221">
        <property type="protein sequence ID" value="SHH20221"/>
        <property type="gene ID" value="SAMN05444003_2453"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2090.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027463">
        <property type="entry name" value="AcrB_DN_DC_subdom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001036">
        <property type="entry name" value="Acrflvin-R"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32063">
        <property type="entry name" value="PTHR32063"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00873">
        <property type="entry name" value="ACR_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00702">
        <property type="entry name" value="ACRIFLAVINRP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82714">
        <property type="entry name" value="SSF82714"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="332"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="357"/>
            <end position="377"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="383"/>
            <end position="407"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="428"/>
            <end position="448"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="460"/>
            <end position="487"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="530"/>
            <end position="550"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="856"/>
            <end position="876"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="883"/>
            <end position="903"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="909"/>
            <end position="930"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="959"/>
            <end position="982"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="1002"/>
            <end position="1025"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH20221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="1048" mass="112892" checksum="DB12530F713405BB" modified="2017-03-15" version="1">MSAFIDAAFSRSRLVVLLLILLFSVGLISYVSIAKESWPEIVRPTFFINTGLDGISPSDSERLLVEPLERELGSLPGLDRIESFAGEGSAYVIAEFRPGGNVDEALDNVREAVDRVQGDMPSEAYDITVAELDMSQLPIMLLILSGPVPERTLNQLADSVEEVVSSIDGVLEVGVVGKRSEFIEVLIDPTVFQTYSLSYDEVISQITRNNQLIAAGAIDSGTGRVVLKVPGLIEDLSDVLNMPIKVRDGTVVTFEDVAEIRRTFREPTSFSRINGQPSLTIEVVKNSGANIISTADEVRQRVNALQADWPESVQMDILQDQSEDVSTVFFELQANVIAAVVLVFISITFAMGFRSAILVGLSIPGAFLTGVAALWALGYTLSFIVLFALILVVGMLVDGAIVTTELADRRLQDGDEPKEAYSFAAKRMAWPIIASAATTISVFVPLLFWNSFLGQIMKPLPVTLIVTLTASVFMALIFIPVVGGLIGRAQPRSARAKEALYHSEYGDPRKIGGMTGTYIKVLRWAIIRPGAVVLGAVALLLASFGFYAQMGNGVTLFPSSEPNVIQLQISSRDNISIYERDRLVRLVEDRLWKYDEASSIYAQSSLPAGRGDEETIGTINLSLLDWDLRRKAALIAEDIREDVSDIPGISVQVSTPDGGPTAGKPISIQIIGGNKFSQSAAVDVIKSAMASVGGFVDITDTKSLPGVELSINVDRVEAARYGADVNILGQSVQLLTQGIEVASYRPEDATESLSIRVRFPSENRSLAELGNLRVPTQTGLVPVSNFVGFQPTERLGAIRRIDENPVVTIEANIAPGLLVADQNRKLLAEIRSIGMPEGVDYKFGGDAQDMAETFTFLLGAFISAIFLMFMVLLVQFNRFDQALIILSAIVFSVGGVLIGLLVMGRPFGLVMSGIGVIALAGIVVNNNIVLIDTFNQLIARGQPTLEAALRTGAQRLRPVMLTTITTALGLMPMVFGLSISLIDREIVQGAPSTAIWVEMSSAIVGGLLVATVLTLVVTPAMLVLAERKSDKAKAQEPNLGTPDALDLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RBT5</accession>
    <name>A0A1M5RBT5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Myo-inositol-1(Or 4)-monophosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2485</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23509.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901561.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2485"/>
    <dbReference type="EnsemblBacteria" id="SHH23509">
        <property type="protein sequence ID" value="SHH23509"/>
        <property type="gene ID" value="SAMN05444003_2485"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046855">
        <property type="term" value="P:inositol phosphate dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046854">
        <property type="term" value="P:phosphatidylinositol phosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000760">
        <property type="entry name" value="Inositol_monophosphatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020550">
        <property type="entry name" value="Inositol_monophosphatase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00459">
        <property type="entry name" value="Inositol_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00377">
        <property type="entry name" value="IMPHPHTASES"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00630">
        <property type="entry name" value="IMP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH23509.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="257" mass="27551" checksum="4A2DCE137B0E9DA3" modified="2017-03-15" version="1">MPESDLDLLLRAAKEAGEIALSHFGADPKIWEKDDNAGPVTEADLSVNAHLQSALTSARPDFGWLSEETEDGSERLAKDKLFIVDPIDGTRAFIDRSENWAHSLAIVENGTPTAGVVEMPQKGLTFWATKGGGAFLNGKPIKVAPVDRIKDATVLTAKPNLRPEFWIGGKAPPFNTSFRSSLAYRLCAVASGRFDAMITLRPTWEWDVAAGTLIVEEAGGQAFDQTGSALIYNNPQPKLSGVLAGGPVVPKLVSQLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RCT5</accession>
    <name>A0A1M5RCT5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2507</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23950.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901595.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH23950">
        <property type="protein sequence ID" value="SHH23950"/>
        <property type="gene ID" value="SAMN05444003_2507"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="52"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="87"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH23950.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="130" mass="13842" checksum="D00D48FC62D8FA5F" modified="2017-03-15" version="1">MTTLDTNIGKNKPALLRVIFILNALKILLSFGLFIGFSYYGLEVGDKGGDGMATIILWTTLGYIVTFAVMVASILKRSILGARLAFVADVLISLPAQAFIGIVVAIISIGLSFTGPVKAFFLAEVISARD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RCZ8</accession>
    <name>A0A1M5RCZ8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">tRNA pseudouridine synthase B</fullName>
            <ecNumber evidence="4">5.4.99.25</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">tRNA pseudouridine(55) synthase</fullName>
            <shortName evidence="4">Psi55 synthase</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">tRNA pseudouridylate synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">tRNA-uridine isomerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">truB</name>
        <name evidence="7" type="ORF">SAMN05444003_2518</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 4">
            <text>uridine(55) in tRNA = pseudouridine(55) in tRNA</text>
            <dbReference type="Rhea" id="RHEA:42532"/>
            <dbReference type="Rhea" id="RHEA-COMP:10101"/>
            <dbReference type="Rhea" id="RHEA-COMP:10102"/>
            <dbReference type="ChEBI" id="CHEBI:65314"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="EC" id="5.4.99.25"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.25" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24151.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901612.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2518"/>
    <dbReference type="EnsemblBacteria" id="SHH24151">
        <property type="protein sequence ID" value="SHH24151"/>
        <property type="gene ID" value="SAMN05444003_2518"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106029">
        <property type="term" value="F:tRNA pseudouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031119">
        <property type="term" value="P:tRNA pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02573">
        <property type="entry name" value="PseudoU_synth_EcTruB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01080">
        <property type="entry name" value="TruB_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020103">
        <property type="entry name" value="PsdUridine_synth_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002501">
        <property type="entry name" value="PsdUridine_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014780">
        <property type="entry name" value="tRNA_psdUridine_synth_TruB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032819">
        <property type="entry name" value="TruB_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13767">
        <property type="entry name" value="PTHR13767"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16198">
        <property type="entry name" value="TruB_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01509">
        <property type="entry name" value="TruB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55120">
        <property type="entry name" value="SSF55120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00431">
        <property type="entry name" value="TruB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="TruB_N" evidence="5">
        <location>
            <begin position="32"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="domain" description="TruB_C_2" evidence="6">
        <location>
            <begin position="181"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="4">
        <location>
            <position position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000385"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01509"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF16198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH24151.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="304" mass="32752" checksum="B04BE1DA5DEC8D38" modified="2017-03-15" version="1">MGRKRKGRDISGWLIVDKPAGMTSTAVVNKVRWAMDAKKAGHAGTLDPEATGVLAVALGEATKTVPYITDALKAYEFTVRLGQATNTDDAEGEVIASSDTRPSDDDIKAALGDFIGDIMQVPPQFSAVKIDGVRAYKKARDGEEIELAARPLWVEELVMVDREDDDHVTLEMTCGKGGYVRSIARDLGETLGCFGHVRELRRIWSGPFQAEDGLSIETIDANAKTGALDAHLQSLEIGLDDLPEVRCLAESVNKLRNGNPAEVIGSDVEFGDEAWASYEGHAIAVGTYRGGLLHPTRVFNAPST</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RFT6</accession>
    <name>A0A1M5RFT6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">GTP cyclohydrolase-2</fullName>
            <ecNumber evidence="5">3.5.4.25</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">GTP cyclohydrolase II</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">ribA</name>
        <name evidence="7" type="ORF">SAMN05444003_2558</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>GTP + 4 H2O = 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)-pyrimidine + formate + 3 H(+) + 2 phosphate</text>
            <dbReference type="Rhea" id="RHEA:23704"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58614"/>
            <dbReference type="EC" id="3.5.4.25"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="5">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="5">Cofactor biosynthesis; riboflavin biosynthesis; 5-amino-6-(D-ribitylamino)uracil from GTP: step 1/4.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the GTP cyclohydrolase II family.</text>
    </comment>
    <dbReference type="EC" id="3.5.4.25" evidence="5"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24990.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2558"/>
    <dbReference type="EnsemblBacteria" id="SHH24990">
        <property type="protein sequence ID" value="SHH24990"/>
        <property type="gene ID" value="SAMN05444003_2558"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00275">
        <property type="reaction ID" value="UER00400"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003935">
        <property type="term" value="F:GTP cyclohydrolase II activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009231">
        <property type="term" value="P:riboflavin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00641">
        <property type="entry name" value="GTP_cyclohydro2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10990">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00179">
        <property type="entry name" value="RibA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032677">
        <property type="entry name" value="GTP_cyclohydro_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000926">
        <property type="entry name" value="RibA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036144">
        <property type="entry name" value="RibA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00925">
        <property type="entry name" value="GTP_cyclohydro2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF142695">
        <property type="entry name" value="SSF142695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00505">
        <property type="entry name" value="ribA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="3 5 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 5" id="KW-0686">Riboflavin biosynthesis</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="GTP_cyclohydro2" evidence="6">
        <location>
            <begin position="169"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="5">
        <location>
            <position position="288"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="5">
        <location>
            <position position="290"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="211"/>
            <end position="215"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="216"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="227"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="229"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="232"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="254"/>
            <end position="256"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="276"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="311"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="316"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022619"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00179"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00925"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH24990.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="356" mass="38983" checksum="32A12A2D22FDC2F2" modified="2017-03-15" version="1">MAFSPDNIEKLARARADLRMGVPVVMSDGVILAVETLKADRLKDLCSFGAAQLALTDWRARTLKVHVYDSDLTRIALPEDVSLSWVRAMADPADDLNMPMKGPHKMVRDDQSALARAGIQLAKSARLLPAVLCLPLDMPAGFAHQHDLTMVDQAVVLNSQLSPMQPVVHARLPMTVSDAGRLHVFRPEDGGEEHYAVEIGTPDRSKPVLARLHSACFTGDVLGSLKCDCGPQLHGALAQMGEEGQGVLLYLNQEGRGIGLANKMRAYALQDQGFDTVEANHRLGFEDDERDFRIGAEILRKLGFDQVRLMTNNPAKIARMEGCGITVTERVPLQVGRNPLNDHYLQTKAAKSGHLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RHG1</accession>
    <name>A0A1M5RHG1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aspartate/methionine/tyrosine aminotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2590</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25671.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901719.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2590"/>
    <dbReference type="EnsemblBacteria" id="SHH25671">
        <property type="protein sequence ID" value="SHH25671"/>
        <property type="gene ID" value="SAMN05444003_2590"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="1">
        <location>
            <begin position="30"/>
            <end position="372"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH25671.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="392" mass="42692" checksum="56AE17B84C236FBA" modified="2017-03-15" version="1">MNFPERFADLPDATWPRLRGLLDSTPPGGEVINMTIGEPKHDIPAFIAPALAENAAGWRGYPNNNGTPELLDAISAWIKRRYNVALGHENLMALSGTREGLYNAAMALCPETKNGHPPAILSPNPFYPVYGMASFSVGAEVVYLPADESTGHLPDFHAIDPELLDRTAIVYMCSPANPQGTVADEDYWAHLLGLAEKHDFIVFSDECYSEIYRDTPPLGALQVADKMGVDPERVVVFHSLSKRSNLAGLRSGFCAGGPKSIARIRQLRAGAGSPLPAPVQAASALAWQDEAHVEENRRLYAEKFEIADRIFAELPGYQSPDAGFFLWLPVKDGEASALKLWAETGVRVLPGAYISRDVGQGNPGRNYIRVALVAPKEDVQRGLTLLRSCLYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RIQ1</accession>
    <name>A0A1M5RIQ1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">2,3-bisphosphoglycerate-independent phosphoglycerate mutase</fullName>
            <shortName evidence="8">BPG-independent PGAM</shortName>
            <shortName evidence="8">Phosphoglyceromutase</shortName>
            <shortName evidence="8">iPGM</shortName>
            <ecNumber evidence="8">5.4.2.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">gpmI</name>
        <name evidence="14" type="ORF">SAMN05444003_2613</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>(2R)-2-phosphoglycerate = (2R)-3-phosphoglycerate</text>
            <dbReference type="Rhea" id="RHEA:15901"/>
            <dbReference type="ChEBI" id="CHEBI:58272"/>
            <dbReference type="ChEBI" id="CHEBI:58289"/>
            <dbReference type="EC" id="5.4.2.12"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="8">Binds 2 manganese ions per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 3/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Monomer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the BPG-independent phosphoglycerate mutase family.</text>
    </comment>
    <dbReference type="EC" id="5.4.2.12" evidence="8"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26134.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901910.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2613"/>
    <dbReference type="EnsemblBacteria" id="SHH26134">
        <property type="protein sequence ID" value="SHH26134"/>
        <property type="gene ID" value="SAMN05444003_2613"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00186"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046537">
        <property type="term" value="F:2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030145">
        <property type="term" value="F:manganese ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006007">
        <property type="term" value="P:glucose catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd16010">
        <property type="entry name" value="iPGM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1450.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01038">
        <property type="entry name" value="GpmI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011258">
        <property type="entry name" value="BPG-indep_PGM_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006124">
        <property type="entry name" value="Metalloenzyme"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036646">
        <property type="entry name" value="PGAM_B_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005995">
        <property type="entry name" value="Pgm_bpd_ind"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31637">
        <property type="entry name" value="PTHR31637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06415">
        <property type="entry name" value="iPGM_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01676">
        <property type="entry name" value="Metalloenzyme"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001492">
        <property type="entry name" value="IPGAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53649">
        <property type="entry name" value="SSF53649"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64158">
        <property type="entry name" value="SSF64158"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01307">
        <property type="entry name" value="pgm_bpd_ind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="7 8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6 8 11" id="KW-0464">Manganese</keyword>
    <keyword evidence="4 8 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Metalloenzyme" evidence="12">
        <location>
            <begin position="5"/>
            <end position="491"/>
        </location>
    </feature>
    <feature type="domain" description="iPGM_N" evidence="13">
        <location>
            <begin position="83"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="8 10">
        <location>
            <begin position="153"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="8 10">
        <location>
            <begin position="254"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="active site" description="Phosphoserine intermediate" evidence="8 9">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8 11">
        <location>
            <position position="13"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 11">
        <location>
            <position position="63"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="124"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="183"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="189"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="329"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 11">
        <location>
            <position position="395"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 11">
        <location>
            <position position="399"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 11">
        <location>
            <position position="436"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 11">
        <location>
            <position position="437"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 11">
        <location>
            <position position="455"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>1</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004798"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01038"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR001492-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR001492-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR001492-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF01676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF06415"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="SHH26134.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="505" mass="53621" checksum="8683BF473419E0E2" modified="2017-03-15" version="1">MTTPKPVVLCILDGWGKREETEGNAPFLAKTPNLDQVARTCPMAQLLTHGRDAGLPAGQMGNSEVGHTNIGAGRVVAMDLGQIDLAIEDGSYGEAEALQRFISVLKESGGTAHLMGVISDGGVHGHLDHLIATLKVMDAAGVPSVVHAITDGRDVAPSSALDYLKTIEANLPSSARIGTVIGRYYALDRDNRWERVEQAFNAIVLGQGATAATAGNAIEAAYAAGQTDEFIEATVIAGYAGITEGDGVFCLNFRSDRAREILAAMGNPDFEGFERALPPLASRLGMVEYSDTHNAWYETVFPKRDIKNTLGEWVAKHGKTQFRLAETEKYPHVTFFLNGGVETPYDGEDRFMPKSPKVATYDLQPEMSAGEVTDAFVAAIEKGYDLIVTNFANPDMVGHTGDLNAAIAACEAVDAGLGKVLEALDKAGGAMIITADHGNCETMIDPETGGPHTAHTTNPVPVTIVGADNVIGLRDGRLADLAPTILELMDLPQPPEMTGQSLLIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RJK3</accession>
    <name>A0A1M5RJK3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Endonuclease/Exonuclease/phosphatase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2620</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26289.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2620"/>
    <dbReference type="EnsemblBacteria" id="SHH26289">
        <property type="protein sequence ID" value="SHH26289"/>
        <property type="gene ID" value="SAMN05444003_2620"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="SSF56219"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="3" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endo/exonuclease/phosphatase" evidence="2">
        <location>
            <begin position="23"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="243"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH26289.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="328" mass="35319" checksum="65C78C6F03B0DD7B" modified="2017-03-15" version="1">MAVFHAPLSRDGPGLLLRDIEAREREVTAVVALIGVVQPDVIALTNFDYDADGLALSAFQRLLDENGVMLPFAYAPRPNSGRPSGIDIDQDERLGEPEDAVGYGRFWGDGGVAVLSRWAIDLEKSSVDTDTLWADVPNASLPDMTDAHLLGALPVSTSAHVQAWIDHPDDPFAILTSASTAPVFDGPEDRNGYRNAAELAHWREMIADIEVPFVLAFNANLDPIDGEGHHQKMLELLASPDLIDTEPRSTGGHENADSSHAGDPALDTVDWDGPSPGNLRVSYVLPSAGWSVLEAGVFWPGREDVDAALVEAVGPHRLVWAEISLKSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RWL5</accession>
    <name>A0A1M5RWL5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2731</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901990.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH30569">
        <property type="protein sequence ID" value="SHH30569"/>
        <property type="gene ID" value="SAMN05444003_2731"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012997058" evidence="2">
        <location>
            <begin position="23"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="154"/>
            <end position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH30569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="182" mass="19694" checksum="0843FC607B5A5447" modified="2017-03-15" version="1">MNFVRLLVLSFLMMIGATSATASTILYGTQLSFYHEFLGNQFFAEDFTVGPGVEISPGPANPAAARYYTIDIEDDRLTFEMGPYNFNPNFGFNGIVITDVLDNAPSFLSGSIVTNSFANSPGISVSENEIRIDFSAAGISNNQTVVFEFDIAPIPLPASAPMLAGAIGVGFLFVRRRQTKKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RXW5</accession>
    <name>A0A1M5RXW5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Ubiquinone biosynthesis protein COQ9</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2734</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30633.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901994.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2734"/>
    <dbReference type="EnsemblBacteria" id="SHH30633">
        <property type="protein sequence ID" value="SHH30633"/>
        <property type="gene ID" value="SAMN05444003_2734"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008289">
        <property type="term" value="F:lipid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006744">
        <property type="term" value="P:ubiquinone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013718">
        <property type="entry name" value="COQ9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012762">
        <property type="entry name" value="Ubiq_biosynth_COQ9"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21427">
        <property type="entry name" value="PTHR21427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08511">
        <property type="entry name" value="COQ9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02396">
        <property type="entry name" value="diverge_rpsU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0809">Transit peptide</keyword>
    <keyword evidence="4" id="KW-0830">Ubiquinone</keyword>
    <feature type="domain" description="COQ9" evidence="3">
        <location>
            <begin position="112"/>
            <end position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08511"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH30633.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="231" mass="25585" checksum="B3B20B47E1FD5898" modified="2017-03-15" version="1">MQLPVDPIKVQLLEAILPHVAFDGWSPSAFDAAVAEQGIDPVHAKTLCPRGAVDLAILFHQRGDDAMAEAMGTADLNDMRYSEKVAHAIWLRLQVVEDKEAVRRGSTLFSLPHMAPDGAKLIWGTADRIWLSLGDTSDDMNWYTKRATLSGVYGSVVLYWLGDTSEGAVATRDFIDRRIENVMQFEKFKAGINNSPTLKPITGTFARMASMIKAPNRMPNVDLPGMWRGDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RYR9</accession>
    <name>A0A1M5RYR9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2765</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902043.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2765"/>
    <dbReference type="EnsemblBacteria" id="SHH31375">
        <property type="protein sequence ID" value="SHH31375"/>
        <property type="gene ID" value="SAMN05444003_2765"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021848">
        <property type="entry name" value="DUF3445"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11927">
        <property type="entry name" value="DUF3445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH31375.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="247" mass="28091" checksum="8DA1FD16F21EDF95" modified="2017-03-15" version="1">MATKPVLQNQLDPNQRSVAARSLPGMQPLRGVDWITVDEAYSTQLAEKARLLATKEDAVLRCLPDAQEPAREVLSEVLQLLRDRTDFEVRYQHVICPDKTRIDLNFELPLQTLSKLIQEDICILQKIGDEHVLTAALLCFPASWTLAEKIGKPLIAIHRPVPEYDTNIAKRVQRLFDGVRVGQPMWRANFLNYSDPALHHPRTEAEPRTDDHMAGTYERSERQTVWRLPKTGAVVFSVHTTITKPNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RZJ7</accession>
    <name>A0A1M5RZJ7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 13">DNA polymerase I</fullName>
            <ecNumber evidence="3 13">2.7.7.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="primary">polA</name>
        <name evidence="17" type="ORF">SAMN05444003_2778</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="13">In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="12 13">
            <text>a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)</text>
            <dbReference type="Rhea" id="RHEA:22508"/>
            <dbReference type="Rhea" id="RHEA-COMP:17339"/>
            <dbReference type="Rhea" id="RHEA-COMP:17340"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:173112"/>
            <dbReference type="EC" id="2.7.7.7"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="2">Single-chain monomer with multiple functions.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 13">Belongs to the DNA polymerase type-A family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.7" evidence="3 13"/>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31630.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902064.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2778"/>
    <dbReference type="EnsemblBacteria" id="SHH31630">
        <property type="protein sequence ID" value="SHH31630"/>
        <property type="gene ID" value="SAMN05444003_2778"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008408">
        <property type="term" value="F:3'-5' exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006261">
        <property type="term" value="P:DNA-templated DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd09898">
        <property type="entry name" value="H3TH_53EXO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002562">
        <property type="entry name" value="3'-5'_exonuclease_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020046">
        <property type="entry name" value="5-3_exonucl_a-hlix_arch_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002421">
        <property type="entry name" value="5-3_exonuclease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036279">
        <property type="entry name" value="5-3_exonuclease_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019760">
        <property type="entry name" value="DNA-dir_DNA_pol_A_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001098">
        <property type="entry name" value="DNA-dir_DNA_pol_A_palm_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020045">
        <property type="entry name" value="DNA_polI_H3TH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018320">
        <property type="entry name" value="DNA_polymerase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002298">
        <property type="entry name" value="DNA_polymerase_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008918">
        <property type="entry name" value="HhH2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10133">
        <property type="entry name" value="PTHR10133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01367">
        <property type="entry name" value="5_3_exonuc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02739">
        <property type="entry name" value="5_3_exonuc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00476">
        <property type="entry name" value="DNA_pol_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01612">
        <property type="entry name" value="DNA_pol_A_exo1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00868">
        <property type="entry name" value="DNAPOLI"/>
    </dbReference>
    <dbReference type="SMART" id="SM00474">
        <property type="entry name" value="35EXOc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00475">
        <property type="entry name" value="53EXOc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00279">
        <property type="entry name" value="HhH2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00482">
        <property type="entry name" value="POLAc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47807">
        <property type="entry name" value="SSF47807"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="SSF56672"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="SSF88723"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00593">
        <property type="entry name" value="pola"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00447">
        <property type="entry name" value="DNA_POLYMERASE_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13" id="KW-0227">DNA damage</keyword>
    <keyword evidence="13" id="KW-0234">DNA repair</keyword>
    <keyword evidence="13" id="KW-0235">DNA replication</keyword>
    <keyword evidence="11 13" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="10 13" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="9" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0540">Nuclease</keyword>
    <keyword evidence="6 13" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 13" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="53EXOc" evidence="15">
        <location>
            <begin position="6"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="domain" description="3'-5' exonuclease" evidence="14">
        <location>
            <begin position="326"/>
            <end position="522"/>
        </location>
    </feature>
    <feature type="domain" description="POLAc" evidence="16">
        <location>
            <begin position="690"/>
            <end position="893"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011541"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00020311"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00024632"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU004460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="SMART" id="SM00474"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="SMART" id="SM00475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="SMART" id="SM00482"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="SHH31630.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="933" mass="102421" checksum="F6A7287AFD3B0D2B" modified="2017-03-15" version="1">MTTQFGKSCHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVSGFVNMLQRYVEGNTGPDAATHVAVIFDKGSHTFRNDLYDQYKANREAMPEDLRPQIPLTRDATRAFNIACEEIEGFEADDIIATLAHQARDAGGRVTILSSDKDLMQLVGGGVEMLDPMKNKRIDTDGVHEKFGVGPERVVDVQALAGDSVDNVPGAPGIGIKTAALLINEYGSLEELLDRAEEIKQPKRRQTLIDNRDQIELSKQLVQLDCDMELPFDLDSLEIKDADPETLMGFLAEMEFRTVTKRIADKLGIEAPVIADVAPTPIETSAAEAVPFDQATYSKVADAATLEDWIGRIRERGYVAVDTETTGLNEMTADLVGICLCVEAGDACYIPLTHKASASDDLFGSDELAQGQMGLDEALALLKPVLEDPSVLKIGQNMKYDAKIFARVGIDIAAMDDTMLMSYAMNAGLHNHGMDGLSERYLNHKPIEIKSLLGTGKSAITFDRVPIEDAVKYAAEDADITLRLWQLFKPQLHEKCVTTVYETLERPLVPVLAQMERTGVKVDRDTLSRMSNAFSQKMAGLEAELYELAGREFNVQSPAQVGTILFDEMALEGGKKTKTGQWSTPADVLEDLATEHDFPARILDYRQLAKLKSTYTDALQTHINVETGRVHTSYSIAGANTGRLASNDPNLQNIPVRTEEGRRIREAFVAEPGKTLVSLDYSQIELRILAHIAGIDTLKQAFKDGHDIHAMTASEMFDVPLDEMTPDIRRQAKAINFGVIYGISGFGLARNLRIPRAEAQGFIDRYFERFPGIRTYMDDTVAFAKEHGYVETLFGRKINTPEINAKGPHAGFAKRAAINAPIQGTAADVIRRAMIRMPAAIAGQPAKMLLQVHDELIFEVAEDGVDQLIETAREVMEGASDPAVRLDVKLAVDAGQGANWAEAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RZW2</accession>
    <name>A0A1M5RZW2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2784</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31759.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902072.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2784"/>
    <dbReference type="EnsemblBacteria" id="SHH31759">
        <property type="protein sequence ID" value="SHH31759"/>
        <property type="gene ID" value="SAMN05444003_2784"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006747">
        <property type="entry name" value="DUF599"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04654">
        <property type="entry name" value="DUF599"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="77"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="116"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="187"/>
            <end position="215"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH31759.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="232" mass="25911" checksum="B6E606D9589FE0A6" modified="2017-03-15" version="1">MEHFSALDQLPIIDFIAVAFVVGSWFLIGWRIEHPSPKRSSVTMLMAQFHRDWAKVFVDRDPRIFDSQVLGILRQGTAFFASTSILVLGGLLALMGNADPLRGVVEQVGLVEMSVLIWQLKFALVAFFVTNAFLKFVWAHRVFGYGTVMMAAVPNDPNAPDAIDRAMQAAELNIRAVINFNRGLRALYYALGSLGWILGTPALFLTTLIVIWVLWSREFASVPRSILINGKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S207</accession>
    <name>A0A1M5S207_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Xylose-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2814</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32489.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902114.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2814"/>
    <dbReference type="EnsemblBacteria" id="SHH32489">
        <property type="protein sequence ID" value="SHH32489"/>
        <property type="gene ID" value="SAMN05444003_2814"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048029">
        <property type="term" value="F:monosaccharide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015753">
        <property type="term" value="P:D-xylose transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025997">
        <property type="entry name" value="SBP_2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013456">
        <property type="entry name" value="XylF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13407">
        <property type="entry name" value="Peripla_BP_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02634">
        <property type="entry name" value="xylF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013019691" evidence="1">
        <location>
            <begin position="22"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="domain" description="Peripla_BP_4" evidence="2">
        <location>
            <begin position="28"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13407"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH32489.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="344" mass="35282" checksum="D8BEB7745F2344A8" modified="2017-03-15" version="1">MKKLMMATAIVSASFATPAFADGHGITVGVSWSNFQEERWKTDEAAIKAALDAAGASYVSADAQSSSAKQLADVESLIAQGVDALIILAQDSAAIGPAVDAASDEGIPVIGYDRLIEDSRAFYLTFDNVEVGRMQARAVLEAQPEGNYVMIKGSPTDPNADFLRGGQQEVLQAAIDSGAITIVGEAYTDGWVPANAQRNMEQILTSIDNDVDAVVASNDGTAGGVVAALTAQGLEGLPVSGQDGDHAALNRVALGTQTVSVWKDARELGKAAGEIAVALAGLDGAMADVDGSQSWTSPAGTEMTAVFLAPVPITADNLSVVVDAGWISQESLCQGVSNGPAPCN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S2S2</accession>
    <name>A0A1M5S2S2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_2832</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32942.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902142.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2832"/>
    <dbReference type="EnsemblBacteria" id="SHH32942">
        <property type="protein sequence ID" value="SHH32942"/>
        <property type="gene ID" value="SAMN05444003_2832"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="6"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="130"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="240"/>
            <end position="386"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH32942.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="400" mass="44495" checksum="54B867B633BA2614" modified="2017-03-15" version="1">MDFSVSPEQEALRLRTREFVRDEIQPLEDDRGNYDAHENIRLDVLESLRAKAKAAGLWAPQAPKSLGGMGLGVQDWAIMYEEANYSIFGPAVFNCAAPDDGNINVLSKIGTPEQQEKWLQPLIDGQVRSAIAMTEPAPGSGSDPAGMMLTKAEKKGDVWVVNGRKWFITGAGEAKHFILVARTSDDPRKGLSAFLYYADQPGQRIERRIPIMGPEEHGGHCEIVYEGLEIPEENLLMNVGDGLKVTQIRLGPARLTHCMRWLGLAKRSMAIAADYTANRIGFGVRLADRESVQIKMGELAHDIQIGKLLVMHAAWKLDQGDFARKEISSAKVHVANTLHKAVDTAIQLNGARGYSKDTILEWIYRYARQARLVDGADEVHKMILSQTYQNSGIEFWDWGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S3S4</accession>
    <name>A0A1M5S3S4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized conserved protein, contains von Willebrand factor type A (VWA) domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2844</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33237.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902162.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2844"/>
    <dbReference type="EnsemblBacteria" id="SHH33237">
        <property type="protein sequence ID" value="SHH33237"/>
        <property type="gene ID" value="SAMN05444003_2844"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011195">
        <property type="entry name" value="UCP010256"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008912">
        <property type="entry name" value="Uncharacterised_CoxE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05762">
        <property type="entry name" value="VWA_CoxE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF010256">
        <property type="entry name" value="CoxE_vWa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="222"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="99"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH33237.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="393" mass="43129" checksum="CF06B497D0E5A30A" modified="2017-03-15" version="1">MSRVTRFSSRDSGASARMVGFMAHLRENGLRLGVAEADISLNALTHVNAARPDDCRSVLRAICTGCKEEAERFDDLFDSYWMDSGRVKQRVIAKSLPRLNDDVHSSKDGTGEDSGASGSATAPDEGEGEADSDGTGKLIATQKQNLKRRDLRDIVRAEEIAEAEAVARLIGTSLRDRRSRRRIAARKGDRLHFRKTIRRSLSTGGEPLTLLKRKRPDRTRKIVALCDVSGSMSIYAQVFLAFLAGLMRAEKDADAYLFHTRLVRITEALRDKDAMRAIGRLSLMADGFGGGSKIGPSLQRFADTYAKRFVDGRSVVLIFSDGYDTEPPEHIAAALAQLKKRNCKIIWLNPLKGWRDYEPVAGGMAAALPHLDLFAPANTLADLAALETELGAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S4H2</accession>
    <name>A0A1M5S4H2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ferredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2828</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32853.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902135.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2828"/>
    <dbReference type="EnsemblBacteria" id="SHH32853">
        <property type="protein sequence ID" value="SHH32853"/>
        <property type="gene ID" value="SAMN05444003_2828"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="1">
        <location>
            <begin position="4"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH32853.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="121" mass="13353" checksum="669245A24B70B881" modified="2017-03-15" version="1">MTTFTVTIANRADATYEVEARRPLLDTLREQGVDLPYGCKYGGCITCAAKLTEGSVDQRRQVALNNRQIDKGYVVLCVARATSDITLEIGVESHDALYRNPFLDPLKPHELKADIATPKEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S5Z4</accession>
    <name>A0A1M5S5Z4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">TRAP-type C4-dicarboxylate transport system, substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2877</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial solute-binding protein 7 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH34037.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902212.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2877"/>
    <dbReference type="EnsemblBacteria" id="SHH34037">
        <property type="protein sequence ID" value="SHH34037"/>
        <property type="gene ID" value="SAMN05444003_2877"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071702">
        <property type="term" value="P:organic substance transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018389">
        <property type="entry name" value="DctP_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038404">
        <property type="entry name" value="TRAP_DctP_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33376">
        <property type="entry name" value="PTHR33376"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03480">
        <property type="entry name" value="DctP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0574">Periplasm</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH34037.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="382" mass="41378" checksum="76F37BC7B16FCA69" modified="2017-03-15" version="1">MDKQDRMELESTERRNFLKVASTAGFTAALVAGASGALWSTEAAAQSANEERERESAAEHIMTIATAYVLGASRSYPIMQLDLKENIQNATNGKVYVKLAPGGQLGAGGALVQAVQGGTIQAAQHSLSNFAPFASTVDLINMPYLCGSNQRFTNLVTSDFWTSNVTPKIEENGFKPLFYVNIDPRVVAVRKGGDAVITPADMEGIKFRVPGSAMLQQYYRLVGANPTPVAWGETPSAIQQGVADALDPSVGALFVFGFKDILSHVTFTQAVPDSQVYSCNLEWFNSMPADVQEGIMWGSEMTAHQNLAKVPSARAYAMAELVKAGVEFHSLSDDQLAEWQDAGGYQRSEWDEFKVELAGSMDNFEQMVEAAGTQGKYYVHDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SDP1</accession>
    <name>A0A1M5SDP1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2912</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36581.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902306.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH36581">
        <property type="protein sequence ID" value="SHH36581"/>
        <property type="gene ID" value="SAMN05444003_2912"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027266">
        <property type="entry name" value="TrmE/GcvT_dom1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH36581.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="170" mass="19161" checksum="9898CB53320A521A" modified="2017-03-15" version="1">MRDDSHKWDRLTKDDVIELPNGARLSHVKNLTLTMISGPNVLKQIDAPQVGWPDVIDTDRYAVVMRRDRVLLVGDTDLTEGWDDTKSLAISDMTHGYDVFDLSGPHALSMLQQGTEIHLDEPSRSAVRLAFGLGLHIYRYGAEDTFRVHVLTHQREALIGYLKAVLNSQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SEB3</accession>
    <name>A0A1M5SEB3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 25">Na(+)-translocating NADH-quinone reductase subunit F</fullName>
            <shortName evidence="25">Na(+)-NQR subunit F</shortName>
            <shortName evidence="25">Na(+)-translocating NQR subunit F</shortName>
            <ecNumber evidence="6 25">7.2.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="24 25">NQR complex subunit F</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="23 25">NQR-1 subunit F</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="25" type="primary">nqrF</name>
        <name evidence="28" type="ORF">SAMN05444003_2920</name>
    </gene>
    <organism evidence="28 29">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="28 29" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="28 29">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 25">NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. The first step is catalyzed by NqrF, which accepts electrons from NADH and reduces ubiquinone-1 to ubisemiquinone by a one-electron transfer pathway.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 25">
            <text>a ubiquinone + H(+) + n Na(+)(in) + NADH = a ubiquinol + n Na(+)(out) + NAD(+)</text>
            <dbReference type="Rhea" id="RHEA:47748"/>
            <dbReference type="Rhea" id="RHEA-COMP:9565"/>
            <dbReference type="Rhea" id="RHEA-COMP:9566"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16389"/>
            <dbReference type="ChEBI" id="CHEBI:17976"/>
            <dbReference type="ChEBI" id="CHEBI:29101"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="7.2.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="25">
            <name>2Fe-2S cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49601"/>
        </cofactor>
        <text evidence="25">Binds 1 [2Fe-2S] cluster.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 25">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="5 25">Composed of six subunits; NqrA, NqrB, NqrC, NqrD, NqrE and NqrF.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="25">Cell membrane</location>
            <topology evidence="25">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 25">Belongs to the NqrF family.</text>
    </comment>
    <dbReference type="EC" id="7.2.1.1" evidence="6 25"/>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36770.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902317.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2920"/>
    <dbReference type="EnsemblBacteria" id="SHH36770">
        <property type="protein sequence ID" value="SHH36770"/>
        <property type="gene ID" value="SAMN05444003_2920"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016655">
        <property type="term" value="F:oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006814">
        <property type="term" value="P:sodium ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00430">
        <property type="entry name" value="NqrF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008333">
        <property type="entry name" value="Cbr1-like_FAD-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017927">
        <property type="entry name" value="FAD-bd_FR_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039261">
        <property type="entry name" value="FNR_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010205">
        <property type="entry name" value="NqrF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001433">
        <property type="entry name" value="OxRdtase_FAD/NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00970">
        <property type="entry name" value="FAD_binding_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00175">
        <property type="entry name" value="NAD_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000044">
        <property type="entry name" value="Cis_Diol_DH_RD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52343">
        <property type="entry name" value="SSF52343"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="SSF63380"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01941">
        <property type="entry name" value="nqrF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51384">
        <property type="entry name" value="FAD_FR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11 25" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="9" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="8 25" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="13 25" id="KW-0274">FAD</keyword>
    <keyword evidence="10 25" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="19 25" id="KW-0406">Ion transport</keyword>
    <keyword evidence="15 25" id="KW-0408">Iron</keyword>
    <keyword evidence="16 25" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="21 25" id="KW-0472">Membrane</keyword>
    <keyword evidence="12 25" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="17 25" id="KW-0520">NAD</keyword>
    <keyword evidence="29" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="18 25" id="KW-0915">Sodium</keyword>
    <keyword evidence="22 25" id="KW-0739">Sodium transport</keyword>
    <keyword evidence="14 25" id="KW-1278">Translocase</keyword>
    <keyword evidence="25" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="25" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="25" id="KW-0813">Transport</keyword>
    <keyword evidence="20 25 28" id="KW-0830">Ubiquinone</keyword>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="26">
        <location>
            <begin position="33"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="domain" description="FAD-binding FR-type" evidence="27">
        <location>
            <begin position="128"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="binding site" evidence="25">
        <location>
            <position position="68"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="25">
        <location>
            <position position="74"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="25">
        <location>
            <position position="77"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="25">
        <location>
            <position position="109"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00002972"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005570"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011309"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00013099"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00019729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="ARBA" id="ARBA00023053"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="20">
        <source>
            <dbReference type="ARBA" id="ARBA00023075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="21">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="22">
        <source>
            <dbReference type="ARBA" id="ARBA00023201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="23">
        <source>
            <dbReference type="ARBA" id="ARBA00030032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="24">
        <source>
            <dbReference type="ARBA" id="ARBA00030787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="25">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00430"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="26">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="27">
        <source>
            <dbReference type="PROSITE" id="PS51384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="28">
        <source>
            <dbReference type="EMBL" id="SHH36770.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="29">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="407" mass="45225" checksum="90B5374B213ACDDA" modified="2017-03-15" version="1">METFGLGIILFTLIVLALVTIILAARSRLVSSGNVNITINGEKTISVPAGGKLLQTLAEQKLFVPSACGGGGTCAQCRVKIHSGGGSILPTEEGHITKRDAAGGDRLSCQVAVKQDMEVEVPEEVFGVKKWECTVRSNENVATFIKNLVLELPEGEDVNFRAGGYIQIEAPAHSLKYTDFDVQEEYREDWDRFNLWQYDSTVPEPIERAYSMANYPDEKGLIMLNVRVASPPPGSTGIPAGQMSSYIFNLKPGDKVTISGPFGEFFARDTQKEMVFIGGGAGMAPMRSHIFDQLKRLKNRDRKITFWYGARSKKEMFFVEDFDELAAEFPNFTWHVALSDAMPEDDWDGYTGFIHNVLHDEYLKDHPAPEDCEFYMCGPPIMNSSCINMLVELGVDREDIMLDDFGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SGL9</accession>
    <name>A0A1M5SGL9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2955</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37570.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902373.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2955"/>
    <dbReference type="EnsemblBacteria" id="SHH37570">
        <property type="protein sequence ID" value="SHH37570"/>
        <property type="gene ID" value="SAMN05444003_2955"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012770678" evidence="1">
        <location>
            <begin position="18"/>
            <end position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH37570.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="176" mass="18857" checksum="5702F3B5202415F9" modified="2017-03-15" version="1">MRLILATLALLPTTALAASSSSSDAPKPTETTEVCEEGLVWDLATETCLPPEQSTNEDSAMMDAVRELAHDGRYADALRVLDGLDDATTDLALTYYGFAHRKSGNTALGMAYYGAALDQNSDNILARSYMGQAHVEAGQLQLASAQLSEIRKRGGRGTWAEFSLRQAIGSGVTYSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SHV8</accession>
    <name>A0A1M5SHV8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2981</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38134.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH38134">
        <property type="protein sequence ID" value="SHH38134"/>
        <property type="gene ID" value="SAMN05444003_2981"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH38134.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="64" mass="7269" checksum="A6A86428F0316312" modified="2017-03-15" version="1">MTKDFIKTAQTRRLDALEEMDHREANGQDVRKLRRLPPLTQSHIDALFQTSKRASNTATGFLAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SLS8</accession>
    <name>A0A1M5SLS8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Protein-tyrosine-phosphatase</fullName>
            <ecNumber evidence="2">3.1.3.48</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_3037</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H2O + O-phospho-L-tyrosyl-[protein] = L-tyrosyl-[protein] + phosphate</text>
            <dbReference type="Rhea" id="RHEA:10684"/>
            <dbReference type="Rhea" id="RHEA-COMP:10136"/>
            <dbReference type="Rhea" id="RHEA-COMP:10137"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:46858"/>
            <dbReference type="ChEBI" id="CHEBI:82620"/>
            <dbReference type="EC" id="3.1.3.48"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="3.1.3.48" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH39360.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902486.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3037"/>
    <dbReference type="EnsemblBacteria" id="SHH39360">
        <property type="protein sequence ID" value="SHH39360"/>
        <property type="gene ID" value="SAMN05444003_3037"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004725">
        <property type="term" value="F:protein tyrosine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023485">
        <property type="entry name" value="Ptyr_pPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036196">
        <property type="entry name" value="Ptyr_pPase_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01451">
        <property type="entry name" value="LMWPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00226">
        <property type="entry name" value="LMWPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52788">
        <property type="entry name" value="SSF52788"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0904">Protein phosphatase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LMWPc" evidence="4">
        <location>
            <begin position="11"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013064"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022912"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH39360.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="160" mass="18164" checksum="1E3FB9E7EA266D89" modified="2017-03-15" version="1">MAADTYEDLPQSVLFCCDHNAVRSPMAEGIMKQLYGTDCYIQSVGVKNDLEIDGFSIAVCEELGVELSRHRSRSFDEMEEWGDDLSSFDLVLALSPASQRRALDLTRFFHLDVEYWPILDPTGLGDNRETRLVSYREARDQIVNRLTSRWGPGHGFTPQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SSA5</accession>
    <name>A0A1M5SSA5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Two component transcriptional regulator, LuxR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_3076</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41385.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3076"/>
    <dbReference type="EnsemblBacteria" id="SHH41385">
        <property type="protein sequence ID" value="SHH41385"/>
        <property type="gene ID" value="SAMN05444003_3076"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="7"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="142"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH41385.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="209" mass="22653" checksum="7E6497CB0BE797B2" modified="2017-03-15" version="1">MEGPRLKILIADDHELVRDTLAAFLEKENDIEVTSVEDLTAAIKTIKGGIRFDLVLLDYSMPGMNGLDGLEQAIEESIGRPVAVMSGTAPKAIAQEALDKGAIGFLPKTMGAKSLVNAVRFMVAGETFVPVKFMTEEVVEDINPLAKGLSARELDVLNGLCRGLANKEIARELELQEVTIKLHVKTLSRKLDAKNRTHAAMIAKDAGLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SSA6</accession>
    <name>A0A1M5SSA6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 7">UDP-glucose 6-dehydrogenase</fullName>
            <ecNumber evidence="4 7">1.1.1.22</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">SAMN05444003_3078</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>H2O + 2 NAD(+) + UDP-alpha-D-glucose = 3 H(+) + 2 NADH + UDP-alpha-D-glucuronate</text>
            <dbReference type="Rhea" id="RHEA:23596"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:58052"/>
            <dbReference type="ChEBI" id="CHEBI:58885"/>
            <dbReference type="EC" id="1.1.1.22"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Nucleotide-sugar biosynthesis; UDP-alpha-D-glucuronate biosynthesis; UDP-alpha-D-glucuronate from UDP-alpha-D-glucose: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.22" evidence="4 7"/>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41421.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3078"/>
    <dbReference type="EnsemblBacteria" id="SHH41421">
        <property type="protein sequence ID" value="SHH41421"/>
        <property type="gene ID" value="SAMN05444003_3078"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00038">
        <property type="reaction ID" value="UER00491"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003979">
        <property type="term" value="F:UDP-glucose 6-dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000271">
        <property type="term" value="P:polysaccharide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006065">
        <property type="term" value="P:UDP-glucuronate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017476">
        <property type="entry name" value="UDP-Glc/GDP-Man"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014027">
        <property type="entry name" value="UDP-Glc/GDP-Man_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036220">
        <property type="entry name" value="UDP-Glc/GDP-Man_DH_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014026">
        <property type="entry name" value="UDP-Glc/GDP-Man_DH_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001732">
        <property type="entry name" value="UDP-Glc/GDP-Man_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028357">
        <property type="entry name" value="UDPglc_DH_bac"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00984">
        <property type="entry name" value="UDPG_MGDP_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03720">
        <property type="entry name" value="UDPG_MGDP_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03721">
        <property type="entry name" value="UDPG_MGDP_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF500134">
        <property type="entry name" value="UDPglc_DH_bac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000124">
        <property type="entry name" value="UDPglc_GDPman_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00984">
        <property type="entry name" value="UDPG_MGDP_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52413">
        <property type="entry name" value="SSF52413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03026">
        <property type="entry name" value="NDP-sugDHase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7 10" id="KW-0520">NAD</keyword>
    <keyword evidence="5 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UDPG_MGDP_dh_C" evidence="11">
        <location>
            <begin position="340"/>
            <end position="453"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="9">
        <location>
            <begin position="181"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="9">
        <location>
            <begin position="280"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="8">
        <location>
            <position position="291"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="53"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="58"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="109"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="184"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="233"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="288"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="294"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="347"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="354"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000874"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006601"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRNR" id="PIRNR000124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR500134-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR500134-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR500134-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHH41421.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="466" mass="50134" checksum="F429734126B7DF5C" modified="2017-03-15" version="1">MMDMQLINASQAVPVQLDKVTEKPCISVVGLGYVGAVSTACLSSLGHPVIGVDVDISKVEQIASGISPIHEKDLDRLLLEGIERNLIHTTTDVSQAVVDSDVTFVSVGTPTSEDGGCDFSYIDTAARSIGLGLSRKGGFHTVVMRCSIPPGTTLEMMAPVIEEVSGKTVGVDFGICFNPEFLREGVAVADFHAPPKTVIGVTDSRSERIMRKIYSAVDKNVIVTSVETAEMVKYIDNVWHATKVTFANEVGRLCKPLGVDSHDVMDIFVQDTKLNLSSYYLKPGFAFGGSCLPKEVRAVAHIAEGIGVNLPLIKSLSTSNSAHIDAAIQMAKDTGARRIGVFGIAFKPGTDDLRESPILEVMAALEEEGIEIFVHDSAITKKTSLSGQLSYMRHGSPGLRALASRLSDMLYDDAVDVMEKSDAVIVTHAHETYRKILKNDEQKPVLDLVRLNSSKTAGPNYAGIGW</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SU79</accession>
    <name>A0A1M5SU79_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3113</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42027.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH42027">
        <property type="protein sequence ID" value="SHH42027"/>
        <property type="gene ID" value="SAMN05444003_3113"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH42027.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="63" mass="7115" checksum="C47B89A2612A158A" modified="2017-03-15" version="1">MKNPHLACETGAFRVTLSATVASKDNVTLGRPQATPSDQRYRWCPRSNSVQRMNIREGRIIDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-09-29" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SUN5</accession>
    <name>A0A1M5SUN5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3124</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42197.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902680.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH42197">
        <property type="protein sequence ID" value="SHH42197"/>
        <property type="gene ID" value="SAMN05444003_3124"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010297">
        <property type="entry name" value="DUF900_hydrolase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05990">
        <property type="entry name" value="DUF900"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH42197.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="306" mass="33977" checksum="7D432BEBD46237FD" modified="2017-03-15" version="1">MEYFASRRNVSGPGPVFGNKVGSRPVFVSATVSSAGQVVPSELSSHAWADRVLSTSSNGHVVILVHGFNISQNDLGSRLTAIRQTLQHAGYKGAVVAFDWPSDGSYFKYRDDWVDARACAGFLIADTVELLLRHRPTAKIHFIAHSMGSYVTTRAFALATGTAQEPKLANSVGQVIFTGSDADRAWFDDDAWGDASVRRCADRLTNYWSEHDQALKVSEDVYHRDTFRFGRHQTLHSGADRVVSVSCGDYYTAKYAQVVDPSFTHRWYYRDSTFYRDLLTTLRHPNSTNYATRVSAADGFQALKNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SWZ6</accession>
    <name>A0A1M5SWZ6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">50S ribosomal protein L5</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rplE</name>
        <name evidence="9" type="ORF">SAMN05444003_3172</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA and the P site tRNA. Forms a bridge to the 30S subunit in the 70S ribosome.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the universal ribosomal protein uL5 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH43101.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902759.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3172"/>
    <dbReference type="EnsemblBacteria" id="SHH43101">
        <property type="protein sequence ID" value="SHH43101"/>
        <property type="gene ID" value="SAMN05444003_3172"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01333_B">
        <property type="entry name" value="Ribosomal_L5_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002132">
        <property type="entry name" value="Ribosomal_L5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020930">
        <property type="entry name" value="Ribosomal_L5_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031309">
        <property type="entry name" value="Ribosomal_L5_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022803">
        <property type="entry name" value="Ribosomal_L5_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031310">
        <property type="entry name" value="Ribosomal_L5_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11994">
        <property type="entry name" value="PTHR11994"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00281">
        <property type="entry name" value="Ribosomal_L5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00673">
        <property type="entry name" value="Ribosomal_L5_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002161">
        <property type="entry name" value="Ribosomal_L5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55282">
        <property type="entry name" value="SSF55282"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 5 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="5" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="Ribosomal_L5" evidence="7">
        <location>
            <begin position="31"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="domain" description="Ribosomal_L5_C" evidence="8">
        <location>
            <begin position="92"/>
            <end position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00029522"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01333"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003930"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00673"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH43101.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="187" mass="20807" checksum="B2050BEF101AFBA6" modified="2017-03-15" version="1">MLDSANYTPRLKAEYAEKIRAAMKEEFGYKNDMQIPKLEKIVLNIGCGAEAVKDSKKAKSAVEDLTAIAGQKALTTRASKSIAGFRVREGMPLGAKVTLRGDRMYEFLERLITIAMPRIRDFRGVSGKSFDGRGNYAMGIKEHLVFPEIDFDKIDENWGMDIVICTTAPTDAEAKSLLKAFNMPFNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T7D3</accession>
    <name>A0A1M5T7D3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD/two-component system, response regulator AauR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_3278</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46665.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902960.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3278"/>
    <dbReference type="EnsemblBacteria" id="SHH46665">
        <property type="protein sequence ID" value="SHH46665"/>
        <property type="gene ID" value="SAMN05444003_3278"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002197">
        <property type="entry name" value="HTH_Fis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002078">
        <property type="entry name" value="Sigma_54_int"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025662">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02954">
        <property type="entry name" value="HTH_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14532">
        <property type="entry name" value="Sigma54_activ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01590">
        <property type="entry name" value="HTHFIS"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00675">
        <property type="entry name" value="SIGMA54_INTERACT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50045">
        <property type="entry name" value="SIGMA54_INTERACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="4" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="3" id="KW-0902">Two-component regulatory system</keyword>
    <feature type="domain" description="Response regulatory" evidence="8">
        <location>
            <begin position="5"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma-54 factor interaction" evidence="7">
        <location>
            <begin position="143"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="6">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH46665.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="430" mass="46547" checksum="AF4B45E8D9C85301" modified="2017-03-15" version="1">MSKPHVMIVEDDHEIRSSLVDLLDAAGWTASAFPRAEDALKQLDDLQPAVVLSDIQMPGMGGLALLDTIPGDGPPIVLISAHGDIPMAVDAMSRGAYSFVEKPFEPRRLLTILSHAADQYQMKAANERLKDRLVSVAGLNRILLGQSAAMQGLRDTIMDFSDTGLPVLIKGETGTGKELVARALHNLGPRAEQNFLALNASLLTAETLAKSVHPADGGTLFLDEVGACPVDVQAMFLRLIEHKELPAEDGSILSLDIRILSATNENVDEAVAAGTLRSDLLFRLNPFTISIPPLRERKDDILLLATHFLDTAAQTYEIATPEITAQDVKALLAHDWPGNVRELRSVADRRTHAARRGLGSFAEAISPLVDQDDVPDTLREAVASFERELIGKAIQSHQGRMDAVAEALGIGRRTLNEKIVKLGLNKDAFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T7X8</accession>
    <name>A0A1M5T7X8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Urease accessory protein UreD</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">ureD</name>
        <name evidence="4" type="ORF">SAMN05444003_3270</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">UreD, UreF and UreG form a complex that acts as a GTP-hydrolysis-dependent molecular chaperone, activating the urease apoprotein by helping to assemble the nickel containing metallocenter of UreC. The UreE protein probably delivers the nickel.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the UreD family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3270"/>
    <dbReference type="EnsemblBacteria" id="SHH46463">
        <property type="protein sequence ID" value="SHH46463"/>
        <property type="gene ID" value="SAMN05444003_3270"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016151">
        <property type="term" value="F:nickel cation binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01384">
        <property type="entry name" value="UreD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002669">
        <property type="entry name" value="UreD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33643">
        <property type="entry name" value="PTHR33643"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01774">
        <property type="entry name" value="UreD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0143">Chaperone</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-0996">Nickel insertion</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007177"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH46463.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="288" mass="31945" checksum="1E0E61249A3BFAC4" modified="2017-03-15" version="1">MVNRNLSAKMLTRGATKRRNVELEQIIPRSEGRGALSSKLYKGRSVIDDFRCSGALRVLFPRTDQDLSAILINTSGGLTSGDIFEFEATAQKGSNLTLSTQAAERGYRALTGSAVTQTTLSVEDGARLNWLPQELILFDGCDIERSLTANMQGDAQFLFVEPMVFGRTAMKETVNRGRFLDQVTIYRDQILLYFDRVRLEDDLKNTLSQRAIAQGCLAMVNLIYIGPDAEAHLDTVRSHLPITGGATMIEDDVMVGRVLASDGFELRQALLPILDLLSQNTLPKTWRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L095</accession>
    <name>A0A1M5L095_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 7">Cobyric acid synthase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">cobQ</name>
        <name evidence="10" type="ORF">SAMN05444003_0014</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 7">Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 7">Cofactor biosynthesis; adenosylcobalamin biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the CobB/CobQ family. CobQ subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58189.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900316.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0014"/>
    <dbReference type="EnsemblBacteria" id="SHG58189">
        <property type="protein sequence ID" value="SHG58189"/>
        <property type="gene ID" value="SAMN05444003_0014"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00148"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015420">
        <property type="term" value="F:ABC-type vitamin B12 transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01750">
        <property type="entry name" value="GATase1_CobQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00028">
        <property type="entry name" value="CobQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002586">
        <property type="entry name" value="CobQ/CobB/MinD/ParA_Nub-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033949">
        <property type="entry name" value="CobQ_GATase1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004459">
        <property type="entry name" value="CobQ_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011698">
        <property type="entry name" value="GATase_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21343:SF1">
        <property type="entry name" value="PTHR21343:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01656">
        <property type="entry name" value="CbiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07685">
        <property type="entry name" value="GATase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00313">
        <property type="entry name" value="cobQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="5 7" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CbiA" evidence="8">
        <location>
            <begin position="5"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="domain" description="GATase_3" evidence="9">
        <location>
            <begin position="250"/>
            <end position="434"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="7">
        <location>
            <position position="330"/>
        </location>
    </feature>
    <feature type="active site" evidence="7">
        <location>
            <position position="427"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00019833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00025166"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF07685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG58189.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="485" mass="51804" checksum="7D0A7D22E951B860" modified="2017-03-15" version="1">MTKAIMIQGAGSNVGKSMLVAGIARACVRRGLSVAPFKPQNMSNNAAVTVDGGEIGRAQALQAMAAGRDPIVDMNPVLLKPETDVGAQIIVQGKRFGTMKAREYGKQKGTLLPKVLESFHRLIEGVDLILIEGAGSPAEVNLRAGDIANMGFAEAADIPVALIGDIDRGGVIAQLVGTHVILPPSDRDRIKAFAVNKFRGDTTLFSDGMDIIEEQTGWSSLGIIPWFADAWKLPAEDIMDVKGHAGGDIKVAVPRLNRIANFDDLDPLSAMPEVTVDLIEAGRPLPGDADLVLIPGSKSTIADLAHFKAQGWDIDLYAHVRRGGAVLGVCGGYQMLGKEIWDDDGIEGAPARIEGLGLLDVITEMKPEKRLALTQATYLPTGDAVEGYEIHIGKTHGPDRDNAWLSVNGQSEGASARNGQIKGCYLHGLFAADAFRSSYFKDLGFNVAQQDYREDVEQTLDALADHLEAHFDIDALLRAAGEVSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L6E6</accession>
    <name>A0A1M5L6E6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Protein HflK</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_0102</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">HflC and HflK could encode or regulate a protease.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">HflC and HflK may interact to form a multimeric complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the band 7/mec-2 family. HflK subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60003.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898457.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0102"/>
    <dbReference type="EnsemblBacteria" id="SHG60003">
        <property type="protein sequence ID" value="SHG60003"/>
        <property type="gene ID" value="SAMN05444003_0102"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd03404">
        <property type="entry name" value="SPFH_HflK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.479.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001107">
        <property type="entry name" value="Band_7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036013">
        <property type="entry name" value="Band_7/SPFH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010201">
        <property type="entry name" value="HflK"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43327:SF2">
        <property type="entry name" value="PTHR43327:SF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01145">
        <property type="entry name" value="Band_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00244">
        <property type="entry name" value="PHB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117892">
        <property type="entry name" value="SSF117892"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01933">
        <property type="entry name" value="hflK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="PHB" evidence="8">
        <location>
            <begin position="98"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="265"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="24"/>
            <end position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU364113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG60003.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="382" mass="40501" checksum="D93B8EEBBCAC15F1" modified="2017-03-15" version="1">MAGNNGGPWGGGGNNGSGNNGSGDDRNRPDRRPGQDGPQIPEIDDLVNKGREQLRVLMGGGGGSNNASGGSGGGGGPAITRGTVGLGILALVALWLFASFYTVRPEEKSVELLLGSESAIGEPGLNFAPWPIVTREVLAVTTERNIEVGTGRAGGDAGLMLTGDENIVDVDFQVVWNISNPSEYLFNLADPAQTIEAVSESAMREIIAQSNLAPILNRDRGAIADRLRDQIQTTLDSYNSGVNIVRVNFDKADPPEPVIASFRQVQDAEQERDRLQNVADAYANQRVAGARGEAAQLLEQAEAYRAQVVNEAVGEASRFSAVLSEYEKAPEVTRKRLYLETMEQVLGGVDIILLDETGEGSNGVVPYLPLNELRSNSNGGSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L8N1</accession>
    <name>A0A1M5L8N1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Iron-sulfur cluster carrier protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_0162</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the Mrp/NBP35 ATP-binding proteins family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">In the C-terminal section; belongs to the Mrp/NBP35 ATP-binding proteins family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">In the N-terminal section; belongs to the MIP18 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61320.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900338.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0162"/>
    <dbReference type="EnsemblBacteria" id="SHG61320">
        <property type="protein sequence ID" value="SHG61320"/>
        <property type="gene ID" value="SAMN05444003_0162"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140663">
        <property type="term" value="F:ATP-dependent FeS chaperone activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016226">
        <property type="term" value="P:iron-sulfur cluster assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02040">
        <property type="entry name" value="Mrp_NBP35"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034904">
        <property type="entry name" value="FSCA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002744">
        <property type="entry name" value="MIP18-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019591">
        <property type="entry name" value="Mrp/NBP35_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000808">
        <property type="entry name" value="Mrp_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044304">
        <property type="entry name" value="NUBPL-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033756">
        <property type="entry name" value="YlxH/NBP35"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42961">
        <property type="entry name" value="PTHR42961"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01883">
        <property type="entry name" value="FeS_assembly_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10609">
        <property type="entry name" value="ParA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117916">
        <property type="entry name" value="SSF117916"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01215">
        <property type="entry name" value="MRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FeS_assembly_P" evidence="7">
        <location>
            <begin position="5"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="81"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="120"/>
            <end position="127"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG61320.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="357" mass="36615" checksum="C0BD8EBBE27FC8ED" modified="2017-03-15" version="1">MALSRDAVLAVLSKITLPNGKSLVEVDYVRALSIEGGTVKFVIEAPDAAVAAQLSAVRDAAEAAVKAIDGVETVSVVLTAHGGAPKPAEPPSLKVGRHPTPQAGPAPVAGVDRILAIGSGKGGVGKSTVSSNLAVALAKQGRRVGLLDADIYGPSQPRMMGVSKRPGSPDGKTIIPLQAHGVTMMSIGLMVDPDKAVVWRGPMLMGALQQMLGQVEWGKLDVLIVDLPPGTGDVQLTLCQKTQLTGAVVVSTPQDVALLDARKALDMFSSLRTPVLGLIENMSTFHCPKCGHESQIFGHGGVAAEAEKIGVPFLGALPIDLDTRLAGDGGTPIAAGEGPMADAYAQLAKRFIDGGMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L8T0</accession>
    <name>A0A1M5L8T0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Ribosomal RNA small subunit methyltransferase H</fullName>
            <ecNumber evidence="6">2.1.1.199</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">16S rRNA m(4)C1402 methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">rRNA (cytosine-N(4)-)-methyltransferase RsmH</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rsmH</name>
        <name evidence="8" type="ORF">SAMN05444003_0165</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>cytidine(1402) in 16S rRNA + S-adenosyl-L-methionine = H(+) + N(4)-methylcytidine(1402) in 16S rRNA + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42928"/>
            <dbReference type="Rhea" id="RHEA-COMP:10286"/>
            <dbReference type="Rhea" id="RHEA-COMP:10287"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74506"/>
            <dbReference type="ChEBI" id="CHEBI:82748"/>
            <dbReference type="EC" id="2.1.1.199"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the methyltransferase superfamily. RsmH family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.199" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61386.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898529.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0165"/>
    <dbReference type="EnsemblBacteria" id="SHG61386">
        <property type="protein sequence ID" value="SHG61386"/>
        <property type="gene ID" value="SAMN05444003_0165"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071424">
        <property type="term" value="F:rRNA (cytosine-N4-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070475">
        <property type="term" value="P:rRNA base methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01007">
        <property type="entry name" value="16SrRNA_methyltr_H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002903">
        <property type="entry name" value="RsmH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023397">
        <property type="entry name" value="SAM-dep_MeTrfase_MraW_recog"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11265">
        <property type="entry name" value="PTHR11265"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01795">
        <property type="entry name" value="Methyltransf_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004486">
        <property type="entry name" value="MraW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81799">
        <property type="entry name" value="SSF81799"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00006">
        <property type="entry name" value="TIGR00006"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 6 8" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="5 6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="4 6 8" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="6">
        <location>
            <begin position="39"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="289"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="57"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="84"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="100"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="107"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010396"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG61386.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="326" mass="35440" checksum="887FE997C5AEDC00" modified="2017-03-15" version="1">MSAAPDTSSAAHIPVLIGPLIKAVQPVSGTWLDGTFGNGGYTRELLAAGADKVIGVDRDPMVFEMAKDWIADYGDQIELVEGTFSKLDEYASDLDGIVLDLGVSSMQLDIAERGFSFMRDGPLDMRMSQSGPSAADLVNDSDEGELADIIYLYGEERASRRIAKSIVANRPITTTLELAKIVEGCLPRAKLNQSHSATRTFQALRIAVNNEYGELFEAMMAAERALKPGGQLAIVTFHSVEDRMVKRFFLKRSGSMANANRYAPETQHDEAAWTLANRKAISADDTELQMNPRSRSAKLRVARRTSAAAGTVAPKDIGMPVQKKGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LBF4</accession>
    <name>A0A1M5LBF4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0202</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62300.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900341.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0202"/>
    <dbReference type="EnsemblBacteria" id="SHG62300">
        <property type="protein sequence ID" value="SHG62300"/>
        <property type="gene ID" value="SAMN05444003_0202"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.50.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017136">
        <property type="entry name" value="UCP037205"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013088">
        <property type="entry name" value="Znf_NHR/GATA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37463">
        <property type="entry name" value="PTHR37463"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10013">
        <property type="entry name" value="DUF2256"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037205">
        <property type="entry name" value="UCP037205"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG62300.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="48" mass="5940" checksum="E37669988CFC1BE6" modified="2017-03-15" version="1">MPKMRKKRDLPQKTCPVCQKPFVWRKKWAKDWDSVRYCSERCRRAGVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LC04</accession>
    <name>A0A1M5LC04_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NADH:ubiquinone oxidoreductase subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0215</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62634.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898604.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0215"/>
    <dbReference type="EnsemblBacteria" id="SHG62634">
        <property type="protein sequence ID" value="SHG62634"/>
        <property type="gene ID" value="SAMN05444003_0215"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032981">
        <property type="term" value="P:mitochondrial respiratory chain complex I assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007763">
        <property type="entry name" value="NDUFA12"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12910">
        <property type="entry name" value="PTHR12910"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05071">
        <property type="entry name" value="NDUFA12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0830">Ubiquinone</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="106"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG62634.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="125" mass="14759" checksum="BCC22B4CA35ED13D" modified="2017-03-15" version="1">MANFIKRIFTWWDGQTFGTQFWTWRKGEKVGEDEVGNIFYRNADDSKRWVIYNGEIEASRISPEWHGWLHRTWDEPPTERPLVRKDWEQPHEENLTGTMAAYAPAGSLRQATPAARSDYEAWTPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LD91</accession>
    <name>A0A1M5LD91_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Response regulator receiver domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0227</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62946.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898633.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0227"/>
    <dbReference type="EnsemblBacteria" id="SHG62946">
        <property type="protein sequence ID" value="SHG62946"/>
        <property type="gene ID" value="SAMN05444003_0227"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="4"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG62946.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="122" mass="13594" checksum="0F368A5745BC0D5C" modified="2017-03-15" version="1">MGKRVLLIEDEPNIIEAISFILSRDGFTVHTHEDGETAMEKVRATPPDMIILDVMLPGRSGFDILRDLRADPITAGLPVLMLTARGQTKDRDLAERLGADHFMTKPFSNSEVRDHVRAVLEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LDQ6</accession>
    <name>A0A1M5LDQ6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0235</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63158.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898649.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0235"/>
    <dbReference type="EnsemblBacteria" id="SHG63158">
        <property type="protein sequence ID" value="SHG63158"/>
        <property type="gene ID" value="SAMN05444003_0235"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="47"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG63158.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="71" mass="7766" checksum="554D29FECA313DA8" modified="2017-03-15" version="1">MQYLIWIGTVISVIGLAGIIMSIVRVSKAKKANLSDEDMRERISKILPLNLGSLFLSVIGLMMVILGISFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LE29</accession>
    <name>A0A1M5LE29_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0214</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62613.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898602.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0214"/>
    <dbReference type="EnsemblBacteria" id="SHG62613">
        <property type="protein sequence ID" value="SHG62613"/>
        <property type="gene ID" value="SAMN05444003_0214"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035959">
        <property type="entry name" value="RutC-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006175">
        <property type="entry name" value="YjgF/YER057c/UK114"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01042">
        <property type="entry name" value="Ribonuc_L-PSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55298">
        <property type="entry name" value="SSF55298"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="48"/>
            <end position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG62613.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="127" mass="14163" checksum="9175C8C4E374D0E4" modified="2017-03-15" version="1">MTVRRISTGSPFEKQIGYSRAVVADGWVFVAGTTGYDYDTMVMPDSVADQCRNALNTIERALKEAESSLDEVVRVNYIVPDKDDWPECWPITSRAFAKALPAATMICADLQNPEMKIEIEVTARVSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LER7</accession>
    <name>A0A1M5LER7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Protein ImuB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0253</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63551.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0253"/>
    <dbReference type="EnsemblBacteria" id="SHG63551">
        <property type="protein sequence ID" value="SHG63551"/>
        <property type="gene ID" value="SAMN05444003_0253"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001126">
        <property type="entry name" value="UmuC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00817">
        <property type="entry name" value="IMS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="SSF56672"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UmuC" evidence="2">
        <location>
            <begin position="137"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="41"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="67"/>
            <end position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00817"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG63551.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="612" mass="67414" checksum="AD2C44E7C48F460F" modified="2017-03-15" version="1">MTAQDKLPVLAFPPPRPRPKPKASPRANPDDLARAIDALRGALEAELKKPKPVQDPRPEPESFSPIGTPTWRASDQMKSASGSGRAGVAAGAAAPTGPELERDLLARRVVAIHLPRFAMERWQRWATRQGDASPDDLPIALAIEGTHGPVVHATNRSAELQGVHTGARVVDMRALCPDLKVEFADIGGDQRALEKLMHWCRRWCPWTAVDGTAGLVMDTTGSDHLFGGEAQMMRDIEEKLSHLGLSANLAAAPTHGAAWALSRFGGVRDICAPETLPVHMAPLPVRALRLEPDTILLLKRLGLKTIGDLAAVPRVSLARRFNTAPLPQNPLLRLDQMMGKLAEPVNAPDDPPRFAVQSTLAEPVQDPTPHLPDLCAELCKGLHSEGFGARRVTLTIYRTDGEVAHVTVATAQASRDADHLLRLFDGKLDNINPGFGFDLITLAASVAENLHTHQTRLDGGVDDGAELARLVDRLSARLGSHNIRCALPLASHMPERTEEWRSALERAPQVAHLRPERPLRLFDPPEEVRVLYAVPEGPPAQFVWRRITHRVTRFSGPERIAPEWWRDSPGTRLRDYYRVEDHFGQRFWLYRDGVMGDGRGATPRWFLHGSFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LGB1</accession>
    <name>A0A1M5LGB1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AAA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0277</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64162.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0277"/>
    <dbReference type="EnsemblBacteria" id="SHG64162">
        <property type="protein sequence ID" value="SHG64162"/>
        <property type="gene ID" value="SAMN05444003_0277"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008533">
        <property type="entry name" value="DUF815"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05673">
        <property type="entry name" value="DUF815"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="1">
        <location>
            <begin position="76"/>
            <end position="201"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG64162.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="278" mass="30858" checksum="4F3ABC1DCFF6D1D4" modified="2017-03-15" version="1">MSDPLDRIADALERMSPAPIAAPDFDAATAFVWHPDPDRLVPVPEVNRVDVGLLVGIDRSRDTLMANTEQFAKGLPANNALLWGARGMGKSSLVKAIHGKLGVEYPDLKIVEVQREDLPTIGRCLNMLRGARHRFIMFCDDLSFSHDDAHYKSLKAVLDGGIEGRPDNVVLYATSNRRHLMPRDMIENERSTAITPGEAVEEKVSLSDRFGLWLGFHPCDQDQYLAMIRGYCDAHGVDISDEDLRAEAIEWQATRGSRSGRVAWQYFVDLAGSKGVTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LHX9</accession>
    <name>A0A1M5LHX9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 8 9">Dihydroorotase</fullName>
            <shortName evidence="8">DHOase</shortName>
            <ecNumber evidence="4 8 9">3.5.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">pyrC</name>
        <name evidence="11" type="ORF">SAMN05444003_0295</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 8">Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8 9">
            <text>(S)-dihydroorotate + H2O = H(+) + N-carbamoyl-L-aspartate</text>
            <dbReference type="Rhea" id="RHEA:24296"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30864"/>
            <dbReference type="ChEBI" id="CHEBI:32814"/>
            <dbReference type="EC" id="3.5.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8 9">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="8 9">Binds 2 Zn(2+) ions per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 8 9">Pyrimidine metabolism; UMP biosynthesis via de novo pathway; (S)-dihydroorotate from bicarbonate: step 3/3.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 8 9">Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class II DHOase subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.5.2.3" evidence="4 8 9"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64556.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898727.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0295"/>
    <dbReference type="EnsemblBacteria" id="SHG64556">
        <property type="protein sequence ID" value="SHG64556"/>
        <property type="gene ID" value="SAMN05444003_0295"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00070">
        <property type="reaction ID" value="UER00117"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004151">
        <property type="term" value="F:dihydroorotase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044205">
        <property type="term" value="P:'de novo' UMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019856">
        <property type="term" value="P:pyrimidine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01294">
        <property type="entry name" value="DHOase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00219">
        <property type="entry name" value="PyrC_classII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004721">
        <property type="entry name" value="DHOdimr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002195">
        <property type="entry name" value="Dihydroorotase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43137">
        <property type="entry name" value="PTHR43137"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01979">
        <property type="entry name" value="Amidohydro_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001237">
        <property type="entry name" value="DHOdimr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00856">
        <property type="entry name" value="pyrC_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00482">
        <property type="entry name" value="DIHYDROOROTASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00483">
        <property type="entry name" value="DIHYDROOROTASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 8 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7 8 9" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 9" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Amidohydro-rel" evidence="10">
        <location>
            <begin position="16"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="8">
        <location>
            <begin position="20"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="active site" evidence="8">
        <location>
            <position position="252"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="18"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="20"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="46"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" description="via carbamate group" evidence="8">
        <location>
            <position position="104"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="141"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="179"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="224"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="252"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="256"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="268"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-carboxylysine" evidence="8">
        <location>
            <position position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012860"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00219"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003440"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF01979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG64556.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="350" mass="38486" checksum="3E2F9F09167825AE" modified="2017-03-15" version="1">MPDRAITELTITRPDDWHLHLRDGAMLRAVLPETTRHFERAIVMPNLVPPVVTAADAAAYRDRIMAARPVGSNFTPLMMLYLTEDTDPDDVEHAHASGIATAVKLYPAGATTNSSSGVRDFDKVRPVLDRMAEIGMPLCVHGEVTDSEIDIFDREAVFIDRVLKPIRKKNPDLRVIMEHVTTEDAVDYVRDNRKNLAATITTHHLIINRNHVLAGGIRPHYYCLPVAKREKHRVALVQAAISGDKRFFLGTDSAPHTDANKLQSCGCAGVFSATNTMSCLAEVFEAAGALPKLEAFASLNGPAFYGLPANTDTITLRKGDPIAYPDHIETGDGPVTLFDPGFPLHWHIET</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LLD0</accession>
    <name>A0A1M5LLD0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Putative metalloprotease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_0360</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="6">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the peptidase M48 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65847.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898822.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0360"/>
    <dbReference type="EnsemblBacteria" id="SHG65847">
        <property type="protein sequence ID" value="SHG65847"/>
        <property type="gene ID" value="SAMN05444003_0360"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001915">
        <property type="entry name" value="Peptidase_M48"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01435">
        <property type="entry name" value="Peptidase_M48"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 6 8" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="1 6 8" id="KW-0645">Protease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Peptidase_M48" evidence="7">
        <location>
            <begin position="38"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG65847.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="228" mass="25611" checksum="30789321138398BB" modified="2017-03-15" version="1">MIKLTPILLAVLYGLVMYRFSVWRTSRELDAQSTELADPMLRTLMDRMAKALDIERIKVYIYEIEPVNGLAAPDGRIFITRGFFNKYRSGQVTADEMASVIAHELGHVALGHSRRRMIDFSSQNAMRTALAMMFNRFIPFIGPFIANFMMSILAARLSRSDEFEADAYASALLVKAGIGTEPQKSLFHKLEHLTGARGASVPAWIMSHPKTDRRIAAIEANEAKWAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LP71</accession>
    <name>A0A1M5LP71_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Anhydro-N-acetylmuramic acid kinase</fullName>
            <ecNumber evidence="2">2.7.1.170</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">AnhMurNAc kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">anmK</name>
        <name evidence="3" type="ORF">SAMN05444003_0400</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>1,6-anhydro-N-acetyl-beta-muramate + ATP + H2O = ADP + H(+) + N-acetyl-D-muramate 6-phosphate</text>
            <dbReference type="Rhea" id="RHEA:24952"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58690"/>
            <dbReference type="ChEBI" id="CHEBI:58722"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.170"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-sugar metabolism; 1,6-anhydro-N-acetylmuramate degradation.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Cell wall biogenesis; peptidoglycan recycling.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the anhydro-N-acetylmuramic acid kinase family.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.170" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66756.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898880.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0400"/>
    <dbReference type="EnsemblBacteria" id="SHG66756">
        <property type="protein sequence ID" value="SHG66756"/>
        <property type="gene ID" value="SAMN05444003_0400"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00343"/>
    <dbReference type="UniPathway" id="UPA00544"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016773">
        <property type="term" value="F:phosphotransferase activity, alcohol group as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097175">
        <property type="term" value="P:1,6-anhydro-N-acetyl-beta-muramic acid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006040">
        <property type="term" value="P:amino sugar metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009254">
        <property type="term" value="P:peptidoglycan turnover"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01270">
        <property type="entry name" value="AnhMurNAc_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005338">
        <property type="entry name" value="Anhydro_N_Ac-Mur_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30605">
        <property type="entry name" value="PTHR30605"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03702">
        <property type="entry name" value="AnmK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 2" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="2 3" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="15"/>
            <end position="22"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG66756.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="366" mass="38750" checksum="E1051888E7AAD3A2" modified="2017-03-15" version="1">MLKNRVVRAVGAMSGTSLDGIDTAEILTDGHTIRGFGDHSYHAYTDAERAALKAALGQWSEEVAPEVVELIETTHAAALKPYELADVIGFHGQTLAHDPNGRGTHQAGDGQILAEVLQKPVVWDFRTADVELGGQGAPLAPFFHFALAKYLEETAPITFLNLGGVGNLTWVDPSKEKPEEPDALLAFDTGPANAPINDLMQSRLGQPHDDNGALAKEGTVNGEIVATLLTHPYFYKMPPKSLDRDTFSDLATAVAPLSDADAAATLTAACALTISESMRHCPKPPTKLYVCGGGRQNATLMEMLRVSIDTPVHVIEEADLNGDMIEAQAFAFLAVRVLNGLPTSAPSTTGAKAAICGGTLSVPRHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LRM5</accession>
    <name>A0A1M5LRM5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Glutamate-ammonia-ligase adenylyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0437</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67626.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898932.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0437"/>
    <dbReference type="EnsemblBacteria" id="SHG67626">
        <property type="protein sequence ID" value="SHG67626"/>
        <property type="gene ID" value="SAMN05444003_0437"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008882">
        <property type="term" value="F:[glutamate-ammonia-ligase] adenylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023057">
        <property type="entry name" value="GlnE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005190">
        <property type="entry name" value="GlnE_rpt_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013546">
        <property type="entry name" value="PII_UdlTrfase/GS_AdlTrfase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30621">
        <property type="entry name" value="PTHR30621"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08335">
        <property type="entry name" value="GlnD_UR_UTase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03710">
        <property type="entry name" value="GlnE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0436">Ligase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GlnE" evidence="3">
        <location>
            <begin position="40"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="domain" description="GlnD_UR_UTase" evidence="4">
        <location>
            <begin position="296"/>
            <end position="437"/>
        </location>
    </feature>
    <feature type="domain" description="GlnE" evidence="3">
        <location>
            <begin position="523"/>
            <end position="763"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03710"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF08335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG67626.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="920" mass="101002" checksum="7BCA353AE9BC2D91" modified="2017-03-15" version="1">MTFENRMTARPRVFDADKAQEIKESIGWASGQVAELLQATASCSPYLEGLIRSESVWLESALADPEGAMDACLTDVKTLETAELSFGLRAAKLQVAVLTALADVAGVWPLETVTGYLSDFASLCVDQILKRLVADEIRRGKLPGQREEDGETAGGMVALAMGKMGAGELNYSSDIDLICLFDETRFDPDDYHDARAAFIRVTRKMTALLSDTKAGGYVFRTDLRLRPDASVTPVCLSMETAERYYESVGRTWERAAYIKAKACAGDVEAGQRFLKTLQPFVWRKHLDFAAIQDAHDMRLRIRDHKGLAGPLRLEGHNMKLGRGGIREIEFFTQTRQLIAGGRDQSLRARGTLEGLAALTEAGWVKEADRVALTDHYRFHRTVEHRLQMVRDAQTHHLPNDSEGFERLSAFLGRDTKELRADLQSRLEAVHDLTEGFFAPDATPEVDEAWGTDVTDRWVTYPALRSTRAQETFSRLKPEILTRLQDAAKPDEALAQFDAFLAGLPAGVQLFSLFEANPHLTDLLIEVASTSPALARYLSRNSSVLDAVLGGAFFTDWPEVEGLRAELSAALARTDDYETQLSLTRRWMKEWHFRIGVHHLRGLIDAKTSGVQYADLAEAVVASLFPCVQAEFERKHGRLTKSAAVVLGMGSLGARQLNALSDLDLIMIYNADSDDMSDGKRPLGTRQYYARFTQAFITALTAPMADGDLYEVDMRLRPSGRQGPVATSFDAFRSYQMSDAWTWEHLALTRARPVAGDVGLAEAIEAARTDVLAAKAKGETIAQDVADMRTRLEGAKATGNPWDMKTGGGRLQDIELFAQMLALRSGSAEGATAAQIDVGVADGQISAAEGQTLAQAVDLMWKVQSAGRLLAGGVLDPELIGEGGRRLVLRETGFETMDALRNAIEDLSVRSDSIISKGLEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LW44</accession>
    <name>A0A1M5LW44_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0508</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69226.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899033.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0508"/>
    <dbReference type="EnsemblBacteria" id="SHG69226">
        <property type="protein sequence ID" value="SHG69226"/>
        <property type="gene ID" value="SAMN05444003_0508"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025227">
        <property type="entry name" value="DUF4169"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13770">
        <property type="entry name" value="DUF4169"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG69226.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="58" mass="6658" checksum="721C60DA40FB1C37" modified="2017-03-15" version="1">MKPINLNKARKAKARDDAKARANKNAVKYGRTKAQRLLEATQQEQASKRLSELKFEDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LXG2</accession>
    <name>A0A1M5LXG2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">4-hydroxythreonine-4-phosphate dehydrogenase</fullName>
            <ecNumber evidence="4">1.1.1.262</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">4-(phosphohydroxy)-L-threonine dehydrogenase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">pdxA</name>
        <name evidence="5" type="ORF">SAMN05444003_0530</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L-threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>4-(phosphooxy)-L-threonine + NAD(+) = 3-amino-2-oxopropyl phosphate + CO2 + NADH</text>
            <dbReference type="Rhea" id="RHEA:32275"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57279"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:58452"/>
            <dbReference type="EC" id="1.1.1.262"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <cofactor evidence="4">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="4">
            <name>Co(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:48828"/>
        </cofactor>
        <text evidence="4">Binds 1 divalent metal cation per subunit. Can use ions such as Zn(2+), Mg(2+) or Co(2+).</text>
    </comment>
    <comment type="pathway">
        <text evidence="4">Cofactor biosynthesis; pyridoxine 5'-phosphate biosynthesis; pyridoxine 5'-phosphate from D-erythrose 4-phosphate: step 4/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="4">The active site is located at the dimer interface.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the PdxA family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.262" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69695.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899063.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0530"/>
    <dbReference type="EnsemblBacteria" id="SHG69695">
        <property type="protein sequence ID" value="SHG69695"/>
        <property type="gene ID" value="SAMN05444003_0530"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00244">
        <property type="reaction ID" value="UER00312"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050570">
        <property type="term" value="F:4-hydroxythreonine-4-phosphate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050897">
        <property type="term" value="F:cobalt ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042823">
        <property type="term" value="P:pyridoxal phosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008615">
        <property type="term" value="P:pyridoxine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00536">
        <property type="entry name" value="PdxA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037510">
        <property type="entry name" value="PdxA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005255">
        <property type="entry name" value="PdxA_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30004">
        <property type="entry name" value="PTHR30004"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04166">
        <property type="entry name" value="PdxA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00557">
        <property type="entry name" value="pdxA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0170">Cobalt</keyword>
    <keyword evidence="1 4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0520">NAD</keyword>
    <keyword evidence="4" id="KW-0521">NADP</keyword>
    <keyword evidence="3 4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-0664">Pyridoxine biosynthesis</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <feature type="binding site" evidence="4">
        <location>
            <position position="131"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="132"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="161"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="206"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="261"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="269"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="278"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="287"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG69695.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="324" mass="34074" checksum="D3BE6ABC3A2F31AF" modified="2017-03-15" version="1">MADPKPVAISCGEPAGIGIEITVDAWKSLKDDVPLLWLGDPNHLPKGTAFEVVPDPSEAREVCSRALPVWAMDFQTPRVAGTPDPTHAKGTISSIETAVGFVTGGKCAALCTAPIHKAALKEGADFAFPGHTEFLAHLAGRGDAVMMLACDELRVVPATIHIPLADVPEQLTARLLTDTILVTNAALKRDFGIDAPRMAVAGLNPHAGENGKMGSEEIEMISPVLDALRNEGLDISGPLSADTMFHAAARKTYDVAICMYHDQALIPIKTIDFSGGVNVTLGLPFVRTSPDHGTAFDIAGKGIADPTSMIAAIRMAAQMAEARS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M107</accession>
    <name>A0A1M5M107_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Outer membrane protein assembly factor BamA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">bamA</name>
        <name evidence="8" type="ORF">SAMN05444003_0587</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Part of the Bam complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the BamA family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70926.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899139.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0587"/>
    <dbReference type="EnsemblBacteria" id="SHG70926">
        <property type="protein sequence ID" value="SHG70926"/>
        <property type="gene ID" value="SAMN05444003_0587"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043165">
        <property type="term" value="P:Gram-negative-bacterium-type cell outer membrane assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051205">
        <property type="term" value="P:protein insertion into membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01430">
        <property type="entry name" value="OM_assembly_BamA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000184">
        <property type="entry name" value="Bac_surfAg_D15"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010827">
        <property type="entry name" value="BamA/TamA_POTRA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039910">
        <property type="entry name" value="D15-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023707">
        <property type="entry name" value="OM_assembly_BamA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034746">
        <property type="entry name" value="POTRA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12815">
        <property type="entry name" value="PTHR12815"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12815:SF23">
        <property type="entry name" value="PTHR12815:SF23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01103">
        <property type="entry name" value="Omp85"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07244">
        <property type="entry name" value="POTRA"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006076">
        <property type="entry name" value="OM_assembly_OMP85"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03303">
        <property type="entry name" value="OM_YaeT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51779">
        <property type="entry name" value="POTRA"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0677">Repeat</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 6" id="KW-1134">Transmembrane beta strand</keyword>
    <feature type="domain" description="POTRA" evidence="7">
        <location>
            <begin position="40"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="domain" description="POTRA" evidence="7">
        <location>
            <begin position="108"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="domain" description="POTRA" evidence="7">
        <location>
            <begin position="361"/>
            <end position="434"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004442"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01430"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51779"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG70926.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="770" mass="84964" checksum="C607F55DF666E1D4" modified="2017-03-15" version="1">MYNLSSRIDAVSASIKQRAAILFLAIFASFVATASFAQSFTFTSVTIDGNQRVEDGTILSLAGISRGQTISAAQLNAASQNIRETGLFETVDVIPQGSRLVITVVERPTINIINVEGNSEIRDAEVLAVVQSQSRRVYTPAQAERDVAAISELYANRGRINASVTARIIERSDNRVDLVFVVQETGLTEVERISFVGNRNFSDGRLRRVLDTKQAGLLRVLISSDTFARDRIAFDQRLLTDFYQSRGYADFQVLNVDVALTRERDAFLITFNVQEGQKFNFGQLTVVSEIPSASAAEFQAAIGTRPGSTYSPMKVENDIARLERLAIQKGIPFVRVEPRITRNDRDLVLDVTYALVRGERIFVERIDIEGNSTTLDRVIRNQFTVVEGDPFNPREIRQAAERIRALGLFANADVNAREGSGPDQVIVDVDVVEAPTGSLSFGGNYNTDTGLGLVASYRQSNFLGRGQSLSFQISTSESNRVASLDFVEPRLLGRDVRFGFSFDYSTTDNQNALYDTETFDFRPSLGFRVSDNGRLNVFYRAEFTDINDVDPAASIVIQNEADRGRITTNGVGYTYSYDTRRTGLNPNAGVLLRFGQEFGVGDSDFIRTTATAIAETKVFNEEVTLRATIEGGLLDYADNDSRVTDRFFLGNRVLRGFEASGIGPRDNDTDDALGGNKFAVARLEAEFPLGLPEEYGITGGVFLDHGSVWDVGNTFGADVLYNDYTARTVAGISIFWTTPIGPLRFNFTEALDAQDRDRTNSFDVTISTSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M6P7</accession>
    <name>A0A1M5M6P7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Serine-glyoxylate aminotransferase apoenzyme</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_0645</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 4 6">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72433.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899222.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0645"/>
    <dbReference type="EnsemblBacteria" id="SHG72433">
        <property type="protein sequence ID" value="SHG72433"/>
        <property type="gene ID" value="SAMN05444003_0645"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000192">
        <property type="entry name" value="Aminotrans_V_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020578">
        <property type="entry name" value="Aminotrans_V_PyrdxlP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024169">
        <property type="entry name" value="SP_NH2Trfase/AEP_transaminase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00266">
        <property type="entry name" value="Aminotran_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000524">
        <property type="entry name" value="SPT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00595">
        <property type="entry name" value="AA_TRANSFER_CLASS_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="3 4" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_5" evidence="7">
        <location>
            <begin position="35"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="4">
        <location>
            <position position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000524-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU004075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004504"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG72433.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="396" mass="42008" checksum="165CB413DBF63EBB" modified="2017-03-15" version="1">MSFQNPVFIPGPTNIPENLRKACDMPTIDHRSPLFGSILHPALDGVRQILKTTKAEVFIFPASGTGGWETAITNTLSAGDTILVARNGMFSHRWIDLCERHGLNVQIVETNWGDGISAEKYAEILSKDKALKIKAVLATHNETATGVKSDIASIGRAVKSVNHPALFMVDGVSSIGSMDFQFDNWGVDVAVTGSQKGFMLPAGLAILGFSERAMAATKSGTLHRTFFDVHDMQAGYANNAYPYTPAVGLMNGLNEACKMLLDEGLDNVFARHTRIASGVRAAVSAWGLELCATAPEFYSDTVSAIRTPAGFNATDIVTHAAETYGVAFGVGLGEVAGKVFRIGHLGSLTDVMALSGIATAEMCMVDLGLDIELGSGVAAAQEVYRAGPAIENRKVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M6U0</accession>
    <name>A0A1M5M6U0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0668</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0668"/>
    <dbReference type="EnsemblBacteria" id="SHG72978">
        <property type="protein sequence ID" value="SHG72978"/>
        <property type="gene ID" value="SAMN05444003_0668"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="52"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="79"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="103"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="138"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="167"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="220"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="255"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="287"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="311"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="344"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="374"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="13"/>
            <end position="397"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG72978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="402" mass="43275" checksum="B5B3FFAA175E2E4D" modified="2017-03-15" version="1">MTHDAKRLSQTEFIALMAMVAATVAFSIDAMLPALPEIGAELSPDALNNAQLILTSFVFGMGLGTFVTGPLSDTFGRKPVMIGGAVLYCGAAIWAFYAQTLEVMLIARTIQGLGAAGPRVVALAMIRDIYGGRDMARISSFVMLVFSLVPALAPTLGYFIIAGFGWRSIFLAFVIFSLATSIWLLIRQPETLLPENRRPLRIGKLIEATKEVLTTETTRLSMIVQTLGFGILFSSLSSIQQIFDLVFDEGEHFHYWFGSIAVISASASLLNARIVGKYGMRAIIRRMFQVNVTVALIMVACQFTGSETVRFWSFYVFVVSCFFGAGMTIGNLNALAMEPLPHIAGLAASAIAAVATVGAVFIAIPVGLAFNGTPVPLGLAVALLATVAFWFTTKIKRPSDED</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M903</accession>
    <name>A0A1M5M903_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Homoserine O-acetyltransferase</fullName>
            <shortName evidence="4">HAT</shortName>
            <ecNumber evidence="4">2.3.1.31</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Homoserine transacetylase</fullName>
            <shortName evidence="4">HTA</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">metAA</name>
        <name evidence="6" type="ORF">SAMN05444003_0704</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>acetyl-CoA + L-homoserine = CoA + O-acetyl-L-homoserine</text>
            <dbReference type="Rhea" id="RHEA:13701"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:57476"/>
            <dbReference type="ChEBI" id="CHEBI:57716"/>
            <dbReference type="EC" id="2.3.1.31"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4">Amino-acid biosynthesis; L-methionine biosynthesis via de novo pathway; O-acetyl-L-homoserine from L-homoserine: step 1/1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the MetA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.31" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73767.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899328.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0704"/>
    <dbReference type="EnsemblBacteria" id="SHG73767">
        <property type="protein sequence ID" value="SHG73767"/>
        <property type="gene ID" value="SAMN05444003_0704"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00051">
        <property type="reaction ID" value="UER00074"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004414">
        <property type="term" value="F:homoserine O-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008899">
        <property type="term" value="F:homoserine O-succinyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019281">
        <property type="term" value="P:L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03131">
        <property type="entry name" value="GATase1_HTS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00295">
        <property type="entry name" value="MetA_acyltransf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005697">
        <property type="entry name" value="HST_MetA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033752">
        <property type="entry name" value="MetA_family"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20919">
        <property type="entry name" value="PTHR20919"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04204">
        <property type="entry name" value="HTS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000450">
        <property type="entry name" value="H_ser_succinyltr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01001">
        <property type="entry name" value="metA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="4" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="1 4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0486">Methionine biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4 6" id="KW-0808">Transferase</keyword>
    <feature type="active site" description="Acyl-thioester intermediate" evidence="4 5">
        <location>
            <position position="142"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="4">
        <location>
            <position position="234"/>
        </location>
    </feature>
    <feature type="active site" evidence="4">
        <location>
            <position position="236"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="163"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="192"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="248"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Important for acyl-CoA specificity" evidence="4">
        <location>
            <position position="111"/>
        </location>
    </feature>
    <feature type="site" description="Important for substrate specificity" evidence="4">
        <location>
            <position position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000450-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG73767.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="304" mass="34702" checksum="4064A83A36F32145" modified="2017-03-15" version="1">MPIKLPSALPAFDVLSREGVMVMGEDTASRQDIRPLRIALLNLMPKKIDTENQFARLIGATPLQIELTLLRMSEHKTKNTAAAHMAEFYQPFQDVKDQKFDGLIITGAPIEHLEFTDVTYWDELREVMEWTQTNVHSTFGVCWGGMAMINYFHGVKKHMLEAKAFGCFRHVNTAPNSPYLRGFSDDCVIPVSRWTEMKQDEIDAAGLQTLLTSDEVGPALVEDKDHCALYIFNHFEYDSGTLKGEYDRDIANGTPINVPVNYYPENDPAEQPMNRWRSHAHLLYGNWINEIYQSTHYNIDEIGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MAP2</accession>
    <name>A0A1M5MAP2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Membrane-anchored ribosome-binding protein, inhibits growth in stationary phase, ElaB/YqjD/DUF883 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0714</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899345.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0714"/>
    <dbReference type="EnsemblBacteria" id="SHG73969">
        <property type="protein sequence ID" value="SHG73969"/>
        <property type="gene ID" value="SAMN05444003_0714"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043605">
        <property type="entry name" value="DUF883_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19029">
        <property type="entry name" value="DUF883_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF883_C" evidence="1">
        <location>
            <begin position="77"/>
            <end position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF19029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG73969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="103" mass="11447" checksum="71C431C4150A80A1" modified="2017-03-15" version="1">MTEATEGTGRNDVERQFQVVRDDIVELSRLLREIGETKAVAQRDAAIAEAETVLNRSKEILEEGRERARQSTQSIEDQIKEKPLQAAAVALGVGFLVGLITRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MBB8</accession>
    <name>A0A1M5MBB8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Lyso-ornithine lipid acyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0724</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74199.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899369.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0724"/>
    <dbReference type="EnsemblBacteria" id="SHG74199">
        <property type="protein sequence ID" value="SHG74199"/>
        <property type="gene ID" value="SAMN05444003_0724"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002123">
        <property type="entry name" value="Plipid/glycerol_acylTrfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01553">
        <property type="entry name" value="Acyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00563">
        <property type="entry name" value="PlsC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="domain" description="PlsC" evidence="2">
        <location>
            <begin position="90"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG74199.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="273" mass="30337" checksum="34614F8E15E70D13" modified="2017-03-15" version="1">MSSTWYSDDIPPRPPVGARGAVVAILRGALLLTLIVAGLLVLLFLRLLERPVFGSKRPVTPWITQGVCRTALLILGIRYRITGQPIVSSGALVANHSSWLDIFALNAATRLYFVSKLEVAGWPGIGWLARATGTVFVVRDRKEAHHQVKLFEDRLREGHKLLFFPEGTSTDGLQVLPFKPTLFAAFFGKEFDGMKLQAVTLNYAAPEGRDQRFYGWWGDMDMGPHLWSVLGTLKQGSIEVVFHPPVVRTGYADRKVMAKELETQVRDALTAKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MDH3</accession>
    <name>A0A1M5MDH3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Recombinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0774</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75315.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899437.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0774"/>
    <dbReference type="EnsemblBacteria" id="SHG75315">
        <property type="protein sequence ID" value="SHG75315"/>
        <property type="gene ID" value="SAMN05444003_0774"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000150">
        <property type="term" value="F:DNA strand exchange activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1390">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011109">
        <property type="entry name" value="DNA_bind_recombinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006119">
        <property type="entry name" value="Resolv_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036162">
        <property type="entry name" value="Resolvase-like_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07508">
        <property type="entry name" value="Recombinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00239">
        <property type="entry name" value="Resolvase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00857">
        <property type="entry name" value="Resolvase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53041">
        <property type="entry name" value="SSF53041"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51736">
        <property type="entry name" value="RECOMBINASES_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Resolvase/invertase-type recombinase catalytic" evidence="1">
        <location>
            <begin position="3"/>
            <end position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51736"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG75315.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="237" mass="26527" checksum="D485F3E4F1D40CC6" modified="2017-03-15" version="1">MKQYVIYRRVSTKDQGKSGLGLEAQNRDIAIFLENFSEEPFKVIGEFEEHLSGKDDDRPMLAEALQLVKKTGAELLVSKLDRLSRKVSFIANLMDDPKVKLRVASMPNAGLFELHIYAALAEQERKFISMRTKAALAPIKEEQRRAKEEAIRNNMPIPKPRLGGLRDKTMRRNAAIQVNAKARADKVAGIVQPLRKQGASLRAIADTLNASEVPTARGGVWQASQVKRVLERLDRVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MDK6</accession>
    <name>A0A1M5MDK6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Heat shock protein HslJ</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_0778</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75408.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899448.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0778"/>
    <dbReference type="EnsemblBacteria" id="SHG75408">
        <property type="protein sequence ID" value="SHG75408"/>
        <property type="gene ID" value="SAMN05444003_0778"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.128.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.128.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005184">
        <property type="entry name" value="DUF306_Meta_HslJ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038670">
        <property type="entry name" value="HslJ-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018660">
        <property type="entry name" value="MliC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036328">
        <property type="entry name" value="MliC_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039366">
        <property type="entry name" value="Pilotin"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03724">
        <property type="entry name" value="META"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09864">
        <property type="entry name" value="MliC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09619">
        <property type="entry name" value="YscW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141488">
        <property type="entry name" value="SSF141488"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0564">Palmitate</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 5" id="KW-0732">Signal</keyword>
    <keyword evidence="8" id="KW-0346">Stress response</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5011957312" evidence="5">
        <location>
            <begin position="20"/>
            <end position="412"/>
        </location>
    </feature>
    <feature type="domain" description="MliC" evidence="7">
        <location>
            <begin position="124"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="domain" description="META" evidence="6">
        <location>
            <begin position="299"/>
            <end position="399"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF03724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF09864"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG75408.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="412" mass="44173" checksum="6A2A906652ED090D" modified="2017-03-15" version="1">MLRVILNAAILAFASQASAEGEHVVSGSATYLPRIALSPNAVLMLEAQTADGRLISEERIATEGQQVPLPFEMTVESDGEYQLRVGIAEAGQVIWLGDPVSVTQDDVGEIILALYTAPLFDFTYRCGEQMIQTTYVGETLIMDSGSDRQPLQQVRSASGAKYELEEDPNTFFWSQGDTALVSLNGYQLPECNLALPLQADYKAVGLEPFWSVSLDTETMELEREGMEDLSLQSSEAKMDERGDITIIASDTGRALRAVMLRQSIECSFAPEAIPYPETVSLSMGDETITGCGGDPWAYLTARTWVVEDINGQGVIDIARTTIGFASSGAILGSGSCNRYNGTAALSATTLEIGPVAATLMMCPEALMNQERKLFDAFEKVSSFKVDETGALILNGSEGALITAHAATDGSAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MDS0</accession>
    <name>A0A1M5MDS0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized conserved protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0776</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75361.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0776"/>
    <dbReference type="EnsemblBacteria" id="SHG75361">
        <property type="protein sequence ID" value="SHG75361"/>
        <property type="gene ID" value="SAMN05444003_0776"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.600">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1610">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010621">
        <property type="entry name" value="DUF1214"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037049">
        <property type="entry name" value="DUF1214_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010679">
        <property type="entry name" value="DUF1254"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037050">
        <property type="entry name" value="DUF1254_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06742">
        <property type="entry name" value="DUF1214"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06863">
        <property type="entry name" value="DUF1254"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1254" evidence="3">
        <location>
            <begin position="88"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="domain" description="DUF1214" evidence="2">
        <location>
            <begin position="371"/>
            <end position="476"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="6"/>
            <end position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF06742"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF06863"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG75361.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="493" mass="55496" checksum="9A16B27773EA5C4B" modified="2017-03-15" version="1">MIIRLCSSAEGNAPRTADSKPPTNDGLHSPPLVEQVNDGNWLDPDEAQSLRDEQFYQRAIYAYQTMLPALNVIGMRDGSEAVFGTGYNVLPIWKDRMDSRTWVPTPNADVIYSMSYLDLKVSGPLVVAAPANVIGMFTDFFQRTITDVGAIGPDRARGGLYLLLPPNYDGHVPDSYFSFESPTYNVFLFFRTVMAKGEKGPDPSPAVALAEKTRIYPLWAQEKEIRAMEFPNASGKRVDMMYPVDATYWDKLKDFVDYEPTSAITPELRGVLASIGIVKGLTFEPDQRQRELLAKAVEVAPRMILANRQLGRADGRDRYYEDRQYLRAWAAATAEWMQESYLDIDQRAAFFQYAYSSAPAMVQRTIGAGSKYPVAFCDENGRYLDGSNTYRMRLPAHPPAAFFWAVTAYNITDGTMPETDQLLPSTNSYYDVATNEDGSVDIWFGPQQPENVGDTNFIQTIPNRHFMAVLRLYGAEVEFFDQTWKPDDLVKVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MJ91</accession>
    <name>A0A1M5MJ91_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ppx/GppA phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0843</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899541.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0843"/>
    <dbReference type="EnsemblBacteria" id="SHG76969">
        <property type="protein sequence ID" value="SHG76969"/>
        <property type="gene ID" value="SAMN05444003_0843"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003695">
        <property type="entry name" value="Ppx_GppA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02541">
        <property type="entry name" value="Ppx-GppA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ppx-GppA" evidence="2">
        <location>
            <begin position="44"/>
            <end position="359"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02541"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG76969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="370" mass="40380" checksum="13C04FA9672E857E" modified="2017-03-15" version="1">MAPKRPKGAVAFPKAVETPAPKSPDPETLYAALDLGTNSCRMLIAQPKGSQFHVIDSFSKAVQLGQGLEGSGRLSRSSMNRTISAMRICKHKLERHGVQRMRLVATEACRRARNGVAFVKQVNKETGLNLEIIKPEEEARLAVVSCAPLVSTKTEQLLVVDIGGGSTELVWVDLTKVPPRERPRSIMRLHAGFKSDPGPFAAAKVVDWISVPLGVATLRDQFADVEDDAARFALMSWFFEENLADFSPYAAEQAKENFQIVGTSGTVTTVAASHLGLKRYDRTKVDGLRMTSDQIDAVIHGYLSLGPEGRRADPRIGKDRQALIMSGSAILQALMRLWPTDRLSVADRGLREGLLYAQMSADGALEDAPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MK47</accession>
    <name>A0A1M5MK47_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ASCH domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0876</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77740.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899582.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG77740">
        <property type="protein sequence ID" value="SHG77740"/>
        <property type="gene ID" value="SAMN05444003_0876"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007374">
        <property type="entry name" value="ASCH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015947">
        <property type="entry name" value="PUA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04266">
        <property type="entry name" value="ASCH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88697">
        <property type="entry name" value="SSF88697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ASCH" evidence="1">
        <location>
            <begin position="11"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG77740.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="179" mass="19975" checksum="705665271514AAA6" modified="2017-03-15" version="1">MGEHDLPPIAMSVRQPWAWAIVAGHKRIENRTRGAIRSGGMDCRRIAIHAAKGLKEDEFHWGYWRLHRHGVQCPHPAELPRSAIIGVCEVVDIIEQSDSEWFGGPCGLVLENASMFDPIPAKGALGYFEWQKGGTLAPPTMWMNSFDAPNGDENTLSLFDRLEPSFKTDPSRPSRKQSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MPA5</accession>
    <name>A0A1M5MPA5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 12">Heme exporter protein B</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">SAMN05444003_0943</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 12">Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cell inner membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 12">Belongs to the CcmB/CycW/HelB family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79230.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899683.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0943"/>
    <dbReference type="EnsemblBacteria" id="SHG79230">
        <property type="protein sequence ID" value="SHG79230"/>
        <property type="gene ID" value="SAMN05444003_0943"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015232">
        <property type="term" value="F:heme transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017004">
        <property type="term" value="P:cytochrome complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003544">
        <property type="entry name" value="Cyt_c_biogenesis_CcmB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026031">
        <property type="entry name" value="Cyt_c_CcmB_bac"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30070">
        <property type="entry name" value="PTHR30070"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03379">
        <property type="entry name" value="CcmB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002764">
        <property type="entry name" value="CcmB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01190">
        <property type="entry name" value="ccmB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 12" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="7 12" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="12" id="KW-0201">Cytochrome c-type biogenesis</keyword>
    <keyword evidence="11 12 13" id="KW-0472">Membrane</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 13" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10 13" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6 12" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="12"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="43"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="99"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="126"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="156"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="190"/>
            <end position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002442"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010544"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00016452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRNR" id="PIRNR002764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="SHG79230.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="218" mass="22592" checksum="9AA28FCC69BEC8C4" modified="2017-03-15" version="1">MKALLLRDLRLAIRAGGGLGLGLAFFLIVIVLVPFGVGPERELLSAIAPGVLWVAALLASLLSLDRIFALDFEDGALALLATSPLPLEGAALIKAAAHWITTGLPLTIVAPLLGFLLNLETTAYSFLWISLLIGTPALSVIGTFGAALTVGLKRGGLLLSLLVLPLYVPTLIFGAEVVRRGADGLNATTPMLLLAGITAVAFALLPFASAAVLRVNLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MQE0</accession>
    <name>A0A1M5MQE0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">FAD dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0964</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79620.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899710.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0964"/>
    <dbReference type="EnsemblBacteria" id="SHG79620">
        <property type="protein sequence ID" value="SHG79620"/>
        <property type="gene ID" value="SAMN05444003_0964"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039650">
        <property type="entry name" value="HdrA-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43498">
        <property type="entry name" value="PTHR43498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG79620.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="452" mass="48967" checksum="992CF614773F5909" modified="2017-03-15" version="1">MHITEPARQIDVIHTTDVLVVGAGPGGLAAALAAARAGVQVTLVERFGCFGGNITTVGVEGFAWYRHEKTVEANGIGREFEDRAKAMGAAVPESQSLSYELDSEGFKVVADQLVEEAGITPMLHRMFVAPIMEGDRITGIITESKAGREAILCKVVIDATGDADIAHRAGAPVTHPPREELQAASVMFHVAGVDKARFMDDVRENPQTYADWSTGEWTVETDGKEDEMFSPFLKKPFEVARDAGVIPSDLTTIAGTWGAVHDSGEMTYMNLVHLGNCDGTDPADLTHFEIEGRRQAMMAIEALRRFAPGCQEVRLRNFGMTLGVRDTRKIDAVYNMTENDVRHEARFEDSIGIYPEFIDGYGILILPTTGRYMHIPYRSLLPKSVKGLLVAGRATGGDRVAHAATRNMACCAVAGQGAGIAAAQAVKSNAELDMVDLDAVHKELDRQGVRRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MQG8</accession>
    <name>A0A1M5MQG8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0955</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79447.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899702.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0955"/>
    <dbReference type="EnsemblBacteria" id="SHG79447">
        <property type="protein sequence ID" value="SHG79447"/>
        <property type="gene ID" value="SAMN05444003_0955"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="27"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG79447.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="218" mass="23002" checksum="FC1561357BD6DF69" modified="2017-03-15" version="1">MSDTDSFINEVTEEVQRDKLYGYVRRYGWIAALLIIGLVGGAAWNEYHKASAVTLAENTGDALMDALELNDIFARPAALADVTGEGPAVAVTALATAAAQQEAGNLEAAAATLNELAINTDVPPIYADLAAFKLALIDTGDDAARRALLEGLAQPGEPFNLLAQEQLAYMDLSTGNQDAAVTTLRAIIEDAGVTRGLRDRAQTMIVALGEELEPSPTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MTR6</accession>
    <name>A0A1M5MTR6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">NADH-quinone oxidoreductase subunit A</fullName>
            <ecNumber evidence="6">7.1.1.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">NADH dehydrogenase I subunit A</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">NDH-1 subunit A</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">NUO1</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">nuoA</name>
        <name evidence="8" type="ORF">SAMN05444003_1016</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6 7">
            <text>a quinone + 5 H(+)(in) + NADH = a quinol + 4 H(+)(out) + NAD(+)</text>
            <dbReference type="Rhea" id="RHEA:57888"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="6">NDH-1 is composed of 14 different subunits. Subunits NuoA, H, J, K, L, M, N constitute the membrane sector of the complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6 7">Cell membrane</location>
            <topology evidence="6 7">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the complex I subunit 3 family.</text>
    </comment>
    <dbReference type="EC" id="7.1.1.-" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80671.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899758.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1016"/>
    <dbReference type="EnsemblBacteria" id="SHG80671">
        <property type="protein sequence ID" value="SHG80671"/>
        <property type="gene ID" value="SAMN05444003_1016"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008137">
        <property type="term" value="F:NADH dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048038">
        <property type="term" value="F:quinone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.1610">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01394">
        <property type="entry name" value="NDH1_NuoA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023043">
        <property type="entry name" value="NAD(P)H_OxRDtase_bac/plastid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000440">
        <property type="entry name" value="NADH_UbQ/plastoQ_OxRdtase_su3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038430">
        <property type="entry name" value="NDAH_ubi_oxred_su3_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11058">
        <property type="entry name" value="PTHR11058"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00507">
        <property type="entry name" value="Oxidored_q4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 7" id="KW-0520">NAD</keyword>
    <keyword evidence="6 7" id="KW-0874">Quinone</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-1278">Translocase</keyword>
    <keyword evidence="3 6 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 6" id="KW-0813">Transport</keyword>
    <keyword evidence="6" id="KW-0830">Ubiquinone</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="63"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="90"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01394"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003639"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG80671.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="121" mass="13778" checksum="140B361B75B0D2DB" modified="2017-03-15" version="1">MQEMLSEYLPIMIFLGLAIALGLILILAAAIVAVRNPDPEKVSAYECGFNAFDDARMKFDVRFYLVSILFIIFDLEVAFLFPWAVAFKDISMVGFWSMMVFLGVLTVGFAYEWKKGALEWE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MUK2</accession>
    <name>A0A1M5MUK2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">LprI domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1025</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80847.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899765.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1025"/>
    <dbReference type="EnsemblBacteria" id="SHG80847">
        <property type="protein sequence ID" value="SHG80847"/>
        <property type="gene ID" value="SAMN05444003_1025"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009739">
        <property type="entry name" value="LprI_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07007">
        <property type="entry name" value="LprI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012680290" description="LprI domain-containing protein" evidence="1">
        <location>
            <begin position="18"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="domain" description="LprI" evidence="2">
        <location>
            <begin position="44"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG80847.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="159" mass="17822" checksum="885B329A6090C77F" modified="2017-03-15" version="1">MKWSALALVMLASPVVAEQHLAELRQSILSCESRDCVGEAASFCMDNTEGGQSTFGMQNCLIQEMQIWDELLNEAYGDARATAKSLDAADLETFPEYAVRETQVRDAQRAWITYRDANCAMDYGLWGSGSMRVIWGAECLLRMTAERTFELRIYADGLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N0R5</accession>
    <name>A0A1M5N0R5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Oligoendopeptidase F</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_1123</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="6">Binds 1 zinc ion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the peptidase M3 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83045.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899849.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1123"/>
    <dbReference type="EnsemblBacteria" id="SHG83045">
        <property type="protein sequence ID" value="SHG83045"/>
        <property type="gene ID" value="SAMN05444003_1123"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1370.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013647">
        <property type="entry name" value="OligopepF_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042088">
        <property type="entry name" value="OligoPept_F_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045090">
        <property type="entry name" value="Pept_M3A_M3B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001567">
        <property type="entry name" value="Pept_M3A_M3B_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011977">
        <property type="entry name" value="Pept_M3B_clade3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11804">
        <property type="entry name" value="PTHR11804"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01432">
        <property type="entry name" value="Peptidase_M3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08439">
        <property type="entry name" value="Peptidase_M3_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02290">
        <property type="entry name" value="M3_fam_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 6" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="1 6" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Peptidase_M3_N" evidence="8">
        <location>
            <begin position="126"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M3" evidence="7">
        <location>
            <begin position="348"/>
            <end position="590"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF08439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG83045.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="605" mass="68283" checksum="F1A8398D6616C79E" modified="2017-03-15" version="1">MRFPSPVFDANANGGGDFGDLPEWDLTDLYPAEDSKELTSDLEWLEKECASFAADYEGKLAGLDAAGMLKAVQRNEKISEIAGRIMSFAGLRYYQITTDAERAQFMANMQDKITNFTTPLVFYSLEFNRLDDDALAGMLAENADLARYKPVFDRMRAMKPYQLSDELEKFLHDQSTVGAAAWNRLFDETMAGLEFTVDGETLNLEATLNLLTEKDRNKREAAIHALAAVFQENIKIFARVHNTLAKEKEIEDRWRNLPTPQTGRHLSNHVEAEVVEALRNSVVAAYPRLSHRYYKLKAKWLGLDRMQVWDRNAPLPLEDDKLVDWDEATKTVLDAYGDFDPKMADLAKPFFTEGWIDAPVKPGKAPGAFAHPTVTTVHPYVMLNYLGKPRDVMTLAHELGHGVHQVLAAEQGEFLSSTPLTLAETASVFGEMLTFRKMLDGAKTKDERKVLLANKVEDMINTVIRQIAFYDFECKLHAARAEGELTPDDINALWMSVQAESLGEIFDFADGYETFWAYIPHFVHSPFYVYAYAFGDGLVNALYAVYEEGDPDFHEKYFDMLKAGGSKHHKELLAPFGLDASDPAFWDKGLSMIEGFIDELEAMED</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N1C3</accession>
    <name>A0A1M5N1C3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_1137</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83376.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1137"/>
    <dbReference type="EnsemblBacteria" id="SHG83376">
        <property type="protein sequence ID" value="SHG83376"/>
        <property type="gene ID" value="SAMN05444003_1137"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011623">
        <property type="entry name" value="7TMR_DISM_rcpt_extracell_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07695">
        <property type="entry name" value="7TMR-DISM_7TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="204"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="233"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="260"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="294"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="323"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="350"/>
            <end position="369"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="381"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="5">
        <location>
            <begin position="434"/>
            <end position="636"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG83376.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="637" mass="70755" checksum="3128953F4DF89150" modified="2017-03-15" version="1">MAKQLKLLGILLRSLCVFIGVSCTPLLAVADDQRVLVLDEAQAPFNLAEYSSYLIDPVAFETTWQDRLQLEGLIGLPATSFAPVTTRKIGFGWSNAVHHIKTPLVNPTDQTQAWVLAFNQIAWGHKVAYLVIEGEPLPTEPLFIFPDVEPWQDRDRFQHIEFEMPSNGRGTLYVSYANNSSYAPLSIENAGTYETRRMVSELRIYILLGLVLGVTVLTVSLLGVLYQRVAVFYALYLTFSTFHLCYVLGLFPFIPFLAEYVYPIMRFWWAAFALMSYLLFQRSFFATAPQVPKWVGRVLLVAAGLVLATTFAFDFLGAPFEPVIVWSSVCICLIAANGIVAIIKRVSGRWFFAAGCLMLVVMLVPLNLSDFLTAHYTYEEAATVFLFGLAFEAIALSCAMFARVRELRAEKEEALVAELKAAEERRTMSERLATAAHDIQQPLTSMKLAAQDNQKQLDELGGAIEFLDEIVKSQLTGDGIEHKPPSSDAGEREEIELNVILDNLKTMFTAEADDKGLTFETVPTSKIAFVNAFALMRVLSNLVSNAIKNTDTGGVTVQSIADEDRVGVEVRDTGPGLSPEQLSKLKTPYHRAGDYDGHGLGLAIVEQLCAENRFEMRVEPNEPQGTSFQIWLPAPED</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N8U5</accession>
    <name>A0A1M5N8U5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1245</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85872.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899953.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1245"/>
    <dbReference type="EnsemblBacteria" id="SHG85872">
        <property type="protein sequence ID" value="SHG85872"/>
        <property type="gene ID" value="SAMN05444003_1245"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008557">
        <property type="entry name" value="PhoX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05787">
        <property type="entry name" value="DUF839"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="451"/>
            <end position="470"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG85872.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="627" mass="67930" checksum="D5C2E56A8AC0E6E5" modified="2017-03-15" version="1">MDDTSHIDMSWDDFDEMRDPRPDENQFDAVVERAVSRRGFLGGALAFGSGAAVFGTGLFSTTTAAKAGGHAKFNFTPIDIATDFEVHVPKGYSTKILARWGDPLFSDADGAYSAATGVPLDMSEKVFGENTDGMELFDVDGKEVIAVNSEYVNPKINLPAASEGTPQNADEVQLLKNLQGVTVMEVADNGNGYEIVVDSPYNRRITHETDMVLAGPLAGHELVKTAADPTGMAVKGTMNNCGSGRTLWGTYLTCEENFNGYFGATGEEPAGEGYARYGIGGEGRYAYEKFDPRYDISNEPNEPHRHGFITEIDPSDPTSTPIKRTALGRFKHENASMAHASDGRVVVYMGDDERGEYLYRYVSNGTYEEGGPTEGLLDDGTLYVAKFNDDMTGEWLPLTPETVDMEVAEVLCFTRMAASAAGGTTMDRPEWVATNPVKVEAYCALTNNKNRGVKPNAGGDETPVNGPNPRETNNYGQIVRWTPADENHASDAFTWDLYVMAGNPEVYDNEYGGSDNVTPGNMFNSPDGMAFSSDGLLWIQTDGNYKNEEDFAGMGNNQMLVGDPETGEIARFMTVPYGAEVTGLTWSLDKKVAFVGVQHPGGSWPDGEGHPRSSVVAVWRDDGVAFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N9C3</accession>
    <name>A0A1M5N9C3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Pseudouridine synthase</fullName>
            <ecNumber evidence="4">5.4.99.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1258</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a uridine in RNA = a pseudouridine in RNA</text>
            <dbReference type="Rhea" id="RHEA:48348"/>
            <dbReference type="Rhea" id="RHEA-COMP:12068"/>
            <dbReference type="Rhea" id="RHEA-COMP:12069"/>
            <dbReference type="ChEBI" id="CHEBI:65314"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the pseudouridine synthase RsuA family.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.-" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86120.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1258"/>
    <dbReference type="EnsemblBacteria" id="SHG86120">
        <property type="protein sequence ID" value="SHG86120"/>
        <property type="gene ID" value="SAMN05444003_1258"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0120159">
        <property type="term" value="F:rRNA pseudouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000455">
        <property type="term" value="P:enzyme-directed rRNA pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd00165">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1560">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.580">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042092">
        <property type="entry name" value="PsdUridine_s_RsuA/RluB/E/F_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020103">
        <property type="entry name" value="PsdUridine_synth_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006145">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000748">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluB/E/F"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018496">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluB_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002942">
        <property type="entry name" value="S4_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036986">
        <property type="entry name" value="S4_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020094">
        <property type="entry name" value="TruA/RsuA/RluB/E/F_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00849">
        <property type="entry name" value="PseudoU_synth_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01479">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00363">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55120">
        <property type="entry name" value="SSF55120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00093">
        <property type="entry name" value="TIGR00093"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01149">
        <property type="entry name" value="PSI_RSU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="S4" evidence="6">
        <location>
            <begin position="23"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="250"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="250"/>
            <end position="264"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008348"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG86120.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="280" mass="31137" checksum="7EA18F2F07D2AE2F" modified="2017-03-15" version="1">MSLPRWGCVAYGVGMSNTPPPGDRIAKVLSRAGVASRREAERLIEAGKVSVNGKVITSPALNVTEKDRISVDGKPVKEPDAERIWLYHKPAGLVTTERDEKGRDTVFAALPEDMPRVMSVGRLDLNSEGLLLLTNDGGVKRKLELPSTGWLRRYRVRVKGSVTEPQLEQLRKGITVEGVRYQPMDVTFDRQQGANAWLTIALREGKNREIRRAMEAIGAVVNRLIRVSYGPFQLGNLKSGEVEEVKRRVVRDQLGLDPKPKPQRTRTKGAKPTMGKKRKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5ND91</accession>
    <name>A0A1M5ND91_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Cell division and transport-associated protein TolR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_1345</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the ExbD/TolR family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87534.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900038.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1345"/>
    <dbReference type="EnsemblBacteria" id="SHG87534">
        <property type="protein sequence ID" value="SHG87534"/>
        <property type="gene ID" value="SAMN05444003_1345"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003400">
        <property type="entry name" value="ExbD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014168">
        <property type="entry name" value="Tol-Pal_TolR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30558">
        <property type="entry name" value="PTHR30558"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02472">
        <property type="entry name" value="ExbD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02801">
        <property type="entry name" value="tolR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="9" id="KW-0132">Cell division</keyword>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0653">Protein transport</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="38"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005811"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG87534.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="159" mass="16490" checksum="30C4067738278F7E" modified="2017-03-15" version="1">MGAGVMKSSGGGGGRRRRRSATRTQPMSEINVTPFVDVMLVLLIIFMVAAPLLTVGVPVNMPETAASALPTDQEEPLTVSIKADGSLAIQETDISDGDLIARLTAIAAERDSDRIFLRADGANDWDRVATVMGALNAAGFSNIGLVTDIGGPTFTGSDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NDD0</accession>
    <name>A0A1M5NDD0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cell division and transport-associated protein TolA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1344</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87518.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900037.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1344"/>
    <dbReference type="EnsemblBacteria" id="SHG87518">
        <property type="protein sequence ID" value="SHG87518"/>
        <property type="gene ID" value="SAMN05444003_1344"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="3" id="KW-0132">Cell division</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="7"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="51"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="79"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="143"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="189"/>
            <end position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG87518.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="364" mass="38148" checksum="281D75243824978F" modified="2017-03-15" version="1">MQSAGTYISGAGHVGLVVWLVLGWGFASEPLPFEIADVSVVTGEEFAALQRATTPDPETETPIAPAAPAIEEAPEPPVEVEAPEPAPLPEEVEPPVEETAPPEAPEPPAPVADVTDEVPEITSPDLVEQPEISEEIVTDTPNAAPAQVISPSQVPQPQTDAPVSVDTTPAVRPEEPTEEAPAEEPEETTSAPDSAQTTSVENLEVSGAPETSIRPAARPRRPTPEPEPEAEVAETQPSTAQQVEDVLAGIDLGEAIEQGPPMTGSERDAFRVAVNACWVVDTGAASANVTVEVAFSLSRDGKVESGPTLVSASGGSDAAQRAAFESARRAILRCQSNGYELPADKYGQWKDVVIEFDPSGMRLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NDI5</accession>
    <name>A0A1M5NDI5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acyl-CoA thioester hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1347</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the 4-hydroxybenzoyl-CoA thioesterase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87568.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900040.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1347"/>
    <dbReference type="EnsemblBacteria" id="SHG87568">
        <property type="protein sequence ID" value="SHG87568"/>
        <property type="gene ID" value="SAMN05444003_1347"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016790">
        <property type="term" value="F:thiolester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014166">
        <property type="entry name" value="Tol-Pal_acyl-CoA_thioesterase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006684">
        <property type="entry name" value="YbgC/YbaW"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003230">
        <property type="entry name" value="YbgC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02799">
        <property type="entry name" value="thio_ybgC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00051">
        <property type="entry name" value="TIGR00051"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG87568.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="129" mass="14835" checksum="115A371A481A4388" modified="2017-03-15" version="1">MTHRLPVRVYYEDTDMGGIVYYANYLKYIERARSELVEEMGLNQNKMKDEDGLVFVVVRVEADYKAPARLDDRLEVVTEHHAASATRWVFDQDVQRDGKTIFRAKVTAVCMTVEGKPARLPAELRARLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NDU7</accession>
    <name>A0A1M5NDU7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 14">Crossover junction endodeoxyribonuclease RuvC</fullName>
            <ecNumber evidence="11 14">3.1.21.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13 14">Holliday junction nuclease RuvC</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="12 14">Holliday junction resolvase RuvC</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="primary">ruvC</name>
        <name evidence="16" type="ORF">SAMN05444003_1351</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9 14">Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10 14">
            <text>Endonucleolytic cleavage at a junction such as a reciprocal single-stranded crossover between two homologous DNA duplexes (Holliday junction).</text>
            <dbReference type="EC" id="3.1.21.10"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="14">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="14">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 14">Belongs to the RuvC family.</text>
    </comment>
    <dbReference type="EC" id="3.1.21.10" evidence="11 14"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87637.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1351"/>
    <dbReference type="EnsemblBacteria" id="SHG87637">
        <property type="protein sequence ID" value="SHG87637"/>
        <property type="gene ID" value="SAMN05444003_1351"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008821">
        <property type="term" value="F:crossover junction endodeoxyribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd16962">
        <property type="entry name" value="RuvC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00034">
        <property type="entry name" value="RuvC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020563">
        <property type="entry name" value="X-over_junc_endoDNase_Mg_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002176">
        <property type="entry name" value="X-over_junc_endoDNase_RuvC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30194">
        <property type="entry name" value="PTHR30194"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02075">
        <property type="entry name" value="RuvC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00696">
        <property type="entry name" value="RSOLVASERUVC"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00228">
        <property type="entry name" value="ruvC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01321">
        <property type="entry name" value="RUVC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 14" id="KW-0227">DNA damage</keyword>
    <keyword evidence="7 14" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="8 14" id="KW-0234">DNA repair</keyword>
    <keyword evidence="16" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5 14" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6 14" id="KW-0460">Magnesium</keyword>
    <keyword evidence="15" id="KW-0472">Membrane</keyword>
    <keyword evidence="14" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 14" id="KW-0540">Nuclease</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="15" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="15" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="72"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="131"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="203"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="206"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009518"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00014685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00025073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00029354"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00029488"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00030265"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00030973"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="SHG87637.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="233" mass="24840" checksum="E34FBA3A1FB31A1E" modified="2017-03-15" version="1">MTHMRFQNASLIGGERDKVLSFIGFFASKFGVIFGFWTVFASTRLDFVRVLCYRLINKTYEQGARMRVLGIDPGLRNMGWGVIDVSGSRIAHVANGVCHGVGVALADRLLALHEALTDVVARYEPDTAAVEQTFVNKDGAGTLKLGQARGVALLSLAQAGIRIGEYAPNSVKKAVVGVGHAEKTQIEHMVKLQLPGVKLLGPDAADALAIAICHAHHAQSAGRLDQALAKASA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NER4</accession>
    <name>A0A1M5NER4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Cell division coordinator CpoB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">cpoB</name>
        <name evidence="2" type="ORF">SAMN05444003_1341</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the CpoB family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900035.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1341"/>
    <dbReference type="EnsemblBacteria" id="SHG87463">
        <property type="protein sequence ID" value="SHG87463"/>
        <property type="gene ID" value="SAMN05444003_1341"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030288">
        <property type="term" value="C:outer membrane-bounded periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043093">
        <property type="term" value="P:FtsZ-dependent cytokinesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02066">
        <property type="entry name" value="CpoB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034706">
        <property type="entry name" value="CpoB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014162">
        <property type="entry name" value="CpoB_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13174">
        <property type="entry name" value="TPR_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02795">
        <property type="entry name" value="tol_pal_ybgF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="1" id="KW-0132">Cell division</keyword>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1" id="KW-0574">Periplasm</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013416822" description="Cell division coordinator CpoB" evidence="1">
        <location>
            <begin position="21"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="26"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02066"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG87463.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="273" mass="28940" checksum="022F2FA661F02744" modified="2017-03-15" version="1" precursor="true">MLKRFALISALMVAAPTYGAAQDETLADIRQQLSVLYVDIQRLKTELSASGTLTQGMTGNTPLDRLNSIEEQLQRLTSKTEELEYRVNRITVDGTNRVGDLEFRLCELEPNCDISQLGDTPTLGGVDNEATVPEAQASNETADPSLAVGERADFDSAQEALAAGDFRGALEKLTAFASAYPGSSLAPRASLIRGQALEALGEMPNAARAYLESFSGDPTGSVAPEALYKLGFALGALGQTQDACLTLGEVGIRFPGSPAVLEAQSSMRNFGCN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NFZ6</accession>
    <name>A0A1M5NFZ6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein N-acetyltransferase, RimJ/RimL family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1394</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88422.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900084.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1394"/>
    <dbReference type="EnsemblBacteria" id="SHG88422">
        <property type="protein sequence ID" value="SHG88422"/>
        <property type="gene ID" value="SAMN05444003_1394"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13302">
        <property type="entry name" value="Acetyltransf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="28"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG88422.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="236" mass="26693" checksum="5DB7C028A37F4061" modified="2017-03-15" version="1">MDRPLGFEVPEFEAVPEPLDLHLVGEWAELRPLDAVGDAPGLWSQMAGHDWLWDYLFEPAPQTETDFAGILEDLQAKTDKFAYVIRAKGQETPLGYACFWTTVTSMGSNEIGNVNLSPALQRTPIATEGFYLMTDWVFQNGYRRMEWKCNALNAPSRRAAQRLGFSFEGVLRNHMIVKGRNRDTAWFAITDQDWVGLREAYETWLSPENFDAAGVQRTSLADLTAPHLFTTDPTLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NK10</accession>
    <name>A0A1M5NK10_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Polysaccharide pyruvyl transferase family protein WcaK</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1463</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89861.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900145.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1463"/>
    <dbReference type="EnsemblBacteria" id="SHG89861">
        <property type="protein sequence ID" value="SHG89861"/>
        <property type="gene ID" value="SAMN05444003_1463"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007345">
        <property type="entry name" value="Polysacch_pyruvyl_Trfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04230">
        <property type="entry name" value="PS_pyruv_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PS_pyruv_trans" evidence="1">
        <location>
            <begin position="15"/>
            <end position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04230"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG89861.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="316" mass="35373" checksum="E33A0A85AB65C501" modified="2017-03-15" version="1">MRHLHLIDTSIGSDNVGDEIIMSEIKSHLLPLISDAYVTTSAGHDGLGVYSRDLAGKADLVLLLGTNALRHQYRVGKKYIWYVDRKDISAIEGKVVLFGVGANRDFEKIERRQLAFLQRVLAPNFVHAVRDETGARIVEACGLKSVNTSCPTLWAAPRVKVDPAKRPGAVCFTLTKHKADPLDQQMLDQMLDLYEDVYFWPQQPRDLEYLRTLNNQGRVKVLPPNLSAYDAFLSSTEVDVVGTRLHGSIRGLHHGRRVLAIAIDNRARDIGAEVSLPTLPRSEMHKLAERLNGDLTCELSLPKEKIDLFLDQFKSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NKG3</accession>
    <name>A0A1M5NKG3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Succinate dehydrogenase cytochrome b556 subunit</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">SAMN05444003_1469</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Membrane-anchoring subunit of succinate dehydrogenase (SDH).</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="13">
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </cofactor>
        <text evidence="13">The heme is bound between the two transmembrane subunits.</text>
    </comment>
    <comment type="subunit">
        <text evidence="12">Part of an enzyme complex containing four subunits: a flavoprotein, an iron-sulfur protein, plus two membrane-anchoring proteins, SdhC and SdhD. The complex can form homotrimers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the cytochrome b560 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89998.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1469"/>
    <dbReference type="EnsemblBacteria" id="SHG89998">
        <property type="protein sequence ID" value="SHG89998"/>
        <property type="gene ID" value="SAMN05444003_1469"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045281">
        <property type="term" value="C:succinate dehydrogenase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000104">
        <property type="term" value="F:succinate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1300.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034804">
        <property type="entry name" value="SQR/QFR_C/D"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018495">
        <property type="entry name" value="Succ_DH_cyt_bsu_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014314">
        <property type="entry name" value="Succ_DH_cytb556"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000701">
        <property type="entry name" value="SuccDH_FuR_B_TM-su"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10978">
        <property type="entry name" value="PTHR10978"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01127">
        <property type="entry name" value="Sdh_cyt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000178">
        <property type="entry name" value="SDH_cyt_b560"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81343">
        <property type="entry name" value="SSF81343"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02970">
        <property type="entry name" value="succ_dehyd_cytB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01001">
        <property type="entry name" value="SDH_CYT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0249">Electron transport</keyword>
    <keyword evidence="5 13" id="KW-0349">Heme</keyword>
    <keyword evidence="10 13" id="KW-0408">Iron</keyword>
    <keyword evidence="11 14" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 14" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 14" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="57"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="97"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="136"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="13">
        <location>
            <position position="113"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <note>ligand shared with second transmembrane subunit</note>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00020076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00025912"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRSR" id="PIRSR000178-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="SHG89998.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="156" mass="17281" checksum="BE4E028ACB87AC0F" modified="2017-03-15" version="1">MRDSALNIVQIGCDCSHAAERPATEGNRVMADVNRGNRPLSPHLTIYRPQMTSMTSIFVRITGNALIVAALMIVWWFAAAATGPEAFATADAFLRSWFGDLVLFLSVWAMWYHLLGGVRHLIWDTGRMLKVEQAETLGLVMIIGSVLMTIFTIIVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NKH9</accession>
    <name>A0A1M5NKH9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1474</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900154.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1474"/>
    <dbReference type="EnsemblBacteria" id="SHG90114">
        <property type="protein sequence ID" value="SHG90114"/>
        <property type="gene ID" value="SAMN05444003_1474"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012997014" evidence="1">
        <location>
            <begin position="26"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG90114.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="105" mass="11188" checksum="ADF0DD8FD79C939D" modified="2017-03-15" version="1">MNHQKLILWSMAFFGMLLTAQLAPAQTRNCGPHQAVVERLAAGFGESRQVIALDAANNVLEVFASTETGTWTITLTQPGGPTCIVAAGDHYQHVAEPLPNTDEGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NV64</accession>
    <name>A0A1M5NV64_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DUF218 domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1607</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93345.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900273.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1607"/>
    <dbReference type="EnsemblBacteria" id="SHG93345">
        <property type="protein sequence ID" value="SHG93345"/>
        <property type="gene ID" value="SAMN05444003_1607"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd06259">
        <property type="entry name" value="YdcF-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003848">
        <property type="entry name" value="DUF218"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02698">
        <property type="entry name" value="DUF218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF218" evidence="1">
        <location>
            <begin position="3"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02698"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG93345.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="161" mass="17648" checksum="0DF6312A0A2AEE87" modified="2017-03-15" version="1">MGVIVVLGAAVWPNGPSPTLRRRALHAAALWEQDQEAWVIGTGGVGKHSPAEATVIRDILVERGVAPEKIMQESHSTTTLENIKFALPMIRLLDAGKVTIVTDGYHAKRALMVAQHFDLDAQTSSPTLSTTGFADATRRHTRETFARLSYRAKLRNRPKQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NVP9</accession>
    <name>A0A1M5NVP9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cold-shock DNA-binding protein family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1619</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900282.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1619"/>
    <dbReference type="EnsemblBacteria" id="SHG93611">
        <property type="protein sequence ID" value="SHG93611"/>
        <property type="gene ID" value="SAMN05444003_1619"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04458">
        <property type="entry name" value="CSP_CDS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012156">
        <property type="entry name" value="Cold_shock_CspA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011129">
        <property type="entry name" value="CSD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019844">
        <property type="entry name" value="CSD_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002059">
        <property type="entry name" value="CSP_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00313">
        <property type="entry name" value="CSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002599">
        <property type="entry name" value="Cold_shock_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00050">
        <property type="entry name" value="COLDSHOCK"/>
    </dbReference>
    <dbReference type="SMART" id="SM00357">
        <property type="entry name" value="CSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00352">
        <property type="entry name" value="CSD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51857">
        <property type="entry name" value="CSD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CSD" evidence="3">
        <location>
            <begin position="1"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU000408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG93611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="69" mass="7338" checksum="13350747D7DAFEEC" modified="2017-03-15" version="1">MASGTVKWFNTTKGYGFIAPDGGGKDVFVHISAVERSGMTGLRDDQKVNYDLEAGRDGRESAVNISAAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PIL9</accession>
    <name>A0A1M5PIL9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1663</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH01626.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900486.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1663"/>
    <dbReference type="EnsemblBacteria" id="SHH01626">
        <property type="protein sequence ID" value="SHH01626"/>
        <property type="gene ID" value="SAMN05444003_1663"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH01626.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="315" mass="34340" checksum="3287B88B016055A8" modified="2017-03-15" version="1">MTDTTFGPNGWTPERLNDQSGKTYLITGANAGAGFQAARILLGKGAKVVMLNRSHEKSEAAVAELKTEFGQDTDVSFVRMDLSDLSSVRNAAEIVLETVPEIDALICNAAIAQVPTQKLTVDGFESQLGTNHYGHFLLCGMLFDRLEASGGRIVVAASLGYNMGIKTIQFDDMNWDKNYSANPVYSQSKLAQMMFAYELQDRLKSTERKVEVYVCHPGSSATSLISTSGGMITRILFQLMSLSPMVQSAEKGAFPEVMCATEEGLEQRAIYGPTGRMEFVGPVGKGTLNAHAYDKAVMTRLWDVSEKATGFSWKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PJ29</accession>
    <name>A0A1M5PJ29_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">50S ribosomal protein L25</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">General stress protein CTC</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rplY</name>
        <name evidence="6" type="synonym">ctc</name>
        <name evidence="9" type="ORF">SAMN05444003_1673</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA. Binds to the 5S rRNA independently of L5 and L18.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH01816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900495.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1673"/>
    <dbReference type="EnsemblBacteria" id="SHH01816">
        <property type="protein sequence ID" value="SHH01816"/>
        <property type="gene ID" value="SAMN05444003_1673"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008097">
        <property type="term" value="F:5S rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00495">
        <property type="entry name" value="Ribosomal_L25_TL5_CTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.120.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.240.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01334">
        <property type="entry name" value="Ribosomal_L25_CTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020056">
        <property type="entry name" value="Rbsml_L25/Gln-tRNA_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029751">
        <property type="entry name" value="Ribosomal_L25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011035">
        <property type="entry name" value="Ribosomal_L25/Gln-tRNA_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020057">
        <property type="entry name" value="Ribosomal_L25_b-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037121">
        <property type="entry name" value="Ribosomal_L25_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001021">
        <property type="entry name" value="Ribosomal_L25_long"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01386">
        <property type="entry name" value="Ribosomal_L25p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14693">
        <property type="entry name" value="Ribosomal_TL5_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50715">
        <property type="entry name" value="SSF50715"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00731">
        <property type="entry name" value="bL25_bact_ctc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 6 9" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 6" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="Ribosomal_TL5_C" evidence="8">
        <location>
            <begin position="105"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="187"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="7">
        <location>
            <begin position="197"/>
            <end position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01334"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF14693"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH01816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="218" mass="23261" checksum="31C55A04CDD2B725" modified="2017-03-15" version="1">MADKIPDLHATVRAGTGKGAARAARRAGDVPGIVYGGGADPLPINVNFDKLLTRLRKGGFMSTLYNLKVEGHDDVRVICRGVQRHVVKDLPTHIDLMRLKRTTRVKLMIPVNFLNQDTCPGIKKGGVLTVVRPEVELEVLAGDIPEAIDVELAEAQIGDTLSISSVTLPEGAKPTVDRDFVIANIQPPKNAIADDEDAAEEGGEEAAEGGAEEEAAEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PL23</accession>
    <name>A0A1M5PL23_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase</fullName>
            <ecNumber evidence="7">4.2.1.59</ecNumber>
            <ecNumber evidence="6">5.3.3.14</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="14">Beta-hydroxydecanoyl thioester dehydrase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="12">Trans-2-decenoyl-[acyl-carrier-protein] isomerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">SAMN05444003_1706</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a (3R)-hydroxyacyl-[ACP] = a (2E)-enoyl-[ACP] + H2O</text>
            <dbReference type="Rhea" id="RHEA:13097"/>
            <dbReference type="Rhea" id="RHEA-COMP:9925"/>
            <dbReference type="Rhea" id="RHEA-COMP:9945"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:78784"/>
            <dbReference type="ChEBI" id="CHEBI:78827"/>
            <dbReference type="EC" id="4.2.1.59"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Lipid metabolism; fatty acid biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the thioester dehydratase family. FabA subfamily.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.59" evidence="7"/>
    <dbReference type="EC" id="5.3.3.14" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02476.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900522.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1706"/>
    <dbReference type="EnsemblBacteria" id="SHH02476">
        <property type="protein sequence ID" value="SHH02476"/>
        <property type="gene ID" value="SAMN05444003_1706"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00094"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008659">
        <property type="term" value="F:(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008693">
        <property type="term" value="F:3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047451">
        <property type="term" value="F:3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004317">
        <property type="term" value="F:3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034017">
        <property type="term" value="F:trans-2-decenoyl-acyl-carrier-protein isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010083">
        <property type="entry name" value="FabA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013114">
        <property type="entry name" value="FabA_FabZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30272">
        <property type="entry name" value="PTHR30272"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30272:SF8">
        <property type="entry name" value="PTHR30272:SF8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07977">
        <property type="entry name" value="FabA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01749">
        <property type="entry name" value="fabA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="9" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="11" id="KW-0413">Isomerase</keyword>
    <keyword evidence="10" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="10" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00006714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00013167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00017810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00031656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00032302"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00032821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="SHH02476.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="169" mass="18628" checksum="7E51DA8D8495FC10" modified="2017-03-15" version="1">MAQYPTSFDKEGLLKCARGELFGEGNAQLPAPPMLMMDRITEISEDGGAHGKGHVLAEFDITPDLWFFDCHFPGNPIMPGCLGLDGLWQLTGFNLGWRGWQGRGYALGVGEVKLTGMVRPDRKMLTYKIDFTKAIQTRRLTMGVADGIVEADGEVIYQVKDMKVALSES</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PPR8</accession>
    <name>A0A1M5PPR8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP-dependent Clp protease adapter protein ClpS</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">clpS</name>
        <name evidence="3" type="ORF">SAMN05444003_1770</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Binds to the N-terminal domain of the chaperone ClpA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the ClpS family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03738.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900575.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1770"/>
    <dbReference type="EnsemblBacteria" id="SHH03738">
        <property type="protein sequence ID" value="SHH03738"/>
        <property type="gene ID" value="SAMN05444003_1770"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030163">
        <property type="term" value="P:protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00302">
        <property type="entry name" value="ClpS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022935">
        <property type="entry name" value="ClpS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003769">
        <property type="entry name" value="ClpS_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014719">
        <property type="entry name" value="Ribosomal_L7/12_C/ClpS-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33473">
        <property type="entry name" value="PTHR33473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02617">
        <property type="entry name" value="ClpS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54736">
        <property type="entry name" value="SSF54736"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ClpS" evidence="2">
        <location>
            <begin position="30"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00302"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH03738.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="113" mass="12856" checksum="38C6CC855FD23D9E" modified="2017-03-15" version="1">MLADFYMMSAASNDDDSDVGVALETKPKTKRPPMYKVLILNDDFTPMEFVVMVLERFFGMTHAQAFELMLTVHKKGVAVVGVYSHEIAETKVAQVMDFAQRHQHPLQCTMEKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PRX7</accession>
    <name>A0A1M5PRX7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1806</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900604.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH04441">
        <property type="protein sequence ID" value="SHH04441"/>
        <property type="gene ID" value="SAMN05444003_1806"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="50"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH04441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="70" mass="7772" checksum="D5AAF467C61F1D9C" modified="2017-03-15" version="1">MRYLLVLWMFLPSWAVAHPGHIIEASGHNHWIALGAIGAAALAALWAKHKEKQQDEAESDEADELEEEPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PRY8</accession>
    <name>A0A1M5PRY8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Recombination protein RecR</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">recR</name>
        <name evidence="9" type="ORF">SAMN05444003_1787</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the RecR family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04063.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900587.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1787"/>
    <dbReference type="EnsemblBacteria" id="SHH04063">
        <property type="protein sequence ID" value="SHH04063"/>
        <property type="gene ID" value="SAMN05444003_1787"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01025">
        <property type="entry name" value="TOPRIM_recR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00017">
        <property type="entry name" value="RecR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000093">
        <property type="entry name" value="DNA_Rcmb_RecR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023627">
        <property type="entry name" value="Rcmb_RecR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023628">
        <property type="entry name" value="Rcmb_RecR_C4-type_Zn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006171">
        <property type="entry name" value="TOPRIM_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034137">
        <property type="entry name" value="TOPRIM_RecR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30446">
        <property type="entry name" value="PTHR30446"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02132">
        <property type="entry name" value="RecR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13662">
        <property type="entry name" value="Toprim_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00493">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111304">
        <property type="entry name" value="SSF111304"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00615">
        <property type="entry name" value="recR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50880">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 7" id="KW-0227">DNA damage</keyword>
    <keyword evidence="5 7" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="6 7" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0862">Zinc</keyword>
    <keyword evidence="3 7" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="Toprim" evidence="8">
        <location>
            <begin position="81"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="C4-type" evidence="7">
        <location>
            <begin position="58"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00017"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH04063.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="197" mass="20982" checksum="40C6901F8DEA0B79" modified="2017-03-15" version="1">MAQGTEDLENLIALMAKLPGLGPRSARRAVLHLIKKRSLQLIPLAEAMHRVGATARECLSCGNIGTIDICDICANEKRQNGQICVVEDVADLWAMERANVFKGRYHVLGGTLSALDAIGPEELRIPKLIDRCQSEGVTEVILALGATIDGQTTAHYIADQLPGITVTSLAQGVPVGGELDYLDDGTITAALTARKSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PTB0</accession>
    <name>A0A1M5PTB0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 9">4-hydroxy-tetrahydrodipicolinate synthase</fullName>
            <shortName evidence="9">HTPA synthase</shortName>
            <ecNumber evidence="4 9">4.3.3.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">dapA</name>
        <name evidence="11" type="ORF">SAMN05444003_1834</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 9">Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>L-aspartate 4-semialdehyde + pyruvate = (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + H(+) + H2O</text>
            <dbReference type="Rhea" id="RHEA:34171"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:67139"/>
            <dbReference type="ChEBI" id="CHEBI:537519"/>
            <dbReference type="EC" id="4.3.3.7"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 9">Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; (S)-tetrahydrodipicolinate from L-aspartate: step 3/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Homotetramer; dimer of dimers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9 10">Belongs to the DapA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Was originally thought to be a dihydrodipicolinate synthase (DHDPS), catalyzing the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to dihydrodipicolinate (DHDP). However, it was shown in E.coli that the product of the enzymatic reaction is not dihydrodipicolinate but in fact (4S)-4-hydroxy-2,3,4,5-tetrahydro-(2S)-dipicolinic acid (HTPA), and that the consecutive dehydration reaction leading to DHDP is not spontaneous but catalyzed by DapB.</text>
    </comment>
    <dbReference type="EC" id="4.3.3.7" evidence="4 9"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05008.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900628.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1834"/>
    <dbReference type="EnsemblBacteria" id="SHH05008">
        <property type="protein sequence ID" value="SHH05008"/>
        <property type="gene ID" value="SAMN05444003_1834"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00017"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008840">
        <property type="term" value="F:4-hydroxy-tetrahydrodipicolinate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019877">
        <property type="term" value="P:diaminopimelate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00950">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00418">
        <property type="entry name" value="DapA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005263">
        <property type="entry name" value="DapA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002220">
        <property type="entry name" value="DapA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020625">
        <property type="entry name" value="Schiff_base-form_aldolases_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020624">
        <property type="entry name" value="Schiff_base-form_aldolases_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12128">
        <property type="entry name" value="PTHR12128"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00701">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001365">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00146">
        <property type="entry name" value="DHPICSNTHASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01130">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00674">
        <property type="entry name" value="dapA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00665">
        <property type="entry name" value="DHDPS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00666">
        <property type="entry name" value="DHDPS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 9" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 9" id="KW-0220">Diaminopimelate biosynthesis</keyword>
    <keyword evidence="9 10" id="KW-0456">Lyase</keyword>
    <keyword evidence="7 9" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 9" id="KW-0704">Schiff base</keyword>
    <feature type="active site" description="Proton donor/acceptor" evidence="9">
        <location>
            <position position="131"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with substrate" evidence="9">
        <location>
            <position position="159"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="44"/>
        </location>
        <ligand>
            <name>pyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="201"/>
        </location>
        <ligand>
            <name>pyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
        </ligand>
    </feature>
    <feature type="site" description="Part of a proton relay during catalysis" evidence="9">
        <location>
            <position position="43"/>
        </location>
    </feature>
    <feature type="site" description="Part of a proton relay during catalysis" evidence="9">
        <location>
            <position position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005120"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012086"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRNR" id="PIRNR001365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH05008.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="290" mass="30434" checksum="D57D09F6D18F5F84" modified="2017-03-15" version="1">MFKGSMPALVTPFSNGSIDIDALKKLVEWHIAQGSHGLVPVGTTGESPTLSHEEHDLVVETVVKQVAGRVPVVAGAGSNNTEETVRLVKAAKAAGADAALVVTPYYNKPTQRGLIAHFTAAADCGLPIIIYNIPGRSVVDMTPDTMAELSKHEMIVGVKDATGDLARVPQQRHRSGKDFIQLSGEDATALGFNAHGGVGCISVTANVAPALCAEFQDMTLSGDFAGALTLQDRLMPLHEAIFAEPGVCGAKYGLSLLGHCNEDVRSPLTPLTDETKAQIKDAMVFAGLIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PUD7</accession>
    <name>A0A1M5PUD7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 3">Diaminopimelate decarboxylase</fullName>
            <shortName evidence="2">DAP decarboxylase</shortName>
            <shortName evidence="2">DAPDC</shortName>
            <ecNumber evidence="2 3">4.1.1.20</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">lysA</name>
        <name evidence="6" type="ORF">SAMN05444003_1854</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Specifically catalyzes the decarboxylation of meso-diaminopimelate (meso-DAP) to L-lysine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 3">
            <text>H(+) + meso-2,6-diaminoheptanedioate = CO2 + L-lysine</text>
            <dbReference type="Rhea" id="RHEA:15101"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:32551"/>
            <dbReference type="ChEBI" id="CHEBI:57791"/>
            <dbReference type="EC" id="4.1.1.20"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 2 3">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2 3">Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; L-lysine from DL-2,6-diaminopimelate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the Orn/Lys/Arg decarboxylase class-II family. LysA subfamily.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.20" evidence="2 3"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05418.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1854"/>
    <dbReference type="EnsemblBacteria" id="SHH05418">
        <property type="protein sequence ID" value="SHH05418"/>
        <property type="gene ID" value="SAMN05444003_1854"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00027"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008836">
        <property type="term" value="F:diaminopimelate decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06828">
        <property type="entry name" value="PLPDE_III_DapDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.37.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02120">
        <property type="entry name" value="LysA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009006">
        <property type="entry name" value="Ala_racemase/Decarboxylase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002986">
        <property type="entry name" value="DAP_deCOOHase_LysA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022643">
        <property type="entry name" value="De-COase2_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022657">
        <property type="entry name" value="De-COase2_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022644">
        <property type="entry name" value="De-COase2_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022653">
        <property type="entry name" value="De-COase2_pyr-phos_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000183">
        <property type="entry name" value="Orn/DAP/Arg_de-COase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029066">
        <property type="entry name" value="PLP-binding_barrel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02784">
        <property type="entry name" value="Orn_Arg_deC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00278">
        <property type="entry name" value="Orn_DAP_Arg_deC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01181">
        <property type="entry name" value="DAPDCRBXLASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01179">
        <property type="entry name" value="ODADCRBXLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50621">
        <property type="entry name" value="SSF50621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51419">
        <property type="entry name" value="SSF51419"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01048">
        <property type="entry name" value="lysA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00878">
        <property type="entry name" value="ODR_DC_2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00879">
        <property type="entry name" value="ODR_DC_2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="2 3" id="KW-0210">Decarboxylase</keyword>
    <keyword evidence="2 3" id="KW-0456">Lyase</keyword>
    <keyword evidence="2 3" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Orn_DAP_Arg_deC" evidence="4">
        <location>
            <begin position="58"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="domain" description="Orn_Arg_deC_N" evidence="5">
        <location>
            <begin position="64"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="2">
        <location>
            <begin position="304"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="268"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="307"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="343"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="347"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="376"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="404"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="2">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02120"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02784"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH05418.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="450" mass="48886" checksum="4608D3DF338BDCAA" modified="2017-03-15" version="1">MRFEFGPNKGWCFDLICYVVRQKDAETVSLDHFLYRNGVLHAEDVPVAEIAAAVGTPFYVYSTATLQRHFKLFDDALEGLDHLVCFAMKSLSNQAVLKVLADAGAGMDVVSVGEYMRAKAAGVPGEKIVFSGVGKTAEEMRIALEGGIRQFNVESEPEMLVLSRVASELGVVTPITVRVNPDVDAKTHAKIATGKSENKFGIPISRAREVYAMAAELPGLKVIGIDVHIGSQLTELEPFELAYQKVAELTEVLRADGHEITRLDLGGGLGIPYARSNEAPPLPMDYGALIKRTVGHLGCEVEIEPGRLISGNAGLMVSKVIYVKEGEDRKFLIIDGAMNDLIRPAMYEAHHDIVPVVEPEVGAEPATYDIVGPVCESGDTFAKGRTMAAVESDDLIAFRSAGAYGAVMASEYNSRPLIPEVLVHGDQFAVIRPRPTFDEMIARDTLPEWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PVB6</accession>
    <name>A0A1M5PVB6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Type-4 uracil-DNA glycosylase</fullName>
            <ecNumber evidence="3">3.2.2.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_1865</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Hydrolyzes single-stranded DNA or mismatched double-stranded DNA and polynucleotides, releasing free uracil.</text>
            <dbReference type="EC" id="3.2.2.27"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the uracil-DNA glycosylase (UDG) superfamily. Type 4 (UDGa) family.</text>
    </comment>
    <dbReference type="EC" id="3.2.2.27" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05632.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900656.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1865"/>
    <dbReference type="EnsemblBacteria" id="SHH05632">
        <property type="protein sequence ID" value="SHH05632"/>
        <property type="gene ID" value="SAMN05444003_1865"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004844">
        <property type="term" value="F:uracil DNA N-glycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005273">
        <property type="entry name" value="Ura-DNA_glyco_family4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005122">
        <property type="entry name" value="Uracil-DNA_glycosylase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036895">
        <property type="entry name" value="Uracil-DNA_glycosylase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03167">
        <property type="entry name" value="UDG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00986">
        <property type="entry name" value="UDG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52141">
        <property type="entry name" value="SSF52141"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00758">
        <property type="entry name" value="UDG_fam4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="7" id="KW-0408">Iron</keyword>
    <keyword evidence="8" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UDG" evidence="10">
        <location>
            <begin position="100"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="31"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="9">
        <location>
            <begin position="44"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001400"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006521"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012030"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00019403"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM00986"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH05632.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="261" mass="28563" checksum="5A48D2FBD2508354" modified="2017-03-15" version="1">MESGNTYWNDRALLEWQIELGADEAIGDAPINRYDLDPAPAPKAEKPASAPTPPSQPTIADPVAEANATAKDAATLEDLATAMAAFDHCDLKRGARNFVFSDSRPDARVMIIGEAPGRQEDQVGKPFVGQAGQLLDKMLAAIDLDRRSDQPERAVYITNVLPWRLPQNRTPDATEIAMLLPFLERHIALANPDVLILMGNTPCQALLGRAGITRIRGAWTEVLGRPTLPMFHPAYLLRQTAAKREAWADLLSLKAKLKDLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PXI3</accession>
    <name>A0A1M5PXI3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1895</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06241.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900681.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH06241">
        <property type="protein sequence ID" value="SHH06241"/>
        <property type="gene ID" value="SAMN05444003_1895"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023772">
        <property type="entry name" value="DNA-bd_HTH_TetR-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039536">
        <property type="entry name" value="TetR_C_Proteobacteria"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14246">
        <property type="entry name" value="TetR_C_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01081">
        <property type="entry name" value="HTH_TETR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="11"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="34"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH06241.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="208" mass="23238" checksum="51DDC5BED684B84D" modified="2017-03-15" version="1">MPDGSVAVKKGRKFDQVLAGARDVFMSRGFEGASVDEIAKQAGVSKATLYSYFPDKKLLFMEVAKSECSKQAEEILAETSDDDPLEEVLLQIANRFVAFITSDFGQRVFRICVAESDRFPELGQAFYESGPMLMRGHMIELLHAAQDRGEVEIDDFQLASDQFAELCKADLHPRMVFSVSRTFTKEETSRVANGAVKTFLARYQAPRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PXW1</accession>
    <name>A0A1M5PXW1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Peptidoglycan glycosyltransferase</fullName>
            <ecNumber evidence="4">2.4.1.129</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">SAMN05444003_1910</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>[GlcNAc-(1-&gt;4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)](n)-di-trans,octa-cis-undecaprenyl diphosphate + beta-D-GlcNAc-(1-&gt;4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)-di-trans,octa-cis-undecaprenyl diphosphate = [GlcNAc-(1-&gt;4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)](n+1)-di-trans-octa-cis-undecaprenyl diphosphate + di-trans,octa-cis-undecaprenyl diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:23708"/>
            <dbReference type="Rhea" id="RHEA-COMP:9602"/>
            <dbReference type="Rhea" id="RHEA-COMP:9603"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:58405"/>
            <dbReference type="ChEBI" id="CHEBI:60033"/>
            <dbReference type="ChEBI" id="CHEBI:78435"/>
            <dbReference type="EC" id="2.4.1.129"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">In the C-terminal section; belongs to the transpeptidase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">In the N-terminal section; belongs to the glycosyltransferase 51 family.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.129" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06520.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900692.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1910"/>
    <dbReference type="EnsemblBacteria" id="SHH06520">
        <property type="protein sequence ID" value="SHH06520"/>
        <property type="gene ID" value="SAMN05444003_1910"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004180">
        <property type="term" value="F:carboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008658">
        <property type="term" value="F:penicillin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008955">
        <property type="term" value="F:peptidoglycan glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3810.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001264">
        <property type="entry name" value="Glyco_trans_51"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023346">
        <property type="entry name" value="Lysozyme-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036950">
        <property type="entry name" value="PBP_transglycosylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001460">
        <property type="entry name" value="PCN-bd_Tpept"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00912">
        <property type="entry name" value="Transgly"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00905">
        <property type="entry name" value="Transpeptidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53955">
        <property type="entry name" value="SSF53955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 15" id="KW-0121">Carboxypeptidase</keyword>
    <keyword evidence="7" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="12" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="6" id="KW-0645">Protease</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <keyword evidence="12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="12" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="44"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="domain" description="Transgly" evidence="14">
        <location>
            <begin position="113"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="domain" description="Transpeptidase" evidence="13">
        <location>
            <begin position="391"/>
            <end position="662"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="11">
        <location>
            <begin position="22"/>
            <end position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007739"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023988"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF00905"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF00912"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="SHH06520.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="710" mass="76989" checksum="0B4E2F4B649F1B3C" modified="2017-03-15" version="1">MSGSRKKRGPLVAEKRYQKQPPKKKSPPAKRPVKRNQPAKKKRGIIGWLLAPFFWVGGLIWRFTWRIGLVVTVLIAVGVFYFAAQLPPIEEIVDGRVRGSVTLTDRDGEVFAVRGDQYGGFITTDTVSPHLKNAVIASEDKRFYWHPGVDPRGIASAVRINLREGRGPLSGNGGSTLTQQTAKLLCLGVAYDPNTWENEAAYEADCRRTTLWRKVKEAVYAMAMEFRYTKDEILTIYLNRAYLGNGNRGFESAAQRFFGKSAAELTPQEAAMLSGILPAPSRLAPTTNLERAQGRGDLVLGLMEAQGYLSPEEAAQARANPATLTESATARVGGYFADWVMDNGPEFFTRDTTEDVIIQTTLDQDIQAAAEEALLWVFEEKVSEDSVAEAAVIVMSPDGAVRGMVGGRNVRAVGAFNRATQARRQTGSTFKPFIYGTALELGFSPLDLVDDSPITINVPGSGDWEPQNYDREFKGPVTLDQALAESRNIPAVVMNEEVGREIVRNVAQGFGIESDLAAGPAMALGVSESTLVEMTGAFAGILNGGSSVTPYGLNSLSVRGDAEPLMDNSTAGIGERVIREEAARQLIWMMMNVVENGTGARAKIDGWQVAAKTGTTQSARDAWFIGFTGDYVVGVWMGNDDNSPLKGTTGGGLPADIFRETMVRVIDGQQPVALPYSVPVPSTSSRVISRSEFQGSDEIRGILNDILASQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q300</accession>
    <name>A0A1M5Q300_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Autoinducer binding domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1982</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07863.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1982"/>
    <dbReference type="EnsemblBacteria" id="SHH07863">
        <property type="protein sequence ID" value="SHH07863"/>
        <property type="gene ID" value="SAMN05444003_1982"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005143">
        <property type="entry name" value="TF_LuxR_autoind-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036693">
        <property type="entry name" value="TF_LuxR_autoind-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03472">
        <property type="entry name" value="Autoind_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75516">
        <property type="entry name" value="SSF75516"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Autoind_bind" evidence="1">
        <location>
            <begin position="39"/>
            <end position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH07863.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="153" mass="17760" checksum="805D01E5F69D5EF6" modified="2017-03-15" version="1">MDVDHKNLGGLIPTFEEDRQILLGMCDMGFAVALDIHWNGPVYSHNEYPEKWAKLYFDKNFFVLDPLFYWTVVKTGHIRWSEVSFPDPRGVLKMAAEHGLKYGCTFSMKESNRRHLLSISRSDREFTDPEISEAEKVFESWTAASINIRPSKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q453</accession>
    <name>A0A1M5Q453_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2021</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08591.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH08591">
        <property type="protein sequence ID" value="SHH08591"/>
        <property type="gene ID" value="SAMN05444003_2021"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH08591.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="97" mass="11307" checksum="DB8FBCBE64535694" modified="2017-03-15" version="1">MAPSTEKQMSINIAGVIKRRVFNVFKFILKRSLKWTLVKSPYLILPLIERLFPKLKHHLNLGLIAYPEHPLIALDFRLRPHRLPRIVAQLNGRFTVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q694</accession>
    <name>A0A1M5Q694_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="17">Antenna pigment protein beta chain</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="21" type="ORF">SAMN05444003_2064</name>
    </gene>
    <organism evidence="21 22">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="21 22" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="21 22">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">The core complex is formed by different alpha and beta chains, binding bacteriochlorophyll molecules, and arranged most probably in tetrameric structures disposed around the reaction center. The non-pigmented gamma chains may constitute additional components.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Single-pass type II membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Membrane</location>
            <topology evidence="3">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the antenna complex beta subunit family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09420.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900820.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2064"/>
    <dbReference type="EnsemblBacteria" id="SHH09420">
        <property type="protein sequence ID" value="SHH09420"/>
        <property type="gene ID" value="SAMN05444003_2064"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030077">
        <property type="term" value="C:plasma membrane light-harvesting complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042314">
        <property type="term" value="F:bacteriochlorophyll binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045156">
        <property type="term" value="F:electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019684">
        <property type="term" value="P:photosynthesis, light reaction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.250">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000066">
        <property type="entry name" value="Antenna_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023623">
        <property type="entry name" value="Antenna_beta_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023624">
        <property type="entry name" value="Antenna_beta_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002362">
        <property type="entry name" value="LHB-1/5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035889">
        <property type="entry name" value="Light-harvesting_complex"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00556">
        <property type="entry name" value="LHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002900">
        <property type="entry name" value="Antenna_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00674">
        <property type="entry name" value="LIGHTHARVSTB"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56918">
        <property type="entry name" value="SSF56918"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00969">
        <property type="entry name" value="ANTENNA_COMP_BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0042">Antenna complex</keyword>
    <keyword evidence="12" id="KW-0076">Bacteriochlorophyll</keyword>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0148">Chlorophyll</keyword>
    <keyword evidence="14" id="KW-0157">Chromophore</keyword>
    <keyword evidence="16" id="KW-0437">Light-harvesting polypeptide</keyword>
    <keyword evidence="11 18" id="KW-0460">Magnesium</keyword>
    <keyword evidence="15 19" id="KW-0472">Membrane</keyword>
    <keyword evidence="10 18" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="22" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 19" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="13 19" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="20"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="domain" description="LHC" evidence="20">
        <location>
            <begin position="14"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="18">
        <location>
            <position position="21"/>
        </location>
        <ligand>
            <name>a bacteriochlorophyll</name>
            <dbReference type="ChEBI" id="CHEBI:38201"/>
        </ligand>
        <ligandPart>
            <name>Mg</name>
            <dbReference type="ChEBI" id="CHEBI:25107"/>
        </ligandPart>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="18">
        <location>
            <position position="39"/>
        </location>
        <ligand>
            <name>a bacteriochlorophyll</name>
            <dbReference type="ChEBI" id="CHEBI:38201"/>
        </ligand>
        <ligandPart>
            <name>Mg</name>
            <dbReference type="ChEBI" id="CHEBI:25107"/>
        </ligandPart>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002455"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004249"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011367"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022549"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00022991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00023243"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00030677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="PIRSR" id="PIRSR002900-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="20">
        <source>
            <dbReference type="Pfam" id="PF00556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="EMBL" id="SHH09420.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="22">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="51" mass="5789" checksum="AFCAD9D6D806B00A" modified="2017-03-15" version="1">MADNSDLSFTGLSDEQAQELHAVYMSGLWVFVMIAVVAHVLTYIKLPWFGW</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q6A3</accession>
    <name>A0A1M5Q6A3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE</fullName>
            <ecNumber evidence="6">2.1.1.163</ecNumber>
            <ecNumber evidence="6">2.1.1.201</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">2-methoxy-6-polyprenyl-1,4-benzoquinol methylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Demethylmenaquinone methyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">ubiE</name>
        <name evidence="7" type="ORF">SAMN05444003_2046</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>a 2-demethylmenaquinol + S-adenosyl-L-methionine = a menaquinol + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42640"/>
            <dbReference type="Rhea" id="RHEA-COMP:9539"/>
            <dbReference type="Rhea" id="RHEA-COMP:9563"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:18151"/>
            <dbReference type="ChEBI" id="CHEBI:55437"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="EC" id="2.1.1.163"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>a 2-methoxy-6-all-trans-polyprenyl-1,4-benzoquinol + S-adenosyl-L-methionine = a 6-methoxy-3-methyl-2-all-trans-polyprenyl-1,4-benzoquinol + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:28286"/>
            <dbReference type="Rhea" id="RHEA-COMP:10858"/>
            <dbReference type="Rhea" id="RHEA-COMP:10859"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:84166"/>
            <dbReference type="ChEBI" id="CHEBI:84167"/>
            <dbReference type="EC" id="2.1.1.201"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="6">Cofactor biosynthesis; ubiquinone biosynthesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="6">Quinol/quinone metabolism; menaquinone biosynthesis; menaquinol from 1,4-dihydroxy-2-naphthoate: step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the class I-like SAM-binding methyltransferase superfamily. MenG/UbiE family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.163" evidence="6"/>
    <dbReference type="EC" id="2.1.1.201" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09063.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900804.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2046"/>
    <dbReference type="EnsemblBacteria" id="SHH09063">
        <property type="protein sequence ID" value="SHH09063"/>
        <property type="gene ID" value="SAMN05444003_2046"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00079">
        <property type="reaction ID" value="UER00169"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00232"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043333">
        <property type="term" value="F:2-octaprenyl-6-methoxy-1,4-benzoquinone methylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043770">
        <property type="term" value="F:demethylmenaquinone methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102094">
        <property type="term" value="F:S-adenosylmethionine:2-demethylmenaquinol methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102955">
        <property type="term" value="F:S-adenosylmethionine:2-demethylmenaquinol-7 methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102027">
        <property type="term" value="F:S-adenosylmethionine:2-demethylquinol-8 methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009060">
        <property type="term" value="P:aerobic respiration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009234">
        <property type="term" value="P:menaquinone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006744">
        <property type="term" value="P:ubiquinone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01813">
        <property type="entry name" value="MenG_UbiE_methyltr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004033">
        <property type="entry name" value="UbiE/COQ5_MeTrFase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023576">
        <property type="entry name" value="UbiE/COQ5_MeTrFase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01209">
        <property type="entry name" value="Ubie_methyltran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01934">
        <property type="entry name" value="MenG_MenH_UbiE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51608">
        <property type="entry name" value="SAM_MT_UBIE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01183">
        <property type="entry name" value="UBIE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01184">
        <property type="entry name" value="UBIE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 6" id="KW-0474">Menaquinone biosynthesis</keyword>
    <keyword evidence="2 6 7" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 6 7" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 6" id="KW-0831">Ubiquinone biosynthesis</keyword>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="6">
        <location>
            <begin position="122"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="74"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="94"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="139"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022428"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022688"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01813"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH09063.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="250" mass="27892" checksum="F77C4655C6C2C28F" modified="2017-03-15" version="1">MADKTQSTTHFGFETVPEGEKAGRVQGVFSSVANKYDIMNDVMSVGIHRIWKDAMMDWLAPRPGQKLLDVAGGTGDISFRFLKRAGSGHAIVLDLTEPMLVEGRQRAEAASMADSLDWVVGDAMALPFEDNTFDVYTISFGIRNVTRPQEALNEAYRVLKPGGRLMVLEFSQLPNDMMQKAYDLYSFNVIPRMGKLIANDADSYQYLVESIRKFPDQETFLGMVKTAGFENAKYRNLSMGIAALHSGWKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q8V0</accession>
    <name>A0A1M5Q8V0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2110</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH10296.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH10296">
        <property type="protein sequence ID" value="SHH10296"/>
        <property type="gene ID" value="SAMN05444003_2110"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH10296.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="85" mass="9106" checksum="011B5B0CE66D6C29" modified="2017-03-15" version="1" fragment="single">SVSSPLLGGCDVPETLSYQITLNCPISADVRQIAKCVTECVTIKDTSQQIDLSLSITENDGAQYAEFGVSASCHPQETDQVTDIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QI28</accession>
    <name>A0A1M5QI28_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2135</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH13777.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900940.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2135"/>
    <dbReference type="EnsemblBacteria" id="SHH13777">
        <property type="protein sequence ID" value="SHH13777"/>
        <property type="gene ID" value="SAMN05444003_2135"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="105"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="112"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH13777.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="285" mass="32002" checksum="CE4C0D89039EAFAB" modified="2017-03-15" version="1">MSRHSFDPEIAGRVGLNAAVIFQNITFWIEKNQANRRNLRDGRYWTYNSISAFGELFPYLSEKQIRTALEKLVSAELIIKGNFSDDRYDRTCWYALGNSICPNGQIDPTERENDAFAPEGKPSAREGKSYKNRYKPYQKPNPSHAKAAVEDDVSEKILSAYPEDRVRGKAVCISQIRQALADGVDAKDLEDAVRAYASESEGFTRSKVCFSDNWFTSGRWLKYLHDVEEAREAGKAKEAELLKGLADWVTDHHPLCRHITPGQVTALLAANLVSPAEIEAAGLRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QKY3</accession>
    <name>A0A1M5QKY3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA-binding transcriptional regulator, MarR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2169</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14469.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900987.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2169"/>
    <dbReference type="EnsemblBacteria" id="SHH14469">
        <property type="protein sequence ID" value="SHH14469"/>
        <property type="gene ID" value="SAMN05444003_2169"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01047">
        <property type="entry name" value="MarR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00598">
        <property type="entry name" value="HTHMARR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="13"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH14469.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="158" mass="17660" checksum="D8FA68FCA4B9BC9C" modified="2017-03-15" version="1">MTSPKPRTWKATPNTATRIVAGLFRSRNYVWNNDHKVAEQHGITWTQFLILRALRFTNEALTLTPTQLYEAAQASSSGTAKMLAGLAEMGLIERFPNPDDARSTLARLTEKGADLTEQIVDELIEMNTALFDGVLTTEEREQLADLLGKLSAELRERV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QLI5</accession>
    <name>A0A1M5QLI5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Parvulin-like PPIase</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Peptidyl-prolyl cis-trans isomerase plp</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Rotamase plp</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_2175</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PpiC/parvulin rotamase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14590.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900998.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2175"/>
    <dbReference type="EnsemblBacteria" id="SHH14590">
        <property type="protein sequence ID" value="SHH14590"/>
        <property type="gene ID" value="SAMN05444003_2175"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046357">
        <property type="entry name" value="PPIase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000297">
        <property type="entry name" value="PPIase_PpiC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023058">
        <property type="entry name" value="PPIase_PpiC_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027304">
        <property type="entry name" value="Trigger_fact/SurA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00639">
        <property type="entry name" value="Rotamase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109998">
        <property type="entry name" value="SSF109998"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01096">
        <property type="entry name" value="PPIC_PPIASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50198">
        <property type="entry name" value="PPIC_PPIASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0697">Rotamase</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012409456" description="Parvulin-like PPIase" evidence="6">
        <location>
            <begin position="24"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="domain" description="PpiC" evidence="7">
        <location>
            <begin position="131"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00018370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00030642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00031484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH14590.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="278" mass="30194" checksum="75C0A4402080043C" modified="2017-03-15" version="1">MLKHITVLGASAFALITATTAVAQDADTVVATVGDVEITLGEMIIARSQLPQQYQQFPPEILFNGLLDQLIQQQLLSNDLEDAPKRLELSILNERRNLMAAEVINEISEQVLTEEALLAAYEARYADAEPVLEWNASHLLVDTEEEAIAAKQRVEGGEVFADVAREVSTGPSGPSGGELGWFGTGRMVPAFESAAAALEVGEVSDPVQTQFGWHVIILNDTRELPPVTFEQAQGELANEIREAAIQARLAELEAQYDVVKPEAGAFDPNLLTNFDLLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QMB2</accession>
    <name>A0A1M5QMB2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6 8">Proline iminopeptidase</fullName>
            <shortName evidence="6">PIP</shortName>
            <ecNumber evidence="4 6 8">3.4.11.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Prolyl aminopeptidase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_2190</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 6 8">
            <text>Release of N-terminal proline from a peptide.</text>
            <dbReference type="EC" id="3.4.11.5"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 6 8">Belongs to the peptidase S33 family.</text>
    </comment>
    <dbReference type="EC" id="3.4.11.5" evidence="4 6 8"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901022.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2190"/>
    <dbReference type="EnsemblBacteria" id="SHH14890">
        <property type="protein sequence ID" value="SHH14890"/>
        <property type="gene ID" value="SAMN05444003_2190"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004177">
        <property type="term" value="F:aminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002410">
        <property type="entry name" value="Peptidase_S33"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005944">
        <property type="entry name" value="Pro_iminopeptidase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43722">
        <property type="entry name" value="PTHR43722"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006431">
        <property type="entry name" value="Pept_S33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00793">
        <property type="entry name" value="PROAMNOPTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01249">
        <property type="entry name" value="pro_imino_pep_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6 8" id="KW-0645">Protease</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="9">
        <location>
            <begin position="46"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="7">
        <location>
            <position position="120"/>
        </location>
    </feature>
    <feature type="active site" evidence="7">
        <location>
            <position position="274"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="7">
        <location>
            <position position="302"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001585"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010088"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012568"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00021843"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR006431"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR006431-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003421"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH14890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="329" mass="36963" checksum="CDF702D839AB0903" modified="2017-03-15" version="1">MDKVLSQKSAISYLYPPVEPFDQRMLDVGDGHRVYVEQCGNPDGIPVVVLHGGPGGGCSPAMRRYFDPEVFRVVLFDQRGCGRSRPHASVENNTTWHLVRDIELIRETLGIARWIVFGGSWGATLSLIYAQEHPDRAAALALRGVFLMRQEELDWFYGGGAGRFWPDLWKQFTVGIPKDEHNDFIAAYHRRLFSGDLTTETRYARAWSSWENALASIDSDGVTGESPADYARAFARLENHYFVNSGFLDESQQVLARMDRIAHIPGVIVQGRFDMICPPQSAYDLAQKWPEARLTMVGRAGHALSERGISAELVRSMDTFATRAKILKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QN22</accession>
    <name>A0A1M5QN22_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 10">Heme chaperone HemW</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">SAMN05444003_2219</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the anaerobic coproporphyrinogen-III oxidase family. HemW subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15504.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901073.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2219"/>
    <dbReference type="EnsemblBacteria" id="SHH15504">
        <property type="protein sequence ID" value="SHH15504"/>
        <property type="gene ID" value="SAMN05444003_2219"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004109">
        <property type="term" value="F:coproporphyrinogen oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006779">
        <property type="term" value="P:porphyrin-containing compound biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034505">
        <property type="entry name" value="Coproporphyrinogen-III_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010723">
        <property type="entry name" value="HemN_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004559">
        <property type="entry name" value="HemW-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13932">
        <property type="entry name" value="PTHR13932"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06969">
        <property type="entry name" value="HemN_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00562">
        <property type="entry name" value="HemN-like__clustered_with_heat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00539">
        <property type="entry name" value="hemN_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="9 10" id="KW-0143">Chaperone</keyword>
    <keyword evidence="10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 10" id="KW-0349">Heme</keyword>
    <keyword evidence="7 10" id="KW-0408">Iron</keyword>
    <keyword evidence="8 10" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="6 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 10" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="11">
        <location>
            <begin position="4"/>
            <end position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006100"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00017228"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU364116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHH15504.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="380" mass="42402" checksum="F6F9E99CF9038C73" modified="2017-03-15" version="1">MTENWQRGGFGLYVHWPFCEAKCPYCDFNSYVSQSIDHDRWKAAYLSELNRVGSETPDRVLTSIFFGGGTPSLMEPSVVEEIIKTAGKLWPFTNDIEITIEANPSSVEAERFKGFQAGGVNRVSLGVQALNDTDLKALGRLHSVKEAREAIEIAQNTFERASFDLIYARQNQTLSQWESELSEAVAIGTDHLSLYQLTIEQGTAFGDRHKRGMLRGLPSEDLGADMYFATQDICEAAGLPAYETSNHARTGEESRHNQIYWRSGDYVGIGPGAHGRVTLNQMRLSTESFLAPGEWLKSVEDLNSGESERDPLDLGDQKDEFLLMGLRMSEGVDLSVFDFSDKYNEINNLSELGLVDKKDDTLRVTPQGRPLLNSILARLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QQS1</accession>
    <name>A0A1M5QQS1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF1996 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2269</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16464.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH16464">
        <property type="protein sequence ID" value="SHH16464"/>
        <property type="gene ID" value="SAMN05444003_2269"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018535">
        <property type="entry name" value="DUF1996"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09362">
        <property type="entry name" value="DUF1996"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012702911" description="DUF1996 domain-containing protein" evidence="1">
        <location>
            <begin position="27"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="domain" description="DUF1996" evidence="2">
        <location>
            <begin position="62"/>
            <end position="297"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09362"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH16464.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="333" mass="36379" checksum="99140279CB946D52" modified="2017-03-15" version="1">MILPSKIATFVMLASISLTLTPNSSAAQNQGVMNADDVTDFREDGSGAFRTHCIESHISFDDPLVSPGQPGAAHQHVFFGNSIVDAYTTPQSLFQAEETTCDGGTLNSSAYWVPTLFDTNGERVRFIDPLFYYKTGYHLPAKSIQAPPRGLRMIAGNADAQTVQSARVVKFRCSSWMSDKIWFDPGDPLDHVPYLPDCPADDVLEIRIVFPQCWDGENLSSANFQDHMTYPSAATPPVTGTGSCPASHPVAIPEISYNFAVHVDPDRGPTNTWSLSSDMQKTPKPGASLHADWMNGWDPEIMERIVENCLNPGRECGVGLLGDGEMLRPVILD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QUV1</accession>
    <name>A0A1M5QUV1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">EamA domain-containing membrane protein RarD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2309</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
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        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
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                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17323.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901211.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2309"/>
    <dbReference type="EnsemblBacteria" id="SHH17323">
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        <property type="gene ID" value="SAMN05444003_2309"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
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    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="42"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="74"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="100"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="126"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="152"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="179"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="220"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="249"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="273"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="16"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH17323.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="296" mass="31359" checksum="F0861EFB416235DA" modified="2017-03-15" version="1">MSPIAHLQTSTKAASIGIVLGGALWGLFWIPLRAFEDIGFEGAYPGFVFYIIALLVFLPLTLAFRTPITSKRDLALAGLLTGTAFSFYGTSIILTDVVRALLFFYLTPIWGTAIGILFLGERLTAARVIAILLAFAGLFAVIGFGSRDAINLGDLLAFTSGILWTIGSYKIYQMKDTPAVQLCTGFLTGAIVATAALIAFGGDALRGTDPFPALAPLWPYLLATALYALPMILLTIWPPKVLTPGRIGILLMSEVVVGFISVALFAGDPLGPFEIIGAILIVAATSLEILGNKDAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QV26</accession>
    <name>A0A1M5QV26_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2341</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
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        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
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                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18017.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH18017">
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        <property type="gene ID" value="SAMN05444003_2341"/>
    </dbReference>
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    </dbReference>
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        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
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    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="28"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH18017.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="93" mass="9816" checksum="E1F308DC87405F3C" modified="2017-03-15" version="1">MGGGRKEDPVGGPFQTSDFIMLNSAARYVAIGVAMVLGIWVFTTFGSIITALCTRLTMDLLDLFSGLQTGLITDAVGDAQSFALFLIPNTLAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QXS3</accession>
    <name>A0A1M5QXS3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2386</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH18902">
        <property type="protein sequence ID" value="SHH18902"/>
        <property type="gene ID" value="SAMN05444003_2386"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH18902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="46" mass="4868" checksum="2890E6545458D72C" modified="2017-03-15" version="1">MSLTAIEQYMLELINRARLNPAAPPLKSLSLKIARFGSAPATGLAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-06-02" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QYI1</accession>
    <name>A0A1M5QYI1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Predicted dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2388</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18938.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901341.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH18938">
        <property type="protein sequence ID" value="SHH18938"/>
        <property type="gene ID" value="SAMN05444003_2388"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004104">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000683">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01408">
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02894">
        <property type="entry name" value="GFO_IDH_MocA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
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        <location>
            <begin position="4"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="domain" description="GFO_IDH_MocA_C" evidence="2">
        <location>
            <begin position="146"/>
            <end position="376"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH18938.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="377" mass="40781" checksum="B974D0D6F6622BFF" modified="2017-03-15" version="1">MARIRLGMVGGGNDAFIGAVHRIASRIDDRFELVAGALSSTPEKAIASGQALGLDPDRTYANFTDMAKREARLKNGIEAVAIVTPNHVHYPASREFLKRNIHVICDKPLTSTMADAKKLVAAVEKSDALFVLTHNYTGYPMMRQARQMVADGDLGKIRLVQVEYPQDWLTEAAEDDGVKQAEWRTDPARSGAGGCVGDIGTHAYNLAGFVTGLRLEELAADLHSFVPGRLLDDNVNVMLRYEGGARGMLWSSQVAPGNENGLKLRVYGEKGGIEWTQADPNYLWFTPFGEPKRLITRGGAGSNAASQKGTRIPPGHPEGYLEGFANIYSEAADAIEAARAGKSSDALYPTVEDGLDGMKFIQACVASSKRNSAWLKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R1R3</accession>
    <name>A0A1M5R1R3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative tricarboxylic transport membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2447</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH20101.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901421.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2447"/>
    <dbReference type="EnsemblBacteria" id="SHH20101">
        <property type="protein sequence ID" value="SHH20101"/>
        <property type="gene ID" value="SAMN05444003_2447"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002823">
        <property type="entry name" value="DUF112_TM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01970">
        <property type="entry name" value="TctA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="45"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="75"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="107"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="147"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="170"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="200"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="258"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="326"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="359"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="393"/>
            <end position="411"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="418"/>
            <end position="434"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="474"/>
            <end position="494"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH20101.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="503" mass="52582" checksum="F85E44CB647712C3" modified="2017-03-15" version="1">MEVLSFLTDGVLLALAPTNLFLIVIGVTVGLFIGAMPGLGSVNGVAILLPITFLVPPGSAIIFLAAIYYGAMYGGAISSVALGIPGASTAVATTFDGRPLALQGRASLALVTAALASFVGGTVANVFFTLFAPILASLALSFGPPEIFALMLLAFATFVGLGGDDIPKTIFSICFGLVLATVGFDTISGEPRLVLFDIPGFLRGIGFIVLAIGVYGIGEMLWTIEQTRGEITTTNPKMTAKGMMSDTKEAVRRGWKGTWIGSLIGFFVGILPAAGATPGSLMSYGVAKMVSNTPQEFGNGSPNGVAAPEAANNSASTGSMLPMLTLGIPGSPTTAILLGGMVIWGLTPGPRLFVDESEFVWGLIGSFYISNIAALLINLAFIPLFIWMLRMPFTILAPLIFVLSIVGGFAASRSMHDLWLIVIFGIAAFFMRKFDYPLAPAVLAIVLGPIAEPTLRQSLLLSSGDPMIFFTRPIAGPITIIAIILILLPAIKLIRGSRRVEEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RBY0</accession>
    <name>A0A1M5RBY0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">2-methylcitrate dehydratase PrpD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2498</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PrpD family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901582.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2498"/>
    <dbReference type="EnsemblBacteria" id="SHH23771">
        <property type="protein sequence ID" value="SHH23771"/>
        <property type="gene ID" value="SAMN05444003_2498"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.4100.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036148">
        <property type="entry name" value="MmgE/PrpD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042183">
        <property type="entry name" value="MmgE/PrpD_sf_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042188">
        <property type="entry name" value="MmgE/PrpD_sf_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005656">
        <property type="entry name" value="MmgE_PrpD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045337">
        <property type="entry name" value="MmgE_PrpD_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045336">
        <property type="entry name" value="MmgE_PrpD_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16943">
        <property type="entry name" value="PTHR16943"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03972">
        <property type="entry name" value="MmgE_PrpD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19305">
        <property type="entry name" value="MmgE_PrpD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103378">
        <property type="entry name" value="SSF103378"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MmgE_PrpD" evidence="2">
        <location>
            <begin position="5"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="domain" description="MmgE_PrpD_C" evidence="3">
        <location>
            <begin position="263"/>
            <end position="426"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03972"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF19305"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH23771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="455" mass="48592" checksum="1E7C8FA5DC4DC126" modified="2017-03-15" version="1">MSVTFQNFAADVSFDDLPSDLVHLLRRSLLDTMGVAAIGASTQMAASARRGAEAMFGVGTSGAARILMNGALVSPAGAAMAGGFTVDSIDAHDGTTPNKGHAGSAVFPGVFAVADSLRRSGQSINGRDLAVWLAIAYEVSYRTGQVQHATCPDYHTSGSWTAVGVAVAAARMLGLSPTQIREAAGIAEYHGPRSQMMRCIDHPTNVRDGVGWGAPTGVTATYLARDGFTGAPALTCEGEEAAPYWDGLGQNWLTLAHTHYKQYPCCRWAHASMDAAKELMDENALSHDDVAQAKIRTFHYATRLAGHEPKTLDELAYSIAFPVAAIIVRGQMGPDELTPETLCDPDILRVSHATELIDDPELTERSVAQRWAQVSLVLKDGRRLDAPERTPRGDLDAPLSDQEIGAKFHLLANKHLGTPRAERLEELCFGFADLDAAGVDELFELCLTPINAPTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RE68</accession>
    <name>A0A1M5RE68_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized conserved protein, heparinase superfamily</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2525</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24319.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2525"/>
    <dbReference type="EnsemblBacteria" id="SHH24319">
        <property type="protein sequence ID" value="SHH24319"/>
        <property type="gene ID" value="SAMN05444003_2525"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.50.10.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008929">
        <property type="entry name" value="Chondroitin_lyas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012480">
        <property type="entry name" value="Hepar_II_III"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07940">
        <property type="entry name" value="Hepar_II_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH24319.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="584" mass="63654" checksum="7A19909264AE7735" modified="2017-03-15" version="1">MTQPQTWRARRTAYMHRVHARRAARAKPATAFVQQPEPRTIGRVARGRQLLAGNFLFAGTLTEAPSASLWDAGNRSALVLEEMHGCTWLDDLAAIADSRARAKAQAWVQDWITRYGNGKSDGWTPDLVGRRLIRWINHGLFLLRGADTEASLRFFRSLGQQTIFLSRRWQTATPGLARFEAVTGMIYAGLSLEGMERHVEPAIAALAKDCETEIDARGGIATRNPEALLEVFTLLNWAVLAISESDMTPPQSVHDAIARIAPTLRALRHSDGGLARFHGGGRGMDGRLDNALALSGNKDLPSEGLHMGFARLSPGRLSLVVDAAPPPQGEASVNGHASTLSFELTSGRRSLIVNCGSGASFGPEWRRAGRATPSHSTLGLEGYSSSRLGKPSRILNSGQELLIDRPKRVQCEFSKLGDGERIELSHNGYQLTHGLTHARTIDITTDGRGLVGEDLITTLSEDDEDRFAKAVDQSNLLGVPFSIRFHLHPDVDAVLDLGGAAISLALKSGEIWVFRHDGSAELTLEPSVYLENGRLKPRATKQMVLSGRTMNYATRVRWSLAKAQDTPDVVRDLAVAEEPAALDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RGJ5</accession>
    <name>A0A1M5RGJ5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, LacI family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2571</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25270.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901900.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2571"/>
    <dbReference type="EnsemblBacteria" id="SHH25270">
        <property type="protein sequence ID" value="SHH25270"/>
        <property type="gene ID" value="SAMN05444003_2571"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01392">
        <property type="entry name" value="HTH_LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000843">
        <property type="entry name" value="HTH_LacI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001761">
        <property type="entry name" value="Peripla_BP/Lac1_sug-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00356">
        <property type="entry name" value="LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00532">
        <property type="entry name" value="Peripla_BP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00354">
        <property type="entry name" value="HTH_LACI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50932">
        <property type="entry name" value="HTH_LACI_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH lacI-type" evidence="4">
        <location>
            <begin position="13"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH25270.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="334" mass="36768" checksum="5559DC6F294B68AA" modified="2017-03-15" version="1">MADTKIKGIERKPTLKTIAELSGLAVPTVSRALNDAPDIGTRTKELVRKIADEIGYVPNRAGVRLRTGRTNVVSLIMSTDHNNHTGRIIAGASGGLHDSPFHLIVTPSFPAEDVMKPVRYVVETGSADAIILNQIAPEDRRVAYLMEKKFPFVTHGRSNWADEHGYYDFDNEAYGRKAANHLKLRGRKTIAFIGPPLEQSYGGHMLKGVQEGAADNGQHFLRMSDVDSDMLSPQLADHVVEFLHQNPEIDAIVTGSTNAATAAVGAVERLRRRLGEDIDIYTKEAEPYLTLMRPELLACYENVGEAGEFLAKAAIQAVRHPELPPMQKLDVPQF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RIY1</accession>
    <name>A0A1M5RIY1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Alkylhydroperoxidase AhpD family core domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2609</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26049.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901750.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2609"/>
    <dbReference type="EnsemblBacteria" id="SHH26049">
        <property type="protein sequence ID" value="SHH26049"/>
        <property type="gene ID" value="SAMN05444003_2609"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004601">
        <property type="term" value="F:peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029032">
        <property type="entry name" value="AhpD-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69118">
        <property type="entry name" value="SSF69118"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="1" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH26049.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="189" mass="21281" checksum="551F6453A9526E01" modified="2017-03-15" version="1">MTDFPSHDLETAPEGSKPLLENSQKAFGRLPGLHKVMAESPQVLEGYQLLHKLFTETAFDADEMTVVWQTINVEHECHYCVPAHTGIAKRMKVSDEISNALRDETPLPTAKLEALRVFTLQMLRQRGNVTDEQIQTFFDAGYDHRAVLEIILGLSQKVMSNYINHVAETPLDDVVKPLAWTRSDTHIAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RLZ1</accession>
    <name>A0A1M5RLZ1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Dihydroflavonol-4-reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2645</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the NAD(P)-dependent epimerase/dehydratase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26883.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901809.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2645"/>
    <dbReference type="EnsemblBacteria" id="SHH26883">
        <property type="protein sequence ID" value="SHH26883"/>
        <property type="gene ID" value="SAMN05444003_2645"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001509">
        <property type="entry name" value="Epimerase_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01370">
        <property type="entry name" value="Epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Epimerase" evidence="2">
        <location>
            <begin position="4"/>
            <end position="241"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007637"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH26883.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="340" mass="36549" checksum="02643D8E7EE5825C" modified="2017-03-15" version="1">MQTILLTGITGYIAKHIAAQLLDAGYAVRGSMRSMKRVQEVNAAIAIGVSDPSVLTRLSFCELDLSKDIGWNNAAMGVDAIIHTASPFPMTAPKDENELIKPAVDGMMRAIKAAAEAQVDRVIITSSTAAISGSPLPQGKEAYDEADWTNTEEKGVGAYAKSKTLAERAAWDFAETQAPQIKLTSINPGFVLGAPLDTQYGTSVAVIERILRGKDPIVPDIGWNSVGVKDVAALHVKALQDDGSIGQRIMGVDRFVAFVELAEWIKADYPNRRIATKVAPHALIKALGLFDPAVREITSQLGVVQKADNAKATELLGRELSDVKESVLETARYLVEKEIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RWK7</accession>
    <name>A0A1M5RWK7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2732</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30590.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901992.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH30590">
        <property type="protein sequence ID" value="SHH30590"/>
        <property type="gene ID" value="SAMN05444003_2732"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009913582" evidence="1">
        <location>
            <begin position="20"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH30590.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="117" mass="12687" checksum="9E12E65BB11D6B3F" modified="2017-03-15" version="1">MRFLLAYIAVSIFALPAHAAWQQIADSGTFASQVVGNAYVDSNGNWFRFNANGTLSGGANGQDLAGNWQFVRGFACFNRTLGGEPVPNDCIVVLVDGDKLVTVRNEGQGRQTQYTKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RY19</accession>
    <name>A0A1M5RY19_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Inosine-uridine nucleoside N-ribohydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2736</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901998.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2736"/>
    <dbReference type="EnsemblBacteria" id="SHH30683">
        <property type="protein sequence ID" value="SHH30683"/>
        <property type="gene ID" value="SAMN05444003_2736"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016799">
        <property type="term" value="F:hydrolase activity, hydrolyzing N-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006139">
        <property type="term" value="P:nucleobase-containing compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901564">
        <property type="term" value="P:organonitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.245.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001910">
        <property type="entry name" value="Inosine/uridine_hydrolase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023186">
        <property type="entry name" value="IUNH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036452">
        <property type="entry name" value="Ribo_hydro-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12304">
        <property type="entry name" value="PTHR12304"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01156">
        <property type="entry name" value="IU_nuc_hydro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53590">
        <property type="entry name" value="SSF53590"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="1 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="IU_nuc_hydro" evidence="3">
        <location>
            <begin position="3"/>
            <end position="289"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH30683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="303" mass="32272" checksum="DF1D9838018D9339" modified="2017-03-15" version="1">MKLIIDTDPGVDDALAIALAHAMPELELIALTAIFGNTFVEQSNRNARYLLDLLGAEGVLVAEGAKLPYGADTYEPSAWVHGKEGYGDIEDIPQVGANTPETAAELLVKLTADNPGEVTVCAIGPLTNIADALRLDPTFGQNLRELVIMGGAYECPGNITPHAEANIYHDAVAAEEVFASGMPIRMVGLDATMKTLLTSDDFAEMAESSPKAGGFVDHISQFYLQFYRSVGVTNGCPMHDSTAILACAYPDKFEWKDHGVAVVQTGEEIGDTVAADRPNTKVALDVDADWAVTFVKDAIATLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RYR7</accession>
    <name>A0A1M5RYR7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="13">ATP synthase subunit b</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">ATP synthase F(0) sector subunit b</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">ATPase subunit I</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">F-type ATPase subunit b</fullName>
            <shortName evidence="13">F-ATPase subunit b</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="primary">atpF</name>
        <name evidence="17" type="ORF">SAMN05444003_2764</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0). The b'-subunit is a diverged and duplicated form of b found in plants and photosynthetic bacteria.</text>
    </comment>
    <comment type="function">
        <text evidence="11 13">F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="13">F-type ATPases have 2 components, F(1) - the catalytic core - and F(0) - the membrane proton channel. F(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). F(0) has three main subunits: a(1), b(2) and c(10-14). The alpha and beta chains form an alternating ring which encloses part of the gamma chain. F(1) is attached to F(0) by a central stalk formed by the gamma and epsilon chains, while a peripheral stalk is formed by the delta and b chains.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="13">Cell membrane</location>
            <topology evidence="13">Single-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 13 14">Belongs to the ATPase B chain family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902041.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2764"/>
    <dbReference type="EnsemblBacteria" id="SHH31350">
        <property type="protein sequence ID" value="SHH31350"/>
        <property type="gene ID" value="SAMN05444003_2764"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045263">
        <property type="term" value="C:proton-transporting ATP synthase complex, coupling factor F(o)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01398">
        <property type="entry name" value="ATP_synth_b_bprime"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002146">
        <property type="entry name" value="ATP_synth_b/b'su_bac/chlpt"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00430">
        <property type="entry name" value="ATP-synt_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 13" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="13" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 13 14" id="KW-0138">CF(0)</keyword>
    <keyword evidence="15" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6 13 14" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="8 13 14" id="KW-0406">Ion transport</keyword>
    <keyword evidence="9 13" id="KW-0472">Membrane</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="16" id="KW-0732">Signal</keyword>
    <keyword evidence="5 13 14" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 13" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 13 14" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="16">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012115728" description="ATP synthase subunit b" evidence="16">
        <location>
            <begin position="19"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="28"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="15">
        <location>
            <begin position="62"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022547"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00025198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00025614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01398"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU003848"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="SHH31350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="186" mass="19852" checksum="47F51BDDE3C7E899" modified="2017-03-15" version="1">MRVLTTSLLAMAATPAFAAGDKPFFSLANTDFVVWIAFLIFVGILLYYKVPGTVGKMLDGRADAIKADLDEAKALREEAQSLLASYERKQKEVQEQADRIVSSAKEEATRAAEAAKGDIAKSIERRLASAEEQIASAEASAIKEVRDQAIVVAVGAAEDLIAKQMDAKGANSLIDEAIAAVGEKLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S0R7</accession>
    <name>A0A1M5S0R7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2795</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32025.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902084.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2795"/>
    <dbReference type="EnsemblBacteria" id="SHH32025">
        <property type="protein sequence ID" value="SHH32025"/>
        <property type="gene ID" value="SAMN05444003_2795"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="190"/>
            <end position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH32025.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="358" mass="39945" checksum="FF6EAC6A11EA4A05" modified="2017-03-15" version="1">MADFDAQIEQSQAQVAEAQSKIAELTSRIETARQKMAEGADIAVDIENATLEDVHAHTELMNANIAELIMGLDDVTAGFSKDFDEMRSKTTMESIVGWFSGAKSDSMREERMRESSVDDKLQDLISKSDTIVKLLQGQLDMLNEQKTSVETNLSGTLDEREMVVAELEGVRAEIGGMDPAIITLENKISVEQDAAARTKLETELAELNTKYNALVQDEQVKLAKSQTLERYIEKGKTWIDSLQNQAATQMVLINKLQTDTKQRVVLYDALSKSLKTAQQQDVAHRINEIGVKTDQEAQTAMAAIGSATNAKMADMLEAHEDHMVFAREVLEQKAKADERFIRRFQKIVEKHDSNQYGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S5E0</accession>
    <name>A0A1M5S5E0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Carbon monoxide dehydrogenase, large subunit apoprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2842</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33183.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902158.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2842"/>
    <dbReference type="EnsemblBacteria" id="SHH33183">
        <property type="protein sequence ID" value="SHH33183"/>
        <property type="gene ID" value="SAMN05444003_2842"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018492">
        <property type="term" value="F:carbon-monoxide dehydrogenase (acceptor) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030151">
        <property type="term" value="F:molybdenum ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000674">
        <property type="entry name" value="Ald_Oxase/Xan_DH_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036856">
        <property type="entry name" value="Ald_Oxase/Xan_DH_a/b_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016208">
        <property type="entry name" value="Ald_Oxase/xanthine_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008274">
        <property type="entry name" value="AldOxase/xan_DH_Mopterin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037165">
        <property type="entry name" value="AldOxase/xan_DH_Mopterin-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012780">
        <property type="entry name" value="CO_Mo_DH_lsu"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11908">
        <property type="entry name" value="PTHR11908"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01315">
        <property type="entry name" value="Ald_Xan_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02738">
        <property type="entry name" value="Ald_Xan_dh_C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01008">
        <property type="entry name" value="Ald_Xan_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54665">
        <property type="entry name" value="SSF54665"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56003">
        <property type="entry name" value="SSF56003"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02416">
        <property type="entry name" value="CO_dehy_Mo_lg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ald_Xan_dh_C" evidence="1">
        <location>
            <begin position="32"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH33183.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="809" mass="88455" checksum="F862F51D5DC1E9A4" modified="2017-03-15" version="1">MKDEVITREERVANLKGMGCSRKRVEDARFTQGKGNYVDDIKLDGMLFGDFVRSPYAHAKITNIDTAAALEVPGVLAVLTAKDLEPLGLHWMPTLAGDKQMVLADGKVLFQGQEVAFVVAEDRYAAADGIEAVEVEYEELEVLIDPFKSMQSDVVLREDTVDENGKPMDGAHGPRTHHNHIFTWEAGDKDPTFEVIDSAEVVAEETMYYHRTHPCPLETCGCVASMDKVNGKLTLWGTFQAPHAIRTVVSLISGIEEHNIRVISPDIGGGFGNKVGAYPGYVCSVVASIVTGKPVKWIEDRMDNLMTTAFARDYWMKGRISATKDGKITGLHCHVTADHGGFDACADPTKFPAGFMNICTGSYDIPTAYLEVDGVYTNKAPGGVSYRCSFRVTEAVYFIERMIEVLAIELNMDAAELRRINFIKKEQFPYTAALGWEYDSGDYHTAWDKALKAVDYEGLRAEQAQRIEDFKAGKTRSLMGIGLSFFTEIVGAGPVKNCDILGLGMFDSCEIRIHPTGSAIARLGTISQGQGHATTFAQILASEIGLPADSITIEEGDTDTAPYGLGTYGSRSTPVAGAATAMAGRKIRAKAQMIAAYLLEVHDDDVEFDVDRFVVKGAPERFKTMKEIAFAAYNQAIPGIEPGLEAVSYYDPPNMTYPFGAYVCVMDIDVDTGVTDIRRFYALDDCGTRINPMVIEGQVHGGLTEALAVALGQEIAYDEMGNVKTGTLMDFFLPTAWEVPNYETDHTVTPSPHHPIGAKGVGESPHVGGVPCFSNAVQDAFRAFGLRHTNMPHDHWRIWKTANELGLHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SGF1</accession>
    <name>A0A1M5SGF1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2952</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37510.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902543.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH37510">
        <property type="protein sequence ID" value="SHH37510"/>
        <property type="gene ID" value="SAMN05444003_2952"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH37510.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="98" mass="10642" checksum="3561359F0727D7E6" modified="2017-03-15" version="1">MTLPADVSLFEVIGVTGFVLYVINYGLLTIGKLTSQQAGYFNLNWLAATFVLIGLMSSFNLASALIQVFWIVISSWGIYVRFGKKAGNSTDTLVQSVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SGN4</accession>
    <name>A0A1M5SGN4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acetoin utilization deacetylase AcuC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2949</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the histone deacetylase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37448.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902366.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2949"/>
    <dbReference type="EnsemblBacteria" id="SHH37448">
        <property type="protein sequence ID" value="SHH37448"/>
        <property type="gene ID" value="SAMN05444003_2949"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.800.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000286">
        <property type="entry name" value="His_deacetylse"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023801">
        <property type="entry name" value="His_deacetylse_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037138">
        <property type="entry name" value="His_deacetylse_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023696">
        <property type="entry name" value="Ureohydrolase_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00850">
        <property type="entry name" value="Hist_deacetyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01270">
        <property type="entry name" value="HDASUPER"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52768">
        <property type="entry name" value="SSF52768"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hist_deacetyl" evidence="2">
        <location>
            <begin position="38"/>
            <end position="324"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH37448.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="370" mass="39797" checksum="0DB79755152ACBE9" modified="2017-03-15" version="1">MSTGFYCDERSFWHGGGNYAGLLPVGGLVQPSETAGLPESPETKRRLKNLMEVTGLIHDLAVSSAPLASREDLERVHPAHYLDEFKALSDDKGGELGRRTPFGPGGYELAALSAGLSKAALAAVLRGEQKNAYALSRPPGHHCLPDYPNGFCLFNNLAVAIEAAKAEGLAERFVVLDWDVHHGNGTEAIYYDRDDVLTISIHQDRNYPMDTGAFKDRGEGAGLGYNLNIPLPPGVGHTGYLQAMEMLALPAIRDFKPDVIIIACGFDAGANDPLGRMLATHDTFAMMTDQVMALADELCGGKLMMSHEGGYSENYVPFCGHAVLQRMSGSSIEAADPFDGVFDLRQPDAAFDAYLTSVLEGFAQRLASEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SHT5</accession>
    <name>A0A1M5SHT5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">50S ribosomal protein L28</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpmB</name>
        <name evidence="7" type="ORF">SAMN05444003_2967</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the bacterial ribosomal protein bL28 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37828.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902546.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2967"/>
    <dbReference type="EnsemblBacteria" id="SHH37828">
        <property type="protein sequence ID" value="SHH37828"/>
        <property type="gene ID" value="SAMN05444003_2967"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.170.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00373">
        <property type="entry name" value="Ribosomal_L28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034704">
        <property type="entry name" value="L28p-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026569">
        <property type="entry name" value="Ribo_L28/L24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037147">
        <property type="entry name" value="Ribo_L28/L24_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001383">
        <property type="entry name" value="Ribosomal_L28"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13528">
        <property type="entry name" value="PTHR13528"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00830">
        <property type="entry name" value="Ribosomal_L28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143800">
        <property type="entry name" value="SSF143800"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00009">
        <property type="entry name" value="L28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 7" id="KW-0689">Ribosomal protein</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008760"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00373"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH37828.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="94" mass="10239" checksum="7C88E56F1EAD12A0" modified="2017-03-15" version="1">MSRRCELTGKGPMSGNNVSHANNKTKRRFLPNLQDVSLQSEALGRTFKFRISNAALRSVDHRGGLDAYLAKAKDAELSPNALKVKKEIAKATAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SJV0</accession>
    <name>A0A1M5SJV0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3010</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902454.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3010"/>
    <dbReference type="EnsemblBacteria" id="SHH38771">
        <property type="protein sequence ID" value="SHH38771"/>
        <property type="gene ID" value="SAMN05444003_3010"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH38771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="70" mass="8408" checksum="B4DD0B9B4C2058D3" modified="2017-03-15" version="1">MPKRLRLTRRFPVAMTEDGYRRLKRFAKESTLEEGEALSFLFENFDSVLNEDTFGHRLKIFQTELPDRKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SL41</accession>
    <name>A0A1M5SL41_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Dihydroorotate dehydrogenase (quinone)</fullName>
            <ecNumber evidence="7">1.3.5.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="15">DHOdehase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="14">Dihydroorotate oxidase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">SAMN05444003_3018</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(S)-dihydroorotate + a quinone = a quinol + orotate</text>
            <dbReference type="Rhea" id="RHEA:30187"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:30839"/>
            <dbReference type="ChEBI" id="CHEBI:30864"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
            <dbReference type="EC" id="1.3.5.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="5">Pyrimidine metabolism; UMP biosynthesis via de novo pathway; orotate from (S)-dihydroorotate (quinone route): step 1/1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.</text>
    </comment>
    <dbReference type="EC" id="1.3.5.2" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902464.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3018"/>
    <dbReference type="EnsemblBacteria" id="SHH38978">
        <property type="protein sequence ID" value="SHH38978"/>
        <property type="gene ID" value="SAMN05444003_3018"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00070">
        <property type="reaction ID" value="UER00946"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004152">
        <property type="term" value="F:dihydroorotate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006207">
        <property type="term" value="P:'de novo' pyrimidine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044205">
        <property type="term" value="P:'de novo' UMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd04738">
        <property type="entry name" value="DHOD_2_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005720">
        <property type="entry name" value="Dihydroorotate_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012135">
        <property type="entry name" value="Dihydroorotate_DH_1_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005719">
        <property type="entry name" value="Dihydroorotate_DH_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001295">
        <property type="entry name" value="Dihydroorotate_DH_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01180">
        <property type="entry name" value="DHO_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000164">
        <property type="entry name" value="DHO_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01036">
        <property type="entry name" value="pyrD_sub2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00911">
        <property type="entry name" value="DHODEHASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00912">
        <property type="entry name" value="DHODEHASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="10" id="KW-0288">FMN</keyword>
    <keyword evidence="13" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DHO_dh" evidence="16">
        <location>
            <begin position="44"/>
            <end position="328"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00003125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00005161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00005359"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00012791"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00018366"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00031623"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00032000"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF01180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="SHH38978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="348" mass="36449" checksum="CD8F03F3A811A24F" modified="2017-03-15" version="1">MSLLEKIGLPLIRSVDPERAHGLALSALRAGLGPRTYAFTTPRLRTVLAGMSLENPIGLAAGFDKNAVALPALHKTAFGFLEVGAATPKPQPGNPKPRLFRLTEDAAAINRFGFNNDGMVAINGRLKDHKGVVGLNLGANKDSADRAQDFAQVLSHCGSNIDFATVNVSSPNTEKLRDLQGKAALQSLLAGVIDASNALDVPIPIFLKIAPDLTSEEIAEIADVANTSSISGLIATNTTLSREGLKSAHAGEKGGLSGQPLFEKSTRVLAELSTQTHLPIIGVGGVSNAQQAYTKIRAGASAVQLYTAMVFSGVSLVHEIAVELDKLLIADGFKNVSYAVGVDKGLWT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SRG9</accession>
    <name>A0A1M5SRG9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pimeloyl-ACP methyl ester carboxylesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3060</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41085.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902591.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3060"/>
    <dbReference type="EnsemblBacteria" id="SHH41085">
        <property type="protein sequence ID" value="SHH41085"/>
        <property type="gene ID" value="SAMN05444003_3060"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12697">
        <property type="entry name" value="Abhydrolase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00111">
        <property type="entry name" value="ABHYDROLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="40"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH41085.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="233" mass="25780" checksum="CFA251AE47FFE719" modified="2017-03-15" version="1">MTPLVFLPGMMCDERLFAHQIDAMSNDRAIHVAAFDGTHVATIAEEILKSAPPHFALAGLSMGGIVAMEILRQSPERVQAVALLDTNPLAETREVMERRIPQIEMAMNGNLEAVMRDEMKPNYLTEGPHRQSILDLCMDMALSMGPTAFIEQSRALQTRPDQTDTLRAYKSPTLILCGEEDTLCPVHRHTLMHELMPHSTLTILPNAGHLPTLEQPEATTAALQAWLKEIPNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5ST82</accession>
    <name>A0A1M5ST82_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Carbohydrate ABC transporter membrane protein 2, CUT1 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_3092</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41690.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902638.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3092"/>
    <dbReference type="EnsemblBacteria" id="SHH41690">
        <property type="protein sequence ID" value="SHH41690"/>
        <property type="gene ID" value="SAMN05444003_3092"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="107"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="143"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="178"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="219"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="276"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="107"/>
            <end position="297"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH41690.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="312" mass="34392" checksum="18F6A1DF97431068" modified="2017-03-15" version="1">MSFSVTEPTKGTKWFSGILVVIYAVITIVPLLWIIATGFKSPADSIAYPPVVFFEPTLEGYVNLFTDRTRATAEMLEEAGPPQTWYEEIARERGTVISGPSRYGERFLNSVIIGFGSTALCMVLGTAAAYAFSRFRVPLKDDLLFFILSTRMMPPIAVAIPIFLMFRNLGLNDTHLGMILLYTAVNLSLSVWLLKGFIDEIPMEYEEAALIDGYTRFQAFYKVVLPQAATGIASTAIFCLIFAWNEYAFAVLLTSGTAQTAPPFIPNIIGVNGKDWPAVAAGATLFLVPVMVFTVLLRKHLLRGITFGAVRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SU14</accession>
    <name>A0A1M5SU14_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3111</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41994.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902664.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH41994">
        <property type="protein sequence ID" value="SHH41994"/>
        <property type="gene ID" value="SAMN05444003_3111"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH41994.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="172" mass="18726" checksum="42649CA7641A62EC" modified="2017-03-15" version="1">MSDVPVVNENKSSSKLYPKLVKDGENEYRAEVPEGLRMNGLLGTETIDAAHGIFQTALHALGKSAEQYGSMASAMFAELESRDAIEAMLIAQMTATHVTISTLTERLTYQTSTEIRESLERSVTRLSRTFIAQMDALKQHRAKAQQTVRVERVTVNEGGQAIVGDVRGVGGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SUY6</accession>
    <name>A0A1M5SUY6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3129</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42297.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902688.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3129"/>
    <dbReference type="EnsemblBacteria" id="SHH42297">
        <property type="protein sequence ID" value="SHH42297"/>
        <property type="gene ID" value="SAMN05444003_3129"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016187">
        <property type="entry name" value="CTDL_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005532">
        <property type="entry name" value="SUMF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042095">
        <property type="entry name" value="SUMF_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03781">
        <property type="entry name" value="FGE-sulfatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56436">
        <property type="entry name" value="SSF56436"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FGE-sulfatase" evidence="1">
        <location>
            <begin position="15"/>
            <end position="316"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH42297.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="319" mass="35812" checksum="4DA8EC45F324B5B7" modified="2017-03-15" version="1">MDDASIAPLGRPPHPQMQWVPGGTYLMGSDKHYPEEAPAHQVTIDGFWMDKFQVTNAQFARFIKKTGYVTVAERAPNPEDFPGAPAENLVPGSLVFQPTSGPVDLEKVNLWWRWTPGACWKHPEGPKSHVKSRGRHPVVHIAHEDAQAYADWIGKDLPTEAEWERAARGGLEAKDYVWGDEHFPKGRPFANTWQGEFPWQNLVTDGFEGTAPVGSFPPNKFGLNDMAGNVWEWTNDWWKEAHPSEPGKPCCIPTNPRGGERDNSFDPAAPDWQVPRKVVKGGSYLCAPNYCLRYRPAARRPHMIDTGTTHIGFRCISRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SVS8</accession>
    <name>A0A1M5SVS8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="10">L-glutamine ABC transporter membrane protein /L-glutamate ABC transporter membrane protein /L-aspartate ABC transporter membrane protein /L-asparagine ABC transporter membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_3145</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the binding-protein-dependent transport system permease family. HisMQ subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42589.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902714.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3145"/>
    <dbReference type="EnsemblBacteria" id="SHH42589">
        <property type="protein sequence ID" value="SHH42589"/>
        <property type="gene ID" value="SAMN05444003_3145"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010065">
        <property type="entry name" value="AA_ABC_transptr_permease_3TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043429">
        <property type="entry name" value="ArtM/GltK/GlnP/TcyL/YhdX-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30614">
        <property type="entry name" value="PTHR30614"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01726">
        <property type="entry name" value="HEQRo_perm_3TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="37"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="107"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="134"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="156"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="181"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="222"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="257"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="297"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="341"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="394"/>
            <end position="413"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="222"/>
            <end position="417"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH42589.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="429" mass="47142" checksum="9E29317506D7BE2B" modified="2017-03-15" version="1">MASEYSYVRTDFLGESPPPARETGAIKWMRENLFSGWLNTILTVLAIYFVVWLVVGVWPWFANGVWDADNLAECRAILDGATGACFAVLSDRWTQMLFGIAYPADGFWRPTLAFILLFPSVAPALFAQYVPRKFLIATALYPFLAYWLIWGGTIMIPIVTLIGLIAAYFAFIRLERASGFFMGLVGGVVAAAIIWYLGGFVTDAMSGFLALPEVASRDMGGFMLNMILGVVCVSLSLPLGIVLALGRQSSMPIIKGICVIFIEFIRGVPLITLLFVANVVLAYFFPPGTNLDLILRVIIMITMFSAAYIAEVIRGGLAALPKGQYEAGDSLGLNYSQAMRLIILPQALKISIPGIVNVAVGLFKDTTLVSVISMFDLVGVIRGPILSSTDWTGVYWEAFGFAALLFFVICYGISQYSQWLERQLQTDHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T8F1</accession>
    <name>A0A1M5T8F1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Histidine kinase</fullName>
            <ecNumber evidence="3">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">SAMN05444003_3277</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46633.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902957.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3277"/>
    <dbReference type="EnsemblBacteria" id="SHH46633">
        <property type="protein sequence ID" value="SHH46633"/>
        <property type="gene ID" value="SAMN05444003_3277"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033479">
        <property type="entry name" value="dCache_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029151">
        <property type="entry name" value="Sensor-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017055">
        <property type="entry name" value="Sig_transdc_His_kinase_DctB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02743">
        <property type="entry name" value="dCache_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036431">
        <property type="entry name" value="STHK_DctB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103190">
        <property type="entry name" value="SSF103190"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="12" id="KW-0418">Kinase</keyword>
    <keyword evidence="8 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0808">Transferase</keyword>
    <keyword evidence="6 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="278"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="11">
        <location>
            <begin position="361"/>
            <end position="568"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="9">
        <location>
            <begin position="308"/>
            <end position="352"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHH46633.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="573" mass="62985" checksum="0D9F99457B9D8D4B" modified="2017-03-15" version="1">MRIFVPLLLIGVMAIGAFGAYWGAYVYFRAEVMDRAAARLSLYRSTVVSELERFSHLTFVLANDSFVIATARGGNRQVLNERLAGFADRAGIDAIYLMDLSGVTQSASNAGTTRSFVGQDYSFRPYFQQALNGRQGQFYGIGATTGIPGYFYAEAVNGPNGAALGVIAIKIDLSKLQTSWQEAGEKVILANADGISLLASEPNWRYRAMSDLSPAQVTRIADARQFSGQDLPRLDWMTDATGTAQVEGEDLLHLSSLDLPNDWALHYFTTDDVAVTRSWLATAIMVFLAGSAFIIFQIQRNQRIGRALQRSEAEEAQLRLANERLAIEIEDRRAAELKLQRTQTELERASRLAALGQLSASVTHELGQPITAMRNHLTVAEMQGGPSKIVDKMKDLVDRMEGITRQLKFFARKGRDNFEDFDLRDAHAAALELLAPNLKQQGVKVTEHFGEDPLVIHGNRLRIEQVMTNLLRNALDATEAIDAPKITVEAGTDENTIWYQIADNGHGLDDQNFDDLKEPFRSTRESGKGMGLGLTISAGIVEDHNGHLKASNGTEGGAVFKATFPAPTAEEVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TA38</accession>
    <name>A0A1M5TA38_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sugar phosphate isomerase/epimerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3295</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000009">
        <property type="protein sequence ID" value="SHH47536.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072903000.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000009.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3295"/>
    <dbReference type="EnsemblBacteria" id="SHH47536">
        <property type="protein sequence ID" value="SHH47536"/>
        <property type="gene ID" value="SAMN05444003_3295"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AP_endonuc_2" evidence="1">
        <location>
            <begin position="29"/>
            <end position="249"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH47536.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="289" mass="32572" checksum="86BF5F86828510AF" modified="2017-03-15" version="1">MPETFDQDPLYSLAHLTLINCTPAELVYIAARAGYDAVSPRFITMNVPGEFERSPLDPAQIQALETAIDTTGLQVLDIELARITEDCDPRDFESAFELGARLNAKHMIMSAWTKRRDDRNFILDTYAETCDLAAPYGLTIDLEFPSFSRLRTLDETLDIVRAADRPNGGILVDTLYLHLSRVDLGELLHVPQEWLHFLHISDCLPGIADTREGMIQLARDARLYPGEGWIDFAGIIERCPPMNYSIELPNQARVAELGFEEHARRCLAHAKRTFGEARSKRRSVTQQAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TCE4</accession>
    <name>A0A1M5TCE4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gluconate 5-dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3322</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000011">
        <property type="protein sequence ID" value="SHH48388.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072903045.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000011.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3322"/>
    <dbReference type="EnsemblBacteria" id="SHH48388">
        <property type="protein sequence ID" value="SHH48388"/>
        <property type="gene ID" value="SAMN05444003_3322"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH48388.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="253" mass="26221" checksum="BADD2DC04CF56DB4" modified="2017-03-15" version="1">MNDPRDLFDLSGRVACITGASSGLGRQAARALAAAGANVVGVARRQSALDSLCDELGAKGAAVAADVADRDKLDAMAAAISEPFGPPDIVIHAAGVNTREPADDVTDKGWDQTLALNLSTPFFLSRAFVPAMKAKGWGRIVNFASLQTTRAFPGGIAYGATKGGVAQLTRAMAEAWSRYGITANAIGPGFFPTELTQAVFDDPDRAARNAAQTCIGRNGEMSDMDGPILFLCSDASSYVTGQVLMVDGGFTAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5KZX6</accession>
    <name>A0A1M5KZX6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0015</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898333.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0015"/>
    <dbReference type="EnsemblBacteria" id="SHG58220">
        <property type="protein sequence ID" value="SHG58220"/>
        <property type="gene ID" value="SAMN05444003_0015"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="75"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="138"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="171"/>
            <end position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG58220.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="191" mass="21074" checksum="3F0652E2172978A2" modified="2017-03-15" version="1">MNTPAHLIFGLAAFGKPESKAVTAAALIGALLPDFSLYAMAGWHLNVLGTPPQVVFGELYFSDTWQSIFRIDNSIVIWSIGLALAIMFRSSIAFALCGAALLHLGLDLPLHNDDARAHFWPITNWIFASPVSYWDPDYYGNIVGPVEILLSLIACAYLWRRYKGIPMRILIAVLGLMEFAPVILFTLMFAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L0S2</accession>
    <name>A0A1M5L0S2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized domain 1-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0031</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58591.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898359.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0031"/>
    <dbReference type="EnsemblBacteria" id="SHG58591">
        <property type="protein sequence ID" value="SHG58591"/>
        <property type="gene ID" value="SAMN05444003_0031"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003736">
        <property type="entry name" value="PAAI_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006683">
        <property type="entry name" value="Thioestr_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03061">
        <property type="entry name" value="4HBT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00369">
        <property type="entry name" value="unchar_dom_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4HBT" evidence="1">
        <location>
            <begin position="71"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG58591.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="160" mass="17239" checksum="5B9959E4D8C39C56" modified="2017-03-15" version="1">MFTATSIDQLPELEDVKAISGLEFMQKMLAGEIARPPISGLLNYQIDTVEPQKVIFRGTPEFEHCNPLRGIHGGWYGALLDSCMACAVMTTVPQGSVYTTLEYKINITRALPIGTEILATGIVDHAGRSTGVAHGEIRGAKDGKLYATGSTTCLIMKLPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L1M1</accession>
    <name>A0A1M5L1M1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0045</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58891.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG58891">
        <property type="protein sequence ID" value="SHG58891"/>
        <property type="gene ID" value="SAMN05444003_0045"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010607">
        <property type="entry name" value="DUF1194"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06707">
        <property type="entry name" value="DUF1194"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG58891.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="241" mass="26118" checksum="93D8E95D9917D5BA" modified="2017-03-15" version="1">MDEHGQHWALVRTLSLFAALAVLPNPADACRLALVLAMDVSISVDAREDALQRQGLANALLAQDVQDAFFVSPDPVALAIFEWSGRFSQSEILDWTLIETPEDLEDASERVSTSARQYTDDPTALGHALGYASLLLRDAPDCLFKTIDVSGDGESNDGFPPSSAFAAFPFEGVTVNGLAIRTDAEGEPFHLPTYYETEVIRGAGAFIEEAAGFVDFENAMERKLVRELQALAIGWLAPADQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L2F5</accession>
    <name>A0A1M5L2F5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0059</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59171.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898398.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0059"/>
    <dbReference type="EnsemblBacteria" id="SHG59171">
        <property type="protein sequence ID" value="SHG59171"/>
        <property type="gene ID" value="SAMN05444003_0059"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018740">
        <property type="entry name" value="DUF2282_membr"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10048">
        <property type="entry name" value="DUF2282"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012770568" evidence="1">
        <location>
            <begin position="28"/>
            <end position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG59171.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="100" mass="9663" checksum="A9069DDFBB9EACE7" modified="2017-03-15" version="1">MSTVSKTLIVASAVATAVAGAAGSAAAQENEKCYGVSLAGANDCAAGPGTTCAGSSTVDYQGNAWTLVPAGTCADIELPAMADGTARVGSLEALERDLPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L318</accession>
    <name>A0A1M5L318_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Haloacetate dehalogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0072</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59417.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898410.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0072"/>
    <dbReference type="EnsemblBacteria" id="SHG59417">
        <property type="protein sequence ID" value="SHG59417"/>
        <property type="gene ID" value="SAMN05444003_0072"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="26"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG59417.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="294" mass="32454" checksum="DB7EE2660468CADE" modified="2017-03-15" version="1">MFEGFSKQTITVDGVEIFCRVGGEGPPLLLLHGYPQTHVMWHKVVPELSKQFTCVCPDLRGYGASAKPPTTADHAPYSKRAMAADMIGVMKALGFDTFRVLSHDRGARVAHRMALDWPEQVERMVILDIAPTREMYAGTTDSFARTYWHWFFLIQPAPLPEDAILADPEAFVRRKCGSWGSGGEALTEVALQAYIEGFSDPATIHAACEDYRAAATIDIEHDNADGGKKVTCPIQVLWGSKGAIEAHFDCLALWRQRAENVIGGTIPCGHYIAEERPEDLLQTTMPFLSSNLTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L3X9</accession>
    <name>A0A1M5L3X9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Amino acid ABC transporter membrane protein 2, PAAT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_0084</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the binding-protein-dependent transport system permease family. HisMQ subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898426.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0084"/>
    <dbReference type="EnsemblBacteria" id="SHG59640">
        <property type="protein sequence ID" value="SHG59640"/>
        <property type="gene ID" value="SAMN05444003_0084"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071705">
        <property type="term" value="P:nitrogen compound transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010065">
        <property type="entry name" value="AA_ABC_transptr_permease_3TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01726">
        <property type="entry name" value="HEQRo_perm_3TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="44"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="78"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="105"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="220"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="7">
        <location>
            <begin position="40"/>
            <end position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG59640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="268" mass="30527" checksum="94C985EFB858DA2F" modified="2017-03-15" version="1">MSCAQTIADYAFRSIGYGERLLPRSDFTLCKQFTLIGSGMIWNIYFGVLAMLIGFVIATAVAVGKGSSNRLTRKASEWFIFIFRGSPLFIQFFFAYFLFLELKTVFPIFSPLTAAAWGALIVLILNTAAYSGEIFYGALQSIPKGDIEAADAYGLSGWSRFKRITWPTMLRLGWPAYTNEAIFLFHATTLVFFAGFPARQQRGDALYYANYFADKTFNPFIPYPILAAYFILLTLIVIWVFGRANTRLNRHLPQDAHRKIRYRPQLLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L4Q0</accession>
    <name>A0A1M5L4Q0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Ferredoxin, 2Fe-2S</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0106</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>2Fe-2S cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49601"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the adrenodoxin/putidaredoxin family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60084.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898462.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0106"/>
    <dbReference type="EnsemblBacteria" id="SHG60084">
        <property type="protein sequence ID" value="SHG60084"/>
        <property type="gene ID" value="SAMN05444003_0106"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140647">
        <property type="term" value="P:P450-containing electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001055">
        <property type="entry name" value="Adrenodoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018298">
        <property type="entry name" value="Adrenodoxin_Fe-S_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23426">
        <property type="entry name" value="PTHR23426"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00355">
        <property type="entry name" value="ADRENODOXIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00814">
        <property type="entry name" value="ADX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="3">
        <location>
            <begin position="2"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001939"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010914"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG60084.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="107" mass="11654" checksum="13BBCF40329B1FA1" modified="2017-03-15" version="1">MAKITYVEFGGKEHVVDVANGLTVMEGARDNGIPGIEADCGGACACSTCHVYVDSAWVEKIPAKDAMEEDMLDFAYEPNPETSRLTCQIKVTDDLDGLRVQMPEKQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L5J8</accession>
    <name>A0A1M5L5J8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein YjbI, contains pentapeptide repeats</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0115</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60288.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898472.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0115"/>
    <dbReference type="EnsemblBacteria" id="SHG60288">
        <property type="protein sequence ID" value="SHG60288"/>
        <property type="gene ID" value="SAMN05444003_0115"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001646">
        <property type="entry name" value="5peptide_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00805">
        <property type="entry name" value="Pentapeptide"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012725510" evidence="1">
        <location>
            <begin position="22"/>
            <end position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG60288.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="231" mass="22839" checksum="218C137C0E862D23" modified="2017-03-15" version="1">MKRTFTALTISITMFGSSASAFDPNDLQKLSNTRDCKDCDLGLADLSDANLGGSNLSGANLSGANLVNANINAAKLEYSDLAAAVLSGANLRDANLNNADLSAANLVSADLSGADLTGANLNASNLNAANLRGTTLTTAGISAANLRDADLSGANLKNADLSASNLAGSDLSGADLTGVDLGAANLSGANLSSADLSNASLIGANLGAANLNGVTRCNTIMPDTSVDNSGC</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L6S0</accession>
    <name>A0A1M5L6S0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">N-methylglutamate synthase subunit C</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0138</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the glutamate synthase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60804.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898496.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0138"/>
    <dbReference type="EnsemblBacteria" id="SHG60804">
        <property type="protein sequence ID" value="SHG60804"/>
        <property type="gene ID" value="SAMN05444003_0138"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015930">
        <property type="term" value="F:glutamate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006537">
        <property type="term" value="P:glutamate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02808">
        <property type="entry name" value="GltS_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024188">
        <property type="entry name" value="GltB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043578">
        <property type="entry name" value="GltB_archl_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002932">
        <property type="entry name" value="Glu_synthdom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01645">
        <property type="entry name" value="Glu_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF500061">
        <property type="entry name" value="GOGAT_lg2_archl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006429">
        <property type="entry name" value="GOGAT_lg_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glu_synthase" evidence="4">
        <location>
            <begin position="85"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="114"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR006429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG60804.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="448" mass="47715" checksum="B0BA13FF14D0FF2D" modified="2017-03-15" version="1">MNKHDPKGIPHTTPRQSATFTQDVNSDIRRAAATGIYDIRGGGAKRKVPSFDDLLFMGASISRYPLEGYREKCDTNVTIGGLNASNPIELDIPITIAGMSFGALSGPAKEALGRGASAAGTSTTTGDGGMTPEERGHSDKLVYQYLPSRYGMNPNDLRKADAIEIVVGQGAKPGGGGMLLGQKISDRVAEMRNLPKGIDQRSACRHPDWTGPDDLEIKILELREITGWKVPIYVKVAGARPYYDTTLAVKAGADAVVLDGMQGGTAATQDVFIEHVGLPTLAIVRPAVQALQDLGMHRKVQLILSGGIRSGADVAKAMALGADAVAIGTAALIALGDNDPKWEAEYNKLGTTAGAYDDWHEGQDPAGITTQDPDLMARFDPIEGGRRLRNYLKVMTLEAQTIARACGKNHLHNLEPEDLVALTMEAAAMAKVPLAGTDWYPGKTGTRY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L6X2</accession>
    <name>A0A1M5L6X2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0125</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60509.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898482.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0125"/>
    <dbReference type="EnsemblBacteria" id="SHG60509">
        <property type="protein sequence ID" value="SHG60509"/>
        <property type="gene ID" value="SAMN05444003_0125"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="44"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="60"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG60509.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="103" mass="11506" checksum="F1787B109FD2A69D" modified="2017-03-15" version="1">MQGTKIATCCYCGTKAALVLRGKTHHELSCSSCGAPLQAMKMLPSGLDRVTAPAATPTRPKPKKRSKSKPSHWGEKKRKSKKRKGFGQKLWSEFWDEIEDIFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LAP2</accession>
    <name>A0A1M5LAP2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 7">UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase</fullName>
            <ecNumber evidence="6 7">6.3.2.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">D-alanyl-D-alanine-adding enzyme</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">murF</name>
        <name evidence="11" type="ORF">SAMN05444003_0169</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 7">Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6 7">
            <text>ATP + D-alanyl-D-alanine + UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptanedioate = ADP + H(+) + phosphate + UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine</text>
            <dbReference type="Rhea" id="RHEA:28374"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57822"/>
            <dbReference type="ChEBI" id="CHEBI:61386"/>
            <dbReference type="ChEBI" id="CHEBI:83905"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.10"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="6 7">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6 7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the MurCDEF family. MurF subfamily.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.10" evidence="6 7"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61483.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898536.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0169"/>
    <dbReference type="EnsemblBacteria" id="SHG61483">
        <property type="protein sequence ID" value="SHG61483"/>
        <property type="gene ID" value="SAMN05444003_0169"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047480">
        <property type="term" value="F:UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008766">
        <property type="term" value="F:UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02019">
        <property type="entry name" value="MurF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036565">
        <property type="entry name" value="Mur-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004101">
        <property type="entry name" value="Mur_ligase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036615">
        <property type="entry name" value="Mur_ligase_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013221">
        <property type="entry name" value="Mur_ligase_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000713">
        <property type="entry name" value="Mur_ligase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035911">
        <property type="entry name" value="MurE/MurF_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005863">
        <property type="entry name" value="UDP-N-AcMur_synth"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01225">
        <property type="entry name" value="Mur_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02875">
        <property type="entry name" value="Mur_ligase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08245">
        <property type="entry name" value="Mur_ligase_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53244">
        <property type="entry name" value="SSF53244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53623">
        <property type="entry name" value="SSF53623"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63418">
        <property type="entry name" value="SSF63418"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01143">
        <property type="entry name" value="murF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 6 7" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="1 6 7" id="KW-0132">Cell division</keyword>
    <keyword evidence="2 6 7" id="KW-0133">Cell shape</keyword>
    <keyword evidence="5 6 7" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 11" id="KW-0436">Ligase</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3 6 7" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mur_ligase" evidence="8">
        <location>
            <begin position="24"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="domain" description="Mur_ligase_M" evidence="10">
        <location>
            <begin position="106"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="domain" description="Mur_ligase_C" evidence="9">
        <location>
            <begin position="330"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="108"/>
            <end position="114"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU004136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02875"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF08245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG61483.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="471" mass="49789" checksum="6588B07883B98ED4" modified="2017-03-15" version="1">MTLWTAKDAAQATGGQATTDWQANGVSIDTRTIQMGDLFVALKDIRDGHDFVAQALEKGAAAALVTHRPDGVAENAPLLIVPDVLKALEALGSAARARTDAKVMGITGSVGKTSTKEMLREVLKPQGKTHAAEASYNNHWGVPLTLARMPQDTEFAIIEIGMSNPGEIAPLSNLAQPHVVMITTVAAAHLEAFESIEGIAHEKAAIMDGLLAGGTAILNADIETTAILQTKAKDIGVTPILFGTKNADWQITDVRLSTDRTIISATHGDADYLFKLSVAGRHFASNAVGVLASVEALGADPTQAALDIAHWLPPAGRGTREVVTLDPARTDETLDLIDDAFNANPTSMTAALEILAAATPVDNVGRIIKGRRIAILGDMLELGGEEMAMHRDLSQDTNLQTADLIHCAGPRMKHLYDALPEEKRGLWAEQAQELASQPAALVDAGDVVLVKGSKGSKVSLVVDAIRKLGHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LDE3</accession>
    <name>A0A1M5LDE3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 13">Biotin carboxylase</fullName>
            <ecNumber evidence="5 13">6.3.4.14</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11 13">Acetyl-coenzyme A carboxylase biotin carboxylase subunit A</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">SAMN05444003_0219</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 13">This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 13">
            <text>ATP + hydrogencarbonate + N(6)-biotinyl-L-lysyl-[protein] = ADP + H(+) + N(6)-carboxybiotinyl-L-lysyl-[protein] + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13501"/>
            <dbReference type="Rhea" id="RHEA-COMP:10505"/>
            <dbReference type="Rhea" id="RHEA-COMP:10506"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17544"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:83144"/>
            <dbReference type="ChEBI" id="CHEBI:83145"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.4.14"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 13">Lipid metabolism; malonyl-CoA biosynthesis; malonyl-CoA from acetyl-CoA: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4 13">Acetyl-CoA carboxylase is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and the two subunits of carboxyl transferase in a 2:2 complex.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.14" evidence="5 13"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62729.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898616.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0219"/>
    <dbReference type="EnsemblBacteria" id="SHG62729">
        <property type="protein sequence ID" value="SHG62729"/>
        <property type="gene ID" value="SAMN05444003_0219"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00655">
        <property type="reaction ID" value="UER00711"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003989">
        <property type="term" value="F:acetyl-CoA carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004075">
        <property type="term" value="F:biotin carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:2001295">
        <property type="term" value="P:malonyl-CoA biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004549">
        <property type="entry name" value="Acetyl_CoA_COase_biotin_COase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005481">
        <property type="entry name" value="BC-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011764">
        <property type="entry name" value="Biotin_carboxylation_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005482">
        <property type="entry name" value="Biotin_COase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005479">
        <property type="entry name" value="CbamoylP_synth_lsu-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011054">
        <property type="entry name" value="Rudment_hybrid_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02785">
        <property type="entry name" value="Biotin_carb_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00289">
        <property type="entry name" value="Biotin_carb_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02786">
        <property type="entry name" value="CPSase_L_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00878">
        <property type="entry name" value="Biotin_carb_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51246">
        <property type="entry name" value="SSF51246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00514">
        <property type="entry name" value="accC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50979">
        <property type="entry name" value="BC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00866">
        <property type="entry name" value="CPSASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00867">
        <property type="entry name" value="CPSASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="9 12 13" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10 13" id="KW-0092">Biotin</keyword>
    <keyword evidence="13" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="13" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="7 13" id="KW-0436">Ligase</keyword>
    <keyword evidence="13" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="13" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="8 12 13" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="16" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Biotin carboxylation" evidence="15">
        <location>
            <begin position="1"/>
            <end position="444"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-grasp" evidence="14">
        <location>
            <begin position="120"/>
            <end position="316"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000861"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003761"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00017242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023267"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00033786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU365063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS50979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="SHG62729.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="448" mass="48837" checksum="B05C2D7F8A4CC6B0" modified="2017-03-15" version="1">MFDKILIANRGEIALRVVRACREMGIKSVAVHSTADADAMHVRMADEAICIGPPSSTDSYLSFPAIISACEVTGAQAIHPGYGFLSENANFVQVVEDHGITFIGPTAEHIRVMGDKITAKDTMKQLGVPCVPGSDGGVDTLADAKRIGEEIGYPVIIKATAGGGGRGMKVAQTADDMEQAFHSARAEGKAAFGNDEVYIEKYLTTPRHIEIQVFGDGKGNAVHLGERDCSLQRRHQKVFEEAPGPCITPELREKIGKVCADAVAKINYIGAGTIEFLFENDEFYFIEMNTRLQVEHPVTEGIFGVDLVREQIRVASGLPMSFGQDDLEINGHSIEVRINAERLPNFAPCPGTITQYHAPGGLGVRMDSALYDGYRIPPYYDSLIGKLIVHGRDRPEALARLARALGELIVDGVDTTVPLFHALLNEDAVLTGDYNIHWLEHWLEDNLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LIW6</accession>
    <name>A0A1M5LIW6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Isopenicillin N synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0316</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the iron/ascorbate-dependent oxidoreductase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64968.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898762.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG64968">
        <property type="protein sequence ID" value="SHG64968"/>
        <property type="gene ID" value="SAMN05444003_0316"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026992">
        <property type="entry name" value="DIOX_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044861">
        <property type="entry name" value="IPNS-like_FE2OG_OXY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027443">
        <property type="entry name" value="IPNS-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005123">
        <property type="entry name" value="Oxoglu/Fe-dep_dioxygenase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03171">
        <property type="entry name" value="2OG-FeII_Oxy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14226">
        <property type="entry name" value="DIOX_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51471">
        <property type="entry name" value="FE2OG_OXY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0408">Iron</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fe2OG dioxygenase" evidence="2">
        <location>
            <begin position="170"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU003682"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG64968.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="307" mass="33581" checksum="8618C4660195D0B2" modified="2017-03-15" version="1">MIPRIDAQALLDAAHLDHDAAKTLVATAATDIGFMTVHNTPIDPAFVADAIEHYRAFFKLPAATKQKYDMAQTGSNRGWGAPGSEQVDPNANPDYKQVFDIGSILPDGAPDSAKGLLTYAPNVWPDAPDGFADALRSYYYKSTEFALDLLCAIADAVGEDADYFRNQFTYPMSLVRGNFYPERPEWASERDFGIATHTDYGCLTLLATDGTPGLEVRKRGGGWIPVTAPIGEFVINFGEMLEFWTGGKVVATPHRVIGTDDERISIPLFFNPNHDANVAPKGKPPISAGAHLEQRYKETYVHLQKAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LQ34</accession>
    <name>A0A1M5LQ34_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0417</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67158.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898904.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG67158">
        <property type="protein sequence ID" value="SHG67158"/>
        <property type="gene ID" value="SAMN05444003_0417"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="4"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="27"/>
            <end position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG67158.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="189" mass="21340" checksum="9EEF777E5F3C408E" modified="2017-03-15" version="1">MRAEIRRGHILDATEGLLLEVGSAGLTMRSIATSTGISLGNLQYHFPTREDVLLALLNRFLTPYEERLRNLPERTSENVAEALGFVFKTVLNDQDFDRCATIYKEIWAASSHSEEMRNALNTYYRRLAEFYRKLLSNVAAPQVDPEKIRRAAAAMLPVLEGYCVTKDAVDLPVEETVEDWSKMIAGLIC</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LQS2</accession>
    <name>A0A1M5LQS2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Predicted arabinose efflux permease, MFS family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0424</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67316.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0424"/>
    <dbReference type="EnsemblBacteria" id="SHG67316">
        <property type="protein sequence ID" value="SHG67316"/>
        <property type="gene ID" value="SAMN05444003_0424"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="42"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="78"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="104"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="138"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="168"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="219"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="257"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="284"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="309"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="345"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="378"/>
            <end position="399"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="218"/>
            <end position="405"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG67316.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="405" mass="42885" checksum="628F84940DBBD977" modified="2017-03-15" version="1">MSMVDDTRAKRNVVILVMAQAILGSQMPMIFVIGGLAGGMLASNICFATLPISIIVFGSMTTAPWLSPLMQKRGRQFGFMLGALAGAVGAAIGAYGLYVGSFFWLLVGSYFTGIYMSAQGFYRFAATDTASEDFRPKAISYVMAGGLLSAIIGPQLNKVVQEAYVVPFLGTYLAVVALNLVGMLLFLFLDLPKGGEVEEEKAQAVPGRSRMELLRDPRILVAIICGMVAYSLMNLVMTSTPLAVVGCGFTTNNANDVVSAHVLAMFAPSFFTGHLIARYGVEKIMGAGIVILAGAGLVALSGVTLTNFFLALVLLGLGWNFGFIGATTLLSSAHSPNERGSVQGMNDMIVFGMVTIASLSSGGLMNCSGGDPVEGWNAVNYAMVPFLILAGWSIVWLVMRQRRVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LUY3</accession>
    <name>A0A1M5LUY3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Arginine--tRNA ligase</fullName>
            <ecNumber evidence="9">6.1.1.19</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Arginyl-tRNA synthetase</fullName>
            <shortName evidence="9">ArgRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">argS</name>
        <name evidence="13" type="ORF">SAMN05444003_0485</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>ATP + L-arginine + tRNA(Arg) = AMP + diphosphate + L-arginyl-tRNA(Arg)</text>
            <dbReference type="Rhea" id="RHEA:20301"/>
            <dbReference type="Rhea" id="RHEA-COMP:9658"/>
            <dbReference type="Rhea" id="RHEA-COMP:9673"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:32682"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78513"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.19"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="9">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9 10">Belongs to the class-I aminoacyl-tRNA synthetase family.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.19" evidence="9"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68710.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899007.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0485"/>
    <dbReference type="EnsemblBacteria" id="SHG68710">
        <property type="protein sequence ID" value="SHG68710"/>
        <property type="gene ID" value="SAMN05444003_0485"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004814">
        <property type="term" value="F:arginine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006420">
        <property type="term" value="P:arginyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00671">
        <property type="entry name" value="ArgRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00123">
        <property type="entry name" value="Arg_tRNA_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001412">
        <property type="entry name" value="aa-tRNA-synth_I_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001278">
        <property type="entry name" value="Arg-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005148">
        <property type="entry name" value="Arg-tRNA-synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036695">
        <property type="entry name" value="Arg-tRNA-synth_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035684">
        <property type="entry name" value="ArgRS_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008909">
        <property type="entry name" value="DALR_anticod-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009080">
        <property type="entry name" value="tRNAsynth_Ia_anticodon-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11956">
        <property type="entry name" value="PTHR11956"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03485">
        <property type="entry name" value="Arg_tRNA_synt_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05746">
        <property type="entry name" value="DALR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00750">
        <property type="entry name" value="tRNA-synt_1d"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01038">
        <property type="entry name" value="TRNASYNTHARG"/>
    </dbReference>
    <dbReference type="SMART" id="SM01016">
        <property type="entry name" value="Arg_tRNA_synt_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00836">
        <property type="entry name" value="DALR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47323">
        <property type="entry name" value="SSF47323"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55190">
        <property type="entry name" value="SSF55190"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00456">
        <property type="entry name" value="argS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00178">
        <property type="entry name" value="AA_TRNA_LIGASE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9 10" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="6 9 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 9 10" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 9 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7 9 10" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Arg_tRNA_synt_N" evidence="12">
        <location>
            <begin position="5"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="domain" description="DALR_1" evidence="11">
        <location>
            <begin position="450"/>
            <end position="579"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region" evidence="9">
        <location>
            <begin position="130"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001766"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU363038"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00836"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM01016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHG68710.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="580" mass="63687" checksum="9DAE5766655E2250" modified="2017-03-15" version="1">MNLFADLRATVVAAIDAMVAEGALPDGLNTAAVTVEPPRDPLHGDMATNAAMVLAKPAKMNPRQIAEGLASKLAADDAVTSADVAGPGFINLRLAATQWHGVISAALTQDGYGRSAMGQGQKMMVEYVSANPTGPLHVGHTRGAVFGDALASLLDYAGFDVTREYYINDGGAQVDVLARSVYLRYLEAHGQEVAFEDGTYPGDYLIPVGLALKDKVGDKFVDKGEQFWLEEIREYATEAMMDLIRDDLAQLGIKMDMFFSEKSLYGTGRIEDAIQSLKDKGLIYEGVLEPPKGKVPEDWEPREQTLFKSTEYGDDVDRPVQKSDGAWTYFAPDIAYHYDKVERGFDQLIDVFGADHGGYVKRMKAAVAALSDERVPLDIKLTQLVKLYKNGEPFKMSKRAGTFITLRDVVEQVGADVTRFHMLTRKNDAPLDFDFDKVTEQSKDNPVFYVQYGHARVNSVLRKARDEGFDVSDANLQGAELSAITHDADIALAKKLAEWPRLIEIAAKGHEPHRIAFYLYDLASEFHGLWNKGNDDPSLRFVQTGDIATTQAKIALIRAVQLVIASGLGILGVTPAEEMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LXP3</accession>
    <name>A0A1M5LXP3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ornithine-acyl[acyl carrier protein] N-acyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0517</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69419.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899041.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0517"/>
    <dbReference type="EnsemblBacteria" id="SHG69419">
        <property type="protein sequence ID" value="SHG69419"/>
        <property type="gene ID" value="SAMN05444003_0517"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG69419.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="253" mass="28062" checksum="3EF83974B17908AA" modified="2017-03-15" version="1">MTIAFTVGQYDVRFSVTPEDLTACQSLRHLCFFFEDGIDADRFDPLCRHLMVHKAGELVATCRLMLPTSGASIDMSYAAQRYDLSSLEPYQGRMLEIGRFCIAPTTSDPDVLRLCWGAIAQLVDLSDIGFIFGCTSFEGTDLEKYRQAFELLADSYGPPAYFPIESASNDCEDLESGLIYDRKVAVGQLPALLRSYLSLGAWVSDHAVVDREMNTIHVFTGLEVEKIPASKAQALRSIVPVERNPLAENAWVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LYG9</accession>
    <name>A0A1M5LYG9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Cysteine desulfurase</fullName>
            <ecNumber evidence="4">2.8.1.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_0548</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Seems to participate in the biosynthesis of the nitrogenase metalloclusters by providing the inorganic sulfur required for the Fe-S core formation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>[sulfur carrier]-H + L-cysteine = [sulfur carrier]-SH + L-alanine</text>
            <dbReference type="Rhea" id="RHEA:43892"/>
            <dbReference type="Rhea" id="RHEA-COMP:14737"/>
            <dbReference type="Rhea" id="RHEA-COMP:14739"/>
            <dbReference type="ChEBI" id="CHEBI:29917"/>
            <dbReference type="ChEBI" id="CHEBI:35235"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="ChEBI" id="CHEBI:64428"/>
            <dbReference type="EC" id="2.8.1.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <dbReference type="EC" id="2.8.1.7" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70107.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899089.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0548"/>
    <dbReference type="EnsemblBacteria" id="SHG70107">
        <property type="protein sequence ID" value="SHG70107"/>
        <property type="gene ID" value="SAMN05444003_0548"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031071">
        <property type="term" value="F:cysteine desulfurase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000192">
        <property type="entry name" value="Aminotrans_V_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016454">
        <property type="entry name" value="Cysteine_dSase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00266">
        <property type="entry name" value="Aminotran_5"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005572">
        <property type="entry name" value="NifS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aminotran_5" evidence="7">
        <location>
            <begin position="4"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="domain" description="Aminotran_5" evidence="7">
        <location>
            <begin position="135"/>
            <end position="330"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00003120"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013558"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG70107.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="344" mass="35583" checksum="1326C28FD3404424" modified="2017-03-15" version="1">MSRVYLDHNATTPLRAEARSAMIAAMDVAGNPSSVHAEGRAAKGILEKARQQVAAATGAGNADIVFTSGATEAAALAFGGRGLLASVMEHEAVLAWCAPSLQVSGVSVQVREPEASTLQLANSETGILQSLPKGLAVSDVTQAVGKIPVAYSWSGVEMMFLSAHKFGGPKGVGALILPQGHDLTAQLRGGGQEMGRRSGTENIIGIAGMGAAIEAADKALSDGQMDRLAQFRNILEKAIEDAVPDTIFVGKGAERLPNTSCFISPGWKGETQVMAMDLAGFAVSAGSACSSGKVKASKVLQALGYSNEDASCAVRVSLGVETTEDDVLRFAEAWTKKRLGRRAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M0S4</accession>
    <name>A0A1M5M0S4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Phosphatidate cytidylyltransferase</fullName>
            <ecNumber evidence="7">2.7.7.41</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_0583</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>a 1,2-diacyl-sn-glycero-3-phosphate + CTP + H(+) = a CDP-1,2-diacyl-sn-glycerol + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:16229"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <dbReference type="ChEBI" id="CHEBI:58332"/>
            <dbReference type="ChEBI" id="CHEBI:58608"/>
            <dbReference type="EC" id="2.7.7.41"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Phospholipid metabolism; CDP-diacylglycerol biosynthesis; CDP-diacylglycerol from sn-glycerol 3-phosphate: step 3/3.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the CDS family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.41" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70836.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899135.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0583"/>
    <dbReference type="EnsemblBacteria" id="SHG70836">
        <property type="protein sequence ID" value="SHG70836"/>
        <property type="gene ID" value="SAMN05444003_0583"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00557">
        <property type="reaction ID" value="UER00614"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004605">
        <property type="term" value="F:phosphatidate cytidylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016024">
        <property type="term" value="P:CDP-diacylglycerol biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000374">
        <property type="entry name" value="PC_trans"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01315">
        <property type="entry name" value="CDS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 9" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7 9" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 7 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="20"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="65"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="87"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="111"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="136"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="173"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="246"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003938"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG70836.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="268" mass="28467" checksum="2FE0A0CE62FE96D4" modified="2017-03-15" version="1">MPTDQTPPASKWDDLQVRLISAAGMLVVGLVAIYLGGAAFQLLVVFALGLMIWELTSLCDPERPNAAIVLAVMACAIGSVLHTLEGIYLIAVMLTPCILGAVFIGQRRQLFLVFSIAIFLATYSMVHFRNMFGADWIMWIILVIIASDTLGYLAGRAFGGPKFWPKISPKKTWSGTVAGWIGAAVVGAIFARYTNSGAALIVISALVAFAGQMGDIAESALKRRVGIKDSSDLIPGHGGLLDRFDAMLGATLVLGILIIGFGYTGVAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M2F4</accession>
    <name>A0A1M5M2F4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">tRNA-dihydrouridine synthase</fullName>
            <ecNumber evidence="10">1.3.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">SAMN05444003_0609</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 10">Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>a 5,6-dihydrouridine in tRNA + NAD(+) = a uridine in tRNA + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:54452"/>
            <dbReference type="Rhea" id="RHEA-COMP:13339"/>
            <dbReference type="Rhea" id="RHEA-COMP:13887"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:74443"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 5,6-dihydrouridine in tRNA + NADP(+) = a uridine in tRNA + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:23624"/>
            <dbReference type="Rhea" id="RHEA-COMP:13339"/>
            <dbReference type="Rhea" id="RHEA-COMP:13887"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:74443"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3 10">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the dus family.</text>
    </comment>
    <dbReference type="EC" id="1.3.1.-" evidence="10"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG71492.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0609"/>
    <dbReference type="EnsemblBacteria" id="SHG71492">
        <property type="protein sequence ID" value="SHG71492"/>
        <property type="gene ID" value="SAMN05444003_0609"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017150">
        <property type="term" value="F:tRNA dihydrouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02801">
        <property type="entry name" value="DUS_like_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1200.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035587">
        <property type="entry name" value="DUS-like_FMN-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001269">
        <property type="entry name" value="DUS_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024036">
        <property type="entry name" value="tRNA-dHydroUridine_Synthase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004652">
        <property type="entry name" value="tRNA_dU_NifR3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018517">
        <property type="entry name" value="tRNA_hU_synthase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01207">
        <property type="entry name" value="Dus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006621">
        <property type="entry name" value="Dus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00737">
        <property type="entry name" value="nifR3_yhdG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01136">
        <property type="entry name" value="UPF0034"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 10" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="6 10" id="KW-0288">FMN</keyword>
    <keyword evidence="9 10" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="7 10" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="Dus" evidence="12">
        <location>
            <begin position="21"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="11">
        <location>
            <position position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001183"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00002790"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRNR" id="PIRNR006621"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR006621-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF01207"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHG71492.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="332" mass="35474" checksum="F83455C2500A7A55" modified="2017-03-15" version="1">MQTLKSEIKIGSLTVSPPVALAPLAGITDLPFRQLVSSFGAGWVVSEMVASQEMVQAKPGVRERAELGFDQSGTSVQIAGREGKWMAEAARMIEANGAALIDINMGCPAKKVTNGYSGSALLKTPDHALSLIEAVVQAVDIPVTLKTRLGWDHDFLNAADVAKRAEDAGIQLVTIHGRTRCQFYKGSADWAAIRAIKEAVSIPVIANGDIVDATTAKEALIQSGADGVMIGRGAQGKPWMIAQVAAELFGTPAPELPKGKELIAMVCDHYEAMLRFYGEELGGKVSRKHLGWYMDDANTSPALRKAILTSRSSKEVLRMLPDALTYETEVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M3L6</accession>
    <name>A0A1M5M3L6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Amino acid/amide ABC transporter substrate-binding protein, HAAT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0625</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG71922.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899183.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0625"/>
    <dbReference type="EnsemblBacteria" id="SHG71922">
        <property type="protein sequence ID" value="SHG71922"/>
        <property type="gene ID" value="SAMN05444003_0625"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028081">
        <property type="entry name" value="Leu-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13458">
        <property type="entry name" value="Peripla_BP_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009912207" evidence="1">
        <location>
            <begin position="21"/>
            <end position="396"/>
        </location>
    </feature>
    <feature type="domain" description="Peripla_BP_6" evidence="2">
        <location>
            <begin position="25"/>
            <end position="332"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG71922.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="396" mass="39775" checksum="468E4AF6FF71EBDC" modified="2017-03-15" version="1">MKKLMMASAATALMASGAFADGHSEIKMGVILGFTGPIESLTPPMADGAELAMKEVTDSGLLLGGSSVTSVRADSTCIDAGAATAAAERLVSADGVKGIMGADCSGVTGAILSNVALANGMVMISPSATSPALSSPDDNGLFFRTAPSDARQGVVMTEVLMEEGIMEVAVTYTNNDYGKGLADSFQAAFEAAGGTVTISAAHEDGKADYSAEVGALAAAGGERLVVAGYVDQGGAGIVRSALDTGAFDTFHFPDGMIGASLSEQFGDEIEGSTGQVPGTDSPGVAAFAELVGDAFDATSPFTPESYDAAALIMLAMQAAGSAEPADYVSKIEMVANAPGEQIFPGELAKALQILADGGDIDYVGASAVELVNGGESAGNYRQIVIEGGEISTVKFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M4B6</accession>
    <name>A0A1M5M4B6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Phosphate ABC transporter substrate-binding protein, PhoT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0634</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899201.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0634"/>
    <dbReference type="EnsemblBacteria" id="SHG72154">
        <property type="protein sequence ID" value="SHG72154"/>
        <property type="gene ID" value="SAMN05444003_0634"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024370">
        <property type="entry name" value="PBP_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12849">
        <property type="entry name" value="PBP_like_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013064708" evidence="1">
        <location>
            <begin position="24"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="domain" description="PBP_domain" evidence="2">
        <location>
            <begin position="18"/>
            <end position="310"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG72154.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="344" mass="36228" checksum="3EEC61A5AC4E5DFB" modified="2017-03-15" version="1">MSFMKLTASSLAIAAVSATSAAARDNVQVAGSSTVLPYASIVAEAFGENFDFPTPVVESGGSSAGLKRFCEGVGENTIDIANASRAIREKEIVACAEAGVTDIIEVRIGYDGIVFASQIDGPEYTAFTQSDLFNALAPKVMVDGELVDNPHTKWSDFNADLPDAEILAFIPGTKHGTREVFEENVIAVGCEETGAHDAMIAGGMSEDEAEDACLAVIGDGRSVDIDGDYTETLARIDANSNGIGVFGLAFYENNTDKLKVATMAGVEPSTESISTGEYPVSRPLFFYIKAAHIGVIPGLKEFAEFFVADEIAGPDGPLAEYGLVSDPALADTQMMISDEQTMTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M817</accession>
    <name>A0A1M5M817_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Methyltransferase domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0687</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73400.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899297.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0687"/>
    <dbReference type="EnsemblBacteria" id="SHG73400">
        <property type="protein sequence ID" value="SHG73400"/>
        <property type="gene ID" value="SAMN05444003_0687"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG73400.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="204" mass="22156" checksum="818E2F168C2A4D9E" modified="2017-03-15" version="1">MTDKNVLRPQLWKPRTVEETISVYADWADTYDKEVTERGYKTPARLADVLAKFADKQSLVLDFGCGTGISGAALKTLGFEHLHGTDITAEMLDKATASGLYEKTWLSTAGDMDFEQGSYEVIVAVGVVSLGAAPPETLSALIDKLGIGGYLAFSYNGPTLEDGSYVKALDDEIASGRVECLFRKNGPHLEDVGMNSDIIVLRRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M894</accession>
    <name>A0A1M5M894_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Phosphoribosyl-AMP cyclohydrolase</fullName>
            <shortName evidence="7">PRA-CH</shortName>
            <ecNumber evidence="7">3.5.4.19</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">hisI</name>
        <name evidence="9" type="ORF">SAMN05444003_0689</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>1-(5-phospho-beta-D-ribosyl)-5'-AMP + H2O = 1-(5-phospho-beta-D-ribosyl)-5-[(5-phospho-beta-D-ribosylamino)methylideneamino]imidazole-4-carboxamide</text>
            <dbReference type="Rhea" id="RHEA:20049"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:58435"/>
            <dbReference type="ChEBI" id="CHEBI:59457"/>
            <dbReference type="EC" id="3.5.4.19"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="7">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="7">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 7">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 3/9.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the PRA-CH family.</text>
    </comment>
    <dbReference type="EC" id="3.5.4.19" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73448.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899301.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0689"/>
    <dbReference type="EnsemblBacteria" id="SHG73448">
        <property type="protein sequence ID" value="SHG73448"/>
        <property type="gene ID" value="SAMN05444003_0689"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00008"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004635">
        <property type="term" value="F:phosphoribosyl-AMP cyclohydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.810">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01021">
        <property type="entry name" value="HisI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026660">
        <property type="entry name" value="PRA-CH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002496">
        <property type="entry name" value="PRib_AMP_CycHydrolase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038019">
        <property type="entry name" value="PRib_AMP_CycHydrolase_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01502">
        <property type="entry name" value="PRA-CH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141734">
        <property type="entry name" value="SSF141734"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="3 7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 7" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="5 7 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="PRA-CH" evidence="8">
        <location>
            <begin position="30"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="77"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="78"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="79"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="81"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="94"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="101"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01021"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01502"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG73448.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="119" mass="13392" checksum="A59FDFF5FA08EF2F" modified="2017-03-15" version="1">MKFDPATLTYNDAGLIPAIAQDAKSGEVLMMAWMNAESIQQTLETRQVTYWSRSRQEFWVKGATSGHTQALVDFKIDCDRDCILVEVNQEGPACHTGRRSCFYTAIESGEEVEILKPMI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M8F9</accession>
    <name>A0A1M5M8F9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="10 11">DNA ligase</fullName>
            <ecNumber evidence="10 11">6.5.1.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Polydeoxyribonucleotide synthase [NAD(+)]</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">ligA</name>
        <name evidence="13" type="ORF">SAMN05444003_0693</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="10">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the NAD-dependent DNA ligase family. LigA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="6.5.1.2" evidence="10 11"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73532.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0693"/>
    <dbReference type="EnsemblBacteria" id="SHG73532">
        <property type="protein sequence ID" value="SHG73532"/>
        <property type="gene ID" value="SAMN05444003_0693"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003911">
        <property type="term" value="F:DNA ligase (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00114">
        <property type="entry name" value="LIGANc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01588">
        <property type="entry name" value="DNA_ligase_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001357">
        <property type="entry name" value="BRCT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036420">
        <property type="entry name" value="BRCT_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041663">
        <property type="entry name" value="DisA/LigA_HHH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018239">
        <property type="entry name" value="DNA_ligase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033136">
        <property type="entry name" value="DNA_ligase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001679">
        <property type="entry name" value="DNAligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013839">
        <property type="entry name" value="DNAligase_adenylation"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013840">
        <property type="entry name" value="DNAligase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004150">
        <property type="entry name" value="NAD_DNA_ligase_OB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010994">
        <property type="entry name" value="RuvA_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004149">
        <property type="entry name" value="Znf_DNAligase_C4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00533">
        <property type="entry name" value="BRCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01653">
        <property type="entry name" value="DNA_ligase_aden"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03120">
        <property type="entry name" value="DNA_ligase_OB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03119">
        <property type="entry name" value="DNA_ligase_ZBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12826">
        <property type="entry name" value="HHH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001604">
        <property type="entry name" value="LigA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00292">
        <property type="entry name" value="BRCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00532">
        <property type="entry name" value="LIGANc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47781">
        <property type="entry name" value="SSF47781"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52113">
        <property type="entry name" value="SSF52113"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00575">
        <property type="entry name" value="dnlj"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50172">
        <property type="entry name" value="BRCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01055">
        <property type="entry name" value="DNA_LIGASE_N1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01056">
        <property type="entry name" value="DNA_LIGASE_N2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 10 11" id="KW-0227">DNA damage</keyword>
    <keyword evidence="8 10 11" id="KW-0234">DNA repair</keyword>
    <keyword evidence="2 10 11" id="KW-0235">DNA replication</keyword>
    <keyword evidence="1 10 11" id="KW-0436">Ligase</keyword>
    <keyword evidence="6 10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="9 10" id="KW-0464">Manganese</keyword>
    <keyword evidence="3 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7 10 11" id="KW-0520">NAD</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 10" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="BRCT" evidence="12">
        <location>
            <begin position="640"/>
            <end position="713"/>
        </location>
    </feature>
    <feature type="active site" description="N6-AMP-lysine intermediate" evidence="10">
        <location>
            <position position="141"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="56"/>
            <end position="60"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="105"/>
            <end position="106"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="139"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="162"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="197"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="313"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="337"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="442"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="445"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="466"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01588"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU000618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHG73532.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="719" mass="77704" checksum="9EFB7350B4E1F1B5" modified="2017-03-15" version="1">MTTKVERSSVDLGRLLILDPSVVSETDVAGLLEDLSSILNLANTEYHTEDAPTLSDADYDTLKRLNTALETRFPQLQRADSPTHQVGAPVSDGFGKVKHAVRMLSLGNAFEEEDVEDFSNGVRKFLGLGESVPLAFTAEPKIDGLSLSLRYENGQLVQAATRGDGETGENVTANAKTIDDVPHTLTGAPEVLEVRGEVYMSHEDFAALNARQTEKGDKVFANPRNAAAGSLRQLDATITKSRPLKFFAYAWGDLSTPLASTQSAAIQRLADLGFSINLLTKTCNTTAELLAHYHHIEVNRADLGYDIDGVVYKVDDLALQNRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLEPITVGGVVVSNATLHNEDYIAGRDGNGEPIREGRDIRVGDWVQVYRAGDVIPKINDVDLKRRPDDATPFEFPHRCPECNSPAVREAGDAVHRCTGGLICPAQAVERLKHFVGRAAFDIEGLGSKQVEQFYSDGWVQTPADIFRLRERYGDGLQQLKNREGWGERSANNLFDAIDEKRKIPLNRVIFALGIRHVGETAGSILAKHYGSWSNFADAMDAAKIGIGMSWDDLISIDGVGAVMAESVLTAMQHPSERDSIDALVAQLDIEDVAAPDTSDSPVAGKTVVFTGTLEKMTRAEAKARAEALGAKVSGSVSSKTDILVAGPGAGSKAKKAADLGVETIDEDGWLALIGDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MC60</accession>
    <name>A0A1M5MC60_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">N-acetylglutamate synthase, GNAT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0735</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74489.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG74489">
        <property type="protein sequence ID" value="SHG74489"/>
        <property type="gene ID" value="SAMN05444003_0735"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="3"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG74489.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="150" mass="16861" checksum="0F7EF7128E031CC2" modified="2017-03-15" version="1">MPKDIRRAAQDELPAVLDLIQRQFAYMDDRIDPPSSMYRLTVEGLTQTDVWVAGDPICACMVLTPVSDHLHLGKVAIEPAYRGQGLLEELVNRAEDVARELRLNTIQLESRIELKEVHRAFAKVGFQEVRTGAHDGYAKDTFIVMEKAVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MDY1</accession>
    <name>A0A1M5MDY1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0784</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75550.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899456.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG75550">
        <property type="protein sequence ID" value="SHG75550"/>
        <property type="gene ID" value="SAMN05444003_0784"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="73"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG75550.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="98" mass="10780" checksum="99A863CB764B7DDF" modified="2017-03-15" version="1">MTLISFISVLTLVVGFIIPLRWGVFGFLGGALLLFVVQAGINTSMGFEGTSIEESLLLFNGSYASYIGFNLQITYRAFAIPLLLLGAVMVYRHSLRRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MG03</accession>
    <name>A0A1M5MG03_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 4">Phosphate acyltransferase</fullName>
            <ecNumber evidence="3 4">2.3.1.274</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Acyl-ACP phosphotransacylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Acyl-[acyl-carrier-protein]--phosphate acyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Phosphate-acyl-ACP acyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">plsX</name>
        <name evidence="5" type="ORF">SAMN05444003_0811</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 4">
            <text>a fatty acyl-[ACP] + phosphate = an acyl phosphate + holo-[ACP]</text>
            <dbReference type="Rhea" id="RHEA:42292"/>
            <dbReference type="Rhea" id="RHEA-COMP:9685"/>
            <dbReference type="Rhea" id="RHEA-COMP:14125"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:59918"/>
            <dbReference type="ChEBI" id="CHEBI:64479"/>
            <dbReference type="ChEBI" id="CHEBI:138651"/>
            <dbReference type="EC" id="2.3.1.274"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4">Lipid metabolism; phospholipid metabolism.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer. Probably interacts with PlsY.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="4">Associated with the membrane possibly through PlsY.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the PlsX family.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.274" evidence="3 4"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76176.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899489.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0811"/>
    <dbReference type="EnsemblBacteria" id="SHG76176">
        <property type="protein sequence ID" value="SHG76176"/>
        <property type="gene ID" value="SAMN05444003_0811"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00085"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043811">
        <property type="term" value="F:phosphate:acyl-[acyl carrier protein] acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008654">
        <property type="term" value="P:phospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00019">
        <property type="entry name" value="PlsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003664">
        <property type="entry name" value="FA_synthesis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012281">
        <property type="entry name" value="Phospholipid_synth_PlsX-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30100">
        <property type="entry name" value="PTHR30100"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02504">
        <property type="entry name" value="FA_synthesis"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002465">
        <property type="entry name" value="Phsphlp_syn_PlsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00182">
        <property type="entry name" value="plsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="2 4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="4" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="4" id="KW-0594">Phospholipid biosynthesis</keyword>
    <keyword evidence="4" id="KW-1208">Phospholipid metabolism</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001232"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00024069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG76176.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="372" mass="39541" checksum="A9018999FBFC6484" modified="2017-03-15" version="1">MTPSQTDTAPTAPDASHVISVDAMGGDKGPATVVAGLSMFLRNFPQARAILHGPEDELRKLLERRGISDRVKIQHAEDVVQMTDKPSNVLRHGKKTSMWSAVEAVRNEEAGVCVSCGNTGGLMAISMMRLRKAEGVNRPAIACLWPSRNKQGFNVMLDAGADIRADQDDLLTYALMGASYARNAFDLERPRIGLLNVGVEEHKGRAELKVAHDLIGRSADRGEFDYVGFVEGGDMPSDKIDVIVTDGFTGNVALKTGEGTATLISEFLRSALMRNPVSMFGAVLARGSLDRLRKRIDPRSVNGGVFLGLNKTVVKSHGGADATGISAALQLAYRLAQSGFSNKLAARVASAASLAQDAIQEGEAAKAAEAGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MGU5</accession>
    <name>A0A1M5MGU5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0822</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76456.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900404.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0822"/>
    <dbReference type="EnsemblBacteria" id="SHG76456">
        <property type="protein sequence ID" value="SHG76456"/>
        <property type="gene ID" value="SAMN05444003_0822"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012093057" evidence="1">
        <location>
            <begin position="17"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG76456.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="161" mass="17227" checksum="CDBEFD8F7104F878" modified="2017-03-15" version="1">MRPVLPMVLAASLAVAGCSQISQSWFNPLNWFGGSETVANEDGTVVLRPLVPENAGDRVIDARTLIGSVVDLSVDRTPDGAIVRATGTTTAPSQFNAELVPTSIENGVLNLAFRVQTPATATTAQREPRQITAAYLVDNQLLSQIRSIQVQGSQNSRISRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MLM2</accession>
    <name>A0A1M5MLM2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 8">Acetolactate synthase</fullName>
            <ecNumber evidence="4 8">2.2.1.6</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">SAMN05444003_0879</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>H(+) + 2 pyruvate = (2S)-2-acetolactate + CO2</text>
            <dbReference type="Rhea" id="RHEA:25249"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:58476"/>
            <dbReference type="EC" id="2.2.1.6"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="8">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </cofactor>
        <text evidence="8">Binds 1 thiamine pyrophosphate per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 8">Amino-acid biosynthesis; L-isoleucine biosynthesis; L-isoleucine from 2-oxobutanoate: step 1/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Amino-acid biosynthesis; L-valine biosynthesis; L-valine from pyruvate: step 1/4.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the TPP enzyme family.</text>
    </comment>
    <dbReference type="EC" id="2.2.1.6" evidence="4 8"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77809.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899588.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0879"/>
    <dbReference type="EnsemblBacteria" id="SHG77809">
        <property type="protein sequence ID" value="SHG77809"/>
        <property type="gene ID" value="SAMN05444003_0879"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00047">
        <property type="reaction ID" value="UER00055"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00049">
        <property type="reaction ID" value="UER00059"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003984">
        <property type="term" value="F:acetolactate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009099">
        <property type="term" value="P:valine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd02015">
        <property type="entry name" value="TPP_AHAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012846">
        <property type="entry name" value="Acetolactate_synth_lsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039368">
        <property type="entry name" value="AHAS_TPP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012000">
        <property type="entry name" value="Thiamin_PyroP_enz_cen_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012001">
        <property type="entry name" value="Thiamin_PyroP_enz_TPP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045229">
        <property type="entry name" value="TPP_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011766">
        <property type="entry name" value="TPP_enzyme-bd_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18968">
        <property type="entry name" value="PTHR18968"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02775">
        <property type="entry name" value="TPP_enzyme_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00205">
        <property type="entry name" value="TPP_enzyme_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02776">
        <property type="entry name" value="TPP_enzyme_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="SSF52467"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00118">
        <property type="entry name" value="acolac_lg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7 8" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0786">Thiamine pyrophosphate</keyword>
    <keyword evidence="6 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TPP_enzyme_N" evidence="11">
        <location>
            <begin position="5"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="domain" description="TPP_enzyme_M" evidence="9">
        <location>
            <begin position="194"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="domain" description="TPP_enzyme_C" evidence="10">
        <location>
            <begin position="396"/>
            <end position="543"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005025"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007812"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003591"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF02776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG77809.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="584" mass="63905" checksum="0FC9AE618379B595" modified="2017-03-15" version="1">MSKTMTGAKMVVQALVDQGVEVVFGYPGGAVLPIYDEIFQQNHIQHILVRHEQGAVHAAEGYARSTGKPGVALVTSGPGATNAVTGLTDALMDSIPIIVLTGQVPTFMIGSDAFQEADTVGITRPCTKHNWLVKETDRLAATMHEAFHVATSGRPGPVLIDIPKDVQFATGKYTEARQVETHYAPQVKGDLDAITELAKAMETAKRPIFYTGGGVINSGPAASQLLRELVAETNFPITSTLMGLGCYPASGENWLGMLGMHGLYEANMAMHDCDLMINIGARFDDRITGLVDKFSPGSKKAHIDIDASSINKVIRVDIPILGDVAHVLEDLLKVWKSRGRKTNKEGLSKWWDQINEWKQVDCLKFKQEGKTIKPQHAVARLEALTKSHDRYICTEVGQHQMWAAQYLGFEDPNRWMTSGGLGTMGYGFPASVGVQLAHRDALVINVAGEASWLMNMQELGTAVQYNLPVKQFILNNERLGMVRQWQELLHGERYSQSWSEALPDFVKLAEAFGAKGIMVSDPDDLDDAIMEMINHDGPVLFDCLIEKHENCFPMIPSGKPHNEMLLGENADTTNAIQAGGAVMV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MM94</accession>
    <name>A0A1M5MM94_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Fructose-bisphosphate aldolase</fullName>
            <ecNumber evidence="3">4.1.2.13</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Fructose-bisphosphate aldolase class I</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0889</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-glucose: step 4/4.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the class I fructose-bisphosphate aldolase family.</text>
    </comment>
    <dbReference type="EC" id="4.1.2.13" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78039.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0889"/>
    <dbReference type="EnsemblBacteria" id="SHG78039">
        <property type="protein sequence ID" value="SHG78039"/>
        <property type="gene ID" value="SAMN05444003_0889"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00183"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004332">
        <property type="term" value="F:fructose-bisphosphate aldolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000741">
        <property type="entry name" value="FBA_I"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11627">
        <property type="entry name" value="PTHR11627"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00274">
        <property type="entry name" value="Glycolytic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013068"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00029799"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG78039.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="303" mass="32770" checksum="7AFA2441040A8E88" modified="2017-03-15" version="1">MLDTSSMPNQEQLDQIKSGNGFIAALDQSGGSTPKALRLYGVEEDAYSNDAEMFDLIHQMRSRIINAPSFTGEKVVGAILFEMTMDRMIGDKPSAQALWDENGVVPFLKVDKGLEDIKDGVQMMKPIDGLDDTLGRAVNAGMFGTKMRSVISEANAEGIAANVEQQFEIAKQIAGHGLVAIVEPEVTISIDDKAEAENLLLAELSKQLDAWDDDVPVMLKLTLPEVAGHYQPCVDHPNVLRVVALSGGYDRTEANRRLAQNNGVIASFSRALTEGLSAQQNEEDFNGMLANTIDEIQAASMAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MQB3</accession>
    <name>A0A1M5MQB3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Multidrug efflux pump</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0957</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79481.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899704.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0957"/>
    <dbReference type="EnsemblBacteria" id="SHG79481">
        <property type="protein sequence ID" value="SHG79481"/>
        <property type="gene ID" value="SAMN05444003_0957"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2090.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027463">
        <property type="entry name" value="AcrB_DN_DC_subdom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001036">
        <property type="entry name" value="Acrflvin-R"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32063">
        <property type="entry name" value="PTHR32063"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00873">
        <property type="entry name" value="ACR_tran"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00702">
        <property type="entry name" value="ACRIFLAVINRP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82714">
        <property type="entry name" value="SSF82714"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="336"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="362"/>
            <end position="381"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="387"/>
            <end position="411"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="432"/>
            <end position="452"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="464"/>
            <end position="489"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="510"/>
            <end position="532"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="552"/>
            <end position="576"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="588"/>
            <end position="616"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="998"/>
            <end position="1018"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="1025"/>
            <end position="1045"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="1051"/>
            <end position="1073"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="1100"/>
            <end position="1120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="1140"/>
            <end position="1158"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1213"/>
            <end position="1241"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1215"/>
            <end position="1229"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG79481.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="1241" mass="134166" checksum="FF570CF54776C16A" modified="2017-03-15" version="1">MTGIVDWAASRARMVIAFIVLSLTAGAMAYVGLPKEGEPDIEIPAIFVSVPFPGISAADSETLLVKPMETELADLDGLKTMSSTAAEGYAGVALEFEFGWNKTKVLADIRDAMNSAEGAFPQGAENYSINEINFSEFPIVIVNLTGQVPERTLVRVAKELQDRIESLDAVLEAGLAGQRDEMLEVTIDPLKLESYNVTAGELINVVTQNNLLIAAGEVETEQGTFAVKIPSSFSESQDVYNLPVKQNGDSVVTLGDLATIKMTFEDREGTARFNGTNTVALQVVKRKGFNLIDTAELVKQTVEEERATWSPELQAAIQVGTSNDQSRNVASMVSQLEGSVLTAIALVMIVVLAALGTRPALLVGFAIPTSFLLCFALLAIMEITISNIVMFGLILAVGMLVDGAIVVVEYADKRIKDGSGPMAAYTEAAKRMFWPIISSTATTLCAFLPMLFWPGVPGQFMGMLPVTLIFVLSASLVVALIYLPVMGGVTGRLSRMFSGASDWLRASFPWVIRAALVPVALMTVFAGAMLTLNPGYFSGEAVQTDGLVASLPGIALFLTGAVFASITMGAAAIRWERKKVDAGYHRSLFGYFIAFITKNPIMPVVTIGAVVAFVMYTFTTFGANNNGVEFFVETEPEQAIVYVQARGNLSVTEKDDLVKQVEDVVIAHPAVQSAFSFAGQGGLDNNTGGAQGPADEIGQVQLEMVPWDERPVVERETTLLGFIPWTTTEVDPAFDGNAVIAELEEDLALIPGIRFEVLNLAMGPASAKPVHLRIKGNDWEELLAATTLAREQFDNLDGLAQQEDTLPLPGIDWQIDVDVESAGRYGADVATVGGMVQLVTRGILLDTYTPADGDEEIEIRVRLPEEDRVLSTLEDLKVRTPTGLVPLSNFTTITPVEKLAEISRVDQQRYFDVKAAVDSGLVKLTDGTGQTTVVTEEVYDQSDDLQRQVNSGDLTMTVVSPTERIETLTEWLETDPFPASISWEWTGDQEDQAESGQFLMVAFSGALGLMFIILLAQFNSIYNSLLVLMAVVMSTAGVLWGMLIMDQAFSIIMTGTGIVALAGIVVNNNIILIDTYQEYSRYMPKAEAIVRTAEARIRPVLLTTITTMAGLAPMMFGLSLDFFGGGYSVDSPTALWWKQLATAVVFGLGTATVLTLVFTPSMLALRVWASAGAYGFINTLQAGFFGRVGRTRRSDFRLNRSARKLKSPQIIWEDDEPVEVSDTDEDDPDITSTVTPLQAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MRY4</accession>
    <name>A0A1M5MRY4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">LysM domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0960</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79543.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0960"/>
    <dbReference type="EnsemblBacteria" id="SHG79543">
        <property type="protein sequence ID" value="SHG79543"/>
        <property type="gene ID" value="SAMN05444003_0960"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00118">
        <property type="entry name" value="LysM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018392">
        <property type="entry name" value="LysM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036779">
        <property type="entry name" value="LysM_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01476">
        <property type="entry name" value="LysM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00257">
        <property type="entry name" value="LysM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51782">
        <property type="entry name" value="LYSM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LysM" evidence="2">
        <location>
            <begin position="450"/>
            <end position="499"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="280"/>
            <end position="307"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG79543.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="504" mass="52479" checksum="6F5E20F2B6D871B3" modified="2017-03-15" version="1">MASNSGQLALGALAAAVVGIGVVWLVPRPETAVVAPVEEAVAVPAEEGAVASGEGAAVSTTDEVAEAQTEAVETSPEEDVVAGVEVPTVGMRVEGDGIMVVTGRAIGASDLDILLDGEALERVLVGANGDFATVLSVPPSSQGRILSVIADPDGEAIASVENPLILPSVEQEPLIEDEVVVAGAVTSVDEGDLAEAADATEETPTEVVDLATDQSEAEDTTNTEVASEDAEVELEQLAEADAPDAVEELAEVQEPAEVVENTDLVSEEEALADASESPAIEENVAEIEETETVVAEAEATASEAASEADTQVEVTDATSTAEQTETQLVADEDGVRVVSTGPQVLSNVALDSISYDPTGAVLLTGRATGEGFVQVYVDNQPVTTSRITEGGDWRTDLPEVDTGVYTLRIDEVDAEGEVVSRIETPFKREEPEAVAAVLAEETAEDDFKVAVRTVQPGATLWAIAREQFGEGILYVAVYEANKDQIRDPDLIYPGQVFKIPELSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MU36</accession>
    <name>A0A1M5MU36_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">3-methylcrotonyl-CoA carboxylase beta subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1023</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80818.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899763.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1023"/>
    <dbReference type="EnsemblBacteria" id="SHG80818">
        <property type="protein sequence ID" value="SHG80818"/>
        <property type="gene ID" value="SAMN05444003_1023"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034733">
        <property type="entry name" value="AcCoA_carboxyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011763">
        <property type="entry name" value="COA_CT_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011762">
        <property type="entry name" value="COA_CT_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045190">
        <property type="entry name" value="MCCB/AccD1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22855">
        <property type="entry name" value="PTHR22855"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01039">
        <property type="entry name" value="Carboxyl_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50989">
        <property type="entry name" value="COA_CT_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50980">
        <property type="entry name" value="COA_CT_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CoA carboxyltransferase N-terminal" evidence="1">
        <location>
            <begin position="6"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="domain" description="CoA carboxyltransferase C-terminal" evidence="2">
        <location>
            <begin position="269"/>
            <end position="511"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG80818.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="519" mass="55498" checksum="58FE6110CB091136" modified="2017-03-15" version="1">MSREQHLEALSLVQSAANAAAAGGGEKSRERHLSRGKMLPRDRVANLLDAGSPFLEVGATAAHGMYDGAAPCAGVVAGVGRVHGQEVMVVCNDATVKGGTYYPMTVKKHLRAQEIAEQCRLPCVYLVDSGGANLPNQDEVFPDREHFGRIFYNQAQMSAKGIPQIATVMGSCTAGGAYVPAMADVSIIVKEQGTIFLAGPPLVKAATGEVVSAEDLGGGDVHTRLSGVADYLAEDDAHALALARQAVASCALDKAVSLKRETPELPALDPDGLIDVVPADLRTPYDIREVIKRIVDGSRFDEFKARFGETLVTGFAHIEGWPCGIIANNGVLFSEAAQKGAHFMELCSQRKIPLIFLQNITGFMVGQKYENEGIARHGAKMVTAVATTKVPKITMVVGGSYGAGNYGMAGRAYSPNFMWSWPTSRTAVMGGEQAAGVLATVRRDAIERKGGDWSAEDEVAFKQPTIDMFEEQSHPLYASARLWDDGIIDPRKSREVLALSLSASLNAPIEDTQFGVFRM</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MVF8</accession>
    <name>A0A1M5MVF8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 15">NAD(P) transhydrogenase subunit beta</fullName>
            <ecNumber evidence="6 15">7.1.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="15">Nicotinamide nucleotide transhydrogenase subunit beta</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="18" type="ORF">SAMN05444003_1048</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="18 19" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18 19">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 15">The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 15">
            <text>H(+)(in) + NAD(+) + NADPH = H(+)(out) + NADH + NADP(+)</text>
            <dbReference type="Rhea" id="RHEA:47992"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="7.1.1.1"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell inner membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5 15">Belongs to the PNT beta subunit family.</text>
    </comment>
    <dbReference type="EC" id="7.1.1.1" evidence="6 15"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81330.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899786.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1048"/>
    <dbReference type="EnsemblBacteria" id="SHG81330">
        <property type="protein sequence ID" value="SHG81330"/>
        <property type="gene ID" value="SAMN05444003_1048"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008750">
        <property type="term" value="F:NAD(P)+ transhydrogenase (AB-specific) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012136">
        <property type="entry name" value="NADH_DH_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034300">
        <property type="entry name" value="PNTB-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02233">
        <property type="entry name" value="PNTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000204">
        <property type="entry name" value="PNTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="SSF52467"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 15" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="8 15" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="14 15 16" id="KW-0472">Membrane</keyword>
    <keyword evidence="15" id="KW-0520">NAD</keyword>
    <keyword evidence="11 15" id="KW-0521">NADP</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12 15" id="KW-1278">Translocase</keyword>
    <keyword evidence="10 16" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="13 16" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="33"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="56"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="86"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="145"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="187"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="212"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="239"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="263"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="domain" description="PNTB" evidence="17">
        <location>
            <begin position="8"/>
            <end position="480"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00007919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00014581"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="PIRNR" id="PIRNR000204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="Pfam" id="PF02233"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="SHG81330.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="484" mass="50440" checksum="57FDDFABE385557B" modified="2017-03-15" version="1">MENAFTIAAYVVAAILFILSLGGLSGQESAKRAVWYGIVGMAIAVLATLFGPGSGLWLASLVLIAGGAVVGYQLATKVQMTQMPELVAIMHSLVGLAAVFVGFNADFTITQVADLKAAGDTVTGSFAELVAKKTPIEITILQIELVLGVWIGAVTFTGSVIAYGKLSGNSSLLPFKIDTAAKQFPGGHMLNAGAAALSIIFAIWYFNGGGFGALFLLTLLALFIGYHLIMGIGGADMPVVVSMLNSYSGWAAAAIGFSLGNDLLIVVGALVGSSGAILSYIMCKAMNRSFVSVILGGFGGATGEQMAVEGEQVAIDADGVATALNEADSVIIIPGYGMAVAQAQTAVAELVRKLRAKGKEVRFAIHPVAGRLPGHMNVLLAEAKVPYDIVMEMDEINDDFPDTDVAIVIGSNDIVNPAAQDDPNSPIAGMPVLECWKAKQVFVSKRGQGTGYSGIENPLFFKENTRMFYGDAKASLDSLLPKID</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MXD8</accession>
    <name>A0A1M5MXD8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">ABC_trans_aux domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1059</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1059"/>
    <dbReference type="EnsemblBacteria" id="SHG81569">
        <property type="protein sequence ID" value="SHG81569"/>
        <property type="gene ID" value="SAMN05444003_1059"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005586">
        <property type="entry name" value="ABC_trans_aux"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03886">
        <property type="entry name" value="ABC_trans_aux"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012702867" description="ABC_trans_aux domain-containing protein" evidence="1">
        <location>
            <begin position="22"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="domain" description="ABC_trans_aux" evidence="2">
        <location>
            <begin position="40"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03886"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG81569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="186" mass="19809" checksum="331C7F79F392EC5E" modified="2017-03-15" version="1">MMKFLSPLFLAALVACTSAPANRLEFSPVSSELRIRALVGSVMVRTVSLPTYAASEEVAVEISPGVIGTSADILWADDPERAVTLSMTQQLDEILNATVGPEPWPFVGLPDVAVDVRVTQMLAGTDGSFRLSGQYFVGGDGISFRNSSHSFDIVEPLSGEGSQAIANAKARAVLRLSEDIARRLGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N2X4</accession>
    <name>A0A1M5N2X4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Glutamate dehydrogenase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_1160</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3 7">Belongs to the Glu/Leu/Phe/Val dehydrogenases family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83910.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899881.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1160"/>
    <dbReference type="EnsemblBacteria" id="SHG83910">
        <property type="protein sequence ID" value="SHG83910"/>
        <property type="gene ID" value="SAMN05444003_1160"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004353">
        <property type="term" value="F:glutamate dehydrogenase [NAD(P)+] activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006520">
        <property type="term" value="P:cellular amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01076">
        <property type="entry name" value="NAD_bind_1_Glu_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046346">
        <property type="entry name" value="Aminiacid_DH-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006095">
        <property type="entry name" value="Glu/Leu/Phe/Val_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006096">
        <property type="entry name" value="Glu/Leu/Phe/Val_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006097">
        <property type="entry name" value="Glu/Leu/Phe/Val_DH_dimer_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014362">
        <property type="entry name" value="Glu_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033922">
        <property type="entry name" value="NAD_bind_Glu_DH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00208">
        <property type="entry name" value="ELFV_dehydrog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02812">
        <property type="entry name" value="ELFV_dehydrog_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000185">
        <property type="entry name" value="Glu_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00082">
        <property type="entry name" value="GLFDHDRGNASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00839">
        <property type="entry name" value="ELFV_dehydrog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53223">
        <property type="entry name" value="SSF53223"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0520">NAD</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2 3 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ELFV_dehydrog" evidence="8">
        <location>
            <begin position="191"/>
            <end position="478"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="4">
        <location>
            <position position="110"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="74"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="98"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="198"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="237"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="367"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Important for catalysis" evidence="6">
        <location>
            <position position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRNR" id="PIRNR000185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000185-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000185-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000185-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU004417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG83910.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="479" mass="52681" checksum="644DB88008B0518D" modified="2017-03-15" version="1">MASSSSPKEPSFRESVDIMFNRAVALMGLPPGLEEKIRVCNATYTVRFGVRLRGDIHTFVGYRSVHSEHMEPVKGGIRYAGNVDQDEVEALAALMTYKCALVEAPFGGSKGGLCIDPREWDEHELEMITRRFAYELAKRDLIHPSQNVPAPDMGTGEREMAWIADQYRRMNTTDINSAACVTGKPPNAGGIAGRVEATGRGVQYALQEFFRHPEDIAAAGLKGTLKDKRIIVQGLGNVGFHAAKFLSEEDGAKITGIIERDGALRDDTGLDVEAVRAWIAENGGVKGYDEALYLEEGSALLEEECDILIPAALEGVINLSNADRVKAPLIIEAANGPVTAGADEILRDKGCVIIPDMYANAGGVTVSYFEWVKNLSHIRFGRMQRRAEESRHQLVVDELERLSSDTGIGWELSPDFKEKYLRGAGELELVRSGLDDTMRKAYQDMRKVWHSRDDVTDLRTAAYLVSIGKVADSYKAKGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N5D9</accession>
    <name>A0A1M5N5D9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1192</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84652.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG84652">
        <property type="protein sequence ID" value="SHG84652"/>
        <property type="gene ID" value="SAMN05444003_1192"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG84652.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="84" mass="9642" checksum="9AF69D47F8025B21" modified="2017-03-15" version="1">MAHSLPVSRDRLKLLGPDTEPTTNFSNILGVVRSTADLFDRIVSHWEYHIENSQDVLRIQTNYAKMYFAALPDFSKTEDPTLMD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N8T0</accession>
    <name>A0A1M5N8T0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_1223</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain fatty acyl-CoA assimilation regulator (ScfR) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85403.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899933.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1223"/>
    <dbReference type="EnsemblBacteria" id="SHG85403">
        <property type="protein sequence ID" value="SHG85403"/>
        <property type="gene ID" value="SAMN05444003_1223"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026281">
        <property type="entry name" value="HTH_RamB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010359">
        <property type="entry name" value="IrrE_HExxH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018653">
        <property type="entry name" value="ScfR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06114">
        <property type="entry name" value="Peptidase_M78"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09856">
        <property type="entry name" value="ScfRs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF019251">
        <property type="entry name" value="Rv0465c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="5">
        <location>
            <begin position="12"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG85403.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="466" mass="51558" checksum="FB48DC6ED9C8CA31" modified="2017-03-15" version="1">MATPKLYAGAKLRELRGRVGLTQKDFAAKLSVSLPYLNQMENNNRPISTAVLLGLAQEFGFDVTELQAGDEARLIGDMKEALADPAFAGPTPALADLRLVASNAPALARAFLDLHTAYRQTHERLASLDEALGREDARLKPSPWEEVRDFFHYCDNYIDAVDRAAERFATSLPDGQSLEDAATETLEAKGIEVVDAEDDKIRHYDPATKTLSLSRFAASETRSFQLLLQTALLTQDALLEATLDLARFQSEESREIAKIGLANYYAGAALMPYGRFLDAATKTRHDLEILSTQFGASLEQVAHRLSTMQRPGAKGIPFFFVRVDQAGTITKRHSATTLQFARFGGACPLWNVHRAFELPGQFLRQLAETPDGVRYFCLARDVSKSGGAWGAPIRRYAIGLGCEVKHASALVYADHMQLKNAEAFEAIGISCRICERKSCHQRSVPPLERQLKVDLNLRDVLPYQVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NAG4</accession>
    <name>A0A1M5NAG4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">EamA-like transporter family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1280</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86510.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899984.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1280"/>
    <dbReference type="EnsemblBacteria" id="SHG86510">
        <property type="protein sequence ID" value="SHG86510"/>
        <property type="gene ID" value="SAMN05444003_1280"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="40"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="69"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="112"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="159"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="188"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="225"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="252"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="157"/>
            <end position="297"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG86510.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="300" mass="32311" checksum="4A465BB276AA33A3" modified="2017-03-15" version="1">MEAWVWITVMAAAAQTVRFMLQKHLKATKLSTTGATFARFIYSAPLVLVIALSYAGVTEQGLPSFNGRFFMFAVIGGLSQILATMCVVALFAHRNFAVGITFKKTEVLLSAIVGIVVLGDFIDWMSFLAILLGFAGVLLLSDPPNAVGSFGSRVFNKGAGLGLLSGLFFGFSGVSYRGASLSIAEGDVFFRAIFTLAFVTAFQVAIMAVWLVWRERGEIMRVLRAWRIASLVGLTSMAGSICWFTAFTMQTAALVNAVGQIELIFSLAASALFFREKVTSRELQGLGLLTLSILALILIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NAJ8</accession>
    <name>A0A1M5NAJ8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 7">L-carnitine dehydrogenase</fullName>
            <shortName evidence="7">CDH</shortName>
            <shortName evidence="7">L-CDH</shortName>
            <ecNumber evidence="5 7">1.1.1.108</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">lcdH</name>
        <name evidence="10" type="ORF">SAMN05444003_1281</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3-dehydrocarnitine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>carnitine + NAD(+) = 3-dehydrocarnitine + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:19265"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17126"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57885"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.1.1.108"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 7">Amine and polyamine metabolism; carnitine metabolism.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4 7">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the 3-hydroxyacyl-CoA dehydrogenase family. L-carnitine dehydrogenase subfamily.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.108" evidence="5 7"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86528.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900447.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1281"/>
    <dbReference type="EnsemblBacteria" id="SHG86528">
        <property type="protein sequence ID" value="SHG86528"/>
        <property type="gene ID" value="SAMN05444003_1281"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00117"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047728">
        <property type="term" value="F:carnitine 3-dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070403">
        <property type="term" value="F:NAD+ binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042413">
        <property type="term" value="P:carnitine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006631">
        <property type="term" value="P:fatty acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02129">
        <property type="entry name" value="L_carnitine_dehydrog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006176">
        <property type="entry name" value="3-OHacyl-CoA_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006108">
        <property type="entry name" value="3HC_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026578">
        <property type="entry name" value="L-carnitine_dehydrogenase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00725">
        <property type="entry name" value="3HCDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02737">
        <property type="entry name" value="3HCDH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0520">NAD</keyword>
    <keyword evidence="7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="3HCDH_N" evidence="9">
        <location>
            <begin position="5"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="domain" description="3HCDH" evidence="8">
        <location>
            <begin position="185"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="9"/>
            <end position="14"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001215"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004855"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00021240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02129"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00725"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG86528.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="487" mass="53837" checksum="A62887F49B2C340E" modified="2017-03-15" version="1">MTKTAAFIGGGVIGGGWAARFLLMGWDVRLFDPDPEAERKMGEVLANARRSLPGLSDTDLPAEGSLTLCETMSEAVDGATWIQESVPERLELKQKVYQTLQEHCDESAIIGSSTSGFKPSELQSTASRPEQIIVTHPFNPVYLLPLVEVVGTGANDPERLDRASEILTSIGMYPLRVRAEIDAHIADRFLEAVWREALWLIKDGIATTEEIDDAIRYGFGLRWAQMGLFETYRVAGGEAGMRHFISQFGPALSWPWTKLMDVPELTEELTDMIADQSDAQSGQYSIRELERARDNNLVSILRGLKAQDWGAGKILNAQDKRVSRIAETLDEVEDVSQPIKTIERAVPLDWTDYNGHMNEARYLQAFGDATDRFMLIVGCDAEYIQNGGSYFTVETHIRHLDEVHAGQTIRVDTQCIVGAGKKMHVFHRMWQGERLLATGEHMLIHVSLETRRPSEPGPQVAGPLTTVAKAHSALPLPDGAGSSVGVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NAN0</accession>
    <name>A0A1M5NAN0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Outer membrane lipoprotein Blc</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1282</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the calycin superfamily. Lipocalin family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86547.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899986.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG86547">
        <property type="protein sequence ID" value="SHG86547"/>
        <property type="gene ID" value="SAMN05444003_1282"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008289">
        <property type="term" value="F:lipid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.128.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012674">
        <property type="entry name" value="Calycin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022271">
        <property type="entry name" value="Lipocalin_ApoD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002446">
        <property type="entry name" value="Lipocalin_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022272">
        <property type="entry name" value="Lipocalin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000566">
        <property type="entry name" value="Lipocln_cytosolic_FA-bd_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08212">
        <property type="entry name" value="Lipocalin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036893">
        <property type="entry name" value="Lipocalin_ApoD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01171">
        <property type="entry name" value="BCTLIPOCALIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50814">
        <property type="entry name" value="SSF50814"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00213">
        <property type="entry name" value="LIPOCALIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="2" id="KW-0446">Lipid-binding</keyword>
    <keyword evidence="2 4" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lipocln_cytosolic_FA-bd_dom" evidence="3">
        <location>
            <begin position="46"/>
            <end position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR036893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG86547.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="182" mass="19701" checksum="BD373E30BDB0A0C2" modified="2017-03-15" version="1">MRALVAGAFVALAGCAALFDDEVGGFFEVYRETDVPIASVALFEPEKYLGTWYEVARFPVPFEAGCAGVTAEYGAQEDGSISVKNTCRNPDGTIKSTIEGSAEIVGPGRLEVSFPSVPFGASDYWVLWVDEDYQTAVVGAPNGRSGWILNRSPEISDDRMAAAQEILDFNGYDLDRLLIVEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NEL3</accession>
    <name>A0A1M5NEL3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MOSC domain-containing protein YiiM</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1338</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87413.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900033.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG87413">
        <property type="protein sequence ID" value="SHG87413"/>
        <property type="gene ID" value="SAMN05444003_1338"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030151">
        <property type="term" value="F:molybdenum ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005302">
        <property type="entry name" value="MoCF_Sase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011037">
        <property type="entry name" value="Pyrv_Knase-like_insert_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50800">
        <property type="entry name" value="SSF50800"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51340">
        <property type="entry name" value="MOSC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MOSC" evidence="1">
        <location>
            <begin position="28"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51340"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG87413.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="197" mass="21676" checksum="52D1DBA741EE0EDD" modified="2017-03-15" version="1">MPALAPTVYVAEIIWLGVVPDTETSLRSEPRTSVHVTFDGFEGEDHSGRTRPSCVRVKSQHPKGTEIANVRQLSVVSQEELDLIAVDCGLDAIDPIWLGANLVVKGIPDFTHVPPSSRLQGPDGVTLTIDMENRPCVLPGREMEKDQPGHGTRFKAAAENRRGVTAWVERPGNLQIGEQLRLHVPDQPEWSAPRKIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NI13</accession>
    <name>A0A1M5NI13_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Ribosomal RNA small subunit methyltransferase I</fullName>
            <ecNumber evidence="6">2.1.1.198</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">16S rRNA 2'-O-ribose C1402 methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">rRNA (cytidine-2'-O-)-methyltransferase RsmI</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rsmI</name>
        <name evidence="8" type="ORF">SAMN05444003_1431</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>cytidine(1402) in 16S rRNA + S-adenosyl-L-methionine = 2'-O-methylcytidine(1402) in 16S rRNA + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42924"/>
            <dbReference type="Rhea" id="RHEA-COMP:10285"/>
            <dbReference type="Rhea" id="RHEA-COMP:10286"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74495"/>
            <dbReference type="ChEBI" id="CHEBI:82748"/>
            <dbReference type="EC" id="2.1.1.198"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the methyltransferase superfamily. RsmI family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.198" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89168.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900116.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1431"/>
    <dbReference type="EnsemblBacteria" id="SHG89168">
        <property type="protein sequence ID" value="SHG89168"/>
        <property type="gene ID" value="SAMN05444003_1431"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070677">
        <property type="term" value="F:rRNA (cytosine-2'-O-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000453">
        <property type="term" value="P:enzyme-directed rRNA 2'-O-methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd11648">
        <property type="entry name" value="RsmI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1010.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01877">
        <property type="entry name" value="16SrRNA_methyltr_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000878">
        <property type="entry name" value="4pyrrol_Mease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035996">
        <property type="entry name" value="4pyrrol_Methylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014777">
        <property type="entry name" value="4pyrrole_Mease_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014776">
        <property type="entry name" value="4pyrrole_Mease_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008189">
        <property type="entry name" value="rRNA_ssu_MeTfrase_I"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46111">
        <property type="entry name" value="PTHR46111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00590">
        <property type="entry name" value="TP_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005917">
        <property type="entry name" value="MTase_YraL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53790">
        <property type="entry name" value="SSF53790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00096">
        <property type="entry name" value="TIGR00096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 6 8" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="5 6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="4 6 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TP_methylase" evidence="7">
        <location>
            <begin position="13"/>
            <end position="216"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01877"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG89168.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="287" mass="31051" checksum="E4B125E7AE58C8D3" modified="2017-03-15" version="1">MTNFKLSPLPAGLCFVATPIGTARDITLRALDILASADVLASEDTRTTRKLMEIHGVPLRDRPLVAFHDHSGPKVVERLIAQMEEGKSVAYFSEAGMPLVADPGYELGKAATEAGHSVTCAPGPSAPLAALTLSGLPTDRFAFIGFLPSTKSQRRAAIAELRDVEMTLIFFESPKRIGEMLIDLSDTLVGERSAAVCRELTKKFEEVQRGTLKDLADRFVDVTVKGELVVVVDRSNNDAVSDGDVDMALRRALETMRVKDAATAVAGALGLPRKVVYQRALDMKEQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NI88</accession>
    <name>A0A1M5NI88_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Probable lipid II flippase MurJ</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">murJ</name>
        <name evidence="10" type="ORF">SAMN05444003_1434</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8 9">Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.</text>
    </comment>
    <comment type="pathway">
        <text evidence="8">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell inner membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8 9">Belongs to the MurJ/MviN family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89230.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900119.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1434"/>
    <dbReference type="EnsemblBacteria" id="SHG89230">
        <property type="protein sequence ID" value="SHG89230"/>
        <property type="gene ID" value="SAMN05444003_1434"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015648">
        <property type="term" value="F:lipid-linked peptidoglycan transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd13123">
        <property type="entry name" value="MATE_MurJ_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02078">
        <property type="entry name" value="MurJ_MviN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004268">
        <property type="entry name" value="MurJ"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03023">
        <property type="entry name" value="MurJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002869">
        <property type="entry name" value="MviN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01806">
        <property type="entry name" value="VIRFACTRMVIN"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01695">
        <property type="entry name" value="murJ_mviN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="2 8 9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 8 9" id="KW-0133">Cell shape</keyword>
    <keyword evidence="8 9" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="7 8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 8 9" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="8 9" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="7"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="29"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="89"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="134"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="161"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="192"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="233"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="274"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="316"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="352"/>
            <end position="369"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="389"/>
            <end position="405"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="411"/>
            <end position="429"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="450"/>
            <end position="471"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="483"/>
            <end position="506"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRNR" id="PIRNR002869"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG89230.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="517" mass="54621" checksum="73BC37238150EA3D" modified="2017-03-15" version="1">MKPIRLMAGFFTVGLWTFLSRIFGFARDILIAATLGTGPVAEAFLIAFSLPNLFRRFFAEGAFNMAFVPMFSKKVEGGDDPHRFAQDAFVGLGFVLTVFSVVGIIFMPLLVTAMASGFRGDERFDLAVLYGRIAFPYILFISLAALLSGVLNAVGRFMAAAAAPVLLNVIFVVTIGITFMGGSTEPSEIGSALAYAVPVAGIAQLALVWVAAKRAGYPLKFARPRMTPELKHLAIIALPAALAGGVVQINLLVGRQVASFFDGAVAWLSYADRLYQLPLGVVGIAIGVVLLPHLSRRLQAGDTAGSRDAFNRATEVSLALTIPASFALIVIPVPLISVLFERGAFTAEDTQATALAVAIYGLGLPAFVLQKTLQPLFFAREDTKRPFHYALIAMVLNAALAIGLAPVIGYIAAAVGTSATGWAMVALLWRGSRGMGEAAMVGARLKRRTGLIIVASVGMSAVLFGLTLALANSAYTASTVLGLTILIASGIISYFGIGQLIGAFKLSEFRSAMRRSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NIF7</accession>
    <name>A0A1M5NIF7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Rhomboid family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1435</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89247.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1435"/>
    <dbReference type="EnsemblBacteria" id="SHG89247">
        <property type="protein sequence ID" value="SHG89247"/>
        <property type="gene ID" value="SAMN05444003_1435"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022764">
        <property type="entry name" value="Peptidase_S54_rhomboid_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035952">
        <property type="entry name" value="Rhomboid-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01694">
        <property type="entry name" value="Rhomboid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF144091">
        <property type="entry name" value="SSF144091"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="77"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="113"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="138"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="170"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="194"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="domain" description="Rhomboid" evidence="6">
        <location>
            <begin position="75"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG89247.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="227" mass="24512" checksum="C4D416ADFE76E6D9" modified="2017-03-15" version="1">MEQYESPVNAIPPAAIAMALLIIGVEIVFSAAGAGFVGGAEGIGWRLSALQEYAYSPLVWDAIIERNEYSFDLLKRFVTYAFVNSSFLSSIFAAALTLALGKFVGEIFGNVPMLIVFFVSIIFGALVFGILLDGLRPLYGSFVPVYGLIGAYTYVIFVRLGSLGANQLQAFRLIGILLAIQLVFGLVFGGDQIWIAELAGFIAGFFASILAAPGGWTAFVKRMRRPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NIR5</accession>
    <name>A0A1M5NIR5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1441</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89382.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900125.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1441"/>
    <dbReference type="EnsemblBacteria" id="SHG89382">
        <property type="protein sequence ID" value="SHG89382"/>
        <property type="gene ID" value="SAMN05444003_1441"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016226">
        <property type="term" value="P:iron-sulfur cluster assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1370.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034904">
        <property type="entry name" value="FSCA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014824">
        <property type="entry name" value="Nfu/NifU_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036498">
        <property type="entry name" value="Nfu/NifU_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035433">
        <property type="entry name" value="NFU1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001075">
        <property type="entry name" value="NIF_FeS_clus_asmbl_NifU_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08712">
        <property type="entry name" value="Nfu_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01106">
        <property type="entry name" value="NifU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036773">
        <property type="entry name" value="HIRIP5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00932">
        <property type="entry name" value="Nfu_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110836">
        <property type="entry name" value="SSF110836"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117916">
        <property type="entry name" value="SSF117916"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nfu_N" evidence="1">
        <location>
            <begin position="3"/>
            <end position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG89382.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="187" mass="19972" checksum="36981E72FD72EC8C" modified="2017-03-15" version="1">MFIQTESTPNPATLKFLPGQDVLGVGTADFPTADSARKSPLATRIYAVDGVSGVFFGVDFVTVTKADDVEWDHIKPAILGSIMEHYQSGQPVMDGDHAPASGHAEHTGGDGEIVDQIKELLDTRVRPAVAQDGGDITFHGFDRGVVYLHMQGACAGCPSSTLTLKMGIENLLRHYIPEVTEVRPVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NK88</accession>
    <name>A0A1M5NK88_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1466</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89931.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG89931">
        <property type="protein sequence ID" value="SHG89931"/>
        <property type="gene ID" value="SAMN05444003_1466"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013291054" evidence="2">
        <location>
            <begin position="25"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="24"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG89931.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="146" mass="15245" checksum="2DA59F68B7C35C76" modified="2017-03-15" version="1">MQTITRSFGLVAVSALVLSGCSQASVRGTPASSPEECRSDWQQERQRAGTSVTSTESVGAVIASIFVSAVATTAEKDAANQRFRACLERFGIEDPQAYLQNPGAYDVLLNQARGNPAGSSRSAPISPCPAGSSVMRAGTQYCVGLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NKD5</accession>
    <name>A0A1M5NKD5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF1737 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1471</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90046.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900152.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1471"/>
    <dbReference type="EnsemblBacteria" id="SHG90046">
        <property type="protein sequence ID" value="SHG90046"/>
        <property type="gene ID" value="SAMN05444003_1471"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013619">
        <property type="entry name" value="DUF1737"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08410">
        <property type="entry name" value="DUF1737"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1737" evidence="1">
        <location>
            <begin position="1"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08410"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG90046.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="67" mass="7462" checksum="42367CC6E4381D2D" modified="2017-03-15" version="1">MQIYRLLTEDDTAAFCHKVSGAISKGWALYGDPQYAFDHANGVMRCAQAVVKEIDGDYHPDMNLGQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NP97</accession>
    <name>A0A1M5NP97_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ThiS family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1527</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91352.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900201.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1527"/>
    <dbReference type="EnsemblBacteria" id="SHG91352">
        <property type="protein sequence ID" value="SHG91352"/>
        <property type="gene ID" value="SAMN05444003_1527"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016155">
        <property type="entry name" value="Mopterin_synth/thiamin_S_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003749">
        <property type="entry name" value="ThiS/MoaD-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02597">
        <property type="entry name" value="ThiS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54285">
        <property type="entry name" value="SSF54285"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG91352.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="81" mass="8982" checksum="9C66C7E7CBD66216" modified="2017-03-15" version="1">MVEVKLWAGLRPLADNQSVATVEASNIREMLRKLEERYPGLATPFRGQVAVAVDGVIYRDDWSKELPEGAEVMLIKRLAGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NSJ8</accession>
    <name>A0A1M5NSJ8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="12">Riboflavin biosynthesis protein</fullName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName evidence="12">Riboflavin kinase</fullName>
                <ecNumber evidence="12">2.7.1.26</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="12">Flavokinase</fullName>
            </alternativeName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="12">FMN adenylyltransferase</fullName>
                <ecNumber evidence="12">2.7.7.2</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="12">FAD pyrophosphorylase</fullName>
            </alternativeName>
            <alternativeName>
                <fullName evidence="12">FAD synthase</fullName>
            </alternativeName>
        </domain>
    </protein>
    <gene>
        <name evidence="14" type="ORF">SAMN05444003_1574</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the phosphorylation of riboflavin to FMN followed by the adenylation of FMN to FAD.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 12">
            <text>ATP + FMN + H(+) = diphosphate + FAD</text>
            <dbReference type="Rhea" id="RHEA:17237"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
            <dbReference type="EC" id="2.7.7.2"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 12">
            <text>ATP + riboflavin = ADP + FMN + H(+)</text>
            <dbReference type="Rhea" id="RHEA:14357"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57986"/>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.26"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4 12">Cofactor biosynthesis; FAD biosynthesis; FAD from FMN: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="5 12">Cofactor biosynthesis; FMN biosynthesis; FMN from riboflavin (ATP route): step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="12">Belongs to the ribF family.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.26" evidence="12"/>
    <dbReference type="EC" id="2.7.7.2" evidence="12"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG92512.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900243.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1574"/>
    <dbReference type="EnsemblBacteria" id="SHG92512">
        <property type="protein sequence ID" value="SHG92512"/>
        <property type="gene ID" value="SAMN05444003_1574"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00276">
        <property type="reaction ID" value="UER00406"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00277">
        <property type="reaction ID" value="UER00407"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003919">
        <property type="term" value="F:FMN adenylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008531">
        <property type="term" value="F:riboflavin kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006747">
        <property type="term" value="P:FAD biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009398">
        <property type="term" value="P:FMN biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009231">
        <property type="term" value="P:riboflavin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02064">
        <property type="entry name" value="FAD_synthetase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015864">
        <property type="entry name" value="FAD_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023468">
        <property type="entry name" value="Riboflavin_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002606">
        <property type="entry name" value="Riboflavin_kinase_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015865">
        <property type="entry name" value="Riboflavin_kinase_bac/euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023465">
        <property type="entry name" value="Riboflavin_kinase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22749">
        <property type="entry name" value="PTHR22749"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06574">
        <property type="entry name" value="FAD_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01687">
        <property type="entry name" value="Flavokinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004491">
        <property type="entry name" value="FAD_Synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00904">
        <property type="entry name" value="Flavokinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82114">
        <property type="entry name" value="SSF82114"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00083">
        <property type="entry name" value="ribF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11 12" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10 12" id="KW-0274">FAD</keyword>
    <keyword evidence="6 12" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="7 12" id="KW-0288">FMN</keyword>
    <keyword evidence="12 14" id="KW-0418">Kinase</keyword>
    <keyword evidence="9 12" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12 14" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 12 14" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Flavokinase" evidence="13">
        <location>
            <begin position="183"/>
            <end position="310"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00002121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00005201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRNR" id="PIRNR004491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="SMART" id="SM00904"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="SHG92512.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="313" mass="34065" checksum="AE5434EB33357AB4" modified="2017-03-15" version="1">MRIIRDTLFIDPEDRGAAAAIGNFDGVHLGHQAVIDVTRQAAKAAHAPLGIMTFEPHPRSYFSNDPIPFRLMNAEAKASRMEKLGVEKLYEVPFNEALAALTPEAFAKEIISERLGLEHVVVGQDFCFGKGRAGTTEDLVRFGQEFGFGVTIAPMVEIAENEVSSTAIRQALTDGRPRDAAAMLGHWHRIEGEVIGGEQRGRELGYPTANMSIAGLHPPKFGVYAVKVDVLDGTHVGSYNGAASIGTRPMFGENLPNCETFLFDFSGDLYGNTLSVALVDYLRPELKFDGLDALITQMDADCTHSREILANVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NTV3</accession>
    <name>A0A1M5NTV3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized conserved protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1590</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the Gfa family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG92917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1590"/>
    <dbReference type="EnsemblBacteria" id="SHG92917">
        <property type="protein sequence ID" value="SHG92917"/>
        <property type="gene ID" value="SAMN05444003_1590"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016846">
        <property type="term" value="F:carbon-sulfur lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006913">
        <property type="entry name" value="CENP-V/GFA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011057">
        <property type="entry name" value="Mss4-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04828">
        <property type="entry name" value="GFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51316">
        <property type="entry name" value="SSF51316"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51891">
        <property type="entry name" value="CENP_V_GFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CENP-V/GFA" evidence="3">
        <location>
            <begin position="3"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005495"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51891"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG92917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="134" mass="14559" checksum="0E51609A56B87513" modified="2017-03-15" version="1">MEITGQCYCGKTRISAKNPLSVVLCHCGDCRRASGAPVAAFVAFDEADLTVNSGNLQNVEVNTGVLREFCGYCGSPITGRYDYLHGTVYVSLGLLDQADALEPTLHAHHDNRLQWLHLSDDVERHGTSARDALP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NV85</accession>
    <name>A0A1M5NV85_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1609</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93378.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900274.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG93378">
        <property type="protein sequence ID" value="SHG93378"/>
        <property type="gene ID" value="SAMN05444003_1609"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032347">
        <property type="entry name" value="DUF4864"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16156">
        <property type="entry name" value="DUF4864"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013133029" evidence="1">
        <location>
            <begin position="20"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG93378.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="133" mass="14749" checksum="94207B3A6AB9DA83" modified="2017-03-15" version="1">MKLLGFIVGLMIVASSALAQTAEAIEDVIGSQLQAFNERDIEEAWQYAAPNIQGAFGNAQNFGMMVQRGYPMVWTNRDVRFLQLEDIGGRQYQRLMLQDANGSLHMLEYQMVQTADGWRIAGVQILPAPDVGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PPW6</accession>
    <name>A0A1M5PPW6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Cytochrome c</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1776</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03857.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900873.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1776"/>
    <dbReference type="EnsemblBacteria" id="SHH03857">
        <property type="protein sequence ID" value="SHH03857"/>
        <property type="gene ID" value="SAMN05444003_1776"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002327">
        <property type="entry name" value="Cyt_c_1A/1B"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11961">
        <property type="entry name" value="PTHR11961"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00034">
        <property type="entry name" value="Cytochrom_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00604">
        <property type="entry name" value="CYTCHRMECIAB"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 5" id="KW-0349">Heme</keyword>
    <keyword evidence="4 5" id="KW-0408">Iron</keyword>
    <keyword evidence="3 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Cytochrome c" evidence="6">
        <location>
            <begin position="75"/>
            <end position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH03857.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="175" mass="18726" checksum="1F5D97BFF106FD6A" modified="2017-03-15" version="1">MFDTMTLTKAGGALCGSLLIFLLGAWAAEIIYHVGDDHGGHGEEHAQGYVIEVETEEVEVVEEEEVDVEVLMASASAEDGEGLWRNCRSCHALEPGVNGTGPSLYGVVGRSVGTEEGFGYSGALVAVADTWTEENLFYFIENPKGWAPGTAMNYNGLRSATDRADLIAYLDSVDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PRT2</accession>
    <name>A0A1M5PRT2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Predicted metal-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1809</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04498.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900607.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1809"/>
    <dbReference type="EnsemblBacteria" id="SHH04498">
        <property type="protein sequence ID" value="SHH04498"/>
        <property type="gene ID" value="SAMN05444003_1809"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012863">
        <property type="entry name" value="DUF1636"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07845">
        <property type="entry name" value="DUF1636"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH04498.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="124" mass="13431" checksum="B9F521C32CC36DE9" modified="2017-03-15" version="1">MTTWITICDTCKRDGWDSATQPETDGEILAGLIEAAAEGAQDVQTRRVSCLMGCKNACNVAIQADGKLNYTLGSFDPAQEDAEGIVAYAGLHAQSETGQVPYREWPQAIKGHFVTRHPPLPKPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PUG6</accession>
    <name>A0A1M5PUG6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">3-methylfumaryl-CoA hydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1829</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900623.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1829"/>
    <dbReference type="EnsemblBacteria" id="SHH04903">
        <property type="protein sequence ID" value="SHH04903"/>
        <property type="gene ID" value="SAMN05444003_1829"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039569">
        <property type="entry name" value="MaoC-like_dehydrat_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13452">
        <property type="entry name" value="MaoC_dehydrat_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MaoC_dehydrat_N" evidence="1">
        <location>
            <begin position="71"/>
            <end position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH04903.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="264" mass="29289" checksum="4607B68EEACEBFBE" modified="2017-03-15" version="1">MSDAIGKTQTLQDVIDPARANALLAALGKPERLSSGDPLAPFFHHIYFWDALAPEALGRDGHPATGGFIPDVGLPRRMWASGKLTFHRPLLAGVRAEKISTIESVTHKDGRSGPLAFVRIRHDIKQRHTLALTEWQDLVYREDTPQAATTPPQAPDGETRLRHVDFDSTLLFRYSALTFNGHRIHYDEAYARGIEGYDGLVVHGPLIAQLLMLFAVEHNGPLTKFSYRATAPLMHTERATLCLQGRNAWARGPDGRQLMLADFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PUY1</accession>
    <name>A0A1M5PUY1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Aspartate carbamoyltransferase</fullName>
            <ecNumber evidence="6">2.1.3.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Aspartate transcarbamylase</fullName>
            <shortName evidence="6">ATCase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">pyrB</name>
        <name evidence="10" type="ORF">SAMN05444003_1866</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>carbamoyl phosphate + L-aspartate = H(+) + N-carbamoyl-L-aspartate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:20013"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:32814"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
            <dbReference type="EC" id="2.1.3.2"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 6">Pyrimidine metabolism; UMP biosynthesis via de novo pathway; (S)-dihydroorotate from bicarbonate: step 2/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 6">Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.</text>
    </comment>
    <dbReference type="EC" id="2.1.3.2" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05648.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900657.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1866"/>
    <dbReference type="EnsemblBacteria" id="SHH05648">
        <property type="protein sequence ID" value="SHH05648"/>
        <property type="gene ID" value="SAMN05444003_1866"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00070">
        <property type="reaction ID" value="UER00116"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016597">
        <property type="term" value="F:amino acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004070">
        <property type="term" value="F:aspartate carbamoyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006207">
        <property type="term" value="P:'de novo' pyrimidine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044205">
        <property type="term" value="P:'de novo' UMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006520">
        <property type="term" value="P:cellular amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1370">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00001">
        <property type="entry name" value="Asp_carb_tr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006132">
        <property type="entry name" value="Asp/Orn_carbamoyltranf_P-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006130">
        <property type="entry name" value="Asp/Orn_carbamoylTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036901">
        <property type="entry name" value="Asp/Orn_carbamoylTrfase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002082">
        <property type="entry name" value="Asp_carbamoyltransf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006131">
        <property type="entry name" value="Asp_carbamoyltransf_Asp/Orn-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11405:SF16">
        <property type="entry name" value="PTHR11405:SF16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00185">
        <property type="entry name" value="OTCace"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02729">
        <property type="entry name" value="OTCace_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00100">
        <property type="entry name" value="AOTCASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53671">
        <property type="entry name" value="SSF53671"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00670">
        <property type="entry name" value="asp_carb_tr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00097">
        <property type="entry name" value="CARBAMOYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="OTCace_N" evidence="9">
        <location>
            <begin position="6"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="domain" description="OTCace" evidence="8">
        <location>
            <begin position="156"/>
            <end position="301"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008896"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00001"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH05648.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="317" mass="34913" checksum="44BE19045D259B7F" modified="2017-03-15" version="1">MSFGAKHLLGIEHLNPSDISTLLDLADQYADRPTDIAHRNVLAGMTQINMFFENSTRTLASFELAGKRLGADVMNMAMQASSIKKGETLIDTALTLNAMHPDLLVVRHPHSGAVDLLSQKVNAAVLNAGDGKHEHPTQALLDALTIRRRKGRLHRLSVAICGDIAHSRVARSNIILMGKMENRVRLIGPPTLMPSQIGELGVEVFDSMEEGLKDVDVVMMLRLQRERMDGGFIPSEREYFHRYGLDATKLSHAKDDAIVMHPGPMNRGVEIDGTIADDINRSVIQTQVEMGVAVRMAAMDLLARNLRESRVETGVMV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q1F1</accession>
    <name>A0A1M5Q1F1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Octaprenyl-diphosphate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1953</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the FPP/GGPP synthase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07293.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900729.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1953"/>
    <dbReference type="EnsemblBacteria" id="SHH07293">
        <property type="protein sequence ID" value="SHH07293"/>
        <property type="gene ID" value="SAMN05444003_1953"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008299">
        <property type="term" value="P:isoprenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00685">
        <property type="entry name" value="Trans_IPPS_HT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.600.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008949">
        <property type="entry name" value="Isoprenoid_synthase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000092">
        <property type="entry name" value="Polyprenyl_synt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033749">
        <property type="entry name" value="Polyprenyl_synt_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00348">
        <property type="entry name" value="polyprenyl_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48576">
        <property type="entry name" value="SSF48576"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00723">
        <property type="entry name" value="POLYPRENYL_SYNTHASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00444">
        <property type="entry name" value="POLYPRENYL_SYNTHASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU004466"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH07293.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="332" mass="36087" checksum="9C151FFBCF430478" modified="2017-03-15" version="1">MSLDHAATKPHERLADALSEDMAAVNAMIRERMASENAPRIPEVTAHLVEAGGKRVRPMLTLAAARMCGYEGPYHVHLAATVEFIHTATLLHDDVVDESSQRRGRPTANLLWDNNSSVLVGDYLFARSFQLMVETGSIRVLDILANAAATIAEGEVLQLTAASDLKTTEETYLKVVRGKTAALFSAATEVGGVIAGMPEDKVQALFDYGDALGIAFQIVDDLLDFGGTDAIGKNIGDDFRERKLTMPIIRAVTQADAEERAFWERTIAKGRQEDGDLETAIAILKRHGALDTTRETALSWAAKAKDALTSLPDHEIKDMLSDLADYVVARIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q478</accession>
    <name>A0A1M5Q478_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Hypothetical chaperone protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2027</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the heat shock protein 70 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08706.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900787.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2027"/>
    <dbReference type="EnsemblBacteria" id="SHH08706">
        <property type="protein sequence ID" value="SHH08706"/>
        <property type="gene ID" value="SAMN05444003_2027"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd10231">
        <property type="entry name" value="YegD_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018181">
        <property type="entry name" value="Heat_shock_70_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013126">
        <property type="entry name" value="Hsp_70_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042054">
        <property type="entry name" value="YegD-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19375">
        <property type="entry name" value="PTHR19375"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00012">
        <property type="entry name" value="HSP70"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00329">
        <property type="entry name" value="HSP70_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007381"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH08706.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="411" mass="44170" checksum="19AA73006EA89037" modified="2017-03-15" version="1">MKHRLGIDFGTSNTAAAIMAGDKPYLIPVEEGKTTLPTSVFFDTHRANAVYGSAANAALIDGREGRFMRALKSVLGTPLMHERRLISYQRVTLIEVVALFLTTVKQRAEQATGLTIDSVLSGRPVRFHPDPDRNARAEVDLRSAYETAGFTDISFMYEPEAAAQTSTANLDGNYGLVVDIGGGTSDFTIFEKSSGQTRVIASHGVRVGGTNFDRALNLATVMPLLGYHGELKNEMCPGTHTAPNALFQDLATWEKIPFLYTPETQRFTKRYAKLALDKPPFERLAEVIEMEMGHDISFAVEAGKIARNASDSAEIDLSFIEPNLVVPLSGSILSTTLTPLTTQISDAARATLAMADLSSDDIGTVVYVGGSSLMRSVTEAITAVLPNAAQERTAAFTAVADGLAMAAAQSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q4J9</accession>
    <name>A0A1M5Q4J9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">DNA replication and repair protein RecF</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">recF</name>
        <name evidence="6" type="ORF">SAMN05444003_2040</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the RecF family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08932.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900798.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2040"/>
    <dbReference type="EnsemblBacteria" id="SHH08932">
        <property type="protein sequence ID" value="SHH08932"/>
        <property type="gene ID" value="SAMN05444003_2040"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009432">
        <property type="term" value="P:SOS response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1050.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00365">
        <property type="entry name" value="RecF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001238">
        <property type="entry name" value="DNA-binding_RecF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018078">
        <property type="entry name" value="DNA-binding_RecF_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042174">
        <property type="entry name" value="RecF_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32182:SF0">
        <property type="entry name" value="PTHR32182:SF0"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00618">
        <property type="entry name" value="RECF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0227">DNA damage</keyword>
    <keyword evidence="4" id="KW-0234">DNA repair</keyword>
    <keyword evidence="4" id="KW-0235">DNA replication</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0742">SOS response</keyword>
    <feature type="domain" description="AAA" evidence="5">
        <location>
            <begin position="25"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="33"/>
            <end position="40"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH08932.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="371" mass="40047" checksum="90714229312B4754" modified="2017-03-15" version="1">MKQLALTSLMLSHFRSHKLVELECDGRPIAIYGANGAGKTNLIEAVSLLSPGRGLRRAGPDDLTRRPEALGWKVKGVLQSLHQTHELETGAEAGQSRQVRIDDKAAAQIALGRVGRMVWLVPSMDRLWIEGADGRRRFLDRATLSFLPHHAEAVLKYEKAMRERNRLLKDMVRDAHWYVALEAQMAEAGAEITRNRQHAISELIAGQADAETAFPQAGLSLGNANPFEGQDDSEALKAALADGRSSDLGAGRTLVGPHRADLEAVFTDKGVPAKDCSTGEQKALLISVILANARAVGRDFGAPPIILLDEVAAHLDAGRRAALYDEICALGAQAWMTGTGPELFAELGDRAQYIEVSEVDGASVAEQRSSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q4P6</accession>
    <name>A0A1M5Q4P6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 10 11">Chromosomal replication initiator protein DnaA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">dnaA</name>
        <name evidence="16" type="ORF">SAMN05444003_2042</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9 10 11">Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'-TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 10 12">Belongs to the DnaA family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900800.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2042"/>
    <dbReference type="EnsemblBacteria" id="SHH08978">
        <property type="protein sequence ID" value="SHH08978"/>
        <property type="gene ID" value="SAMN05444003_2042"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003688">
        <property type="term" value="F:DNA replication origin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006270">
        <property type="term" value="P:DNA replication initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006275">
        <property type="term" value="P:regulation of DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06571">
        <property type="entry name" value="Bac_DnaA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1750.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00377">
        <property type="entry name" value="DnaA_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001957">
        <property type="entry name" value="Chromosome_initiator_DnaA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020591">
        <property type="entry name" value="Chromosome_initiator_DnaA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018312">
        <property type="entry name" value="Chromosome_initiator_DnaA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013317">
        <property type="entry name" value="DnaA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013159">
        <property type="entry name" value="DnaA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024633">
        <property type="entry name" value="DnaA_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038454">
        <property type="entry name" value="DnaA_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010921">
        <property type="entry name" value="Trp_repressor/repl_initiator"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30050:SF2">
        <property type="entry name" value="PTHR30050:SF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00308">
        <property type="entry name" value="Bac_DnaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08299">
        <property type="entry name" value="Bac_DnaA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11638">
        <property type="entry name" value="DnaA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00051">
        <property type="entry name" value="DNAA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00760">
        <property type="entry name" value="Bac_DnaA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48295">
        <property type="entry name" value="SSF48295"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00362">
        <property type="entry name" value="DnaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01008">
        <property type="entry name" value="DNAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 10 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 10 11" id="KW-0235">DNA replication</keyword>
    <keyword evidence="8 10 11" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6 10 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="14">
        <location>
            <begin position="137"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="domain" description="Bac_DnaA_C" evidence="15">
        <location>
            <begin position="353"/>
            <end position="422"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="13">
        <location>
            <begin position="76"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="145"/>
            <end position="152"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006583"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00018893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00024640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00377"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU000577"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU004227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="SMART" id="SM00760"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="SHH08978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="445" mass="50228" checksum="20779DAB5D60E33A" modified="2017-03-15" version="1">MTTQVWGEVLQSLKAGMSANSYKNWIAPLELKSLSDKVATFEVPTGFIGNYVQQNFGDQIIYQLNRHEQDVQRLSFSVPEKTSAKPAAKAPRKAQKADDTAGGPIDPRFTFDSFVVGKPNELANAAARRVAEGGPVTFNPLFLYGGVGLGKTHLMHAIANELRERQPELNVLYLSAEQFMYRFITALRERKMMDFKQLFRSVDVLMVDDVQFIAGKDSTQEEFFHTFNALVDANKQIIISADRAPGEIKDLEDRIRSRLQCGLVVDLHPTDYELRLGVLQAKVAIQQAQYPDLVIADGVLEFLAHRITTNVRVLEGALTRLFAFASLVGREITLELTQDCLSDVLKASDRKVTVEEIQRKVSEHFNIRLSDMIGPKRLRTFARPRQMAMYLAKQMTSRSLPEIGRRFGGRDHTTVMHGVKRIEELMVTDSQIADDVELLRRALEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q6F8</accession>
    <name>A0A1M5Q6F8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Chlorophyllide a reductase subunit X</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_2068</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the NifH/BchL/ChlL family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09496.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900824.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2068"/>
    <dbReference type="EnsemblBacteria" id="SHH09496">
        <property type="protein sequence ID" value="SHH09496"/>
        <property type="gene ID" value="SAMN05444003_2068"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016628">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030494">
        <property type="term" value="P:bacteriochlorophyll biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015979">
        <property type="term" value="P:photosynthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010246">
        <property type="entry name" value="BchX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030655">
        <property type="entry name" value="NifH/chlL_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000392">
        <property type="entry name" value="NifH/frxC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42864">
        <property type="entry name" value="PTHR42864"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00142">
        <property type="entry name" value="Fer4_NifH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02016">
        <property type="entry name" value="BchX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00746">
        <property type="entry name" value="NIFH_FRXC_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00692">
        <property type="entry name" value="NIFH_FRXC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51026">
        <property type="entry name" value="NIFH_FRXC_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 8" id="KW-0408">Iron</keyword>
    <keyword evidence="7 8" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="314"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="316"/>
            <end position="335"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005504"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003688"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH09496.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="335" mass="35684" checksum="8F27FDF3D28A90B8" modified="2017-03-15" version="1">MKDEVPNLKDFDQRLRDEAKIEPTLEVPQGEPTSKTQIIAIYGKGGIGKSFTLANLSHMMAEQGKRVLLIGCDPKSDTTSLLFGGKACPTIIETSAKKKIAGEEVKIGDVCFKRGGVFAMELGGPEVGRGCGGRGIIHGFELLEKLGFHDWDFDYVLLDFLGDVVCGGFGLPIARDMAQKVILVGSNDLQSLYVANNVCSAVEYFRKLGGNVGVAGLVINKDDGTGEAQAFAKAVDIPVLASIPADDDLRKKSANYQIVGTQKKGQWGDMFAGLADAVAGAPPTHPTALDQDGLLALFDAEETGADFVLEPATDSDMRGKNAKPKESLEVIYDDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q6J1</accession>
    <name>A0A1M5Q6J1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2087</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09877.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900842.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH09877">
        <property type="protein sequence ID" value="SHH09877"/>
        <property type="gene ID" value="SAMN05444003_2087"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH09877.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="181" mass="20028" checksum="778F2DF573DE34E7" modified="2017-03-15" version="1">MAPTGTIPASKLVTLFNNTCLAQYPDVQAVRTTFERAGLKDITYEEQDPALGNWIYSDDDGELSATIGTTVVHWSGLGGGGVEYDSRCEVSGILINPESIDLALEDLGTSLELDTTRNFSFDNQNRRGGILEHDGARYRIHFGQPIKVKRAQNGEIPLECNGVDRCRVWDRARLTIRPTDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q6W3</accession>
    <name>A0A1M5Q6W3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2079</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09722.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900834.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH09722">
        <property type="protein sequence ID" value="SHH09722"/>
        <property type="gene ID" value="SAMN05444003_2079"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH09722.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="243" mass="26387" checksum="8B81DD8F9E150C67" modified="2017-03-15" version="1">MAGFFKYVFTCCAVIIASAGPGRSENWLLVQTNVFPAGCPSLVDCIDASTQELRNLMALDPEETTAFLDVIAQLSDVEDIPDLPAASMPADFPLMDIVPRLQMLEVQGKEDALRGLPGIYFDAARVAGDGLPEVFASYFTDMLTTAGIPVLTEEEALLLPGAARMSVSLSLTRDNAGCIFPFRASLSLKEEVVLVRDPSIKLETTTWSMSVAQNFTNTNFTAEMALRDAAQRFIDDYKNANAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q707</accession>
    <name>A0A1M5Q707_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">N-methylhydantoinase A/oxoprolinase/acetone carboxylase, beta subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2078</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09700.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900833.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2078"/>
    <dbReference type="EnsemblBacteria" id="SHH09700">
        <property type="protein sequence ID" value="SHH09700"/>
        <property type="gene ID" value="SAMN05444003_2078"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008040">
        <property type="entry name" value="Hydant_A_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002821">
        <property type="entry name" value="Hydantoinase_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045079">
        <property type="entry name" value="Oxoprolinase_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11365">
        <property type="entry name" value="PTHR11365"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05378">
        <property type="entry name" value="Hydant_A_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01968">
        <property type="entry name" value="Hydantoinase_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hydant_A_N" evidence="2">
        <location>
            <begin position="5"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="domain" description="Hydantoinase_A" evidence="1">
        <location>
            <begin position="189"/>
            <end position="324"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH09700.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="669" mass="69705" checksum="ECF38D364E272E1D" modified="2017-03-15" version="1">MAYLLGVDTGGTYTDAVVIDDATQAVIAKGKALTSRPDLSIGVSGAIDAALAEAQIPANQVSLVSLSTTLATNALVEGQGGRVALIFIGFDDAEFERNGLKDALGGDPLITLAGGHNHAGSEQAPLDLGKLRSEVAELPEGITGFAVASHFATRNPAHEESVREVLREVTGLPVTCSHELSSALGGPKRALTAVLNARLIGMIDRLIKACEAHLNAVGITARLMVVRGDGALISAELARRKPIETILSGPAASIEGARWLTDETTALVSDIGGTTTDVCLLRDGRPQIDPQGARVGPYRTMVEAVAMRTFGLGGDSEVHVDAGLKIGLRLGPRRIMPISLLATQAPELVHGVYDRGLASDLPMIDGGRFVIPLWSDTAPDGLDKREAAIAERLRSGPIRLGEAVTSRIEGPALGRLVTRGLVIEAGVTPADAAHMLGLSDSWDRDAAHKALTLFARQRTGGGDKLAETPEALARMIIDQVTHQTTDCILQSAFSEDGRDFELPAAELARHPLTMAGLDAHSDIVNTQVSLAVPVIGLGASAKSYYGAVGDRLGTTMKVPDHADVANAIGAVVGHVTMQAKGTVTGAGLGRVAAHLLSGPQNFVEADEALAALEEELRASVAKDAAASGVDDPQFSVSVDKKSAEIENAEMFISADMTVLARGRPRIATE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QH13</accession>
    <name>A0A1M5QH13_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Putative spermidine/putrescine transport system ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2116</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH13382.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901453.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2116"/>
    <dbReference type="EnsemblBacteria" id="SHH13382">
        <property type="protein sequence ID" value="SHH13382"/>
        <property type="gene ID" value="SAMN05444003_2116"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013611">
        <property type="entry name" value="Transp-assoc_OB_typ2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08402">
        <property type="entry name" value="TOBE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="7"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="39"/>
            <end position="46"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH13382.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="327" mass="34934" checksum="20D02EED81DB69B5" modified="2017-03-15" version="1">MTQKIDLELISLTKRYGATVAVDAISYHFDAGTYACLLGPSGCGKSSTLRMIAGHETASDGAITLGGRDISTLPPAKRGTAMMFQNYALFPHLSVLDNVAFSLTMKGVDKGTRHARANELLELVDMTAMTDRLPAQLSGGQQQRAALARALITKPDVLLLDEPLSALDPFLRIRMRAELKKLQRELGLTFVHVTHGQDEALALADEIVVMNDARIEQAGKTRAVFDAPSTAFVARFLGSHNVVVMPEGLVAVRSDAMKVTDQTGAKLPGTITNIEYQGTHVALTAAVPGAQEVTALLSDKDFFGNPKELGEAIGLDWEAEAAHALAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QHU6</accession>
    <name>A0A1M5QHU6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative spermidine/putrescine transport system substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2115</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial solute-binding protein 1 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH13360.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900915.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2115"/>
    <dbReference type="EnsemblBacteria" id="SHH13360">
        <property type="protein sequence ID" value="SHH13360"/>
        <property type="gene ID" value="SAMN05444003_2115"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006059">
        <property type="entry name" value="SBP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019546">
        <property type="entry name" value="TAT_signal_bac_arc"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13416">
        <property type="entry name" value="SBP_bac_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10518">
        <property type="entry name" value="TAT_signal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0574">Periplasm</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH13360.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="424" mass="46516" checksum="B658C1228E0A81E0" modified="2017-03-15" version="1">MTTISKVRYSRRSLLKSGGAAVAAAALPAPMVWGQETKDITLRQFGTGVSNLNDVALKVKEDLGFNLEMTALDTDSVTQRAATQPNSFDIADIEYFICKKVWAAGNLQAMDTSKIAQYDNIAGTFRSGLLTPESTIAQGTAPHTVGFTSGVNGKDFVQEESGWMTLIPTIYNADTLGIRPDLIGRPINNWSELLNPEFKGKASILDISSIGIMDMALVVESMGEYTYPDKGNMTKEEIDLTLGIFTEAKKNGQFRAFWKSFDESVNLMASGEVVIQSMWSPAITAVRSQGIPCVYQPLEEGYRSWGGGLGLSASLSGMELDAAYEYINWYLSGWVGGYLMRQGYYSAVPSTSKEFMSEDEWGYWYEGKESKGDIVSPTGAKLAGPGEVRDGGSFLERMGSVVCWNSVMDENQYMVRKWNEFIAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QN10</accession>
    <name>A0A1M5QN10_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">8-oxo-dGTP diphosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2207</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15271.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2207"/>
    <dbReference type="EnsemblBacteria" id="SHH15271">
        <property type="protein sequence ID" value="SHH15271"/>
        <property type="gene ID" value="SAMN05444003_2207"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020084">
        <property type="entry name" value="NUDIX_hydrolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00893">
        <property type="entry name" value="NUDIX_BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="2">
        <location>
            <begin position="15"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH15271.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="143" mass="16197" checksum="AA14132826D45CE9" modified="2017-03-15" version="1">MKRFGAAPKSGQKYKSRPGAYAILPRRGQLLLTWQGDPHFEVQLPGGGIDPGESPITALHREVFEETGWRIAKPRRLGAFRRFTFMPEYDMWAEKVCHIYLATPTMRLGDPAEPDHDAIWMHPDMAIKTLYNDGDAEFVAGLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QPG5</accession>
    <name>A0A1M5QPG5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 15 16">Protoporphyrinogen IX oxidase</fullName>
            <shortName evidence="15">PPO</shortName>
            <ecNumber evidence="15 16">1.3.99.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">SAMN05444003_2226</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="15 16">Catalyzes the oxidation of protoporphyrinogen IX to protoporphyrin IX.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 15 16">
            <text>3 A + protoporphyrinogen IX = 3 AH2 + protoporphyrin IX</text>
            <dbReference type="Rhea" id="RHEA:62000"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:57306"/>
            <dbReference type="ChEBI" id="CHEBI:57307"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="15 16">
            <name>heme b</name>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
        </cofactor>
        <text evidence="15 16">Binds 1 heme b (iron(II)-protoporphyrin IX) group per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4 15 16">Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; protoporphyrin-IX from protoporphyrinogen-IX: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="15">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3 15">Cell membrane</location>
            <topology evidence="3 15">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5 15 16">Belongs to the HemJ family.</text>
    </comment>
    <dbReference type="EC" id="1.3.99.-" evidence="15 16"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2226"/>
    <dbReference type="EnsemblBacteria" id="SHH15640">
        <property type="protein sequence ID" value="SHH15640"/>
        <property type="gene ID" value="SAMN05444003_2226"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00251">
        <property type="reaction ID" value="UER00324"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070818">
        <property type="term" value="F:protoporphyrinogen oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006782">
        <property type="term" value="P:protoporphyrinogen IX biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02239">
        <property type="entry name" value="HemJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005265">
        <property type="entry name" value="HemJ-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40255">
        <property type="entry name" value="PTHR40255"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03653">
        <property type="entry name" value="UPF0093"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004638">
        <property type="entry name" value="UCP004638"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00701">
        <property type="entry name" value="TIGR00701"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 15 16" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 15 16" id="KW-0349">Heme</keyword>
    <keyword evidence="13 15 16" id="KW-0408">Iron</keyword>
    <keyword evidence="14 15 16" id="KW-0472">Membrane</keyword>
    <keyword evidence="10 15 16" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12 15" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 15" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="11 15" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="61"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="88"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="128"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="15">
        <location>
            <position position="16"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="15">
        <location>
            <position position="93"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001093"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00006501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00017504"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="PIRNR" id="PIRNR004638"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="SHH15640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="149" mass="17010" checksum="F5952613C386575D" modified="2017-03-15" version="1">MLDFLLPFYSWIKAFHIISVISWMAGMFYLPRLFVYHAETAEVGSEMDQTFQTMERKLLKVIMGPAMMASWLFGLLLIGMGVFDFGSAWSWIKLFAVVAMTGAHIWLSARQKEFAAGENTRSGRTYRIANEVPTVLMFIIVIAVIVRPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QPN4</accession>
    <name>A0A1M5QPN4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">ATP-dependent protease subunit HslV</fullName>
            <ecNumber evidence="7">3.4.25.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">hslV</name>
        <name evidence="8" type="ORF">SAMN05444003_2239</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>ATP-dependent cleavage of peptide bonds with broad specificity.</text>
            <dbReference type="EC" id="3.4.25.2"/>
        </reaction>
    </comment>
    <comment type="activity regulation">
        <text evidence="7">Allosterically activated by HslU binding.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">A double ring-shaped homohexamer of HslV is capped on each side by a ring-shaped HslU homohexamer. The assembly of the HslU/HslV complex is dependent on binding of ATP.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the peptidase T1B family. HslV subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.4.25.2" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15888.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901482.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2239"/>
    <dbReference type="EnsemblBacteria" id="SHH15888">
        <property type="protein sequence ID" value="SHH15888"/>
        <property type="gene ID" value="SAMN05444003_2239"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009376">
        <property type="term" value="C:HslUV protease complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005839">
        <property type="term" value="C:proteasome core complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004298">
        <property type="term" value="F:threonine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051603">
        <property type="term" value="P:proteolysis involved in protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01913">
        <property type="entry name" value="protease_HslV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00248">
        <property type="entry name" value="HslV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022281">
        <property type="entry name" value="ATP-dep_Prtase_HsIV_su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001353">
        <property type="entry name" value="Proteasome_sua/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023333">
        <property type="entry name" value="Proteasome_suB-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32194">
        <property type="entry name" value="PTHR32194"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00227">
        <property type="entry name" value="Proteasome"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF039093">
        <property type="entry name" value="HslV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03692">
        <property type="entry name" value="ATP_dep_HslV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51476">
        <property type="entry name" value="PROTEASOME_BETA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 7" id="KW-0021">Allosteric enzyme</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 7" id="KW-0645">Protease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7" id="KW-0915">Sodium</keyword>
    <keyword evidence="4 7" id="KW-0888">Threonine protease</keyword>
    <feature type="active site" evidence="7">
        <location>
            <position position="12"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="168"/>
        </location>
        <ligand>
            <name>Na(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29101"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="171"/>
        </location>
        <ligand>
            <name>Na(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29101"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="174"/>
        </location>
        <ligand>
            <name>Na(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29101"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006053"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022698"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023053"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH15888.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="185" mass="19520" checksum="EBFD0F1FE7C00965" modified="2017-03-15" version="1">MAQEEFPGWHGTTIIGVRKGGEVVIAGDGQVSLGQTVIKGTARKVRRLKPGGHEVIAGFAGSTADAFTLLERLEKKLEATPGQLARASVELAKDWRTDKYLQKLEAMLIVSDGKELFVITGGGDVLEPEHDVTAIGSGGNFALAAGRALMSTDKPAEEIAREAMAIASDICVYTNGNLTVESIKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QQZ7</accession>
    <name>A0A1M5QQZ7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2255</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901129.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH16190">
        <property type="protein sequence ID" value="SHH16190"/>
        <property type="gene ID" value="SAMN05444003_2255"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013879">
        <property type="entry name" value="DUF1761"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08570">
        <property type="entry name" value="DUF1761"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="49"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="80"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="109"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH16190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="130" mass="13733" checksum="05D1483E2806C29A" modified="2017-03-15" version="1">MGFLSVIVAAVAGFAFGAFWYMVLSKPWIEAANIKVGEDGRPENDNPLPYIMAALAMVLVAGMMRHTFALSGIDTASKGLISGLGVGLFFISPWIMINNGYGGRPFKLTLIDGGYAAFGCAIIGLVLTLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QR20</accession>
    <name>A0A1M5QR20_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2274</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16554.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH16554">
        <property type="protein sequence ID" value="SHH16554"/>
        <property type="gene ID" value="SAMN05444003_2274"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH16554.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="42" mass="4619" checksum="6D7E2A529D937AB2" modified="2017-03-15" version="1">MPNIRFTKSAIDGLPYAQGRQVIYRDSALRGLAVRVGAESKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QRH2</accession>
    <name>A0A1M5QRH2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Amino acid/amide ABC transporter membrane protein 2, HAAT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2282</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16724.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901166.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2282"/>
    <dbReference type="EnsemblBacteria" id="SHH16724">
        <property type="protein sequence ID" value="SHH16724"/>
        <property type="gene ID" value="SAMN05444003_2282"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015658">
        <property type="term" value="F:branched-chain amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06581">
        <property type="entry name" value="TM_PBP1_LivM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043428">
        <property type="entry name" value="LivM-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30482">
        <property type="entry name" value="PTHR30482"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="27"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="50"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="76"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="101"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="130"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="183"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="234"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="271"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="316"/>
            <end position="334"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH16724.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="358" mass="39084" checksum="082ABCE79A3114BC" modified="2017-03-15" version="1">MLYREAGDFKTSYAADSQTFPIAFDRYRYWAVLAVAFLVVPFFVNDYWANAILVPFLIYAIAAIGLNILTGYCGQVSLGTGGFMAVGAFACYKLMTAFPDVSIVIHLILSGVITAAVGAAFGLPSLRIKGFYLAVATLAAQFFLVWLFNRVPWFYNYSASGQINAPERTVFGVPVTGPNTEAWAQYLICLVFVTVCAIIARNLTRGTQGRTWMSIRDMDIAAEIIGVNPLKAKLTAFAVSSFFVGIAGALFFAVYLGAVEVGEVFGIQKSFLVLFMIIIGGLGSIFGSFAGAAFLVILPVALKLVGVDLLGWPTDLVAHLQLVIIGALIMFFLIKEPHGLAQWWRVAKEKLRLWPFPY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QWK1</accession>
    <name>A0A1M5QWK1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2363</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18472.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901304.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2363"/>
    <dbReference type="EnsemblBacteria" id="SHH18472">
        <property type="protein sequence ID" value="SHH18472"/>
        <property type="gene ID" value="SAMN05444003_2363"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="20"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="89"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="121"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="157"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="208"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="264"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="378"/>
            <end position="396"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="453"/>
            <end position="475"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="455"/>
            <end position="475"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH18472.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="475" mass="52415" checksum="2D8E7DB214033851" modified="2017-03-15" version="1">MAMFAILTWPFAIIAIFRKWGMAIAVIVGLIGAYLLLPTETAIDLPLLPALDKNSIPSLFVLFLGIAFVRPSKDQLRDGVVLPGWLPRTPLISILMFMLVFGAILTGLTNGESIAAGPRRLPGLTIYDALSGAMLACMILIPVLLARKFLGHPDQHLKLLIILSVAGMIYSLPTLYEVRMSPQLNRMVYGFFPHSWQQHIRGDGFRPIVFLSHGLWLGIFLALSALATVALTRVHTSGSKIWYWFCALWLAGTLLLSKNLGASVIFFVLLPVVWFFGVRLQLLSAAIIAAIVLTYPILRGNDLVPTNQLVSLAQNVSAERAGSLQFRFVNEDIVMDKAQRKPIFGWGGWGRQRVYDDRGRSAVTLDGRWVIVIGTGGWIRYLAEFGLLTLPILLLWRRRNKLGVTLTTSCLAILLAGNTVDLLPNSSLTPVTWILAGALIGRLEIGRDRLESGQSNEMPVATTSDQGGSYTRFRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R000</accession>
    <name>A0A1M5R000_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Lipid A oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2427</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19705.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901394.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2427"/>
    <dbReference type="EnsemblBacteria" id="SHH19705">
        <property type="protein sequence ID" value="SHH19705"/>
        <property type="gene ID" value="SAMN05444003_2427"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011250">
        <property type="entry name" value="OMP/PagP_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027385">
        <property type="entry name" value="OMP_b-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13505">
        <property type="entry name" value="OMP_b-brl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56925">
        <property type="entry name" value="SSF56925"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013177907" evidence="1">
        <location>
            <begin position="19"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="domain" description="OMP_b-brl" evidence="2">
        <location>
            <begin position="6"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH19705.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="213" mass="23478" checksum="E8967C3D0281C59D" modified="2017-03-15" version="1">MKRSLILAIAAVPSFAAAEIEFSFYTGNQTAPASDISVRGDDLAPDDDFRIRWEGLPFEWPIYAGARITKWQTETFGWGLDYAHNKTYPIEGELPAGYSALEFTDGLNTWTINAYRRWPDMFGNATPYIGVGLGLSVPGVEVTYLGNTTFEYQVTGLAATWLAGVSYPINDIWAVFGEYKGTYTSNTVDLDTGGTLSTDIFTDAFNIGVSYTY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R022</accession>
    <name>A0A1M5R022_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">MFS transporter, BCD family, chlorophyll transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2399</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the PucC family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19143.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901356.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2399"/>
    <dbReference type="EnsemblBacteria" id="SHH19143">
        <property type="protein sequence ID" value="SHH19143"/>
        <property type="gene ID" value="SAMN05444003_2399"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06176">
        <property type="entry name" value="MFS_BCD_PucC-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026036">
        <property type="entry name" value="PucC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004896">
        <property type="entry name" value="PucC-rel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23538">
        <property type="entry name" value="PTHR23538"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03209">
        <property type="entry name" value="PUCC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF016565">
        <property type="entry name" value="PucC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="36"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="62"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="102"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="138"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="174"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="203"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="252"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="286"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="325"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="350"/>
            <end position="374"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="386"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="436"/>
            <end position="456"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008412"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH19143.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="476" mass="50339" checksum="1288BA43C27F6C1D" modified="2017-03-15" version="1">MFIRAETVKKISTDLLPFSDAVSEDLPLSQLLRMSLFQFSVGMAAVMLLGTLNRVMIVELSVPAFVVAIMIAIPVLVAPFRALLGFRSDTYKSAIGWKRIPYLWFGSLYQFGGLAIMPMGLLVLSGSQAIGPTWAGEVGAALAFLLTGLGMHMTQTAGLALAADRATEETRPKVVALLYVMFLIGMAFSALIIGALLRDFSELRLVQVVQGTAVVTLLLNLIALWRQERVRPMSKEERAEPRPLFKDAWNDLVSGGSAGRLLLVVFLGTMAFNMQDVLLEPYGGEILGLSVSATTLMTATWAAGALVGFAIAARWLAAGISTYRMAARGILFGLAAFSAVIFAAPFNSPWLFYIGATFIGFGGGLFGVATLTAAMTLPTTGMAGRGLALGAWGAAQATGAGLSIFIGGALRDLVNHAAGNGILGEALATPTTGYSVVYHTEIGLLFVTLIVLGPLVKVRAMTTETSAKLELADFPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R0J7</accession>
    <name>A0A1M5R0J7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Nitroreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2436</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the nitroreductase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19882.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901404.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2436"/>
    <dbReference type="EnsemblBacteria" id="SHH19882">
        <property type="protein sequence ID" value="SHH19882"/>
        <property type="gene ID" value="SAMN05444003_2436"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02149">
        <property type="entry name" value="NfsB-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.109.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033878">
        <property type="entry name" value="NfsB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029479">
        <property type="entry name" value="Nitroreductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000415">
        <property type="entry name" value="Nitroreductase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00881">
        <property type="entry name" value="Nitroreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55469">
        <property type="entry name" value="SSF55469"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nitroreductase" evidence="2">
        <location>
            <begin position="11"/>
            <end position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH19882.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="213" mass="23429" checksum="2E480F00636C6B69" modified="2017-03-15" version="1">MTVKPLHDLLNWRYATKKMDAAKAVPQEKVDAIIEAVRMAPTSSGTQPFELLVVRNAEIRRKIAEAAGGQAQITDGSHLLVFAAWDNYTAERIDEVVGLNVEARGDLPMLHAYYDNLKANYLPRDAETNYAHAARQAYIALGIALVAAAEQEVDSTPMEGFDPDAVDAILGLKERGLRSVVLMPLGYRDPAGDWLLPMGKVRKSRDTIVTEVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RC87</accession>
    <name>A0A1M5RC87_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Pseudouridine synthase</fullName>
            <ecNumber evidence="3">5.4.99.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2497</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Responsible for synthesis of pseudouridine from uracil.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>a uridine in RNA = a pseudouridine in RNA</text>
            <dbReference type="Rhea" id="RHEA:48348"/>
            <dbReference type="Rhea" id="RHEA-COMP:12068"/>
            <dbReference type="Rhea" id="RHEA-COMP:12069"/>
            <dbReference type="ChEBI" id="CHEBI:65314"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the pseudouridine synthase RluA family.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.-" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23750.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901581.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2497"/>
    <dbReference type="EnsemblBacteria" id="SHH23750">
        <property type="protein sequence ID" value="SHH23750"/>
        <property type="gene ID" value="SAMN05444003_2497"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140098">
        <property type="term" value="F:catalytic activity, acting on RNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009982">
        <property type="term" value="F:pseudouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034470">
        <property type="term" value="P:ncRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001522">
        <property type="term" value="P:pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02869">
        <property type="entry name" value="PseudoU_synth_RluA_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020103">
        <property type="entry name" value="PsdUridine_synth_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006225">
        <property type="entry name" value="PsdUridine_synth_RluC/D"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006224">
        <property type="entry name" value="PsdUridine_synth_RluC/D_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006145">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00849">
        <property type="entry name" value="PseudoU_synth_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55120">
        <property type="entry name" value="SSF55120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00005">
        <property type="entry name" value="rluA_subfam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01129">
        <property type="entry name" value="PSI_RLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PseudoU_synth_2" evidence="4">
        <location>
            <begin position="21"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010876"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR606225-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU362028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH23750.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="215" mass="24326" checksum="B2D79C5833E0BE69" modified="2017-03-15" version="1">MSDAYNPPGDPLVLLHDDHEVLLVDKPSGLLSVPGKGAHLQDCLIMRVQAVFPTALLVHRLDRDTSGVMIFALTPHAQRHLGLQFEKRQTKKTYVARVWGCLEEETGTVDLPLIVDWPNRPKQMVDHENGKQAVTDWRVIRYSAEETRVRLMPKTGRSHQLRVHMQAIGHPILGDPFYSEGAARDHPRLMLHSETLQFRHPDGGKGMRITAKCPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RK93</accession>
    <name>A0A1M5RK93_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF2062 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2635</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26641.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901792.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2635"/>
    <dbReference type="EnsemblBacteria" id="SHH26641">
        <property type="protein sequence ID" value="SHH26641"/>
        <property type="gene ID" value="SAMN05444003_2635"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018639">
        <property type="entry name" value="DUF2062"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09835">
        <property type="entry name" value="DUF2062"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="50"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="80"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="166"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="domain" description="DUF2062" evidence="2">
        <location>
            <begin position="27"/>
            <end position="200"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09835"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH26641.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="213" mass="23952" checksum="54088A9E0DA0B6EC" modified="2017-03-15" version="1">MVFKRRDRRPIWQIAAEFIYPKGGWGRAFEYVKHRVRRLPDTPEKIARGVMAGVATSFTPFFGLHFVVAALLAKLLRGNILAALMGTFFGNPLTYVPIAWASLTTGHLLLGSNMDEDLLQEPSQIECGLGCQFSTALSDLWYNFLAAFTDAEADWSSLIVFYNETFYPFMIGSIIPGTIAGIVAYYVTVPIVAAYQNSRRKRLREKLSKLNNQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RMP5</accession>
    <name>A0A1M5RMP5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2670</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH27450.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901846.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2670"/>
    <dbReference type="EnsemblBacteria" id="SHH27450">
        <property type="protein sequence ID" value="SHH27450"/>
        <property type="gene ID" value="SAMN05444003_2670"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH27450.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="293" mass="32342" checksum="166F8CE1D79C94F9" modified="2017-03-15" version="1">MAKSPNVILHIGVHKTATTHLQMALQAARPALSAQGVAYYGPSQLRKDGQFLPERLGLPFAKVQSNVDQKAEWQAMVGDAHRVVLSEENFVGVLNRKGAQLVTPLYANAVERIAALASVTAPNGVDVFLSIRAPATFLNSAYSQILMAGGKVRPETFKAQNPLPAVDWVKYINRLTRIQSLRSLTVWPYEDYAAHFLKIVSLMVGSEPAKAVQWESEWAHRSLSARAVAELLELDQADRTPRKAKLVKSQFPVSEQFAQFDVFSGEDHAQSGVLYADQIRAIEQMPKVTLLRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RV51</accession>
    <name>A0A1M5RV51_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Monosaccharide ABC transporter substrate-binding protein, CUT2 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2711</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30124.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901963.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2711"/>
    <dbReference type="EnsemblBacteria" id="SHH30124">
        <property type="protein sequence ID" value="SHH30124"/>
        <property type="gene ID" value="SAMN05444003_2711"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025997">
        <property type="entry name" value="SBP_2_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13407">
        <property type="entry name" value="Peripla_BP_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5011979709" evidence="1">
        <location>
            <begin position="21"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="domain" description="Peripla_BP_4" evidence="2">
        <location>
            <begin position="24"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13407"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH30124.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="312" mass="33250" checksum="D19AE31044B12E82" modified="2017-03-15" version="1">MKKYLLATGLTALMATSAASQEIGATFSRFDDNWLTVLRTGMVEYAGTIDGLSYQQEDATDDLAKQIDQVKNFVAQGVDAIIVNIVDTSAGAAVSAAAGDVPLVYVNREPDNVNELPPTQAFVASNEIESGTLSAFEICKNLRAEGKGNGARGYLMNGQLSNQAAVQRSKDVYDVIGMDMCNFMEIIDEAPANWSRDEAQDLMTNWMSSGEPFDFVLANNDEMAIGAIQAMKAAGIDMADVQVGGVDASQDALLAMAAGDYDVTVFQDSVGQGTGSIDAALKLIAGEDVDTKVYIPFVLVTPENMGEFMSRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RXJ3</accession>
    <name>A0A1M5RXJ3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Signal recognition particle protein</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Fifty-four homolog</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">ffh</name>
        <name evidence="11" type="ORF">SAMN05444003_2754</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Part of the signal recognition particle protein translocation system, which is composed of SRP and FtsY. SRP is a ribonucleoprotein composed of Ffh and a 4.5S RNA molecule.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="8">The SRP-RNC complex is targeted to the cytoplasmic membrane.</text>
    </comment>
    <comment type="domain">
        <text evidence="8">Composed of three domains: the N-terminal N domain, which is responsible for interactions with the ribosome, the central G domain, which binds GTP, and the C-terminal M domain, which binds the RNA and the signal sequence of the RNC.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the GTP-binding SRP family. SRP54 subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31087.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902028.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2754"/>
    <dbReference type="EnsemblBacteria" id="SHH31087">
        <property type="protein sequence ID" value="SHH31087"/>
        <property type="gene ID" value="SAMN05444003_2754"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048500">
        <property type="term" value="C:signal recognition particle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008312">
        <property type="term" value="F:7S RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006614">
        <property type="term" value="P:SRP-dependent cotranslational protein targeting to membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00306">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036891">
        <property type="entry name" value="Signal_recog_part_SRP54_M_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013822">
        <property type="entry name" value="Signal_recog_particl_SRP54_hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004125">
        <property type="entry name" value="Signal_recog_particle_SRP54_M"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004780">
        <property type="entry name" value="SRP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022941">
        <property type="entry name" value="SRP54"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000897">
        <property type="entry name" value="SRP54_GTPase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042101">
        <property type="entry name" value="SRP54_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11564">
        <property type="entry name" value="PTHR11564"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11564:SF7">
        <property type="entry name" value="PTHR11564:SF7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00448">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02881">
        <property type="entry name" value="SRP54_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02978">
        <property type="entry name" value="SRP_SPB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00962">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00963">
        <property type="entry name" value="SRP54_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47446">
        <property type="entry name" value="SSF47446"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00959">
        <property type="entry name" value="ffh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00300">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 8" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="3 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 8" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 8" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="6 8" id="KW-0733">Signal recognition particle</keyword>
    <feature type="domain" description="SRP54" evidence="10">
        <location>
            <begin position="270"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="475"/>
            <end position="501"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="108"/>
            <end position="115"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="191"/>
            <end position="195"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="249"/>
            <end position="252"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005450"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023135"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS00300"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH31087.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="501" mass="53602" checksum="83D1BDF27638EDEE" modified="2017-03-15" version="1">MFENLSERLGGVFDRLTKQGALSEDDVKTALREVRVALLEADVSLPVARDFIKAVQDKATGQSVTKSVTPGQQVVKIVHDELQHILTGDEDPGALKIDNPPAPILMVGLQGSGKTTTTAKLAKRLKEKEGKRVLMASLDVNRPAAMEQLAILGVQIGVDTLPIVKGEDPVAIAKRAKTQASLGGYDVYMLDTAGRLHIDQELIAQAAAVRDVANPRETLLVVDGLTGQDAVNVAQEFDDKIGVSGVVLTRMDGDGRGGAALSMRAITGKPIRFVGLGEKMDAIEVFEPSRIAGRILGMGDIVSLVEKAQETIEAEQAEKMMKRFQKGRFNMNDLKMQLEQMIKMGGMEGMMGMMPGMGKMQKQMEAAGMDDSILKRQIALINSMTKRERAQPELLQASRKKRIAKGAGLEVSELNKLLKQQRQMADMMKKMGKMGKGGMLKQAMKGMMGKGGGMPGGMPDMNDPKAMEQAAKALGQMPGGGLPGLGGGGLPPGLSGFGKKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RYM2</accession>
    <name>A0A1M5RYM2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 7">50S ribosomal protein L31</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_2746</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Binds the 23S rRNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902016.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2746"/>
    <dbReference type="EnsemblBacteria" id="SHH30903">
        <property type="protein sequence ID" value="SHH30903"/>
        <property type="gene ID" value="SAMN05444003_2746"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.830.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034704">
        <property type="entry name" value="L28p-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002150">
        <property type="entry name" value="Ribosomal_L31"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042105">
        <property type="entry name" value="Ribosomal_L31_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33280">
        <property type="entry name" value="PTHR33280"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01197">
        <property type="entry name" value="Ribosomal_L31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01249">
        <property type="entry name" value="RIBOSOMALL31"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143800">
        <property type="entry name" value="SSF143800"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00105">
        <property type="entry name" value="L31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01143">
        <property type="entry name" value="RIBOSOMAL_L31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 7 8" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011838"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00029551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000564"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH30903.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="73" mass="8067" checksum="5D78C562DE43A079" modified="2017-03-15" version="1">MKKDTHPDYHIIDVKMTDGTIVQMKSTYGKEGDTLALDVDPTVHPAWTGGNTRLLDQGGRVSKFKNKYAGLGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S1G1</accession>
    <name>A0A1M5S1G1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2801</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32168.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902095.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2801"/>
    <dbReference type="EnsemblBacteria" id="SHH32168">
        <property type="protein sequence ID" value="SHH32168"/>
        <property type="gene ID" value="SAMN05444003_2801"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="66"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH32168.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="88" mass="10141" checksum="C9C0B3EAFD6B5C70" modified="2017-03-15" version="1">MGFVRLVIFGFLLLSVIYLSLSWFTRSLRRESLENEWDEDQPEGISRDDYVAAGIKEYNDGLRPKLLLLVYVIPTVLIATIVYLTNSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SFZ5</accession>
    <name>A0A1M5SFZ5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2950</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37464.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902368.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2950"/>
    <dbReference type="EnsemblBacteria" id="SHH37464">
        <property type="protein sequence ID" value="SHH37464"/>
        <property type="gene ID" value="SAMN05444003_2950"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH37464.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="81" mass="9223" checksum="442C1743DD6AD27A" modified="2017-03-15" version="1">MFTIEHEFDATIVTLMDEADAPLKEDVIIHAFEDCVTVTQYDPRLKEDRVVTLSLTQLRDLGAALDLPEGVYQLREEAEKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SHD1</accession>
    <name>A0A1M5SHD1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">NAD-dependent protein deacylase</fullName>
            <ecNumber evidence="3">2.3.1.286</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Regulatory protein SIR2 homolog</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">cobB</name>
        <name evidence="5" type="ORF">SAMN05444003_2969</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>H2O + N(6)-acetyl-L-lysyl-[protein] + NAD(+) = 2''-O-acetyl-ADP-D-ribose + L-lysyl-[protein] + nicotinamide</text>
            <dbReference type="Rhea" id="RHEA:43636"/>
            <dbReference type="Rhea" id="RHEA-COMP:9752"/>
            <dbReference type="Rhea" id="RHEA-COMP:10731"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:17154"/>
            <dbReference type="ChEBI" id="CHEBI:29969"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:61930"/>
            <dbReference type="ChEBI" id="CHEBI:83767"/>
            <dbReference type="EC" id="2.3.1.286"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>H2O + N(6)-succinyl-L-lysyl-[protein] + NAD(+) = 2''-O-succinyl-ADP-D-ribose + L-lysyl-[protein] + nicotinamide</text>
            <dbReference type="Rhea" id="RHEA:47668"/>
            <dbReference type="Rhea" id="RHEA-COMP:9752"/>
            <dbReference type="Rhea" id="RHEA-COMP:11877"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:17154"/>
            <dbReference type="ChEBI" id="CHEBI:29969"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:87830"/>
            <dbReference type="ChEBI" id="CHEBI:87832"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="3">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="3">2 residues (Tyr-52 and Arg-55) present in a large hydrophobic pocket are probably involved in substrate specificity. They are important for desuccinylation activity, but dispensable for deacetylation activity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the sirtuin family. Class III subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.286" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37875.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902397.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2969"/>
    <dbReference type="EnsemblBacteria" id="SHH37875">
        <property type="protein sequence ID" value="SHH37875"/>
        <property type="gene ID" value="SAMN05444003_2969"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070403">
        <property type="term" value="F:NAD+ binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034979">
        <property type="term" value="F:NAD-dependent protein deacetylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036054">
        <property type="term" value="F:protein-malonyllysine demalonylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036055">
        <property type="term" value="F:protein-succinyllysine desuccinylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006476">
        <property type="term" value="P:protein deacetylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01412">
        <property type="entry name" value="SIRT5_Af1_CobB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1600.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01121">
        <property type="entry name" value="Sirtuin_ClassIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003000">
        <property type="entry name" value="Sirtuin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026591">
        <property type="entry name" value="Sirtuin_cat_small_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027546">
        <property type="entry name" value="Sirtuin_class_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026590">
        <property type="entry name" value="Ssirtuin_cat_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02146">
        <property type="entry name" value="SIR2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="SSF52467"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50305">
        <property type="entry name" value="SIRTUIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 3" id="KW-0520">NAD</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Deacetylase sirtuin-type" evidence="4">
        <location>
            <begin position="1"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="3">
        <location>
            <position position="104"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="52"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="55"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="86"/>
            <end position="89"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="112"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="115"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="131"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="134"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="170"/>
            <end position="172"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="196"/>
            <end position="198"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="214"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50305"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH37875.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="230" mass="24719" checksum="834706610B6094E3" modified="2017-03-15" version="1">MKIVILTGAGVSAESGMGTFQDENGLWTQVNIEDVATPEAFARNPAKVHALYNARRSNCLKAEPNAAHFALAELQNSRHDVTLVTQNIDNLHERGGGTDVIHMHGELMKALCASCGAVWPAPEAMDKDDPCPSCGKPQTRPDIVWFGEIPYHMDRIERALSECDLFVAIGTSGAVYPAAGFVQMADAFGADTLELNLAPSDVQSAFAAHRYGPATEVVPQWVADMLGDPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SHU6</accession>
    <name>A0A1M5SHU6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2978</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH38069">
        <property type="protein sequence ID" value="SHH38069"/>
        <property type="gene ID" value="SAMN05444003_2978"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH38069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="58" mass="6355" checksum="367A042FF9E0E6C5" modified="2017-03-15" version="1">MIVVEDRKRQSGSEGTFGELSIIGDRTGNSTIFNEGVRGLRPCTDRVYAPGTFLFCEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SI72</accession>
    <name>A0A1M5SI72_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized membrane protein YoaT, DUF817 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2986</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902420.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH38244">
        <property type="protein sequence ID" value="SHH38244"/>
        <property type="gene ID" value="SAMN05444003_2986"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008535">
        <property type="entry name" value="DUF817"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05675">
        <property type="entry name" value="DUF817"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF009141">
        <property type="entry name" value="UCP009141"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="36"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="61"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="123"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="156"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="182"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="206"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="251"/>
            <end position="268"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH38244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="288" mass="32772" checksum="A5D18EA70ACF4A5E" modified="2017-03-15" version="1">MTADTRTIEQHLGDKARSVLPAPVAELTLFILKQGWACLFGICLLAAIIGTKMIWEPHWIIARYDALLVIAVSLQVAMLTVKLETWKEARVILLFHLTGTAMEVFKVQAGSWSYPEPAFFKVYGVPLFSGFMYAAVGSFMARVIRLFDMRFTPFPPAWAHFALATVIYINFFAHHFVPDMRYVLFALTIFLYLRTRIWFRIGTNWYWMTLPVAAFFSSIFLWLAENIGTRTGTWLYAGQSVLEPVNIAKMGSWYLLLFVSFATVTLVFRDVLGGPKPSLAPTYTKPPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SMI6</accession>
    <name>A0A1M5SMI6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Dihydroxy-acid dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3025</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the IlvD/Edd family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH39143.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902474.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3025"/>
    <dbReference type="EnsemblBacteria" id="SHH39143">
        <property type="protein sequence ID" value="SHH39143"/>
        <property type="gene ID" value="SAMN05444003_3025"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016836">
        <property type="term" value="F:hydro-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019752">
        <property type="term" value="P:carboxylic acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044238">
        <property type="term" value="P:primary metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.30.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042096">
        <property type="entry name" value="Dihydro-acid_dehy_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000581">
        <property type="entry name" value="DiOHA_6PGluconate_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020558">
        <property type="entry name" value="DiOHA_6PGluconate_deHydtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037237">
        <property type="entry name" value="IlvD/EDD_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00920">
        <property type="entry name" value="ILVD_EDD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143975">
        <property type="entry name" value="SSF143975"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00886">
        <property type="entry name" value="ILVD_EDD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006486"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH39143.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="598" mass="64847" checksum="E281513EB2AAB624" modified="2017-03-15" version="1">MAKKIGVSDLRSRKWFMNEDNMEMTALYLERYLNYGLTREELQSGKPIIAIAQTGSDLSPCNRHHLELTKRVRDGIISMGGTPIEVPVHPIQETGKRPTASLDRNLAYLSLVESLYGYPIDGVVLNIGCDKTTPALLMAAATVNIPAIALSVGPMLNGWWKGERAGSGTVIWKAREMLAAGEIDDEEFMEIAAASAPSVGYCNTMGTATTMNSLAEALGMQLPGSAAIPAPYRERGQISYETGKRIVEMVWEDLRPSDIMTREAFENAIVINSAIGGSTNAPIHLNGIARHLGVPLDNNDWQNIGHHVPLLVNLMPAGKYLGEDYQQAGGVPAVVGELIAGDLLPHPNAVTSNGQSMGENCKARRSSNTDVIMTTEAPLKEQAGFINLSGNLFDSAIMKTSVISEQFRQTYLSNPDDPNAFEGRAVVFDGPEDFHHRIDDPAENIDENCIMFMRGAGPKGYPGGAEVVNMRAPAYLIKKGVEALPCVGDGRQSGTSGSPSILNAAPEAAAGGGLALLKNGDRVRIDLNKCTADMLVPLDELAERARTLEENGYPHPESQTPWQQYFRELTGQFDKGMTLRDADTYRDISRKGLPRDSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SR39</accession>
    <name>A0A1M5SR39_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Carbohydrate ABC transporter membrane protein 1, CUT1 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_3050</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH40910.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902573.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3050"/>
    <dbReference type="EnsemblBacteria" id="SHH40910">
        <property type="protein sequence ID" value="SHH40910"/>
        <property type="gene ID" value="SAMN05444003_3050"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="7"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="114"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="155"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="206"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="250"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="308"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="118"/>
            <end position="330"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH40910.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="343" mass="38053" checksum="25E0848BD57C3433" modified="2017-03-15" version="1">MKHKTFFWFILPTLSAMLLFIALPIVSVAIQSLYIEHEQVLVVTENCGPFGCTEATAVDLEATASLREEQPLGRFNGLDTYTNRAHLAFAEIGESWNTTETWSAFFSEVLDLPFYWALAFTLTYTFVVTPFVLVLGLAIAVAVNNLPKMFKGPTIFVSLLPMIVTPLVGALILFWMVDGDGIIGATLQWITGDPTLSLKATTSLNWVMLIVYGIWSSLPFAFIVFYAGLQTVPSETMEAAMIDGASKWQSMRHVVVPHLMPLVIFISLIQLMDNFRVFEPIISFQAEAHARSLSWIIYNDLIEAGNPLYGSAGASSILTIIGVAFLLVPVLIRTWRDFNSKPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SRQ7</accession>
    <name>A0A1M5SRQ7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3065</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH41175">
        <property type="protein sequence ID" value="SHH41175"/>
        <property type="gene ID" value="SAMN05444003_3065"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH41175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="55" mass="6642" checksum="9B71F0B16586A98E" modified="2017-03-15" version="1">MDRHRDEEDQPQTRENECCTEKAELMRMWQSSTVADGFSLEWTLDHLERSKELRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SSK1</accession>
    <name>A0A1M5SSK1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Multidrug resistance efflux pump</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_3081</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41486.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH41486">
        <property type="protein sequence ID" value="SHH41486"/>
        <property type="gene ID" value="SAMN05444003_3081"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039562">
        <property type="entry name" value="MFP_biotin_lipoyl_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13533">
        <property type="entry name" value="Biotin_lipoyl_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="144"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="domain" description="Biotin_lipoyl_2" evidence="3">
        <location>
            <begin position="188"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="224"/>
            <end position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH41486.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="471" mass="53199" checksum="2C91F55DCA643E12" modified="2017-03-15" version="1">MRVRHERPMSDLSYSVRAPLKLTLESGDEICIKSWSLNGVQYPEKTDILPKAGLLSIPFQGVDIQFDVRFKDGSHRRELLFDGLSGRQRETLAIFYRSILSGKMASTEEVITSLDTPVDLVPMTETNEEEIEGRAKQSPRILRVIWNVSLYLVLAVIVFGVIGSQVINRLAHVELLQARIVAPMTVLHTSQSGFVDQILVEPGQSVEQGQTLVHLNNPETAAALDDVRANIARYERLIFEAEQRLAEHRKQIEASREHLKEALRLVVAIVGHENFAATTGTLSAQEAWNEIKRFDENRAAGIGRQFEMERHLTHEVEDLRTYWSRLKRDLGNAKNVNDAVDIVAPTDGVIVSVDVFENQFLDRGVRVIEIEENTPRLVKAWLSETRSDMIFEGMKATVRFNAGLEAKSSVGEIVNVTAAIDPDISKDFGLIVTVHLNDLSTEEMRQMFRPNAPVQMRAKKRWLSFLPWIAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5STD4</accession>
    <name>A0A1M5STD4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, HxlR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3098</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41785.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902644.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH41785">
        <property type="protein sequence ID" value="SHH41785"/>
        <property type="gene ID" value="SAMN05444003_3098"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002577">
        <property type="entry name" value="HTH_HxlR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01638">
        <property type="entry name" value="HxlR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51118">
        <property type="entry name" value="HTH_HXLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH hxlR-type" evidence="1">
        <location>
            <begin position="23"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH41785.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="120" mass="13561" checksum="B527FAA2F4B4DB2B" modified="2017-03-15" version="1">MRARVKQDEQGRRHAAEACIEPCAIESGMRIIGGKWTGSILWHLKDGPVRFNDLARMIGGASKKMIVERLRQLEAQGLVRREVVDSAPVSVQYEITDFGRTALTFLDELRKWSEGLPRTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SU67</accession>
    <name>A0A1M5SU67_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Alginate O-acetyltransferase complex protein AlgJ</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_3083</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="2">Glycan biosynthesis; alginate biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41523.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902620.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3083"/>
    <dbReference type="EnsemblBacteria" id="SHH41523">
        <property type="protein sequence ID" value="SHH41523"/>
        <property type="gene ID" value="SAMN05444003_3083"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00286"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042121">
        <property type="term" value="P:alginic acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031811">
        <property type="entry name" value="ALGX/ALGJ_SGNH-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16822">
        <property type="entry name" value="ALGX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0016">Alginate biosynthesis</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="ALGX" evidence="4">
        <location>
            <begin position="80"/>
            <end position="333"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005182"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022841"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF16822"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH41523.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="343" mass="38316" checksum="EC45B53A5E758266" modified="2017-03-15" version="1">MGIGYSKSLGLAALLIATVGLGCVAMIQTKFIQPSKSIWGGQYQSSVEADFIDHFPLSEISRDIWTAFQLVILDQTHNDVIRTTDNWLFTAEEFRQPNSDVSFDDELDSVSAQLQASGTKLITIVVPDKARIYAEKLPHARMDSLEMRYDSVLNHLKDAQIQTLDLRPIFLDLKSHAAPYLRTDTHWSPLGSETIAREVASLLINSLDTHNIYRTTWSDPSPFNGDLMTFIETGFLSNLIDFPKESVSLALTEQVGGEMSLFDNFEIPVTLVGTSFSANPAFNFDGFLKQHLGVDVLNVAQIGSGPFEPMRDYLASDDFISAPPKIVIWEIPERYISTEETDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SVN0</accession>
    <name>A0A1M5SVN0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">L-glutamine-binding protein /L-glutamate-binding protein /L-aspartate-binding protein /L-asparagine-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_3147</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42621.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902718.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3147"/>
    <dbReference type="EnsemblBacteria" id="SHH42621">
        <property type="protein sequence ID" value="SHH42621"/>
        <property type="gene ID" value="SAMN05444003_3147"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001638">
        <property type="entry name" value="Solute-binding_3/MltF_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00497">
        <property type="entry name" value="SBP_bac_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00062">
        <property type="entry name" value="PBPb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012206395" evidence="2">
        <location>
            <begin position="23"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="domain" description="PBPb" evidence="3">
        <location>
            <begin position="33"/>
            <end position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH42621.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="339" mass="35516" checksum="E7ABDE170E7A38CB" modified="2017-03-15" version="1">MKKTVLFGALTVAGLAAAGAQAATLDDVQARGKLNCGVTTGVPGFGEPDANGVWQGFDVAVCRAVAAAVLGDPMAVEFVPTTGKTRFTALAAGEIDMLARNTTWTFSRDVDLKFEFVGVNYYDGQGFMVPKALGVNSAKELDGATVCIQTGTTTELNLADFFRSNNISYEPVPIETGSEAVQLFTAGSCDVYTTDASALAAQRANFANPGDYVVLPEIVSKEPLGPLVRHGDNEWGDIVRWTLNALITAEELGVTSDNIDELASAPGSNPEVNRLLGTEGTLGEMLGLSADFAKNAISAGGNYGEIFANNIGESTNIGLARGLNAQWTEGGLIYSPPFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SVP9</accession>
    <name>A0A1M5SVP9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_3117</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42083.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902670.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3117"/>
    <dbReference type="EnsemblBacteria" id="SHH42083">
        <property type="protein sequence ID" value="SHH42083"/>
        <property type="gene ID" value="SAMN05444003_3117"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="157"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="5">
        <location>
            <begin position="247"/>
            <end position="457"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH42083.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="461" mass="50882" checksum="EFB6614A367F3F37" modified="2017-03-15" version="1">MNSLSGRFLILTIIFVMLAEVFIFVPSVSRFRQDYLIDRLERAQIASLSLEADDMISPDLEAELLENAEVFNVVLRRDEIRRLALSSPLPLPIEESFDLRDPTAMTLIGDAFATLLDPEDKVIRVIGNPVRDGGLLIEITMMQMPLREAMIDYGQNILVLSAVISIITAGLLFVSVQILVVRPTKSVVEQMQRYAAAPEDARRIIEPQAGVKELRDAEEALQLMQTQLTGALKQKERLAQLGSAVAKVSHDLRNILTSAQLFTDRIESSDDPLVKRMVPKLVNSITRAVNLCETTLAFGRVDEPAPTLTITELHPIVADVLDSERLSADAADITFVNEVPVSMRIRGDGEQLFRVINNLVRNARQAIAATRQPGTISVRGWEDDQAWHITVCDTGPGLPVKAQEHLFQPFQGGVRKGGTGLGMVISADLIRGHGGKLELERTDENGTVFCIRLPKADVDLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SX13</accession>
    <name>A0A1M5SX13_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">30S ribosomal protein S8</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpsH</name>
        <name evidence="7" type="ORF">SAMN05444003_3170</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Part of the 30S ribosomal subunit. Contacts proteins S5 and S12.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the universal ribosomal protein uS8 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH43057.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902755.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3170"/>
    <dbReference type="EnsemblBacteria" id="SHH43057">
        <property type="protein sequence ID" value="SHH43057"/>
        <property type="gene ID" value="SAMN05444003_3170"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01302_B">
        <property type="entry name" value="Ribosomal_S8_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000630">
        <property type="entry name" value="Ribosomal_S8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035987">
        <property type="entry name" value="Ribosomal_S8_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11758">
        <property type="entry name" value="PTHR11758"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00410">
        <property type="entry name" value="Ribosomal_S8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56047">
        <property type="entry name" value="SSF56047"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00053">
        <property type="entry name" value="RIBOSOMAL_S8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00016791"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01302"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003660"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH43057.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="130" mass="14275" checksum="EBD26413BF9A9569" modified="2017-03-15" version="1">MNDPIGDMLTRIRNSHMRGKTDVETPASKLRAWVLDVLADEGYIRGYEKVDGKDGHPALRIELKYHDGMPVIRELKRVSKPGRRVYLGANDIPEVRQGLGVSIVSTSKGVMSDANARAANVGGEVLCTVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T7I0</accession>
    <name>A0A1M5T7I0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_3265</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46343.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902939.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3265"/>
    <dbReference type="EnsemblBacteria" id="SHH46343">
        <property type="protein sequence ID" value="SHH46343"/>
        <property type="gene ID" value="SAMN05444003_3265"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="4"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="36"/>
            <end position="43"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH46343.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="228" mass="24594" checksum="BE53DB0E41640653" modified="2017-03-15" version="1">MSLLSLESLTASYGPVPALFGVDLELGAGEVMSLMGRNGMGKTTTVKAICRMISSNGGLHFNGNTLHKLPSHRVARLGIGLVPEGRRCFYNLTVKENLIAAARTGPWDLKTVGELFPRLAERRNQGAAFLSGGEQQMLAVGRALMTNPKLLILDEATEGLAPIVRQEIWAAIKRIKSETGMAIILIDKNLKEMAAVSDYAAILTRGKTVWSGAMPSLTTEITQRYIGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TAI1</accession>
    <name>A0A1M5TAI1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">C4-dicarboxylate transporter, DctQ subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_3302</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000009">
        <property type="protein sequence ID" value="SHH47688.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072903013.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000009.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3302"/>
    <dbReference type="EnsemblBacteria" id="SHH47688">
        <property type="protein sequence ID" value="SHH47688"/>
        <property type="gene ID" value="SAMN05444003_3302"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007387">
        <property type="entry name" value="TRAP_DctQ"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35011">
        <property type="entry name" value="PTHR35011"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04290">
        <property type="entry name" value="DctQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="42"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="87"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="138"/>
            <end position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH47688.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="186" mass="21345" checksum="27C0A93919BC0F8B" modified="2017-03-15" version="1">MKTLSKWFTRGTEFIAAMCLAAIFITFLLQIIFRYVPFLEPIGWSVVLISLLWVFVIFFGCSFIVQEKDHVTFDVLYLAAPRPARKVMALITAVIMVAAMVYSFPAVWETVFGNRLMELKKIQTIRIPITGDKIAIKWLFAPFVMFMVVVTIRYIWRIYTVLKFGPPETEMEAIIAAEAPSDEVSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TCG5</accession>
    <name>A0A1M5TCG5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Threonine dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3323</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000011">
        <property type="protein sequence ID" value="SHH48409.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072903046.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000011.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3323"/>
    <dbReference type="EnsemblBacteria" id="SHH48409">
        <property type="protein sequence ID" value="SHH48409"/>
        <property type="gene ID" value="SAMN05444003_3323"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ADH_N" evidence="2">
        <location>
            <begin position="25"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="domain" description="ADH_zinc_N" evidence="1">
        <location>
            <begin position="170"/>
            <end position="283"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00107"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH48409.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="326" mass="34457" checksum="A5C8F8FB8D38E46C" modified="2017-03-15" version="1">MKALVYDGVETLGYRDVPDATPQADEHLIRVDAVGICGSDMHAYLGHDARRPAPLILGHEAAGVIVGGPKDGMRVTINPLVINPDSAASRAGRENLCPDRQIISMPPREGAFAELVAMPERNLVQVPDHVPLTTAALVEPLAVSWHTVRLTLEAIHPAMDRTALVIGGGAIGLAAALAFKAQGINDVTVVEPNPERRAFLRDLCGQNTVAAAEGKYPMVVDAVGFSATRAVASAHTQPGGVIAHVGLGDSDGGFDIRRATLQEITFIGTYTYTAQDFRDTAEALFDGRLGDVNWIELRGLSEGAQAFKDIRAGQVAAPKIVLLPGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L5G7</accession>
    <name>A0A1M5L5G7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">VOC domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0113</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60241.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898468.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0113"/>
    <dbReference type="EnsemblBacteria" id="SHG60241">
        <property type="protein sequence ID" value="SHG60241"/>
        <property type="gene ID" value="SAMN05444003_0113"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004360">
        <property type="entry name" value="Glyas_Fos-R_dOase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00903">
        <property type="entry name" value="Glyoxalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="3"/>
            <end position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG60241.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="137" mass="15291" checksum="07D514ECE2A6EC87" modified="2017-03-15" version="1">MPHPFHLAYHVTDLGDAREFYSNALGAIEGRSTDTWVDFDFFGHQLSLHLGKPFENASTGKVGDHLVPMPHFGIILPLEDWTALAGRLEERQTDFIIAPSVRFKGEPGEQWTMFFRDPSGNPIEVKGFADTTGIFAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L8N3</accession>
    <name>A0A1M5L8N3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1 7">Transcriptional regulator MraZ</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">mraZ</name>
        <name evidence="10" type="ORF">SAMN05444003_0164</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="7">Forms oligomers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
            <location evidence="7">Nucleoid</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the MraZ family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61371.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898528.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0164"/>
    <dbReference type="EnsemblBacteria" id="SHG61371">
        <property type="protein sequence ID" value="SHG61371"/>
        <property type="gene ID" value="SAMN05444003_0164"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009295">
        <property type="term" value="C:nucleoid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd16321">
        <property type="entry name" value="MraZ_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd16320">
        <property type="entry name" value="MraZ_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1550.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01008">
        <property type="entry name" value="MraZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003444">
        <property type="entry name" value="MraZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035644">
        <property type="entry name" value="MraZ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020603">
        <property type="entry name" value="MraZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035642">
        <property type="entry name" value="MraZ_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038619">
        <property type="entry name" value="MraZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007159">
        <property type="entry name" value="SpoVT-AbrB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037914">
        <property type="entry name" value="SpoVT-AbrB_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34701">
        <property type="entry name" value="PTHR34701"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02381">
        <property type="entry name" value="MraZ"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89447">
        <property type="entry name" value="SSF89447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51740">
        <property type="entry name" value="SPOVT_ABRB"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 7 8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="6 7" id="KW-0804">Transcription</keyword>
    <keyword evidence="4 7" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="SpoVT-AbrB" evidence="9">
        <location>
            <begin position="8"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="domain" description="SpoVT-AbrB" evidence="9">
        <location>
            <begin position="92"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00013860"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51740"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG61371.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="164" mass="18460" checksum="31B4F0751996006A" modified="2017-03-15" version="1">MTLGFTGEYTQKVDGKGRMSVPADFRRVLEAGDPEWTTGLQAGLYLLYGDHLKETLHAYTVEEFRKTMADINAMPKGDPNKRALSHLIIGQSMRLDVDKDGRVVMPLKQREKLGIKDGELFFRGMGDHFEVWKAETFHATIGASLQDWLSDKPDDFDPLSLLGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L9C1</accession>
    <name>A0A1M5L9C1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 13 14">UDP-N-acetylmuramoylalanine--D-glutamate ligase</fullName>
            <ecNumber evidence="5 13 14">6.3.2.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">D-glutamic acid-adding enzyme</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="primary">murD</name>
        <name evidence="17" type="ORF">SAMN05444003_0172</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="13 14">Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 13 14">
            <text>ATP + D-glutamate + UDP-N-acetyl-alpha-D-muramoyl-L-alanine = ADP + H(+) + phosphate + UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamate</text>
            <dbReference type="Rhea" id="RHEA:16429"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29986"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:83898"/>
            <dbReference type="ChEBI" id="CHEBI:83900"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.9"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 13 14">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 13 14">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 13">Belongs to the MurCDEF family.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.9" evidence="5 13 14"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61566.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898540.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0172"/>
    <dbReference type="EnsemblBacteria" id="SHG61566">
        <property type="protein sequence ID" value="SHG61566"/>
        <property type="gene ID" value="SAMN05444003_0172"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008764">
        <property type="term" value="F:UDP-N-acetylmuramoylalanine-D-glutamate ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00639">
        <property type="entry name" value="MurD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036565">
        <property type="entry name" value="Mur-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004101">
        <property type="entry name" value="Mur_ligase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036615">
        <property type="entry name" value="Mur_ligase_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013221">
        <property type="entry name" value="Mur_ligase_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005762">
        <property type="entry name" value="MurD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02875">
        <property type="entry name" value="Mur_ligase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08245">
        <property type="entry name" value="Mur_ligase_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53244">
        <property type="entry name" value="SSF53244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53623">
        <property type="entry name" value="SSF53623"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01087">
        <property type="entry name" value="murD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11 13 14" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="8 13 14" id="KW-0132">Cell division</keyword>
    <keyword evidence="9 13 14" id="KW-0133">Cell shape</keyword>
    <keyword evidence="12 13 14" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="7 13" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="13 17" id="KW-0436">Ligase</keyword>
    <keyword evidence="13" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10 13 14" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mur_ligase_M" evidence="16">
        <location>
            <begin position="125"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="domain" description="Mur_ligase_C" evidence="15">
        <location>
            <begin position="330"/>
            <end position="374"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <begin position="127"/>
            <end position="133"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00015655"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00639"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU003664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF02875"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF08245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="SHG61566.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="465" mass="49055" checksum="78DFD2738B9D81C9" modified="2017-03-15" version="1">MIPVQGYTGKTVAVLGLGRSGRAAAAALEAGGARAVCWDDSSAAQQAAEDDGLELRDLRKEGAFDDVSALIVSPGIPHLYPKPNAVIAAAWDAGVPVDNDIGLFFRSYATNDWDDFDTTPKVIAVTGSNGKSTTSALIHHILVENGRPAQLAGNIGRGVLDLEPAHDGEVVVLELSSYQTDLARALTPDIAVFTNLSPDHLDRHAGLGGYFAAKRRLFAEGGPDRAVIGVDEDEGRYIANQLAEAGDDCVLRISVERKLGGDGWNVFAKKGFLAETRKGRQVASIDLRDIAGLPGAHNHQNACAAYAACRTLGIGPKGIEAAMRSYSGLPHRSQIVAERDGVTFVNDSKATNVDSAAKALQAFKKIRWICGGLQKDGGLDALLPHVGSVQKAYVIGREADDFARQLTGVETQVCGIMEAAVGAAVADAEAGEVVLLAPAAASFDQYDSFEKRGDDFARLVQEALR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LCU4</accession>
    <name>A0A1M5LCU4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0221</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62796.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898620.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0221"/>
    <dbReference type="EnsemblBacteria" id="SHG62796">
        <property type="protein sequence ID" value="SHG62796"/>
        <property type="gene ID" value="SAMN05444003_0221"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="19"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="51"/>
            <end position="58"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG62796.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="249" mass="27736" checksum="6B556FE1DAEB1CBC" modified="2017-03-15" version="1">MNAPFNKNQNNATTHPAYLSVWEIEAYYGESYIVQNISFNIHEGEILALLGRNGAGKTSTLRTIARMEDPQLKHGEIWLDHQPLHNMRSHEAAKAGIALVPEDRRIIPGLTVEENIQLAQITPPIGWSLDRIYDLFPRLGERRRQEGVTLSGGEQQMLSIARALARDIKVLLLDEPYEGLAPVIVQEIAKTLNIIRDQGITTVIVEQNAVAALKLADRAVILDTGTVVYDGSAKEVLEDEQLRAKYLAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LEQ3</accession>
    <name>A0A1M5LEQ3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Hydroxypyruvate reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0255</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63602.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898680.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0255"/>
    <dbReference type="EnsemblBacteria" id="SHG63602">
        <property type="protein sequence ID" value="SHG63602"/>
        <property type="gene ID" value="SAMN05444003_0255"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008887">
        <property type="term" value="F:glycerate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1480.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037035">
        <property type="entry name" value="GK-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038614">
        <property type="entry name" value="GK_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007835">
        <property type="entry name" value="MOFRL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025286">
        <property type="entry name" value="MOFRL_assoc_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039760">
        <property type="entry name" value="MOFRL_protein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12227">
        <property type="entry name" value="PTHR12227"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13660">
        <property type="entry name" value="DUF4147"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05161">
        <property type="entry name" value="MOFRL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4147" evidence="2">
        <location>
            <begin position="7"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="domain" description="MOFRL" evidence="1">
        <location>
            <begin position="286"/>
            <end position="391"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13660"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG63602.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="398" mass="40913" checksum="9D44F5AAFA7657BB" modified="2017-03-15" version="1">MTDPRAQARAIFQAGVAAADPYERVRASLNNVAEQPAHIIAVGKAAVRMEEAAREAYPDTPALVVTNYENAQALKGATVMPAGHPIPDENGLRAAEAVIDTLSSATGPILALISGGGSALLPAPADGISLEEKAAVNAALLASGIEITEMNLVRQQLSRLKGGGLLRHAAPNAVTALILSDVIGDELSAIASGPTVAPLGTKAEAKGILEHYGIWDEMPQSVKAHLLAGEKESVLPAHTNHLIGSNGQSVEAMRVAGDAVAIDTPIEGDVADAARRICDACGTGTTVWGGETTVILKGDGRGGRNQELALRIAREAEARGWTDWTCLQGGSDGRDGPTDAAGGLVDSGTLQRISDKGGDLDALLGNNNSYQALALADDLLMTDATGTNVADLGVMIRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LET9</accession>
    <name>A0A1M5LET9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0257</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63642.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898682.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0257"/>
    <dbReference type="EnsemblBacteria" id="SHG63642">
        <property type="protein sequence ID" value="SHG63642"/>
        <property type="gene ID" value="SAMN05444003_0257"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006597">
        <property type="entry name" value="Sel1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08238">
        <property type="entry name" value="Sel1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00671">
        <property type="entry name" value="SEL1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG63642.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="152" mass="17099" checksum="F7A30B9C15D3E12A" modified="2017-03-15" version="1">MAFLLFWAVPAQATMEEAKDLMEAGEFEAAKELFEVYARSGNADAEELIGVMYALGLGVEKDDVRAFDWYLRASLKGHAGAQSGIGWYYEVGRGMPEPDLVRAYLWYALSAIGGDVDAPDSLEELTPKLTPEQRAQAEKMIDDYRVWMYPFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LF08</accession>
    <name>A0A1M5LF08_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 11">Error-prone DNA polymerase</fullName>
            <ecNumber evidence="2 11">2.7.7.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">dnaE2</name>
        <name evidence="14" type="ORF">SAMN05444003_0252</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10 11">
            <text>a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)</text>
            <dbReference type="Rhea" id="RHEA:22508"/>
            <dbReference type="Rhea" id="RHEA-COMP:17339"/>
            <dbReference type="Rhea" id="RHEA-COMP:17340"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:173112"/>
            <dbReference type="EC" id="2.7.7.7"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 11">Belongs to the DNA polymerase type-C family. DnaE2 subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.7" evidence="2 11"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63530.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0252"/>
    <dbReference type="EnsemblBacteria" id="SHG63530">
        <property type="protein sequence ID" value="SHG63530"/>
        <property type="gene ID" value="SAMN05444003_0252"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008408">
        <property type="term" value="F:3'-5' exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01902">
        <property type="entry name" value="DNApol_error_prone"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011708">
        <property type="entry name" value="DNA_pol3_alpha_NTPase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040982">
        <property type="entry name" value="DNA_pol3_finger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023073">
        <property type="entry name" value="DNA_pol_error_prone"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029460">
        <property type="entry name" value="DNAPol_HHH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003141">
        <property type="entry name" value="Pol/His_phosphatase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004805">
        <property type="entry name" value="PolC_alpha"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32294">
        <property type="entry name" value="PTHR32294"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32294:SF4">
        <property type="entry name" value="PTHR32294:SF4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07733">
        <property type="entry name" value="DNA_pol3_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17657">
        <property type="entry name" value="DNA_pol3_finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14579">
        <property type="entry name" value="HHH_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00481">
        <property type="entry name" value="POLIIIAc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00594">
        <property type="entry name" value="polc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 11" id="KW-0227">DNA damage</keyword>
    <keyword evidence="9 11" id="KW-0234">DNA repair</keyword>
    <keyword evidence="6 11" id="KW-0235">DNA replication</keyword>
    <keyword evidence="8 11" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="5 11" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="POLIIIAc" evidence="13">
        <location>
            <begin position="35"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="1085"/>
            <end position="1110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00017273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00024632"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="SMART" id="SM00481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="SHG63530.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="1110" mass="124514" checksum="F5D9FB655286B4C0" modified="2017-03-15" version="1">MLKREGAMPQNDHAHPRRTLPEDGDFEPNSKAVFVELGLTTCFSFLRGASDAVDLAKTAWALGYDTIGCADLNTFAGVVRIHTEAKKTKMRPVIGCRIALVTGEVFLAYPETRDAYGRLSTLLSKGKTRDLEGEWQAKGVCDLTLQDLAGACKNVQLIVIPDVDVDAFAARLPRLLKALPALRYIAASYLYRVNDRARINALDALADRYRLSLLATNDVLYHAPDRRPLQDVMTCIREKTTIQKAGYLLEPNAERHLKSPAQMIELFAEWPHAIQATRRVADACTFDLEELAYEYPREVIPQDMTPQAYLEQLTWHHAEQRYPDGVSEETRAILNKELAMIKKLDIAQYFLTIHDIIRFARQGATPEILCQGRGSAANSAVCYVLGITAVDPTQHSLLFERFISEERKEPPDIDVDFEHERREEVIQHIYQKYGRDRAGLCATVIHYRPRSAIREVGKVMGLSEDVTGALAKTVWGSWGKTVDDSNVGEAGLDLSDPILRKTLIIAQQLIGMPRHLGQHVGGFILTERPLIETVPIGNGAMPDRTFIEWDKDDIDALGILKVDILALGMLTCIRKCFDLIKAHYGQSWTLATVPQEDPRVYDMLCKGDSIGVFQVESRAQINMLPRLRPRTFYDLVIEVAIVRPGPIQGDMVHPYLRRRSGEEAVEYPSPGAPHDPAELKKILGRTLGVPIFQEQAMKIAIDAAKFSSKEANDLRKAMATFRSRGTIETLQDKMVGRMTKRGYDPDFAQRCFDQIKGFGDYGFPESHAASFAQLVYVSSWLKCHFPAVFTTALLNSQPMGFYAPAQLVRDAREHGIEVRAADVNYSEWDNTLEPVTGEVGTFAIRLGMRQISGLREDAAARIIAAREAPYHDLEDLKVRAGITAPIVRRLAEADAMRSMFIDRRQALWEAKALKDAPDLPLFQDTRDEGAEVPVPLPAMPVCEQVVADYQTMRLSLKAHPMSFLRKSMDKQGFISTKQLLPSRNWQKVKMAGLVLIRQRPGSAKGVCFITIEDELGVANVVVWPKVMEHYRKVVMQSRLLMVEGYVQRDVEIIHVIAKHLEDRSDALLKLSPDGLQPAMAHADEVNRPLPAPSSRHPRNVSVIPKSRDFH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LK02</accession>
    <name>A0A1M5LK02_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0337</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65358.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898782.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0337"/>
    <dbReference type="EnsemblBacteria" id="SHG65358">
        <property type="protein sequence ID" value="SHG65358"/>
        <property type="gene ID" value="SAMN05444003_0337"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.225.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001303">
        <property type="entry name" value="Aldolase_II/adducin_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036409">
        <property type="entry name" value="Aldolase_II/adducin_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013454">
        <property type="entry name" value="Bifunc_RhaD/ADH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00596">
        <property type="entry name" value="Aldolase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SMART" id="SM01007">
        <property type="entry name" value="Aldolase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53639">
        <property type="entry name" value="SSF53639"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02632">
        <property type="entry name" value="RhaD_aldol-ADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldolase_II" evidence="1">
        <location>
            <begin position="27"/>
            <end position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG65358.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="700" mass="76048" checksum="F8A18CC7AAFF9B85" modified="2017-03-15" version="1">MLKTVEKQPLENLWNDSVADEMSESEKLLYRSNLLGSDKRITNYGGGNTSAKVVERDPLSGKDVEVLWVKGSGGDIGSIKIDGFATLYMEKLEALKGLYRGVEFEDEMVGYLPHCTFELNPRAASIDTPLHAYVPQKHVDHLHPDAIIAIAASKNSKDLTQEIFNGEIGWLPWKKPGFELGLWLEDFCKKNPDAKGVVLESHGLFTWADDAKACYELSLEIIQKATDWFEAKTADVAAFGGAVHKSHAPGQRRAIAARLMPAIRGLVSGKQHMVGHFDDSDGVLEFVNAKDMRPLAALGTSCPDHFLRTKIRPLVVDFVPAENNIDAVLEGLPTQVAAYREDYAAYYERCKHDNSPAIRDPNAVVYLIPGVGMITFAKDKATARISGEFYINAINVMRGASSVSEYVGLPEQEAFDIEYWLLEEAKLQRMPKPKSLAGRIALVTGGAGGIGAATAERYLSEGACVVLADIDAEALASVEEKLKSLHSIDVVRSVNLDVTDETAVIAAFAETAVEFGGIDILVSNAGIASSAPVEETSLALWNKNMDILSTGYFLVSREAFKVLRTQSIGGAIVFIASKNGLAASPNASAYCTAKASELHLARCLALEGAEAGIRVNVVNPDAVLRGSRIWEGDWLDQRASTHGTDKDGLEEMYRQRSMLKRSVLPEDIAEAAYFFASDKSAKSTGNIVNVDAGNVQAFTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LL63</accession>
    <name>A0A1M5LL63_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0357</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65778.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG65778">
        <property type="protein sequence ID" value="SHG65778"/>
        <property type="gene ID" value="SAMN05444003_0357"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011250">
        <property type="entry name" value="OMP/PagP_b-brl"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56925">
        <property type="entry name" value="SSF56925"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012319074" evidence="1">
        <location>
            <begin position="18"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG65778.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="211" mass="21513" checksum="E99C43B96A2A73DC" modified="2017-03-15" version="1">MKYQVIFLGIASLALTACGGGSSGGGGGEFVVSNAIIDGIELPTGGDLAVYPQEVQDLITEFQDRNENTPQASNIPTMGTANYRGTFGISVEDGDVIVAAIYGDLALAADWDNPNGDLVTGKVTNLSVVDGGGTYNPTGSLAIDAPISGPSLELGTVKGTFSLPNGDFNLNGSFDGAFAGDGASSMLGQTEGTMTYPDNTTDSFSGLWYAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LNI8</accession>
    <name>A0A1M5LNI8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Enolase</fullName>
            <ecNumber evidence="8">4.2.1.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">2-phospho-D-glycerate hydro-lyase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">2-phosphoglycerate dehydratase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">eno</name>
        <name evidence="13" type="ORF">SAMN05444003_0394</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>(2R)-2-phosphoglycerate = H2O + phosphoenolpyruvate</text>
            <dbReference type="Rhea" id="RHEA:10164"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:58289"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="EC" id="4.2.1.11"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="activity regulation">
        <text evidence="8">The covalent binding to the substrate causes inactivation of the enzyme, and possibly serves as a signal for the export of the protein.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 4/5.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="8">Secreted</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="8">Cell surface</location>
        </subcellularLocation>
        <text evidence="8">Fractions of enolase are present in both the cytoplasm and on the cell surface. The export of enolase possibly depends on the covalent binding to the substrate; once secreted, it remains attached to the cell surface.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the enolase family.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.11" evidence="8"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898868.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0394"/>
    <dbReference type="EnsemblBacteria" id="SHG66611">
        <property type="protein sequence ID" value="SHG66611"/>
        <property type="gene ID" value="SAMN05444003_0394"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00187"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009986">
        <property type="term" value="C:cell surface"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000015">
        <property type="term" value="C:phosphopyruvate hydratase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004634">
        <property type="term" value="F:phosphopyruvate hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03313">
        <property type="entry name" value="enolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00318">
        <property type="entry name" value="Enolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000941">
        <property type="entry name" value="Enolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036849">
        <property type="entry name" value="Enolase-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029017">
        <property type="entry name" value="Enolase-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020810">
        <property type="entry name" value="Enolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020809">
        <property type="entry name" value="Enolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020811">
        <property type="entry name" value="Enolase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11902">
        <property type="entry name" value="PTHR11902"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00113">
        <property type="entry name" value="Enolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03952">
        <property type="entry name" value="Enolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001400">
        <property type="entry name" value="Enolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00148">
        <property type="entry name" value="ENOLASE"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00002">
        <property type="entry name" value="enolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01192">
        <property type="entry name" value="Enolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01193">
        <property type="entry name" value="Enolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51604">
        <property type="entry name" value="SSF51604"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54826">
        <property type="entry name" value="SSF54826"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01060">
        <property type="entry name" value="eno"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00164">
        <property type="entry name" value="ENOLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 8" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="7 8" id="KW-0456">Lyase</keyword>
    <keyword evidence="5 8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0964">Secreted</keyword>
    <feature type="domain" description="Enolase_N" evidence="12">
        <location>
            <begin position="4"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="domain" description="Enolase_C" evidence="11">
        <location>
            <begin position="139"/>
            <end position="425"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="8 10">
        <location>
            <begin position="364"/>
            <end position="367"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="8 9">
        <location>
            <position position="205"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="8 9">
        <location>
            <position position="337"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="155"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="164"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="242"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="285"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="312"/>
        </location>
    </feature>
    <feature type="binding site" description="covalent; in inhibited form" evidence="8">
        <location>
            <position position="337"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="388"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009604"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00318"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR001400-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR001400-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM01192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM01193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHG66611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="425" mass="45510" checksum="D13D9EC3E4116774" modified="2017-03-15" version="1">MSTIIDIHAREILDSRGNPTVEVDVMLEDGTMGRAAVPSGASTGAHEAVEKRDGNKARYKGKGVLEAVAAVNGEIAEALVGFDATEQVAIDQAMIELDGTPNKGRLGANAILGVSLAVAKAAADFTAQPLFRYVGGTSARVLPVPMMNIINGGEHADNPIDIQEFMIMPVSAENIREAVRMGAEVFHTLKKELSDAGHNTGIGDEGGFAPNLESTRVALDFIKTAVEKAGYTLGEDIYLALDCASSEYYKDGKYEMVGEGKSLTSVENAQYLADLCADYPIISIEDGMDEDDWEGWKILTEMIGDKVQLVGDDLFVTNPNRLSDGIAQGVANSMLVKLNQIGSLTETLQAVDMAHRARYTNVMSHRSGETEDATIADLAVATNCGQIKTGSLSRSDRLAKYNQLIRIEEVLGETAEYAGRSILKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LPH3</accession>
    <name>A0A1M5LPH3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Predicted DNA-binding protein, MmcQ/YjbR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0408</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66948.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898896.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0408"/>
    <dbReference type="EnsemblBacteria" id="SHG66948">
        <property type="protein sequence ID" value="SHG66948"/>
        <property type="gene ID" value="SAMN05444003_0408"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007351">
        <property type="entry name" value="YjbR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038056">
        <property type="entry name" value="YjbR-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04237">
        <property type="entry name" value="YjbR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF142906">
        <property type="entry name" value="SSF142906"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG66948.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="109" mass="11971" checksum="9F2E380E6EA6E03E" modified="2017-03-15" version="1">MTRQLIDQICAKMAGAIASAPTTELDSWKVGGKMFACFGDRIDGVCVKTDSVETATMLIDAGAAVKAPYFHKSWVLVGFDAPEEELRHRLLVSYDIIVKALPKKLRETL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LQ21</accession>
    <name>A0A1M5LQ21_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Monoamine oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0398</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66709.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898876.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0398"/>
    <dbReference type="EnsemblBacteria" id="SHG66709">
        <property type="protein sequence ID" value="SHG66709"/>
        <property type="gene ID" value="SAMN05444003_0398"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002937">
        <property type="entry name" value="Amino_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01593">
        <property type="entry name" value="Amino_oxidase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012183571" evidence="1">
        <location>
            <begin position="23"/>
            <end position="381"/>
        </location>
    </feature>
    <feature type="domain" description="Amino_oxidase" evidence="2">
        <location>
            <begin position="36"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="domain" description="Amino_oxidase" evidence="2">
        <location>
            <begin position="155"/>
            <end position="380"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG66709.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="381" mass="41573" checksum="4E9409874A51EEC0" modified="2017-03-15" version="1">MKRRGFLLATGAALAAPAILTAQTVQRVIVIGGGSAGMTAAARLIDAGVDVVLLEASDVLGGRMARDTTLADFPIDLGAEWIHNDPEVLGDILGLGWTLTDVETIVYRPQTYQFYDGGRLRNRNLLRFTYAETKFLDTTWYGFFERFVMEKIAPSVRLNTGVDWIEHSADGVRVRTTTGDVLEADRVIVATPISALQSGRIKIASGFEDWKSEALSEVGFGQGLKVFLKFREQFYPDILVEGSVWEQTDDSWDSKLYYNAAFGKDTSDNVLGLFNVAQGALPWSQLSADHLVQSVLEELDAIYDGAPRALFESAVTKLWSQEPNIGGSYSMDNNSDYDIEEILAPINGRIFFAGEALGGDAQSTVQGAAYSGVDAVERILG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LSG9</accession>
    <name>A0A1M5LSG9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0452</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67961.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG67961">
        <property type="protein sequence ID" value="SHG67961"/>
        <property type="gene ID" value="SAMN05444003_0452"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG67961.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="52" mass="5677" checksum="A233350979DC22A2" modified="2017-03-15" version="1">MSVLKSVSQAVQKRVAYLRTKSELESMSIDVALDLDIYRGDAAKIASKAVYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LWK9</accession>
    <name>A0A1M5LWK9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Beta-N-acetylhexosaminidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0487</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyl hydrolase 3 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68753.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899011.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0487"/>
    <dbReference type="EnsemblBacteria" id="SHG68753">
        <property type="protein sequence ID" value="SHG68753"/>
        <property type="gene ID" value="SAMN05444003_0487"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019800">
        <property type="entry name" value="Glyco_hydro_3_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001764">
        <property type="entry name" value="Glyco_hydro_3_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036962">
        <property type="entry name" value="Glyco_hydro_3_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00933">
        <property type="entry name" value="Glyco_hydro_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00775">
        <property type="entry name" value="GLYCOSYL_HYDROL_F3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_hydro_3" evidence="4">
        <location>
            <begin position="30"/>
            <end position="285"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005336"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG68753.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="329" mass="36409" checksum="02A3C9DAFC47742B" modified="2017-03-15" version="1">MSSGAYIFAPKGLRLNRYEKWFFRDADPWGFILFARNIDDPEQVRALTSELRETVGWHAPILIDQEGGRVQRMRAPHWREYLPALDQMRQAREPMKAQLLRNRLIAEELRAVGIDVNCAPLADVLEENTHLVLANRLYGDDVDTVVQAARVCAEAFKMQGVLPVLKHIPGYGRAHVDSHTDLPRVDATRSVLTRRDFKTFEALKDIAMGMTAHIVYEAIDPQNPATTSPTVIRLIRKEIGFDGLLMTDDISMGALSGTIKDRAEAAMTAGCDIILHCNGVTKEMIQVAAGAGPMRVNGMVRADVALMARQDPSPIDISAAAAELESLLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LWS7</accession>
    <name>A0A1M5LWS7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Iron(III) transport system substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0519</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69461.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900376.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0519"/>
    <dbReference type="EnsemblBacteria" id="SHG69461">
        <property type="protein sequence ID" value="SHG69461"/>
        <property type="gene ID" value="SAMN05444003_0519"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026045">
        <property type="entry name" value="Ferric-bd"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002825">
        <property type="entry name" value="CfbpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5011979637" evidence="3">
        <location>
            <begin position="22"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="216"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="217"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR002825-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG69461.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="334" mass="36423" checksum="96B6B67FE539F480" modified="2017-03-15" version="1">MNLRSTLFATTLCAVAAPAVADVTIYTTRQPFLIEPVVNAFTEETGIGVNLQYVDNGLVERLKAEGARSPADLVMTVDIANLQRVVDEGVLQPVDSEIMLSSVPETLRSPENLWFALTTRARIVYASKSRVAEGEVTTYEDLASDKWRGRICTRSGLHNYNLALLSAVIDHVGVDAARDWAEGVRANLARSPEGNDRAQVKAIWAGECDISLGNTYYMGKMLETDGQQAWADDVRIEFPVFEGGGTHVNVSGIALTQSAPNKEEALQLMEYLVSPAAQSLYAEGNYEYPVLEGTPLSELVASWGDIQPDNVNLTTIAGHRPTALRIMEEVDFDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LZM9</accession>
    <name>A0A1M5LZM9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">UPF0056 membrane protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_0538</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the UPF0056 (MarC) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69873.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899076.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0538"/>
    <dbReference type="EnsemblBacteria" id="SHG69873">
        <property type="protein sequence ID" value="SHG69873"/>
        <property type="gene ID" value="SAMN05444003_0538"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002771">
        <property type="entry name" value="Multi_antbiot-R_MarC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33508">
        <property type="entry name" value="PTHR33508"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01914">
        <property type="entry name" value="MarC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00427">
        <property type="entry name" value="TIGR00427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="6"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="42"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="67"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="113"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="147"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="180"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009784"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU362048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG69873.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="208" mass="22031" checksum="CC2D4DE803682CF2" modified="2017-03-15" version="1">MNTLPEFIAAFTALFVVIDPIGLTPLFIAMTPNLDAKDRRAIALRACAVSIGILVVFALLGEQLLSFIGISMPAFQIAGGVLLFLTALDMLFERRQARRQDTTDETATIENDPSVFPLAIPLIAGPGAIATMILLTGEAEGATDYGAAIGVMLAVILLVFILFNVATWLERLLGKTGINVVTRLLGMLLAALSVQFILDGLKGFGLAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M0I5</accession>
    <name>A0A1M5M0I5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Ribosome-recycling factor</fullName>
            <shortName evidence="3">RRF</shortName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Ribosome-releasing factor</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">frr</name>
        <name evidence="5" type="ORF">SAMN05444003_0581</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the RRF family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70791.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899132.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0581"/>
    <dbReference type="EnsemblBacteria" id="SHG70791">
        <property type="protein sequence ID" value="SHG70791"/>
        <property type="gene ID" value="SAMN05444003_0581"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006415">
        <property type="term" value="P:translational termination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00520">
        <property type="entry name" value="RRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.132.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00040">
        <property type="entry name" value="RRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002661">
        <property type="entry name" value="Ribosome_recyc_fac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023584">
        <property type="entry name" value="Ribosome_recyc_fac_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036191">
        <property type="entry name" value="RRF_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20982">
        <property type="entry name" value="PTHR20982"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01765">
        <property type="entry name" value="RRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55194">
        <property type="entry name" value="SSF55194"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00496">
        <property type="entry name" value="frr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 3" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RRF" evidence="4">
        <location>
            <begin position="23"/>
            <end position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005912"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01765"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG70791.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="187" mass="20860" checksum="0B2D7EF55BD02135" modified="2017-03-15" version="1">MSDDFELDTDDLTRRMEGAISNLRTELASLRTGRASGSMLEPIMVDAYGSMTPINQVGTVNVPEPRMVTVNVWDKGLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELGKVAAQYAESARVSIRNLRKDGMDQIKKAKADGLSEDDQKFWEGAVQDMTDEHIKVVDQTLDTKQEEIMQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M1U0</accession>
    <name>A0A1M5M1U0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Lipoyl synthase</fullName>
            <ecNumber evidence="6">2.8.1.8</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Lip-syn</fullName>
            <shortName evidence="6">LS</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Lipoate synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Lipoic acid synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Sulfur insertion protein LipA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">lipA</name>
        <name evidence="9" type="ORF">SAMN05444003_0601</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>[[Fe-S] cluster scaffold protein carrying a second [4Fe-4S](2+) cluster] + 4 H(+) + N(6)-octanoyl-L-lysyl-[protein] + 2 oxidized [2Fe-2S]-[ferredoxin] + 2 S-adenosyl-L-methionine = (R)-N(6)-dihydrolipoyl-L-lysyl-[protein] + 2 5'-deoxyadenosine + [[Fe-S] cluster scaffold protein] + 4 Fe(3+) + 2 hydrogen sulfide + 2 L-methionine + 2 reduced [2Fe-2S]-[ferredoxin]</text>
            <dbReference type="Rhea" id="RHEA:16585"/>
            <dbReference type="Rhea" id="RHEA-COMP:9928"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="Rhea" id="RHEA-COMP:10475"/>
            <dbReference type="Rhea" id="RHEA-COMP:14568"/>
            <dbReference type="Rhea" id="RHEA-COMP:14569"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:29034"/>
            <dbReference type="ChEBI" id="CHEBI:29919"/>
            <dbReference type="ChEBI" id="CHEBI:33722"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:78809"/>
            <dbReference type="ChEBI" id="CHEBI:83100"/>
            <dbReference type="EC" id="2.8.1.8"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="6">Binds 2 [4Fe-4S] clusters per subunit. One cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.</text>
    </comment>
    <comment type="pathway">
        <text evidence="6">Protein modification; protein lipoylation via endogenous pathway; protein N(6)-(lipoyl)lysine from octanoyl-[acyl-carrier-protein]: step 2/2.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the radical SAM superfamily. Lipoyl synthase family.</text>
    </comment>
    <dbReference type="EC" id="2.8.1.8" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG71277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899155.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0601"/>
    <dbReference type="EnsemblBacteria" id="SHG71277">
        <property type="protein sequence ID" value="SHG71277"/>
        <property type="gene ID" value="SAMN05444003_0601"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00538">
        <property type="reaction ID" value="UER00593"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016992">
        <property type="term" value="F:lipoate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102552">
        <property type="term" value="F:lipoyl synthase activity (acting on glycine-cleavage complex H protein"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102553">
        <property type="term" value="F:lipoyl synthase activity (acting on pyruvate dehydrogenase E2 protein)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009249">
        <property type="term" value="P:protein lipoylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00206">
        <property type="entry name" value="Lipoyl_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031691">
        <property type="entry name" value="LIAS_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003698">
        <property type="entry name" value="Lipoyl_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10949">
        <property type="entry name" value="PTHR10949"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16881">
        <property type="entry name" value="LIAS_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005963">
        <property type="entry name" value="Lipoyl_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00271">
        <property type="entry name" value="lipoyl_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00510">
        <property type="entry name" value="lipA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 6" id="KW-0408">Iron</keyword>
    <keyword evidence="5 6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Radical SAM core" evidence="8">
        <location>
            <begin position="67"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="55"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="60"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="66"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="81"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="85"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="88"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="296"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG71277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="316" mass="35196" checksum="B9AE2D800B6B8C84" modified="2017-03-15" version="1">MRDLKIPAQRHPEKAKRPDNPQPKKPEWIRVKAPTSEGYKETRNIMREHKLVTVCEEAGCPNVGECWSQGHATMMIMGEVCTRACTFCNIATGKPPEALDVFEPGRVADAVKKLGLNHVVITSVDRDDVEDGGAEHFAQTIRAVRRQSPKTTIEILTPDFIRCDDSALEVVVAAKPDVFNHNLETVPGLYPEVRPGARYFHSLRLLQRVKELDPTMFTKSGIMVGLGEDKQAVIQVMEDMRAADIDFLTIGQYLQPTPKHHAVDRFVTPEEFATYEKAAFGKGFLMVSATPLTRSSYHAGDDFARLKAARLAKLGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M3X9</accession>
    <name>A0A1M5M3X9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nicotinamide-nucleotide amidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0606</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG71413.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899160.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0606"/>
    <dbReference type="EnsemblBacteria" id="SHG71413">
        <property type="protein sequence ID" value="SHG71413"/>
        <property type="gene ID" value="SAMN05444003_0606"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.950.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036653">
        <property type="entry name" value="CinA-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008136">
        <property type="entry name" value="CinA_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02464">
        <property type="entry name" value="CinA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF142433">
        <property type="entry name" value="SSF142433"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00199">
        <property type="entry name" value="PncC_domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CinA" evidence="1">
        <location>
            <begin position="2"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG71413.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="158" mass="15974" checksum="74617898D9B0C151" modified="2017-03-15" version="1">MTLAEDLLEIAKSKGIVVATAESCTGGLVAGAITDVPGSSAILDRGFVTYTNDAKKELLDVLDPTIDEHGAVSEQVASEMAQGALQASKANIAVSVTGIAGPGGSEFKPEGRVCFGVATPDAVDTETVEFGAIGRAEVREASVDKALTLLIKAARAAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M5N3</accession>
    <name>A0A1M5M5N3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">Elongation factor Ts</fullName>
            <shortName evidence="5">EF-Ts</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">tsf</name>
        <name evidence="7" type="ORF">SAMN05444003_0651</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF-Tu.GTP complex up to the GTP hydrolysis stage on the ribosome.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the EF-Ts family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72566.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899231.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0651"/>
    <dbReference type="EnsemblBacteria" id="SHG72566">
        <property type="protein sequence ID" value="SHG72566"/>
        <property type="gene ID" value="SAMN05444003_0651"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.479.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00050">
        <property type="entry name" value="EF_Ts"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036402">
        <property type="entry name" value="EF-Ts_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001816">
        <property type="entry name" value="Transl_elong_EFTs/EF1B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014039">
        <property type="entry name" value="Transl_elong_EFTs/EF1B_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018101">
        <property type="entry name" value="Transl_elong_Ts_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009060">
        <property type="entry name" value="UBA-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11741">
        <property type="entry name" value="PTHR11741"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00889">
        <property type="entry name" value="EF_TS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46934">
        <property type="entry name" value="SSF46934"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54713">
        <property type="entry name" value="SSF54713"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00116">
        <property type="entry name" value="tsf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01126">
        <property type="entry name" value="EF_TS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 5 7" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="4 5" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="EF_TS" evidence="6">
        <location>
            <begin position="71"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="region of interest" description="Involved in Mg(2+) ion dislocation from EF-Tu" evidence="5">
        <location>
            <begin position="79"/>
            <end position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00016956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG72566.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="290" mass="30416" checksum="00D92D9D8E379424" modified="2017-03-15" version="1">MAITAALVKELRESTGAGMMDAKKALTETDGDMEAAVDWLRTKGLAKAAKKSGRTAAEGLVAVAVEGGKGIAVEVNSETDFVGKNADFQKMVAGIAQVALGVNDVDALKAADMDGKTVEQTVTDAVAVIGENMSVRRMAALEGDAVVNYVHNAAATGMGKIGVLVATKGENEAFARQVAMHIAATNPASLSEDDLDPAVVEKEKQVQMDIARESGKPEQVIEKMIVGRMKKYMSEVTLVNQAFVVNPDLTVGAAASEAGVEITGFVRLEVGEGIEKKEENFAEEVAKMNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M644</accession>
    <name>A0A1M5M644_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Sugar or nucleoside kinase, ribokinase family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0656</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72678.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899241.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0656"/>
    <dbReference type="EnsemblBacteria" id="SHG72678">
        <property type="protein sequence ID" value="SHG72678"/>
        <property type="gene ID" value="SAMN05444003_0656"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016773">
        <property type="term" value="F:phosphotransferase activity, alcohol group as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002173">
        <property type="entry name" value="Carboh/pur_kinase_PfkB_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011611">
        <property type="entry name" value="PfkB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00294">
        <property type="entry name" value="PfkB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="SSF53613"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00583">
        <property type="entry name" value="PFKB_KINASES_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 4" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PfkB" evidence="3">
        <location>
            <begin position="6"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG72678.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="293" mass="30830" checksum="E05F6BDDA2596DE7" modified="2017-03-15" version="1">MTKTPDIICIGSFLWDVIGRANNHMRIGSDVPGRITRLPGGVALNIAMTLKQFGMTPTALSAIGQDAEGNELISEIQRMGIQCDHVYRSDDLPTDVYMAIEGANGLIAAIADAHSLEAAGDKILRSFRDGSLPIDNRPIALDGNLTVELLQSIAEDPFFKDADIRIAPASPGKAMRLSTFIGHSSTTFYVNLEEAGLLCNTEFTESETAALALVERGAHRVLVTDGGSSVSDANGSSVITQTPPSVLVTRVTGAGDTFMAAHIASEVGGANREDALTRALKAAATYVSGETPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M6K4</accession>
    <name>A0A1M5M6K4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0666</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72924.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899261.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0666"/>
    <dbReference type="EnsemblBacteria" id="SHG72924">
        <property type="protein sequence ID" value="SHG72924"/>
        <property type="gene ID" value="SAMN05444003_0666"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="16"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="397"/>
            <end position="470"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG72924.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="487" mass="53489" checksum="A50417BDE3E627D0" modified="2017-03-15" version="1">MTIPTPFNMAEYVLRHATRLSSKTALEVVGSANLSLTYADLENRVQCLAAQIEAQTFGSGDRVMLRLGNTERFPIAYLAAIAVDRVPIVTSSKLTQTEIDAMALETKPNLTIADKGLPTPKNVPLIDDMAAVDFNGYHHGDPNRPAYIIYTSGTSGSPRAVVHAHRAIWARRMMIKDWYDLSAEDCMMHAGAFNWTYTLGTGLMDPWSVGATALIPEEGTAAEALPTLIAEHKATLFAASPGVYRRMLRQEFPKVPTLRHALSAGEKLPDITRAHWETKTGTAIHEAYGMSECSTFLSGSPARPAPTGTLGFPQTGRKIDLISNGEPSETGVISIHKSDPGLMLGYLNQPQETRQRFNGDWFLTGDIGTRNPDGSITFEGRADDMMNAGGHRVSPIEVEQALSTCAKISEAACAEVRLKSDLSLIAAFYVASDVIEEDEIQNHLRDLIADYKRPRIFVRVDQLPRGNNNKLLRQKLKQDWEADHGQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M9F4</accession>
    <name>A0A1M5M9F4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5 7">30S ribosomal protein S9</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpsI</name>
        <name evidence="8" type="ORF">SAMN05444003_0712</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the universal ribosomal protein uS9 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899343.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0712"/>
    <dbReference type="EnsemblBacteria" id="SHG73917">
        <property type="protein sequence ID" value="SHG73917"/>
        <property type="gene ID" value="SAMN05444003_0712"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00532_B">
        <property type="entry name" value="Ribosomal_S9_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000754">
        <property type="entry name" value="Ribosomal_S9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023035">
        <property type="entry name" value="Ribosomal_S9_bac/plastid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020574">
        <property type="entry name" value="Ribosomal_S9_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21569">
        <property type="entry name" value="PTHR21569"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00380">
        <property type="entry name" value="Ribosomal_S9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00360">
        <property type="entry name" value="RIBOSOMAL_S9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 6" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00016789"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003816"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG73917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="165" mass="17929" checksum="1C7E6083F6E5504D" modified="2017-03-15" version="1">MADQVNSLEELGQVAEGVEAPEAVVETVINREPVRDGLGRSYATGKRKDAIARVWIKPGSGKVTVNGKDMPVYFARPVLQMILRQPFQVAGVVDQFDVMATVKGGGLSGQAGAVKHGISKALQLYDPSLRPSLKAAGFLTRDSRVVERKKYGKAKARKSFQFSKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MA34</accession>
    <name>A0A1M5MA34_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">NADPH:quinone reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0721</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74121.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0721"/>
    <dbReference type="EnsemblBacteria" id="SHG74121">
        <property type="protein sequence ID" value="SHG74121"/>
        <property type="gene ID" value="SAMN05444003_0721"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PKS_ER" evidence="2">
        <location>
            <begin position="22"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="68"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG74121.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="370" mass="39654" checksum="D9CC3728AD2CB977" modified="2017-03-15" version="1">MDRFDTSGHDKTMMAVVTTGNGGFDKLEYRAVPIPQPKAGEVLLRVLAAGVNNTEINTRLGWYSSSVTESTDATSDEQSEKSEQKADGGWNEATPFPFIQGTDCCGRVAAVGEGVDASRIGERVIVRACMRPNGYDTMDNIWMASDFDGAFAEYVVVPASEAFAVDVDWSDAELAAIPCAYGTSENMLHRANVKAGEHVLVAGASGGVGSATVQLALRRGAKVTAISGASKHNQLRSLGAYHLLDRNEDVVAALGEQSVDVVVDNVGGTGFPNMLKVLKRGGRFVTSGAIAGPIVSLDMRDMYLKDIQLIGSTAWDEPVFPNLISYIERSEIRPFLAGKYPLSEIVQAQKGFLEKKHVGKLVLIPPQPET</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MBH0</accession>
    <name>A0A1M5MBH0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">UDP-glucose 4-epimerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0739</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the NAD(P)-dependent epimerase/dehydratase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74585.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899391.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0739"/>
    <dbReference type="EnsemblBacteria" id="SHG74585">
        <property type="protein sequence ID" value="SHG74585"/>
        <property type="gene ID" value="SAMN05444003_0739"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001509">
        <property type="entry name" value="Epimerase_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01370">
        <property type="entry name" value="Epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Epimerase" evidence="2">
        <location>
            <begin position="4"/>
            <end position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007637"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG74585.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="309" mass="33920" checksum="15FB3B36946C133F" modified="2017-03-15" version="1">MTRILMTGGAGMVGRAVSKKLFGENVIVTDLADTDPPLGPKFRRLDVTGTDPEVVIAEEKPEVVIHLASIVTPPPGMTRDQAFAVDVTGTRNVLDACVKHGVRRLVVTSSGAAYGYHEDNPIPLTEDAPCRGNPEFAYADHKRQVEEILARARDNHPELEQVILRVGTVLGEGTDNQITALFKKKRLLAVRGSESPFVFIWTNDLAEIVKRAATESPAGIFNVAGDGWLTVDDLAQALGKKVLRLPAWLLKSALAVASPLGLSQYGPEQVRFLQFRPVLSNERLKTEFGYTPNRTSAEVFDLWKREAWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MCD3</accession>
    <name>A0A1M5MCD3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein N-acetyltransferase, RimJ/RimL family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0731</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74383.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899380.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0731"/>
    <dbReference type="EnsemblBacteria" id="SHG74383">
        <property type="protein sequence ID" value="SHG74383"/>
        <property type="gene ID" value="SAMN05444003_0731"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13302">
        <property type="entry name" value="Acetyltransf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="19"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG74383.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="181" mass="20308" checksum="07800F9A5B3A3B84" modified="2017-03-15" version="1">MDVYAENRSVVSELHQDGLTLRPIVRGDADAIVSALSQWRVTRWLTSAPFPFGYENAIYFIDEIANAKGEPFWGIDWGSGLIGVISVKPDLGYWLHPDHHGKGTMSRAVAMACDHHFEGPYSELVSGHFLGNEPSRAVLLKAGFEDTHQEEAVQLSTEKTVVIQRMTLTRDRWQTLRSQAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MDU0</accession>
    <name>A0A1M5MDU0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF87 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0779</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75435.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0779"/>
    <dbReference type="EnsemblBacteria" id="SHG75435">
        <property type="protein sequence ID" value="SHG75435"/>
        <property type="gene ID" value="SAMN05444003_0779"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008571">
        <property type="entry name" value="HerA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002789">
        <property type="entry name" value="HerA_central"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42957">
        <property type="entry name" value="PTHR42957"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01935">
        <property type="entry name" value="DUF87"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF87" evidence="1">
        <location>
            <begin position="112"/>
            <end position="257"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG75435.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="484" mass="52939" checksum="CE97D4907FA2A94F" modified="2017-03-15" version="1">MTSAPIAYSTDGRTFHFSTDIKSGHEIGSYVRLETEAGSTFLGQVLDAEIKGIGTGSMSVSGIGEIRAITDGEAILDGKPTPFGSATLSDVDPKVVHAYFARLRGSKAGLDIGRMKRVGDNETATLQAAGFGRHTLVCGQSGSGKTYSLGVVLERLLMETDLRIAVLDPNSDYVNLNEFGGADQMGLDAAEQEKLSERYAEASRRVSIHGTRENQQPLQTRFGRLPIEQKALVLDLDPLRDAREYNVLGRIVREMPNTEYSLSDVRQKAASMFDDGAQNLAIRIDNLNVEDMSIWAPNDAPAMLDLIPEDWRGIVLDLGSLPSANERSLMAASAVHFFWQTRHRRRPTLLVIDEAHNVCPQTPTDRFQAMAIEDLAAIAGEGRKFGLYLLLVTQRPQKLHVNVLSQCENILLMRMNSKADIDHLASVFSHVPEPMIRQASSFGLGEGLAAGRISADPMLFKTGTRFSVEGGSDIPAAWAEQRKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MDV7</accession>
    <name>A0A1M5MDV7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0780</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75455.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG75455">
        <property type="protein sequence ID" value="SHG75455"/>
        <property type="gene ID" value="SAMN05444003_0780"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG75455.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="54" mass="6341" checksum="F7045D8A8652D7DC" modified="2017-03-15" version="1">MYLTKLFIAFSCANSKSFQFTHSPSQSREWPYVRNVYGVNPEREPENLSQEPTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MGD9</accession>
    <name>A0A1M5MGD9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">3-oxoacyl-[acyl-carrier-protein] synthase 3</fullName>
            <ecNumber evidence="8">2.3.1.180</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">3-oxoacyl-[acyl-carrier-protein] synthase III</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Beta-ketoacyl-ACP synthase III</fullName>
            <shortName evidence="8">KAS III</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">fabH</name>
        <name evidence="11" type="ORF">SAMN05444003_0812</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>acetyl-CoA + H(+) + malonyl-[ACP] = 3-oxobutanoyl-[ACP] + CO2 + CoA</text>
            <dbReference type="Rhea" id="RHEA:12080"/>
            <dbReference type="Rhea" id="RHEA-COMP:9623"/>
            <dbReference type="Rhea" id="RHEA-COMP:9625"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:78449"/>
            <dbReference type="ChEBI" id="CHEBI:78450"/>
            <dbReference type="EC" id="2.3.1.180"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="8">Lipid metabolism; fatty acid biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="8">The last Arg residue of the ACP-binding site is essential for the weak association between ACP/AcpP and FabH.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 8">Belongs to the thiolase-like superfamily. FabH family.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.180" evidence="8"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76212.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899491.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0812"/>
    <dbReference type="EnsemblBacteria" id="SHG76212">
        <property type="protein sequence ID" value="SHG76212"/>
        <property type="gene ID" value="SAMN05444003_0812"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00094"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004315">
        <property type="term" value="F:3-oxoacyl-[acyl-carrier-protein] synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033818">
        <property type="term" value="F:beta-ketoacyl-acyl-carrier-protein synthase III activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01815">
        <property type="entry name" value="FabH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013751">
        <property type="entry name" value="ACP_syn_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013747">
        <property type="entry name" value="ACP_syn_III_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004655">
        <property type="entry name" value="FabH_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08545">
        <property type="entry name" value="ACP_syn_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08541">
        <property type="entry name" value="ACP_syn_III_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00747">
        <property type="entry name" value="fabH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 8" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="4 8" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="2 8" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="5 8" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="8" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="ACP_syn_III" evidence="10">
        <location>
            <begin position="108"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="domain" description="ACP_syn_III_C" evidence="9">
        <location>
            <begin position="234"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="region of interest" description="ACP-binding" evidence="8">
        <location>
            <begin position="251"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="active site" evidence="8">
        <location>
            <position position="114"/>
        </location>
    </feature>
    <feature type="active site" evidence="8">
        <location>
            <position position="250"/>
        </location>
    </feature>
    <feature type="active site" evidence="8">
        <location>
            <position position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF08541"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF08545"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG76212.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="323" mass="34051" checksum="F5ED952A524CE53A" modified="2017-03-15" version="1">MTLRAVVKGVGHYLPERVVSNSEFEKTLDTTDEWIKSRSGIERRHFAAPGETTSNLGAAAARNALKHAGLDANDIDAIVVATSTADLTFPSCATMIQNELGNTKGFAFDVQAVCAGFAYALANANALIVSGQAERALVIGAETFSRIMDWTDRSTCVLFGDGAGALVLEAHDGNGTSDDRGILSTDLNSDGRYKDILYVDGGVSTQTTGVLKMQGKEVFRHAVEKLAQTAHTALDKVGLTADDVNWVVPHQANIRIIQSTAKKLGVGMDRVVVTVQDHGNTSAASIPLALSVGVETGQIKEGDVIVTEAIGGGLAWGSAVIRW</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MHK4</accession>
    <name>A0A1M5MHK4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized 5xTM membrane BCR, YitT family COG1284</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_0828</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76592.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899517.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0828"/>
    <dbReference type="EnsemblBacteria" id="SHG76592">
        <property type="protein sequence ID" value="SHG76592"/>
        <property type="gene ID" value="SAMN05444003_0828"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003740">
        <property type="entry name" value="YitT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02588">
        <property type="entry name" value="YitT_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="16"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="58"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="87"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="111"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="150"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="177"/>
            <end position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG76592.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="203" mass="22126" checksum="3E6BD901334EA9E5" modified="2017-03-15" version="1">MAEPHKSINHKWHEDLLAFLVGTSMCALGIQFLNFAGLITGQTAGLGVLLSYVTETSFGVWFFVLNLPFYIFGWLRLGPRFTIKSFAVVLMLSVLSELFSDLIVLDSVPTALAALLAGACSGLGLMIVFRHGASLGGIGVMALYLQDKTGWQAGWTQLAFDACLFLVAVFILPIDLVFWSLIGAVATNIIIGLNHRKDRYVAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MJ14</accession>
    <name>A0A1M5MJ14_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glucokinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0856</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial glucokinase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77298.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899555.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0856"/>
    <dbReference type="EnsemblBacteria" id="SHG77298">
        <property type="protein sequence ID" value="SHG77298"/>
        <property type="gene ID" value="SAMN05444003_0856"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004340">
        <property type="term" value="F:glucokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005536">
        <property type="term" value="F:glucose binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003836">
        <property type="entry name" value="Glucokinase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02685">
        <property type="entry name" value="Glucokinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU004046"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG77298.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="324" mass="34333" checksum="7478F6416DAFC082" modified="2017-03-15" version="1">MAHAPNTLNLVADIGGTNTRVALARGKMLLPETVTKYKNTAHSSLQDVLKKFIQEQGGVDTSAACIAIAGPVRNGQASMTNLDWEIDLETLADASKAENTAILNDLQAQGHALGHLPPESETQIIHGTSIEKETTRMMVGLGTGFNIAPVFETPNGRFIPPSESGHISLPINTEMDRKLSAHFDAQFGFPTIEHALSGNGLENLYNFHCCGVEGAAHKNAATIVADCEAGIDPAATRAVRHFVQILGSVCGDLALVQLPFSGIYLVGGVSRAIAPHLSEFGFLDAFRAKGRFEDFMNSFSVAAISDDFAALTGCAAYLESSAHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MJ81</accession>
    <name>A0A1M5MJ81_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alpha-glucosidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0850</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77152.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899550.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0850"/>
    <dbReference type="EnsemblBacteria" id="SHG77152">
        <property type="protein sequence ID" value="SHG77152"/>
        <property type="gene ID" value="SAMN05444003_0850"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.400.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006047">
        <property type="entry name" value="Glyco_hydro_13_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013780">
        <property type="entry name" value="Glyco_hydro_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045857">
        <property type="entry name" value="O16G_dom_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00128">
        <property type="entry name" value="Alpha-amylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00642">
        <property type="entry name" value="Aamy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aamy" evidence="1">
        <location>
            <begin position="25"/>
            <end position="412"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG77152.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="548" mass="61715" checksum="DDA09B72FFFC5D59" modified="2017-03-15" version="1">MNVATAAKLDNAVSKDWWRGAVIYQIYPRSYQDSNGDGVGDLLGIVQRLPYIATLGVDAIWISPFFMSPMKDFGYDVSDYCDVDPMFGTLADFDAVVETAHRFGIRVMIDLVLSHTSDQHPWFAESRANRDNAKHDWYVWSDPKPDGTPPNNWLSIFGGSGWQWDARREQYYLHNFLASQPDLNFHNPNVQDALLDVATFWLNRGVDGFRLDTINFYFHDAQLRDNPALPPEERNSTIAPSVNPYNHQKHLYSKNQPENLEFLRRLRAVMEPFGAAAVGEVGDAQFGLEIMGQYTAGDDLMQMCYAFEFLANAKPSAQEFVDVLLKVDDVAADGWACWAFSNHDVQRHASRWELTAAGQRMFATLIMCLRGSVCLYQGEELGLPEADVAFDDLQDPYGIEFWPEFKGRDGCRTPMVWEKSNQYSGFSEAKTWLPVAHEHLQLSVEAQEDDPSALLHHYRKSIHFRQTHDVLAVGEHSDLTASGDVLSFKRTLGGQTIFCAFNISDTPSDLDLPSGSWLPIGAELGSAQISQDGKLHLGPWQVCLALKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MJY9</accession>
    <name>A0A1M5MJY9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0847</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77073.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899547.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG77073">
        <property type="protein sequence ID" value="SHG77073"/>
        <property type="gene ID" value="SAMN05444003_0847"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="58"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="92"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG77073.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="144" mass="15740" checksum="324D1EE34BC61054" modified="2017-03-15" version="1">MTREQKVLRINAEIIMIFGVLFALAALPWVYSWISFFFDIAHWPFNSAPETLDPTGRLMIAISGGLTVGLGAMVWTVATEVLPVAPKEGRKVVLYAAIGWFVTDSTFSVVAGSPLNVLLNLSFLLMMVMPLQRKGPAEADPAQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MLL7</accession>
    <name>A0A1M5MLL7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Extracytoplasmic solute receptor protein</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">TRAP transporter</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_0872</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Part of the tripartite ATP-independent periplasmic (TRAP) transport system.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the bacterial solute-binding protein 7 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77653.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899576.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0872"/>
    <dbReference type="EnsemblBacteria" id="SHG77653">
        <property type="protein sequence ID" value="SHG77653"/>
        <property type="gene ID" value="SAMN05444003_0872"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031317">
        <property type="term" value="C:tripartite ATP-independent periplasmic transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071702">
        <property type="term" value="P:organic substance transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018389">
        <property type="entry name" value="DctP_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026289">
        <property type="entry name" value="SBP_TakP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038404">
        <property type="entry name" value="TRAP_DctP_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33376">
        <property type="entry name" value="PTHR33376"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03480">
        <property type="entry name" value="DctP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF039026">
        <property type="entry name" value="SiaP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 6" id="KW-0574">Periplasm</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0732">Signal</keyword>
    <keyword evidence="3 6" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="9">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013268531" description="Extracytoplasmic solute receptor protein" evidence="9">
        <location>
            <begin position="29"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7 8">
        <location>
            <position position="156"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="177"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="214"/>
        </location>
        <ligand>
            <name>a metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:25213"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="240"/>
        </location>
        <ligand>
            <name>a metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:25213"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR039026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR039026-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR039026-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG77653.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="360" mass="38405" checksum="ADDDAA93D40D12AF" modified="2017-03-15" version="1">MDRRSFLGKAALGGTAAAASALAAPAYAQGNRTLTLVTTWGRGLAGVHDAAQRAADTITAMSDGSLTIDLKAAGELVGAFEVFDAVTSGQADMYHGADYYFVGQHPGYAFFTSVPFGMTPGEIMNWYYNGNGRAYHDELGEIFGLKSFLAGNTGPQAGGWFAKEIAGPEDFQGLKFRMPGLGGQALGRMGASVQNLPGAEVYQALASGAIDGTEWIGPWADEKAGFQEITKFYYTAGMHEPGAALSLATNLDVFNELSPAHQKIIEIAAAEAHQWNLAQFMNNNGAALQRLQAGGVKVLEFPDSVWDAMGTAAAETMDQYAGDDLYDRLRADYNESMQASSGWIQRSEGAYRAQRDRVMG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MQP3</accession>
    <name>A0A1M5MQP3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 8">Heme exporter protein C</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Cytochrome c-type biogenesis protein</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">ccmC</name>
        <name evidence="10" type="ORF">SAMN05444003_0942</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 8">Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell inner membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the CcmC/CycZ/HelC family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79209.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0942"/>
    <dbReference type="EnsemblBacteria" id="SHG79209">
        <property type="protein sequence ID" value="SHG79209"/>
        <property type="gene ID" value="SAMN05444003_0942"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015232">
        <property type="term" value="F:heme transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017004">
        <property type="term" value="P:cytochrome complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002541">
        <property type="entry name" value="Cyt_c_assembly"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003557">
        <property type="entry name" value="Cyt_c_biogenesis_CcmC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045062">
        <property type="entry name" value="Cyt_c_biogenesis_CcsA/CcmC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30071">
        <property type="entry name" value="PTHR30071"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01578">
        <property type="entry name" value="Cytochrom_C_asm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01386">
        <property type="entry name" value="CCMCBIOGNSIS"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01191">
        <property type="entry name" value="ccmC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0201">Cytochrome c-type biogenesis</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="20"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="54"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="93"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="127"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="159"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="199"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrom_C_asm" evidence="9">
        <location>
            <begin position="13"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002442"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00016463"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU364092"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01578"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG79209.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="242" mass="27154" checksum="875F1B52DB9F9DEF" modified="2017-03-15" version="1">MSVWEYANPRRFMGWTAPVLLWVFGLAGVALVTGLIWGYFFTPDAARFGSTVKIIYIHVPAAFIAINAWIMMLIASLIWLVRRHHVSALAAKAAAPIGLVMTVIGLATGAIWGQPMWGTYWAWDPRLTSFLILFLFYIGYISLWAAIEDGDTAADLTSWLCLVGSVFALLSRYAVLFWNQGLHQGASLSLDAEENVADVFWFPLVLCIVGFVLLFIALVLLRTRTEIRLRRAQALERRMARN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MR16</accession>
    <name>A0A1M5MR16_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0975</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0975"/>
    <dbReference type="EnsemblBacteria" id="SHG79834">
        <property type="protein sequence ID" value="SHG79834"/>
        <property type="gene ID" value="SAMN05444003_0975"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010710">
        <property type="entry name" value="DUF1289"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35175">
        <property type="entry name" value="PTHR35175"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06945">
        <property type="entry name" value="DUF1289"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG79834.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="78" mass="8881" checksum="E484A4DCA89C02DA" modified="2017-03-15" version="1">MKDSDAIWQRDEIESPCVKICVIHPEARLCTGCLRSIEEIGAWSRMSGEERKAVMDDLPARKSKLVKRRGGRAARLNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MR82</accession>
    <name>A0A1M5MR82_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Cytokinin riboside 5'-monophosphate phosphoribohydrolase</fullName>
            <ecNumber evidence="2">3.2.2.n1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0961</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>AMP + H2O = adenine + D-ribose 5-phosphate</text>
            <dbReference type="Rhea" id="RHEA:20129"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16708"/>
            <dbReference type="ChEBI" id="CHEBI:78346"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="3.2.2.4"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the LOG family.</text>
    </comment>
    <dbReference type="EC" id="3.2.2.n1" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79562.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899707.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0961"/>
    <dbReference type="EnsemblBacteria" id="SHG79562">
        <property type="protein sequence ID" value="SHG79562"/>
        <property type="gene ID" value="SAMN05444003_0961"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008714">
        <property type="term" value="F:AMP nucleosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009691">
        <property type="term" value="P:cytokinin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005269">
        <property type="entry name" value="LOG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031100">
        <property type="entry name" value="LOG_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03641">
        <property type="entry name" value="Lysine_decarbox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00730">
        <property type="entry name" value="TIGR00730"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0203">Cytokinin biosynthesis</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU363015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG79562.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="186" mass="20120" checksum="22C74C45D3A04F69" modified="2017-03-15" version="1">MSAIPKSVCVYCGSRDGNNPAYAKAAEDTGVMLVKNGWRLVYGAGDVGLMGRVANSVQNAGGKTFGVIPTHLMDWEVGKQDLDSFVITETMHERKKVMIMNADAVVMIPGGAGSLDEFFEALTWRQLGLHSKPIFLVNTEGYWAPLLSLMNHVVSEGFAGADILSYVTVVPDVHALESSLQFALRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MRT1</accession>
    <name>A0A1M5MRT1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Peptide chain release factor 3</fullName>
            <shortName evidence="6">RF-3</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">prfC</name>
        <name evidence="8" type="ORF">SAMN05444003_0983</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80008.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899727.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0983"/>
    <dbReference type="EnsemblBacteria" id="SHG80008">
        <property type="protein sequence ID" value="SHG80008"/>
        <property type="gene ID" value="SAMN05444003_0983"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016149">
        <property type="term" value="F:translation release factor activity, codon specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006449">
        <property type="term" value="P:regulation of translational termination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04169">
        <property type="entry name" value="RF3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.3280">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00072">
        <property type="entry name" value="Rel_fac_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035647">
        <property type="entry name" value="EFG_III/V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004161">
        <property type="entry name" value="EFTu-like_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031157">
        <property type="entry name" value="G_TR_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004548">
        <property type="entry name" value="PrfC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032090">
        <property type="entry name" value="RF3_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038467">
        <property type="entry name" value="RF3_dom_3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041732">
        <property type="entry name" value="RF3_GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43556">
        <property type="entry name" value="PTHR43556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03144">
        <property type="entry name" value="GTP_EFTU_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16658">
        <property type="entry name" value="RF3_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00315">
        <property type="entry name" value="ELONGATNFCT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54980">
        <property type="entry name" value="SSF54980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00503">
        <property type="entry name" value="prfC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00301">
        <property type="entry name" value="G_TR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 6" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 6" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tr-type G" evidence="7">
        <location>
            <begin position="12"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="21"/>
            <end position="28"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="89"/>
            <end position="93"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="143"/>
            <end position="146"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009978"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG80008.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="531" mass="59058" checksum="8D1A491A0EF351E9" modified="2017-03-15" version="1">MTNRPDLPAEIARRRTFAIISHPDAGKTTLTEKFLLYGGAIQMAGQVRAKGEARRTRSDFMQMEKDRGISVSASAMSFDFENYRFNLVDTPGHSDFSEDTYRTLTAVDAAVMVIDGAKGVESQTQKLFEVCRLRDLPILTFCNKMDRESRDTFEIIDEIQENLAIDVTPASWPIGVGRDFIGTYDILRDRLELMDRADRNKVAESVEINGLDDPKLAEHVPADLLGKFLEEIEMAKELLPPLDPEALLNGSMTPIWFGSAINSFGVKELMDGIGTYGPEPQIQSAEPRKIAPEEKSVAGFVFKVQANMDPKHRDRVAFLRLASGHFKRGMKLTHVRTKKPMAVSNPVLFLASDRELAEEAWAGDIIGIPNHGQLRIGDTLTEGETVRVTGIPSFAPELLQTCRAGDPLKAKHLEKALMQFAEEGAAKVFKPTFGSGFIVGVVGALQFEVLASRIEMEYGLPVRFEASQFTSARWVHGGKDAVDKFAAANKQHIAEDNDGDVVYLTRLQWDIDRVERDYPDVTLSSTKEMMV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MUS4</accession>
    <name>A0A1M5MUS4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Capsular polysaccharide export protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1036</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81084.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1036"/>
    <dbReference type="EnsemblBacteria" id="SHG81084">
        <property type="protein sequence ID" value="SHG81084"/>
        <property type="gene ID" value="SAMN05444003_1036"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000271">
        <property type="term" value="P:polysaccharide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015774">
        <property type="term" value="P:polysaccharide transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12580">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007833">
        <property type="entry name" value="Capsule_polysaccharide_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043148">
        <property type="entry name" value="TagF_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05159">
        <property type="entry name" value="Capsule_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG81084.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="371" mass="41761" checksum="72478A62990C58E0" modified="2017-03-15" version="1">MGGQASYGIRWLKEPHDHKERFFHAIADAEGAGRSMRTWTVSFRGFSQTEDRAEECLKRAKKQPGWFGSRWLKRAFIKGRYNRSRRYFQKNQQQIAVCWQGLTGTRRAFMLGAIDAGADTLFAELAPLPGYKTLDPLGVNAEGSIPQDRFEYDAVVSQPDVLAAIAGQFQSRQSRRSDVGQAGALPQDTGPFLFVPLQVPDDSQMILFADWVQSAKGFVEELAKASAHLPDGWHLRLKEHPSSKIRLTRYIEKAINGGARMVLDNETDSFEQLRASQAVVTVNSSMGLQAMFFDKPVVTTGRAFYAIPGLTTHASSAKRLSDLFEQAEALSFDPDFRQRFLTWLATEYYVKEDENGYDMDQLRARVAEARA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MV42</accession>
    <name>A0A1M5MV42_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Peptide/nickel transport system ATP-binding protein/glutathione transport system ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1041</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81194.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899780.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1041"/>
    <dbReference type="EnsemblBacteria" id="SHG81194">
        <property type="protein sequence ID" value="SHG81194"/>
        <property type="gene ID" value="SAMN05444003_1041"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015833">
        <property type="term" value="P:peptide transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013563">
        <property type="entry name" value="Oligopep_ABC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08352">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="6">
        <location>
            <begin position="10"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="6">
        <location>
            <begin position="303"/>
            <end position="553"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="44"/>
            <end position="51"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="346"/>
            <end position="353"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG81194.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="611" mass="67135" checksum="21689785A43CA094" modified="2017-03-15" version="1">MLDEKPIADIQNLRVEFQTKGGTVVAVQDVSIDVKPGETVCIVGESGSGKSVTSLSLMRLVGYGGGEITNGVMTFEHADGTSEDLAKRTSEDMQEVRGNEIGMIFQEPMTSLNPVFTVGMQLTEGLRRHKGMSKNEAKERAIELLRQVRIPEPERRLEQYPHELSGGMRQRVVIAMALACEPRLLIADEPTTALDVTIQAEILALMNRLKKETGTAVMFITHDMAVVAQIADRVVVMYRGEKVEEGPVEEIFANPQHSYTQALLSAVPRLGEMSGKDLPEPMKLLGKDGGSTDPIPGTNEPLLEVKNLTTRFPVKGGLFRRTVANVHAVEDVTFTLNKGQTLSLVGESGCGKSSCGRSILRLVEPTSGQIIIDGKDIRSLSNSALRDARRDMQMVFQDPFASLNPQMTLGDQVAEPLINYNLAKGAELKERVAKLFDRVELPRSFLERYPHELSGGQRQRIAIARALAVNPKLIVSDEAVSALDVSVQAQVLNLMMELQAELGISYLFISHDMAVVERVSHHVGVMYLGRIVEIGPRRSVFESPQHPYTRKLMSAVPVADPKNRMLTGDLDFTPIPSPIFDTTHEAEVSRYVEVAPGHHVLQNKWGGHDGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MWC7</accession>
    <name>A0A1M5MWC7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Peptide/nickel transport system ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1061</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81614.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899798.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1061"/>
    <dbReference type="EnsemblBacteria" id="SHG81614">
        <property type="protein sequence ID" value="SHG81614"/>
        <property type="gene ID" value="SAMN05444003_1061"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015833">
        <property type="term" value="P:peptide transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013563">
        <property type="entry name" value="Oligopep_ABC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08352">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="6">
        <location>
            <begin position="2"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="6">
        <location>
            <begin position="308"/>
            <end position="553"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="38"/>
            <end position="45"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="344"/>
            <end position="351"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG81614.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="574" mass="62350" checksum="4A16D2F69131483E" modified="2017-03-15" version="1">MLTVENLTVQFPGRFGTFTAIEDVSLTIERGEIHGLVGESGAGKSTIGAAIIGLLQPPGFVSNGSIHLGDTDLLILGDDEAHQTRGKRISMIFQDPQTSLNPLMTIEDQLIETIQTHEDISTEDARSRAISLLEETGIENASQRIKAYPHQFSGGMRQRVVIALALCTNPELIIADEPTTALDVAVQSQVLDLIRGLANTRGIGFLLITHDIGVIAQTCQNVTVLRGGQVMEHGPTQQVLNAPEHPYTQSLMAAVPRLDVKLDRFLVPDTEEGVETAPIGRSAEDAERWLRSGDEMLGQGLSMEGVTVKFTGARDSLFRKPEVFVALDDVSMTIRPGTVMGLVGESGSGKSTMAKVLTGLVQPTAGTLKLNDSTLPLARQRGRKDPSRRVIQMVFQDPYSSLNSRHRIGDILAEPLWLYGLENDRAKRRDLAAAMLDLVGLSADAINRYPHQFSGGQRQRIAVARSLLARPRVLICDEPTSALDVSIQAQVLNLLKDLQARFSLTILFISHNLAVVRQMSDDITVLKSGKVVEAGPSEAFFNDPQADYSQELLSLTPNYVGQKGVASQTLVTEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MYB8</accession>
    <name>A0A1M5MYB8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 8">Phosphoglucosamine mutase</fullName>
            <ecNumber evidence="6 8">5.4.2.10</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">glmM</name>
        <name evidence="13" type="ORF">SAMN05444003_1090</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 8">Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6 8">
            <text>alpha-D-glucosamine 1-phosphate = D-glucosamine 6-phosphate</text>
            <dbReference type="Rhea" id="RHEA:23424"/>
            <dbReference type="ChEBI" id="CHEBI:58516"/>
            <dbReference type="ChEBI" id="CHEBI:58725"/>
            <dbReference type="EC" id="5.4.2.10"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="6">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="PTM">
        <text evidence="6">Activated by phosphorylation.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the phosphohexose mutase family.</text>
    </comment>
    <dbReference type="EC" id="5.4.2.10" evidence="6 8"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82205.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899822.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1090"/>
    <dbReference type="EnsemblBacteria" id="SHG82205">
        <property type="protein sequence ID" value="SHG82205"/>
        <property type="gene ID" value="SAMN05444003_1090"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008966">
        <property type="term" value="F:phosphoglucosamine mutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05802">
        <property type="entry name" value="GlmM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01554_B">
        <property type="entry name" value="GlmM_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005844">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016055">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-I/II/III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005845">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005846">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005843">
        <property type="entry name" value="A-D-PHexomutase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036900">
        <property type="entry name" value="A-D-PHexomutase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016066">
        <property type="entry name" value="A-D-PHexomutase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005841">
        <property type="entry name" value="Alpha-D-phosphohexomutase_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006352">
        <property type="entry name" value="GlmM_bact"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02878">
        <property type="entry name" value="PGM_PMM_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02879">
        <property type="entry name" value="PGM_PMM_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02880">
        <property type="entry name" value="PGM_PMM_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00408">
        <property type="entry name" value="PGM_PMM_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00509">
        <property type="entry name" value="PGMPMM"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53738">
        <property type="entry name" value="SSF53738"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55957">
        <property type="entry name" value="SSF55957"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01455">
        <property type="entry name" value="glmM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00710">
        <property type="entry name" value="PGM_PMM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6 8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4 6 7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 6 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 6" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PGM_PMM_I" evidence="10">
        <location>
            <begin position="3"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="domain" description="PGM_PMM_II" evidence="11">
        <location>
            <begin position="159"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="domain" description="PGM_PMM_III" evidence="12">
        <location>
            <begin position="259"/>
            <end position="367"/>
        </location>
    </feature>
    <feature type="domain" description="PGM_PMM_IV" evidence="9">
        <location>
            <begin position="389"/>
            <end position="442"/>
        </location>
    </feature>
    <feature type="active site" description="Phosphoserine intermediate" evidence="6">
        <location>
            <position position="103"/>
        </location>
    </feature>
    <feature type="binding site" description="via phosphate group" evidence="6">
        <location>
            <position position="103"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="242"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="244"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="246"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="Phosphoserine" evidence="6">
        <location>
            <position position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01554"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU004326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004327"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF02879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF02880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHG82205.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="447" mass="47240" checksum="6B71D019A04A578F" modified="2017-03-15" version="1">MTRKLFGTDGVRGTANTYPMTADMALKIGAAAGRYFRNDGSNGHRVVIGKDTRLSGYMFENALTAGLTSTGMNVLLLGPVPTPAVGLLTTSMRADVGIMISASHNPHHDNGIKFFGPDGFKLSDEAEMEIERLIASDIEPAKAENIGRAKRIDDGRFRYAERVKSTLPSGMRLDGLKVVIDCANGAAYRAAPEILWELGATVVTVGTDPNGFNINENCGSTYTDTAAAAVVAHGADVGICLDGDADRVMIIDETGAVADGDQIMALLATQWADAGRLTGGTLVATVMSNLGLERHMDAKGLRLERTGVGDRYVVEAMRQGGFNLGGEQSGHIVMTDYATTGDGLLAGLQFLCAMIETGRKASALTQQFDTVPQLLKNVRYAVGSDPLSADTVKTSIADAETKLQGKGRLLIRKSGTEPLVRVMAECEDPDLLVQVVDGIVAEVEAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N085</accession>
    <name>A0A1M5N085_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">EamA-like transporter family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1105</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG82579">
        <property type="protein sequence ID" value="SHG82579"/>
        <property type="gene ID" value="SAMN05444003_1105"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="49"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="74"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="103"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="130"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="163"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="193"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="227"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="259"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="283"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="163"/>
            <end position="298"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG82579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="302" mass="32712" checksum="2A81C62AC9E958F8" modified="2017-03-15" version="1">MTLSEWIVILSGTAEGARLAAGLALMSAFAHAVFGALQKGRHDPWLTRGAIDGWLVVISAPVALFLVPWPSSEIAVLLAGALAIHFLYKLTMALAYERAAYTVVYPVVRGTGPIVTVIAASLIFQESFTGLQWLGVLCLSGGILMIAVLNLRQETLDPLALRLGLMWAILGGVLVAIYTIFDAYSIRQSPDPFTFLAWFFFITALDFPIIGWWRYRRMDAPPDLGPLLFRGFAGAVIAWISFGGVMLATRLDKVGEAAVLRETSTVFAALIGWLVLREKVGITRIFLMALVALGAVIVEMGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N1I6</accession>
    <name>A0A1M5N1I6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized conserved protein YndB, AHSA1/START domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1139</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the AHA1 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83418.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899862.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1139"/>
    <dbReference type="EnsemblBacteria" id="SHG83418">
        <property type="protein sequence ID" value="SHG83418"/>
        <property type="gene ID" value="SAMN05444003_1139"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013538">
        <property type="entry name" value="Activator_of_Hsp90_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08327">
        <property type="entry name" value="AHSA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006817"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG83418.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="156" mass="17276" checksum="34A1DE7A6C388BFF" modified="2017-03-15" version="1">MSDNWARIEREFDASIDAVWAMWTEAEKFQSWYGPNGFTIPVAEMDVTVGGTRKISMEMKTPERTMQMWFIGEYKEISPKTRLVYSESMCDPDGNMLSPASMGMPEGTPDTTEVVVQLEDLGGRTRMVLTHVGVPAGSPGEGGWMQAIEKMAGLLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N2N9</accession>
    <name>A0A1M5N2N9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">RNA polymerase sigma factor RpoD</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Sigma-70</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rpoD</name>
        <name evidence="11" type="ORF">SAMN05444003_1158</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Interacts transiently with the RNA polymerase catalytic core.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the sigma-70 factor family. RpoD/SigA subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83856.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899879.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1158"/>
    <dbReference type="EnsemblBacteria" id="SHG83856">
        <property type="protein sequence ID" value="SHG83856"/>
        <property type="gene ID" value="SAMN05444003_1158"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
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        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
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    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
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        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.220.120">
        <property type="match status" value="1"/>
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    <dbReference type="HAMAP" id="MF_00963">
        <property type="entry name" value="Sigma70_RpoD_SigA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000943">
        <property type="entry name" value="RNA_pol_sigma70"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009042">
        <property type="entry name" value="RNA_pol_sigma70_r1_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
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    <dbReference type="InterPro" id="IPR007624">
        <property type="entry name" value="RNA_pol_sigma70_r3"/>
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        <property type="entry name" value="RNA_pol_sigma70_r4"/>
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        <property type="entry name" value="RNA_pol_sigma_70_non-ess"/>
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        <property type="entry name" value="RNA_pol_sigma_70_r1_1"/>
    </dbReference>
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        <property type="entry name" value="RNA_pol_sigma_70_r1_1_sf"/>
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        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
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        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
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        <property type="entry name" value="RNA_pol_sigma_RpoD_C"/>
    </dbReference>
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    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
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    </dbReference>
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    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
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    </dbReference>
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        <property type="match status" value="2"/>
    </dbReference>
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        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="RpoD_Cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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    </dbReference>
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    </dbReference>
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    <keyword evidence="1 6" id="KW-0963">Cytoplasm</keyword>
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    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
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    <keyword evidence="5 6" id="KW-0804">Transcription</keyword>
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        <location>
            <begin position="450"/>
            <end position="463"/>
        </location>
    </feature>
    <feature type="domain" description="RNA_pol_sigma70" evidence="10">
        <location>
            <begin position="619"/>
            <end position="645"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="6">
        <location>
            <begin position="620"/>
            <end position="639"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="188"/>
            <end position="236"/>
        </location>
    </feature>
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        <location>
            <begin position="426"/>
            <end position="496"/>
        </location>
    </feature>
    <feature type="region of interest" description="Sigma-70 factor domain-3" evidence="6">
        <location>
            <begin position="505"/>
            <end position="581"/>
        </location>
    </feature>
    <feature type="region of interest" description="Sigma-70 factor domain-4" evidence="6">
        <location>
            <begin position="594"/>
            <end position="647"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="7">
        <location>
            <begin position="405"/>
            <end position="432"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Interaction with polymerase core subunit RpoC" evidence="6">
        <location>
            <begin position="450"/>
            <end position="453"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00963"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
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    </evidence>
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            <dbReference type="SAM" id="MobiDB-lite"/>
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            <dbReference type="PROSITE" id="PS00716"/>
        </source>
    </evidence>
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            <dbReference type="EMBL" id="SHG83856.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="660" mass="75087" checksum="3BC4A692032C2821" modified="2017-03-15" version="1">MAAKDTDDRKPDQEDVSLDMSQAAVKKMIADARERGYITYDQLNAVLPPDQVSSDQIEDVMSMLSEMGIQVTEEEESEESTEEQGSTEVATVKGPGEVAIATGETEKLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMILGLCESPLTFQAITIWRDELLNEDILLRDVIDLETTFGNQMGEDGEEEEVVASPTAAAAPAAKKEEAQELDADGNPIANDDDDDDDDAANMSLAAMEASLKPRVLETLDYIARDFAQLSEMQDARMSATLNEDSSFSDKEEKKYQKLRQEIVDYVNSLHLHNNRIEALIDQLYGINRRIMSIDSAMVKLADQARINRREFIDAYRGRELDPNWLADMGEKTGRGWQMLMERSTDKIEELRGDMAQVGQYVGVDITEFRRIVQQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAILPLDSAIQENLKETTTRVLSSLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N308</accession>
    <name>A0A1M5N308_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1162</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
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            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83954.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1162"/>
    <dbReference type="EnsemblBacteria" id="SHG83954">
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        <property type="gene ID" value="SAMN05444003_1162"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG83954.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="182" mass="20193" checksum="B73DEFFB44CDBC60" modified="2017-03-15" version="1">MIGLVNSVRTRLSTFFKEERGSATLDFVIALPMVAFYFGSAYEGGVLSMRNVVLQHAVDATVRQVRIGQIPFATHENLTETICDYGSIIPDCDQNLRLEMVRIDPRNWIEPSDEVACVDREDQGNPVINFNPGLNNELMVLRVCALFDPMMPTTGLGKEIPKKSGGAYALVATSSYVMEPFQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N632</accession>
    <name>A0A1M5N632_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DnaJ like chaperone protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1210</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85050.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
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        <property type="gene ID" value="SAMN05444003_1210"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
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        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="DjlA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001623">
        <property type="entry name" value="DnaJ_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036869">
        <property type="entry name" value="J_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029024">
        <property type="entry name" value="TerB-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00226">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05099">
        <property type="entry name" value="TerB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00271">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF158682">
        <property type="entry name" value="SSF158682"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46565">
        <property type="entry name" value="SSF46565"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50076">
        <property type="entry name" value="DNAJ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="J" evidence="1">
        <location>
            <begin position="162"/>
            <end position="226"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG85050.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="226" mass="25345" checksum="FF1C20141500D7C5" modified="2017-03-15" version="1">MSIWTRISEALSALAAGEGLSAVFDKLRTSPEKTVAFTIAVIALGAKMAKADGHVTRDEVTAFREIFHIPKSEEANAARLFNMARTDVAGYDVYARRIKAMYGEDDSALCDLMEGLFHIAMADGEYHPGEDAFLHNVSDIFGFDERRFVRIRAQFVPDAERDPYDVLGVAPEMPIADIKKVWRQRVIETHPDQLIARGVPEEALKIAEKRMIQINRAWEQISEAHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N9L4</accession>
    <name>A0A1M5N9L4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cytosine/adenosine deaminase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1237</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85703.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899947.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1237"/>
    <dbReference type="EnsemblBacteria" id="SHG85703">
        <property type="protein sequence ID" value="SHG85703"/>
        <property type="gene ID" value="SAMN05444003_1237"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016810">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011059">
        <property type="entry name" value="Metal-dep_hydrolase_composite"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01979">
        <property type="entry name" value="Amidohydro_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51338">
        <property type="entry name" value="SSF51338"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidohydro-rel" evidence="1">
        <location>
            <begin position="54"/>
            <end position="416"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG85703.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="444" mass="47490" checksum="AF03F9FC7A66D5FA" modified="2017-03-15" version="1">MAETLLKNARCVLTMNDAQDELSNVNILLKDGVIADIGVGLETAGEVVDASHFVVTPGLVNTHHHLYQTLTRAVPGAQDALLFGWLQTLYPIWSKFGPEEMFVSAQVGLAELALSGCTMTSDHLYLYPNGSRLDDTIAAAQDVGLRFHPTRGSMSIGESDGGLPPDSLVEQEAAILEDSIRLVDAFHDPSEGAMVRVGLAPCSPFSVSRDLMRESALLARDKSVMMHTHLAENDEDIAYSLEKFGCRPGQYAEDLGWTGDDVWHAHCVKLDGQEIDLFAKSHTGVAHCPCSNCRLGSGIAPVRAMRDAGVNVALGVDGSASNDVGNLMAEARQTMLLQRVANGVDAMSAREALYIATRGGAEVLGRNDCGQISVGKRADLALWDVRGVEAAGSWDPAALLLAGPSKVSHLFVEGRQIVRDGHIVTIDLGKICVRQNQLAMALAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NAF9</accession>
    <name>A0A1M5NAF9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">RNA polymerase, sigma subunit, ECF family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1276</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86442.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899980.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1276"/>
    <dbReference type="EnsemblBacteria" id="SHG86442">
        <property type="protein sequence ID" value="SHG86442"/>
        <property type="gene ID" value="SAMN05444003_1276"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="2">
        <location>
            <begin position="29"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="3">
        <location>
            <begin position="124"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG86442.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="193" mass="21389" checksum="59CFA701FC594E80" modified="2017-03-15" version="1">MTDLSNAPDAALLVAYANGDPDAATVLTRRLLPKVLGQATRMLNDRAEAEDVAQEAMIRLWKVAPDWRQDEAKVSTWLYRVVANLCTDRLRKRRGNVGLDQIAEVDDGNPSAARELQSKRRVFALKYALAQLPERQAQAVALRHLEGLSNPEIAEIMDITVTAVENLTARGKRSLIVLLAEQKAELGFEDDTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NGV1</accession>
    <name>A0A1M5NGV1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Nucleoside-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1414</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900100.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1414"/>
    <dbReference type="EnsemblBacteria" id="SHG88816">
        <property type="protein sequence ID" value="SHG88816"/>
        <property type="gene ID" value="SAMN05444003_1414"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003760">
        <property type="entry name" value="PnrA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02608">
        <property type="entry name" value="Bmp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012635431" evidence="2">
        <location>
            <begin position="23"/>
            <end position="359"/>
        </location>
    </feature>
    <feature type="domain" description="Bmp" evidence="3">
        <location>
            <begin position="27"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02608"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG88816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="359" mass="38662" checksum="54756687D0FEC943" modified="2017-03-15" version="1">MKLKTLLTSVALAAGLATGAAADGHEKTKVGFVYVGPIGDGGWTYEHHQGLLAVEEEFGDQVETVYVESVPEGADAERVMTQMALEGADLIFTTSFGYMDPTINVAAKFPDVKFEHATGFKRADNVSTYSARFYEGRAVQGHIAGRMTESNIIGYIASFPIPEVVRGINSAYIHASRVNPDVEFKIIWVYTWFDPAKEAEAANVLIEQGADIVLQHTDSTAPQAAAQAAGGVYTFGQASDMAEFGPEPRISSIIDNWAPYYIERTQAVIDGTWVSEDTFDGIDTGMVEIGEISDVVPADVKAEALALIESMRTGEYHPFTGPLNKQDGSAWLAEGEVIGVGDLLGMNFYVEGVSGEIPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NHS0</accession>
    <name>A0A1M5NHS0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Nucleoside ABC transporter membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1411</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88759.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900097.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1411"/>
    <dbReference type="EnsemblBacteria" id="SHG88759">
        <property type="protein sequence ID" value="SHG88759"/>
        <property type="gene ID" value="SAMN05444003_1411"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="65"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="95"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="117"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="149"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="201"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="249"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="273"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="301"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="325"/>
            <end position="344"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG88759.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="360" mass="37936" checksum="2F8EEE535C731E95" modified="2017-03-15" version="1">MLRLEKRPQPSRAWTFATPLLAVALTMVFGGILFAALGKNPIGVIRTIFLDPLFSEFSWFYRPQLLIKGAPLVLIAIGLSFGFRAGIWNIGAEGQYIVGAICGAAAGLALYPAETRLIFPLMVLAGALGGWAWAMIPGVLRVKFGTNEILVSLMLVYVAEQLLASMALGLLRNPDGLGFPGSRNLAQWSSSANNELIAGSGMHWGVVAAFIAVIFAYVALSRHIFGFQVKLSGQSPRAATFAGINPGRLILICMGLSGALAGLAGLFEVTGPSGQISIDFNVGYGFTAIIVAFLGRLHPIGILLAGGLMALTYIGGEIAQSNLGLPAAAIQMLQGMLLFFLLAVDVLTNYRIRIGQGAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NJI9</accession>
    <name>A0A1M5NJI9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Exodeoxyribonuclease-5</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1451</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89605.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900135.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1451"/>
    <dbReference type="EnsemblBacteria" id="SHG89605">
        <property type="protein sequence ID" value="SHG89605"/>
        <property type="gene ID" value="SAMN05444003_1451"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027785">
        <property type="entry name" value="UvrD-like_helicase_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13538">
        <property type="entry name" value="UvrD_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="1">
        <location>
            <begin position="43"/>
            <end position="284"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG89605.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="510" mass="56304" checksum="E245FAD253B1F494" modified="2017-03-15" version="1">MTAHNAISFSEDQAAAWDDIAVVLRQSGVDLDESLLQPSRSDASSVLAVVGKAGSGKTLLLAELYRALEEAGVDVISGDWEGRKKKDRRTLAILAPTNKAASVLRNRGVPATTIHRILYTPVYDPEYEKIAEWLAGQGDKPEIEGLTDVALDRAFASYQQNKSIPAALAAAGLRGSDFITGWKRREEPLDIGFIDESSMLDKKQFEDLQEIFPTLLLFGDPAQLPPVQSEGGMVFETLLENRVLKLNRVHRQDADNPILDLAHALADPQLDFYGFERMVTEAAERDERVVLAQRVEAGLMARSPALVWRNATRIRLIHAFRAAYNAPEDELLEGEPLICDGIELPMKHRKKRLDLEARGLTKGAQVIYLGPGRKPGFSRLHVFGAEDPQVSAASIVKIEQEGDEEPFIPFAARMGATFLHGAAVTIHKAQGSQWDTVQVFAPDIYAASRMGRVEAGQPLWKRLAYVAITRAENQLRWVVRNRLGRPEGPLTVDDLRAPAAELTLSAEEQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NJM0</accession>
    <name>A0A1M5NJM0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Regulatory protein, luxR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1453</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89635.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1453"/>
    <dbReference type="EnsemblBacteria" id="SHG89635">
        <property type="protein sequence ID" value="SHG89635"/>
        <property type="gene ID" value="SAMN05444003_1453"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005143">
        <property type="entry name" value="TF_LuxR_autoind-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036693">
        <property type="entry name" value="TF_LuxR_autoind-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03472">
        <property type="entry name" value="Autoind_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75516">
        <property type="entry name" value="SSF75516"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH luxR-type" evidence="2">
        <location>
            <begin position="169"/>
            <end position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG89635.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="261" mass="29540" checksum="73681ABEA708F1C9" modified="2017-03-15" version="1">MIANTIERSLRELGRKKDFAEIQNWVVGLRDWFGVDHVVYHWVSADGEQFGFGSYPPSWVQHYIDKDYLRVHPVILGCFQRFHPVDWKRLDWSSKSARQFRKDAIDFGVGNQGYSVPIRGPNGQFALFTVSHTCSDNRWADLTMTYQRDIILVAHYLNQKALEVKDGGKQKPSRPLSPREVDSLTYLAMGYGRGQVADMLSISEHTLRAYIESARAKLGALNTTHAVARALSEGQILMGGTVLVEESKWPGKDEALIEKVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NJN1</accession>
    <name>A0A1M5NJN1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Glycerol-3-phosphate acyltransferase</fullName>
            <ecNumber evidence="3">2.3.1.15</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1456</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>an acyl-CoA + sn-glycerol 3-phosphate = a 1-acyl-sn-glycero-3-phosphate + CoA</text>
            <dbReference type="Rhea" id="RHEA:15325"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57597"/>
            <dbReference type="ChEBI" id="CHEBI:57970"/>
            <dbReference type="ChEBI" id="CHEBI:58342"/>
            <dbReference type="EC" id="2.3.1.15"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Phospholipid metabolism; CDP-diacylglycerol biosynthesis; CDP-diacylglycerol from sn-glycerol 3-phosphate: step 1/3.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.15" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89702.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900138.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1456"/>
    <dbReference type="EnsemblBacteria" id="SHG89702">
        <property type="protein sequence ID" value="SHG89702"/>
        <property type="gene ID" value="SAMN05444003_1456"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00557">
        <property type="reaction ID" value="UER00612"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004366">
        <property type="term" value="F:glycerol-3-phosphate O-acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102420">
        <property type="term" value="F:sn-1-glycerol-3-phosphate C16:0-DCA-CoA acyl transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016024">
        <property type="term" value="P:CDP-diacylglycerol biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022284">
        <property type="entry name" value="GPAT/DHAPAT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002123">
        <property type="entry name" value="Plipid/glycerol_acylTrfase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12563">
        <property type="entry name" value="PTHR12563"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01553">
        <property type="entry name" value="Acyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00563">
        <property type="entry name" value="PlsC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="domain" description="PlsC" evidence="6">
        <location>
            <begin position="151"/>
            <end position="274"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000510"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004765"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG89702.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="462" mass="52368" checksum="0DD87F8223812E18" modified="2017-03-15" version="1">MTQPITMPLWAFVLLVLFAAVTLASHFLFPSVRWFFRKRAERLVAKLNTRLQRPIEPFKLAKRHDMIQRLIYDPSIAEAVVEYADSHDVPENVAFETAERYAREIVPSFSATLYFTVGMRLAKWISRSLYRIRLGAFDRETLESVDKDATVVFVMNHRSNMDYVLVTYLVSRAGALSYAVGEWARIWPLSSLIKMLGAYFIRRKSRGRLYRAVLARYVQMATDGGVTQAMFPEGGLSLTGAVGEPKLGLLNYIVEGNDPDKRDVVFVPVGLNYDRVLEDQFLVKADITGVRRFRPPVMTALGGTFGYFWRLITRQARGYGTASVGFGTPLSLREYRGKFEDDVLTEAVADELMNRIRDVVPVLSAPLVASAILSDEPDSEADIVRFVEQKLDMLKSKSMPRPKREATELVNDILKRLERRKIVTRNGGQIVATELGRPVLEYYARSIAHHFAEEVEISAIAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NMQ1</accession>
    <name>A0A1M5NMQ1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">TIGR02300 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1488</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90479.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900167.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1488"/>
    <dbReference type="EnsemblBacteria" id="SHG90479">
        <property type="protein sequence ID" value="SHG90479"/>
        <property type="gene ID" value="SAMN05444003_1488"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012644">
        <property type="entry name" value="CHP02300_FYDLN_acid"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09538">
        <property type="entry name" value="FYDLN_acid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02300">
        <property type="entry name" value="FYDLN_acid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="50"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="64"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG90479.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="110" mass="12133" checksum="8030C02CE23F54EB" modified="2017-03-15" version="1">MPKEEWGTKRLCPETGKRFYDLNADPIISPYTGNEVAVDTGKTRTMVADAEDAQTKKMQDASEDDDLVLDDDVDDDDVDADLGDDVLDDDDDDDTVSLDELADVPTSDEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PJ51</accession>
    <name>A0A1M5PJ51_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1671</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH01778.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900493.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH01778">
        <property type="protein sequence ID" value="SHH01778"/>
        <property type="gene ID" value="SAMN05444003_1671"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH01778.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="60" mass="6838" checksum="5FFC61CE9B99848A" modified="2017-03-15" version="1">MTVYDGTAFFKEKDHMLFGLIRLLGYVSLDAEELEAQELVEAVDRAIVIASRHVLEQRVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PLC2</accession>
    <name>A0A1M5PLC2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1709</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02531.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900525.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH02531">
        <property type="protein sequence ID" value="SHH02531"/>
        <property type="gene ID" value="SAMN05444003_1709"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="22"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="75"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH02531.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="108" mass="12059" checksum="3A44725311D597BB" modified="2017-03-15" version="1">MEKARSEYPDAFYFYGNPVTDIAIFLGAFGVEIMLLSVPISVLAAHKIARRYNLFASVVMLPTSLLAPPRDMDDYFFAVVTVVTLIVIFSVAWLWKAADTSRADQSYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PLI7</accession>
    <name>A0A1M5PLI7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Peptidyl-prolyl cis-trans isomerase</fullName>
            <ecNumber evidence="4">5.2.1.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_1713</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 3 4">
            <text>[protein]-peptidylproline (omega=180) = [protein]-peptidylproline (omega=0)</text>
            <dbReference type="Rhea" id="RHEA:16237"/>
            <dbReference type="Rhea" id="RHEA-COMP:10747"/>
            <dbReference type="Rhea" id="RHEA-COMP:10748"/>
            <dbReference type="ChEBI" id="CHEBI:83833"/>
            <dbReference type="ChEBI" id="CHEBI:83834"/>
            <dbReference type="EC" id="5.2.1.8"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the FKBP-type PPIase family.</text>
    </comment>
    <dbReference type="EC" id="5.2.1.8" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02607.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900529.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1713"/>
    <dbReference type="EnsemblBacteria" id="SHH02607">
        <property type="protein sequence ID" value="SHH02607"/>
        <property type="gene ID" value="SAMN05444003_1713"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046357">
        <property type="entry name" value="PPIase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001179">
        <property type="entry name" value="PPIase_FKBP_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00254">
        <property type="entry name" value="FKBP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50059">
        <property type="entry name" value="FKBP_PPIASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4 6" id="KW-0413">Isomerase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3 4" id="KW-0697">Rotamase</keyword>
    <feature type="domain" description="PPIase FKBP-type" evidence="5">
        <location>
            <begin position="7"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH02607.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="144" mass="15386" checksum="C05484557AFF8638" modified="2017-03-15" version="1">MTTAKSGDTVRIHYTGTLTDGSVFDSSEGRDPLEFILGSGMVIAGFDDGVTGMTVGEKKRVEIPCDQAYGPRHDQATQKVPRAEIPDSIPLELGLQLQMQAPNGQPIMVTVSELTDDEVTLDANHALAGKDLIFDLELVSIDAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PN82</accession>
    <name>A0A1M5PN82_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Sulfoacetaldehyde acetyltransferase</fullName>
            <ecNumber evidence="4">2.3.3.15</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_1736</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the TPP enzyme family.</text>
    </comment>
    <dbReference type="EC" id="2.3.3.15" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03049.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900546.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1736"/>
    <dbReference type="EnsemblBacteria" id="SHH03049">
        <property type="protein sequence ID" value="SHH03049"/>
        <property type="gene ID" value="SAMN05444003_1736"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050487">
        <property type="term" value="F:sulfoacetaldehyde acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019529">
        <property type="term" value="P:taurine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017820">
        <property type="entry name" value="Sulphoacetald_Actrfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012000">
        <property type="entry name" value="Thiamin_PyroP_enz_cen_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012001">
        <property type="entry name" value="Thiamin_PyroP_enz_TPP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000399">
        <property type="entry name" value="TPP-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045229">
        <property type="entry name" value="TPP_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011766">
        <property type="entry name" value="TPP_enzyme-bd_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18968">
        <property type="entry name" value="PTHR18968"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02775">
        <property type="entry name" value="TPP_enzyme_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00205">
        <property type="entry name" value="TPP_enzyme_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02776">
        <property type="entry name" value="TPP_enzyme_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="SSF52467"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03457">
        <property type="entry name" value="sulphoacet_xsc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00187">
        <property type="entry name" value="TPP_ENZYMES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0786">Thiamine pyrophosphate</keyword>
    <keyword evidence="5 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TPP_enzyme_N" evidence="10">
        <location>
            <begin position="3"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="domain" description="TPP_enzyme_M" evidence="8">
        <location>
            <begin position="188"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="domain" description="TPP_enzyme_C" evidence="9">
        <location>
            <begin position="405"/>
            <end position="558"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007812"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU362132"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH03049.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="590" mass="63230" checksum="2C39753F3ED58D5A" modified="2017-03-15" version="1">MKMTTEEAFVKTLQAHGIRHAFGIIGSAMMPISDIFPAAGIKFWDCAHEGSAGFMSDGYTRATGEMSMMIAQNGPGITNFVTAVKTAYWNHTPVLLVTPQAANKTIGQGGFQEMEQMNLFADCVAYQEEVRDPSRVCEVLARVISKAHRLSGPAQINIPRDFWTQVVDIEIPEPISFEVSPGGENSVASAAELLSSAKFPVILNGAGVVLSEGGIDASKALAEQLDAPVCVGYQHNDAFPGSHPLFAGPLGYNGSKAGMELIAKADVVLALGTRLNPFSTLPGYGIDYWPTDAKIIQVDINPDRIGLTKKVTVGIVGDAAKVAKGIAAQLADDAGDAGRADRKALIADTKSKWKQELSSMDHEDDDPGTTWNERARAAKPDWMSPRMAWRAIQSALPREAIISSDIGNNCAIGNAYPDFEEGRKYLAPGLFGPCGYGLPSIVGAKIGQPDVPVVGFAGDGAFGIAVNELTAIGRGDWPAITQIVFRNYQWGAEKRNSTLWFDDNFVGTELDTEVSYAGIAQACGLKGVVARTMDELTEVLNTAIKDQMENNKTTLIEVMLNQELGEPFRRDAMKKPVRVAGIDAADMAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PPG3</accession>
    <name>A0A1M5PPG3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Coproporphyrinogen oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_1766</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="5">Porphyrin-containing compound metabolism.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03662.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900571.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1766"/>
    <dbReference type="EnsemblBacteria" id="SHH03662">
        <property type="protein sequence ID" value="SHH03662"/>
        <property type="gene ID" value="SAMN05444003_1766"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00078">
        <property type="reaction ID" value="UER00160"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004109">
        <property type="term" value="F:coproporphyrinogen oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006783">
        <property type="term" value="P:heme biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1500.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001260">
        <property type="entry name" value="Coprogen_oxidase_aer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036406">
        <property type="entry name" value="Coprogen_oxidase_aer_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10755">
        <property type="entry name" value="PTHR10755"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01218">
        <property type="entry name" value="Coprogen_oxidas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000166">
        <property type="entry name" value="Coproporphyri_ox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00073">
        <property type="entry name" value="COPRGNOXDASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102886">
        <property type="entry name" value="SSF102886"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0350">Heme biosynthesis</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023444"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH03662.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="296" mass="33070" checksum="39697DFA3D4C2DAC" modified="2017-03-15" version="1">MSDGFQAEKSKAAAWFGELRDQIVAAFEHLEDTQVEGPTADMLAGRFERTVTKRTADDGSDAGGGVMSVMRGGRVFEKVGVNTSEVFGELGPAAQKAMAARGVPGMEDDPRFWASGISLVAHMENPHAPAVHMNTRMFWTPHAWWFGGGSDLNPCIEYDEDTEHFHATQKSHLDPHGEDLYPKLKEWADEYFYIPHRNRARGVGGIFMDDRCTGDWQADFALTQDIGRAFLPAYVPLVEKRRNTPWSEDDKDTQLVHRGLYAEYNLVYDRGTKFGLTTGHDANAVLMSLPPMAKWT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PPH7</accession>
    <name>A0A1M5PPH7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1765</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH03638">
        <property type="protein sequence ID" value="SHH03638"/>
        <property type="gene ID" value="SAMN05444003_1765"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH03638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="118" mass="12586" checksum="F9CCE6BC2FAA05ED" modified="2017-03-15" version="1">MRLVLKSFLIGISGALTVLMLALSFAPATPKEALALGPDHERMDRVQMRIANVMLTVAPEFAVARLAEATDLPPDLVKAQLIAKAEGREPFSQVAQETASADSDRRIDAGGALFVKAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PVK3</accession>
    <name>A0A1M5PVK3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Dihydroorotase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1868</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05680.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900659.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1868"/>
    <dbReference type="EnsemblBacteria" id="SHH05680">
        <property type="protein sequence ID" value="SHH05680"/>
        <property type="gene ID" value="SAMN05444003_1868"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004151">
        <property type="term" value="F:dihydroorotase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006221">
        <property type="term" value="P:pyrimidine nucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01317">
        <property type="entry name" value="DHOase_IIa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004722">
        <property type="entry name" value="DHOase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011059">
        <property type="entry name" value="Metal-dep_hydrolase_composite"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01979">
        <property type="entry name" value="Amidohydro_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51338">
        <property type="entry name" value="SSF51338"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidohydro-rel" evidence="1">
        <location>
            <begin position="55"/>
            <end position="422"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH05680.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="427" mass="45798" checksum="0C19465E123D8019" modified="2017-03-15" version="1">MTCTVFTNARIIDPVALTDQPGCLVFEDGQIVEVLEGTPDTTDAEVFDCKGKCLAPGIIDIGVKVSEPGERHKESFRSAGMAAVAGGVTTIVTRPDTLPAIDTPETLEFVASRANEDAAVHVLPMAALTKGRDGREMTEIGFLQDAGAAAFTDCDRVVTDTKVYSRALTYAKSLGALVIGHVQEPVLSNGAAVTSGKFASLRGLPSVSAMAERMGLDRDISLLEMTGAKYHVDQITTARALPALERAKRNGLDITAGIGVHHLTLNEFDVADYRTFFKLKPPLRSEDDRQAVIQAVADGLIDIICSMHTPQDEESKRLPYEEAASGAVGLETLLPAALRLYHSDQIDLPRLFRALSLNPARRLGLDAGRLLPGAPADLIVFDPDAPFVLNRTTLKSKSKNTPFDGARMQGKVISTWVAGRNVTDAIH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PVW5</accession>
    <name>A0A1M5PVW5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, AsnC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1884</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06015.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900673.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1884"/>
    <dbReference type="EnsemblBacteria" id="SHH06015">
        <property type="protein sequence ID" value="SHH06015"/>
        <property type="gene ID" value="SAMN05444003_1884"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000485">
        <property type="entry name" value="AsnC-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019888">
        <property type="entry name" value="Tscrpt_reg_AsnC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019887">
        <property type="entry name" value="Tscrpt_reg_AsnC/Lrp_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019885">
        <property type="entry name" value="Tscrpt_reg_HTH_AsnC-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01037">
        <property type="entry name" value="AsnC_trans_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00033">
        <property type="entry name" value="HTHASNC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00344">
        <property type="entry name" value="HTH_ASNC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00519">
        <property type="entry name" value="HTH_ASNC_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50956">
        <property type="entry name" value="HTH_ASNC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH asnC-type" evidence="4">
        <location>
            <begin position="5"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH06015.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="153" mass="17137" checksum="CB42ECECCBA9DCFE" modified="2017-03-15" version="1">MSHEIDEIDRNILKVLQNDASLSVDDISERVALSRNACWRRIKTMEAEGIIKGRVALVDAVKVGVPLTALVLIKTSKHDADWIRDFQAVLAAMPEVVGAQRMTGDLDYVLRVRLADMPAYDDFYRRLTSRISVSDMSASFVMEDIKETTAVPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PWR5</accession>
    <name>A0A1M5PWR5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1899</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06325.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1899"/>
    <dbReference type="EnsemblBacteria" id="SHH06325">
        <property type="protein sequence ID" value="SHH06325"/>
        <property type="gene ID" value="SAMN05444003_1899"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021252">
        <property type="entry name" value="DUF2794"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10984">
        <property type="entry name" value="DUF2794"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH06325.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="130" mass="14915" checksum="0CD8A097C0F42A7A" modified="2017-03-15" version="1">MIVAELAKPRKNSKCFGMTIQPPIPFVAKGQEQVAFHRTELAPILGLYGRMVAAGEWRDYGISNLREVAVFSVFRRTAEHPLYRIEKRPKLRLKQGQYAVVGMDGRILKRGNDLRQVLRVLERKLIRAVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q4X6</accession>
    <name>A0A1M5Q4X6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Enoyl-CoA hydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2044</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09022.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900802.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2044"/>
    <dbReference type="EnsemblBacteria" id="SHH09022">
        <property type="protein sequence ID" value="SHH09022"/>
        <property type="gene ID" value="SAMN05444003_2044"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018376">
        <property type="entry name" value="Enoyl-CoA_hyd/isom_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00166">
        <property type="entry name" value="ENOYL_COA_HYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH09022.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="258" mass="28175" checksum="150E161B722AFDB4" modified="2017-03-15" version="1">MAYETIIVAIEDHVATITLNRPDALNALSQKLLKELAQAMEEADASDKVRCIVLTGSEKAFAAGADITEMADQSFVDIYTSAFFEPETTRFNRTRKPIIAAVSGYALGGGCELAMMCDFIIASDTAKFGQPEINLGVIAGIGGTQRLTRFVGKSKAMDMNLTGRMMDAEEAERSGLVSRVVPANKLLQEAKDAASKIAEKSLLASMAAKDAVNRSYETTLAEGLNYERRMFQALFATEDQKEGMAAFREKREANFRDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q5A9</accession>
    <name>A0A1M5Q5A9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase, FkbM family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2048</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09106.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900806.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2048"/>
    <dbReference type="EnsemblBacteria" id="SHH09106">
        <property type="protein sequence ID" value="SHH09106"/>
        <property type="gene ID" value="SAMN05444003_2048"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006342">
        <property type="entry name" value="FkbM_mtfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05050">
        <property type="entry name" value="Methyltransf_21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01444">
        <property type="entry name" value="fkbM_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransf_21" evidence="1">
        <location>
            <begin position="77"/>
            <end position="221"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH09106.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="260" mass="28628" checksum="4362C011B92C3813" modified="2017-03-15" version="1">MTPQDRIKSAREELLKAQKELNEALGSTKTRARAQIVQSLHEIGGMLSPARPFASQAGQDRVVDHIFKGKIGGTFIDVGGYDGVTGSNSLFFEKWRGWKGVLVEPVELHRTKAKAARQCPCLPYAVSADAGEAEFLTVESGFTQMSGLVSSYDTKLLSRVRSDQRHKESISKVETKPLAAILKEVGIEHPDFISLDIEGGEMDVLMSFPFEDHEVKTWSIENNNGSSELGKLMLSKGYRLIEFCGPDEVYAHQSLLPVSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q5W8</accession>
    <name>A0A1M5Q5W8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Demethylspheroidene O-methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2070</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09544.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900826.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2070"/>
    <dbReference type="EnsemblBacteria" id="SHH09544">
        <property type="protein sequence ID" value="SHH09544"/>
        <property type="gene ID" value="SAMN05444003_2070"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008171">
        <property type="term" value="F:O-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031725">
        <property type="entry name" value="ASMT_dimerisation"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016461">
        <property type="entry name" value="COMT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001077">
        <property type="entry name" value="O_MeTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11746">
        <property type="entry name" value="PTHR11746"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16864">
        <property type="entry name" value="Dimerisation2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00891">
        <property type="entry name" value="Methyltransf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005739">
        <property type="entry name" value="O-mtase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51683">
        <property type="entry name" value="SAM_OMT_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Dimerisation2" evidence="4">
        <location>
            <begin position="49"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="domain" description="Methyltransf_2" evidence="3">
        <location>
            <begin position="141"/>
            <end position="354"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="235"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="279"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01020"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00891"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF16864"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH09544.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="376" mass="40758" checksum="921FF6B7CDF2BA54" modified="2017-03-15" version="1">MSDIGLNQPTAPSRKRFSFNRLFASPTFQRRMARLPLIKGVVRREGEEMFDIVAGFCHAQILQALIKLDILDDLLDGPQSLDSLSVRHSVPIERMRILLDASVSLNLLKSKRGGYALTRRGAALSGVPGLKGMIAHHDVLYRDLADPVAFFRGETETELAQFWPYVLGAGAAEDPAAAATYSKLMADSQALVAEDTLSLVNLDRTEHLMDVGGGTGAFLGHVAQAYPNLQLTLFDLPAVVPEARQQFADLGVSQRTKIVPGSFRDDLLPEGADTISLLRVLYDHADDTVLALLRSVYDALPTGGQILISEPMTGGAQPHRAGNAYFAIYCLAMQTGRARSAAEISDLLRQAGFANIGKPMTRRPFVTTAITAVKSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q6F2</accession>
    <name>A0A1M5Q6F2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">FAR-17a/AIG1-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2085</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09837.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900909.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH09837">
        <property type="protein sequence ID" value="SHH09837"/>
        <property type="gene ID" value="SAMN05444003_2085"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006838">
        <property type="entry name" value="Far-17a_AIG1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04750">
        <property type="entry name" value="Far-17a_AIG1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="7"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="39"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="69"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="109"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="133"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="184"/>
            <end position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH09837.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="218" mass="24934" checksum="F0B6198F883062AA" modified="2017-03-15" version="1">MTSKPVLIYRWIVFLLAGFFCIRTLFLSDFSEFGGPFRYLTIWALFLSFFAASRMMALMEGRSEKRWDGFVAMTSVINAMVVFLYWRLFLADPMSVTRDGELGEFYLELYLHGLGPLLQWIDAIFIHKSFRKIPAAIAWLAGVITLYLTWGETLVSWNNDKPEGSVTSGIPYPFLNNMELSDRLIFYGANMVIALVLLMIFAGIAWLVRRRSPAPVAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q7K5</accession>
    <name>A0A1M5Q7K5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Two-component system, OmpR family, phosphate regulon response regulator OmpR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2092</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09982.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900847.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2092"/>
    <dbReference type="EnsemblBacteria" id="SHH09982">
        <property type="protein sequence ID" value="SHH09982"/>
        <property type="gene ID" value="SAMN05444003_2092"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="7"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="5">
        <location>
            <begin position="133"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="3">
        <location>
            <begin position="133"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH09982.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="233" mass="26013" checksum="7A05AD4C92FDEAF5" modified="2017-03-15" version="1">MNSEDAHLLIVDDDERIRGLLQKFLVRNGFLVSSARDAAHARRILSGLEFDLIVLDVMMPGEDGMSLCRDLRSKIETPILLLTAKGETDDRINGLESGADDYLAKPFEPKELLLRINAILRRVPAAEPTTVAPTVLNLGDIRYDIARGEMWQGESLVRLTATESQLMRIFSSAPGEAMTRARLVEELSRSGGQTQERAVDVQITRLRRKIEADPKQPRYLQTVRGAGYMLAPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QH34</accession>
    <name>A0A1M5QH34_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, GntR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2117</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH13402.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900917.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2117"/>
    <dbReference type="EnsemblBacteria" id="SHH13402">
        <property type="protein sequence ID" value="SHH13402"/>
        <property type="gene ID" value="SAMN05444003_2117"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011711">
        <property type="entry name" value="GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008920">
        <property type="entry name" value="TF_FadR/GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07729">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00035">
        <property type="entry name" value="HTHGNTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00895">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48008">
        <property type="entry name" value="SSF48008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="4">
        <location>
            <begin position="8"/>
            <end position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH13402.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="228" mass="25499" checksum="823B1517B72AF1B9" modified="2017-03-15" version="1">MSNITKEKLAAEDIAAQLTNAVHEHRLKPGAKLREDEVSDVFGVSRTVVRQALRALAFEGLLTIERNRGAFVSKPSLKEAHEVFQARALLEPSTARAAAERTTAADIVLLERHIKEEHEALDQDRPGLALKLSGDFHLEIARIADQQTIEQFLKQLVSRSSLVIALYWKRRNALCESNAHHALVDALRNHDGSAAEELMKGHLLDIYSQLDLREYDEGATSLKEALRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QID1</accession>
    <name>A0A1M5QID1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Phage integrase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2125</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH13570.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900925.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2125"/>
    <dbReference type="EnsemblBacteria" id="SHH13570">
        <property type="protein sequence ID" value="SHH13570"/>
        <property type="gene ID" value="SAMN05444003_2125"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tyr recombinase" evidence="2">
        <location>
            <begin position="166"/>
            <end position="344"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH13570.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="364" mass="41289" checksum="763CDB3D415879A4" modified="2017-03-15" version="1">MPLQIYKRGRVYWAKGWIEYNGRPIAGPYRRSTKASTEEGARDWINHETERQIRRYVVGDEPSKTFSDAIMLYNASPKAAKQLIPIVEAIGDLSLGAISGALLKSLGPKLKPKASTDTWWREIVTPASAVINNSHELEGTPLIRVKPYDKFERIAQDKRRGKLSRVERTPADKEWIEAFCRAADPYNAALVRFMFETAARIDQAVSLEPDDLRPHENKVRVKAQKGHPESWITVSPQMMDELLALPPKRPKNRKTGKLMKARVFGYGSSTGYNTRWKTICRRAGIPYLSAHPAGRHGFFTELVVRQGVDPVTAAKAGRWSDPNLPMRIYAHAETDEADIRARFRTNHVQDDPVQSPKQQKSHKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-06-02" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QJC7</accession>
    <name>A0A1M5QJC7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2141</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH13879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900947.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH13879">
        <property type="protein sequence ID" value="SHH13879"/>
        <property type="gene ID" value="SAMN05444003_2141"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="45"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="51"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH13879.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="84" mass="9199" checksum="3FDA7608F8623CCA" modified="2017-03-15" version="1">MAFREFLIAGSVATLALGTVAYAQTNTARISEDVVAEITVEDASQFAERVSRTTRGDRDDCDDRKGHDKDELEDGDSQSDEEEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QJT8</accession>
    <name>A0A1M5QJT8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">3'(2'),5'-bisphosphate nucleotidase CysQ</fullName>
            <ecNumber evidence="5">3.1.3.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">3'(2'),5-bisphosphonucleoside 3'(2')-phosphohydrolase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">3'-phosphoadenosine 5'-phosphate phosphatase</fullName>
            <shortName evidence="5">PAP phosphatase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">cysQ</name>
        <name evidence="6" type="ORF">SAMN05444003_2163</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Converts adenosine-3',5'-bisphosphate (PAP) to AMP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>adenosine 3',5'-bisphosphate + H2O = AMP + phosphate</text>
            <dbReference type="Rhea" id="RHEA:10040"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58343"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="3.1.3.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell inner membrane</location>
            <topology evidence="5">Peripheral membrane protein</topology>
            <orientation evidence="5">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the inositol monophosphatase superfamily. CysQ family.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.7" evidence="5"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14345.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2163"/>
    <dbReference type="EnsemblBacteria" id="SHH14345">
        <property type="protein sequence ID" value="SHH14345"/>
        <property type="gene ID" value="SAMN05444003_2163"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008441">
        <property type="term" value="F:3'(2'),5'-bisphosphate nucleotidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046855">
        <property type="term" value="P:inositol phosphate dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046854">
        <property type="term" value="P:phosphatidylinositol phosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006790">
        <property type="term" value="P:sulfur compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02095">
        <property type="entry name" value="CysQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006240">
        <property type="entry name" value="CysQ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000760">
        <property type="entry name" value="Inositol_monophosphatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020550">
        <property type="entry name" value="Inositol_monophosphatase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00459">
        <property type="entry name" value="Inositol_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00377">
        <property type="entry name" value="IMPHPHTASES"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01331">
        <property type="entry name" value="bisphos_cysQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00630">
        <property type="entry name" value="IMP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="2 5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="87"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="85"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="87"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="88"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005289"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02095"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH14345.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="265" mass="28594" checksum="6D0545CBC9C997E4" modified="2017-03-15" version="1">MDNAKLVATMRTLALEAGDEIMRIYNGPDFEVKTKSDESPVTEADEAADALISAGLRETFPDVALVTEEQAASHAETASTFLIVDPLDGTKEFVHRRGDFTVNIAYVVDGLPVLGIVYAPAKDRLFYTQADGSSVEETGPFSKAEIGETRPISVSNPNNSSLLVVASKSHRNQATDDYISKYAVEDMKSAGSSLKFCLVATGEADIYPRLGRTMEWDTAAGHAVLKGAGGDVIRFDDHTPLTYGKDTFANPFFIAYSPGVELKAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QPG6</accession>
    <name>A0A1M5QPG6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Predicted lipid-binding transport protein, Tim44 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2233</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the Tim44 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901098.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2233"/>
    <dbReference type="EnsemblBacteria" id="SHH15771">
        <property type="protein sequence ID" value="SHH15771"/>
        <property type="gene ID" value="SAMN05444003_2233"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006886">
        <property type="term" value="P:intracellular protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039544">
        <property type="entry name" value="Tim44-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007379">
        <property type="entry name" value="Tim44-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016985">
        <property type="entry name" value="UCP031890_Tim44-rel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10721">
        <property type="entry name" value="PTHR10721"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04280">
        <property type="entry name" value="Tim44"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF031890">
        <property type="entry name" value="UCP031890_transporter_Tim44"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00978">
        <property type="entry name" value="Tim44"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="2" id="KW-0999">Mitochondrion inner membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tim44" evidence="5">
        <location>
            <begin position="71"/>
            <end position="219"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022792"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00978"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH15771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="219" mass="24163" checksum="383800AF3C1776DB" modified="2017-03-15" version="1">MNSPIIQLLVLAGIALFLILRLRGVLGTREGFERPPVQADQHKRVKGPEFEVIEGGPDRDITDHVAEDSDAAKALAEMKRVDPSFNVSEFLQGARGAYEMILMAFEKGDLASVTPFISEDVYEALESVVDDRINKGLTVEATFVGISDLGLKDAEFDSTSKEAELTVRFTGELTYQVRDNAGDIVEGNANEIKRQKDVWTFARVMGTDDPNWRLVATGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QQN0</accession>
    <name>A0A1M5QQN0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">ADP-ribose pyrophosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2266</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the Nudix hydrolase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16405.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901142.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH16405">
        <property type="protein sequence ID" value="SHH16405"/>
        <property type="gene ID" value="SAMN05444003_2266"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020476">
        <property type="entry name" value="Nudix_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020084">
        <property type="entry name" value="NUDIX_hydrolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00502">
        <property type="entry name" value="NUDIXFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00893">
        <property type="entry name" value="NUDIX_BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="3">
        <location>
            <begin position="41"/>
            <end position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003476"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH16405.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="183" mass="20526" checksum="5B4326EA129F8A19" modified="2017-03-15" version="1">MVWKTLESKILLDVSPFLRVRQERIEIRPNEVINDFYQVDLRSFALVVAVLENGNLLMIDQYKHGPRRKVLNFPGGFLEANERPEVAARRELQEETGLEPATLYPLGSFIDNGNQRGCMGHYFLAIGCRQTAAPNPGDLEDFSYVEMTKSEVGEALEMGRIGVIHHVAGWGLAQTKLAELAAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QQX1</accession>
    <name>A0A1M5QQX1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Glycerol-3-phosphate dehydrogenase [NAD(P)+]</fullName>
            <ecNumber evidence="7">1.1.1.94</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">NAD(P)H-dependent glycerol-3-phosphate dehydrogenase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">gpsA</name>
        <name evidence="15" type="ORF">SAMN05444003_2258</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>NAD(+) + sn-glycerol 3-phosphate = dihydroxyacetone phosphate + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:11092"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57597"/>
            <dbReference type="ChEBI" id="CHEBI:57642"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.1.1.94"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7 12">
            <text>NADP(+) + sn-glycerol 3-phosphate = dihydroxyacetone phosphate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:11096"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57597"/>
            <dbReference type="ChEBI" id="CHEBI:57642"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.1.1.94"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Membrane lipid metabolism; glycerophospholipid metabolism.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 11">Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.94" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16251.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901133.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2258"/>
    <dbReference type="EnsemblBacteria" id="SHH16251">
        <property type="protein sequence ID" value="SHH16251"/>
        <property type="gene ID" value="SAMN05444003_2258"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00940"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009331">
        <property type="term" value="C:glycerol-3-phosphate dehydrogenase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004367">
        <property type="term" value="F:glycerol-3-phosphate dehydrogenase [NAD+] activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046167">
        <property type="term" value="P:glycerol-3-phosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046168">
        <property type="term" value="P:glycerol-3-phosphate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006650">
        <property type="term" value="P:glycerophospholipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008654">
        <property type="term" value="P:phospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00394">
        <property type="entry name" value="NAD_Glyc3P_dehydrog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006168">
        <property type="entry name" value="G3P_DH_NAD-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006109">
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    </dbReference>
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    </dbReference>
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        <property type="entry name" value="Glycerol-3-P_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="GPDHDRGNASE"/>
    </dbReference>
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    </dbReference>
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        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
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    <keyword evidence="4 7" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="7 10 11" id="KW-0520">NAD</keyword>
    <keyword evidence="3 7 11" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5 7" id="KW-0594">Phospholipid biosynthesis</keyword>
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        <location>
            <begin position="2"/>
            <end position="151"/>
        </location>
    </feature>
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        <location>
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            <end position="309"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7 9">
        <location>
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            <end position="250"/>
        </location>
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        </location>
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        <location>
            <begin position="7"/>
            <end position="12"/>
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        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
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        <location>
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        </location>
    </feature>
    <feature type="binding site" evidence="7 10">
        <location>
            <position position="134"/>
        </location>
        <ligand>
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            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
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        <location>
            <position position="249"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
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        <location>
            <position position="267"/>
        </location>
        <ligand>
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        </ligand>
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        <location>
            <position position="270"/>
        </location>
        <ligand>
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            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
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        </source>
    </evidence>
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        <source>
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        </source>
    </evidence>
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        <source>
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        </source>
    </evidence>
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        <source>
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    </evidence>
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        </source>
    </evidence>
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        <source>
            <dbReference type="RuleBase" id="RU000439"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="Pfam" id="PF01210"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="Pfam" id="PF07479"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="EMBL" id="SHH16251.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="320" mass="32872" checksum="6AB02B95D8FF3A31" modified="2017-03-15" version="1">MKIAVAGAGAFGTALAISLADADRDVTLVARSQAAADTIKIGQENPKLSGCPLPNSLKVCSDIARYEAADVILLAVPTQKLRTFLSDHSSALSGKYLVACCKGIGLKTLTGPTSIIAECVPDSTPAILTGPSFAFDIARGLPTALTLATSKGQDGEVLQNLLSTRALRVYRSEDTIGAELGGALKNVIAIGAGIAIGNGLGDSARSALMTRGFGEMRQLAEVLGAKPETLNGLSGFGDLALTCTSELSRNFCHGLAIGRGQDPDAKKTVEGISTAQAVVSLATKHDLDLPVCSVVDAICSGKLTPKEALTALLSRPLKEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QSE0</accession>
    <name>A0A1M5QSE0_9RHOB</name>
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        <submittedName>
            <fullName evidence="7">Capsular polysaccharide transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2297</name>
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        <name type="scientific">Cognatiyoonia sediminum</name>
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                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
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        </source>
    </reference>
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    </dbReference>
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            <begin position="31"/>
            <end position="54"/>
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        </source>
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        </source>
    </evidence>
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        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="258" mass="28381" checksum="D51A5797134F638B" modified="2017-03-15" version="1">MTKTAELAAPRSVMALVLREMSSTYGNSPGGYVWAVLQPIGMIVVLSFGFSLLFRTPSLGTSFILFYATGYLPYDMYTQLSQKVGTSIKYSRSMLTYPRVVWLDAILARFVLNFLTLLTVFSIVITGVLLIVNTPTIISLTPILLGISIAALVGLGVGVMNCLLVGLFPVWGIIWKIATRPMFIASGVLFIYEDMGGLVQTILWWNPILHVTGLVRSGFYASYEASYVSLTYCFGLALTLICFGLLFLQANHKQIVNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QTE7</accession>
    <name>A0A1M5QTE7_9RHOB</name>
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        <submittedName>
            <fullName evidence="3">Lysophospholipase L1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2312</name>
    </gene>
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        <name type="scientific">Cognatiyoonia sediminum</name>
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            <taxon>Alphaproteobacteria</taxon>
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        </lineage>
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            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
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    </dbReference>
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        <property type="project" value="UniProt"/>
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    </dbReference>
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    </dbReference>
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        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
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            <begin position="22"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="domain" description="SGNH_hydro" evidence="2">
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            <begin position="28"/>
            <end position="215"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
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            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH17404.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="233" mass="25166" checksum="412E586BB93AB5C3" modified="2017-03-15" version="1">MTSIKIWLVAAFFCAATAVSANTKLLSLGDSRVAGEENRYHHTWRYPLWAGLNAAGCAVDFIGPLEGPDYPNINGIEFDDDHASFGGFTTIDVLETLEIALESGAPDLVILSIGGNDLLEGEPVDDILFRLAQIIDLIRDENSDVTIFLEQIPPGIPSVMRGGQQARFEAFNTGVADVASVKDTSRSRVIAIDMQPGWDGNTMLSDDVHYTLKGASFVAANYEKAIVNELGNC</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QVR3</accession>
    <name>A0A1M5QVR3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative hydroxymethylpyrimidine transport system ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2332</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
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        <lineage>
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            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
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            <taxon>Rhodobacteraceae</taxon>
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        </lineage>
    </organism>
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                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17830.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901250.1">
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    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2332"/>
    <dbReference type="EnsemblBacteria" id="SHH17830">
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        <property type="gene ID" value="SAMN05444003_2332"/>
    </dbReference>
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    </dbReference>
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        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
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    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
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    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
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        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
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        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="2"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="38"/>
            <end position="45"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
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        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH17830.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="242" mass="26066" checksum="50BF90D2C5EBCE48" modified="2017-03-15" version="1">MNEAPSITLQGSHAIDGRTLFDGITLTLPAAEWTCLLGPSGVGKSTILRLILGLDTAGTFTGSIETSDAKPLDNRISYMAQSDLLLPWLTVLENAVLGARLRDEKPDLDRAQTLLARVGLSDHQTKKPAALSGGMRQRAALARTLMEDRPIVLLDEPFSALDAGTRADMQELAAEVLTDKTVMLVTHDPGEAARMAHQIVLLTPSEAKQWPVPPIPPIRPVDAPETLSAQSELLAHMRGFRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QXH0</accession>
    <name>A0A1M5QXH0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2360</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18419.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2360"/>
    <dbReference type="EnsemblBacteria" id="SHH18419">
        <property type="protein sequence ID" value="SHH18419"/>
        <property type="gene ID" value="SAMN05444003_2360"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH18419.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="447" mass="47132" checksum="A06180D4DF31D76C" modified="2017-03-15" version="1">MWLNSLGPNELVPTHVLRARKGSAQSLLALRDTATTSIGTSVTIDVLANDHDPLGGSLSIATATADHGSLVVEANNALTYIPDPDFTGSDVITYGVTSTSGGSANGLVDVLVQPTATPLALTIDAQNTFVLEAASSPIEIEVSQPDTFASTTVVDLSLTSSIPFNCVPPKLPNTLAVGSILTPTPGLWLHPANSPTESRRYDWERDGQTIAADQPSYTITPADHEAELRVVETVDFGAGPAAQASPTIQIPAASTGVSGFDDFTGPNQSLLIPRTTLSGDTWTNVVDVSDVLPWIVGDHLELREPEGGVFAIANIDQSDTTVRCDVSFAQSKSAVGVVARVNGSTENGTLSAYYARYYWNRAEVQLYAFTGDGAIQEIISVDHPRPSLGSQHTIDLTCLGDQISVRWSGATVIAITDTTLSSSGSIGIAHYDTGAELDNFYFEEITP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QZ67</accession>
    <name>A0A1M5QZ67_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methanogenic corrinoid protein MtbC1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2392</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19009.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2392"/>
    <dbReference type="EnsemblBacteria" id="SHH19009">
        <property type="protein sequence ID" value="SHH19009"/>
        <property type="gene ID" value="SAMN05444003_2392"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031419">
        <property type="term" value="F:cobalamin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006158">
        <property type="entry name" value="Cobalamin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036724">
        <property type="entry name" value="Cobalamin-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02310">
        <property type="entry name" value="B12-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52242">
        <property type="entry name" value="SSF52242"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51332">
        <property type="entry name" value="B12_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="B12-binding" evidence="1">
        <location>
            <begin position="120"/>
            <end position="250"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH19009.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="251" mass="26510" checksum="20BFB2DEA741B189" modified="2017-03-15" version="1">MTEYRNSKTTEPRPVSTGGAFGVGDISSLDSNSLVALSLAALSSDRREMKAAMAKAIDAGIPPQDLADLYVPALARQMGDAWCKDEMSFAGVTIGVSRLQSLLRDLGPAWAGDTLAEPDAPTVLLALGKEIYHTLGAMVLAGQLRRKGLSVTLLLGATNDEIVTTLEQGDYDALFLSASIGESLDNLRRMVESVRTKIGEPPPIVIGGTILETETDVRAAIGADHASKDPDEAIALCGLKTQLPKHQEVGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R0U6</accession>
    <name>A0A1M5R0U6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glutathione S-transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2428</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19726.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901395.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2428"/>
    <dbReference type="EnsemblBacteria" id="SHH19726">
        <property type="protein sequence ID" value="SHH19726"/>
        <property type="gene ID" value="SAMN05444003_2428"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006749">
        <property type="term" value="P:glutathione metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036282">
        <property type="entry name" value="Glutathione-S-Trfase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004045">
        <property type="entry name" value="Glutathione_S-Trfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034343">
        <property type="entry name" value="YibF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42673:SF12">
        <property type="entry name" value="PTHR42673:SF12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13417">
        <property type="entry name" value="GST_N_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47616">
        <property type="entry name" value="SSF47616"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50404">
        <property type="entry name" value="GST_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GST N-terminal" evidence="1">
        <location>
            <begin position="1"/>
            <end position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH19726.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="200" mass="22579" checksum="306BCA9FB4F6B4BB" modified="2017-03-15" version="1">MQLIMSPASPFVRKIRVLVREAKLTDVVEEVNIATTPLASASEAVAANPLGRIPALIRDEGPALYDSRVISRYLDDYASSGLYPSSRLWEILTLEATGDGMMDSTVSMTYERRLRPEEQQSEDWINAQWGKVERTLDAIGSRWMSHLEGPLNMGQISVACALSYIDFRHDMRNWREGRKALADWHEGFSDRQSMIDTTPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RFB9</accession>
    <name>A0A1M5RFB9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 9">D-3-phosphoglycerate dehydrogenase</fullName>
            <ecNumber evidence="9">1.1.1.95</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_2552</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the reversible oxidation of 3-phospho-D-glycerate to 3-phosphonooxypyruvate, the first step of the phosphorylated L-serine biosynthesis pathway. Also catalyzes the reversible oxidation of 2-hydroxyglutarate to 2-oxoglutarate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 9">
            <text>(2R)-3-phosphoglycerate + NAD(+) = 3-phosphooxypyruvate + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:12641"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:18110"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:58272"/>
            <dbReference type="EC" id="1.1.1.95"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(R)-2-hydroxyglutarate + NAD(+) = 2-oxoglutarate + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:49612"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15801"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.1.1.399"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4 9">Amino-acid biosynthesis; L-serine biosynthesis; L-serine from 3-phospho-D-glycerate: step 1/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 9">Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.95" evidence="9"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24878.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901893.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2552"/>
    <dbReference type="EnsemblBacteria" id="SHH24878">
        <property type="protein sequence ID" value="SHH24878"/>
        <property type="gene ID" value="SAMN05444003_2552"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00135">
        <property type="reaction ID" value="UER00196"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004617">
        <property type="term" value="F:phosphoglycerate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006564">
        <property type="term" value="P:L-serine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029009">
        <property type="entry name" value="ASB_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006139">
        <property type="entry name" value="D-isomer_2_OHA_DH_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029753">
        <property type="entry name" value="D-isomer_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029752">
        <property type="entry name" value="D-isomer_DH_CS1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006140">
        <property type="entry name" value="D-isomer_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006236">
        <property type="entry name" value="PGDH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045626">
        <property type="entry name" value="PGDH_ASB_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00389">
        <property type="entry name" value="2-Hacid_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02826">
        <property type="entry name" value="2-Hacid_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19304">
        <property type="entry name" value="PGDH_inter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143548">
        <property type="entry name" value="SSF143548"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01327">
        <property type="entry name" value="PGDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00065">
        <property type="entry name" value="D_2_HYDROXYACID_DH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00671">
        <property type="entry name" value="D_2_HYDROXYACID_DH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9" id="KW-0520">NAD</keyword>
    <keyword evidence="7 9" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 9" id="KW-0718">Serine biosynthesis</keyword>
    <feature type="domain" description="ACT" evidence="10">
        <location>
            <begin position="456"/>
            <end position="528"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000646"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00003800"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005216"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00005854"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00021582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023299"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU363003"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH24878.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="531" mass="56536" checksum="0DFB9D89D1E9B8AC" modified="2017-03-15" version="1">MAPKVLISDKLSDAAVQIFKDRGIDVDFKPDLGKDKVELLKVIGDYDGLAIRSATKATEKIIANATNLKVIGRAGIGTDNIDKDAASKAGIIVMNTPFGNMITTAEHAIAMMFAVARQIPEASESTHAGKWEKSKFMGVELTGKTLGVIGAGNIGGIVCDRARGLKMKVIAYDPFLSQEKADKMGVEKVELEELLPRADFLTLHVPKTEQTANMITAERIAMMKKGARIINCARGGLVDEEALAEALKSGHIAGAAFDVFAVEPATDSPLFNLPNVVVTPHLGAATMEAQENVALQVAEQMADYLLTGAVANALNMPSVTAEEAKVMGPWIELSGHLGNFIGQMTDEPVQAINILYDGEASEMNLNALTCAVIAGIMKKVNPDVNMVSAPVIAKERGVQVSTTKQDKSGAFEGYIKVTVVTEKRERSVAGTVFSDGKPRFIQIKGINIDAEIGANMVYTTNEDVPGIIGALGQTMGENNVNIANFTLGRKEAKGEAIALLYVDEPVPAPALKALENTGLFTQVKPLSFDVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RI55</accession>
    <name>A0A1M5RI55_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_2598</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the auxin efflux carrier (TC 2.A.69) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25836.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901731.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2598"/>
    <dbReference type="EnsemblBacteria" id="SHH25836">
        <property type="protein sequence ID" value="SHH25836"/>
        <property type="gene ID" value="SAMN05444003_2598"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004776">
        <property type="entry name" value="Mem_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038770">
        <property type="entry name" value="Na+/solute_symporter_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03547">
        <property type="entry name" value="Mem_trans"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="6"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="36"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="66"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="95"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="122"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="156"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="184"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="213"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="239"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="271"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH25836.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="293" mass="30993" checksum="F5760219D2B5DD72" modified="2017-03-15" version="1">MNLAVTVLNITAPVFILAAVGYVWVKLGFEYRVEFVTRLAMTLSVPCLIFVALIETDVEPDALAALSLASFVAYGLVTVAFAVVVAVWKLDRATYLAPLIFGNTGNLGLPLALFAFGEIGLGYAVIVFAIMGILSFTFGVWLVSGGGSPAKVIKEPLVAATLLGALFLWQGWRPPEFIFNSLDLIGQMAIPIMLITLGVAIARLEIRAVGQAVILSIIKVIVCVACAWGVSVWFELDPIAAAVLIVQVATPVAVTSYLLAEKYGADAQPVAGLVVVSTLLSVVTLPLILSFVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RII8</accession>
    <name>A0A1M5RII8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2612</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26115.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901755.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2612"/>
    <dbReference type="EnsemblBacteria" id="SHH26115">
        <property type="protein sequence ID" value="SHH26115"/>
        <property type="gene ID" value="SAMN05444003_2612"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.70.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011055">
        <property type="entry name" value="Dup_hybrid_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016047">
        <property type="entry name" value="Peptidase_M23"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01551">
        <property type="entry name" value="Peptidase_M23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51261">
        <property type="entry name" value="SSF51261"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012748119" evidence="2">
        <location>
            <begin position="20"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M23" evidence="3">
        <location>
            <begin position="256"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="70"/>
            <end position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH26115.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="370" mass="39475" checksum="7FFEFAE33EF89D8F" modified="2017-03-15" version="1">MIRACVLACLLWWPHLGLAQSSATALDAVKLLDDASARLASAEGARDRVAALTVTVRAYEEGLIAMRAGLRDAAIARRNLQNRLDAKETDVARLLSVLQTLGRSGAPALLLHPNGPTDLARSAMIATEVTPTLQAEVAALQAELEELAILQQLQDTAADTLDRGLKGAQQARAELSEAISQRTDLPKRFEDDPEQMRLLINSAETLSAFASGLTEAFAVENNQIYSTDVKGALSLPLQGQIVRGFNEPNSAGLIRPGIEIAARPKSLITSPTPATVLFVGPLLDYGNVVILEPAPNILFVLAGLSDIYAETGQVIPEAFPIGLLGGQSPVVDEILSETDQGNRGTSTQTLYLEVREGQSPVDPITWFAMN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RUC6</accession>
    <name>A0A1M5RUC6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2694</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH29761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901936.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH29761">
        <property type="protein sequence ID" value="SHH29761"/>
        <property type="gene ID" value="SAMN05444003_2694"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012070372" evidence="2">
        <location>
            <begin position="24"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="29"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH29761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="237" mass="24100" checksum="1DB06D5736AD68A3" modified="2017-03-15" version="1">MTRIATKLTTTGLGLIAVLGLSACGGSSMSPTTGPGAGPGTGPGGNPALEPNVGDATEVQAIRDSINEGLGFRENDNLFGPRNGDAVYSGQWITGLEIENQPEVNALVGEVRMLVDIGGGRNPVSGEISNLNTLQNNRAIELLTGDLDISGNIGGINRRFDSGAEFLGTVSGYFGGDTLENLQINADVSGGWRDSIVGGDPGNVIAGRTTGTANGTPGLGLVDITNGQFRADRDSGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RYZ0</accession>
    <name>A0A1M5RYZ0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2751</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH31023">
        <property type="protein sequence ID" value="SHH31023"/>
        <property type="gene ID" value="SAMN05444003_2751"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH31023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="46" mass="5301" checksum="9B167F7EB9DC6F72" modified="2017-03-15" version="1">MIRLFRTLILILIAFVAGILFDDNGRQELCAAEGGDWRDRTCFLKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S433</accession>
    <name>A0A1M5S433_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Diaminopropionate ammonia-lyase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2849</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33347.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902248.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2849"/>
    <dbReference type="EnsemblBacteria" id="SHH33347">
        <property type="protein sequence ID" value="SHH33347"/>
        <property type="gene ID" value="SAMN05444003_2849"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="PLP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="Trypto_synt_PLP_dependent"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="SSF53686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0456">Lyase</keyword>
    <keyword evidence="2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PALP" evidence="3">
        <location>
            <begin position="18"/>
            <end position="319"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH33347.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="339" mass="35829" checksum="FD8FC519C8D109A3" modified="2017-03-15" version="1">MTHSNLFDVSLPLALLGQCPVYAASPLDQRMIHGRSILIKDETDRMGLGAFKALGGVYAVAKLIEARHSGAVEAAGFQSAALRELASEMTFVCASAGNHGLAVAAGAKLFGACARIFLSKTVPEDFALRLKDKGAEVVRAGEDYEGSVAAAIEDAERTDALHLADGSWPGYTEPPRLVMEGYTVIAEEMRRQFEAGLNWPSHVYLQAGVGGLAAAIAYMIRLNWAIQPRIIVVEPDSAPCLKESVAAGKIMTVDGPESNMGRLDCKTPSMLAFNILKNCADDWVTISDQQALEAVKAAADYGYSTTASGGAGFAACQMDNADLPLVILSERGLEATASS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SCQ5</accession>
    <name>A0A1M5SCQ5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">L-alanine-DL-glutamate epimerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2901</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36314.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902285.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2901"/>
    <dbReference type="EnsemblBacteria" id="SHH36314">
        <property type="protein sequence ID" value="SHH36314"/>
        <property type="gene ID" value="SAMN05444003_2901"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036849">
        <property type="entry name" value="Enolase-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029017">
        <property type="entry name" value="Enolase-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029065">
        <property type="entry name" value="Enolase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013342">
        <property type="entry name" value="Mandelate_racemase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013341">
        <property type="entry name" value="Mandelate_racemase_N_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13378">
        <property type="entry name" value="MR_MLE_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02746">
        <property type="entry name" value="MR_MLE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00922">
        <property type="entry name" value="MR_MLE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51604">
        <property type="entry name" value="SSF51604"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54826">
        <property type="entry name" value="SSF54826"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MR_MLE" evidence="1">
        <location>
            <begin position="144"/>
            <end position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH36314.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="368" mass="39903" checksum="948A0DA426BFD182" modified="2017-03-15" version="1">MKITAITVFQVDLPLEFPYWLSGGRLKFEMLDATFVRIDTNAGLTGWGEGTPWGHTYVPAHGPGIRAGIETMAPFILGLDPRRVLDVERAMDLALPGHLYAKSPIDMACWDIAGQAANLPVADLMGGGARTPRPIASSVGAKTIDETRAVIDRYRQRGYIAHSVKIGGDVERDIARIKDVESLRQPDDIILYDVNRGWTRQQALRVMSAVEELNVMIEQPCESLDDIAAISNKHATPVSVDESLVTLQDAARIARDGLAEVFGIKLNRVGGLTKAARMRDIALAHGIDMFVMATGGSVLADTEALHLAATIPDANCHAVWACQDMLTIDIADGRGPRNIDGHLHLPEEPGLGVHPDENMLGDPVGVYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SD96</accession>
    <name>A0A1M5SD96_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Methyltransferase</fullName>
            <ecNumber evidence="4">2.1.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2907</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the trimethylamine methyltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.-" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36449.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902295.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2907"/>
    <dbReference type="EnsemblBacteria" id="SHH36449">
        <property type="protein sequence ID" value="SHH36449"/>
        <property type="gene ID" value="SAMN05444003_2907"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015948">
        <property type="term" value="P:methanogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.480">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038601">
        <property type="entry name" value="MttB-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010426">
        <property type="entry name" value="MTTB_MeTrfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06253">
        <property type="entry name" value="MTTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037567">
        <property type="entry name" value="MTTB_MeTrfase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4 6" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR037567"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH36449.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="512" mass="55597" checksum="87D7D23E931145D8" modified="2017-03-15" version="1">MTVDTKPRRRGRRGATAAPPSARDTNYRQLKNPFPAMKAFSDDEIANMHETAFRMLEELGMKVLLPEAREYFAKGGAKVDGEMVYIGRDMIEAALASAPKSIDCVAGARHRDFTLELGSLTFQPGAGAPHATDLVRGRRPGTATDYREMTRLTQHFDVFQMISPLTEPQDVATHERHYFTTEAQLTLTDKFPFLFSRGTPQVMDCFEMLRDFRGASDEQFLNTTYCYTIINTNSPRTLDVPMAQGLIDFAKFGQVSIVTPFTLMGAMAPITVAGAITLSHAECLAAITLTQLVNPGAPVCYGTFTSNVDMKSGAPAFGTPTHFQASLAAGQLARHLGLPWRSAAGSASNLNDVQAANENQMGLWGCLMAGATVIIHSAGWLEGGLTVSYEKLITDVEVLNMIAELCAGAKAGTDEIGFANALSEVDPSGHFFATSQTMERYNTEFYEPVVHDYANFGTWTERGAKDATTRATDVWQTILADGTGPQLDDARVGALNDFIEKRKAEGGAPPES</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SDK8</accession>
    <name>A0A1M5SDK8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Sarcosine oxidase subunit delta</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2910</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36525.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902302.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2910"/>
    <dbReference type="EnsemblBacteria" id="SHH36525">
        <property type="protein sequence ID" value="SHH36525"/>
        <property type="gene ID" value="SAMN05444003_2910"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008115">
        <property type="term" value="F:sarcosine oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046653">
        <property type="term" value="P:tetrahydrofolate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2270.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006279">
        <property type="entry name" value="SoxD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038561">
        <property type="entry name" value="SoxD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04267">
        <property type="entry name" value="SoxD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH36525.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="88" mass="10165" checksum="0D6F7BE014BCA15C" modified="2017-03-15" version="1">MQIFTCPFCGPRDEREFHFIAEAGKTRPDTLNQISDEDWAAYLHSHRNEKGHVREIWMHTTCGELFLLERDSVTMEVLGSTALREAGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SIH1</accession>
    <name>A0A1M5SIH1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">NAD kinase</fullName>
            <ecNumber evidence="5">2.7.1.23</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">ATP-dependent NAD kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">nadK</name>
        <name evidence="6" type="ORF">SAMN05444003_2988</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>ATP + NAD(+) = ADP + H(+) + NADP(+)</text>
            <dbReference type="Rhea" id="RHEA:18629"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.23"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the NAD kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.23" evidence="5"/>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38289.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902424.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2988"/>
    <dbReference type="EnsemblBacteria" id="SHH38289">
        <property type="protein sequence ID" value="SHH38289"/>
        <property type="gene ID" value="SAMN05444003_2988"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003951">
        <property type="term" value="F:NAD+ kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019674">
        <property type="term" value="P:NAD metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006741">
        <property type="term" value="P:NADP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.200.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00361">
        <property type="entry name" value="NAD_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017438">
        <property type="entry name" value="ATP-NAD_kinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017437">
        <property type="entry name" value="ATP-NAD_kinase_PpnK-typ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016064">
        <property type="entry name" value="NAD/diacylglycerol_kinase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002504">
        <property type="entry name" value="NADK"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01513">
        <property type="entry name" value="NAD_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111331">
        <property type="entry name" value="SSF111331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 5 6" id="KW-0418">Kinase</keyword>
    <keyword evidence="4 5" id="KW-0520">NAD</keyword>
    <keyword evidence="3 5" id="KW-0521">NADP</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 5" id="KW-0808">Transferase</keyword>
    <feature type="active site" description="Proton acceptor" evidence="5">
        <location>
            <position position="44"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="44"/>
            <end position="45"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="114"/>
            <end position="115"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="144"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="152"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="155"/>
            <end position="160"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00361"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH38289.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="254" mass="27485" checksum="10D40118A52E688E" modified="2017-03-15" version="1">MSAPKIAFVASEVPIAQKAQKALAGRYGDVAPRDADVIVALGGDGFMLQTLHATQDNPAAVYGMNRGTVGFLMNEYSEDDLLERLAEAEEEIINPLRMTALCVDGSMHEALAINEVSLLRAGPQAAKLRITVDGKLRMDELVCDGALVATPAGSTAYNYSAHGPILPIGSDVLALTAMSAFRPRRWRGALLPKRAVVRFDVRNPEKRPVMADADGKSVRDVASVEIRSEPDVAHKILFDPGHGLEERLIREQFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5STH1</accession>
    <name>A0A1M5STH1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3101</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41841.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH41841">
        <property type="protein sequence ID" value="SHH41841"/>
        <property type="gene ID" value="SAMN05444003_3101"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH41841.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="81" mass="8759" checksum="787466E808399BA4" modified="2017-03-15" version="1">MSSAGMMQPCYRALRYAGHCTDCTTDMARSANPQAPRYLSLAQPMPNMGSLSVARPSSAAIGPFMTRLPSGNRSCFKWGKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SU83</accession>
    <name>A0A1M5SU83_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_3118</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
        <text evidence="6">Binds 1 FAD per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 8">Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42101.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902672.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3118"/>
    <dbReference type="EnsemblBacteria" id="SHH42101">
        <property type="protein sequence ID" value="SHH42101"/>
        <property type="gene ID" value="SAMN05444003_3118"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016668">
        <property type="term" value="F:oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045454">
        <property type="term" value="P:cell redox homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016156">
        <property type="entry name" value="FAD/NAD-linked_Rdtase_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001100">
        <property type="entry name" value="Pyr_nuc-diS_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004099">
        <property type="entry name" value="Pyr_nucl-diS_OxRdtase_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012999">
        <property type="entry name" value="Pyr_OxRdtase_I_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02852">
        <property type="entry name" value="Pyr_redox_dim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000350">
        <property type="entry name" value="Mercury_reductase_MerA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55424">
        <property type="entry name" value="SSF55424"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00076">
        <property type="entry name" value="PYRIDINE_REDOX_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6 8" id="KW-0274">FAD</keyword>
    <keyword evidence="2 8" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="6" id="KW-0520">NAD</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="5 8" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="10">
        <location>
            <begin position="7"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="domain" description="Pyr_redox_dim" evidence="9">
        <location>
            <begin position="338"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="52"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="116"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="140"/>
            <end position="142"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="177"/>
            <end position="184"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="200"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="262"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="303"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="disulfide bond" description="Redox-active" evidence="7">
        <location>
            <begin position="43"/>
            <end position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000350-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000350-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH42101.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="472" mass="50322" checksum="0F04028C65A43843" modified="2017-03-15" version="1">MNRIKTDICIIGGGSGGLSIAAGAVQMGAKVVLLEGHKMGGDCLNYGCVPSKALIASAKKAYAMSHGGELGVADAKAKVDYAAAKDHVANVIATIEPHDSVERFEGLGVKVIEEFGRFISKTEVQAGDTIIEARRFVVSTGSAPFVPPIPGLENVTYYTNENIFDLREQPKHLIVIGGGPIGLEMAQAHARLGSKVTVIEGMKALGKDDPELAAIALYNLRAEGIEIVEEAQAEKISGDGKTITVHTPKGDFSGSHLLMAVGRKVNIDKLDLDKGGIAHDRRGLKVGPNLRSVTNKRVYAAGDVAGGLQFTHVAGYHAGVLIRSILFGLPSKQRTDHIPWATYIDPEMAHVGLTEVDARKKYGGNVEVVRFNYDGNDRAIAERKSTGLIKVMVVKGRPVGASIVGHLAGELIGMWAMAIANNMKMSAIANTVLPYPTISEVNKRAAGAYFSPKLFESDRVKSIVGFVQRRLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SUR4</accession>
    <name>A0A1M5SUR4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Putative membrane protein insertion efficiency factor</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3122</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Could be involved in insertion of integral membrane proteins into the membrane.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0161 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42180.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902675.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3122"/>
    <dbReference type="EnsemblBacteria" id="SHH42180">
        <property type="protein sequence ID" value="SHH42180"/>
        <property type="gene ID" value="SAMN05444003_3122"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00386">
        <property type="entry name" value="UPF0161_YidD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002696">
        <property type="entry name" value="Membr_insert_effic_factor"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33383">
        <property type="entry name" value="PTHR33383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01809">
        <property type="entry name" value="YidD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01234">
        <property type="entry name" value="Haemolytic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00278">
        <property type="entry name" value="TIGR00278"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00386"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH42180.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="73" mass="8195" checksum="17BE0EB68B010A91" modified="2017-03-15" version="1">MTPLAYILSRPVVAYRLLFSPWVGHGCRYQPTCSAYSLEAYRKHGGIKGTYLTIRRIARCHPWGGSGIDNVPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SV95</accession>
    <name>A0A1M5SV95_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3139</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42491.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902704.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH42491">
        <property type="protein sequence ID" value="SHH42491"/>
        <property type="gene ID" value="SAMN05444003_3139"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009913794" evidence="1">
        <location>
            <begin position="20"/>
            <end position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH42491.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="166" mass="17741" checksum="79B66ACBDBAEAC9A" modified="2017-03-15" version="1">MTKTPFAFVLTLTATPALAIDPSLVRKWQADGADMASVLAKQMNAQATYLSGQTIMDIDEFGNLTLLSDNMTYAIQAPEMPAMEVSVNGFSEGAMNANDGHNYRAVAAQYSLVGSAEVFGQRMDIPITQADGGWGTSTGIYGCTDTGIAFEANELGTIPRSWTRLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SWF5</accession>
    <name>A0A1M5SWF5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 8">Adenylate kinase</fullName>
            <shortName evidence="6">AK</shortName>
            <ecNumber evidence="6 8">2.7.4.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">ATP-AMP transphosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">ATP:AMP phosphotransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Adenylate monophosphate kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">adk</name>
        <name evidence="9" type="ORF">SAMN05444003_3160</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6 8">
            <text>AMP + ATP = 2 ADP</text>
            <dbReference type="Rhea" id="RHEA:12973"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="6">Purine metabolism; AMP biosynthesis via salvage pathway; AMP from ADP: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6 8">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6 8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="6">Consists of three domains, a large central CORE domain and two small peripheral domains, NMPbind and LID, which undergo movements during catalysis. The LID domain closes over the site of phosphoryl transfer upon ATP binding. Assembling and dissambling the active center during each catalytic cycle provides an effective means to prevent ATP hydrolysis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the adenylate kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.3" evidence="6 8"/>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902738.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3160"/>
    <dbReference type="EnsemblBacteria" id="SHH42834">
        <property type="protein sequence ID" value="SHH42834"/>
        <property type="gene ID" value="SAMN05444003_3160"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00588">
        <property type="reaction ID" value="UER00649"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004017">
        <property type="term" value="F:adenylate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044209">
        <property type="term" value="P:AMP salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01428">
        <property type="entry name" value="ADK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00235">
        <property type="entry name" value="Adenylate_kinase_Adk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006259">
        <property type="entry name" value="Adenyl_kin_sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000850">
        <property type="entry name" value="Adenylat/UMP-CMP_kin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033690">
        <property type="entry name" value="Adenylat_kinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23359">
        <property type="entry name" value="PTHR23359"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00094">
        <property type="entry name" value="ADENYLTKNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01351">
        <property type="entry name" value="adk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00113">
        <property type="entry name" value="ADENYLATE_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 6 7" id="KW-0418">Kinase</keyword>
    <keyword evidence="3 6" id="KW-0545">Nucleotide biosynthesis</keyword>
    <keyword evidence="4 6 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6 7" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="NMP" evidence="6">
        <location>
            <begin position="30"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="10"/>
            <end position="15"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="31"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="36"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="57"/>
            <end position="59"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="85"/>
            <end position="88"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="92"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="127"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="139"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="150"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="178"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007220"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003330"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003331"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH42834.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="192" mass="20384" checksum="6304218E4865D595" modified="2017-03-15" version="1">MNIILLGPPGAGKGTQAGRLVEERNMIQLSTGDMLRAARTSGTEMGKMVAGVMDRGELVTDEIVIGLIREQLEADNDATGFIFDGFPRTLAQADALGELLAEMGQPLDAVIELEVNDEVLVDRIVGRAKEAAAAGQPVRADDNEESLKVRLMAYYKQTSPLIGYYYAKGNLTSVDGLASIDDVAASINGVLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T2R5</accession>
    <name>A0A1M5T2R5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Chromosome partitioning protein, ParB family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3203</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH44900.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902828.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3203"/>
    <dbReference type="EnsemblBacteria" id="SHH44900">
        <property type="protein sequence ID" value="SHH44900"/>
        <property type="gene ID" value="SAMN05444003_3203"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003115">
        <property type="entry name" value="ParB/Sulfiredoxin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036086">
        <property type="entry name" value="ParB/Sulfiredoxin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02195">
        <property type="entry name" value="ParBc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00470">
        <property type="entry name" value="ParB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110849">
        <property type="entry name" value="SSF110849"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ParB" evidence="2">
        <location>
            <begin position="58"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="15"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH44900.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="350" mass="38581" checksum="50513AE5E36387C4" modified="2017-03-15" version="1" fragment="single">FPAGKVEEKERRGPMAAAITENADSLRERQRLEAEIRAENDQLAHEHVRLQSLGLIVDRVPLDQIKMSKITRDRAVAEDAELVELVESIRSVGLSNPILVERGGDGALELVQGYRRIAAFEALMADTDDANAYGAIPARVVNAGDDLETLHRRMVDENLVRKDISFAEMAQLAINYAADPGIELSDPDKAVAVLYKSTGYSKRSYIRAFIKLMDALGSELKFSQDIPRALGLKVVRMLEEVEGCKAALLLDLADLGAARTSEQEVGVLRRYVGALEEDGVPAEPSVGLAEKVEKDTRSKAKVTFQIRRPEGTAKCTAGSGRLEIRLRRDFSTIDRRRLEDAVAAMLNELD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-09-29" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5KYS3</accession>
    <name>A0A1M5KYS3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposase InsO and inactivated derivatives</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0001</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG57917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG57917">
        <property type="protein sequence ID" value="SHG57917"/>
        <property type="gene ID" value="SAMN05444003_0001"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010921">
        <property type="entry name" value="Trp_repressor/repl_initiator"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48295">
        <property type="entry name" value="SSF48295"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="1">
        <location>
            <begin position="132"/>
            <end position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG57917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="326" mass="38081" checksum="A66B9290B583D3D4" modified="2017-03-15" version="1">MRYPASEKLEIIRLVEGSHLPTKRTLDKLGVPRTTFYRWYDRYLAGGPKALEDRSPRPSRVWNRIPEPVRKKVKDLALAESDLSPRELAVRFTDTEKYFVSEASVYRILKSYDLITSPAHVVLSAADEFKDKTTRPNELWQTGFTYLKVIGWGWFYLSTILDDYSRYIIAWKLCTTMKTEDVTDTLDLAMQASGCDQATVLHKPRLLSDNGSSYISGELADWLEDQKMDHIRGAPYHPQTQGKIERWHQTLKNRILLENYYLPGDLRQQIDAFVDHYNHRRYHESLQNLTPADVYFGRGQTILKQRERIKRKTIETRRLLHSKSAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-06-02" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L1X5</accession>
    <name>A0A1M5L1X5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0052</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59027.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG59027">
        <property type="protein sequence ID" value="SHG59027"/>
        <property type="gene ID" value="SAMN05444003_0052"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="25"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="25"/>
            <end position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG59027.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="51" mass="5684" checksum="C60F1C11EC04697F" modified="2017-03-15" version="1">MKTAAVTKSEKPSFPTIRHDLLDRLSEKAEQLTRPEPKSDKKAAPHNGWAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L422</accession>
    <name>A0A1M5L422_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0094</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0094"/>
    <dbReference type="EnsemblBacteria" id="SHG59842">
        <property type="protein sequence ID" value="SHG59842"/>
        <property type="gene ID" value="SAMN05444003_0094"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021265">
        <property type="entry name" value="DUF2842"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11003">
        <property type="entry name" value="DUF2842"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="9"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="41"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG59842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="69" mass="7755" checksum="AD513B264C804A2A" modified="2017-03-15" version="1">MTYKGRKRLSLLILVVGVPAYIMLAVTVMSTAPRFPLVIEFFLYVGLGIGWVFPLKWVFKGIGQPDPDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L6M7</accession>
    <name>A0A1M5L6M7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6">Imidazoleglycerol-phosphate dehydratase</fullName>
            <shortName evidence="5">IGPD</shortName>
            <ecNumber evidence="5 6">4.2.1.19</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">hisB</name>
        <name evidence="7" type="ORF">SAMN05444003_0133</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="5 6">
            <text>D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate = 3-(imidazol-4-yl)-2-oxopropyl phosphate + H2O</text>
            <dbReference type="Rhea" id="RHEA:11040"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:57766"/>
            <dbReference type="ChEBI" id="CHEBI:58278"/>
            <dbReference type="EC" id="4.2.1.19"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 5 6">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 6/9.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5 6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5 6">Belongs to the imidazoleglycerol-phosphate dehydratase family.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.19" evidence="5 6"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60687.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898492.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0133"/>
    <dbReference type="EnsemblBacteria" id="SHG60687">
        <property type="protein sequence ID" value="SHG60687"/>
        <property type="gene ID" value="SAMN05444003_0133"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00011"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004424">
        <property type="term" value="F:imidazoleglycerol-phosphate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07914">
        <property type="entry name" value="IGPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.40">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00076">
        <property type="entry name" value="HisB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038494">
        <property type="entry name" value="IGPD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000807">
        <property type="entry name" value="ImidazoleglycerolP_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020565">
        <property type="entry name" value="ImidazoleglycerP_deHydtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23133">
        <property type="entry name" value="PTHR23133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00475">
        <property type="entry name" value="IGPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00954">
        <property type="entry name" value="IGP_DEHYDRATASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00955">
        <property type="entry name" value="IGP_DEHYDRATASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 5 6" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="4 5 6" id="KW-0456">Lyase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000599"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG60687.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="195" mass="21340" checksum="8DD216EB440D2FD9" modified="2017-03-15" version="1">MRTAKITRKTAETDISVEINLDGTGVYDNQTGVGFFDHMLDQLSRHALIDMTVRADGDLHIDDHHTVEDVGIALGQALTEAMGDKKGIMRYGSCHLAMDDAQVRCALDLSGRPYLICNLELPFGKIGTFDTELVREFFQALSTHGGITLHIDKLHGFNAHHITEAAFKAVARALRDALETDPRKADAIPSTKGAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L815</accession>
    <name>A0A1M5L815_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">CoA_binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0126</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60533.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0126"/>
    <dbReference type="EnsemblBacteria" id="SHG60533">
        <property type="protein sequence ID" value="SHG60533"/>
        <property type="gene ID" value="SAMN05444003_0126"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003781">
        <property type="entry name" value="CoA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13380">
        <property type="entry name" value="CoA_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00881">
        <property type="entry name" value="CoA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CoA_binding" evidence="1">
        <location>
            <begin position="17"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG60533.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="162" mass="18009" checksum="5F5232CA7AB92372" modified="2017-03-15" version="1">MLAGRMTYSDAYLRDILCRTKVIAQVGASANPVRPSFYVARYLRLKGFRVIPVNPGLAGQELGGELVYPDFASIPDAVDMVDIFRRSEVVPSIVKEALARWDELQTVWMQIGIENADATALAEARGVEVIQNRCPKIEYQRLFGELRMGGFNTGVISSRLTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L9X8</accession>
    <name>A0A1M5L9X8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">DNA repair protein RecN</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4 5">Recombination protein N</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_0187</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 5">May be involved in recombinational repair of damaged DNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the RecN family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61934.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898556.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0187"/>
    <dbReference type="EnsemblBacteria" id="SHG61934">
        <property type="protein sequence ID" value="SHG61934"/>
        <property type="gene ID" value="SAMN05444003_0187"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004604">
        <property type="entry name" value="DNA_recomb/repair_RecN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003395">
        <property type="entry name" value="RecF/RecN/SMC_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11059">
        <property type="entry name" value="PTHR11059"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02463">
        <property type="entry name" value="SMC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003128">
        <property type="entry name" value="RecN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00634">
        <property type="entry name" value="recN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-0227">DNA damage</keyword>
    <keyword evidence="5" id="KW-0234">DNA repair</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SMC_N" evidence="7">
        <location>
            <begin position="14"/>
            <end position="504"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="166"/>
            <end position="200"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00021315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00033408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR003128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02463"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG61934.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="549" mass="59212" checksum="A4EF114C59627809" modified="2017-03-15" version="1">MLRGLDIRDMLIIDRLELEFQPGLNALTGETGAGKSILLDSLGFVLGWRGRAELVRSGAEQGEVTAWFDLPVDHPARAVLDEAGIGAEDELILRRVNAKDGRKTAWVNDRRVSGEVLRRLSDVLVELHGQHDDRGLLNPRGHRQLLDEFAGLTEDVEALRGLWRSLAAERLKLEALNANIAAAREEEDFLRHAVAELETLEPQPGEEATLDAQRRLMQAAEKIREDITRAAEALGLQGAEGMLSDASRWLGSVADKAEGQLDDPMAAIERAMVELDAAQSGVVASLDALAFNPSDLEDTEERLFAIRALARKHNVLADDLGEFAAELRSKLAVVDGGSAELSAQERRVEAARIAYVQAAEAVRQKRTAAAKKLDQAMTMELAPLKMERAVFATKLDTSDEGPEGIDDVHFAVATNPGAPAGPLNKIASGGELSRFLLALKVCLTKSSKSGLTMIFDEIDRGVGGATADAVGRRLAELAETGQILVVTHSPQVAALAGHHWLVEKTQSTSETLSSVIPLDASDRIDEIARMLSGDKVTEAAKEAAKALME</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LDB5</accession>
    <name>A0A1M5LDB5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative glutamine amidotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0205</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62373.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898588.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0205"/>
    <dbReference type="EnsemblBacteria" id="SHG62373">
        <property type="protein sequence ID" value="SHG62373"/>
        <property type="gene ID" value="SAMN05444003_0205"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016811">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011697">
        <property type="entry name" value="Peptidase_C26"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044668">
        <property type="entry name" value="PuuD-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43235">
        <property type="entry name" value="PTHR43235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07722">
        <property type="entry name" value="Peptidase_C26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG62373.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="258" mass="27611" checksum="917374DA2A5722DC" modified="2017-03-15" version="1">MTRPVIGIIGNSGLMNDEYPVQASGTLNLDAVAEVCGGMPIIVPASPGYVSVQELMEICDGFVFTGGRPNVHPEEYGEVATEAHGAFDRDRDRIALPLIRECVAVGLPILAICRGFQELNVAMGGSLYPEIRDLPGRDNHRMPPDGTLEEKFAMRHVVTMTEGGPFHRVLGSTEVLTNSLHGQGIKEKGDRIVIDGYAPDGTPEAIYVAGAPGFTLGVQWHPEWQAGSDPVSKPLFEAFGAAVHAWSNAKKVQPAKSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LI60</accession>
    <name>A0A1M5LI60_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0272</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64053.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898705.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0272"/>
    <dbReference type="EnsemblBacteria" id="SHG64053">
        <property type="protein sequence ID" value="SHG64053"/>
        <property type="gene ID" value="SAMN05444003_0272"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG64053.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="242" mass="27436" checksum="DB4BE398054B5F11" modified="2017-03-15" version="1">MINGFKVFDADPYVNKWVSSARRVVETLDVSQRRHGRTWFVGVDALPNNTDGSIRGATLGGAWMDDLSAHPEFDGWHKAQVSIVYDGYPRQDPDESDAAHRFRVKRDAAHMDGLLPEGAVRRRHLREPHAFIVGLPLNNVPSSPLVVWPDSHRVMQTAFSKVFEGVEPCYWGDQDVTDVYQAARREVFERCERVEVSMRPGQAVLLNRHLIHGVAPWEGPNVIEGRQVAYFRPMVANVADWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LJR7</accession>
    <name>A0A1M5LJR7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Protein-disulfide isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0339</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">May be required for disulfide bond formation in some proteins.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the thioredoxin family. DsbA subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65394.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898786.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0339"/>
    <dbReference type="EnsemblBacteria" id="SHG65394">
        <property type="protein sequence ID" value="SHG65394"/>
        <property type="gene ID" value="SAMN05444003_0339"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041205">
        <property type="entry name" value="ScsC_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012336">
        <property type="entry name" value="Thioredoxin-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18312">
        <property type="entry name" value="ScsC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13462">
        <property type="entry name" value="Thioredoxin_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin" evidence="3">
        <location>
            <begin position="9"/>
            <end position="241"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003565"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005791"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG65394.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="241" mass="26700" checksum="8F37DE614F10DE48" modified="2017-03-15" version="1">MRFLRAALIALATPLAAQEMTDAQREAFRAEVRAYLLDNPEVIMEAVGILEAREQQARIDADIKMARANQDALFNDPTSFVGGNPDGDITIVEFMDYRCGFCKRAFPEVQALLENDGNIRYVIKELPILGEQSILASRFALAVRKVAGDEAYKLAHDALMEQRSDISESSLIRLADSLAIDSDTVFAAMTDPEISDVINTNRALAQNLQITGTPTFVFDDQLLRGYVPLDQMTQIIAELRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LK92</accession>
    <name>A0A1M5LK92_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Adenosine 5'-phosphosulfate reductase</fullName>
            <shortName evidence="3">APS reductase</shortName>
            <ecNumber evidence="3">1.8.4.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">5'-adenylylsulfate reductase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">Thioredoxin-dependent 5'-adenylylsulfate reductase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">cysH</name>
        <name evidence="5" type="ORF">SAMN05444003_0307</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the formation of sulfite from adenosine 5'-phosphosulfate (APS) using thioredoxin as an electron donor.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>[thioredoxin]-disulfide + AMP + 2 H(+) + sulfite = [thioredoxin]-dithiol + adenosine 5'-phosphosulfate</text>
            <dbReference type="Rhea" id="RHEA:21976"/>
            <dbReference type="Rhea" id="RHEA-COMP:10698"/>
            <dbReference type="Rhea" id="RHEA-COMP:10700"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17359"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:50058"/>
            <dbReference type="ChEBI" id="CHEBI:58243"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="1.8.4.10"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="3">Binds 1 [4Fe-4S] cluster per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3">Sulfur metabolism; hydrogen sulfide biosynthesis; sulfite from sulfate.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the PAPS reductase family. CysH subfamily.</text>
    </comment>
    <dbReference type="EC" id="1.8.4.10" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64783.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898749.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0307"/>
    <dbReference type="EnsemblBacteria" id="SHG64783">
        <property type="protein sequence ID" value="SHG64783"/>
        <property type="gene ID" value="SAMN05444003_0307"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00070">
        <property type="reaction ID" value="UER00116"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004604">
        <property type="term" value="F:phosphoadenylyl-sulfate reductase (thioredoxin) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019379">
        <property type="term" value="P:sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01713">
        <property type="entry name" value="PAPS_reductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00063">
        <property type="entry name" value="CysH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004511">
        <property type="entry name" value="PAPS/APS_Rdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002500">
        <property type="entry name" value="PAPS_reduct"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01507">
        <property type="entry name" value="PAPS_reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000857">
        <property type="entry name" value="PAPS_reductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00434">
        <property type="entry name" value="cysH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PAPS_reduct" evidence="4">
        <location>
            <begin position="36"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile; cysteine thiosulfonate intermediate" evidence="3">
        <location>
            <position position="223"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="116"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="117"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="197"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="200"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01507"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG64783.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="240" mass="26860" checksum="7D07B7887AF90213" modified="2017-03-15" version="1">MPLKELAERRNSLHRKSDAQTVLRHALADLHIGPVALVSSFGAESVVLLHMISEIDKNTPIIFLDTEMLFEETLQYQKDVSEHLGLTDVRVVKPSRAAVFERDVDGLLHQAEIDACCALRKVEPLENALQEFGGWLTGRKQFQGGQRQTLPLFEKDGRKIKINPLAKWTRDDIAAYMDKHNLPRHPLVAKGYPSIGCMPCTSRVGDHEDSRAGRWRDTAKTECGIHFDGGKATRTKEAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LZ53</accession>
    <name>A0A1M5LZ53_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Yip1 domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0556</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70285.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899101.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0556"/>
    <dbReference type="EnsemblBacteria" id="SHG70285">
        <property type="protein sequence ID" value="SHG70285"/>
        <property type="gene ID" value="SAMN05444003_0556"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006977">
        <property type="entry name" value="Yip1_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04893">
        <property type="entry name" value="Yip1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="36"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="72"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="105"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="135"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="168"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="domain" description="Yip1" evidence="6">
        <location>
            <begin position="14"/>
            <end position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG70285.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="195" mass="21134" checksum="AD5E1DD2CD548B9D" modified="2017-03-15" version="1">MSKERSFVSQLVLQSFTEPRKVAEYLISLDIDRRSLWLLLGLVSILSALVLSAVAAVTPAPEGVQTVSLSPWMAAVFVGFVMLAMVFALHYIGRWLGGTGSLDSTILLISWHQGITVAFQLLQLVLVLISPLLGAFANFAGIVFLFYILLQFIDVLHGYKSLWKSFGAFALSIVAMVIALSLLLPILGLPIAGTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M0N6</accession>
    <name>A0A1M5M0N6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Isoprenyl transferase</fullName>
            <ecNumber evidence="2">2.5.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0582</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="2">Binds 2 magnesium ions per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPP synthase family.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.-" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70818.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899133.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0582"/>
    <dbReference type="EnsemblBacteria" id="SHG70818">
        <property type="protein sequence ID" value="SHG70818"/>
        <property type="gene ID" value="SAMN05444003_0582"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004659">
        <property type="term" value="F:prenyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00475">
        <property type="entry name" value="Cis_IPPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01139">
        <property type="entry name" value="ISPT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001441">
        <property type="entry name" value="UPP_synth-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018520">
        <property type="entry name" value="UPP_synth-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036424">
        <property type="entry name" value="UPP_synth-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10291">
        <property type="entry name" value="PTHR10291"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01255">
        <property type="entry name" value="Prenyltransf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64005">
        <property type="entry name" value="SSF64005"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00055">
        <property type="entry name" value="uppS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01066">
        <property type="entry name" value="UPP_SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="2">
        <location>
            <begin position="18"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="2">
        <location>
            <begin position="62"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="2">
        <location>
            <begin position="191"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="17"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="17"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="22"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="30"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="34"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="66"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="68"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="185"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="204"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG70818.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="239" mass="27321" checksum="3B57EA58C79CEDA5" modified="2017-03-15" version="1">MTKMDKIGPNHVAIIMDGNGRWAQQRGKPRLFGHHAGARRVREIVQACPDYGVKYLTIFAFSTENWKRTQVEVAGLMRLFRRYIEKEARALLEDGVRVRFIGDRIKLDEKLVSLMDNLELLTANNDKVHLTIALNYGGRDEVTRAAKRLAYEVEQGRLSHKDVDAETLSKFLDTHVLPDPDLVIRTSGEARISNFLLWQSAYSEYEFVETLWPDFTAEEFGSVVSAYGTRDRRFGAVLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M1Y1</accession>
    <name>A0A1M5M1Y1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Methyltransferase</fullName>
            <ecNumber evidence="4">2.1.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_0598</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the trimethylamine methyltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.-" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG71200.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899152.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0598"/>
    <dbReference type="EnsemblBacteria" id="SHG71200">
        <property type="protein sequence ID" value="SHG71200"/>
        <property type="gene ID" value="SAMN05444003_0598"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015948">
        <property type="term" value="P:methanogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.480">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038601">
        <property type="entry name" value="MttB-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010426">
        <property type="entry name" value="MTTB_MeTrfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06253">
        <property type="entry name" value="MTTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037567">
        <property type="entry name" value="MTTB_MeTrfase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4 6" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR037567"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG71200.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="516" mass="55856" checksum="20F1243FD882B394" modified="2017-03-15" version="1">MSEAAVRTGRRGRSGGGAARRAARTAVSVETAKYIERNVPNYEVLTEDALAVIEANAETVLAEIGVMFVDNPDALDRWRDAGADVEGERVRIPRGLARQLCSTAPSQYTQCARNPERNVVVGGNNLVLAPVYGPPFVRDAEGGRRYATMEDFEKFVKLGYMSKWLHHSGGTVCEPTDVPVNKRHLDMLLAHMIYSDKPFMGSVTEPSRAQDSVDMCNILFGEEFVQQNTVMTSLININSPLTFDSIMMGALEVFAKNNQASIISPFIVGGAMAPVSIAGTLTQAIAEVMAGVAYSQIIRPGSPVVAGTFVTSIDMNSGAPTFGTPEASHVTYGMGQLVRRLGLPYRSAGGFTGSKLPDAQAAYESANSLNMGLLSGVNFMLHACGWLEGGLVSSFEKFVMDADQLGTLHQFSKGVEMNENGQAMDAIEEVGPGGHYLGCAHTQANFKDAFWRSDLLDYKPFETWEDEGARDTMALATVRVKTLLDTYQQPAIDPEIEAKLRAYVADKKASMPDSFT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M470</accession>
    <name>A0A1M5M470_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TIGR00255 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0629</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72030.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899191.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0629"/>
    <dbReference type="EnsemblBacteria" id="SHG72030">
        <property type="protein sequence ID" value="SHG72030"/>
        <property type="gene ID" value="SAMN05444003_0629"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005229">
        <property type="entry name" value="CHP00255"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013551">
        <property type="entry name" value="DUF1732"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013527">
        <property type="entry name" value="YicC-like_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30636">
        <property type="entry name" value="PTHR30636"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08340">
        <property type="entry name" value="DUF1732"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03755">
        <property type="entry name" value="YicC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00255">
        <property type="entry name" value="TIGR00255"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="YicC_N" evidence="1">
        <location>
            <begin position="2"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="domain" description="DUF1732" evidence="2">
        <location>
            <begin position="212"/>
            <end position="296"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08340"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG72030.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="296" mass="32434" checksum="73CB78CF37AB2389" modified="2017-03-15" version="1">MIQSMTAYASRTGTLDGASWIWEMRGVNARGLDVRLRLPDGLDGLEQAVRASIKENLTRGNITVSLRLTRDDTGSALAVDEAQLDRVLQALEQVQDRAFSLGVTLGQPTAADVLSQRGVVVQNKSEEDDSTLVDALKADLPELMKDFVAMRSAEGDALQNVLLSQVDEIESLTTSAIQAAEARKSHQAASLKDAFNRVMAEAKEVDPTRVEQELAVIAVKQDVTEELDRLTAHISAARDMIADPKPMGRKLDFLAQEFNREANTLCSKAQFKDLTSVGLDLKAVIDQMREQIQNVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M4Y3</accession>
    <name>A0A1M5M4Y3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 10 13">6-phosphogluconate dehydrogenase, decarboxylating</fullName>
            <ecNumber evidence="6 10 13">1.1.1.44</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">SAMN05444003_0641</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 10">Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10 13">
            <text>6-phospho-D-gluconate + NADP(+) = CO2 + D-ribulose 5-phosphate + NADPH</text>
            <dbReference type="Rhea" id="RHEA:10116"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58121"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:58759"/>
            <dbReference type="EC" id="1.1.1.44"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 10 13">Carbohydrate degradation; pentose phosphate pathway; D-ribulose 5-phosphate from D-glucose 6-phosphate (oxidative stage): step 3/3.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5 10">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 10 13">Belongs to the 6-phosphogluconate dehydrogenase family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.44" evidence="6 10 13"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899215.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0641"/>
    <dbReference type="EnsemblBacteria" id="SHG72321">
        <property type="protein sequence ID" value="SHG72321"/>
        <property type="gene ID" value="SAMN05444003_0641"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00115">
        <property type="reaction ID" value="UER00410"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004616">
        <property type="term" value="F:phosphogluconate dehydrogenase (decarboxylating) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019521">
        <property type="term" value="P:D-gluconate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016054">
        <property type="term" value="P:organic acid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006098">
        <property type="term" value="P:pentose-phosphate shunt"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006114">
        <property type="entry name" value="6PGDH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006113">
        <property type="entry name" value="6PGDH_Gnd/GntZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006115">
        <property type="entry name" value="6PGDH_NADP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006184">
        <property type="entry name" value="6PGdom_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006183">
        <property type="entry name" value="Pgluconate_DH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11811">
        <property type="entry name" value="PTHR11811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00393">
        <property type="entry name" value="6PGD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03446">
        <property type="entry name" value="NAD_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000109">
        <property type="entry name" value="6PGD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00076">
        <property type="entry name" value="6PGDHDRGNASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01350">
        <property type="entry name" value="6PGD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00873">
        <property type="entry name" value="gnd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00461">
        <property type="entry name" value="6PGD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 13" id="KW-0311">Gluconate utilization</keyword>
    <keyword evidence="10 13" id="KW-0521">NADP</keyword>
    <keyword evidence="10 13" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9 10 13" id="KW-0570">Pentose shunt</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="6PGD" evidence="14">
        <location>
            <begin position="176"/>
            <end position="463"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="12">
        <location>
            <begin position="126"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="12">
        <location>
            <begin position="183"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="11">
        <location>
            <position position="180"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="11">
        <location>
            <position position="187"/>
        </location>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="104"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="188"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="258"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="285"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="441"/>
        </location>
        <ligand>
            <name>substrate</name>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="447"/>
        </location>
        <ligand>
            <name>substrate</name>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000530"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002526"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004874"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00008419"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00013011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00018193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023064"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRNR" id="PIRNR000109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR000109-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR000109-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU000485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="SMART" id="SM01350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="SHG72321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="464" mass="49386" checksum="EAAE66DE6E7F7318" modified="2017-03-15" version="1">MALCDIGLIGLGTMGSALSLNIAEKGFDIAVWNRRTKVTHAFKAEAGELADKIIATETYEELIAALKSPRAIILMVPAGGPVDDQIAQLRPLLDPEDMIIDAGNANFHNTRTRAASGEPFIGIGVSGGEDGARHGPSIMGGGPKESWDSVAHILEAISAKYEGQPCATWMGPDGAGHFVKAVHNGIEYADMQMIAEVYGIMRDGMGMDAAAIGGVFEAWNKGPLQSYLIEISGEVAKAIDPKTGGAMLDAIVDAAGQKGTGRWTAIEAQHLAAPVPAIEAAVAARNLSSRRDARALGEELFGAAPKHLPHETLSIDTLEQALIAGKILCYAQGFVMLSAASEEFQWSLPLPAIAEVWREGCIIRSAMLNDMSEALTEDPERNLMFAPYFSDHLKKNHGALRQVVAQAALHGLAAPALLSGLSYFDTMRTARGTANMIQGQRDFFGRHSFVHIDGSEGQHGPWAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M544</accession>
    <name>A0A1M5M544_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">D-3-hydroxyaspartate aldolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0643</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the DSD1 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72368.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899219.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0643"/>
    <dbReference type="EnsemblBacteria" id="SHG72368">
        <property type="protein sequence ID" value="SHG72368"/>
        <property type="gene ID" value="SAMN05444003_0643"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.37.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001608">
        <property type="entry name" value="Ala_racemase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026956">
        <property type="entry name" value="D-ser_dehydrat-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042208">
        <property type="entry name" value="D-ser_dehydrat-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029066">
        <property type="entry name" value="PLP-binding_barrel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01168">
        <property type="entry name" value="Ala_racemase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14031">
        <property type="entry name" value="D-ser_dehydrat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01119">
        <property type="entry name" value="D-ser_dehydrat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51419">
        <property type="entry name" value="SSF51419"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="D-ser_dehydrat" evidence="2">
        <location>
            <begin position="283"/>
            <end position="369"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM01119"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG72368.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="386" mass="41957" checksum="C858646A6B746A15" modified="2017-03-15" version="1">MKDMDFEQLDVGYDVPALPGMKADDIQTPALVLDLDALERNIKKMGDYAKAHGMRHRVHGKMHKSVDVAKLQERLGGAVGVCCQKVSEAEVFARGGIKDVLVSNQVRHPRKIDRLAQLPKFGARTIVCVDDIDNVAELSEAAVRHGTQIECFIEMDVGAGRCGVIGAENVLTIAKAIDAAEGLKFTGIQAYQGAMQHMDSYDDRKAKIEAAVAMVKEAIDLLEPVGLKPELVSGGGTGSYYFESNSGVFNELQCGSYAFMDADYGRILDKDGNRIDQAEWENAFFLLTSVMSHAKADKAIVDAGLKAQSVDSGLPVIYGRTDVEYVKCSDEHGVVADPDAVLKVNDKLWLVPGHCDPTANVHDWYVGVRNGVVETVWPVSARGKAY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M6Q3</accession>
    <name>A0A1M5M6Q3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acetyltransferase (GNAT) family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0653</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899235.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0653"/>
    <dbReference type="EnsemblBacteria" id="SHG72609">
        <property type="protein sequence ID" value="SHG72609"/>
        <property type="gene ID" value="SAMN05444003_0653"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13673">
        <property type="entry name" value="Acetyltransf_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="3"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG72609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="188" mass="20896" checksum="2A2A4A92B7F4BAC0" modified="2017-03-15" version="1">MTIRLRPATLDDATDIAALTSIAGEGLPEAVWKGMVHRGETPLDAGARYAARIEGKFSWKNATVAEINGETAGMMISYVTASQPEPLTEDMHPIIRPLTLLENQALETRYIYVLATYEQFRGNGIAHCMLEDAEAHPGKRGVSVITTNRNAQRLAFYEEMGYRDIAQAPVIKTNWNTPNESWHLLLKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M7K6</accession>
    <name>A0A1M5M7K6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">L-lysine exporter family protein LysE/ArgO</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_0659</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72753.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899248.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0659"/>
    <dbReference type="EnsemblBacteria" id="SHG72753">
        <property type="protein sequence ID" value="SHG72753"/>
        <property type="gene ID" value="SAMN05444003_0659"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001123">
        <property type="entry name" value="LeuE-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30086">
        <property type="entry name" value="PTHR30086"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01810">
        <property type="entry name" value="LysE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="38"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="71"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="105"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="146"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="182"/>
            <end position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG72753.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="200" mass="21220" checksum="828DFCE545E9916B" modified="2017-03-15" version="1">MLTAATTGFITAFSLILAIGAQNAFVLRQGLAKQHVFWLCLLCATSDAILIAAGVLGFSAIVAQFPNLPLYMAWGGAAFLFVYGAMRLWAAYLGEYAMQLSGQSAGLWATLATGAAFTWLNPHVYLDTLGLIGAISTDFPAGPERTAFGIGAVTSSFVFFFGLGYGARLLAPVLQSARSWRILDVIIGVVMWALALKLIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M8P8</accession>
    <name>A0A1M5M8P8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">tRNA-specific 2-thiouridylase MnmA</fullName>
            <ecNumber evidence="7">2.8.1.13</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">mnmA</name>
        <name evidence="8" type="ORF">SAMN05444003_0696</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>AH2 + ATP + S-sulfanyl-L-cysteinyl-[protein] + uridine(34) in tRNA = 2-thiouridine(34) in tRNA + A + AMP + diphosphate + H(+) + L-cysteinyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:47032"/>
            <dbReference type="Rhea" id="RHEA-COMP:10131"/>
            <dbReference type="Rhea" id="RHEA-COMP:11726"/>
            <dbReference type="Rhea" id="RHEA-COMP:11727"/>
            <dbReference type="Rhea" id="RHEA-COMP:11728"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61963"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:87170"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.8.1.13"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the MnmA/TRMU family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.8.1.13" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73606.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0696"/>
    <dbReference type="EnsemblBacteria" id="SHG73606">
        <property type="protein sequence ID" value="SHG73606"/>
        <property type="gene ID" value="SAMN05444003_0696"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016783">
        <property type="term" value="F:sulfurtransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006400">
        <property type="term" value="P:tRNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01998">
        <property type="entry name" value="tRNA_Me_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.280">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00144">
        <property type="entry name" value="tRNA_thiouridyl_MnmA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023382">
        <property type="entry name" value="Adenine_a_hdrlase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004506">
        <property type="entry name" value="tRNA-specific_2-thiouridylase"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00420">
        <property type="entry name" value="trmU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 7" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="8" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 7 8" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 7" id="KW-0819">tRNA processing</keyword>
    <keyword evidence="2 7" id="KW-0820">tRNA-binding</keyword>
    <feature type="region of interest" description="Interaction with tRNA" evidence="7">
        <location>
            <begin position="186"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="7">
        <location>
            <position position="140"/>
        </location>
    </feature>
    <feature type="active site" description="Cysteine persulfide intermediate" evidence="7">
        <location>
            <position position="237"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="46"/>
            <end position="53"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="72"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="164"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="site" description="Interaction with tRNA" evidence="7">
        <location>
            <position position="165"/>
        </location>
    </feature>
    <feature type="site" description="Interaction with tRNA" evidence="7">
        <location>
            <position position="379"/>
        </location>
    </feature>
    <feature type="disulfide bond" description="Alternate" evidence="7">
        <location>
            <begin position="140"/>
            <end position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00144"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG73606.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="401" mass="43642" checksum="48BDFC13C9073347" modified="2017-03-15" version="1">MAGLDIGQIFLYFRSNLFWKRLMPLDPALNSLGFAKPPSETRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLYDHGAALAKKGACCAGRDIHDARRVAEEMGFPHYVLDYENTFKEAVIDEFADSYLAGATPVPCIRCNERVKFKDLLETAKDLDADCMATGHYIQRMMGSDGAELHCAADPTKDQSYFLFSTTQEQLDFLRFPLGHHPSKDETRKLAAKYGLSVADKPDSQDICFVPNGNYAAVIEKLRPGAAEPGEIVDIDGNALGTHKGVIHYTIGQRRGLGIGGLSDPLYVVKLDVDAKQVVVGPKELLATRRVPLREINWIGDGGFLSGGEREIAVKVRSTRPPTDAVLRPISDTEAEVELLVAEEGVSPGQACVFYDPKSSRILGGGWIWRGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M8T1</accession>
    <name>A0A1M5M8T1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO</fullName>
            <ecNumber evidence="10">2.1.1.74</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Folate-dependent tRNA (uracil-5-)-methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">Folate-dependent tRNA(M-5-U54)-methyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">trmFO</name>
        <name evidence="12" type="ORF">SAMN05444003_0686</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>(6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + H(+) + NADH + uridine(54) in tRNA = (6S)-5,6,7,8-tetrahydrofolate + 5-methyluridine(54) in tRNA + NAD(+)</text>
            <dbReference type="Rhea" id="RHEA:16873"/>
            <dbReference type="Rhea" id="RHEA-COMP:10167"/>
            <dbReference type="Rhea" id="RHEA-COMP:10193"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:74447"/>
            <dbReference type="EC" id="2.1.1.74"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>(6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + H(+) + NADPH + uridine(54) in tRNA = (6S)-5,6,7,8-tetrahydrofolate + 5-methyluridine(54) in tRNA + NADP(+)</text>
            <dbReference type="Rhea" id="RHEA:62372"/>
            <dbReference type="Rhea" id="RHEA-COMP:10167"/>
            <dbReference type="Rhea" id="RHEA-COMP:10193"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:74447"/>
            <dbReference type="EC" id="2.1.1.74"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 10">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the MnmG family. TrmFO subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.74" evidence="10"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73379.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899295.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0686"/>
    <dbReference type="EnsemblBacteria" id="SHG73379">
        <property type="protein sequence ID" value="SHG73379"/>
        <property type="gene ID" value="SAMN05444003_0686"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030698">
        <property type="term" value="F:5,10-methylenetetrahydrofolate-dependent tRNA (m5U54) methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047151">
        <property type="term" value="F:methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase (FADH2-oxidizing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01037">
        <property type="entry name" value="TrmFO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002218">
        <property type="entry name" value="MnmG-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020595">
        <property type="entry name" value="MnmG-rel_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040131">
        <property type="entry name" value="MnmG_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004417">
        <property type="entry name" value="TrmFO"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11806">
        <property type="entry name" value="PTHR11806"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11806:SF2">
        <property type="entry name" value="PTHR11806:SF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01134">
        <property type="entry name" value="GIDA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00137">
        <property type="entry name" value="gid_trmFO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01281">
        <property type="entry name" value="GIDA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 10" id="KW-0274">FAD</keyword>
    <keyword evidence="4 10" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="3 10 12" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="9 10" id="KW-0520">NAD</keyword>
    <keyword evidence="8 10" id="KW-0521">NADP</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 10 12" id="KW-0808">Transferase</keyword>
    <keyword evidence="6 10" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="GIDA" evidence="11">
        <location>
            <begin position="6"/>
            <end position="374"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="9"/>
            <end position="14"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF01134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG73379.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="451" mass="49215" checksum="B85BE7D73D409ED4" modified="2017-03-15" version="1">MSNILNIIGGGMAGSEAAWQAANSGIDVVIHEMRPKVETFAHRTGNLGEMVCSNSFRSDDHEQNAVGLLHWEMMQANGLIMHTAHKHRLPAGGALAVDRDPFAESVTKALKDHPRISVSYEEITELPSDGNWIIATGPLTSGSLAEAIKNETGAEALAFFDAIAPIVYADSIDMDTAWMQSRYDKGETEEERTAYLNCPMTKDQYEGFIDALLAADKTEFKEGETAKYFDGCLPIEVMAERGRETLRFGPMKPVGLTNANDPNNKPYAVVQLRRDNALGTLFNIVGFQTKMKYGAQKDAFKTIPGLENAEFARLGGIHRNTFINSPTLLDEQMRLHSRPNIRFAGQITGVEGYVESAAMGLLAGRMAVAEMTGQALDPVPHTTAMGALVTHITGGADAKTFQPMNVNFGLFPPIDGVKGGRKGRKDRYKAYTDRAKADWNAWLAQKSLDAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M926</accession>
    <name>A0A1M5M926_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Amino acid ABC transporter ATP-binding protein, PAAT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_0701</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73715.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899320.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0701"/>
    <dbReference type="EnsemblBacteria" id="SHG73715">
        <property type="protein sequence ID" value="SHG73715"/>
        <property type="gene ID" value="SAMN05444003_0701"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015424">
        <property type="term" value="F:ABC-type amino acid transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030679">
        <property type="entry name" value="ABC_ATPase_HisP-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF039085">
        <property type="entry name" value="ABC_ATPase_HisP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="4"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="36"/>
            <end position="43"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG73715.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="242" mass="26996" checksum="6962806F50FA7DA0" modified="2017-03-15" version="1">MTKLSLRDVVKRFGSNTVCDGISLDVAEGEMVCLIGASGAGKSTLLRCINLLEPIEDGEIFLDGEDISIPGLDPMPVRRRIGMVFQSYNLFPHMTAIENVMLAPRRVYKKSRQELRPEVEALFEKFGLADRMEHYPDQLSGGQQQRVAIVRALAMKPEVMLFDEITAALDPQLVGEVLEVLRLLKDSGMTMMLATHEMGFAREAADKVCFLKDGRIVEEGPPSVLFENPTDPQTREFLARVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M9F5</accession>
    <name>A0A1M5M9F5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0695</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899309.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0695"/>
    <dbReference type="EnsemblBacteria" id="SHG73579">
        <property type="protein sequence ID" value="SHG73579"/>
        <property type="gene ID" value="SAMN05444003_0695"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009534">
        <property type="entry name" value="DUF1153"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010921">
        <property type="entry name" value="Trp_repressor/repl_initiator"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06627">
        <property type="entry name" value="DUF1153"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48295">
        <property type="entry name" value="SSF48295"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG73579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="92" mass="10425" checksum="F99DEB87BFBAD433" modified="2017-03-15" version="1">MYLKKIDGPRSVTLPNGTVMTRADLPAQSTRRWVASRKAKVVIAVSSGLIKRSDALEMYSLSEEEYTEWETAVSRHVIDALKATTIQRYRQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MES2</accession>
    <name>A0A1M5MES2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Deoxyribodipyrimidine photo-lyase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0800</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>(6R)-5,10-methylene-5,6,7,8-tetrahydrofolate</name>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the DNA photolyase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75914.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899475.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0800"/>
    <dbReference type="EnsemblBacteria" id="SHG75914">
        <property type="protein sequence ID" value="SHG75914"/>
        <property type="gene ID" value="SAMN05444003_0800"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036134">
        <property type="entry name" value="Crypto/Photolyase_FAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036155">
        <property type="entry name" value="Crypto/Photolyase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005101">
        <property type="entry name" value="Cryptochr/Photolyase_FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002081">
        <property type="entry name" value="Cryptochrome/DNA_photolyase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006050">
        <property type="entry name" value="DNA_photolyase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11455">
        <property type="entry name" value="PTHR11455"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00875">
        <property type="entry name" value="DNA_photolyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03441">
        <property type="entry name" value="FAD_binding_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00147">
        <property type="entry name" value="DNAPHOTLYASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48173">
        <property type="entry name" value="SSF48173"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52425">
        <property type="entry name" value="SSF52425"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51645">
        <property type="entry name" value="PHR_CRY_ALPHA_BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0157">Chromophore</keyword>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="7" id="KW-0456">Lyase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Photolyase/cryptochrome alpha/beta" evidence="6">
        <location>
            <begin position="3"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU004182"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG75914.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="474" mass="53716" checksum="4A51BC8AFF887DC0" modified="2017-03-15" version="1">MTSPIIMWFRRDLRLGDHPALTAACENGRPVIPVFIFDELVDGLGAAPKFRFGLSVGDLARELSSRGSRLVLRKGRAIDVLTDLIRETGATEVHWSRAYDPDAKDRDTTIKAALKEAGISAVSHPGHVLFEPWTVETKTGGFYRVFTPMWKSVRNTEVSACLPEPDLIPAPNAWPDSDDLTLLNMSKDMRRGAEIVHQHCVVGQTAAADRLSEFIETRIARYSDDRDFPGVKATSGLSENLTYGEISPRQCWHAGWEAFRQGHDQAEVFLKELVWREFAYHLVFHTPHIVSRNWREEWDRFPWNTDEAHPHVVAWKQGRTGIPFVDAAMREMYVTGVMHNRSRMIVASYLTKNLMSHWKIGERWFADCLIDWDPASNAMGWQWAAGSGPDAAPYFRVFNPVTQLDKFDRDGVYQKSWIAEGYGQPSDTALSYFDAVPKHWRLSPANTYPSPLVTPEAGRARALEAYATREKVKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MEW8</accession>
    <name>A0A1M5MEW8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Lysine-specific metallo-endopeptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_0794</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899469.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0794"/>
    <dbReference type="EnsemblBacteria" id="SHG75761">
        <property type="protein sequence ID" value="SHG75761"/>
        <property type="gene ID" value="SAMN05444003_0794"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029463">
        <property type="entry name" value="Lys_MEP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024079">
        <property type="entry name" value="MetalloPept_cat_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14521">
        <property type="entry name" value="Aspzincin_M35"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01351">
        <property type="entry name" value="Aspzincin_M35"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012296513" evidence="7">
        <location>
            <begin position="23"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="domain" description="Aspzincin_M35" evidence="8">
        <location>
            <begin position="40"/>
            <end position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM01351"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG75761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="204" mass="22306" checksum="0CEA54D739F489B1" modified="2017-03-15" version="1">MIARVACLAFFAFVVMATSASARMEGCTKDQEATIKAAVADAKRLVTTAAANVGENEIFERWFGKYSPASGEIVRANLKSIASGLRTGAVTARCARVSPQDCEVGTYAYVYGDEAYHINICPAFFRQPLMSFLRPGTERSDNGSKAGTIVHEISHFAVVASTEDHCYSRSLCQDMAERSPARALENADSYQYYVEDVTHFADQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MF92</accession>
    <name>A0A1M5MF92_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cyclopropane-fatty-acyl-phospholipid synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0799</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CFA/CMAS family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75891.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899474.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0799"/>
    <dbReference type="EnsemblBacteria" id="SHG75891">
        <property type="protein sequence ID" value="SHG75891"/>
        <property type="gene ID" value="SAMN05444003_0799"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008610">
        <property type="term" value="P:lipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003333">
        <property type="entry name" value="Mycolic_cyclopropane_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003085">
        <property type="entry name" value="CMAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" evidence="2">
        <location>
            <position position="382"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR003085-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG75891.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="402" mass="46090" checksum="608C367F8622AA16" modified="2017-03-15" version="1">MILTSTEGQSNLPRYFKSVFEKIKNVEKGRLDIVLEDGRRFRIEGPEAGHVAEVHIHHPDVFARTIREGDMGFCDAYLEGQWSTPDLMAFMDMVHDGAEDMYDGFPGQALVQAYEKIRFWLQSNSKRQAKKNISYHYDLGNDFYALWLDETMTYSSAKFETGQESLEKAQTQKYASMVDQMGAQPGDHILEIGCGWGGFAEYAAKERGLKVTCLTISQEQFNYAVKRIEKAGLSDQVTFKMQDYRDETGVYDGIASIEMFEAVGQKYWPAYFNTVRDRLKPGKQATLQIITVGEHRWDAYISRPDFIQKYIFPGGMLPSPSKLREAVQNAGLKVEKSIEFGESYSQTLRRWHETFNEKWDQVAAMGFDDRFKRMWNFYLTSCAGTFHSGNCDVTQITISRPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MFU9</accession>
    <name>A0A1M5MFU9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Membrane glycosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0785</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75573.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899458.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0785"/>
    <dbReference type="EnsemblBacteria" id="SHG75573">
        <property type="protein sequence ID" value="SHG75573"/>
        <property type="gene ID" value="SAMN05444003_0785"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13632">
        <property type="entry name" value="Glyco_trans_2_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="44"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="86"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="389"/>
            <end position="412"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="441"/>
            <end position="466"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="478"/>
            <end position="497"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="544"/>
            <end position="570"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_trans_2-like" evidence="2">
        <location>
            <begin position="218"/>
            <end position="413"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13632"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG75573.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="628" mass="69501" checksum="D73A4EA1C8F71B08" modified="2017-03-15" version="1">MTKYAASHMPERAPLEMRPQTFRQTAAPRVASTKAQRSRWLWRAAAFIPTLIVTIVICVSVTRYLAHGGVSSVEAMAVGLVGLSTVWLFFAATTACLGMVSYAFQTDATKSERNAPPQNIALLMPIYNETPHDVFGNASAMLRELQGTTGDRFSLFMLSDTNDPEIAKLEDRAFSILSAEFQSEASVYYRRRAENTDKKVGNISDWIENCGDAYDAMLILDADSLMSGRAIRQLADALASDPDAGLIQSRPVLIGAETLFGRVQQFSNAVYGWLVAEGIASWSQGEGNYWGHNAIIRTRAFADSARLPYLKSIRGNNQLFLSHDFIEAAMLRRAGWRVRLLPRVGGSYEETPVTLIDYALRDRRWCLGNMQHLRILAARGFHPISRLHLLQGALAFLMSPAWLAALVLWSFVGMTDEGTTTYFSAANPQTPIWPEAMTYDIGWFFLLFIYGMLLLPKLIGATLYGLRARTRAAYGSGLTYIGTICVELFLSVLYAPVMMVQHTIATLRAFVGWSFDWAPQNRNGRSYGWKETLRFHWVETLSGLLILGGVASGQVSLLILPIAISLAGAVPLSMLSGMRVSNATARMLRLDTPVSLREPAIVSSARAERAKFRAWVNEQPEPVSIAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MGS3</accession>
    <name>A0A1M5MGS3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0817</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76332.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899499.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG76332">
        <property type="protein sequence ID" value="SHG76332"/>
        <property type="gene ID" value="SAMN05444003_0817"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="40"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG76332.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="124" mass="14039" checksum="E48800DCCEC8ABFC" modified="2017-03-15" version="1">MSLPPKVITLDVADTARAKKFVTSYKSSITRKERLSESSLLLHCLGWACFAILPWIFTAFIFWFVDERLEENAQIEELRSSQTDNKIAEIEAKILAAQEQIETGLSPALLLSVEHKFGRARNVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MH57</accession>
    <name>A0A1M5MH57_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 12">Phosphoribosylformylglycinamidine cyclo-ligase</fullName>
            <ecNumber evidence="3 12">6.3.3.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10 12">AIR synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11 12">AIRS</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9 12">Phosphoribosyl-aminoimidazole synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="primary">purM</name>
        <name evidence="15" type="ORF">SAMN05444003_0825</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8 12">
            <text>2-formamido-N(1)-(5-O-phospho-beta-D-ribosyl)acetamidine + ATP = 5-amino-1-(5-phospho-beta-D-ribosyl)imidazole + ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:23032"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:137981"/>
            <dbReference type="ChEBI" id="CHEBI:147287"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.3.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 12">Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole from N(2)-formyl-N(1)-(5-phospho-D-ribosyl)glycinamide: step 2/2.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="12">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 12">Belongs to the AIR synthase family.</text>
    </comment>
    <dbReference type="EC" id="6.3.3.1" evidence="3 12"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76537.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899513.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0825"/>
    <dbReference type="EnsemblBacteria" id="SHG76537">
        <property type="protein sequence ID" value="SHG76537"/>
        <property type="gene ID" value="SAMN05444003_0825"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00129"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004641">
        <property type="term" value="F:phosphoribosylformylglycinamidine cyclo-ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02196">
        <property type="entry name" value="PurM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.650.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00741">
        <property type="entry name" value="AIRS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010918">
        <property type="entry name" value="PurM-like_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036676">
        <property type="entry name" value="PurM-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016188">
        <property type="entry name" value="PurM-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036921">
        <property type="entry name" value="PurM-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004733">
        <property type="entry name" value="PurM_cligase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10520">
        <property type="entry name" value="PTHR10520"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00586">
        <property type="entry name" value="AIRS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02769">
        <property type="entry name" value="AIRS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55326">
        <property type="entry name" value="SSF55326"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56042">
        <property type="entry name" value="SSF56042"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00878">
        <property type="entry name" value="purM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 12" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="12" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 12 15" id="KW-0436">Ligase</keyword>
    <keyword evidence="6 12" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AIRS" evidence="13">
        <location>
            <begin position="52"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="domain" description="AIRS_C" evidence="14">
        <location>
            <begin position="176"/>
            <end position="338"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004686"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010280"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00020367"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00031908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00032931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00033093"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF00586"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF02769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="SHG76537.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="346" mass="35897" checksum="83B9BAC59D8B5EA7" modified="2017-03-15" version="1">MTQNGLTYADAGVDIDAGNTLVERIKPAAKKTARSGVMAGLGGFGALFDLKDAGYSDPILVAATDGVGTKLRIAIDTGNVDTIGIDLVAMCVNDLVCQGAEPLFFLDYFATGKLDLDDATRIIEGIAAGCEMSGCALIGGETAEMPGMYEAGDFDLAGFSVGAMERGADLPRNVAAGDVLLGLGSNGVHSNGYSLVRHIVDVSGLSWSDDAPFTDETLGAALLAPTRLYVKQALAAIRRGGVHGLAHITGGGLTENLPRVLPEGCGASIKLDAWYLPPVFKWLAQVGGMAEAEMLKTFNAGIGMVLVVEAAKADDLTELLTEMGEAVYRIGEVTSEPNMTYSGTLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MJM8</accession>
    <name>A0A1M5MJM8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Glucose-6-phosphate 1-dehydrogenase</fullName>
            <shortName evidence="5">G6PD</shortName>
            <ecNumber evidence="5">1.1.1.49</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">zwf</name>
        <name evidence="9" type="ORF">SAMN05444003_0868</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the oxidation of glucose 6-phosphate to 6-phosphogluconolactone.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>D-glucose 6-phosphate + NADP(+) = 6-phospho-D-glucono-1,5-lactone + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:15841"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:57955"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:61548"/>
            <dbReference type="EC" id="1.1.1.49"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="5">Carbohydrate degradation; pentose phosphate pathway; D-ribulose 5-phosphate from D-glucose 6-phosphate (oxidative stage): step 1/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the glucose-6-phosphate dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.49" evidence="5"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77560.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899573.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0868"/>
    <dbReference type="EnsemblBacteria" id="SHG77560">
        <property type="protein sequence ID" value="SHG77560"/>
        <property type="gene ID" value="SAMN05444003_0868"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00115">
        <property type="reaction ID" value="UER00408"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004345">
        <property type="term" value="F:glucose-6-phosphate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006006">
        <property type="term" value="P:glucose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006098">
        <property type="term" value="P:pentose-phosphate shunt"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00966">
        <property type="entry name" value="G6PD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001282">
        <property type="entry name" value="G6P_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019796">
        <property type="entry name" value="G6P_DH_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022675">
        <property type="entry name" value="G6P_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022674">
        <property type="entry name" value="G6P_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23429">
        <property type="entry name" value="PTHR23429"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02781">
        <property type="entry name" value="G6PD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00479">
        <property type="entry name" value="G6PD_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000110">
        <property type="entry name" value="G6PD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00079">
        <property type="entry name" value="G6PDHDRGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00871">
        <property type="entry name" value="zwf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00069">
        <property type="entry name" value="G6P_DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="1 5" id="KW-0313">Glucose metabolism</keyword>
    <keyword evidence="2 5" id="KW-0521">NADP</keyword>
    <keyword evidence="3 5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="G6PD_N" evidence="7">
        <location>
            <begin position="14"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="domain" description="G6PD_C" evidence="8">
        <location>
            <begin position="189"/>
            <end position="480"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="5">
        <location>
            <position position="240"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="17"/>
            <end position="24"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="51"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="148"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="178"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 6">
        <location>
            <position position="182"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="216"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="235"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="331"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022526"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG77560.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="484" mass="54844" checksum="FD8C2E19179467D3" modified="2017-03-15" version="1">MVARVIPVEPFDLVIFGGTGDLARRKILPGLFRRFLSGQMPEDSRIIGAARSDIDSAGYRVMIKEAIAEFGGEEKSETKAIAKFLDRLEYVPVDARGEGGWSELAALVRSDVIRAFYFSVGPGLFGDLAERLHSYKIADRDSRIVVEKPFGRDLASAQELNETLAEHFKEDQIYRIDHYLGKETVQNLMAVRFGNVLFEPLWNNHYVDHIQITVAETVDVGGRGAYYDKSGAMRDMVQNHLMQLLCLIAMEPPSQFGADAVRDEKLKVIRALEPVEPHHIVRGQYEAGEDSKSYREHAENPRSFTESFIAMKCHISNWRWAGVPFYMRTGKAMSERVSEITVVFKDLGHSIFEEDDKRHRNILSIRLQPNEGMDLQVTIKEPGPGGMRLIDVPLDMTFAEALGDEAEDVPDAYERLIMDVIRGNQTLFMRGDEVEAAWKWTDPIIQGWEARNDVPKTYEPGSSGPEDAMLLIHRDGRKWREIKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MLZ8</accession>
    <name>A0A1M5MLZ8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Endolytic murein transglycosylase</fullName>
            <ecNumber evidence="7">4.2.2.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Peptidoglycan polymerization terminase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">mltG</name>
        <name evidence="8" type="ORF">SAMN05444003_0899</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the transglycosylase MltG family.</text>
    </comment>
    <dbReference type="EC" id="4.2.2.-" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78266.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899610.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0899"/>
    <dbReference type="EnsemblBacteria" id="SHG78266">
        <property type="protein sequence ID" value="SHG78266"/>
        <property type="gene ID" value="SAMN05444003_0899"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008932">
        <property type="term" value="F:lytic endotransglycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd08010">
        <property type="entry name" value="MltG_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02065">
        <property type="entry name" value="MltG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003770">
        <property type="entry name" value="MLTG-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30518">
        <property type="entry name" value="PTHR30518"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02618">
        <property type="entry name" value="YceG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00247">
        <property type="entry name" value="TIGR00247"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="1 7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="5 7" id="KW-0456">Lyase</keyword>
    <keyword evidence="4 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="site" description="Important for catalytic activity" evidence="7">
        <location>
            <position position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG78266.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="384" mass="41314" checksum="BC635C8D80457321" modified="2017-03-15" version="1">MIRHIASNAITFLIVALFLLAGVIAWGGNTYRAEGPLETAICLQVPSGSNFRDVRDDLTAEGAISQPWLFMAGADYSDKTNQLKAGSFLIEDGASMAEIVDAITGSGVSTCGTEIVYRIGVTRSEVQVRELDPATNRYGEVASFNPLEEEAPAEYLEAKEGQDTRYRIAVAEGVTSWQIANSLNAIDVLDGEIAEIPAEGSLAPDSYEFRPGDEASEIIAEMEGRQETILADAWANRADGVPLENPEEALILASIVEKETGVPEERGQVASVFTNRLNEGMRLQTDPTVIYGITRGQGVLGRGLRQSELRGNTPWNTYVIDGLPPTPIANPGRASIEAALNPDSTDFIFFVADGTGGHAFATNLADHNRNVAAWRAIEAERANN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MMH6</accession>
    <name>A0A1M5MMH6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0910</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78508.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899627.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0910"/>
    <dbReference type="EnsemblBacteria" id="SHG78508">
        <property type="protein sequence ID" value="SHG78508"/>
        <property type="gene ID" value="SAMN05444003_0910"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012883750" evidence="1">
        <location>
            <begin position="21"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG78508.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="158" mass="17117" checksum="62BE88C61CFC05F4" modified="2017-03-15" version="1">MRLLIAAALAVFGFSGAAHACPDFRLQAVEAYQAAGSQLRQPKFFNVVAGGDNYIWDCPQIRPGTDQGAGYFTSAPDFSFNLNGMGGLRLVISAISECDSALLINTASAGWYYDDDDNGNLDPKIILTRPANGRIDIWMGTYDGSFCNAQLRMETFAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MR22</accession>
    <name>A0A1M5MR22_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acetyltransferase (GNAT) domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0966</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79657.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899712.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0966"/>
    <dbReference type="EnsemblBacteria" id="SHG79657">
        <property type="protein sequence ID" value="SHG79657"/>
        <property type="gene ID" value="SAMN05444003_0966"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13302">
        <property type="entry name" value="Acetyltransf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="43"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13302"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG79657.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="180" mass="19638" checksum="8D355B3A2A3E3888" modified="2017-03-15" version="1">MFGTDKFKVDFTTARLRVQSWNSGADGSSWSDIEVTGLRRLLTPAVLRHLPPSMHLTDFDSEIQGWVGERLDESNLLKVSFEQRLVGLVILAVETTKSRRPNVHIGYLLAEDTWGQGLASELIVGLVEALSPLAPVRLVGGVERGNSASARVLEKAGFACDAQVPMDGVDTYFLDIPETG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MS27</accession>
    <name>A0A1M5MS27_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Type III pantothenate kinase</fullName>
            <ecNumber evidence="6">2.7.1.33</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">PanK-III</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Pantothenic acid kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">coaX</name>
        <name evidence="7" type="ORF">SAMN05444003_0988</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>(R)-pantothenate + ATP = (R)-4'-phosphopantothenate + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:16373"/>
            <dbReference type="ChEBI" id="CHEBI:10986"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29032"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.33"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>NH4(+)</name>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
        </cofactor>
        <cofactor evidence="6">
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </cofactor>
        <text evidence="6">A monovalent cation. Ammonium or potassium.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 6">Cofactor biosynthesis; coenzyme A biosynthesis; CoA from (R)-pantothenate: step 1/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the type III pantothenate kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.33" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80098.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899731.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0988"/>
    <dbReference type="EnsemblBacteria" id="SHG80098">
        <property type="protein sequence ID" value="SHG80098"/>
        <property type="gene ID" value="SAMN05444003_0988"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00241">
        <property type="reaction ID" value="UER00352"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004594">
        <property type="term" value="F:pantothenate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015937">
        <property type="term" value="P:coenzyme A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01274">
        <property type="entry name" value="Pantothen_kinase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004619">
        <property type="entry name" value="Type_III_PanK"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34265">
        <property type="entry name" value="PTHR34265"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03309">
        <property type="entry name" value="Pan_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00671">
        <property type="entry name" value="baf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 6" id="KW-0173">Coenzyme A biosynthesis</keyword>
    <keyword evidence="4 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 7" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0630">Potassium</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="107"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="6">
        <location>
            <position position="109"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="6"/>
            <end position="13"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="129"/>
        </location>
        <ligand>
            <name>a monovalent cation</name>
            <dbReference type="ChEBI" id="CHEBI:60242"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="132"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="184"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022993"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG80098.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="257" mass="27993" checksum="4EB50E858F4C2F8A" modified="2017-03-15" version="1">MLLAIDCGNTNTVFSIWNGEEFIAQWRTATEWQRTADQYYVWLSTLMKIQNIDVEIDEVIVSSTVPRVVFNLRVLSDRYFNTRPLVVGKPECALPAPPRVDEGTQVGPDRLVNAAGAFDRHGGDLIVVDFGTATTFDVVASDGAYVGGVIAPGVNLSLEALHAAAAALPHVDISKPQKVVGTNTVECMQSGVFWGYIGLVREICDRIKAERGVPMKVISTGGLAPLFQQSATLFDAFDEDLTIHGLTVIHKFNKDLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MTS9</accession>
    <name>A0A1M5MTS9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="10">3-methylcrotonyl-CoA carboxylase alpha subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_1021</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>biotin</name>
            <dbReference type="ChEBI" id="CHEBI:57586"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80774.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1021"/>
    <dbReference type="EnsemblBacteria" id="SHG80774">
        <property type="protein sequence ID" value="SHG80774"/>
        <property type="gene ID" value="SAMN05444003_1021"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005481">
        <property type="entry name" value="BC-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001882">
        <property type="entry name" value="Biotin_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011764">
        <property type="entry name" value="Biotin_carboxylation_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005482">
        <property type="entry name" value="Biotin_COase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000089">
        <property type="entry name" value="Biotin_lipoyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005479">
        <property type="entry name" value="CbamoylP_synth_lsu-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011054">
        <property type="entry name" value="Rudment_hybrid_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011053">
        <property type="entry name" value="Single_hybrid_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02785">
        <property type="entry name" value="Biotin_carb_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00289">
        <property type="entry name" value="Biotin_carb_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00364">
        <property type="entry name" value="Biotin_lipoyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02786">
        <property type="entry name" value="CPSase_L_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00878">
        <property type="entry name" value="Biotin_carb_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51230">
        <property type="entry name" value="SSF51230"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51246">
        <property type="entry name" value="SSF51246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50979">
        <property type="entry name" value="BC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00188">
        <property type="entry name" value="BIOTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50968">
        <property type="entry name" value="BIOTINYL_LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00867">
        <property type="entry name" value="CPSASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0092">Biotin</keyword>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="3 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Biotin carboxylation" evidence="9">
        <location>
            <begin position="3"/>
            <end position="450"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-grasp" evidence="8">
        <location>
            <begin position="122"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="domain" description="Lipoyl-binding" evidence="7">
        <location>
            <begin position="556"/>
            <end position="641"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023267"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG80774.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="644" mass="68566" checksum="BAD9A03EF1984154" modified="2017-03-15" version="1">MMMFNKILIANRGEIACRVIQTAKKMGVKTVAVYSDVDADALHVRQADEAVRLGPAPVAESYLRCDLIVQAALDRGAEAIHPGYGFLSENPDFVEMVEAAGLTFIGPSAEAIRAMGLKDAAKTLMEKAGVPVVPGYHGAEQGADHLARQAELIGYPVLIKAVAGGGGKGMRLVEAAGDFAESLQSAQSEAQTAFGNADVLIEKYITAPRHIEVQVFGDGTDAVHLYERDCSLQRRHQKVIEEAPAPGMTEEVRAAMGNAAVRAATAIGYKGAGTVEFIVDGSDGLKPDGFWFMEMNTRLQVEHPVTEAITGVDLVEWQLRVCSGEALPMEQADIPLNGHSFEARLYAEDVPAGFLPAIGHLDHLAFPTDARIDSGVETGSEVSPWYDPMIAKITVHDSDRSSALARLSSALEGIEIAGTVTNVAFLQRLAKDADFAAARIDTDLIARKGEALVAGVTPTAEALALAALTASGIDLEASMIGFSLWGDYEQEVVLLHCEDSYTVRYRCSSGVFFAQTPLGDAELTDVSGSLWCTGNKLPRALRHSSMVTVFGAEPITFEIPDPLARTATSAAENDVKAPMPGLIQAVAVQAGQTVAEGDRLLVLEAMKMEHVLKAPRDGIVQSVNVSEGDQVVAGFLMVTLEPQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MUA7</accession>
    <name>A0A1M5MUA7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Isovaleryl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">SAMN05444003_1026</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 7 8">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80876.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899766.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1026"/>
    <dbReference type="EnsemblBacteria" id="SHG80876">
        <property type="protein sequence ID" value="SHG80876"/>
        <property type="gene ID" value="SAMN05444003_1026"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003995">
        <property type="term" value="F:acyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901565">
        <property type="term" value="P:organonitrogen compound catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
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            <begin position="12"/>
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            <end position="372"/>
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    <sequence length="387" mass="41965" checksum="262F26A808AD8735" modified="2017-03-15" version="1">MFLSSMTFDLGEETNALRDMVHAWAQDRVKPLAAQIDKDNEFPSELWKEMGELGLLGVTVGEDYGGAGMSYLAHTVAIEEIARASASVSLSYGAHSNLCVNQIKLNGSEEQKQNYLPRLISGEHVGALAMSEAGAGSDVVSMSLRAEKRNDHYRLNGNKYWITNGPDADTLVVYAKSDPDAGSKGITAFLIEKEMTGFSTSVHFDKLGMRGSNTAELIFEDVEVPFENVLGEEGKGVRVLMSGLDYERVVLAGIGLGIMAACLDEVMPYISTRKQFGEPIGNFQLMQGKIADMYTAMNSARAYVYEVARACDAGTVTRQDAAACCLYASEEAMKQAHQAVQAMGGAGFLNDAPVARIFRDAKLMEIGAGTSEIRRMLVGRELMGTMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MWQ4</accession>
    <name>A0A1M5MWQ4_9RHOB</name>
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        <submittedName>
            <fullName evidence="1">DNA polymerase III, delta prime subunit</fullName>
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        <name evidence="1" type="ORF">SAMN05444003_1069</name>
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                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="1 2">DSM 28715</strain>
        </source>
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    </dbReference>
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            <dbReference type="EMBL" id="SHG81770.1"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="372" mass="39812" checksum="5A700F2A990F736D" modified="2017-03-15" version="1">MSDDLPEPDRIEGAPHPRETERLLGQDAAVAGFLDAYNSKRLHSGWMITGPRGVGKATLAWKIATFLLAEAPDDGLFGEAAPATDLSVPPDHPDAKLVQSGAHPRLFVVRRPVDEKTSKLKADITVDAVRGLKGFFQLSAADGGRRVVIVDAADELNRNAANAILKELEEPPARTTILLIAHQPSRLLPTIRSRCRELRCGPLEAQSLAAALEQAGQHTDAPDALLSLCGGSAGDAIRLMNHDGLQLYAELIQLFDGLPRITRPAALKLAESCAGRGAEVRFAMTLDLIDHFLARAARIGLMGQPDSQGAPGEARLLARLSPHDQAARAWADLQQSLGARSRHGKAVNLDPAALILDMVFKIEETALSIAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MZM6</accession>
    <name>A0A1M5MZM6_9RHOB</name>
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        <submittedName>
            <fullName evidence="14">NAD-dependent formate dehydrogenase flavoprotein subunit</fullName>
        </submittedName>
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        <name evidence="14" type="ORF">SAMN05444003_1108</name>
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        <name type="scientific">Cognatiyoonia sediminum</name>
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                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="14 15">DSM 28715</strain>
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        <cofactor evidence="1">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
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            <name>[4Fe-4S] cluster</name>
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        <text evidence="3">Belongs to the complex I 51 kDa subunit family.</text>
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        <property type="component" value="Unassembled WGS sequence"/>
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        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
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        <property type="project" value="InterPro"/>
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        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
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        <property type="term" value="F:NADH dehydrogenase (ubiquinone) activity"/>
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        <property type="project" value="InterPro"/>
    </dbReference>
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    </dbReference>
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    </dbReference>
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        <property type="entry name" value="NADH-UbQ_OxRdtase_51kDa_CS"/>
    </dbReference>
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        <property type="entry name" value="Nuo51_FMN-bd"/>
    </dbReference>
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        <property type="entry name" value="Nuo51_FMN-bd_sf"/>
    </dbReference>
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        <property type="entry name" value="NuoE_N"/>
    </dbReference>
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        <property type="entry name" value="Nuop51_4Fe4S-bd"/>
    </dbReference>
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        <property type="entry name" value="Nuop51_4Fe4S-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019554">
        <property type="entry name" value="Soluble_ligand-bd"/>
    </dbReference>
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        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01512">
        <property type="entry name" value="Complex1_51K"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10589">
        <property type="entry name" value="NADH_4Fe-4S"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SLBB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00928">
        <property type="entry name" value="NADH_4Fe-4S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140490">
        <property type="entry name" value="SSF140490"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF142019">
        <property type="entry name" value="SSF142019"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00644">
        <property type="entry name" value="COMPLEX1_51K_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00645">
        <property type="entry name" value="COMPLEX1_51K_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="6" id="KW-0288">FMN</keyword>
    <keyword evidence="9" id="KW-0408">Iron</keyword>
    <keyword evidence="10" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-0520">NAD</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="NADH_4Fe-4S" evidence="13">
        <location>
            <begin position="485"/>
            <end position="530"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007523"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="SMART" id="SM00928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="SHG82655.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="561" mass="61372" checksum="72A0545A5F06E9A5" modified="2017-03-15" version="1">MALDERKGVWKSGKGKGRHQPKGRQVEDQAWDEVRALLRGRSRDRDLLIEFLHLIQDEYGCLSAAHMRALAEEMRISQAEVYEVATFYAHFDVVKEGEPKPPALTIRVCDSLSCELAGAQELKKALEDGLDANAVRVVRAPCMGRCDTAPTLELGHNHIDFATPEKVKAAIAADDTHAHIPDYQALDAYVADGGYVALKDLRAVGNWEDVQAKIKESGLRGLGGAGFPSGTKWGFVRANEGPRYLAVNGDEGEPGTFKDRYYLERTPHLFLEGMLIAAWAVEAEKAFIYMRDEYPAVLHILAEEIKALEAAGIVEQGYIDLRRGAGAYICGEESAMIESIEGKRGIPRHRPPFVAQVGIFNRPTLVHNVETLYWVAKVCREGPECLNTTEKNERKGLRSYSVSGRVKNPGVYLLPAGSTITDIIEACGGMAEVHTFKAYQPGGPSSGLLPASIDDVPLDFDTLQPLGTFIGSAAVVVLSDKDSAKAAALNMLRFFEDESCGQCTPCRVGCEKAVKLMDKDRWDQELLGELCTAMADASICGLGQAAPNPIRSTIKYFPDEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MZQ7</accession>
    <name>A0A1M5MZQ7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7">Phosphoribosylamine--glycine ligase</fullName>
            <ecNumber evidence="2 7">6.3.4.13</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">GARS</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Glycinamide ribonucleotide synthetase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Phosphoribosylglycinamide synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">purD</name>
        <name evidence="10" type="ORF">SAMN05444003_1112</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>5-phospho-beta-D-ribosylamine + ATP + glycine = ADP + H(+) + N(1)-(5-phospho-beta-D-ribosyl)glycinamide + phosphate</text>
            <dbReference type="Rhea" id="RHEA:17453"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:58681"/>
            <dbReference type="ChEBI" id="CHEBI:143788"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.4.13"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 7">Purine metabolism; IMP biosynthesis via de novo pathway; N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-alpha-D-ribose 1-diphosphate: step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the GARS family.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.13" evidence="2 7"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899838.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1112"/>
    <dbReference type="EnsemblBacteria" id="SHG82761">
        <property type="protein sequence ID" value="SHG82761"/>
        <property type="gene ID" value="SAMN05444003_1112"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00125"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004637">
        <property type="term" value="F:phosphoribosylamine-glycine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009113">
        <property type="term" value="P:purine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.600.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00138">
        <property type="entry name" value="GARS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020561">
        <property type="entry name" value="PRibGlycinamid_synth_ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000115">
        <property type="entry name" value="PRibGlycinamide_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020560">
        <property type="entry name" value="PRibGlycinamide_synth_C-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037123">
        <property type="entry name" value="PRibGlycinamide_synth_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020559">
        <property type="entry name" value="PRibGlycinamide_synth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020562">
        <property type="entry name" value="PRibGlycinamide_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011054">
        <property type="entry name" value="Rudment_hybrid_motif"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43472">
        <property type="entry name" value="PTHR43472"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01071">
        <property type="entry name" value="GARS_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02843">
        <property type="entry name" value="GARS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02844">
        <property type="entry name" value="GARS_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01210">
        <property type="entry name" value="GARS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51246">
        <property type="entry name" value="SSF51246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00877">
        <property type="entry name" value="purD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00184">
        <property type="entry name" value="GARS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 7 10" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 7" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-grasp" evidence="9">
        <location>
            <begin position="107"/>
            <end position="312"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013255"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00138"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG82761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="420" mass="43897" checksum="1D68FB93519FEE7B" modified="2017-03-15" version="1">MNILILGSGGREHALAWAVKQNPKCDKLIVAPGNAGIAALAECSSVDILNGDAVAEFAAANSIDFVIVGPEAPLAAGVADRLRDAGISVFGPSKEAAKLEASKAFTKEICDAANAPTAAYARFTDAAAAKAYIQAQGAPIVVKADGLAAGKGVIVAMTDEEALAAIDDMFDGNFGEAGAEVVIEEFMDGEEASFFCLVDGTTILPIGTAQDHKRVGDGDTGPNTGGMGAYSPAPVMTADVTQKTIDEIVRPTMQVMADRVTPFQGVLFVGLMIKDGQPRLVEYNVRFGDPECQCLMMRLGAQVLDLMQACAEGRLVDVSANWADDHALTVVLAANGYPGGYEKGSVIKGLETLPEDSQNAVYHAGTTKLDGQITATGGRVLAVTARGATLKDAHARAYAMVDEIDWPEGFCRRDIGWRAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MZZ4</accession>
    <name>A0A1M5MZZ4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">SCP-2 sterol transfer family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1118</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82906.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899844.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1118"/>
    <dbReference type="EnsemblBacteria" id="SHG82906">
        <property type="protein sequence ID" value="SHG82906"/>
        <property type="gene ID" value="SAMN05444003_1118"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1050.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003033">
        <property type="entry name" value="SCP2_sterol-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036527">
        <property type="entry name" value="SCP2_sterol-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02036">
        <property type="entry name" value="SCP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55718">
        <property type="entry name" value="SSF55718"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SCP2" evidence="1">
        <location>
            <begin position="17"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02036"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG82906.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="96" mass="9719" checksum="0EAFC9AE393D9D7A" modified="2017-03-15" version="1">MSDVITAAVEALNEKMAGAGFDGTAKFDIEGEGSILIDENGATASDADADVTLTASAETFQAILEGEQNPTAAFMTGQLKVDGDMGMAMKLSGVLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N4U4</accession>
    <name>A0A1M5N4U4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Nucleoside-diphosphate-sugar epimerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1189</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the NAD(P)-dependent epimerase/dehydratase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84580.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1189"/>
    <dbReference type="EnsemblBacteria" id="SHG84580">
        <property type="protein sequence ID" value="SHG84580"/>
        <property type="gene ID" value="SAMN05444003_1189"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001509">
        <property type="entry name" value="Epimerase_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01370">
        <property type="entry name" value="Epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Epimerase" evidence="2">
        <location>
            <begin position="3"/>
            <end position="219"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007637"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG84580.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="292" mass="31901" checksum="2119A80BBD7349AA" modified="2017-03-15" version="1">MFTGGSGKAGRHAITVLQNQGHRVLNLDKVPSGLEVTELLVDLTDSGQVIGAMSQFTDFPELDEGTGVPRYDAVVHFAAVPRVMIGTDGACFEANVLSTYNVIEAAVKLGIPKVIFASSETTYGVCFADGEVKPEYVPIDEDHPTVPHDSYAMSKVCNEVTAKSFQARTGMDIYGLRINNVIEPHEYAEMFPPFMEDAALRRRNIFAYIDARDLGHMVDCCLKTDGLGYQVFNVANEDMSVGISSDEVKAAFYQGVREAVPMGPDETFYSIKKAKELVGFAPKHSWRDVLGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N6J5</accession>
    <name>A0A1M5N6J5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Propionyl-CoA carboxylase</fullName>
            <ecNumber evidence="4">6.4.1.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">SAMN05444003_1216</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + hydrogencarbonate + propanoyl-CoA = (S)-methylmalonyl-CoA + ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:23720"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17544"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57327"/>
            <dbReference type="ChEBI" id="CHEBI:57392"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.4.1.3"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="1">
            <dbReference type="Rhea" id="RHEA:23721"/>
        </physiologicalReaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>biotin</name>
            <dbReference type="ChEBI" id="CHEBI:57586"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Metabolic intermediate metabolism; propanoyl-CoA degradation; succinyl-CoA from propanoyl-CoA: step 1/3.</text>
    </comment>
    <dbReference type="EC" id="6.4.1.3" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85184.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899929.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1216"/>
    <dbReference type="EnsemblBacteria" id="SHG85184">
        <property type="protein sequence ID" value="SHG85184"/>
        <property type="gene ID" value="SAMN05444003_1216"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00945">
        <property type="reaction ID" value="UER00908"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004658">
        <property type="term" value="F:propionyl-CoA carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016042">
        <property type="term" value="P:lipid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005481">
        <property type="entry name" value="BC-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001882">
        <property type="entry name" value="Biotin_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011764">
        <property type="entry name" value="Biotin_carboxylation_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005482">
        <property type="entry name" value="Biotin_COase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000089">
        <property type="entry name" value="Biotin_lipoyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005479">
        <property type="entry name" value="CbamoylP_synth_lsu-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041265">
        <property type="entry name" value="PCC_BT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011054">
        <property type="entry name" value="Rudment_hybrid_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011053">
        <property type="entry name" value="Single_hybrid_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02785">
        <property type="entry name" value="Biotin_carb_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00289">
        <property type="entry name" value="Biotin_carb_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00364">
        <property type="entry name" value="Biotin_lipoyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02786">
        <property type="entry name" value="CPSase_L_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18140">
        <property type="entry name" value="PCC_BT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00878">
        <property type="entry name" value="Biotin_carb_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51230">
        <property type="entry name" value="SSF51230"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51246">
        <property type="entry name" value="SSF51246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50979">
        <property type="entry name" value="BC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00188">
        <property type="entry name" value="BIOTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50968">
        <property type="entry name" value="BIOTINYL_LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00866">
        <property type="entry name" value="CPSASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00867">
        <property type="entry name" value="CPSASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10" id="KW-0092">Biotin</keyword>
    <keyword evidence="5" id="KW-0436">Ligase</keyword>
    <keyword evidence="9" id="KW-0442">Lipid degradation</keyword>
    <keyword evidence="9" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Biotin carboxylation" evidence="14">
        <location>
            <begin position="1"/>
            <end position="471"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-grasp" evidence="13">
        <location>
            <begin position="120"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="domain" description="Lipoyl-binding" evidence="12">
        <location>
            <begin position="606"/>
            <end position="685"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005060"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022963"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023267"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS50979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="SHG85184.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="685" mass="74957" checksum="B7BAF178ADEC3C0E" modified="2017-03-15" version="1">MFKKILIANRGEIACRVIKTAKKMGIQTVAIYSDADRNALHVKMADEAVHIGPPPANQSYIVIDKVMDAIRQTGAEAVHPGYGFLSENAKFAEALEAEGVAFIGPPKGAIEAMGDKITSKKIAQDAKVSTVPGYMGLIEDADEAVKISNDIGYPVMIKASAGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQVLCDKHGNGVFLHERECSIQRRNQKVIEEAPSPFLDEATRKAMGDQSVALAKAVGYSSAGTVEFIVDGDKNFYFLEMNTRLQVEHPVTELITGVDLVEQMIRVAAGEELPMQQSDLTINGWAMESRLYAEDPYRNFLPSIGRLTRYRPPAEVAGGPMLENGKWNTPDGKAGATSDRHAVRNDTGVYEGGEISMFYDPMIAKLCTWGRDRAEAIEEMRLALDGFEVEGIGHNLPFLAAVYDHEKFTSGNMTTAFIEEEYPEGFDGVELPDDDIKRIAAATSAMHRVAEIRRTRVTGRMDNHERHVGADWVVTLQGQSHDVTIGADKAGATVAIGDDTYRVESDWTPGQPLARLDVDGTPLVLKVGKIPGGFHVRYRGADLKVHVRSPRQAELAKLMPEKLPPDTSKMLLCPMPGLIVKVDVEVGDEVQEGQALCTVEAMKMENILRAERKGIVSKINAGAGDSLAVDDVIMEFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N7M6</accession>
    <name>A0A1M5N7M6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">HTH-type transcriptional regulator BetI</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">betI</name>
        <name evidence="7" type="ORF">SAMN05444003_1228</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Repressor involved in choline regulation of the bet genes.</text>
    </comment>
    <comment type="function">
        <text evidence="3">Repressor involved in the biosynthesis of the osmoprotectant glycine betaine. It represses transcription of the choline transporter BetT and the genes of BetAB involved in the synthesis of glycine betaine.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 4">Amine and polyamine biosynthesis; betaine biosynthesis via choline pathway [regulation].</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85508.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899938.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1228"/>
    <dbReference type="EnsemblBacteria" id="SHG85508">
        <property type="protein sequence ID" value="SHG85508"/>
        <property type="gene ID" value="SAMN05444003_1228"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00529"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019285">
        <property type="term" value="P:glycine betaine biosynthetic process from choline"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00768">
        <property type="entry name" value="HTH_type_BetI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039538">
        <property type="entry name" value="BetI_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017757">
        <property type="entry name" value="Tscrpt_rep_BetI"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13977">
        <property type="entry name" value="TetR_C_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03384">
        <property type="entry name" value="betaine_BetI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0678">Repressor</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="4" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="6">
        <location>
            <begin position="8"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="4 5">
        <location>
            <begin position="31"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004719"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00024936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG85508.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="189" mass="20591" checksum="4E5B9BF2A3AD6104" modified="2017-03-15" version="1">MPKVGMEPIRRAALVEATIATIGETGSLDVTVSQIAKRAGMSSALAHHYFGGKDQIFLAAMRQILRDYSAEVRKELAKTTSHDQRAEAIIRANFADSCFDPSAVSAWMTFYGQAQTNAEALRLLTLYQRRLRSNLIQALRGRVAEPEIGAELLAALIDGLYIRVALTTPDENAEAKALAMLAQLTGDAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N7N2</accession>
    <name>A0A1M5N7N2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Choline-sulfatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_1227</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="PTM">
        <text evidence="3">The conversion to 3-oxoalanine (also known as C-formylglycine, FGly), of a serine or cysteine residue in prokaryotes and of a cysteine residue in eukaryotes, is critical for catalytic activity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the sulfatase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85487.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899937.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1227"/>
    <dbReference type="EnsemblBacteria" id="SHG85487">
        <property type="protein sequence ID" value="SHG85487"/>
        <property type="gene ID" value="SAMN05444003_1227"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008484">
        <property type="term" value="F:sulfuric ester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd16032">
        <property type="entry name" value="choline-sulfatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017785">
        <property type="entry name" value="Choline-sulfatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025863">
        <property type="entry name" value="Choline_sulf_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024607">
        <property type="entry name" value="Sulfatase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000917">
        <property type="entry name" value="Sulfatase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12411">
        <property type="entry name" value="Choline_sulf_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00884">
        <property type="entry name" value="Sulfatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53649">
        <property type="entry name" value="SSF53649"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03417">
        <property type="entry name" value="chol_sulfatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00149">
        <property type="entry name" value="SULFATASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sulfatase" evidence="4">
        <location>
            <begin position="4"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="domain" description="Choline_sulf_C" evidence="5">
        <location>
            <begin position="447"/>
            <end position="498"/>
        </location>
    </feature>
    <feature type="modified residue" description="3-oxoalanine (Cys)" evidence="3">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008779"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR600917-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF12411"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG85487.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="502" mass="57197" checksum="1E44CC50D251F779" modified="2017-03-15" version="1">MSKPNILIIMVDQLNGTLFPDGPAEWLHAPNLKALAEESTRFKNCYTASPLCAPGRASFMSGQLPSRTGVYDNAAEFASSIPTYAHHLRRAGYQTCLSGKMHFVGPDQLHGYEERLTTDIYPPDFGWTPDYRKPGERIDWWYHNMGSVTGAGVAEITNQMEYDDEVAYHATRKLYDLSRGHDERPWCLTVSFTHPHDPYVARKKYWDLYEDCEHLMPAVGPIPYEDQDAHSKRILDANDHENFEISEEQIRRARQAYFANITYLDDKVGELLNTLKATRQEATILFVSDHGDMLGDRGLWFKMSFYEGSARVPMMICAPDMEPGLVETPVSNIDVCPTLCDLAGIDMSEVMPWTDGESIVPLGQGGSRDTPVAMEYAAEASYAPLVSLRYGKWKFNMCALDPDQLYDMEADPNELSNLAEEPEHQGTRNTLKAKAEARWNLDQFDAAVRHSQAGRWVVYEALRNGSYFPWDYQPLQKASERYMRNHMDLNVLEENQRFPRGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NAT6</accession>
    <name>A0A1M5NAT6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1293</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86726.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899996.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG86726">
        <property type="protein sequence ID" value="SHG86726"/>
        <property type="gene ID" value="SAMN05444003_1293"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG86726.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="112" mass="12150" checksum="D2C17C05F86E00D7" modified="2017-03-15" version="1">MNFNTNDARLDQKASSIDTYSLVNDDINGGKSRGFALLTPLLTSPYSALALMGFLLGSNIQVLLPTVLGPELTEEMTYNGMTLADFSVEMGLPIDHPYLVALFEQLCMSDVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NBG1</accession>
    <name>A0A1M5NBG1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 10">Adenine phosphoribosyltransferase</fullName>
            <shortName evidence="10">APRT</shortName>
            <ecNumber evidence="5 10">2.4.2.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">apt</name>
        <name evidence="12" type="ORF">SAMN05444003_1300</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>AMP + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + adenine</text>
            <dbReference type="Rhea" id="RHEA:16609"/>
            <dbReference type="ChEBI" id="CHEBI:16708"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.4.2.7"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 10">Purine metabolism; AMP biosynthesis via salvage pathway; AMP from adenine: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 10">Belongs to the purine/pyrimidine phosphoribosyltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.7" evidence="5 10"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86837.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900003.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1300"/>
    <dbReference type="EnsemblBacteria" id="SHG86837">
        <property type="protein sequence ID" value="SHG86837"/>
        <property type="gene ID" value="SAMN05444003_1300"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00588">
        <property type="reaction ID" value="UER00646"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003999">
        <property type="term" value="F:adenine phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006168">
        <property type="term" value="P:adenine salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044209">
        <property type="term" value="P:AMP salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006166">
        <property type="term" value="P:purine ribonucleoside salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00004">
        <property type="entry name" value="Aden_phosphoribosyltr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005764">
        <property type="entry name" value="Ade_phspho_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00156">
        <property type="entry name" value="Pribosyltran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01090">
        <property type="entry name" value="apt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 10 12" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="9 10" id="KW-0660">Purine salvage</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 10 12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pribosyltran" evidence="11">
        <location>
            <begin position="46"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000868"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004659"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00008391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG86837.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="176" mass="19332" checksum="12FCA7CB043C90B5" modified="2017-03-15" version="1">MKTVKDYIRTIPDFPHEGIMFRDVTTLFADPRGFRMAIDQLLHPYAGQPIDRVVGLEARGFILGGAIAHQLSLGFVPIRKKGKLPGKTIEQDYQLEYGEAIMEVHDDALQPGERVLLVDDLLATGGTAEAGIKLIERIGASVMGCAFIIDLPELGGRKKLEDMGMNVHILCEFEGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NFC5</accession>
    <name>A0A1M5NFC5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1380</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900072.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1380"/>
    <dbReference type="EnsemblBacteria" id="SHG88175">
        <property type="protein sequence ID" value="SHG88175"/>
        <property type="gene ID" value="SAMN05444003_1380"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG88175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="242" mass="25143" checksum="D8749BE827BF15B3" modified="2017-03-15" version="1">MTDLNGKTALVTGAAGGIGSAIVQRLQENGTTVVGADRVETPADHTILGDLTEPAYCDTLPQKAADILGGLDIVVNNAGIITRGPITEATDDDYMRTMAINVEAPFRICRAAIPLMSNAGGGAIVNVASCWGVHPGPNHPLYVMSKAAVASLTQCLGMDHAHQNIRVNAVCPNEVNTDMLRSGFAARGFDPKSAIADLNASVPLGRIAEPEDIADVVLFLASDQARYLCGALIEANGGKPVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NGZ3</accession>
    <name>A0A1M5NGZ3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Predicted oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1415</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900101.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1415"/>
    <dbReference type="EnsemblBacteria" id="SHG88834">
        <property type="protein sequence ID" value="SHG88834"/>
        <property type="gene ID" value="SAMN05444003_1415"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020471">
        <property type="entry name" value="AKR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018170">
        <property type="entry name" value="Aldo/ket_reductase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023210">
        <property type="entry name" value="NADP_OxRdtase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036812">
        <property type="entry name" value="NADP_OxRdtase_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00248">
        <property type="entry name" value="Aldo_ket_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00069">
        <property type="entry name" value="ALDKETRDTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51430">
        <property type="entry name" value="SSF51430"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00062">
        <property type="entry name" value="ALDOKETO_REDUCTASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldo_ket_red" evidence="1">
        <location>
            <begin position="16"/>
            <end position="296"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG88834.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="311" mass="33852" checksum="BDCC461AF2BD6123" modified="2017-03-15" version="1">MKRPLQTVSGKPTSVLIFGAMQFGGTADQSASEALFHDALEAGINHFDTAFAYTGGASETILGELIKNNREDIYLATKVGYVGGSGSENIKQQFSISQKRLDTDYVDLLYMHRFDAETPLEETFETLAELQSEGKVRHIGVSNYAAWQVMKAQAVAAQFETHIDALQPMYSLVKRQAEVELLPMCSDQGILPATYSPLGGGLLTGKYASGGKGRLSEDHRYAARYGPDWMHAAAQGLTEIANELAVSPACLAVSWVLRSYYNANPIVSARNVDQLRPSLTAAKFDMSDELYSRLSALTPTPAPATDRLEEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NHN3</accession>
    <name>A0A1M5NHN3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glutathione S-transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1427</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89084.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900112.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1427"/>
    <dbReference type="EnsemblBacteria" id="SHG89084">
        <property type="protein sequence ID" value="SHG89084"/>
        <property type="gene ID" value="SAMN05444003_1427"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006749">
        <property type="term" value="P:glutathione metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036282">
        <property type="entry name" value="Glutathione-S-Trfase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004045">
        <property type="entry name" value="Glutathione_S-Trfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13409">
        <property type="entry name" value="GST_N_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47616">
        <property type="entry name" value="SSF47616"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50404">
        <property type="entry name" value="GST_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GST N-terminal" evidence="1">
        <location>
            <begin position="1"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG89084.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="229" mass="25597" checksum="593722F0D75F9FC6" modified="2017-03-15" version="1">MTYELYIGDRSFSSWSYRGWLMLEKFDLPYTTKLVGLYAGTMADEMTHLAPAKTVPAMVTPEGHVLTDSLAMGETLAERHPDAGLWPADPAARALARSITAEIHSSFMPLRDACPNMIYCTWDGFEPSEAVLQDIKRIEELWALARSRHGTDGPWLYGAYSLADVFYAPVAFRMTTYKLPISEASQVYVNAHLADPAFAIWKAEADKESYDPFPYDLGLTRQPWPSSAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NI08</accession>
    <name>A0A1M5NI08_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Glutathione synthetase</fullName>
            <ecNumber evidence="10">6.3.2.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">GSH synthetase</fullName>
            <shortName evidence="10">GSH-S</shortName>
            <shortName evidence="10">GSHase</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">Glutathione synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">gshB</name>
        <name evidence="13" type="ORF">SAMN05444003_1429</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + glutathione + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13557"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:57925"/>
            <dbReference type="ChEBI" id="CHEBI:58173"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="10">Sulfur metabolism; glutathione biosynthesis; glutathione from L-cysteine and L-glutamate: step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the prokaryotic GSH synthase family.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.3" evidence="10"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89122.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900114.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1429"/>
    <dbReference type="EnsemblBacteria" id="SHG89122">
        <property type="protein sequence ID" value="SHG89122"/>
        <property type="gene ID" value="SAMN05444003_1429"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00142">
        <property type="reaction ID" value="UER00210"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004363">
        <property type="term" value="F:glutathione synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00162">
        <property type="entry name" value="GSH_S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006284">
        <property type="entry name" value="Glut_synth_pro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004218">
        <property type="entry name" value="GSHS_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004215">
        <property type="entry name" value="GSHS_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21621:SF4">
        <property type="entry name" value="PTHR21621:SF4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02955">
        <property type="entry name" value="GSH-S_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02951">
        <property type="entry name" value="GSH-S_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01380">
        <property type="entry name" value="glut_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 10 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 10" id="KW-0317">Glutathione biosynthesis</keyword>
    <keyword evidence="3 10" id="KW-0436">Ligase</keyword>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="9" id="KW-0464">Manganese</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 10 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-grasp" evidence="12">
        <location>
            <begin position="125"/>
            <end position="309"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022684"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00162"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHG89122.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="313" mass="35266" checksum="DD87CC62B411BE5F" modified="2017-03-15" version="1">MSLKVAIQMDPIGPIDINADSSFRIVEEAQARGHELFYYTPDKLSYRDGHVLARGWPLTVRRVEGDHFELGAEQEVDLSDWDVVWLRQDPPFDMSYITTTHLLDMIHPETLVVNDPFWVRNYPEKLLVLSFQELTPPTMIARDLETLKTFREDHGDVILKPLYGNGGAGVFKLSQSDSNLASLHELFSGINREPLIMQKFLPDVSKGDKRVILIDGEPVGAINRVPAAGETRSNMHVGGRPEKVELTERDREICAAIGPLLREKGQIFVGIDVIGDWLTEINVTSPTGIQELERFDGTNVAEKIWQAIEARRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NMR6</accession>
    <name>A0A1M5NMR6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Aromatic ring-opening dioxygenase, catalytic subunit, LigB family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_1503</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the DODA-type extradiol aromatic ring-opening dioxygenase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90797.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900178.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1503"/>
    <dbReference type="EnsemblBacteria" id="SHG90797">
        <property type="protein sequence ID" value="SHG90797"/>
        <property type="gene ID" value="SAMN05444003_1503"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008198">
        <property type="term" value="F:ferrous iron binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016701">
        <property type="term" value="F:oxidoreductase activity, acting on single donors with incorporation of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006725">
        <property type="term" value="P:cellular aromatic compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07363">
        <property type="entry name" value="45_DOPA_Dioxygenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014436">
        <property type="entry name" value="Extradiol_dOase_DODA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004183">
        <property type="entry name" value="Xdiol_dOase_suB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02900">
        <property type="entry name" value="LigB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006157">
        <property type="entry name" value="Doxgns_DODA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="LigB" evidence="5">
        <location>
            <begin position="8"/>
            <end position="263"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007581"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG90797.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="264" mass="28934" checksum="2516790797C679AF" modified="2017-03-15" version="1">MTKMPTFYISHGGGPWPWVPQLRAIFKNLEASFVQMEEDLPERPKAVVMISGHWEADQVRVMSSDAPTMEYDYSGFPPETYQIRYGAPGDPALAERIIGLLAGAGISATPDPKQGYDHGTFVPMQIMYPDADVPLIQVSMLSSYDPAKHFEIGRALAPLRDEGVLIIGSGLSYHNMSKMNPAAKVPSAGFDAWLGETLAKAPEARTADLLNWESAPHARECHVKEDHWVPIYVAVGAAEQATATLVYHETDLLGGITASSYRFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NPG7</accession>
    <name>A0A1M5NPG7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Carbon-monoxide dehydrogenase medium subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1530</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91422.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900204.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1530"/>
    <dbReference type="EnsemblBacteria" id="SHG91422">
        <property type="protein sequence ID" value="SHG91422"/>
        <property type="gene ID" value="SAMN05444003_1530"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.43.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005107">
        <property type="entry name" value="CO_DH_flav_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036683">
        <property type="entry name" value="CO_DH_flav_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016166">
        <property type="entry name" value="FAD-bd_PCMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016167">
        <property type="entry name" value="FAD-bd_PCMH_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002346">
        <property type="entry name" value="Mopterin_DH_FAD-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03450">
        <property type="entry name" value="CO_deh_flav_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00941">
        <property type="entry name" value="FAD_binding_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01092">
        <property type="entry name" value="CO_deh_flav_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55447">
        <property type="entry name" value="SSF55447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51387">
        <property type="entry name" value="FAD_PCMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0274">FAD</keyword>
    <keyword evidence="1" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding PCMH-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG91422.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="286" mass="29146" checksum="3A9E7ABEDCCD4088" modified="2017-03-15" version="1">MRYERPQTIEDATALMAGAEANAFVLAGGTDLLVRMQSDAFEADLIVDIKAISGFDAITQTEDGFVIGAAVPSAALSEDAALVAAWPGVVEAANLIGSTQIQGRCTIVGNLCNASPAADSVPALVAADARAQIAGPAGTREVAIADVPTGPGKVSLSKGEIIEAVLLPKPEPRTADAYLRFIPRTEMDIAVVGAAVNLSLGDDGTISAARVALGAVAPKVLLVEEAAEALIGSNLDEAALEALAVACSNASNPIDDKRGTVEYRKEVAGVLARRAAQTAYARAGEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NQF5</accession>
    <name>A0A1M5NQF5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1541</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91675.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG91675">
        <property type="protein sequence ID" value="SHG91675"/>
        <property type="gene ID" value="SAMN05444003_1541"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG91675.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="116" mass="13320" checksum="6AED7CB288A40747" modified="2017-03-15" version="1">MIHMLSSFDLKPAQDPDVFQADYAEFVEDLITAGMIVSAGPLGKRVADTPMDTDDDRDHSWFSTMSFRDRAQLDAAYAYIEARQNPSTKSHIRMYRRITNSIFLCWEDQPPEKDTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NQR5</accession>
    <name>A0A1M5NQR5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Sensor protein QseC</fullName>
            <ecNumber evidence="4">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">SAMN05444003_1547</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cell inner membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91817.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900216.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1547"/>
    <dbReference type="EnsemblBacteria" id="SHG91817">
        <property type="protein sequence ID" value="SHG91817"/>
        <property type="gene ID" value="SAMN05444003_1547"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013727">
        <property type="entry name" value="2CSK_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08521">
        <property type="entry name" value="2CSK_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="9 15" id="KW-0418">Kinase</keyword>
    <keyword evidence="11 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <keyword evidence="8 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10 12" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="15"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="168"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="14">
        <location>
            <begin position="188"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="13">
        <location>
            <begin position="247"/>
            <end position="455"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00017234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="SHG91817.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="455" mass="49332" checksum="6AD9A2C2BB47A1BA" modified="2017-03-15" version="1">MQTDAVVSGSLRNRLVLILIGGAAVLAIFLFFAVRSYAVQVAQRGQDNILLASVTSMLDAAAFRDGVAEVDIPYAAFSMLNTPADDRVFYAIYQDDTFLSGYNDLGLLGENQGGQPSFQTRDYRDTSVREVTASRTLIGADQRTEIQIALAQTQDALADTLDQISRNAALLGLGFFALAVALSIWATQATISPLSRLTNSVTRRGPQDLSPFTKPVPQEMAPLVTSLNSLMGRLDQSLSQSEDFIAEAAHRVRTPLATVRSYAEATLLRVNKEENREAMRSMVKAIDESSRAAGQLLDHAMITFRADHLEREELDLVDLVRDLILRLTPVADMKDLTLDLRGEDTVTYAGDPILLQNALRNMIDNAMKYSPADGAIEISVRSEPVVAVTVSDQGPGFPLDEIETLTARFTRGRNADNTIGSGLGLTIAQDVATAHGGEITLRNREEGGACVILSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NU42</accession>
    <name>A0A1M5NU42_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1594</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93030.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1594"/>
    <dbReference type="EnsemblBacteria" id="SHG93030">
        <property type="protein sequence ID" value="SHG93030"/>
        <property type="gene ID" value="SAMN05444003_1594"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018666">
        <property type="entry name" value="DUF2125"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09898">
        <property type="entry name" value="DUF2125"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG93030.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="330" mass="35465" checksum="7A27984E42EA897D" modified="2017-03-15" version="1">MRNLTIFVLVLAALYSGYWFVGSRAVENGAQAAIADLQNQGWIVEIEDVSTRGFPSRFDTTATDILLASPGDGFSYRAPFLQAFALSYAPNSVIAAFPNEQKVRLGLQTIDVASEGLKASAKVEASTSAELEDLTLESGPIQLSSDFGWNTGASKLISAVRQTSGVENTYDVYFDVDELMLPDAINQMIGSEAGLPASFDTIELDLRTKLDKPLDRFVAEQNAEPPRPETIELRRLTANWGDATIEGRGDLEIGAEGTPEGRITLNVRSWDKLISALVSLGLIQEGIAPTVQNVADTMAQGGDTLSVPISFQNGFMSVGPLPLGPAPKFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NXS4</accession>
    <name>A0A1M5NXS4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TRAP transporter, 4TM/12TM fusion protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1655</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG94384.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900313.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1655"/>
    <dbReference type="EnsemblBacteria" id="SHG94384">
        <property type="protein sequence ID" value="SHG94384"/>
        <property type="gene ID" value="SAMN05444003_1655"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010656">
        <property type="entry name" value="DctM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021814">
        <property type="entry name" value="DUF3394"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011853">
        <property type="entry name" value="TRAP_DctM-Dct_fused"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06808">
        <property type="entry name" value="DctM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11874">
        <property type="entry name" value="DUF3394"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02123">
        <property type="entry name" value="TRAP_fused"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="32"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="70"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="98"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="131"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="196"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="326"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="364"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="397"/>
            <end position="416"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="443"/>
            <end position="459"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="465"/>
            <end position="482"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="517"/>
            <end position="543"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="555"/>
            <end position="573"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="580"/>
            <end position="604"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="610"/>
            <end position="633"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="645"/>
            <end position="663"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="675"/>
            <end position="698"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="703"/>
            <end position="721"/>
        </location>
    </feature>
    <feature type="domain" description="DctM" evidence="2">
        <location>
            <begin position="140"/>
            <end position="670"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF06808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG94384.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="872" mass="93259" checksum="CD19A97BDBFEAC78" modified="2017-03-15" version="1">MSTNEIRALSEAELQELVAASDSGARSPAGPVGVFIAAVALSWSIFQVLLASPVAPYLLPGDLINNSRQIHLAFAMFLAAMTYPLFKSSPRDHIPFYDWALGIAGAFLALYGYFFYDKIVANGGLADTTDAYFALAGLILLFISAYRVLGPVMVILAVVFLSYVFFGSSEAVPDQIRWAGASLRKAMSHMWITSEGVFGIALGVSTKFVFLFVLFGALLDKAGAGNYFIKMAFGALGHLRGGPAKAAVVGSAATGLISGSSIANVVTTGTFTIPLMKRVGFSAEKAGSVEVASSVNGQIMPPVMGAAAFLMVEYVGISYVEVITHAFLPAIISYIALVYIVHLEAVKNNMPTIGNKVVNLFRTILGMFGFFAGFALLCYATQYPVSWIVSLFPEGSGWLLSVLLGLVYVALVYFAAQTPDLEPDDPNAEVVELPDIAKIYRSGLYYLLPIILLVYFLMIERKSPGLSAFWATFLLFGILLTQKTLKAFFRGKENSISRLKDGLIDLKDGMIDGARNMIGIALATATAGIIVGTVSLTGIGQVMADFVEFLSGGNLILMLIFVAILSLILGMGLPTTANYIVVSSLMVGVVVELGAQSGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSGGDAIRTGFTAFFYSLRTVALPFVFIFNTDLLLIDVTWTEGIIVFIVATIGILIFTAATMGWFLTRNRIWETIAMLLIAFALFRPGFFMNQIQPPFEDIAPADFVETLGAAEPGSQLRTVISGPDFDTLAVKDVTVPLTVPEGDSAEARLETLGIMLVPNGDIQQLDEPMFGTELSDTLSSFDFYGDDPVQISSVQAASDQMPKQLVFIPALLLLGLIALLQSRRAGRSQAGEEGAPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PJR7</accession>
    <name>A0A1M5PJR7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1678</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH01917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900500.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1678"/>
    <dbReference type="EnsemblBacteria" id="SHH01917">
        <property type="protein sequence ID" value="SHH01917"/>
        <property type="gene ID" value="SAMN05444003_1678"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011200">
        <property type="entry name" value="UCP012608"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10094">
        <property type="entry name" value="DUF2332"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF012608">
        <property type="entry name" value="UCP012608"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH01917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="342" mass="37795" checksum="CA1114180286AA5B" modified="2017-03-15" version="1">MTPPAVREAFSYQSIACASLGSPFMAQLCNLFSERDWPQTALKDRVYSWTGDLSPRGESVPLRVAGGLHALYLEGRAFDGIYPPSKVSDEVLWDAVEGVLIDYDDFLCNWVKSAPQTNEVRRSSAIIAAAHVVADRFGLPLRTSELGASGGLNLKWDHYGLRIGDALWGQSGTLLLEPDWSGPKPPIASPSVVERQGVDLNPLDPTNPLAALRLRAYLWPDQPDRIERTAAAIEIAEPLVNQADAIDWLAPRLTHVPRQTHMIYHTIAWQYFPSERQTEGTKLIEAAGLQTTDQTPLAWFSMENDGGARGAALTLRLWPGDVTLNLGRADFHGRWIEWSGQC</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PJV7</accession>
    <name>A0A1M5PJV7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 4">N-(5'-phosphoribosyl)anthranilate isomerase</fullName>
            <shortName evidence="4">PRAI</shortName>
            <ecNumber evidence="2 4">5.3.1.24</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">trpF</name>
        <name evidence="6" type="ORF">SAMN05444003_1685</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>N-(5-phospho-beta-D-ribosyl)anthranilate = 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate</text>
            <dbReference type="Rhea" id="RHEA:21540"/>
            <dbReference type="ChEBI" id="CHEBI:18277"/>
            <dbReference type="ChEBI" id="CHEBI:58613"/>
            <dbReference type="EC" id="5.3.1.24"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 4">Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 3/5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the TrpF family.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.24" evidence="2 4"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02054.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900504.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1685"/>
    <dbReference type="EnsemblBacteria" id="SHH02054">
        <property type="protein sequence ID" value="SHH02054"/>
        <property type="gene ID" value="SAMN05444003_1685"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00035">
        <property type="reaction ID" value="UER00042"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004640">
        <property type="term" value="F:phosphoribosylanthranilate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000162">
        <property type="term" value="P:tryptophan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00405">
        <property type="entry name" value="PRAI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00135">
        <property type="entry name" value="PRAI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001240">
        <property type="entry name" value="PRAI_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044643">
        <property type="entry name" value="TrpF_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42894">
        <property type="entry name" value="PTHR42894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00697">
        <property type="entry name" value="PRAI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="SSF51366"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="4" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="4 6" id="KW-0413">Isomerase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0822">Tryptophan biosynthesis</keyword>
    <feature type="domain" description="PRAI" evidence="5">
        <location>
            <begin position="8"/>
            <end position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012572"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00135"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH02054.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="217" mass="23362" checksum="F658057FA872BA1B" modified="2017-03-15" version="1">MTSDVRIKICGLTTAEDIDATARAGAHYVGFNFFPKSPRYVDLDRARELAVTVPVGIAKVALVVNAENDALDQLVDRVPIDMLQLHGSESPERVAKVRDRYGLPIMKVLGIASEEDVSKVDLYSDVADQLLLDAKAPKDAALPGGNGLTFDWTLLANRKYWTKPWMLAGGLTPENVAEAIARTGARQVDVASGVESAPGQKDAGLIEAFCRAALEDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PM76</accession>
    <name>A0A1M5PM76_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized conserved protein YkwD, contains CAP (CSP/antigen 5/PR1) domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1725</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02840.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900538.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH02840">
        <property type="protein sequence ID" value="SHH02840"/>
        <property type="gene ID" value="SAMN05444003_1725"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.33.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014044">
        <property type="entry name" value="CAP_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035940">
        <property type="entry name" value="CAP_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00188">
        <property type="entry name" value="CAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55797">
        <property type="entry name" value="SSF55797"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013042121" evidence="2">
        <location>
            <begin position="26"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="domain" description="SCP" evidence="3">
        <location>
            <begin position="52"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="24"/>
            <end position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00188"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH02840.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="169" mass="17513" checksum="57FE62293BF23384" modified="2017-03-15" version="1">MKSFIPVILLVLTAACGGTSVPTNSASFAAAPTPTASTPSRGTTGDVSFQGLLNEVRSDAGSAPVTYNAQLDVAAQRHAQDMLDNNYFSHTGLNGSSVGDRATAAGYNWRTVGENIAAGFSSESSVLQAWVDSPGHQANNINPAFEEFGLGYAANGSGNRWVLVFGAQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PPT0</accession>
    <name>A0A1M5PPT0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Microcin C transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1774</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03817.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900578.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1774"/>
    <dbReference type="EnsemblBacteria" id="SHH03817">
        <property type="protein sequence ID" value="SHH03817"/>
        <property type="gene ID" value="SAMN05444003_1774"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="9"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="128"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="161"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="217"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="277"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="322"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="126"/>
            <end position="345"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH03817.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="358" mass="39387" checksum="C18D410B6685BFE5" modified="2017-03-15" version="1">MGAYILRRLLLVIPTLLGIMIINFTLIQFVPGGPVETIIARLEGGGDVFESISGGGSELAETGSESEYVGARGLPQDFIEELEREFGFDKPPLERFLNMMWNYVRFDFGESYFRSISVVDLVLEKLPVSLTLGLWTTLLAYLVSIPLGIKKAVRDGSKFDTWTSGVIIVGYAIPGFLFALLLIVLFAGGSYWRIFPLRGLTSDGFEDLSAIGKVLDYLWHITLPITAMMISGFATLTLLTKNSFLDEVRKQYVMTAKAKGLTEKAVLYGHVFRNAMLIVVAGFPAAFIGVFFGGSLIIETLFSLDGLGRLGFEAAVARDYPVVFGTLFAFTLLGLIIGIISDLMYVFIDPRIDFEGRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PPU2</accession>
    <name>A0A1M5PPU2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Microcin C transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_1773</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900577.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1773"/>
    <dbReference type="EnsemblBacteria" id="SHH03794">
        <property type="protein sequence ID" value="SHH03794"/>
        <property type="gene ID" value="SAMN05444003_1773"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025966">
        <property type="entry name" value="OppC_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12911">
        <property type="entry name" value="OppC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="20"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="169"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="215"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="286"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="333"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="7">
        <location>
            <begin position="167"/>
            <end position="359"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH03794.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="369" mass="41334" checksum="95EBA91310A5E091" modified="2017-03-15" version="1">MELSPLNKRRWQNFKRNRRAWWSLIIFSILFTITLFAEFIANDKPILVSYRGELRMPVLTFYSEQDYGGDFATEAIYSDPEVECLIVTGGLVECFDTPEELIEAVDNGETVDIEGFEAGWTIWPIIPYHYRTIVDVGGIAPSPPSAENWLGTDDTKRDVMARVIYGFRLSVLFAFIVTFAASVVGIVAGAVQGYFGGWVDLTFQRFIEIWSSTPSLYVIIILTSILGRSFWLLVILTVLFGWTALVGLIRAEFLRARNFEYVRAAKALGVSDRTLMFRHILPNAMVATLTFLPFIITGAIGGLATLDFLGFGLPSSAPSLGELTLQAKQNLQAPWLGFTAFFAFAIMLSLLVFIFEGVRDAFDPRKTFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PQL9</accession>
    <name>A0A1M5PQL9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Nucleoid-associated protein SAMN05444003_1786</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1786</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Nucleoid</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the YbaB/EbfC family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04044.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900586.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1786"/>
    <dbReference type="EnsemblBacteria" id="SHH04044">
        <property type="protein sequence ID" value="SHH04044"/>
        <property type="gene ID" value="SAMN05444003_1786"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043590">
        <property type="term" value="C:bacterial nucleoid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1310.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00274">
        <property type="entry name" value="DNA_YbaB_EbfC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036894">
        <property type="entry name" value="YbaB-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004401">
        <property type="entry name" value="YbaB/EbfC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33449">
        <property type="entry name" value="PTHR33449"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02575">
        <property type="entry name" value="YbaB_DNA_bd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004555">
        <property type="entry name" value="UCP004555"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82607">
        <property type="entry name" value="SSF82607"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00103">
        <property type="entry name" value="DNA_YbaB_EbfC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="11"/>
            <end position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH04044.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="114" mass="12185" checksum="3882A303144AE187" modified="2017-03-15" version="1">MLKGLGGLGDMAKMMKQAQEMQGKMEQMQEDLNDIMVTGESGAGLVKATATAKGELKGLDIDPSIFNGDDKEVVEDLILAAIKDAQSKAQERTQEEMAKMAEGLGLPPGMKLPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PR92</accession>
    <name>A0A1M5PR92_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Ribonuclease T2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1789</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the RNase T2 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04106.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900589.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1789"/>
    <dbReference type="EnsemblBacteria" id="SHH04106">
        <property type="protein sequence ID" value="SHH04106"/>
        <property type="gene ID" value="SAMN05444003_1789"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033897">
        <property type="term" value="F:ribonuclease T2 activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01062">
        <property type="entry name" value="RNase_T2_prok"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.730.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001568">
        <property type="entry name" value="RNase_T2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036430">
        <property type="entry name" value="RNase_T2-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018188">
        <property type="entry name" value="RNase_T2_His_AS_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033130">
        <property type="entry name" value="RNase_T2_His_AS_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039378">
        <property type="entry name" value="RNase_T2_prok"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11240">
        <property type="entry name" value="PTHR11240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00445">
        <property type="entry name" value="Ribonuclease_T2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55895">
        <property type="entry name" value="SSF55895"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00530">
        <property type="entry name" value="RNASE_T2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00531">
        <property type="entry name" value="RNASE_T2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013064751" evidence="3">
        <location>
            <begin position="18"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007469"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU004328"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH04106.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="209" mass="23638" checksum="D71B6D485FFE4500" modified="2017-03-15" version="1">MRRLLSALLCAALPAQAQDTAGEFDYYVLSLSWSPSWCALEGDARQSPQCDPSEDFGWILHGLWPQYEEGWPANCRTAFRAPSRRQTGEMADIMGTSGLAWHQWNKHGTCSGLDSAAYYALSRLAYENITRPPVLRRLSRTVTLPASVIEEAFIEANPDLEPDQITVTCRQGYIQEARICLTRDLEFRDCNPDVRRDCTMSNAQFDPIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PRM4</accession>
    <name>A0A1M5PRM4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Precorrin-8X methylmutase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_1804</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; adenosylcobalamin biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the CobH/CbiC family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04402.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900602.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1804"/>
    <dbReference type="EnsemblBacteria" id="SHH04402">
        <property type="protein sequence ID" value="SHH04402"/>
        <property type="gene ID" value="SAMN05444003_1804"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00148"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016993">
        <property type="term" value="F:precorrin-8X methylmutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10230">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003722">
        <property type="entry name" value="Cbl_synth_CobH/CbiC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036588">
        <property type="entry name" value="CobH/CbiC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02570">
        <property type="entry name" value="CbiC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63965">
        <property type="entry name" value="SSF63965"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CbiC" evidence="5">
        <location>
            <begin position="11"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009774"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02570"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH04402.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="213" mass="22392" checksum="DA0F1B5F7A88029C" modified="2017-03-15" version="1">MRPYLKDPQAIYAESFQTVRAEARLERFQEDMRPLITRVIHACGMIEVADRLVWSEGAYQAGHEALMSGASILCDCEMVGAGIIRRYLPAGNQVIVTLNEAGVPALAKEIGNTRSAAAVDLWGAHLDGAVVAIGNAPTALFRLLERIEAGAPKPAVILGFPVGFVGAAESKAELAANPRGCEFVALRGRRGGSAIASAAVNALAVGTPEGQDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PSZ1</accession>
    <name>A0A1M5PSZ1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">UDP-glucuronate 4-epimerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1822</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the NAD(P)-dependent epimerase/dehydratase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04760.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900619.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1822"/>
    <dbReference type="EnsemblBacteria" id="SHH04760">
        <property type="protein sequence ID" value="SHH04760"/>
        <property type="gene ID" value="SAMN05444003_1822"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001509">
        <property type="entry name" value="Epimerase_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01370">
        <property type="entry name" value="Epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Epimerase" evidence="2">
        <location>
            <begin position="7"/>
            <end position="260"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007637"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH04760.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="334" mass="36518" checksum="8BCAA49B58075D52" modified="2017-03-15" version="1">MTESRTALVTGSAGFIGFWLSRVLLDAGFEVVGLDSMSDYYDVGLKQARLDELSGRDGFVQHTAKVEDAEAVRAIFDDHRPDVVVHLAGQAGVRHSLKAPRDYVDANLVGTFNIMEGTREFGCQHLLMASTSSVYGANTEMPYREADKVDTQMSFYAATKKANEAMAHSYAHLHNIPTTMFRFFTVYGPWGRPDMAPYLFTSAILKGEAINVYNHGDMKRDFTYVADLVEAIRLLIDAVPEKDAGDSGSPVAPYRIVNIGNAAPVKLGDFIAAIEAATGKTATRNLMDIQPGDVPATWADTSLLSSLTGFTPSTPIENGVQNYVDWFRDYYGAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PT42</accession>
    <name>A0A1M5PT42_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cobaltochelatase CobN subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1818</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04679.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900615.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1818"/>
    <dbReference type="EnsemblBacteria" id="SHH04679">
        <property type="protein sequence ID" value="SHH04679"/>
        <property type="gene ID" value="SAMN05444003_1818"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051116">
        <property type="term" value="F:cobaltochelatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd10150">
        <property type="entry name" value="CobN_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011953">
        <property type="entry name" value="Cobalto_CobN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003672">
        <property type="entry name" value="CobN/Mg_chltase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44119">
        <property type="entry name" value="PTHR44119"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02514">
        <property type="entry name" value="CobN-Mg_chel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02257">
        <property type="entry name" value="cobalto_cobN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1241"/>
            <end position="1260"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH04679.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="1260" mass="136932" checksum="F88858C2BF101327" modified="2017-03-15" version="1">MHLLAATPGAINDGDEPFDLGQTPADIVVISAADTELAALSIARSEMEGPPNLRLANLMHLQHPMSVDLHIDNCASKSKLVIARILGGAGYWKYGFVQYAARLKEAGVPFVALPGDDNEDSELRDLSTVSDADYDALWAYFVEGGPENSANVLRYAQALLDDAEKPAAASPLLRAGVYWPGAGIADLNTIKDAWTEGQPVVPLIFYRALVQGAGLNPINRLTRSLSRAGLNPLPIFVASLKDPVSTATLDQLFQTAPPAVILNCTAFATGSPHSDDAPTTNPLASATANKAPIFQVILSSASEEAWSESPQGLSARDIAMNVALPEVDGRVLSRAVSFKGEAYFDEATECPIATYQARGDRVDFTTQLTANWTKLRTTNEAEKKVALILANYPNKDGRLANGVGLDTPAATVHVLNLLKSEGYKVTPPANSKALMDQIMAGPTNWLTDRADTKGGETLPLDTYLTYFNDLPWELKQQITDRWGTPEQDPFLLPQIPAPEASDDASGAGFKLSIHRFGNAVVGLQPARGYNIDPTETYHSPDLVPPHNYLAFYFWLRHHWRADAIVHMGKHGNLEWLPGKALALSDTCWPEAIFGPTPHIYPFITNDPGEGTQAKRRTSAVIIDHLTPPLTRAESYGPLRDLEALVDEYYEAAGVDPRRIDHLRREIMSLADVSGLAKDAAFTGDEDTDLAKLDAYLCELKEAQIRDGLHIFGLSPKGPLARDLAIALARAPRADGKGANASLLRALATDLNLSIDPLDCDLAAPALEKPTDLSGANHWRTNGDTVERLEELSQALLRDGGWGEGDSRAAPGPASQAVLDEITQTIRPLIETCGPNEGAGLLTALKGHFVVPGPSGAPTRGRLDTLPTGRNFYSVDSRAVPTPTAWALGWKSANLLIEQHLQDHGDWPRTMLLTAWGTANMRTGGDDIAQALALMGVKPTWDSANRRVIGFEVIPHTTLGRPRVDVTLRISGFFRDAFPQLIALMDSASRAVQALDEPDDINPAAARTRRGEDAHRVYGSKPGAYGAGLQALIDERIWSDRSDFAEAYLEWGSYAYSAKAEGHKAKAAFTQRLSQTEAIVQNQDNREHDILDSDDYYQFEGGAAAAVSTIQGQNRPIYHNDHSRPERPLIRMLDDEIGRVVRSRVVNPKWIDGVKRHGYKGAFEIAATVDYLFAFAATTGVVKNHHFDLCEEAFLADDATRDFIADHNAPALQDIANRLQEAIDRNLWTPRSNSARARIAAIAAGKNPDEPEAKETQTQTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PTA1</accession>
    <name>A0A1M5PTA1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1839</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05115.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900633.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1839"/>
    <dbReference type="EnsemblBacteria" id="SHH05115">
        <property type="protein sequence ID" value="SHH05115"/>
        <property type="gene ID" value="SAMN05444003_1839"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009351">
        <property type="entry name" value="YcaQ-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06224">
        <property type="entry name" value="HTH_42"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH05115.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="401" mass="46397" checksum="A456F035FAC05EEB" modified="2017-03-15" version="1">MTRTIPVLTNQKARRIFLQRHLLANAPSGKGRGDELAGVIEDLGFVQLDSVNTFARAHDLILWSRRQQYRPRALENLLSRDRKLFEHWTHDASTIPIQFFPMWRIRFERAAKELEARWAKDRRAGFLEKTHGVLKQISDEGCCCSADVGRDEEKKSGGWWDWHPSKTALEYLWHSGQLSVVRREGFRKIYDLTERVIPPEYLNAYVDERDAIDWHCNAALDRLGFATSGEISAFWATVTKQEAKEWCARELSEGRIVEIDVEGTDGTLRRSFARPELMDEQVDELSPRVRLLSPFDPALRDRKRAERLFGFNYRIEIFVPAAKRTYGYYVFPVMEGERLIGRVDMKADRPGKVLNVTAFWPEEGVRMGVGRISRLHAELQRACGLGACQEVQFQDGWLRKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q7P4</accession>
    <name>A0A1M5Q7P4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2083</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09801.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900838.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2083"/>
    <dbReference type="EnsemblBacteria" id="SHH09801">
        <property type="protein sequence ID" value="SHH09801"/>
        <property type="gene ID" value="SAMN05444003_2083"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041698">
        <property type="entry name" value="Methyltransf_25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13649">
        <property type="entry name" value="Methyltransf_25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransf_25" evidence="1">
        <location>
            <begin position="59"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH09801.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="207" mass="22331" checksum="CBD17AB8E297D9A4" modified="2017-03-15" version="1">MSDEPDLKSAYALTSNAQVEALYEEWAQSYDTGFGQAQGYQSPREVALGFIGLGGKGPVLDVGAGTGLVAEFLARAQIGPIDAVDLSAGMLDVARSKGVYRDLIVADVTQPIDTPNRYQGVVSAGTFTHGHVGPEGLVPLLDIAETGAVFALSVNRQHYENLGFAQAIDDLSDKITDVKLRDFRIYDDRADEDHRDDLAALLSFRKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QGL9</accession>
    <name>A0A1M5QGL9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Allantoin racemase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2112</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH13305.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900912.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2112"/>
    <dbReference type="EnsemblBacteria" id="SHH13305">
        <property type="protein sequence ID" value="SHH13305"/>
        <property type="gene ID" value="SAMN05444003_2112"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036361">
        <property type="term" value="F:racemase activity, acting on amino acids and derivatives"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015942">
        <property type="entry name" value="Asp/Glu/hydantoin_racemase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01177">
        <property type="entry name" value="Asp_Glu_race"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH13305.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="216" mass="23211" checksum="D38E04345F109729" modified="2017-03-15" version="1">MAVIIINPNSTRSMTDAMLAQARRSAPKLAFEGWTSHDGPPAIQGVTDGEAARAPLLKLVQQASSQGANGIIIGCFDDTALEVAAGLADCPVIGIGQASYHYAALRNWRFSVITTLSVSKPIIQSNIERYGFDHVLSKVRASEIPVLELETNTKRACKVVAQEALLAEQEDDISAIILGCAGMVEVADTVRSKLSTTVIDPVECAARCMLWMRRID</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QJV4</accession>
    <name>A0A1M5QJV4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Glycosyl transferase family 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2159</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14258.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900973.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2159"/>
    <dbReference type="EnsemblBacteria" id="SHH14258">
        <property type="protein sequence ID" value="SHH14258"/>
        <property type="gene ID" value="SAMN05444003_2159"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH14258.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="336" mass="39233" checksum="D462F1651ECB90BB" modified="2017-03-15" version="1">MGVATSYRLRWQRKRWQGRAYRKSFELKSIADRTDQIKPDDVIVFSTFRDENLRLPYFLSYYRALGVDHFIMVDNESTDSGGDYLAEQKDVSLWHAKGSYRSARYGVDWLNYLQRKYGTDHWILTVDPDELFVYPFCDSRPIHALTDWLDSSNIRSFGAMLLDMYPKGRLGDAKYVRGQDPLEIANWFDSGNYSFSKNSLFWNLWIQGGPRARMFFSKEPERAPALNKVPLVKWKKNYAYVSSTHNLLPRGLNLVYDEVGGEKASGALLHTKFLDTFADKANEELIRNQHYANGREYKAYAAGNDQNPDLWCKWSEKYINWRQLEILGIMSKGNWA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QLI9</accession>
    <name>A0A1M5QLI9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Isocitrate dehydrogenase [NADP]</fullName>
            <ecNumber evidence="1">1.1.1.42</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Oxalosuccinate decarboxylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2178</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>D-threo-isocitrate + NADP(+) = 2-oxoglutarate + CO2 + NADPH</text>
            <dbReference type="Rhea" id="RHEA:19629"/>
            <dbReference type="ChEBI" id="CHEBI:15562"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.1.1.42"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="4">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="4">Binds 1 Mg(2+) or Mn(2+) ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the monomeric-type IDH family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.42" evidence="1"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14649.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901003.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2178"/>
    <dbReference type="EnsemblBacteria" id="SHH14649">
        <property type="protein sequence ID" value="SHH14649"/>
        <property type="gene ID" value="SAMN05444003_2178"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004450">
        <property type="term" value="F:isocitrate dehydrogenase (NADP+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006097">
        <property type="term" value="P:glyoxylate cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004436">
        <property type="entry name" value="Isocitrate_DH_NADP_mono"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36999">
        <property type="entry name" value="PTHR36999"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03971">
        <property type="entry name" value="IDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF009407">
        <property type="entry name" value="IDH_monmr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00178">
        <property type="entry name" value="monomer_idh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0329">Glyoxylate bypass</keyword>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1 5" id="KW-0521">NADP</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="3">
        <location>
            <begin position="132"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="82"/>
            <end position="87"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="135"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="145"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="540"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="577"/>
            <end position="578"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="582"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="593"/>
            <end position="595"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="642"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="site" description="Critical for catalysis" evidence="2">
        <location>
            <position position="254"/>
        </location>
    </feature>
    <feature type="site" description="Critical for catalysis" evidence="2">
        <location>
            <position position="414"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR009407"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR009407-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR009407-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR009407-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR009407-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH14649.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="731" mass="78038" checksum="3F67D63A146423C4" modified="2017-03-15" version="1">MSTPDIIYTKVDEAPELASASFLPIIQKFAAAAGVTVGTKDISLAGRIIATFPEALTEDQRINDDLAELGRLVKTAEANVVKLPNISASVPQLVAAVEEMQSQGYALPNYPEDPQTDEEKTVRAKYDGIKGSAVNPVLREGNSDRRAAKAVKSYAQNNPHRMGDWVSDSKTRVASMDGNDFRSNEVSATLAAETGAKIVLETANGETVLKDGLSFPAGTVVDATFMSAAALDAFLEAEIAKTKEEGILFSLHMKATMMKVSDPIIFGHAVKAFLKPVFDKFGAEMEALGVNPNQGLGAVLERVEGNAEIKAAIDACMADQPPMYMVDSDRGITNLHVPSDVIIDASMPALIRAGGKGWGPDGKEADAVCVIPDNSYAPVYDETINFFKANGKLNPATAGTVQNIGLMAQKAEEYGSHPTTFEIAEAGTVKMILDDGTVLHSHDVQPGDIWRSASARKAPIEDWVNLAISRQKAEGCEAVFWLDETRAHDAELIAYVTPILEAAGVADKFKIMAPREATRAALETITAGKNHIAITGNVLRDYLTDLFPILELATSAKMLSIVKLMQGGGLFETGAGGSAPKHVQQLNEENHLRWDSLGEFTALGESFQFLAENRGNAKAKILGEAVDAATQGILDNNRSPSRKVGEPDNRDSHYWFARYWAEALAAQSDDADLAAHFAPIAKALVDGEEAIVAELAAAQGAPADLGGYYKTDPAKTAAVMRPSATLNAIID</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QMN9</accession>
    <name>A0A1M5QMN9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Peptide/nickel transport system ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2187</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14833.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901019.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2187"/>
    <dbReference type="EnsemblBacteria" id="SHH14833">
        <property type="protein sequence ID" value="SHH14833"/>
        <property type="gene ID" value="SAMN05444003_2187"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015833">
        <property type="term" value="P:peptide transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013563">
        <property type="entry name" value="Oligopep_ABC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08352">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="6">
        <location>
            <begin position="6"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="6">
        <location>
            <begin position="277"/>
            <end position="517"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="42"/>
            <end position="49"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="309"/>
            <end position="316"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH14833.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="548" mass="59970" checksum="6DF8EBDD2925B64D" modified="2017-03-15" version="1">MSDPLVKIRGLKLEGRSDEMWMPIINGVDLTLNRGEVLGLIGESGAGKSTLGLAAMGYTRDGVRISEGSVEFDGIDLLTASAAVKRGLLGKRIAYVAQSAAASFNPAHKIIDQHTEAPTQHGVMGRNESVDDGITLYNKLRLPNPETIGFRYPHQVSGGQLQRAMTAMAMSCRPDLIIFDEPTTALDVTTQIEVLASIREIVEEYDTAAIYITHDLAVVAQMADNIKVLLKGDEVETADTRTMLSKPQEEYTKSLWAVRSFERPAKPAINTGATPVVSIQNVDAAYGTVKVLEDVSFDIHEGRTVAVVGESGSGKSTTARCITGLLPPTKGQILFDGQVLPASYKARDKFQLRQAQMIYQMADTALNPRMSIGKIIERPVQFYMGLSGKALRQRVDELLEQIELEPDKYFNRLPSELSGGQKQRIGIARALAAEPKFIICDEVTSALDQLVAEGILRLLADLQDKLSLSYMFITHDLATVRAISDEVVVMKDGRVIEQSAKAEMFQPPHHAYTDLLLSSVPEMDPDWLTNLLNERGVDNIGDAAVDKM</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QN60</accession>
    <name>A0A1M5QN60_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">8-oxo-dGTP pyrophosphatase MutT, NUDIX family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2205</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901049.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2205"/>
    <dbReference type="EnsemblBacteria" id="SHH15229">
        <property type="protein sequence ID" value="SHH15229"/>
        <property type="gene ID" value="SAMN05444003_2205"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010945">
        <property type="term" value="F:CoA pyrophosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03426">
        <property type="entry name" value="CoAse"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045121">
        <property type="entry name" value="CoAse"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12992">
        <property type="entry name" value="PTHR12992"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="1">
        <location>
            <begin position="37"/>
            <end position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH15229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="197" mass="21841" checksum="4D865B0F2440BDCE" modified="2017-03-15" version="1">MATDLHQILSDALTRPGGASSDFDLNPDIVLPEGRTLKPAAVLIGVRAETQSVILTKRSSRLKHHPGQIAFPGGKQDETDSNLAETALREAKEEIGLPRENATVLGQMDAHETVTGFQVSPILAVIEGSFDIKPEQGEVEEVFEVPFSFLTDPKNFRVESRRWQGRRRHFYVAPFGPYYIWGATARMLRGLAERISS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-09-29" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QTK9</accession>
    <name>A0A1M5QTK9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">VPLPA-CTERM protein sorting domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2316</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17487.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH17487">
        <property type="protein sequence ID" value="SHH17487"/>
        <property type="gene ID" value="SAMN05444003_2316"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022472">
        <property type="entry name" value="VPLPA-CTERM"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03370">
        <property type="entry name" value="VPLPA-CTERM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012657738" evidence="1">
        <location>
            <begin position="23"/>
            <end position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH17487.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="238" mass="24853" checksum="229CBB62AB55FC22" modified="2017-03-15" version="1">MAKITTFIAASCLAFAGATANAATVTNGSFEDFDGDLNGGGWNFFDTIDVAGWSGTPNIEIQTYKGVGSPANGTIGLDPIDNTVGSHYAELDTNTNSVLSQTINFAEAGRYVLSFLYSPRVDNPDTDTNDMSFKIEGQGDTVLEETILGAPNGDYPHGEWTRADSFFTIESLGDYVLSFAALGGSLFNGCGNCGALIDDVSIAAVIGENPQPVPLPASSLLLLAGLGGLGAMRRMKRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R0V2</accession>
    <name>A0A1M5R0V2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2442</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH20005.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901415.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH20005">
        <property type="protein sequence ID" value="SHH20005"/>
        <property type="gene ID" value="SAMN05444003_2442"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH20005.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="186" mass="18393" checksum="C025DD0E7705B2AC" modified="2017-03-15" version="1">MLRSISALAAFSILAGCLNGVGSNDAAGPIESNSFLASSSFEGATTMTGELDVAGFGTLGFSVETDSNGNSTFLAAPLTPKSSLPELFHPNAGSAPMSGNWAVAYAANGINFGDEGDVALTLDFEKGTLSGSGDGLVLAGQFVDGVLTGTASFNGASGQLEGVVGSNTSVGFFVGPNFVGAFSVSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RBD6</accession>
    <name>A0A1M5RBD6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NADP-dependent 3-hydroxy acid dehydrogenase YdfG</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2488</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23571.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901565.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2488"/>
    <dbReference type="EnsemblBacteria" id="SHH23571">
        <property type="protein sequence ID" value="SHH23571"/>
        <property type="gene ID" value="SAMN05444003_2488"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH23571.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="252" mass="26248" checksum="C513653D47E9E30C" modified="2017-03-15" version="1">MKNFGLNGKTVVITGASKGIGASAARAFADGGANVVLLARSTDLITALAGELGENTMAIACDVSDYASVSSAFASAKDKFGQIDILIGNAGVVDPIGHLADTDPAAWCKLIDINLKGVMHGMHAALPDMVAQGGGTIITVSSGAAHGPVEGWTAYCSSKAGAYMLTRAADKEYRERGIRVLGLSPGTVATDMQREIKASGINPVSQLDWSDHIPPEWPAKALMWMCTSEADGFLGDDVSLRDEDIRRQVGLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RFF9</accession>
    <name>A0A1M5RFF9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Acetyl-CoA C-acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2545</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the thiolase-like superfamily. Thiolase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24739.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901654.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2545"/>
    <dbReference type="EnsemblBacteria" id="SHH24739">
        <property type="protein sequence ID" value="SHH24739"/>
        <property type="gene ID" value="SAMN05444003_2545"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00751">
        <property type="entry name" value="thiolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002155">
        <property type="entry name" value="Thiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020615">
        <property type="entry name" value="Thiolase_acyl_enz_int_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020610">
        <property type="entry name" value="Thiolase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020617">
        <property type="entry name" value="Thiolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020613">
        <property type="entry name" value="Thiolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020616">
        <property type="entry name" value="Thiolase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02803">
        <property type="entry name" value="Thiolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00108">
        <property type="entry name" value="Thiolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000429">
        <property type="entry name" value="Ac-CoA_Ac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01930">
        <property type="entry name" value="AcCoA-C-Actrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00098">
        <property type="entry name" value="THIOLASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00737">
        <property type="entry name" value="THIOLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00099">
        <property type="entry name" value="THIOLASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thiolase_N" evidence="5">
        <location>
            <begin position="4"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="domain" description="Thiolase_C" evidence="6">
        <location>
            <begin position="269"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-thioester intermediate" evidence="3">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="3">
        <location>
            <position position="347"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="3">
        <location>
            <position position="377"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000429-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH24739.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="391" mass="40595" checksum="42FE3B82D636B03A" modified="2017-03-15" version="1">MTDIVILSGARTAIGTFGGSLAGTTPIELGTTVSKAALDRAGLEGRQIGHVAFGHVINTEPKDMYVSRVASMNAGVPDTTPAMNVNRLCGSGVQAIVSVVQSLMLGDADFGLAGGSENMSRSPFIIPQQRWGAKMGDVRTQDMMLGALNCPFGTGHMGVTAENVAREHGISRDDQDAFAALSQERAAKAQAAGYFDDQIVPIEVKVKRDMVAFDKDEHLKATTVETLAGLRPVFEKDGTVTAGNASGLNDGAAAVTLARADAAEKAGLTPKFRVLGYAHAGVRPEVMGIGPVPAVQNLMEKTGLTIADFDVIESNEAFAAQALAVTNELGLHPAKVNPNGGAIALGHPVGATGTIITVKAMYELERIQGHRALITMCIGGGQGIALAIEKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RJ70</accession>
    <name>A0A1M5RJ70_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="13">3-isopropylmalate dehydrogenase</fullName>
            <ecNumber evidence="13">1.1.1.85</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">3-IPM-DH</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">Beta-IPM dehydrogenase</fullName>
            <shortName evidence="13">IMDH</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="primary">leuB</name>
        <name evidence="16" type="ORF">SAMN05444003_2621</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="13 14">Catalyzes the oxidation of 3-carboxy-2-hydroxy-4-methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2-oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 13 14">
            <text>(2R,3S)-3-isopropylmalate + NAD(+) = 4-methyl-2-oxopentanoate + CO2 + NADH</text>
            <dbReference type="Rhea" id="RHEA:32271"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:17865"/>
            <dbReference type="ChEBI" id="CHEBI:35121"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.1.1.85"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="13 14">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="13 14">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="13 14">Binds 1 Mg(2+) or Mn(2+) ion per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3 13 14">Amino-acid biosynthesis; L-leucine biosynthesis; L-leucine from 3-methyl-2-oxobutanoate: step 3/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5 13 14">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="13">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 13">Belongs to the isocitrate and isopropylmalate dehydrogenases family. LeuB type 1 subfamily.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.85" evidence="13"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26325.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901772.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2621"/>
    <dbReference type="EnsemblBacteria" id="SHH26325">
        <property type="protein sequence ID" value="SHH26325"/>
        <property type="gene ID" value="SAMN05444003_2621"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00048">
        <property type="reaction ID" value="UER00072"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003862">
        <property type="term" value="F:3-isopropylmalate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009098">
        <property type="term" value="P:leucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01033">
        <property type="entry name" value="LeuB_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019818">
        <property type="entry name" value="IsoCit/isopropylmalate_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024084">
        <property type="entry name" value="IsoPropMal-DH-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004429">
        <property type="entry name" value="Isopropylmalate_DH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42979">
        <property type="entry name" value="PTHR42979"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00180">
        <property type="entry name" value="Iso_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01329">
        <property type="entry name" value="Iso_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00169">
        <property type="entry name" value="leuB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00470">
        <property type="entry name" value="IDH_IMDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 13" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="12 13 14" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="13" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 13 14" id="KW-0432">Leucine biosynthesis</keyword>
    <keyword evidence="9 13" id="KW-0460">Magnesium</keyword>
    <keyword evidence="13" id="KW-0464">Manganese</keyword>
    <keyword evidence="8 13 14" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11 13 14" id="KW-0520">NAD</keyword>
    <keyword evidence="10 13" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Iso_dh" evidence="15">
        <location>
            <begin position="5"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <begin position="77"/>
            <end position="90"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="97"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="107"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="135"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="225"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="249"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="253"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <begin position="288"/>
            <end position="300"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="site" description="Important for catalysis" evidence="13">
        <location>
            <position position="142"/>
        </location>
    </feature>
    <feature type="site" description="Important for catalysis" evidence="13">
        <location>
            <position position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000624"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004762"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00008319"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022430"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU004445"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="SMART" id="SM01329"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="SHH26325.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="368" mass="39772" checksum="DE32C8C561278E6F" modified="2017-03-15" version="1">MSNPSLLILAGDGIGPEVMEQVKRIIGWYGDKRDLTFDVFEDLVGGAAYDAHGVPLHDDTMAKAQKVDAVLLGAVGGPAYDDLDFSVKPERGLLRLRKEMDLFANLRPAQCFDALADFSSLKKDIVAGLDIMIVRELTSGVYFGEPRGIHVEDNMRVGINTQRYTEAEIERAARSAFELARRRNNKVCSMEKANVMESGILWRDVVNEVHQADYADVELSHMYADNGAMQLVRAPKQFDVILTDNLFGDILSDCAAMLTGSLGMLPSASLGLPMANGRPKAMYEPVHGSAPDIAGQGKANPIACILSFAMALRYSFDEGAEADRLEAAIEKVLADGARTGDLMGPEGGTPISTTEMGDVILEALDASL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RVQ5</accession>
    <name>A0A1M5RVQ5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="13">Phenylalanine--tRNA ligase alpha subunit</fullName>
            <ecNumber evidence="13">6.1.1.20</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">Phenylalanyl-tRNA synthetase alpha subunit</fullName>
            <shortName evidence="13">PheRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="primary">pheS</name>
        <name evidence="15" type="ORF">SAMN05444003_2723</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 13">
            <text>ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + H(+) + L-phenylalanyl-tRNA(Phe)</text>
            <dbReference type="Rhea" id="RHEA:19413"/>
            <dbReference type="Rhea" id="RHEA-COMP:9668"/>
            <dbReference type="Rhea" id="RHEA-COMP:9699"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58095"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78531"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.20"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="13">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="13">Binds 2 magnesium ions per tetramer.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4 13">Tetramer of two alpha and two beta subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 13">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 13">Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.20" evidence="13"/>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30385.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902227.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2723"/>
    <dbReference type="EnsemblBacteria" id="SHH30385">
        <property type="protein sequence ID" value="SHH30385"/>
        <property type="gene ID" value="SAMN05444003_2723"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004826">
        <property type="term" value="F:phenylalanine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006432">
        <property type="term" value="P:phenylalanyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00281">
        <property type="entry name" value="Phe_tRNA_synth_alpha1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004529">
        <property type="entry name" value="Phe-tRNA-synth_IIc_asu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004530">
        <property type="entry name" value="Phe-tRNA-synth_IIc_mito"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004188">
        <property type="entry name" value="Phe-tRNA_ligase_II_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022911">
        <property type="entry name" value="Phe_tRNA_ligase_alpha1_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002319">
        <property type="entry name" value="Phenylalanyl-tRNA_Synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010978">
        <property type="entry name" value="tRNA-bd_arm"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11538:SF41">
        <property type="entry name" value="PTHR11538:SF41"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02912">
        <property type="entry name" value="Phe_tRNA-synt_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01409">
        <property type="entry name" value="tRNA-synt_2d"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46589">
        <property type="entry name" value="SSF46589"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00468">
        <property type="entry name" value="pheS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12 13 15" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="9 13" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 13" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 13" id="KW-0436">Ligase</keyword>
    <keyword evidence="10 13" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7 13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8 13" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11 13" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AA_TRNA_LIGASE_II" evidence="14">
        <location>
            <begin position="107"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="257"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000395"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010207"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS50862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="SHH30385.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="357" mass="39651" checksum="95ADFD8171EAA21D" modified="2017-03-15" version="1">MDDLKAKYLDLIGNASDEAGLEDLRVQALGKKGEISLKMRELGKMSPEERQVAGPALNALKNEINSALVAKKSALEDAALDARLKDEWLDVTLPGRGRGQGTIHPISQVTEEVTAIFADMGFSVAEGPQIESDWYNFDALNIPGHHPARAEMDTFYTHRAEGDNRPPHVLRTHTSPVQIRSMEATGAPTRIICPGRVYRADYDQTHTPMFHQVEGLAIDKDISMANLKWVLEEFVKSYFEVDNVDIRFRASHFPFTEPSAEVDIRCSWEGGTLKVGEGDDWLEILGSGMVHPKVLQAGGIDPTEWQGFAFGMGIDRIAMLKYGIPDLRAFFDSDLRWLRHYGFAALDQPTLAGGLSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RZ01</accession>
    <name>A0A1M5RZ01_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Endonuclease III</fullName>
            <ecNumber evidence="9">4.2.99.18</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">DNA-(apurinic or apyrimidinic site) lyase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">nth</name>
        <name evidence="11" type="ORF">SAMN05444003_2769</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>2'-deoxyribonucleotide-(2'-deoxyribose 5'-phosphate)-2'-deoxyribonucleotide-DNA = a 3'-end 2'-deoxyribonucleotide-(2,3-dehydro-2,3-deoxyribose 5'-phosphate)-DNA + a 5'-end 5'-monophospho-2'-deoxyribonucleoside-DNA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:66592"/>
            <dbReference type="Rhea" id="RHEA-COMP:13180"/>
            <dbReference type="Rhea" id="RHEA-COMP:16897"/>
            <dbReference type="Rhea" id="RHEA-COMP:17067"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:136412"/>
            <dbReference type="ChEBI" id="CHEBI:157695"/>
            <dbReference type="ChEBI" id="CHEBI:167181"/>
            <dbReference type="EC" id="4.2.99.18"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="9">Binds 1 [4Fe-4S] cluster.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 9">Belongs to the Nth/MutY family.</text>
    </comment>
    <dbReference type="EC" id="4.2.99.18" evidence="9"/>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31455.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2769"/>
    <dbReference type="EnsemblBacteria" id="SHH31455">
        <property type="protein sequence ID" value="SHH31455"/>
        <property type="gene ID" value="SAMN05444003_2769"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140078">
        <property type="term" value="F:class I DNA-(apurinic or apyrimidinic site) endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019104">
        <property type="term" value="F:DNA N-glycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006284">
        <property type="term" value="P:base-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00056">
        <property type="entry name" value="ENDO3c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1670.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00942">
        <property type="entry name" value="Nth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011257">
        <property type="entry name" value="DNA_glycosylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003651">
        <property type="entry name" value="Endonuclease3_FeS-loop_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004035">
        <property type="entry name" value="Endouclease-III_FeS-bd_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003265">
        <property type="entry name" value="HhH-GPD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023170">
        <property type="entry name" value="HhH_base_excis_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000445">
        <property type="entry name" value="HhH_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005759">
        <property type="entry name" value="Nth"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10576">
        <property type="entry name" value="EndIII_4Fe-2S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00633">
        <property type="entry name" value="HHH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00730">
        <property type="entry name" value="HhH-GPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00478">
        <property type="entry name" value="ENDO3c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48150">
        <property type="entry name" value="SSF48150"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01083">
        <property type="entry name" value="nth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00764">
        <property type="entry name" value="ENDONUCLEASE_III_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="3 9" id="KW-0227">DNA damage</keyword>
    <keyword evidence="7 9" id="KW-0234">DNA repair</keyword>
    <keyword evidence="9" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="11" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="8 9" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="4 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 9" id="KW-0408">Iron</keyword>
    <keyword evidence="6 9" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="9 11" id="KW-0456">Lyase</keyword>
    <keyword evidence="2 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-0540">Nuclease</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ENDO3c" evidence="10">
        <location>
            <begin position="54"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="203"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="210"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="213"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="219"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008343"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM00478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH31455.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="226" mass="25496" checksum="00B56580154AA727" modified="2017-03-15" version="1">MQATRKLRIDFRMAKQLDYNTIREIFERFQEAEAEPKGELNHTNAYTLVVAVALSAQATDKGVNKATEALFKKVETPQQMLDLGIDELTDHIKTIGLYRQKAKNVMKMSQILVDVYDGVVPNSRAALQSLPGVGRKTANVVLNMWWQQPAQAVDTHIFRVGNRSGIAPGKDVDAVERAIEDNIPADFQLHAHHWLILHGRYTCVARKPKCAACLIRDLCMFEDKNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RZG2</accession>
    <name>A0A1M5RZG2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Core-2/I-Branching enzyme</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_2774</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31551.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902059.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2774"/>
    <dbReference type="EnsemblBacteria" id="SHH31551">
        <property type="protein sequence ID" value="SHH31551"/>
        <property type="gene ID" value="SAMN05444003_2774"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030158">
        <property type="term" value="F:protein xylosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030166">
        <property type="term" value="P:proteoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045972">
        <property type="entry name" value="DUF5928"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003406">
        <property type="entry name" value="Glyco_trans_14"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043538">
        <property type="entry name" value="XYLT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46025">
        <property type="entry name" value="PTHR46025"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02485">
        <property type="entry name" value="Branch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19350">
        <property type="entry name" value="DUF5928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="7" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DUF5928" evidence="8">
        <location>
            <begin position="270"/>
            <end position="524"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF19350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH31551.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="525" mass="61453" checksum="188CCF222BA69D62" modified="2017-03-15" version="1">MAKIAFILLCHKDPEAIIQQAKQFTAVGDYISIHFDARAPKEAYDLIRKKLYGNPNVAFAKKRIKCGWGEWSLVQATLYAVEAAVDAFPRATHFYMVSGDCMSIKSAKYAHKFLDANDVDYIESFDYFESDWIKTGLKEERLIYRHWFNERTQKRRFYWSFWTQRKLGITREVPNDIQIMIGSQWWCLRRRTIEWILNFVKERRDVVRFFKTTWIPDETFFQTLVRHLVPADEIKTRTLTFLMFTDYGMPLTFYNDHYDLLIGQDGLFARKISPEAAELKSRLGKLYASDQEDFNVSAEGWNLFKFLTGRGRIGRRFAPRFWEAEATLGRDRELFVIVCKKWHVAKRLSASIRNHTDIPAIDYLFNEDQTDLPDLGGIQTSLAKRTRHRRSLMRMLFDYYETEKLVICLDTANIDLLEDFFSDRSRARLLEVECDFSDEYLIGHAKRVGLAAPDSSQETLGQIIPTIRYDIAFESERIQDSNFQGYHRIQQDHSQAKNAEILGSFLDVTPEVAQELSATPYLFDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S2Q1</accession>
    <name>A0A1M5S2Q1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2831</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the pirin family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32922.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902141.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2831"/>
    <dbReference type="EnsemblBacteria" id="SHH32922">
        <property type="protein sequence ID" value="SHH32922"/>
        <property type="gene ID" value="SAMN05444003_2831"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012093">
        <property type="entry name" value="Pirin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008778">
        <property type="entry name" value="Pirin_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003829">
        <property type="entry name" value="Pirin_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13903">
        <property type="entry name" value="PTHR13903"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02678">
        <property type="entry name" value="Pirin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05726">
        <property type="entry name" value="Pirin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006232">
        <property type="entry name" value="Pirin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pirin" evidence="4">
        <location>
            <begin position="33"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="domain" description="Pirin_C" evidence="5">
        <location>
            <begin position="191"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="290"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="306"/>
            <end position="322"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003457"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02678"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF05726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH32922.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="322" mass="36059" checksum="7EC32A0EBD4BDED7" modified="2017-03-15" version="1">MSWNPTQNPKCPFQPDNGIETLIIPRARDLGGFEVRRALPAPKRQMVGPFIFFDQMGPAEFITDGGIDVRPHPHIGLGTVTYLYQGEFEHRDSLGTHQMIYPGEVNWMVAGRGVTHSERTSAETRATRHKLFGIQTWIALPEDREEMAPDFEHHKQGALPEIEDTGLKAKLILGSAYGETSPVTMQSETFYLDVNLEAGTSFPLPDNHEDRGIYVTEGSILVAGDTYEAGRMMVFRPGDKITVTAGEKGARLMTLGGATMNEGRYIWWNFVSSSRDRIEEAKEAWKAADWEKGPFRLPPGDDQEHIPITPELERGIPRNPRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S4M0</accession>
    <name>A0A1M5S4M0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2858</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33562.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902186.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH33562">
        <property type="protein sequence ID" value="SHH33562"/>
        <property type="gene ID" value="SAMN05444003_2858"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012296567" evidence="1">
        <location>
            <begin position="23"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH33562.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="181" mass="20142" checksum="FB610D8B9925B80B" modified="2017-03-15" version="1">MTAFKSSMLATVLFAVSTLQPAAQTLDADELLNLSKTDFLDVYADIYRQNLEITNTLVTRMGDEFAGTVDVDSPLSEEELASFECAYDIMAEAGELDAMVMQLKMIDPIRQRMEADPEFSYINLALDEDVLEEMTPPESEAFDRSFSECRSAFVISGRLNFGENFWAKVTEAATAKGLVDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-09-29" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S5E7</accession>
    <name>A0A1M5S5E7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Predicted metal-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2864</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33706.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902196.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH33706">
        <property type="protein sequence ID" value="SHH33706"/>
        <property type="gene ID" value="SAMN05444003_2864"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012863">
        <property type="entry name" value="DUF1636"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07845">
        <property type="entry name" value="DUF1636"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH33706.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="131" mass="14456" checksum="C14FC591D1E39005" modified="2017-03-15" version="1">MEHRITVCTSCRHKGTECRPGYELIERLRKAIAQAGDAIPEEFEVSGVACMAGCDRPCTVAYHGTKKATYLFGDMDPDVDIDDLVEFAKQYAYLHDGWCSSVDRPGKLRKSTLARVPAAMIAIEESEVLAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SE59</accession>
    <name>A0A1M5SE59_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">C4-dicarboxylate transporter, DctM subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2918</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36720.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902315.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2918"/>
    <dbReference type="EnsemblBacteria" id="SHH36720">
        <property type="protein sequence ID" value="SHH36720"/>
        <property type="gene ID" value="SAMN05444003_2918"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010656">
        <property type="entry name" value="DctM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004681">
        <property type="entry name" value="TRAP_DctM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33362">
        <property type="entry name" value="PTHR33362"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06808">
        <property type="entry name" value="DctM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006066">
        <property type="entry name" value="HI0050"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="6"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="55"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="96"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="136"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="172"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="217"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="249"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="315"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="345"/>
            <end position="367"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="374"/>
            <end position="393"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="399"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="433"/>
            <end position="461"/>
        </location>
    </feature>
    <feature type="domain" description="DctM" evidence="4">
        <location>
            <begin position="7"/>
            <end position="457"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF06808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH36720.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="473" mass="50259" checksum="200B8D8CCBA2EB90" modified="2017-03-15" version="1">MEVILLFTMIIGLLLIGVPIAVSLGLSSIIFLLVFSDTSLASIAQSFYQAMAGHYTLLAIPFFILASTFMSTGGVAKRIIRFSIACVGHLQGGLAIAGVLACMMFAALSGSSPATVVAIGTIVIAAMKQVGYTKEFAAGVICNAGTLGILIPPSIVMVVYASATDVSVGRMFLAGVIPGILAGVMLMVTIYILARIRNMPKGEWKGWGEIFDSLRDAFWGLLLIGIIMGGIYGHPWYTPSLGMYWRPGAFTPTEAAAVAAIYAFFVATFIYRDMGPLAPAEEGGRPRSLFTAPWALITAPFHKDTRTALFEGGKLTITLMFIIANALILKHVLTDEQVPQHIAEAMLAAGLGPITFLIVVNVILLIGGQFMEPSGLLVIVAPLVFPIAIELGIDPIHLGIIMVVNMEIGMITPPVGLNLFVTSGVAGMPMMAVVRAAAPFLAVLFVFLILVTYIPAISIWLPTLMMGPEIIVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SEE1</accession>
    <name>A0A1M5SEE1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2928</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36967.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH36967">
        <property type="protein sequence ID" value="SHH36967"/>
        <property type="gene ID" value="SAMN05444003_2928"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="38"/>
            <end position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH36967.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="60" mass="6776" checksum="42F6C5F70034EA1B" modified="2017-03-15" version="1">MDHLTLTPTLATTIFVITCFCGFQYRRVWKAEGPRYQYWVYGCIAAAGLLTLGFVPLDVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SF09</accession>
    <name>A0A1M5SF09_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, AsnC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2932</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902538.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2932"/>
    <dbReference type="EnsemblBacteria" id="SHH37059">
        <property type="protein sequence ID" value="SHH37059"/>
        <property type="gene ID" value="SAMN05444003_2932"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000485">
        <property type="entry name" value="AsnC-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019888">
        <property type="entry name" value="Tscrpt_reg_AsnC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019887">
        <property type="entry name" value="Tscrpt_reg_AsnC/Lrp_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019885">
        <property type="entry name" value="Tscrpt_reg_HTH_AsnC-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01037">
        <property type="entry name" value="AsnC_trans_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00033">
        <property type="entry name" value="HTHASNC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00344">
        <property type="entry name" value="HTH_ASNC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00519">
        <property type="entry name" value="HTH_ASNC_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50956">
        <property type="entry name" value="HTH_ASNC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH asnC-type" evidence="4">
        <location>
            <begin position="6"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH37059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="166" mass="18475" checksum="9BCCF552125705AB" modified="2017-03-15" version="1">MPGTKLDDIDRMILAELQADGRMTNVELAKRVGISAPPCLRRVRTLEEQGFVRGYHANVDPRELGFEVQVFAMVGLVSQAEADLSAFEELCQGWPLVRECHMLNGEVDFILKCVAPDLRTFQRFLTEELTSADNVASVKTSLVIRGAKDEPGVPFDVLEERLAKEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SFD7</accession>
    <name>A0A1M5SFD7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">SAM-dependent methyltransferase, MidA family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2936</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Mitochondrion</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37150.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902339.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2936"/>
    <dbReference type="EnsemblBacteria" id="SHH37150">
        <property type="protein sequence ID" value="SHH37150"/>
        <property type="gene ID" value="SAMN05444003_2936"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12710">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003788">
        <property type="entry name" value="NDUFAF7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038375">
        <property type="entry name" value="NDUFAF7_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12049">
        <property type="entry name" value="PTHR12049"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02636">
        <property type="entry name" value="Methyltransf_28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH37150.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="351" mass="37452" checksum="9A3064921BAC5DE5" modified="2017-03-15" version="1">MTALADELKARIARFGPVTVAEYMAECLMHPTHGYYTTRDPLGRAGDFTTAPEISQMFGEMVGLCLAQVWMDQGQPSPFTLAELGPGRGTLMADILRAARGVPGFTEAAEVHLVEVSPTLRAAQSVTVGGAMFHDSVESLPDQPLFLVANEFFDALPIRQFIRAEGGWSERMIGLEDEELVFGLSAAAPIAMLDEKLESTAVGDMIETCGALPGIAHVVGDLIARNGGAALIIDYGGWDARGDTFQAVKYHQKVDPLAEPGQADLTAHVDFAAIAAAVPSAVTEMTDQGVFLERLGITQRAQRLAQSLSGDALKEHIAAHRRLTHPDEMGHLFKVIGLYPNGAPPPAGLTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SFE4</accession>
    <name>A0A1M5SFE4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase</fullName>
            <ecNumber evidence="2">2.5.1.145</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">lgt</name>
        <name evidence="3" type="ORF">SAMN05444003_2937</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycerol) + L-cysteinyl-[prolipoprotein] = H(+) + S-1,2-diacyl-sn-glyceryl-L-cysteinyl-[prolipoprotein] + sn-glycerol 1-phosphate</text>
            <dbReference type="Rhea" id="RHEA:56712"/>
            <dbReference type="Rhea" id="RHEA-COMP:14679"/>
            <dbReference type="Rhea" id="RHEA-COMP:14680"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:57685"/>
            <dbReference type="ChEBI" id="CHEBI:64716"/>
            <dbReference type="ChEBI" id="CHEBI:140658"/>
            <dbReference type="EC" id="2.5.1.145"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Protein modification; lipoprotein biosynthesis (diacylglyceryl transfer).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the Lgt family.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.145" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902341.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2937"/>
    <dbReference type="EnsemblBacteria" id="SHH37175">
        <property type="protein sequence ID" value="SHH37175"/>
        <property type="gene ID" value="SAMN05444003_2937"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00664"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008961">
        <property type="term" value="F:phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042158">
        <property type="term" value="P:lipoprotein biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01147">
        <property type="entry name" value="Lgt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001640">
        <property type="entry name" value="Lgt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30589">
        <property type="entry name" value="PTHR30589"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01790">
        <property type="entry name" value="LGT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00544">
        <property type="entry name" value="lgt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="28"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="69"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="101"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="136"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="197"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="223"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="268"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="152"/>
        </location>
        <ligand>
            <name>1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycerol)</name>
            <dbReference type="ChEBI" id="CHEBI:64716"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01147"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH37175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="296" mass="32905" checksum="ECBBE9B7C25E7CA2" modified="2017-03-15" version="1">MLGAISFPNISPEIFSIELFGFNLALRWYALSYIVGIALGWFLIAATLKRPQLWPNDTPPMDKSYLEDLLTYIVIGVIAGGRLGYVLIYDPAHFIQNPLEILMIWTGGLSFHGGFLGVIIAVTLFSRRKSVPLPQLSDVIALAATPAILLVRCANFINGELWGRPTDVPWGVIFPSAAAQDCPEVVDILCARHPSQLYEAALEGLLLGALLFYLAFRRRAFKMPWLMTGVFFFVYGTARFLVEFVRQPDAQFRGPDNPLGWALDFGEWGLTMGQILSTPMILIGLALIITARRRAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SFY0</accession>
    <name>A0A1M5SFY0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Na(+)-translocating NADH-quinone reductase subunit E</fullName>
            <shortName evidence="10">Na(+)-NQR subunit E</shortName>
            <shortName evidence="10">Na(+)-translocating NQR subunit E</shortName>
            <ecNumber evidence="10">7.2.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">NQR complex subunit E</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">NQR-1 subunit E</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">nqrE</name>
        <name evidence="11" type="ORF">SAMN05444003_2921</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>a ubiquinone + H(+) + n Na(+)(in) + NADH = a ubiquinol + n Na(+)(out) + NAD(+)</text>
            <dbReference type="Rhea" id="RHEA:47748"/>
            <dbReference type="Rhea" id="RHEA-COMP:9565"/>
            <dbReference type="Rhea" id="RHEA-COMP:9566"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16389"/>
            <dbReference type="ChEBI" id="CHEBI:17976"/>
            <dbReference type="ChEBI" id="CHEBI:29101"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="7.2.1.1"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="10">Composed of six subunits; NqrA, NqrB, NqrC, NqrD, NqrE and NqrF.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cell membrane</location>
            <topology evidence="10">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the NqrDE/RnfAE family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="7.2.1.1" evidence="10"/>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36793.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902319.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2921"/>
    <dbReference type="EnsemblBacteria" id="SHH36793">
        <property type="protein sequence ID" value="SHH36793"/>
        <property type="gene ID" value="SAMN05444003_2921"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009276">
        <property type="term" value="C:Gram-negative-bacterium-type cell wall"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016655">
        <property type="term" value="F:oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009399">
        <property type="term" value="P:nitrogen fixation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022904">
        <property type="term" value="P:respiratory electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006814">
        <property type="term" value="P:sodium ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00429">
        <property type="entry name" value="NqrE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003667">
        <property type="entry name" value="NqrDE/RnfAE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010967">
        <property type="entry name" value="NqrE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30335:SF1">
        <property type="entry name" value="PTHR30335:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02508">
        <property type="entry name" value="Rnf-Nqr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006102">
        <property type="entry name" value="NQR_DE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01940">
        <property type="entry name" value="nqrE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 10" id="KW-0406">Ion transport</keyword>
    <keyword evidence="8 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-0520">NAD</keyword>
    <keyword evidence="9" id="KW-0535">Nitrogen fixation</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0915">Sodium</keyword>
    <keyword evidence="10" id="KW-0739">Sodium transport</keyword>
    <keyword evidence="4 10" id="KW-1278">Translocase</keyword>
    <keyword evidence="3 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 10" id="KW-0813">Transport</keyword>
    <keyword evidence="7 10 11" id="KW-0830">Ubiquinone</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="79"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="110"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="144"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="176"/>
            <end position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH36793.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="202" mass="21414" checksum="FC5F0463815A6E00" modified="2017-03-15" version="1">MEGYLALAVKAIFVENLALAFFLGMCTFIAVSKKISTAIGLGISVMIVQAITVPANNLILNYLLAPGALAWAGFPDVDLTFLGLISYIGVIAALVQILEMVLDKYFPPLYNALGVFLPLITVNCAILGGSLFMVERGYDFGESVTYGLSSGFGWALAITAMAGVREKLKYSDIPDGLQGLGITFITAGLMAMAFMSFSGVKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SHL9</accession>
    <name>A0A1M5SHL9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">D-amino-acid dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2979</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38087.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902411.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2979"/>
    <dbReference type="EnsemblBacteria" id="SHH38087">
        <property type="protein sequence ID" value="SHH38087"/>
        <property type="gene ID" value="SAMN05444003_2979"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="domain" description="DAO" evidence="2">
        <location>
            <begin position="6"/>
            <end position="394"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH38087.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="414" mass="45223" checksum="742153BD95FC6285" modified="2017-03-15" version="1">MAKHPIIVVGAGIVGVSTAIWLQRFGHRVVLMDRDAPGEGASFGNAGLIAQWAVTPVTTPGLWRDMPNYLINPQSPLFVEWGYLPKMLPWLGRFLAQATDGKTQTYADQVAPLLLDAVDQHRSLIAGTAAESFVRDSKLSYAYRSQAEFEKDAYAWALKRRCGFEPQMVLGADVRDAEPILGPDIGCLAVLEGQGHVMDPGRYVKALAKHFEKDGGAFVRATVQGIGRQGGAVTHVDTDQGRFDCNRLVVTAGIWSKELMQALGLKVQLETERGYHLVFENPSEMPKNPMMHVKGKFGVNPMNVGLRCAGMVELGSHTSGPSDAPLNLLRENAKKAFPTLTYSNVKEWMGFRPSTPDSLPLIGEIENSGIYTGFGHQHVGLTAGPKTGRLLAQMIDKQPPNIQMDAYLPARYLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SJH9</accession>
    <name>A0A1M5SJH9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Cytochrome c3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_3000</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38550.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902439.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH38550">
        <property type="protein sequence ID" value="SHH38550"/>
        <property type="gene ID" value="SAMN05444003_3000"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036280">
        <property type="entry name" value="Multihaem_cyt_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012286">
        <property type="entry name" value="Tetrahaem_cytochrome"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14537">
        <property type="entry name" value="Cytochrom_c3_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48695">
        <property type="entry name" value="SSF48695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0249">Electron transport</keyword>
    <keyword evidence="2" id="KW-0349">Heme</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012296576" evidence="6">
        <location>
            <begin position="22"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrom_c3_2" evidence="7">
        <location>
            <begin position="44"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF14537"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH38550.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="221" mass="24525" checksum="3EC825E4EBF793D7" modified="2017-03-15" version="1">MTPQHIKYAALLLLIPFGALAVSAFQNQTVLRTVAHGPIQVDHANLGCSDCHIAPDATWRQQIQANLRYVVGARSEAVDFGYHPVTSDTCLGCHERPNERHPIYRFREARFQDAQEIVDATSCLGCHTEHTNERAFTQVDFCVACHGDLELKTDPLDVSHLQLIKDENWGSCLGCHDFHGNHAYEAPKLLDAAFDVDALEAYLADGPNPYGTEKLYEAKGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SLA6</accession>
    <name>A0A1M5SLA6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Histidinol dehydrogenase</fullName>
            <shortName evidence="4">HDH</shortName>
            <ecNumber evidence="4">1.1.1.23</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">hisD</name>
        <name evidence="11" type="ORF">SAMN05444003_3035</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the sequential NAD-dependent oxidations of L-histidinol to L-histidinaldehyde and then to L-histidine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>H2O + L-histidinol + 2 NAD(+) = 3 H(+) + L-histidine + 2 NADH</text>
            <dbReference type="Rhea" id="RHEA:20641"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57595"/>
            <dbReference type="ChEBI" id="CHEBI:57699"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.1.1.23"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4 9">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="4 9">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 9/9.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 5 10">Belongs to the histidinol dehydrogenase family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.23" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH39324.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902563.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3035"/>
    <dbReference type="EnsemblBacteria" id="SHH39324">
        <property type="protein sequence ID" value="SHH39324"/>
        <property type="gene ID" value="SAMN05444003_3035"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00014"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004399">
        <property type="term" value="F:histidinol dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06572">
        <property type="entry name" value="Histidinol_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01024">
        <property type="entry name" value="HisD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001692">
        <property type="entry name" value="Histidinol_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022695">
        <property type="entry name" value="Histidinol_DH_monofunct"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012131">
        <property type="entry name" value="Hstdl_DH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21256">
        <property type="entry name" value="PTHR21256"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00815">
        <property type="entry name" value="Histidinol_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000099">
        <property type="entry name" value="Histidinol_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00083">
        <property type="entry name" value="HOLDHDRGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00069">
        <property type="entry name" value="hisD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00611">
        <property type="entry name" value="HISOL_DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="4" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="1 4 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 7" id="KW-0520">NAD</keyword>
    <keyword evidence="3 4 5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4 9" id="KW-0862">Zinc</keyword>
    <feature type="active site" description="Proton acceptor" evidence="4 6">
        <location>
            <position position="327"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="4 6">
        <location>
            <position position="328"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4 7">
        <location>
            <position position="130"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 7">
        <location>
            <position position="191"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 7">
        <location>
            <position position="214"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 8">
        <location>
            <position position="237"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 8 9">
        <location>
            <position position="259"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4 8 9">
        <location>
            <position position="262"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4 8">
        <location>
            <position position="328"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 8 9">
        <location>
            <position position="361"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4 8">
        <location>
            <position position="415"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 8 9">
        <location>
            <position position="420"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR000099"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000099-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000099-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000099-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000099-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU004175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH39324.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="434" mass="45857" checksum="C61030173B78F814" modified="2017-03-15" version="1">MPQFLSTNDPDFEAGFAALLSAKREDSPDVDAVVADIIADVRARGDAAVLELTAKFDRLEIDAAGMAFSDAEIEAACASVSEADRVALELAAERIRAYHERQMPEDARWEDEAGASLGWRWTAVSAAGLYVPGGLATYPSSVLMNAIPAKVAGVERLAMVVPTPDGEVNPLVLLAAKISGVDEIHRIGGAQAVAALAYGTQTIAPVDKITGPGNAFVAAAKRRVFGKVGIDMIAGPSEILVIADADNDPDWIALDMLSQAEHDESAQALLITDDEGFGQRVAEAIEARLETLERRTIAGASWRDFGAVITVRDMDEAVALSDRIAPEHLELCVADAEGMAAKIRHAGAIFIGAWTPEAIGDYVGGPNHVLPTARSARFSSGLSVMEFLKRTTLARMTPDALAAIGPAAETLAISESLEAHGLSVRARLDKLNRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SYG7</accession>
    <name>A0A1M5SYG7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3178</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH43233.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH43233">
        <property type="protein sequence ID" value="SHH43233"/>
        <property type="gene ID" value="SAMN05444003_3178"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012657762" evidence="1">
        <location>
            <begin position="26"/>
            <end position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH43233.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="169" mass="18230" checksum="CBFBC44D3DE29D38" modified="2017-03-15" version="1">MRPKLNLTFALALCATISLVAPVHAACRTFNNSLEEISWLTDEFPASVSVLHPSIDAYDGESAIRIAQIMLASLELMEADQNTPVRAAALHLIMLETLLWDAEEPARGIYLGLGGNLAEDFGLPDMEANEVFRCSLLCEEGGLNRCVETKGGPRPWVGVKPPLVGRVGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T2F1</accession>
    <name>A0A1M5T2F1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Manganese/iron transport system ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_3206</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH44974.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902838.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3206"/>
    <dbReference type="EnsemblBacteria" id="SHH44974">
        <property type="protein sequence ID" value="SHH44974"/>
        <property type="gene ID" value="SAMN05444003_3206"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="9"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="42"/>
            <end position="49"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH44974.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="287" mass="31588" checksum="198A55A7657C0B26" modified="2017-03-15" version="1">MDARVDTGIFAHDVTVTYRNGHTALWDASFDVPRGTVTALVGVNGAGKSTLFKAIMGFVPTAKGEILLLGRSVKQALKENLVSYVPQSEEVDWAFPVLVEDVVMMGRYGHMGFLRRASASDHEAVDCALERVNMTAYRTRQIGELSGGQRKRVFLARALAQDGQVILLDEPFTGVDVKTEEQIVALLKELRDEGRVMLVSTHNLGSVPEFCDRTILVKGTILGHGPTETTFTRENLEMAFGGVLRHFTLGGDTLHDDDDGRTVTILTDDERPFVQYGEKTQTQESNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T328</accession>
    <name>A0A1M5T328_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3211</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45098.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3211"/>
    <dbReference type="EnsemblBacteria" id="SHH45098">
        <property type="protein sequence ID" value="SHH45098"/>
        <property type="gene ID" value="SAMN05444003_3211"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH45098.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="69" mass="7481" checksum="8A33C3260D1A6A50" modified="2017-03-15" version="1">MLTAHGAGDHMQLVHLYTQAADMREAAGEVDAACFFLTHAYVFALEQGAEEAVALNKRLADYGRAELIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T4Z1</accession>
    <name>A0A1M5T4Z1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Beta-N-acetylhexosaminidase</fullName>
            <ecNumber evidence="3">3.2.1.52</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Beta-N-acetylhexosaminidase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">N-acetyl-beta-glucosaminidase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_3235</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Hydrolysis of terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides.</text>
            <dbReference type="EC" id="3.2.1.52"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the glycosyl hydrolase 20 family.</text>
    </comment>
    <dbReference type="EC" id="3.2.1.52" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45660.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902890.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3235"/>
    <dbReference type="EnsemblBacteria" id="SHH45660">
        <property type="protein sequence ID" value="SHH45660"/>
        <property type="gene ID" value="SAMN05444003_3235"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004563">
        <property type="term" value="F:beta-N-acetylhexosaminidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102148">
        <property type="term" value="F:N-acetyl-beta-D-galactosaminidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.379.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025705">
        <property type="entry name" value="Beta_hexosaminidase_sua/sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015883">
        <property type="entry name" value="Glyco_hydro_20_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029018">
        <property type="entry name" value="Hex-like_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015882">
        <property type="entry name" value="HEX_bac_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22600">
        <property type="entry name" value="PTHR22600"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00728">
        <property type="entry name" value="Glyco_hydro_20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02838">
        <property type="entry name" value="Glyco_hydro_20b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00738">
        <property type="entry name" value="GLHYDRLASE20"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55545">
        <property type="entry name" value="SSF55545"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_hydro_20b" evidence="9">
        <location>
            <begin position="170"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_hydro_20" evidence="8">
        <location>
            <begin position="224"/>
            <end position="566"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="99"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012663"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00030512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00033000"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02838"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH45660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="595" mass="65479" checksum="581A223C5EEE05CF" modified="2017-03-15" version="1">MKYDCQIVGDELLCAITSDQDLAAPVFCFSGMAPLEPVRGGTLIKSVGSYTEVQLPDLAKGKEHKATIKYQAGYKPANRAWKPLGPYLRVGGDIIELPPTEAGRRVPPRTEHSELEGLPLAPQPETWAPSEGVLEADGFAFEDDALSAVSALAQRQGMLFKGTMPIIIETGELETDAYEIEFTPQGVRIIANSYGGRFYAGITLLTLLQQGPIPCGRITDSPRFAWRGQHLDTARHYYEPDTILSLLDLMAILKLNRFHWHFADDEAFRLEVACLPDLWQKTALRGDGQTMPGLFSGAPVQGGSYSIETAKQIIARAKELNIEILPEIETPAHALCITTLYPETLDSTDNGAERSVQGYERNAMNPAMPKTWDIVEALITEIAEIFPFGHIHLGCDELAEDTWMSSPKARALMEQHDLQTTMDLQGWTMYRFAAFARSKSLRPAAWEEAAQGKNGGIGHDAILFSWTGQGPGLEAARAGYDVVMTPAQQVYLDMAHTSDPDDWGASWAAFVDLPDTINWDPVPDADLSDRIIGVQGTFWSEFTTQDDQIWPMLMPRMLGVAAMCWERDKPSIETVAALAGYYSVSSSGEIEISAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T5B1</accession>
    <name>A0A1M5T5B1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Tagatose-bisphosphate aldolase noncatalytic subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3245</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Carbohydrate metabolism.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45878.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902904.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3245"/>
    <dbReference type="EnsemblBacteria" id="SHH45878">
        <property type="protein sequence ID" value="SHH45878"/>
        <property type="gene ID" value="SAMN05444003_3245"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00094"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012062">
        <property type="entry name" value="GatZ/KbaZ-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08013">
        <property type="entry name" value="GatZ_KbaZ-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF009264">
        <property type="entry name" value="TagBP_ald_AgaZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH45878.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="409" mass="44177" checksum="3E3F83181504A197" modified="2017-03-15" version="1">MVEVLRDIIARNRAGEVIAVPSVCSAHPDVLRASLGLAKRLGQPVVIEATSNQVNQDGGYMGMTPADFVAYVHGFADEVGTDRHAIIFGGDHLGTQAWRDQAAEAAMEKAKVLVADYVAAGFEKIHLDCSEGCAGEAAQLTDEITADRSAVLAKISAKQADDLLFVVGTEVPPPGGARLDEDGVFPPTDPNAARDTLAAHEATFGSLASNIGGLVVQPGVEFSPTAVHHMPVDRDPHILAALSDRPTICLEAHSTDYQVDAVYPRLAELGFAFQKVGPALTFSYREALYALDQIRSDAGQLEAAMEQEMLRQPKYWQGHYSGSPEELREQRHSGLADRIRYYWPTQGAQDAVAALLEDCGNGLSDAQLSNVFDDKTLERAENLCGAQARRLIDAHIELALEPYFFLETP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T5H3</accession>
    <name>A0A1M5T5H3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="11">ATP-binding cassette, subfamily C, LapB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_3251</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46011.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3251"/>
    <dbReference type="EnsemblBacteria" id="SHH46011">
        <property type="protein sequence ID" value="SHH46011"/>
        <property type="gene ID" value="SAMN05444003_3251"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017750">
        <property type="entry name" value="ATPase_T1SS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005074">
        <property type="entry name" value="Peptidase_C39"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221">
        <property type="entry name" value="PTHR24221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03375">
        <property type="entry name" value="type_I_sec_LssB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50990">
        <property type="entry name" value="PEPTIDASE_C39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="163"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="196"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="279"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="304"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="385"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase C39" evidence="10">
        <location>
            <begin position="9"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="167"/>
            <end position="440"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="479"/>
            <end position="714"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="513"/>
            <end position="520"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50990"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH46011.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="715" mass="75557" checksum="C896E248D217C7BA" modified="2017-03-15" version="1">MRQKEWALDGQPRDVLAAALGSAMLSDGRDVNAVTLKDGLPLPPDGKLTPQLAVRAAEREGYRAALVRLRLKDIPKAVLPAVLFLQGRGACALLDQDSDGQCLVGWPERGSGTFRIDQSELAEAYAGHALLLRASVANDASNTEAEGPKGHWLWSTLRRHWPAYLQVALASALVNVLALATPLFTMNVYDRVFPNAALVTLWSLVAGVGIALTFDAFLKWVRARVVDNTGRRIDLAVSSAIFQHLSAIRADRVPGQAGSLANTLKDYEQVVEFFSSQTLATLMDLCFAVFFIAVIFYIGGPLAWPPALALGFVTLVGLLSLWPLRRNAQNNRAAASAKTGVAVESLAEAETLRAVSGHGRMQGRWESLVAEAATTQSRSRSIATFATTVTGLAQQGASVGIVIIGVYLALEGQITMGAVIASMILSSRALAPTAALSGLFVRGSFALSTLKALNEYMSIPSDGDGRKMGASEASGAGAIELNDLGLTYPGAQVPALSGITAAIGTGERVALIGPVGSGKTSLVRVLSGLWPASEGLVLLDGINIAQMSPPALRDQVQVVQQEAVLFTGTLAENIAFGKPGATEIEIVAAARAAGVDKIAAEHPDGFAMKVGERGRTLSGGQRQLIALARALIHSPRVLVLDEPTSAMDMQSERILIDSLARVVEQRRMTLIIATHRMGLLELTDRTILMAKGKVLMDGPKGDVLARLDRQGQGAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T7J3</accession>
    <name>A0A1M5T7J3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CubicO group peptidase, beta-lactamase class C family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3280</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46709.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902962.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3280"/>
    <dbReference type="EnsemblBacteria" id="SHH46709">
        <property type="protein sequence ID" value="SHH46709"/>
        <property type="gene ID" value="SAMN05444003_3280"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001466">
        <property type="entry name" value="Beta-lactam-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00144">
        <property type="entry name" value="Beta-lactamase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Beta-lactamase" evidence="1">
        <location>
            <begin position="47"/>
            <end position="324"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00144"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH46709.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="343" mass="39439" checksum="439654C5A7BEFD71" modified="2017-03-15" version="1">MSNLEDEFLKLIETEFDKPNSNSILLSVRSGSGRVLFEATAGEGEIDSPYFVASISKMFTATVIMQLVEEGCLSLDDTIDEYLPHLRLEGIHVFRGTDYSHQLKVYQLLHQTSGLADYFAKGLDEDFKKNRDRLYSVEDVLDLIRGQSPFAAPDSGRSHYSDTNYQLLGALIEVVAERPLAELFAERIFARLEMADTYLFDHTIPREKEPLQFFCENTQLSLPLALTSERGAGGCVSTMQDNYRFLRGYFEGELFNKTYFERMTKWNRMFFPMHYGYGLWRFQLPRWLTLFQKMPEFIGHAGVNGAMAFYNPEKDLYITGTLNQIDDPARQFKFMPKIVGAVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T7M5</accession>
    <name>A0A1M5T7M5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">TRAP-type C4-dicarboxylate transport system, substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_3281</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial solute-binding protein 7 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46739.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902964.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3281"/>
    <dbReference type="EnsemblBacteria" id="SHH46739">
        <property type="protein sequence ID" value="SHH46739"/>
        <property type="gene ID" value="SAMN05444003_3281"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071702">
        <property type="term" value="P:organic substance transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018389">
        <property type="entry name" value="DctP_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038404">
        <property type="entry name" value="TRAP_DctP_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33376">
        <property type="entry name" value="PTHR33376"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03480">
        <property type="entry name" value="DctP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0574">Periplasm</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012160731" evidence="6">
        <location>
            <begin position="24"/>
            <end position="336"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH46739.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="336" mass="35726" checksum="0F43DABEE354917D" modified="2017-03-15" version="1">MNKLLSQTAVAAITLAFAGEALATEWNVSLWGKRRAFTEHVEKLAELVSEKTGGEFTLNLSYGGLSNNRENLDGISIGAFEMAQFCAGYHRDKNPTITVLELPFLGVESLEQEVALSLAVYNHPATVADLARWNATLLMPSPLPQYNIVGAGDAPAGLADFEGMTVRATGGIGKAMETIGAVPTSTTASEVRQAMDGGIVEAVSFAPHAHMSFGTIENATWWTTNLNPGTVNCPVVVNTDALDSLSDEHREALMGSIEESLNHYIANYNGATMDAWGPALDERGIERVTFSDDEIAAFKDAAAAPAAASWIEENAARGLPAQELYDMVTGMIAGES</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L198</accession>
    <name>A0A1M5L198_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, MarR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0044</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58864.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900322.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0044"/>
    <dbReference type="EnsemblBacteria" id="SHG58864">
        <property type="protein sequence ID" value="SHG58864"/>
        <property type="gene ID" value="SAMN05444003_0044"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13463">
        <property type="entry name" value="HTH_27"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="27"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG58864.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="173" mass="19857" checksum="7898954E73888B81" modified="2017-03-15" version="1">MSMHSALSDVPQSAGLSPERTAFMASYLEGLTLVERLHRLLLDVIKDEFERLGILEINPVQALLLFNVGDNEVTAGELKSRGYYQGSNVSYNLKKLVENGYMHHQRSEVDRRSVRVRLTQKGRDIRKIVAELFAKHSEGLVGRGVVDLMGMDDIVSCLRRIERYWTEQIRYIY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L1V6</accession>
    <name>A0A1M5L1V6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, Spx/MgsR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0054</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the ArsC family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59074.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900324.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0054"/>
    <dbReference type="EnsemblBacteria" id="SHG59074">
        <property type="protein sequence ID" value="SHG59074"/>
        <property type="gene ID" value="SAMN05444003_0054"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006660">
        <property type="entry name" value="Arsenate_reductase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30041">
        <property type="entry name" value="PTHR30041"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03960">
        <property type="entry name" value="ArsC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51353">
        <property type="entry name" value="ARSC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01282"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG59074.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="110" mass="11941" checksum="A2BEB4D706BE6956" modified="2017-03-15" version="1">MQVFALKSCDTCRKAVKALTAAGRSFEVVDVRADGVSGADLAAILDQFGEQAINKASTTWRGLDEAERVSAPLDLLKAHPTLMKRPVIRDGDQWTIGWKADVQSIWLGNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LDU7</accession>
    <name>A0A1M5LDU7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized conserved protein, UPF0335 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0236</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63187.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900344.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0236"/>
    <dbReference type="EnsemblBacteria" id="SHG63187">
        <property type="protein sequence ID" value="SHG63187"/>
        <property type="gene ID" value="SAMN05444003_0236"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046367">
        <property type="entry name" value="GapR-like_DNA-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10073">
        <property type="entry name" value="DUF2312"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF2312" evidence="2">
        <location>
            <begin position="17"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="21"/>
            <end position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF10073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG63187.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="89" mass="10034" checksum="A8FE1820204D2048" modified="2017-03-15" version="1">MSDESTNSEPSATTSVAAQELRQFVERIERLDAEKKDIMDAQKEVMAEAKGRGYDTKVLRKLIAIRKRDLNDLAEEEAVLDMYKAALGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LEN6</accession>
    <name>A0A1M5LEN6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Nitrate/nitrite transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0246</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63410.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898666.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0246"/>
    <dbReference type="EnsemblBacteria" id="SHG63410">
        <property type="protein sequence ID" value="SHG63410"/>
        <property type="gene ID" value="SAMN05444003_0246"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="27"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="57"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="157"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="191"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="224"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="271"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="322"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="150"/>
            <end position="344"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG63410.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="357" mass="39244" checksum="DD48FC50124CC4CE" modified="2017-03-15" version="1">MTAIDSHSLDVEARRARRFARITKADSWFRVLGLSWVTPIFRALAGDNPKAQMGEIWRLLGIPLTSICVFLLLWAALAPQVQTSLGAIPGPADVWEQVGELHQDAVREGEKEEAFYERQDARNAEHIANGEPDKVRDRTYTGKPTYYDQIWTSIKTVFFGFMIASIVAIPLGITAGLSPTANAAMNPLIQIFKPVSPLAWLPIVTMVVSAVYTTNDGMFSKSFLISAITVTLCSLWPTLINTALGVSSIDKDLVSVSRVLKMNTGSKITKLVLPSALPLIFTGLRLSLGVGWMVLIAAEMLAQNPGLGKFVWDEFQNGSSQSLARIMVAVFTIGIIGFLLDRVMYALQSMFTFTNNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LFS9</accession>
    <name>A0A1M5LFS9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Predicted dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0268</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63897.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900351.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0268"/>
    <dbReference type="EnsemblBacteria" id="SHG63897">
        <property type="protein sequence ID" value="SHG63897"/>
        <property type="gene ID" value="SAMN05444003_0268"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004104">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000683">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01408">
        <property type="entry name" value="GFO_IDH_MocA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02894">
        <property type="entry name" value="GFO_IDH_MocA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GFO_IDH_MocA" evidence="1">
        <location>
            <begin position="5"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="domain" description="GFO_IDH_MocA_C" evidence="2">
        <location>
            <begin position="144"/>
            <end position="362"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG63897.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="362" mass="39767" checksum="427C68618AAB2F43" modified="2017-03-15" version="1">MEQVKYGLIGCGMMGQEHVKNINLLPQGDVVAVYDLHRQLAEVSAELAGGAYVAKSLDDLLTRPDLDALVIVSPNFEHVGQLKQIVAKRPLPILCEKPLYTKPEDKADLDALFDGYPHPVWVAMEYRYMPPVAALIEQAEQATGGIAMLTIREHRFPFLPKIGDWNRFNENTGGTLVEKCCHFFDLMRLILKSEPVRVMASAGQAMNHLDERYDGRVPDIWDNGYVIVDFESGARAMLELCMFAEGSEFQEEIAAVGPKGKIECFVPGPGRFWPKALGKPPVPKLVISPRAPKGPLESEMPVDPTLLDAGDHNGSTYYQHMKFNAAVRGEGGIEVSLKDGARAVEIGLAAQKSAETGEAVKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LHH0</accession>
    <name>A0A1M5LHH0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 6">Alanine racemase</fullName>
            <ecNumber evidence="4 6">5.1.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_0289</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>L-alanine = D-alanine</text>
            <dbReference type="Rhea" id="RHEA:20249"/>
            <dbReference type="ChEBI" id="CHEBI:57416"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="EC" id="5.1.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 6 7">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="6">Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 6">Belongs to the alanine racemase family.</text>
    </comment>
    <dbReference type="EC" id="5.1.1.1" evidence="4 6"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64425.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900356.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0289"/>
    <dbReference type="EnsemblBacteria" id="SHG64425">
        <property type="protein sequence ID" value="SHG64425"/>
        <property type="gene ID" value="SAMN05444003_0289"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00042">
        <property type="reaction ID" value="UER00497"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008784">
        <property type="term" value="F:alanine racemase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030632">
        <property type="term" value="P:D-alanine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.37.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01201">
        <property type="entry name" value="Ala_racemase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000821">
        <property type="entry name" value="Ala_racemase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009006">
        <property type="entry name" value="Ala_racemase/Decarboxylase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011079">
        <property type="entry name" value="Ala_racemase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001608">
        <property type="entry name" value="Ala_racemase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020622">
        <property type="entry name" value="Ala_racemase_pyridoxalP-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029066">
        <property type="entry name" value="PLP-binding_barrel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00842">
        <property type="entry name" value="Ala_racemase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01168">
        <property type="entry name" value="Ala_racemase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00992">
        <property type="entry name" value="ALARACEMASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01005">
        <property type="entry name" value="Ala_racemase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50621">
        <property type="entry name" value="SSF50621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51419">
        <property type="entry name" value="SSF51419"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00492">
        <property type="entry name" value="alr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00395">
        <property type="entry name" value="ALANINE_RACEMASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6 7" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ala_racemase_C" evidence="9">
        <location>
            <begin position="221"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor; specific for D-alanine" evidence="6">
        <location>
            <position position="33"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor; specific for L-alanine" evidence="6">
        <location>
            <position position="242"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6 8">
        <location>
            <position position="128"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 8">
        <location>
            <position position="290"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="6 7">
        <location>
            <position position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013089"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR600821-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR600821-52"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM01005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG64425.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="345" mass="36917" checksum="794279AE2399A91B" modified="2017-03-15" version="1">MSTGHLTIDLDALVANWRALDAKTNCETAAVIKADGYGLGSGKVASALAKAGARKFFVAVAEEGAAVRQALGEGPEINVFSGHMRGDTDMIGDLGLTPMLNSIDQVTRHLEALPGHAFGLQLDTGMNRLGMEWDEWAAIAQLALAQRPTLVMSHLACADEPDHPMNAYQLDVFHQMTDGISTPRSLAATGGILLGKDYHFDLCRPGVGLYGGLPFTEARDVVRMDLPVIQIRSLEEGEVVGYGNSWQCKRPSKIATVSAGYADGIIRAMSGKATFWHEDTPCPLVGRVSMDLITVDVTDLRETPQALTFLGPQQGVDDLANAAGTIGYEILTSLGGRYSRRYKGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LIR4</accession>
    <name>A0A1M5LIR4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="17">Uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">SAMN05444003_0310</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>NAD(+) + precorrin-2 = 2 H(+) + NADH + sirohydrochlorin</text>
            <dbReference type="Rhea" id="RHEA:15613"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:58351"/>
            <dbReference type="ChEBI" id="CHEBI:58827"/>
            <dbReference type="EC" id="1.3.1.76"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="13">Porphyrin-containing compound metabolism; siroheme biosynthesis; precorrin-2 from uroporphyrinogen III: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Porphyrin-containing compound metabolism; siroheme biosynthesis; sirohydrochlorin from precorrin-2: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the precorrin methyltransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64846.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898755.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0310"/>
    <dbReference type="EnsemblBacteria" id="SHG64846">
        <property type="protein sequence ID" value="SHG64846"/>
        <property type="gene ID" value="SAMN05444003_0310"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00262">
        <property type="reaction ID" value="UER00211"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043115">
        <property type="term" value="F:precorrin-2 dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051266">
        <property type="term" value="F:sirohydrochlorin ferrochelatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004851">
        <property type="term" value="F:uroporphyrin-III C-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019354">
        <property type="term" value="P:siroheme biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd11642">
        <property type="entry name" value="SUMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1010.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000878">
        <property type="entry name" value="4pyrrol_Mease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035996">
        <property type="entry name" value="4pyrrol_Methylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014777">
        <property type="entry name" value="4pyrrole_Mease_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014776">
        <property type="entry name" value="4pyrrole_Mease_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006366">
        <property type="entry name" value="CobA/CysG_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012409">
        <property type="entry name" value="Sirohaem_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019478">
        <property type="entry name" value="Sirohaem_synthase_dimer_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006367">
        <property type="entry name" value="Sirohaem_synthase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003043">
        <property type="entry name" value="Uropor_MeTrfase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10414">
        <property type="entry name" value="CysG_dimeriser"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00590">
        <property type="entry name" value="TP_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036426">
        <property type="entry name" value="Sirohaem_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53790">
        <property type="entry name" value="SSF53790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01469">
        <property type="entry name" value="cobA_cysG_Cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01470">
        <property type="entry name" value="cysG_Nterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00839">
        <property type="entry name" value="SUMT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="10" id="KW-0456">Lyase</keyword>
    <keyword evidence="5 17" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="12" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="9" id="KW-0520">NAD</keyword>
    <keyword evidence="8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="6 17" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="CysG_dimeriser" evidence="16">
        <location>
            <begin position="150"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="domain" description="TP_methylase" evidence="15">
        <location>
            <begin position="221"/>
            <end position="428"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="14">
        <location>
            <position position="249"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="14">
        <location>
            <position position="271"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00025705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PIRSR" id="PIRSR036426-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF00590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF10414"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="SHG64846.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="465" mass="49586" checksum="9068818C0C5D2EE3" modified="2017-03-15" version="1">MDHFPIFMAVEGRRIVLSGGGDAALAKLRLILKTTAKITVIAEEAAPEIHAWAAEGKLTYIPRAMEAGDAMCAVLFYAANEDDVEDARVAALAHADGAKVNIVDNLADSQFITPAIVDRDPVTIAIGTEGAAPVLARAIKADLEERLPSSLGLLARIGKTFRHAVEVLPMGRKRREFWSNYYFKNGPEAVEAEGAEGVLPALGALLDTHVMAKGAEGHVDLVGAGPGDPELLTLKARKALDKADVVIHDRLVTPEILELARREAIIIDAGKEGFGQSTKQSDIDSLIIEHAMSGHHVVRLKAGDPTVFGRLDEEIEACEAAGVSWRVVPGITAASAAVASIGQSLTKRNRNSAVRLITGHDTKGYADQDWRILAEPGQVAAIYMGKKAARFIQGRLLMHGADPATPVTIIENVSRTDQRIISTTLAEMEPTISNAGLTGPALTFYGLAPRDAVAASYDIKEQELA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LJY5</accession>
    <name>A0A1M5LJY5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, DeoR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0336</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65338.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898781.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0336"/>
    <dbReference type="EnsemblBacteria" id="SHG65338">
        <property type="protein sequence ID" value="SHG65338"/>
        <property type="gene ID" value="SAMN05444003_0336"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014036">
        <property type="entry name" value="DeoR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001034">
        <property type="entry name" value="DeoR_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037171">
        <property type="entry name" value="NagB/RpiA_transferase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018356">
        <property type="entry name" value="Tscrpt_reg_HTH_DeoR_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00455">
        <property type="entry name" value="DeoRC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08220">
        <property type="entry name" value="HTH_DeoR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00420">
        <property type="entry name" value="HTH_DEOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100950">
        <property type="entry name" value="SSF100950"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00894">
        <property type="entry name" value="HTH_DEOR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51000">
        <property type="entry name" value="HTH_DEOR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH deoR-type" evidence="4">
        <location>
            <begin position="3"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51000"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG65338.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="266" mass="28964" checksum="502D78C49DACD69E" modified="2017-03-15" version="1">MHETERHTVILSAVQDRPFVSVVDLCGLTGASEATIRRDIATLHVQKKLRRVRGGAEAIAPPQFVGLAGRTFAVNETIRIEEKQAIARAAAELCEDGDPIIVNGGTTTFQMVHPLANRRMQVFTNSFPIAEHLLKHSKNTVMLPGGAIYREQNIILSPFENDVTRNFYARRMFMSAQGIGPLGVMEGDPLLIQAEEKLMGQADELIVLVDSSKFDARSSLVLCPLDRIDTVITDGGISDRAAAMLEAAEINLIVAEWNAAAETGST</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LN34</accession>
    <name>A0A1M5LN34_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 13">Dihydrolipoyl dehydrogenase</fullName>
            <ecNumber evidence="3 13">1.8.1.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">SAMN05444003_0356</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 13">
            <text>(R)-N(6)-dihydrolipoyl-L-lysyl-[protein] + NAD(+) = (R)-N(6)-lipoyl-L-lysyl-[protein] + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:15045"/>
            <dbReference type="Rhea" id="RHEA-COMP:10474"/>
            <dbReference type="Rhea" id="RHEA-COMP:10475"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:83099"/>
            <dbReference type="ChEBI" id="CHEBI:83100"/>
            <dbReference type="EC" id="1.8.1.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11 13">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
        <text evidence="11 13">Binds 1 FAD per subunit.</text>
    </comment>
    <comment type="miscellaneous">
        <text evidence="13">The active site is a redox-active disulfide bond.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 13">Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.</text>
    </comment>
    <dbReference type="EC" id="1.8.1.4" evidence="3 13"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65753.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898816.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0356"/>
    <dbReference type="EnsemblBacteria" id="SHG65753">
        <property type="protein sequence ID" value="SHG65753"/>
        <property type="gene ID" value="SAMN05444003_0356"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004148">
        <property type="term" value="F:dihydrolipoyl dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045454">
        <property type="term" value="P:cell redox homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016156">
        <property type="entry name" value="FAD/NAD-linked_Rdtase_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006258">
        <property type="entry name" value="Lipoamide_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001100">
        <property type="entry name" value="Pyr_nuc-diS_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004099">
        <property type="entry name" value="Pyr_nucl-diS_OxRdtase_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012999">
        <property type="entry name" value="Pyr_OxRdtase_I_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02852">
        <property type="entry name" value="Pyr_redox_dim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000350">
        <property type="entry name" value="Mercury_reductase_MerA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55424">
        <property type="entry name" value="SSF55424"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01350">
        <property type="entry name" value="lipoamide_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00076">
        <property type="entry name" value="PYRIDINE_REDOX_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5 11 13" id="KW-0274">FAD</keyword>
    <keyword evidence="4 13" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="7 11 13" id="KW-0520">NAD</keyword>
    <keyword evidence="11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 13" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9 13" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="15">
        <location>
            <begin position="6"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="domain" description="Pyr_redox_dim" evidence="14">
        <location>
            <begin position="345"/>
            <end position="453"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="10">
        <location>
            <position position="443"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="52"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="180"/>
            <end position="187"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="203"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="270"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="310"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="disulfide bond" description="Redox-active" evidence="12">
        <location>
            <begin position="43"/>
            <end position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001492"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012608"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR000350-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR000350-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR000350-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU003692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF02852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="SHG65753.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="464" mass="49754" checksum="6542BAC7B0A0D2DE" modified="2017-03-15" version="1">MAGKTFDLIVIGAGPGGYVAAIRGAQLGMNVAIIEREHMGGICLNWGCIPTKALLRSSEVFHLMHRAKEFGLSADKLGFDLDAVVKRSRQVAGQLSGGIGHLMKKNKITTIMGEATLPAKGKVSVKTDKGTEELTAKNIVLATGARARELPGLEADGDLVWTYKHALQPARMPKKLLVIGSGAIGIEFASFYNTMGADTTVVEVMDRVLPVEDEEISKFAKKQFVKQGMKIMEKSMVKQLDRAKGKVTAHIETGGKVEKHEFDTVISAVGIVGNVEGLGLEGLGVKIDRTHVVTDEYCRTGVDGLYAIGDIAGAPWLAHKASHEGVMVAELIAGKHPHPVKPESIAGCTYCHPQVASVGFTEAQAKEKGYDIKVGRFPFIGNGKAIALGEPEGVIKTVFDAKTGELLGAHMVGAEVTELIQGYVVGRQLETTEEDLMHTVFPHPTLSEMMHESVLDAYGQVIHM</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LTI4</accession>
    <name>A0A1M5LTI4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Cytochrome c-type biogenesis protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_0473</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Possible subunit of a heme lyase.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the CcmH/CycL/Ccl2/NrfF family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68442.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898986.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0473"/>
    <dbReference type="EnsemblBacteria" id="SHG68442">
        <property type="protein sequence ID" value="SHG68442"/>
        <property type="gene ID" value="SAMN05444003_0473"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.640">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005616">
        <property type="entry name" value="CcmH/CycL/Ccl2/NrfF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038297">
        <property type="entry name" value="CcmH/CycL/NrfF/Ccl2_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03918">
        <property type="entry name" value="CcmH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0349">Heme</keyword>
    <keyword evidence="4 5" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5011829224" description="Cytochrome c-type biogenesis protein" evidence="5">
        <location>
            <begin position="18"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="101"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010342"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU364112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG68442.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="147" mass="16418" checksum="E0DE171BAE979343" modified="2017-03-15" version="1">MRWLAIALMLWAAPLWAVEPNEMLDDPALEERAREISQLVRCPVCQNESIDESHATVARDLRVIIRERLVAGDTDQQVLDYLSARFGEFVLLTPPRDGANLILWLAAPAMFLVALGIGWAAIQRKPKAADEGLSQDEQAELDKILNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LUG0</accession>
    <name>A0A1M5LUG0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7">Glutamate racemase</fullName>
            <ecNumber evidence="2 7">5.1.1.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">murI</name>
        <name evidence="8" type="ORF">SAMN05444003_0466</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Provides the (R)-glutamate required for cell wall biosynthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>L-glutamate = D-glutamate</text>
            <dbReference type="Rhea" id="RHEA:12813"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:29986"/>
            <dbReference type="EC" id="5.1.1.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the aspartate/glutamate racemases family.</text>
    </comment>
    <dbReference type="EC" id="5.1.1.3" evidence="2 7"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68279.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898980.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0466"/>
    <dbReference type="EnsemblBacteria" id="SHG68279">
        <property type="protein sequence ID" value="SHG68279"/>
        <property type="gene ID" value="SAMN05444003_0466"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008881">
        <property type="term" value="F:glutamate racemase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00258">
        <property type="entry name" value="Glu_racemase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015942">
        <property type="entry name" value="Asp/Glu/hydantoin_racemase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001920">
        <property type="entry name" value="Asp/Glu_race"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018187">
        <property type="entry name" value="Asp/Glu_racemase_AS_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004391">
        <property type="entry name" value="Glu_race"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21198:SF2">
        <property type="entry name" value="PTHR21198:SF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01177">
        <property type="entry name" value="Asp_Glu_race"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53681">
        <property type="entry name" value="SSF53681"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00923">
        <property type="entry name" value="ASP_GLU_RACEMASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 7" id="KW-0133">Cell shape</keyword>
    <keyword evidence="6 7" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="5 7" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4 7" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="7"/>
            <end position="8"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="39"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="71"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="195"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="7">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="7">
        <location>
            <position position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001602"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00258"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG68279.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="270" mass="29234" checksum="0BDC6FD23F30939F" modified="2017-03-15" version="1">MAVGVFDSGLGGLTVLNAVQDTLPDLPLVYFADSAHAPYGVRDADDIYDLTTSAVSQMFDQGCDLVILACNTASAAALRRMQEGWVPKDKRVLGVFVPMIEALTERQWGDNSPPREVETKHVALFATPATVASRAFQRELAFRAIGVDVEAQACGGVVDAIEDGDMILAEALVRSHVDALKRKMPKPDAAILGCTHYPLMHKTFQDALGADVKVFSQANLVGDSLKDYLDRRPEFIGGGEGTTYLTTGDPQRVSDRATQFLRRDISFISA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LV71</accession>
    <name>A0A1M5LV71_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Exodeoxyribonuclease-3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0476</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the DNA repair enzymes AP/ExoA family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68519.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898989.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0476"/>
    <dbReference type="EnsemblBacteria" id="SHG68519">
        <property type="protein sequence ID" value="SHG68519"/>
        <property type="gene ID" value="SAMN05444003_0476"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008853">
        <property type="term" value="F:exodeoxyribonuclease III activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09086">
        <property type="entry name" value="ExoIII-like_AP-endo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004808">
        <property type="entry name" value="AP_endonuc_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037493">
        <property type="entry name" value="ExoIII-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43250">
        <property type="entry name" value="PTHR43250"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="SSF56219"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00633">
        <property type="entry name" value="xth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51435">
        <property type="entry name" value="AP_NUCLEASE_F1_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endo/exonuclease/phosphatase" evidence="2">
        <location>
            <begin position="4"/>
            <end position="250"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007092"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG68519.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="259" mass="29342" checksum="144A997FB8DFAF09" modified="2017-03-15" version="1">MKIATFNINGVKARIGALTDWLNESQPDVAVLQEIKSVDEAFPREHFEDLGYRVETHGQKGFNGVAIFSKLPLEDVTRGLPGDESDEQARWIEATVMGDTPVRVCGLYLPNGNPAPGPKYDYKLAWMERLKARAEALLAEEQPALMCGDYNIIPQAEDAKRPEAWTEDALYRMESRESYRRILNLGFTEAFRATTHGDGHYSFWDYQAGAWDRNDGIRIDHFLLTPQCADLLNSCWIEAEVRGRERPSDHVPVWVDLAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LXE6</accession>
    <name>A0A1M5LXE6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Ribonuclease E</fullName>
            <shortName evidence="5">RNase E</shortName>
            <ecNumber evidence="5">3.1.26.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rne</name>
        <name evidence="8" type="ORF">SAMN05444003_0500</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>Endonucleolytic cleavage of single-stranded RNA in A- and U-rich regions.</text>
            <dbReference type="EC" id="3.1.26.12"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="5">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="5">Binds 2 Zn(2+) ions per homotetramer.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homotetramer formed by a dimer of dimers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell inner membrane</location>
            <topology evidence="5">Peripheral membrane protein</topology>
            <orientation evidence="5">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the RNase E/G family. RNase E subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.1.26.12" evidence="5"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69053.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0500"/>
    <dbReference type="EnsemblBacteria" id="SHG69053">
        <property type="protein sequence ID" value="SHG69053"/>
        <property type="gene ID" value="SAMN05444003_0500"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009898">
        <property type="term" value="C:cytoplasmic side of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004521">
        <property type="term" value="F:endoribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008995">
        <property type="term" value="F:ribonuclease E activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006402">
        <property type="term" value="P:mRNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006364">
        <property type="term" value="P:rRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008033">
        <property type="term" value="P:tRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00970">
        <property type="entry name" value="RNase_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019307">
        <property type="entry name" value="RNA-bd_AU-1/RNase_E/G"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028878">
        <property type="entry name" value="RNase_E"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004659">
        <property type="entry name" value="RNase_E/G"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003029">
        <property type="entry name" value="S1_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30001">
        <property type="entry name" value="PTHR30001"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10150">
        <property type="entry name" value="RNase_E_G"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00575">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00757">
        <property type="entry name" value="RNaseEG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="2 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="1 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0540">Nuclease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="5" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="5" id="KW-0819">tRNA processing</keyword>
    <keyword evidence="5" id="KW-0820">tRNA-binding</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="S1 motif" evidence="7">
        <location>
            <begin position="35"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="95"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="region of interest" description="Required for zinc-mediated homotetramerization and catalytic activity" evidence="5">
        <location>
            <begin position="563"/>
            <end position="566"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="675"/>
            <end position="908"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="95"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="148"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="6">
        <location>
            <begin position="163"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="213"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="745"/>
            <end position="772"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="781"/>
            <end position="804"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="817"/>
            <end position="852"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="462"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="505"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="563"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="566"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00575"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG69053.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="908" mass="100361" checksum="5BA08BDE2DDD32AA" modified="2017-03-15" version="1">MLIDATHAEETRVVVVDGNKVEEFDFESQFKRQLAGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLAFSEIHPDYYQIPVADREALIAEEKAYAESLRAAEEEEEAKPKPKRRRRRSKTAAAEAANEDAVATAEVEEQTADASEETEASESNNDAKAADDTPVEDAEAADAPEVEAVEPEEETSGDIAGMETIDLGDESDSEPIVDASDDEEDSPKADATSKDDRIESVKEDDTDEVRPVRKPRPKRYKIQEVINVRQILLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAADRKKLKEIANSMDVPEGAGLIIRTAGSQRTKTEIKRDYEYLQRMWEQIRELTLKSIAPAAIYEEGDLIKRSIRDLYSKEIEEVIVAGDEGYRTAKDFMKMIMPSHAKNVKHYTEQLPLYARYQVEGFLNGMFNPTVQLPSGGYIVIGITEALVAIDVNSGRATKEGSIEQTALKTNLEAADEVARQLRLRDLAGLIVIDFIDMDERRNNNAVEKRFKDRLKTDRARIQVGRISGFGLMEMSRQRLRPGMLEATTQMCPHCHGTGLLRSDDNVALSILRSLEEEGVRGRSKEVLVKAPISIANFLMNGKREHIADIEARYGMSVRIECDPTLVSPDYNIEKFKTATRVVPEATVVVSAESLMEEGIDLDAAVADEEEAPTEENKPKRKRRRRRRRRGGGANAENQQNAEGQNADTAEGGEGDADGSEAVEAAEAPADANAAEVTEEKPKRSRSRKKPAPKAEETSSEATDAEVSIESDTAEEKPKARRSRKKPLKAEAEAGEAAAEATPQDEAPQEETKPKRTRSRKKTEPEAVEAEVEATTEEKPKRKRTTRKKAEPKAEAPVLETAAAEPVVETAEPAPAVEDAPAAEAKPKRKGWWSLNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M434</accession>
    <name>A0A1M5M434_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Carbonic anhydrase or acetyltransferase, isoleucine patch superfamily</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0631</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72074.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899195.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0631"/>
    <dbReference type="EnsemblBacteria" id="SHG72074">
        <property type="protein sequence ID" value="SHG72074"/>
        <property type="gene ID" value="SAMN05444003_0631"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001451">
        <property type="entry name" value="Hexapep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00132">
        <property type="entry name" value="Hexapep"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="SSF51161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG72074.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="173" mass="18027" checksum="2E3E596691B66273" modified="2017-03-15" version="1">MIYELGDISPQIDGSVWVAPGAHVMGNVVLEEKSSVWFGSTLRGDNEEIRVGAGSNVQENCVLHTDLGFPLQIGAGCTIGHKAMLHGCTIGDNSLIGMGATVLNGAVIGKNCLIGAGALIPEGKTIPDGSLVMGMPGKVVRELTEQQIEGLKASAIGYQLNAKRFAKDLKELG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M578</accession>
    <name>A0A1M5M578_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Microcystinase C</fullName>
            <shortName evidence="1">MlrC</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0647</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC).</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="1">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase M81 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG72474">
        <property type="protein sequence ID" value="SHG72474"/>
        <property type="gene ID" value="SAMN05444003_0647"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009197">
        <property type="entry name" value="MlrC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010799">
        <property type="entry name" value="MlrC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015995">
        <property type="entry name" value="MlrC_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07364">
        <property type="entry name" value="DUF1485"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07171">
        <property type="entry name" value="MlrC_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF012702">
        <property type="entry name" value="UCP012702"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1485" evidence="3">
        <location>
            <begin position="3"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="domain" description="MlrC_C" evidence="2">
        <location>
            <begin position="296"/>
            <end position="469"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR012702"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF07364"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG72474.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="486" mass="53596" checksum="CCEFD946FE29EDB2" modified="2017-03-15" version="1">MHLFMATLSTETNTFSPVPTILSDYEAYYLRHGTATQDAPNLMTEALHVWRQRAEALHWSVTESLTAIAEPAGLTTATTFDALKNEILDDLRNSAKPDVILLQLHGAMVAEDEPDCEGRIVSEIRALCPDAVIGVALDLHCHLRPRLLEHADLLIAFREYPHDDAAARAKELFSLAKRQLSGEISPQIGMFDCRMVSLFLTKTDPMRAFKKEMEAAEDIPGVLSVTLGHGFPWADLPETGARMLVTTNGDLPLAQETAKALGQRFFELRDEVAMAYSELDEALDQVEATSSGPIVLADMSDNSGAGAPGDSTYVLEAILERGLRNLASAIYWDPDAVQACVAMGEGAEIELDVGGKVEVASGRPVNIRGRIMAIKSGLKQHLGPALEPLGRMVWLRLQGEIDLVINDLRIQVYHPEVFEQMGIDLSQKHLVVVKSLFHFYTSFAEIASDVIFCATPGRVNPNTARIEFKQRDLNFWPRVHDPFALD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MGR4</accession>
    <name>A0A1M5MGR4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Phosphoribosylglycinamide formyltransferase</fullName>
            <ecNumber evidence="3">2.1.2.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">5'-phosphoribosylglycinamide transformylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">GAR transformylase</fullName>
            <shortName evidence="3">GART</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">purN</name>
        <name evidence="5" type="ORF">SAMN05444003_0824</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the transfer of a formyl group from 10-formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>(6S)-10-formyltetrahydrofolate + N(1)-(5-phospho-beta-D-ribosyl)glycinamide = (6S)-5,6,7,8-tetrahydrofolate + H(+) + N(2)-formyl-N(1)-(5-phospho-beta-D-ribosyl)glycinamide</text>
            <dbReference type="Rhea" id="RHEA:15053"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="ChEBI" id="CHEBI:57454"/>
            <dbReference type="ChEBI" id="CHEBI:143788"/>
            <dbReference type="ChEBI" id="CHEBI:147286"/>
            <dbReference type="EC" id="2.1.2.2"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 3">Purine metabolism; IMP biosynthesis via de novo pathway; N(2)-formyl-N(1)-(5-phospho-D-ribosyl)glycinamide from N(1)-(5-phospho-D-ribosyl)glycinamide (10-formyl THF route): step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the GART family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.1.2.2" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76510.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899511.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0824"/>
    <dbReference type="EnsemblBacteria" id="SHG76510">
        <property type="protein sequence ID" value="SHG76510"/>
        <property type="gene ID" value="SAMN05444003_0824"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00126"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004644">
        <property type="term" value="F:phosphoribosylglycinamide formyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd08645">
        <property type="entry name" value="FMT_core_GART"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01930">
        <property type="entry name" value="PurN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002376">
        <property type="entry name" value="Formyl_transf_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036477">
        <property type="entry name" value="Formyl_transf_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004607">
        <property type="entry name" value="GART"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001555">
        <property type="entry name" value="GART_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00551">
        <property type="entry name" value="Formyl_trans_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53328">
        <property type="entry name" value="SSF53328"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00639">
        <property type="entry name" value="PurN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00373">
        <property type="entry name" value="GART"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Formyl_trans_N" evidence="4">
        <location>
            <begin position="3"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="region of interest" description="5'-phosphoribosylglycinamide binding" evidence="3">
        <location>
            <begin position="13"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="3">
        <location>
            <position position="110"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="66"/>
        </location>
        <ligand>
            <name>(6S)-10-formyltetrahydrofolate</name>
            <dbReference type="ChEBI" id="CHEBI:57454"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="108"/>
        </location>
        <ligand>
            <name>(6S)-10-formyltetrahydrofolate</name>
            <dbReference type="ChEBI" id="CHEBI:57454"/>
        </ligand>
    </feature>
    <feature type="site" description="Raises pKa of active site His" evidence="3">
        <location>
            <position position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01930"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG76510.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="202" mass="21597" checksum="359C5ECCEB122340" modified="2017-03-15" version="1">MTKRVAILISGGGSNMVTLVKAMRAGGYGEPVLVGSNRPDAGGLNKAAELGVPTVSIDHKAFGKDRRTFEDTLHAALMDAAPDVICLAGFMRVLSGDFITPWEGRMLNIHPSLLPKYKGLDTHQRALDAGDNEHGCTVHEVTAKLDDGPILGQAIVSVRAGDSADDLAARVLEQEHKLYPAALERFLSKNAKTVTIDARDRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MIG1</accession>
    <name>A0A1M5MIG1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Ribosomal RNA large subunit methyltransferase E</fullName>
            <ecNumber evidence="4">2.1.1.166</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">23S rRNA Um2552 methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">rRNA (uridine-2'-O-)-methyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rlmE</name>
        <name evidence="4" type="synonym">ftsJ</name>
        <name evidence="4" type="synonym">rrmJ</name>
        <name evidence="8" type="ORF">SAMN05444003_0842</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>S-adenosyl-L-methionine + uridine(2552) in 23S rRNA = 2'-O-methyluridine(2552) in 23S rRNA + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42720"/>
            <dbReference type="Rhea" id="RHEA-COMP:10202"/>
            <dbReference type="Rhea" id="RHEA-COMP:10203"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:74478"/>
            <dbReference type="EC" id="2.1.1.166"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.166" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76947.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0842"/>
    <dbReference type="EnsemblBacteria" id="SHG76947">
        <property type="protein sequence ID" value="SHG76947"/>
        <property type="gene ID" value="SAMN05444003_0842"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008650">
        <property type="term" value="F:rRNA (uridine-2'-O-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01547">
        <property type="entry name" value="RNA_methyltr_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002877">
        <property type="entry name" value="RNA_MeTrfase_FtsJ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015507">
        <property type="entry name" value="rRNA-MeTfrase_E"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01728">
        <property type="entry name" value="FtsJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005461">
        <property type="entry name" value="23S_rRNA_mtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 4 8" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="3 4 5" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="4 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="FtsJ" evidence="7">
        <location>
            <begin position="59"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="223"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="4 5">
        <location>
            <position position="199"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="91"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="93"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="119"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="135"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="159"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01547"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR005461-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG76947.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="244" mass="26614" checksum="CFE2211ABFBADD50" modified="2017-03-15" version="1">MKADGDMVKKPGKKNTSGRGQRDLTVKVKSARGRKMSSTLWLQRQLNDPYVKRAQKEGYRGRAAFKILELDEKFRFLVPGARVVDLGCAPGGWCQVAVKRVNALGTRTSKAQGRVLGIDLQEVEPIAGAELHQLDFMDDDADEKVKEWLGGKADVVMSDMAAASSGHKQTDHLRIIALCETAAYFAFDVLEQGGTFVAKVLAGGAEGDLQKLLKEKFEKVANVKPPSSRSDSSEKFVVATGFRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MLX0</accession>
    <name>A0A1M5MLX0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">GST-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0877</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GST superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77763.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899584.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0877"/>
    <dbReference type="EnsemblBacteria" id="SHG77763">
        <property type="protein sequence ID" value="SHG77763"/>
        <property type="gene ID" value="SAMN05444003_0877"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006749">
        <property type="term" value="P:glutathione metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010987">
        <property type="entry name" value="Glutathione-S-Trfase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036282">
        <property type="entry name" value="Glutathione-S-Trfase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004045">
        <property type="entry name" value="Glutathione_S-Trfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004046">
        <property type="entry name" value="GST_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00043">
        <property type="entry name" value="GST_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02798">
        <property type="entry name" value="GST_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47616">
        <property type="entry name" value="SSF47616"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50405">
        <property type="entry name" value="GST_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50404">
        <property type="entry name" value="GST_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GST N-terminal" evidence="3">
        <location>
            <begin position="39"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="domain" description="GST C-terminal" evidence="4">
        <location>
            <begin position="133"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="259"/>
            <end position="282"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU003494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG77763.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="282" mass="31714" checksum="8E9B46F3F3B1C8E5" modified="2017-03-15" version="1">MTYTPPKVWTWDAESGGQFANINRPIAGATHDKELPVGEHDLQLYSLATPNGVKVTVMLEELLESGHEAEYDAWLINIQEGDQFGSGFVDINPNSKIPAMLDKSNGVKVFETGSILIYLAEKYGAFLSTDIAKRTETLNWLFWLHGSAPYLGGGFGHFYAYAPEKFEYPINRFAMEAKRQLDVLDRNLAERQFLAGDEYTIADMATAPWYGALVKGLVYDAAEFLDVASYTNVIRWTDEINARPAFKRGKMVNRAWGEPSEQLHERHSADDFNTKTQDKVGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MM42</accession>
    <name>A0A1M5MM42_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9 11">Acyl carrier protein</fullName>
            <shortName evidence="9">ACP</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">acpP</name>
        <name evidence="13" type="ORF">SAMN05444003_0901</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 9 11">Carrier of the growing fatty acid chain in fatty acid biosynthesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="8">Glycolipid biosynthesis; KDO(2)-lipid A biosynthesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="9 11">Lipid metabolism; fatty acid biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="PTM">
        <text evidence="9">4'-phosphopantetheine is transferred from CoA to a specific serine of apo-ACP by AcpS. This modification is essential for activity because fatty acids are bound in thioester linkage to the sulfhydryl of the prosthetic group.</text>
    </comment>
    <comment type="PTM">
        <text evidence="11">4'-phosphopantetheine is transferred from CoA to a specific serine of apo-ACP by acpS.</text>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the acyl carrier protein (ACP) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78315.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899613.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0901"/>
    <dbReference type="EnsemblBacteria" id="SHG78315">
        <property type="protein sequence ID" value="SHG78315"/>
        <property type="gene ID" value="SAMN05444003_0901"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00094"/>
    <dbReference type="UniPathway" id="UPA00360"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000036">
        <property type="term" value="F:acyl carrier activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031177">
        <property type="term" value="F:phosphopantetheine binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036104">
        <property type="term" value="P:Kdo2-lipid A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1200.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01217">
        <property type="entry name" value="Acyl_carrier"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036736">
        <property type="entry name" value="ACP-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003231">
        <property type="entry name" value="Acyl_carrier"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020806">
        <property type="entry name" value="PKS_PP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009081">
        <property type="entry name" value="PP-bd_ACP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006162">
        <property type="entry name" value="Ppantetheine_attach_site"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20863">
        <property type="entry name" value="PTHR20863"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00550">
        <property type="entry name" value="PP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00823">
        <property type="entry name" value="PKS_PP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47336">
        <property type="entry name" value="SSF47336"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00517">
        <property type="entry name" value="acyl_carrier"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50075">
        <property type="entry name" value="CARRIER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00012">
        <property type="entry name" value="PHOSPHOPANTETHEINE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 9" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="5 9" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="3 9" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="6 9" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="2 9 10" id="KW-0596">Phosphopantetheine</keyword>
    <keyword evidence="4 9" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Carrier" evidence="12">
        <location>
            <begin position="2"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="modified residue" description="O-(pantetheine 4'-phosphoryl)serine" evidence="9 10">
        <location>
            <position position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022450"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00024328"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01217"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00258"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU003545"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHG78315.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="77" mass="8332" checksum="EBDED8E2BC890687" modified="2017-03-15" version="1">MSDVADRVRKIVVEHLGVEEDKVVEGASFIDDLGADSLDTVELVMAFEEEFGIEIPDDAAETIQSFGDAVKFISEAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MNI4</accession>
    <name>A0A1M5MNI4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Glutamine synthetase</fullName>
            <ecNumber evidence="7">6.3.1.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_0924</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>ATP + L-glutamate + NH4(+) = ADP + H(+) + L-glutamine + phosphate</text>
            <dbReference type="Rhea" id="RHEA:16169"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.1.2"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="3">Oligomer of 12 subunits arranged in the form of two hexameric ring.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the glutamine synthetase family.</text>
    </comment>
    <dbReference type="EC" id="6.3.1.2" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78831.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899648.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0924"/>
    <dbReference type="EnsemblBacteria" id="SHG78831">
        <property type="protein sequence ID" value="SHG78831"/>
        <property type="gene ID" value="SAMN05444003_0924"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004356">
        <property type="term" value="F:glutamate-ammonia ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006542">
        <property type="term" value="P:glutamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009399">
        <property type="term" value="P:nitrogen fixation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008147">
        <property type="entry name" value="Gln_synt_b-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036651">
        <property type="entry name" value="Gln_synt_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014746">
        <property type="entry name" value="Gln_synth/guanido_kin_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008146">
        <property type="entry name" value="Gln_synth_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027303">
        <property type="entry name" value="Gln_synth_gly_rich_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004809">
        <property type="entry name" value="Gln_synth_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027302">
        <property type="entry name" value="Gln_synth_N_conserv_site"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00120">
        <property type="entry name" value="Gln-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03951">
        <property type="entry name" value="Gln-synt_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01230">
        <property type="entry name" value="Gln-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54368">
        <property type="entry name" value="SSF54368"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55931">
        <property type="entry name" value="SSF55931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00653">
        <property type="entry name" value="GlnA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00180">
        <property type="entry name" value="GLNA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00181">
        <property type="entry name" value="GLNA_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-0535">Nitrogen fixation</keyword>
    <keyword evidence="7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Gln-synt_C" evidence="8">
        <location>
            <begin position="102"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="modified residue" description="O-AMP-tyrosine" evidence="5">
        <location>
            <position position="397"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009897"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011258"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR604809-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU004356"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM01230"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG78831.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="468" mass="52242" checksum="7E044680EA9F1221" modified="2017-03-15" version="1">MDNKALLKLIKDEDVAYVDIRFTDPRGKLQHVTVVADLVDEDFLEEGFMFDGSSIAGWKSIDQSDMKLMPDASTGYLDPFYAEKTVCVHCSVVEPDTGESYERCPRSTAQRAEAYLKSSGIGDAAYFGPEAEFFIFDDVRYSVAMNKVSYQVDAIDGAWNTDTEYEMGNMGHRPGVKGGYFPVPPTDDAQDMRGEMLSTMKRMGMKVDKHHHEVASCQHELGLIFGTLTHQADELQKYKYVIHNTAQAYGKSATFMPKPIAGDNGTGMHVNMSIWKDGKPLFAGDKYADLSQEALYFIGGVLKHAKALNAITNPSTNSYKRLIPGFEAPVLRAYSARNRSGCVRIPWAESPKAKRVEARFPDPSANPYLCFSALMMAGLDGIKNKIDPGASSDKDLYDLPPEELAEIPTVCGSLREALEALEADHDFLLEGGVFTKDQLEGYMELKWEEVYEYEHCPHPVEYKLYYSC</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MNP7</accession>
    <name>A0A1M5MNP7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Choline dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_0917</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the GMC oxidoreductase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78662.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899638.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0917"/>
    <dbReference type="EnsemblBacteria" id="SHG78662">
        <property type="protein sequence ID" value="SHG78662"/>
        <property type="gene ID" value="SAMN05444003_0917"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016614">
        <property type="term" value="F:oxidoreductase activity, acting on CH-OH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012132">
        <property type="entry name" value="GMC_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000172">
        <property type="entry name" value="GMC_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007867">
        <property type="entry name" value="GMC_OxRtase_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11552">
        <property type="entry name" value="PTHR11552"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05199">
        <property type="entry name" value="GMC_oxred_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00732">
        <property type="entry name" value="GMC_oxred_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000137">
        <property type="entry name" value="Alcohol_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00623">
        <property type="entry name" value="GMC_OXRED_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00624">
        <property type="entry name" value="GMC_OXRED_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GMC_OxRdtase_N" evidence="4">
        <location>
            <begin position="80"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="domain" description="GMC_OxRdtase_N" evidence="5">
        <location>
            <begin position="253"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="82"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="217"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010790"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000137-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS00623"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS00624"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG78662.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="531" mass="58138" checksum="CBAD3E336592ED28" modified="2017-03-15" version="1">MEADFIVVGAGSAGCVLANRLSQNPQNRVVLLEAGGRDTNPWIHIPVGYFKTIHNPKVDWCYKTEPDPGLNGRSIEWPRGKVLGGSSSLNGLLYVRGQPEDYDRWRQMGNIGWAWDDVLPLFKRAENNERGADPFHGNEGPLSVSNMRIQRPITDAWVAAAQAAGYPFNPDYNGEEQEGVGFFQLTAKNGRRCSAAVAYLNPVKSRENLEIITHAQVDKVVISEGRATGVVYSDRSGNQKTVTARKDIILSGGSINTPQILMLSGIGEAPQLAENGIDVVKDLPGVGKNLQDHLQARLVYKCNEPTLNDEVSSLYGQARIGLKYLMFRSGPMTMAASLATGFMKTRPEVATPDIQFHVQPLSAENPGKGADKFSAFTMSVCQLRPESKGEIRLRGNNPREYPKIIPNYLSTETDCQTIVEGVKIARKIARHAPLTSKISEEYRPNDTLEMDDYEGTLDWARNNTASIYHPTGTCKMGTGKDAVVDARLKVHGIEGLRVADCSIMPEIVSGNTNAPAIMIGEKASDLVLEDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MNZ9</accession>
    <name>A0A1M5MNZ9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Biotin transporter</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0927</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the BioY family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899652.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0927"/>
    <dbReference type="EnsemblBacteria" id="SHG78917">
        <property type="protein sequence ID" value="SHG78917"/>
        <property type="gene ID" value="SAMN05444003_0927"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015225">
        <property type="term" value="F:biotin transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003784">
        <property type="entry name" value="BioY"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34295">
        <property type="entry name" value="PTHR34295"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02632">
        <property type="entry name" value="BioY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF016661">
        <property type="entry name" value="BioY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="2 3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="27"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="74"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="98"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="131"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="171"/>
            <end position="193"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR016661"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG78917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="198" mass="20801" checksum="650F549E91DDD858" modified="2017-03-15" version="1">MALAMNDKVLVEAFGANEGTALRIKQAVMVVLGIVAIWIAAKVQVFLPGNPVPITLQTFAVLTIGAAYGPRLGLLTIVGYLVLGAMGASVFAGEKAGLTYMMGGTGGYLVGYALAALALGYAARLGWDRNILLMAVAMFIGNALIYIPGLLWLHQFASGWEQTLQWGITPFLIGDALKLVLAALVVPGLWKLIGDARA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MPJ1</accession>
    <name>A0A1M5MPJ1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 12">Sec translocon accessory complex subunit YajC</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="primary">yajC</name>
        <name evidence="13" type="ORF">SAMN05444003_0948</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 12">The SecYEG-SecDF-YajC-YidC holo-translocon (HTL) protein secretase/insertase is a supercomplex required for protein secretion, insertion of proteins into membranes, and assembly of membrane protein complexes. While the SecYEG complex is essential for assembly of a number of proteins and complexes, the SecDF-YajC-YidC subcomplex facilitates these functions.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5 12">Part of the SecDF-YidC-YajC translocase complex. The SecDF-YidC-YajC translocase forms a supercomplex with SecYEG, called the holo-translocon (HTL).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cell inner membrane</location>
            <topology evidence="3">Single-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 12">Belongs to the YajC family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79314.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899693.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0948"/>
    <dbReference type="EnsemblBacteria" id="SHG79314">
        <property type="protein sequence ID" value="SHG79314"/>
        <property type="gene ID" value="SAMN05444003_0948"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003849">
        <property type="entry name" value="Preprotein_translocase_YajC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33909">
        <property type="entry name" value="PTHR33909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02699">
        <property type="entry name" value="YajC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01853">
        <property type="entry name" value="YAJCTRNLCASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01323">
        <property type="entry name" value="YajC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00739">
        <property type="entry name" value="yajC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="11 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-0653">Protein transport</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0811">Translocation</keyword>
    <keyword evidence="9 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10 12" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="7 12" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="6"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004377"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00006742"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011718"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00014962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU366028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHG79314.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="93" mass="10329" checksum="1616ADD2183ABAD7" modified="2017-03-15" version="1">MEGIQSIIPLILIFGIMYFLLIRPQQKKMKEHQAMVAALRRGDRVVTQGGIKGKVTKVKEGENEIEVEIAQGVTIKVVQSTIANVENKTEPAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MSL5</accession>
    <name>A0A1M5MSL5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Ribonuclease J</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0987</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80072.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899730.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0987"/>
    <dbReference type="EnsemblBacteria" id="SHG80072">
        <property type="protein sequence ID" value="SHG80072"/>
        <property type="gene ID" value="SAMN05444003_0987"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10710">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011108">
        <property type="entry name" value="RMMBL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042173">
        <property type="entry name" value="RNase_J_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041636">
        <property type="entry name" value="RNase_J_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001587">
        <property type="entry name" value="RNase_J_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07521">
        <property type="entry name" value="RMMBL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17770">
        <property type="entry name" value="RNase_J_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01292">
        <property type="entry name" value="UPF0036"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="Lactamase_B" evidence="3">
        <location>
            <begin position="17"/>
            <end position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG80072.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="553" mass="60188" checksum="A536B2F111F5FADC" modified="2017-03-15" version="1">MTSRLIYLPLGGAGEIGMNAYVYGYGPKDAERLIVVDLGVTFPDMDGTPGVDLILPDISWLEERKAMIDGIFITHAHEDHVGAVGHYWERLGAPVYARKFTANIAARKLEEHGHPDGVLTVVGPYPETRDVGPFKVSFVPISHSIPESSGLIIDTPEGRVIHSGDFKIDKTPVVGEAFDESLWAEIAKDGVKALVCDSTNIFFKAEGRSEASIAGEVEELMRDAPGMVVATTFASNIARLKTLAVAADKAGRSVCLLGRAMRRMVEAATETGLLKDFPSMVSPEDAQNIPREHLLLLVTGSQGERRAASAQLANGKYLGLTMKEGDTFLFSSKTIPGNERGVIRIMNQFSEMGVDVVEDDTRYHVSGHANRPDLERMHEIIQPQILVPMHGEHRHLREHVKIGNSKGLTGIVAVNGMMIDLSGNAPTVAEYIETGRTYLDGTVQIGALDGIVRERIKMALNGHVIVTLIVDENDEPLGEPWVEVVGLAETGTSNAALVEVLEEDLGQFLMRAEGKTLRDDVKLEKELRSIARRTTQAEIGKKPEVAVIVSRLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MWG0</accession>
    <name>A0A1M5MWG0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Peptide/nickel transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_1062</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899799.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1062"/>
    <dbReference type="EnsemblBacteria" id="SHG81638">
        <property type="protein sequence ID" value="SHG81638"/>
        <property type="gene ID" value="SAMN05444003_1062"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025966">
        <property type="entry name" value="OppC_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12911">
        <property type="entry name" value="OppC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="20"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="90"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="128"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="159"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="211"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="268"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="7">
        <location>
            <begin position="88"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG81638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="300" mass="32605" checksum="B486611DBAAA7FBF" modified="2017-03-15" version="1">MMSRFFQSDGVYYFLRTPSAIVAAIIVVIIVGGAIFAPWIAQSNPYDLASFSLMDGLLPPVWQGGDPRFLLGTDNQGRDMVSSILYGARLSLFIGFMSMAIATVLGVGLGLAAGYYGGRFDAIVMRIADVQLALPAILTALLIDGISRGLLPPSVQQDLRVVVLIIAIALSLWVNFARTARASVFVERNKDYVQAAMIMGQRPSRVMLRHILPNIMGPLLVIMTVDLASAILLEATLSFLGIGLPADSPSLGTLIRIGMQFQLSGEWWILWVPTIVLAALVVSINILGDFLRDIFNPRLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MWH0</accession>
    <name>A0A1M5MWH0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Peptide/nickel transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_1063</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81654.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899800.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1063"/>
    <dbReference type="EnsemblBacteria" id="SHG81654">
        <property type="protein sequence ID" value="SHG81654"/>
        <property type="gene ID" value="SAMN05444003_1063"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045621">
        <property type="entry name" value="BPD_transp_1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19300">
        <property type="entry name" value="BPD_transp_1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="100"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="133"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="185"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="238"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="291"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="7">
        <location>
            <begin position="94"/>
            <end position="311"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG81654.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="324" mass="36305" checksum="0E9C2E9B0D1931C3" modified="2017-03-15" version="1">MAYFILKRLFQSIFVMLAVAFLAFSLFRFVGDPVSQMTGVETSVQDQEQLREELGLNDPFVVQFYRFTTDILKGDFGYSYRTRQPVNEMIASRIPATIELGITALMISLIVGIPAGVYTALRTRGFATQTILLTTLVGVSIPTFVIGIVLIFLFGVTLGWMPTFGRGGTVDLGGWTTSFLTLEGWSYLILPAITLGVYQLTLTMRLVRAEMMEVMRSDYIRFATARGIPQRKLHYRHALGNTMIPVITIIGLQFGGVIAFSIVTESVFQWPGMGLLFLESVRFVDIPVMGVYLVVIAFFFVLVNLVVDILYLMIDPRLRVKEAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MY86</accession>
    <name>A0A1M5MY86_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Pyruvate, phosphate dikinase</fullName>
            <ecNumber evidence="4">2.7.9.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Pyruvate, orthophosphate dikinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">SAMN05444003_1094</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + phosphate + pyruvate = AMP + diphosphate + H(+) + phosphoenolpyruvate</text>
            <dbReference type="Rhea" id="RHEA:10756"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.7.9.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 10">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the PEP-utilizing enzyme family.</text>
    </comment>
    <dbReference type="EC" id="2.7.9.1" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82300.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1094"/>
    <dbReference type="EnsemblBacteria" id="SHG82300">
        <property type="protein sequence ID" value="SHG82300"/>
        <property type="gene ID" value="SAMN05444003_1094"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050242">
        <property type="term" value="F:pyruvate, phosphate dikinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006090">
        <property type="term" value="P:pyruvate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008279">
        <property type="entry name" value="PEP-util_enz_mobile_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000121">
        <property type="entry name" value="PEP_util_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023151">
        <property type="entry name" value="PEP_util_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036637">
        <property type="entry name" value="Phosphohistidine_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010121">
        <property type="entry name" value="Pyruvate_phosphate_dikinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_Kinase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040442">
        <property type="entry name" value="Pyrv_Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22931">
        <property type="entry name" value="PTHR22931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00391">
        <property type="entry name" value="PEP-utilizers"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02896">
        <property type="entry name" value="PEP-utilizers_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000853">
        <property type="entry name" value="PPDK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="SSF51621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52009">
        <property type="entry name" value="SSF52009"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00742">
        <property type="entry name" value="PEP_ENZYMES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13" id="KW-0418">Kinase</keyword>
    <keyword evidence="10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="13" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PEP-utilizers" evidence="11">
        <location>
            <begin position="395"/>
            <end position="477"/>
        </location>
    </feature>
    <feature type="domain" description="PEP-utilizers_C" evidence="12">
        <location>
            <begin position="493"/>
            <end position="842"/>
        </location>
    </feature>
    <feature type="active site" description="Tele-phosphohistidine intermediate" evidence="8">
        <location>
            <position position="428"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="8">
        <location>
            <position position="804"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="535"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="591"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9 10">
        <location>
            <position position="718"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="739"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="740"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="741"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9 10">
        <location>
            <position position="742"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00020138"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00032883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000853-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000853-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR000853-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF02896"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHG82300.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="849" mass="92061" checksum="D4C0673AA21DA6CE" modified="2017-03-15" version="1">MQKRTTFVEVTLITPTAAMSPAVHGNRAKCLQRLIRLEMPVPTTVALSFDAVSKIAAGDLPDMAQVMAPFGETPLLSVRPSSLSPDWGGPAAVLNIGMNDARLDTMKDTVGEAAATALYARFIHAYAIEVARLDPEVFELPAKPTADDLRLALETYEFEADEPFPQDPTEQLEAVLRSMARAWDGTTARLLREAKGAPADAGLGLVVQEMALGVGRDGECGSGVIQYVDSTTGKPQVTGRYLGQSQGRDALGDVEGAIYLTKDPRGRSLEDLSPVIFAELLAYRDLCRSRLREEMEVSFTIENGKLNILDAVKVQRSSRAEVQIAVALAEDGVIPREEAVLRVKPAALSEMLHRQVDPDAKRDVLVTGIAASPGAATGQIVLSANEAQASAARGEPCILVRRETTPEDIRGMNAAHAVLTVRGGVTSHAAVIGRGLGLPCVVGASDLSVNTRRGEIETPDGRILSEGDVITVDGTRGQVLAGAPKMLEAALDDAFQTLLSWADEFRDIGVRANADTPADAQTAKNFAAEGIGLCRTEHMFFEGDRLGMMREMIFAETEEDRRAVLERLLPLQRADMKELFSIMQGKPVCMRLFDMPLHEFLPFDKAGQRDLAASLALPLPDIVERVQALSEYNPMLGMRGIRQGIALPEIYEMQARAIFEATVDAAKDGINIVPEIMIPLISAMKEVELIKARIDAVAASVQAEQRAEFDFKLGVMVETPRAALRAEDIAEYSEFLSFGTNDLTQMTYGLSRDDAGRFMSTYVQQAVYEEDPFHTLDIEGVGELLSIGAERGRKGRKDVVLSICGEHGGSRTAIAFCRTEGFDYVSCSPFRVPLARLSAAQLALNERLM</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MZK4</accession>
    <name>A0A1M5MZK4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1096</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899827.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1096"/>
    <dbReference type="EnsemblBacteria" id="SHG82369">
        <property type="protein sequence ID" value="SHG82369"/>
        <property type="gene ID" value="SAMN05444003_1096"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045616">
        <property type="entry name" value="DUF6446"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20044">
        <property type="entry name" value="DUF6446"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG82369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="174" mass="18909" checksum="60D01AF833E78182" modified="2017-03-15" version="1">MGKVLGIMLVLSGLIAGGAMYYLQVYAFYEEVAVSEEDIVLTSLFSGEPEPILFENFAGIDSDSSPIRYRACFETPTSLALLTETYVIVDEPEPLVAPGWFDCFDAEQIGADLEDGTAIAFMGTENIQYGIDRIVAVYPDGRAYAWNEINACGEVVFDGDPVPEGCPTPPERAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MZM0</accession>
    <name>A0A1M5MZM0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Alkane 1-monooxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_1109</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Fe(3+)</name>
            <dbReference type="ChEBI" id="CHEBI:29034"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cell inner membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the fatty acid desaturase type 1 family. AlkB subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82677.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899836.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1109"/>
    <dbReference type="EnsemblBacteria" id="SHG82677">
        <property type="protein sequence ID" value="SHG82677"/>
        <property type="gene ID" value="SAMN05444003_1109"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03512">
        <property type="entry name" value="Alkane-hydroxylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033885">
        <property type="entry name" value="AlkB/XylM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005804">
        <property type="entry name" value="FA_desaturase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38674">
        <property type="entry name" value="PTHR38674"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00487">
        <property type="entry name" value="FA_desaturase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 10" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="7 10" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="12"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="61"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="88"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="126"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="199"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="domain" description="FA_desaturase" evidence="9">
        <location>
            <begin position="92"/>
            <end position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00487"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG82677.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="335" mass="37050" checksum="770638A401ABD835" modified="2017-03-15" version="1">MLRFYLATTLPALLIAIGAVLGGWWVALGLIFMTSLTFALDSLVNITPNENAETEFPAGDGLLVLIGTLHFVLMLLVVWTLANGSHSLAANIALFISAGLFFGQVSNSAAHELIHRSRRDLRQLGVWVYISILVGHHTSAHLLVHHRFVATSDDPNSAQLGESYYRYVARAWVGSFSKGFAAETQRLKSINRPNSQNPYWVYLTGGLAMLVLAFLIGGVAGLVAYTGLALYATAQLLLSDYVQHYGLSRTIDDNKAEPTTAFHSWDSPHWFSSSMMLNAPRHSQHHTRPMKPFTSLEPHSDGPMLPHSLPAMATLALLPSRWRKVMDHRALKWQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N3X5</accession>
    <name>A0A1M5N3X5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1175</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84258.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899894.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1175"/>
    <dbReference type="EnsemblBacteria" id="SHG84258">
        <property type="protein sequence ID" value="SHG84258"/>
        <property type="gene ID" value="SAMN05444003_1175"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG84258.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="254" mass="26374" checksum="A6B29AF1F6FE0816" modified="2017-03-15" version="1">MKIDGQLAIVTGGGSGLGAATARYLNGLGAQIAILDYDETRGAAVASEIGGRSYQVDVSNAEAVGAVVDQVSSDFGAAARIAVNCAGIAPAARVVGREGKMSTDIFEQTLRVNLMGTYNVMSHTARHMQMLDPEDTGERGVVINTASAAYQDGQLGQAAYAASKGGVAAMCLPVAREFAKTGIRCVAIAPGLFRTPMMEALPEETTAAITANIPFPDRLGDPAEFGQMVAQIVENPYLNGTTIRLDGAVRLPPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N6C6</accession>
    <name>A0A1M5N6C6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Methylmalonyl-CoA mutase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1214</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>adenosylcob(III)alamin</name>
            <dbReference type="ChEBI" id="CHEBI:18408"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85140.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899927.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1214"/>
    <dbReference type="EnsemblBacteria" id="SHG85140">
        <property type="protein sequence ID" value="SHG85140"/>
        <property type="gene ID" value="SAMN05444003_1214"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031419">
        <property type="term" value="F:cobalamin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004494">
        <property type="term" value="F:methylmalonyl-CoA mutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006159">
        <property type="entry name" value="Acid_CoA_mut_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016176">
        <property type="entry name" value="Cbl-dep_enz_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006158">
        <property type="entry name" value="Cobalamin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036724">
        <property type="entry name" value="Cobalamin-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006099">
        <property type="entry name" value="MeMalonylCoA_mutase_a/b_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006098">
        <property type="entry name" value="MMCoA_mutase_a_cat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02310">
        <property type="entry name" value="B12-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01642">
        <property type="entry name" value="MM_CoA_mutase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51703">
        <property type="entry name" value="SSF51703"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52242">
        <property type="entry name" value="SSF52242"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00640">
        <property type="entry name" value="acid_CoA_mut_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00641">
        <property type="entry name" value="acid_CoA_mut_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51332">
        <property type="entry name" value="B12_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00544">
        <property type="entry name" value="METMALONYL_COA_MUTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0846">Cobalamin</keyword>
    <keyword evidence="5" id="KW-0170">Cobalt</keyword>
    <keyword evidence="4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="B12-binding" evidence="6">
        <location>
            <begin position="578"/>
            <end position="708"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022628"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG85140.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="708" mass="76899" checksum="5146FC9E3C8B0E44" modified="2017-03-15" version="1">MTDKTKWEELAEKELRGRPLDDLTWNTLEGIPVKPLYTAEDTADLPHMGGIPGQEPYTRGVKATMYAGRPWTIRQYAGFSTAEESNAFYRKALAAGQQGVSVAFDLATHRGYDSDHPRVVGDVGKAGVAIDSVEDMKILFDGIPLDKVSVSMTMNGAVIPILANFIVAGEEQGHDKSVLAGTIQNDILKEFMVRNTYVYPPEPSMRIIADIIGYTADHMPKFNSISISGYHMQEAGANLVQELAFTIADGREYVRTAINAGMDVDKFAPRLSFFFAIGMNFFMEAAKLRAARLLWSRVMEEFNPQNPKSSMLRTHCQTSGVSLQEQDPYNNVVRTAYEAMAAALGGTQSLHTNALDEAIALPTEFAARIARNTQLILQEETGVTNVVDPLAGSYYVESLTHELAEAAWKLIEEVEEMGGMTKAVASGMPKLRIEESAATRQANIDRGTEVIVGVNKYRLAEEEPIDILDIDNAAVRDAQVARIEKTRAERDQAACDTALDEITRRANEGGNLLEAAVEASRARATVGEISMAMEKAFGRHRAEVKTLAGVYGAAYEGDEGFAAIQKSVEDFAEEEGRRPRMLVVKMGQDGHDRGAKVIATAFADIGFDVDVGPLFQTPEEAAQDAVDNDVHVIGISSQAAGHKTLAPKLVEALEAAGAGDILVICGGVIPQQDYQFLYDSGVKAIFGPGTNIPAAAEDILKLIREARS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N9X0</accession>
    <name>A0A1M5N9X0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Response regulator receiver modulated diguanylate cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1273</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86386.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900446.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1273"/>
    <dbReference type="EnsemblBacteria" id="SHG86386">
        <property type="protein sequence ID" value="SHG86386"/>
        <property type="gene ID" value="SAMN05444003_1273"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="4"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="3">
        <location>
            <begin position="318"/>
            <end position="456"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG86386.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="458" mass="50132" checksum="49F4D30F0F7F3C08" modified="2017-03-15" version="1">MTGKILILDSVATNRIVMKVKLAAARYETLTAATCKDALQLMEQDRPDLLLINLSDPVEDGHQFCKRLKTNPKFRDTAIVAIGIADTARVRFAALDAGVDEVLPHPISDALMLARIRGLLRRRIANLEWDIRNETSQALGFEEEVAPILAPAHLCLAPGSANRTSVLKNLFANLTQFRVSVRIGAGALATSAENAPGDVFVIDAWNIDACALVSDIYSRPSLRNSQIMVIAPKGRADIAVQALDFGAGEVVYDDISLNELSIRIDSLIQHKRRQDRQRKCVLSGLEAATLDPLTGLYNRRYAKTHLKSVAEQAFAKRESYALLIFDIDHFKQINDRFGHAHGDLVLKKVANCLEQNFRSLDLVARIGGEEFLVAMPETSLCQAELAAERVRETIGRESFDFDRSEGAINVTVSAGVAVDDVLGKCLTPPEVLFSKADAALYEAKASGRDKVALSEQAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NAM0</accession>
    <name>A0A1M5NAM0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Predicted arabinose efflux permease, MFS family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1285</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86594.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899988.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1285"/>
    <dbReference type="EnsemblBacteria" id="SHG86594">
        <property type="protein sequence ID" value="SHG86594"/>
        <property type="gene ID" value="SAMN05444003_1285"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="38"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="72"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="101"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="132"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="159"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="199"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="237"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="264"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="289"/>
            <end position="311"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="323"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="348"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="199"/>
            <end position="408"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG86594.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="408" mass="43714" checksum="0CCF5D3093EA1F07" modified="2017-03-15" version="1">MRMLISFAALFLSISLLQFSSGAVGPLDALTGLSFGFSTAEVGFLGSAHFLGFFIGCWWAPRLMGSVGHSRAFAIFAATGAIGLAAHVIVTSAAWWALFRIGSGICIAGCYTVIEAWLQAKVTNETRGRAMGTYRVVDMGTSLIAQFMIGALANLETYVAYNLLTILCCASLLPLALTKQTQPTTPTQTKLRPLMAWRASPLAVAGVLVAALSSASFRMVGPIYGQEVGLAASQIGYFLAAFVAGGALAQYPMGWLADKFDRRWVLIWLSVAAVASCAITVFTTQSGTWGIMLSAGLFGLTTFPIYSVAAAHAHDFATSDQRVELSAALMFFYAVGAIAAPYTSSRLIAAFGPSALFIMISVAHLILVVFGLTRMRVRDVPEDKTRYVYAPRTTFLIGRLLSRSRERK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NBM5</accession>
    <name>A0A1M5NBM5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">FAD/FMN-containing dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1301</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86852.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1301"/>
    <dbReference type="EnsemblBacteria" id="SHG86852">
        <property type="protein sequence ID" value="SHG86852"/>
        <property type="gene ID" value="SAMN05444003_1301"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.45.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.43.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016166">
        <property type="entry name" value="FAD-bd_PCMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016167">
        <property type="entry name" value="FAD-bd_PCMH_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016164">
        <property type="entry name" value="FAD-linked_Oxase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004113">
        <property type="entry name" value="FAD-linked_oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006094">
        <property type="entry name" value="Oxid_FAD_bind_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016171">
        <property type="entry name" value="Vanillyl_alc_oxidase_C-sub2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02913">
        <property type="entry name" value="FAD-oxidase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01565">
        <property type="entry name" value="FAD_binding_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55103">
        <property type="entry name" value="SSF55103"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51387">
        <property type="entry name" value="FAD_PCMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0274">FAD</keyword>
    <keyword evidence="1" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding PCMH-type" evidence="2">
        <location>
            <begin position="30"/>
            <end position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG86852.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="468" mass="49876" checksum="6CCF4D3E1017AAE1" modified="2017-03-15" version="1">MLNSVTDEFEAQLRAILPEGAFKSDTDGYFTESRGRWTGQGLVVAPSSTQEVSAVVKACNDAKVGVVPYGGGTGLVGGQILQDGAKPVVLSLERMIKVRDVYPTEDTMVVEAGAILASIQDEAERIGRLFPLSLASEGSARIGGLLSTNAGGLNVLRYGNARAQCLGLEVVLADGTVWNGLSRLHKDNTGYDLRDLMIGAEGTLGVITAAALKLSPRPASVGSAMIAVKGPAAALALLALAKERLAEGISAFELMHRQGFDFLDEVGPEYHAPLAETPEWTVLIDVGLPSGLQADEALVDLFEAALEADLVTDGVIAQSEAQREAFWFIRENIPEANRRIGSISSHDISIPLSVVPEFIKIGPEQLEKIGEFRINCFGHLGDGNLHYNVFPPKGLSRADFSSERDQIKEAVHDLAHEFSGSVSAEHGVGRLKVGDLERYSDPAKLTMMRAIKGALDPNGIMNPGAVLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NBU6</accession>
    <name>A0A1M5NBU6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 10">3-deoxy-D-manno-octulosonic acid transferase</fullName>
            <shortName evidence="10">Kdo transferase</shortName>
            <ecNumber evidence="4 10">2.4.99.12</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7 10">Lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">SAMN05444003_1288</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 10">Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP-Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>CMP-3-deoxy-beta-D-manno-octulosonate + lipid IVA (E. coli) = alpha-Kdo-(2-&gt;6)-lipid IVA + CMP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:28066"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:58603"/>
            <dbReference type="ChEBI" id="CHEBI:60364"/>
            <dbReference type="ChEBI" id="CHEBI:60377"/>
            <dbReference type="ChEBI" id="CHEBI:85987"/>
            <dbReference type="EC" id="2.4.99.12"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 10">Bacterial outer membrane biogenesis; LPS core biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cell inner membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the glycosyltransferase group 1 family.</text>
    </comment>
    <dbReference type="EC" id="2.4.99.12" evidence="4 10"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86649.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1288"/>
    <dbReference type="EnsemblBacteria" id="SHG86649">
        <property type="protein sequence ID" value="SHG86649"/>
        <property type="gene ID" value="SAMN05444003_1288"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00958"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043842">
        <property type="term" value="F:Kdo transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009244">
        <property type="term" value="P:lipopolysaccharide core region biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11720">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007507">
        <property type="entry name" value="Glycos_transf_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038107">
        <property type="entry name" value="Glycos_transf_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039901">
        <property type="entry name" value="Kdotransferase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42755">
        <property type="entry name" value="PTHR42755"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04413">
        <property type="entry name" value="Glycos_transf_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10" id="KW-0448">Lipopolysaccharide biosynthesis</keyword>
    <keyword evidence="10" id="KW-0472">Membrane</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 10 12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glycos_transf_N" evidence="11">
        <location>
            <begin position="33"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="8">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="9">
        <location>
            <position position="123"/>
        </location>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="9">
        <location>
            <position position="201"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000183"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003394"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004713"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012621"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00019077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00031445"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR639901-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR639901-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU365103"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF04413"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG86649.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="402" mass="43592" checksum="D6ADD01C21F4409B" modified="2017-03-15" version="1">MLLYRLVLPLIVTAVLCRSLIAWAKGRETTADVKERIRGPRQKGPSIWVHLSSVGEANAARPAILHLSKSHSVLVTTGTTTGRDAVRSWSFANVNAGLAPLDLVSATRRFLSKNDVTALIVIENELWPNRLLTAHKRDVPVILLNARMSASTMKTWSRFPKTAERIMSQVAAVFPQDQASADRFETLGAPAAKICPPFNLKELYAPVTTPLPEIAQSFERDQTVLAAATHEGEDEIVLAGLALAQKERPNLRLILAPRHPERGPSIKAMSENAGFATTLRSDRTTTNADVFVADSLGEMDWWYRASAVAFVGGSLVPKGGHTPYEPAAYRCQIIHGPHIDNFRSGYSELSKSQSVWQVTTPEELGQAMLSALAAGPATSPFQANGSAIFEQLDLLCGAPSAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NEV7</accession>
    <name>A0A1M5NEV7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 12">Aspartate-semialdehyde dehydrogenase</fullName>
            <shortName evidence="12">ASA dehydrogenase</shortName>
            <shortName evidence="12">ASADH</shortName>
            <ecNumber evidence="7 12">1.2.1.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="12">Aspartate-beta-semialdehyde dehydrogenase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="primary">asd</name>
        <name evidence="14" type="ORF">SAMN05444003_1371</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 12">
            <text>L-aspartate 4-semialdehyde + NADP(+) + phosphate = 4-phospho-L-aspartate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:24284"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57535"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:537519"/>
            <dbReference type="EC" id="1.2.1.11"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 12">Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; (S)-tetrahydrodipicolinate from L-aspartate: step 2/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 12">Amino-acid biosynthesis; L-methionine biosynthesis via de novo pathway; L-homoserine from L-aspartate: step 2/3.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4 12">Amino-acid biosynthesis; L-threonine biosynthesis; L-threonine from L-aspartate: step 2/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6 12">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 12">Belongs to the aspartate-semialdehyde dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.11" evidence="7 12"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900063.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1371"/>
    <dbReference type="EnsemblBacteria" id="SHG88002">
        <property type="protein sequence ID" value="SHG88002"/>
        <property type="gene ID" value="SAMN05444003_1371"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00016"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00050">
        <property type="reaction ID" value="UER00463"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00051">
        <property type="reaction ID" value="UER00464"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004073">
        <property type="term" value="F:aspartate-semialdehyde dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071266">
        <property type="term" value="P:'de novo' L-methionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019877">
        <property type="term" value="P:diaminopimelate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009088">
        <property type="term" value="P:threonine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02121">
        <property type="entry name" value="ASADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012080">
        <property type="entry name" value="Asp_semialdehyde_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005986">
        <property type="entry name" value="Asp_semialdehyde_DH_beta"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000534">
        <property type="entry name" value="Semialdehyde_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012280">
        <property type="entry name" value="Semialdhyde_DH_dimer_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01118">
        <property type="entry name" value="Semialdhyde_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02774">
        <property type="entry name" value="Semialdhyde_dhC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00859">
        <property type="entry name" value="Semialdhyde_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01296">
        <property type="entry name" value="asd_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9 12" id="KW-0220">Diaminopimelate biosynthesis</keyword>
    <keyword evidence="10 12" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="11 12" id="KW-0486">Methionine biosynthesis</keyword>
    <keyword evidence="12" id="KW-0521">NADP</keyword>
    <keyword evidence="12" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 12" id="KW-0791">Threonine biosynthesis</keyword>
    <feature type="domain" description="Semialdhyde_dh" evidence="13">
        <location>
            <begin position="14"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-thioester intermediate" evidence="12">
        <location>
            <position position="137"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="12">
        <location>
            <position position="251"/>
        </location>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <begin position="21"/>
            <end position="24"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <begin position="49"/>
            <end position="50"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="109"/>
        </location>
        <ligand>
            <name>phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="164"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <begin position="167"/>
            <end position="168"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="244"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="326"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005021"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00010584"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00013120"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="SMART" id="SM00859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="SHG88002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="349" mass="37814" checksum="7CBB2B9106C4D086" modified="2017-03-15" version="1">MNIQNPERPEPAPVVAIVGATGAVGIELIRCLEARDFPISELRLLASARSAGRRLPFKGREVIVQELTELSFDGVDYAFFSAGASISLKFAPFAVAEGAQVIDNSSAFRMDEDVPLVVPEANAETLADAPIVANPNCIAAILTCALAPLHQRWSITRLSMSTYQAASGGGAEMMEELREGTRAHLANEDFEPQILPHPYAFNVFSHNSDLDPDTGHNGEELKVIAETRRILGQPKLPISVTCIRVPILRAHGIALNIRFEDHVCQDRIRDALSDAPGVRLVDDRALNHFPMPSDASGQEDILVGRIRNDLGDPSGRTTSLFIVGDQLLKGAALNAVQIAETLYERVAVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NFL9</accession>
    <name>A0A1M5NFL9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">L-glyceraldehyde 3-phosphate reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1386</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the shaker potassium channel beta subunit family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88272.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900077.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1386"/>
    <dbReference type="EnsemblBacteria" id="SHG88272">
        <property type="protein sequence ID" value="SHG88272"/>
        <property type="gene ID" value="SAMN05444003_1386"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005399">
        <property type="entry name" value="K_chnl_volt-dep_bsu_KCNAB-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023210">
        <property type="entry name" value="NADP_OxRdtase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036812">
        <property type="entry name" value="NADP_OxRdtase_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43150">
        <property type="entry name" value="PTHR43150"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00248">
        <property type="entry name" value="Aldo_ket_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51430">
        <property type="entry name" value="SSF51430"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldo_ket_red" evidence="2">
        <location>
            <begin position="28"/>
            <end position="327"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG88272.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="347" mass="37828" checksum="D9B5B0BEF1CB95F5" modified="2017-03-15" version="1">MPYTPDAARYDSMPYRRCGASGLKLPAISLGLWHNFGGDTPHETKRAMCQTAFDAGITHFDLANNYGPPYGSAETAFGEILRTDFQHHRDELIISSKAGYDMWDGPYGEWGSRKHVISSCDQSLKRMGLDYVDIFYSHRFDPDTPLEETMGALDHIVRSGKALYIGISSYSAAKTREAAAILKDLGTPCRVHQPSYNILNRWVETDGLKDTLKDLGIGSIAFTPLAQGLLSNKYLSGIPEGSRMTQGKSLWEGQLSEATLAALKELNTLAEARGQSLAQMALAWVLRDGGITSALIGASRPEQITDCVAATRNLAFSDSELKEIDRIAGDANINLWAASSDSDNAPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NFR4</accession>
    <name>A0A1M5NFR4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Probable transaldolase</fullName>
            <ecNumber evidence="9">2.2.1.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">tal</name>
        <name evidence="10" type="ORF">SAMN05444003_1360</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>D-glyceraldehyde 3-phosphate + D-sedoheptulose 7-phosphate = beta-D-fructose 6-phosphate + D-erythrose 4-phosphate</text>
            <dbReference type="Rhea" id="RHEA:17053"/>
            <dbReference type="ChEBI" id="CHEBI:16897"/>
            <dbReference type="ChEBI" id="CHEBI:57483"/>
            <dbReference type="ChEBI" id="CHEBI:57634"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="EC" id="2.2.1.2"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 9">Carbohydrate degradation; pentose phosphate pathway; D-glyceraldehyde 3-phosphate and beta-D-fructose 6-phosphate from D-ribose 5-phosphate and D-xylulose 5-phosphate (non-oxidative stage): step 2/3.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 9">Belongs to the transaldolase family. Type 3B subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.2.1.2" evidence="9"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87803.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900051.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1360"/>
    <dbReference type="EnsemblBacteria" id="SHG87803">
        <property type="protein sequence ID" value="SHG87803"/>
        <property type="gene ID" value="SAMN05444003_1360"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00115">
        <property type="reaction ID" value="UER00414"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016832">
        <property type="term" value="F:aldehyde-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004801">
        <property type="term" value="F:transaldolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006098">
        <property type="term" value="P:pentose-phosphate shunt"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00956">
        <property type="entry name" value="Transaldolase_FSA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00494">
        <property type="entry name" value="Transaldolase_3b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001585">
        <property type="entry name" value="TAL/FSA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022999">
        <property type="entry name" value="Transaldolase_3B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004731">
        <property type="entry name" value="Transaldolase_3B/F6P_aldolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018225">
        <property type="entry name" value="Transaldolase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033919">
        <property type="entry name" value="TSA/FSA_arc/bac"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10683">
        <property type="entry name" value="PTHR10683"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00923">
        <property type="entry name" value="TAL_FSA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00875">
        <property type="entry name" value="fsa_talC_mipB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01054">
        <property type="entry name" value="TRANSALDOLASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 9" id="KW-0570">Pentose shunt</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 9" id="KW-0704">Schiff base</keyword>
    <keyword evidence="6 9" id="KW-0808">Transferase</keyword>
    <feature type="active site" description="Schiff-base intermediate with substrate" evidence="9">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001469"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005740"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG87803.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="217" mass="22963" checksum="D09D1679896D29FE" modified="2017-03-15" version="1">MKFFVDTAEIDQIKELHALGMVDGVTTNPSLIAKSGRDILEVTKEICDIVDGPVSAEVVALDADTMLAEGRKLAKIADNIAVKVPLTWAGLQTCKALSDEGTMVNVTLCFSANQALLAAKAGATFISPFIGRLDDINLDGLELIEDIRTIYDNYGFETQILAASIRSANHMSGCAKIGADVATAPPAVIKNMANHVLTDKGLAGFMADVEKAGIKIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NG40</accession>
    <name>A0A1M5NG40_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Beta-ketodecanoyl-[acyl-carrier-protein] synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1397</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88478.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900087.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1397"/>
    <dbReference type="EnsemblBacteria" id="SHG88478">
        <property type="protein sequence ID" value="SHG88478"/>
        <property type="gene ID" value="SAMN05444003_1397"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004315">
        <property type="term" value="F:3-oxoacyl-[acyl-carrier-protein] synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013751">
        <property type="entry name" value="ACP_syn_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013747">
        <property type="entry name" value="ACP_syn_III_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018201">
        <property type="entry name" value="Ketoacyl_synth_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08545">
        <property type="entry name" value="ACP_syn_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08541">
        <property type="entry name" value="ACP_syn_III_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00606">
        <property type="entry name" value="B_KETOACYL_SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="ACP_syn_III" evidence="3">
        <location>
            <begin position="150"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="domain" description="ACP_syn_III_C" evidence="2">
        <location>
            <begin position="282"/>
            <end position="370"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08541"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08545"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG88478.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="372" mass="40366" checksum="1BE1D7B5574876E7" modified="2017-03-15" version="1">MHSVAITGTGVFTPENIITNDELVEAFNAFADKENAANAAAIEAGEAEAIPHSSAEFIVAASGIERRYVLDKEGVLDPDRMYPKLNPRADDMPAIMAEIAVDAAQKALAQAGIDGSDVDLVLCAASNMERAYPAVAVEIQQLLGAGGFAFDMNVACSSATFGIQTAADMIRAGSVRTALVVNPEICSAHLEWRDRDCHFIFGDVATATLLQREEDAKGLHFKVHSTRCATQFSNNIRNNNGYLRRTHDQMEDRRDMQFMQNGRKVFKEVLPLVSKHIATHMDDEGVTSADLKRLWLHQANKTMNDYIGKKVLGREPEAGEQPNILQDYANTSSAGSIIAFSKHSDDMTPGDKGIICSFGAGYSVGSVLVERA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NM79</accession>
    <name>A0A1M5NM79_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1498</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90694.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900175.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG90694">
        <property type="protein sequence ID" value="SHG90694"/>
        <property type="gene ID" value="SAMN05444003_1498"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013216">
        <property type="entry name" value="Methyltransf_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08241">
        <property type="entry name" value="Methyltransf_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransf_11" evidence="1">
        <location>
            <begin position="51"/>
            <end position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG90694.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="268" mass="27954" checksum="58E8278251E5F334" modified="2017-03-15" version="1">MTQNTRMTGVANGELWGHRAQDWAKYQEASIAPVFDAVLDRTCVGEGTRYLDIGCGAGMAAAKASALGAVVTGLDASSAMIDIAQSRLPAAAFQVGDLQELPFADGRFDLVTSFNAIQYAGDVAEALSEVKRVLAPGGTIAIATWGNPEGMEAAEVVTVLKPLLPPPPPNAPGPFALSDDEVLRQFVEKGGFEAYDVFDVESPWSYPDEPAALAGLAASGVAANAISLAGKDAVDEAHRSAIAPYRKADGRIEFGAAFKVVLARLSTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NNU1</accession>
    <name>A0A1M5NNU1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Phosphonate transport system substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1521</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the phosphate/phosphite/phosphonate binding protein family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91231.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900195.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1521"/>
    <dbReference type="EnsemblBacteria" id="SHG91231">
        <property type="protein sequence ID" value="SHG91231"/>
        <property type="gene ID" value="SAMN05444003_1521"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015716">
        <property type="term" value="P:organic phosphonate transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005770">
        <property type="entry name" value="PhnD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017797">
        <property type="entry name" value="Phosphnate-bd"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01098">
        <property type="entry name" value="3A0109s03R"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03431">
        <property type="entry name" value="PhnD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013042122" evidence="3">
        <location>
            <begin position="22"/>
            <end position="303"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007162"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG91231.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="303" mass="32014" checksum="4DAAE6651EDC870E" modified="2017-03-15" version="1">MKKTLALALVATTSLSSAAFAEGIDQFRIGILGGENAQDRMNSYACLQEYASEALGVETKLFAPADYNGVIQGLLGGTIDMAWLGASSYAATYLQDPEAVEPVLVKVNLDGSIGYHSIGFARVDSGVTSLDDMEGKVFGFGDPNSTSGYLIPSIEIPQYKDGITMESGDYFGEVKFTGGHEQTIVAVANGDIDGGVTWADGQGNWEDGYNSGALRKAVDAGLIDMNDLVEIWKSAVIPEGPVVLRQALPEEVKVTMTELVDGLYEADPDCAYGVAAGDTLGFQPVTHDTYISIVEARKAKIGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NQD3</accession>
    <name>A0A1M5NQD3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Carbon-monoxide dehydrogenase small subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1529</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91399.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900203.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1529"/>
    <dbReference type="EnsemblBacteria" id="SHG91399">
        <property type="protein sequence ID" value="SHG91399"/>
        <property type="gene ID" value="SAMN05444003_1529"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002888">
        <property type="entry name" value="2Fe-2S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036884">
        <property type="entry name" value="2Fe-2S-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006058">
        <property type="entry name" value="2Fe2S_fd_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01799">
        <property type="entry name" value="Fer2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47741">
        <property type="entry name" value="SSF47741"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00197">
        <property type="entry name" value="2FE2S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="2">
        <location>
            <begin position="4"/>
            <end position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG91399.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="160" mass="17018" checksum="BCB60DBE5AE96663" modified="2017-03-15" version="1">MPAIAVSTTINDDTVEFLCQPDETLLDVLRNRLGLMGAKEGCGTGDCGACSAIVDGRVVCSCLVLGAEAEGRTIETIEGMANGNELHPLQRKFIEHAALQCGICTPGFLMAAKALLEVNPDPTETEIRFWLAGNLCRCTGYDKIVRAVQDAAAEMRGETA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NT77</accession>
    <name>A0A1M5NT77_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">EamA-like transporter family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1560</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG92163.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900229.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG92163">
        <property type="protein sequence ID" value="SHG92163"/>
        <property type="gene ID" value="SAMN05444003_1560"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="32"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="65"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="90"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="116"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="141"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="174"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="197"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="230"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="256"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="147"/>
            <end position="273"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG92163.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="277" mass="28381" checksum="ED0CF74C037CEBD7" modified="2017-03-15" version="1">MRLLFLTVIVMIAFASNSVLSRVGVFTYGMDPFAFATVRVGAGAAMLAFLVLWQKGAIPFAQGRSYAGSVSLAIYMVGFSWAYLQLDAGLGALILFGAMQVAMFGFAVWRGDDVPLMRWIGAAVALTGLTILLWPGGSAPIHGPSAVAMALAGIGWAAYTLIGQKATDPLAASSANFVLCLPIVGVVWVLAGLTGMTLGGVIAAVISGAITSGLGYALWYRVVPQLSTTVAAVAQLSVPVIAVAAGVALLGEPLNSRLIIAGLLVLGGIGLSLLRRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NVF9</accession>
    <name>A0A1M5NVF9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Probable nicotinate-nucleotide adenylyltransferase</fullName>
            <ecNumber evidence="7">2.7.7.18</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Deamido-NAD(+) diphosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Deamido-NAD(+) pyrophosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Nicotinate mononucleotide adenylyltransferase</fullName>
            <shortName evidence="7">NaMN adenylyltransferase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">nadD</name>
        <name evidence="9" type="ORF">SAMN05444003_1615</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 7">Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>ATP + H(+) + nicotinate beta-D-ribonucleotide = deamido-NAD(+) + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:22860"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57502"/>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
            <dbReference type="EC" id="2.7.7.18"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 7">Cofactor biosynthesis; NAD(+) biosynthesis; deamido-NAD(+) from nicotinate D-ribonucleotide: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 7">Belongs to the NadD family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.18" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93521.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900477.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1615"/>
    <dbReference type="EnsemblBacteria" id="SHG93521">
        <property type="protein sequence ID" value="SHG93521"/>
        <property type="gene ID" value="SAMN05444003_1615"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00253">
        <property type="reaction ID" value="UER00332"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004515">
        <property type="term" value="F:nicotinate-nucleotide adenylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009435">
        <property type="term" value="P:NAD biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02165">
        <property type="entry name" value="NMNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00244">
        <property type="entry name" value="NaMN_adenylyltr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004821">
        <property type="entry name" value="Cyt_trans-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005248">
        <property type="entry name" value="NadD/NMNAT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01467">
        <property type="entry name" value="CTP_transf_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00482">
        <property type="entry name" value="TIGR00482"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 7" id="KW-0520">NAD</keyword>
    <keyword evidence="7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7 9" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="5 7" id="KW-0662">Pyridine nucleotide biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="CTP_transf_like" evidence="8">
        <location>
            <begin position="15"/>
            <end position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001785"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG93521.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="197" mass="21883" checksum="CC31FCA3A0800356" modified="2017-03-15" version="1">MQGYPTARAGQVVGLLGGSFDPPHSAHVHITKTALRRFGLDKLWWLVSPGNPLKANGPAPLAERVQASRAVMKHPKVEVTDLEARLGTRFTAQTLAALIDRYPGVRFVWLMGADNLGQFDQWQDWQWIMETVPIGVMARPGDRISARMSKAARVYRDAKLSGRSSQVLGQGEAPRWCFINMPMSDMSSTAIRARGEW</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PS05</accession>
    <name>A0A1M5PS05_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative glutathione S-transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1807</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04460.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900605.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1807"/>
    <dbReference type="EnsemblBacteria" id="SHH04460">
        <property type="protein sequence ID" value="SHH04460"/>
        <property type="gene ID" value="SAMN05444003_1807"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004364">
        <property type="term" value="F:glutathione transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006749">
        <property type="term" value="P:glutathione metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010987">
        <property type="entry name" value="Glutathione-S-Trfase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036282">
        <property type="entry name" value="Glutathione-S-Trfase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040079">
        <property type="entry name" value="Glutathione_S-Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004045">
        <property type="entry name" value="Glutathione_S-Trfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016639">
        <property type="entry name" value="GST_Omega/GSH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32419">
        <property type="entry name" value="PTHR32419"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13409">
        <property type="entry name" value="GST_N_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015753">
        <property type="entry name" value="GST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00019">
        <property type="entry name" value="Glutathione_Transferase_(cytos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01206">
        <property type="entry name" value="Xi.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47616">
        <property type="entry name" value="SSF47616"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50405">
        <property type="entry name" value="GST_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GST C-terminal" evidence="2">
        <location>
            <begin position="172"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="1">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="1">
        <location>
            <position position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR015753-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH04460.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="324" mass="37347" checksum="49747F9B3D7A9C80" modified="2017-03-15" version="1">MGQLVDGVWHDVWYDTKSTGGAFKRTTAKFRNWITADGSAGPSGEGGFPAESGRYHLYVSYACPWAHRTLVFRKLKGLVDHITISAVHPDMLSDGWTFETDDNGATGDTLYGLPFARDIYTKAEPEVSGRVTVPILWDKQRETIVSNESSEIIRMFNSAFNDLTGNTLDLWPAELRDEIETFNARIYDTVNNGVYKSGFATTQEAYDAAVGPLFDSLDWLEDHLSSNRYIMGDQITEADWRLWTTLVRFDPVYQLHFKCNRRRLIDYPNLWAYTRELYQWDGVAETVNMDHIVRHYHYSHESINPHRIIPINPLLDWMEPHRRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PU03</accession>
    <name>A0A1M5PU03_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1856</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05457.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900648.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1856"/>
    <dbReference type="EnsemblBacteria" id="SHH05457">
        <property type="protein sequence ID" value="SHH05457"/>
        <property type="gene ID" value="SAMN05444003_1856"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021362">
        <property type="entry name" value="DUF2834"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11196">
        <property type="entry name" value="DEP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="40"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="76"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH05457.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="99" mass="11528" checksum="30BEA9F75CBD0929" modified="2017-03-15" version="1">MRWVFLALAIWGAIHPMYYFIRWFNENGYDIMAMVDAWHVNAATSGLVWDLTIAAVTLTIWIIYEVIQRRTWLDLIAIPATFCIGVSCGLPLYLFLRSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PW55</accession>
    <name>A0A1M5PW55_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 7">Threonylcarbamoyl-AMP synthase</fullName>
            <shortName evidence="7">TC-AMP synthase</shortName>
            <ecNumber evidence="4 7">2.7.7.87</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6 7">L-threonylcarbamoyladenylate synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_1879</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>ATP + hydrogencarbonate + L-threonine = diphosphate + H2O + L-threonylcarbamoyladenylate</text>
            <dbReference type="Rhea" id="RHEA:36407"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:17544"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57926"/>
            <dbReference type="ChEBI" id="CHEBI:73682"/>
            <dbReference type="EC" id="2.7.7.87"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the SUA5 family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.87" evidence="4 7"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05906.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900668.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1879"/>
    <dbReference type="EnsemblBacteria" id="SHH05906">
        <property type="protein sequence ID" value="SHH05906"/>
        <property type="gene ID" value="SAMN05444003_1879"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
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        <property type="match status" value="1"/>
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    </dbReference>
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    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 8" id="KW-0547">Nucleotide-binding</keyword>
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    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <keyword evidence="7" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="YrdC-like" evidence="9">
        <location>
            <begin position="13"/>
            <end position="199"/>
        </location>
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        <location>
            <position position="35"/>
        </location>
        <ligand>
            <name>L-threonine</name>
            <dbReference type="ChEBI" id="CHEBI:57926"/>
        </ligand>
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        <location>
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        </ligand>
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        <location>
            <position position="182"/>
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        <ligand>
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        </ligand>
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    </evidence>
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            <dbReference type="ARBA" id="ARBA00029774"/>
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        <source>
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    </evidence>
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            <dbReference type="PROSITE" id="PS51163"/>
        </source>
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            <dbReference type="EMBL" id="SHH05906.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="316" mass="32552" checksum="33C13EE15664E1A6" modified="2017-03-15" version="1">MTSKKTQMLGTTPQDIAQAASILSGGGLIAFPTETVYGLGADACDDRAVAQIYAAKGRPSFNPLIAHVADAETAESYVAFNETALRLAQAFWPGALTLVLALKADAKISKLVTAGLRTLAVRVPDHPVGQALLKAADMPIAAPSANPSGRVSPTTADHVLAGLTGKIDAVIDGGACPVGLESTIISCVGTPKLLRAGGVPLEAIEACLGVALQREEYAETPTAPGQLASHYAPLGEVRLNAQTVEADETLLGFGPVEADYNLSRAGDLTEAAANLFDCLHQLDRAEVTKIAVSPIPHTGLGAAINDRLKRAAAPRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PXP2</accession>
    <name>A0A1M5PXP2_9RHOB</name>
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        <submittedName>
            <fullName evidence="2">Uncharacterized peroxidase-related enzyme</fullName>
        </submittedName>
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        <name evidence="2" type="ORF">SAMN05444003_1927</name>
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        <name type="scientific">Cognatiyoonia sediminum</name>
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                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06797.1"/>
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        <property type="component" value="Unassembled WGS sequence"/>
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        <property type="project" value="UniProtKB-KW"/>
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        <property type="entry name" value="peroxid_rel"/>
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    </dbReference>
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    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CMD" evidence="1">
        <location>
            <begin position="49"/>
            <end position="95"/>
        </location>
    </feature>
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            <dbReference type="Pfam" id="PF02627"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="EMBL" id="SHH06797.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="188" mass="21023" checksum="80E1362FF007529B" modified="2017-03-15" version="1">MSNQPTALDLPMVDPLPEQTQKYFDICQEKLGMVPNVLQAYAFDIDKLNAFTALYNDLMLADSGLSKLEREMIAVCVSSINKCFYCLTAHGAAVRALSSDPILGERMVMNWRTADLDGRQTAMLTFAEKITLASHTIVEADRQGLRDVGFSDRDIWDIANVAGFYNMSNRVASATDMRPNEEYHAQSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PYM5</accession>
    <name>A0A1M5PYM5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acetyltransferase (GNAT) family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1926</name>
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    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
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                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06782.1"/>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
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        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="94"/>
            <end position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH06782.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="240" mass="26127" checksum="8F0E376DB3F07267" modified="2017-03-15" version="1">MTFPTAQTIYDAIDHTWPAAEYLTTEKWTFRRGTGGGSRVSAATANGDVSDDDIVEAEAQMMRWSQSGLFMIRDGETDLDQQLERLGYVIKDPVTLYAAPLEELTQQRPPPVSSFVSWPPLASQKEIWADGGIGPERLAIMGRAEGPKTTLLGRAKDTPAGTVYVGISGAQAMIHALEVHVDMRRSGMGRILTTAAAVWAKGQGASYLSLATTDANVAANRLYSSLGMQVVGQYRYRIKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PZF9</accession>
    <name>A0A1M5PZF9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Tetratricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1951</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07255.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1951"/>
    <dbReference type="EnsemblBacteria" id="SHH07255">
        <property type="protein sequence ID" value="SHH07255"/>
        <property type="gene ID" value="SAMN05444003_1951"/>
    </dbReference>
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        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
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    </dbReference>
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    </dbReference>
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        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="TPR"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012861358" evidence="2">
        <location>
            <begin position="24"/>
            <end position="564"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="357"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="464"/>
            <end position="497"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH07255.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="564" mass="61876" checksum="7F94D6564D11CD20" modified="2017-03-15" version="1">MVIRFLRAAALISATTFSAPVSAEIDPGSYLAARHAAMSNDFLGSARYYTKSLLSDPFNPELLENALTAYLGLGQLDRAEALSVRLLDRGEKSQIATIVRQSGAAGTENWDSIFFNLEAGQTISPLVDMLIQAWAELGRGDVTAAMATFDGAIENPQTRTFALYHKALALAAVGDFEAAEELFRTGDNGQAFSARSAIAHAQVLSQLERNEDALIMLGQVFGQTRNPGVLDLRAKLENGETVPYSVVQTAQQGVGEVMFMVSELLSGDTPDGYTLMYTRAAEHLDPGNTAAILSSGRLLDNLEQYDLASETYSRIPQDDPSFVAAELGRVDVLRRAERHDAAAEVASNLVRLHPDIPAVHAKLGDSFRRLERYEEAADAYSDALDLFSDADTARWLVYYTRAITNHELDRWPEAEADFRAALDINPDQPQVLNYLGYSLVERKEKLDEAMGMIETAVAAQPNNGAIVDSLGWVLFQLGRYEEAVSYMERAASLEAVDPIITDHLGDVYWSVGRKIEAVFQWNRALSFEPDEELADRIRRKLDVGLDAVLEAEGGEPIKVADDDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PZM2</accession>
    <name>A0A1M5PZM2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 7">S-formylglutathione hydrolase</fullName>
            <ecNumber evidence="3 7">3.1.2.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_1946</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Serine hydrolase involved in the detoxification of formaldehyde.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>H2O + S-formylglutathione = formate + glutathione + H(+)</text>
            <dbReference type="Rhea" id="RHEA:14961"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:57688"/>
            <dbReference type="ChEBI" id="CHEBI:57925"/>
            <dbReference type="EC" id="3.1.2.12"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the esterase D family.</text>
    </comment>
    <dbReference type="EC" id="3.1.2.12" evidence="3 7"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07140.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900722.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1946"/>
    <dbReference type="EnsemblBacteria" id="SHH07140">
        <property type="protein sequence ID" value="SHH07140"/>
        <property type="gene ID" value="SAMN05444003_1946"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052689">
        <property type="term" value="F:carboxylic ester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018738">
        <property type="term" value="F:S-formylglutathione hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046294">
        <property type="term" value="P:formaldehyde catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000801">
        <property type="entry name" value="Esterase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014186">
        <property type="entry name" value="S-formylglutathione_hydrol"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10061">
        <property type="entry name" value="PTHR10061"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00756">
        <property type="entry name" value="Esterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02821">
        <property type="entry name" value="fghA_ester_D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0719">Serine esterase</keyword>
    <feature type="active site" description="Charge relay system" evidence="6">
        <location>
            <position position="146"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="6">
        <location>
            <position position="222"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="6">
        <location>
            <position position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005622"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022487"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR614186-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU363068"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH07140.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="276" mass="30318" checksum="CE442981157BB1A6" modified="2017-03-15" version="1">METISENRCFDGTQGVHKHPSDACNCDMTFGLFLPQEAQFTKVPLLWYLSGLTCTHENAMTKAGAQVWAAEQGIGLIFPDTSPRGEDVANDDAYDLGKGAGFYVNATQDPWAPHFQMYDYIADELPALVAKNFSIDMDRQGITGHSMGGHGALTLAMTRPGQFQSVSAFAPICHPTNSDWGKKQLGAYLGEDTSNWAAHDSTLLMKDRGFDGPILIDTGTDDQFGDLLGTEHLAAAIAERRQNAQIRLQPGYDHSYFFVSTFIEDHVAFHAQALYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-06-02" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q4P8</accession>
    <name>A0A1M5Q4P8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2030</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH08761">
        <property type="protein sequence ID" value="SHH08761"/>
        <property type="gene ID" value="SAMN05444003_2030"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="18"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="19"/>
            <end position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH08761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="45" mass="5122" checksum="7FCDE07EE82B9285" modified="2017-03-15" version="1">MADGIIILEHCKVKYAPEMQSASDRDRPLAKNDPSVRHAGFRRLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q6U9</accession>
    <name>A0A1M5Q6U9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative thiamine transport system ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2074</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09626.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900829.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2074"/>
    <dbReference type="EnsemblBacteria" id="SHH09626">
        <property type="protein sequence ID" value="SHH09626"/>
        <property type="gene ID" value="SAMN05444003_2074"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="5"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="36"/>
            <end position="43"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH09626.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="219" mass="23191" checksum="4FDAA555DA99B2B5" modified="2017-03-15" version="1">MHDGLELKDVTIRKGGNVLLSLSRKIEPGEVLSIMGPSGIGKSTLLSFITGTLAPAFEGEGRIVLDGNDITEVRPDKRRVGILFQDDLLFPHLSVGANLAFGLASGGSKAERTAKIEEALAEVGLEGYANRDPATLSGGQKARVALMRMLLSEPCALLLDEAFSRLDADRRAQVRSLVFARAMDRNLPVLMVTHDAEDAKAAGGEVITLGTSTPTGEAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q7M2</accession>
    <name>A0A1M5Q7M2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Farnesyl diphosphate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2089</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the FPP/GGPP synthase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09920.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900844.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2089"/>
    <dbReference type="EnsemblBacteria" id="SHH09920">
        <property type="protein sequence ID" value="SHH09920"/>
        <property type="gene ID" value="SAMN05444003_2089"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008299">
        <property type="term" value="P:isoprenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00685">
        <property type="entry name" value="Trans_IPPS_HT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.600.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008949">
        <property type="entry name" value="Isoprenoid_synthase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000092">
        <property type="entry name" value="Polyprenyl_synt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033749">
        <property type="entry name" value="Polyprenyl_synt_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00348">
        <property type="entry name" value="polyprenyl_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48576">
        <property type="entry name" value="SSF48576"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00723">
        <property type="entry name" value="POLYPRENYL_SYNTHASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00444">
        <property type="entry name" value="POLYPRENYL_SYNTHASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU004466"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH09920.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="289" mass="30706" checksum="F2E15DA4082E43F3" modified="2017-03-15" version="1">MSDFQDALARSNFLVQHEMETLLYSPLSEQLTAAMRYSVAGGKGLRGFLVMESSRLHGVSEGRSLRAALGVECLHAYSLVHDDLPCMDDDDLRRGQPTVHVKWDQATAVLAGDALQADAFKFVSETGGSVQVLRRLIATFSFAAGARGMVGGQAADIAAEMSGGRLTLDEITSLQNAKTGALLTWSCIAGPILAEADEKSMKTYGDALGLAFQIADDILDVEGDAAEVGKATQKDEAAGKATFVSLLGLDEAKRRAQALVDEACEALSPYGNDAQTLREAAQFVVSRSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q847</accession>
    <name>A0A1M5Q847_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Exodeoxyribonuclease 7 small subunit</fullName>
            <ecNumber evidence="3">3.1.11.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Exodeoxyribonuclease VII small subunit</fullName>
            <shortName evidence="3">Exonuclease VII small subunit</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">xseB</name>
        <name evidence="5" type="ORF">SAMN05444003_2090</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>Exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield nucleoside 5'-phosphates.</text>
            <dbReference type="EC" id="3.1.11.6"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="3">Heterooligomer composed of large and small subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the XseB family.</text>
    </comment>
    <dbReference type="EC" id="3.1.11.6" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09939.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900845.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2090"/>
    <dbReference type="EnsemblBacteria" id="SHH09939">
        <property type="protein sequence ID" value="SHH09939"/>
        <property type="gene ID" value="SAMN05444003_2090"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009318">
        <property type="term" value="C:exodeoxyribonuclease VII complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008855">
        <property type="term" value="F:exodeoxyribonuclease VII activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006308">
        <property type="term" value="P:DNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.1040">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00337">
        <property type="entry name" value="Exonuc_7_S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003761">
        <property type="entry name" value="Exonuc_VII_S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037004">
        <property type="entry name" value="Exonuc_VII_ssu_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34137">
        <property type="entry name" value="PTHR34137"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02609">
        <property type="entry name" value="Exonuc_VII_S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF116842">
        <property type="entry name" value="SSF116842"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01280">
        <property type="entry name" value="xseB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 3" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="39"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009998"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH09939.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="79" mass="8494" checksum="28FF73F2CC0C9190" modified="2017-03-15" version="1">MSDVNVDELSFEDAMRELESVVGQLERGDVALDDSIALYERGAALKARCEAKLKEAEEKVAKITLDGSGQPVGTAPLDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q9D3</accession>
    <name>A0A1M5Q9D3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="17">Glutamate synthase (NADPH) large subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">SAMN05444003_2100</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>[3Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:21137"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="14">Amino-acid biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the glutamate synthase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH10123.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900853.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2100"/>
    <dbReference type="EnsemblBacteria" id="SHH10123">
        <property type="protein sequence ID" value="SHH10123"/>
        <property type="gene ID" value="SAMN05444003_2100"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00705"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051538">
        <property type="term" value="F:3 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015930">
        <property type="term" value="F:glutamate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006537">
        <property type="term" value="P:glutamate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00982">
        <property type="entry name" value="gltB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd02808">
        <property type="entry name" value="GltS_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017932">
        <property type="entry name" value="GATase_2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002489">
        <property type="entry name" value="Glu_synth_asu_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036485">
        <property type="entry name" value="Glu_synth_asu_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006982">
        <property type="entry name" value="Glu_synth_centr_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002932">
        <property type="entry name" value="Glu_synthdom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00310">
        <property type="entry name" value="GATase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04898">
        <property type="entry name" value="Glu_syn_central"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01645">
        <property type="entry name" value="Glu_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01493">
        <property type="entry name" value="GXGXG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69336">
        <property type="entry name" value="SSF69336"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51278">
        <property type="entry name" value="GATASE_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13" id="KW-0003">3Fe-4S</keyword>
    <keyword evidence="4" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="6" id="KW-0288">FMN</keyword>
    <keyword evidence="12" id="KW-0314">Glutamate biosynthesis</keyword>
    <keyword evidence="8" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="10" id="KW-0408">Iron</keyword>
    <keyword evidence="11" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glutamine amidotransferase type-2" evidence="16">
        <location>
            <begin position="34"/>
            <end position="427"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="15">
        <location>
            <begin position="904"/>
            <end position="928"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023164"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00029440"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS51278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="SHH10123.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="1506" mass="163249" checksum="9F2CBBF48101B33B" modified="2017-03-15" version="1">MSTFDNAWVEAEKAKRDWMAENSLYRDADEHASCGVGLVVSIDGTPSRGVVENGIDALKAVWHRGAVDADGKTGDGAGIHVQIPVPFFYDQVRRTGHEPDDNKLIAVGQIFLPRTDFGAQEQSRTIVEAEVLRMGHYIYGWRHVPVDNDCLGEKANATRPEIEQILIRNEKDISEEEFERELYIIRRRIEKAAGPDLYVCSMSCRSIIYKGMMLAEQVAIFYPDLMDERFESAFAIYHQRYSTNTFPQWSLAQPFRMLAHNGEINTLKGNVNWMRSHEIRMASGAFGDSAEDIKPIIPAGASDSSALDSVFEVLVRAGRNAPMAKTMMVPEAWSKQAVDMPQAWQDMYGYCNAVMEPWDGPAALAMTDGRWVCGGLDRNGLRPLRYVVTGDGLLIAGSEVGMVPIDEATVVEKGALGPGQLIAVDMEEGKLFHDTEIKDRLAAAQPFGEWVGKVTDLNSMLKDIPETAMFSGDDLRTRQVSAGYSIEELEQVLAPMAEDGKEMIASMGDDTPSAVLSKTYRPLSHFFRQNFSQVTNPPIDSLRESRVMSLKTRFGNLKNVLDESSSQTEILVLDSPFVANAEFDKMVEQFGDDVAIIDCTFEAGAGALSAGLARIRSEAEDAVRSGAGHIVLTDQHQSEARIGMPMILATSAVHSGLTKNGLRTFCSINVRSAECIDPHYFAVLIGCGATTVNAYLAQDSIADRIGRGLIDGSLTDAMRRYRAAVDAGLLKIMSKMGISVLSSYRGGLNFEAVGLSRAMVAEYFPGMHSRISGIGVSGIQSKLEEIHAKGWKNGTDILPIGGFYKARRSGEKHAWEAQTMHLMQAACNNASYAMWQQYSKKMQANPPIHLRDLLAVKPLGAPVPIEEVESITSIRKRFVTPGMSLGALSPEAHKTLNVAMNRIGAKSDSGEGGEDPAHFHPEPNGDNPSAKIKQVASGRFGVTAEYLNHCEELEIKVAQGAKPGEGGQLPGMKVTDLIARLRHSTKGVTLISPPPHHDIYSIEDLAQLIYDLKQINPRCKVTVKLVSSSGVGTIAAGVAKAKADVILVSGHNGGTGASPATSIKYAGLPWEMGLTEAHQVLAMNNLRERVTLRTDGGLRTGRDIVMAAMMGAEEYGIGTAALIAMGCIMVRQCQSNTCPVGVCTQDEALRGKFTGNADKVVNLITFYATEVRELLAELGARSLDEIIGRADLLTQVSRGSAHLDDLDLNPLLITVDGASKITYDRDRPRNAVDDTLDAQIVKDAERFLKDGEKMQLDYAVQNTLRTIGTRTSSHIVQEHGMRNDLQPDHLTVKLRGSAGQSLGAFAVPGLKLEVSGDANDYVGKGLSGGMIVVRPPMASPLVASENTIIGNTVLYGATDGYLFAAGRAGERFAVRNSGAKVVIEGCGTNGCEYMTGGVAVILGSIGANFGAGMTGGMAYLYEPDGASAELVNMETLVTCPVTVDYWMDQLHGLIQMHAKETGSQKAAQILQDWDIEKHHFLQVCPKEMLVHIPHPLSIEDAAIPAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QIW2</accession>
    <name>A0A1M5QIW2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ribonuclease D</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2150</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14057.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900961.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2150"/>
    <dbReference type="EnsemblBacteria" id="SHH14057">
        <property type="protein sequence ID" value="SHH14057"/>
        <property type="gene ID" value="SAMN05444003_2150"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008408">
        <property type="term" value="F:3'-5' exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002562">
        <property type="entry name" value="3'-5'_exonuclease_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01612">
        <property type="entry name" value="DNA_pol_A_exo1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00474">
        <property type="entry name" value="35EXOc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="3'-5' exonuclease" evidence="2">
        <location>
            <begin position="1"/>
            <end position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00474"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH14057.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="203" mass="22697" checksum="6B6C4869E7FF16BA" modified="2017-03-15" version="1">MANHLYKNDLPDGLDLGPIVAIDCETMGLNPHRDRLCLIQMSGGDGDCHLVQVEIGQTEAPNLVAMLENPNVLKLFHFGRFDIAALFHTFGATTVPVYCTKIASKMVRTFTDRHGLKNLLQELLNVDISKHQQQSDWGAADLTAAQLDYAASDVLYLHQLRDELNIRLEREGRTDLAQACFDFLPTRAKLDIAGWPEVDIFAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QKV8</accession>
    <name>A0A1M5QKV8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="14 15">Protein translocase subunit SecA</fullName>
            <ecNumber evidence="14">7.4.2.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="primary">secA</name>
        <name evidence="20" type="ORF">SAMN05444003_2174</name>
    </gene>
    <organism evidence="20 21">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="20 21" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20 21">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="14">Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="14">Monomer and homodimer. Part of the essential Sec protein translocation apparatus which comprises SecA, SecYEG and auxiliary proteins SecDF-YajC and YidC.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="14">Cell membrane</location>
            <topology evidence="14">Peripheral membrane protein</topology>
            <orientation evidence="14">Cytoplasmic side</orientation>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="14">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="14">Distribution is 50-50.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 14 15">Belongs to the SecA family.</text>
    </comment>
    <dbReference type="EC" id="7.4.2.8" evidence="14"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14566.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900996.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2174"/>
    <dbReference type="EnsemblBacteria" id="SHH14566">
        <property type="protein sequence ID" value="SHH14566"/>
        <property type="gene ID" value="SAMN05444003_2174"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0065002">
        <property type="term" value="P:intracellular protein transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017038">
        <property type="term" value="P:protein import"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006605">
        <property type="term" value="P:protein targeting"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd18803">
        <property type="entry name" value="SF2_C_secA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01382">
        <property type="entry name" value="SecA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004027">
        <property type="entry name" value="SEC_C_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000185">
        <property type="entry name" value="SecA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020937">
        <property type="entry name" value="SecA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011115">
        <property type="entry name" value="SecA_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014018">
        <property type="entry name" value="SecA_motor_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011130">
        <property type="entry name" value="SecA_preprotein_X-link_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044722">
        <property type="entry name" value="SecA_SF2_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011116">
        <property type="entry name" value="SecA_Wing/Scaffold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036266">
        <property type="entry name" value="SecA_Wing/Scaffold_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036670">
        <property type="entry name" value="SecA_X-link_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30612">
        <property type="entry name" value="PTHR30612"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02810">
        <property type="entry name" value="SEC-C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07517">
        <property type="entry name" value="SecA_DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01043">
        <property type="entry name" value="SecA_PP_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07516">
        <property type="entry name" value="SecA_SW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00906">
        <property type="entry name" value="SECA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00957">
        <property type="entry name" value="SecA_DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00958">
        <property type="entry name" value="SecA_PP_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81767">
        <property type="entry name" value="SSF81767"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81886">
        <property type="entry name" value="SSF81886"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00963">
        <property type="entry name" value="secA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01312">
        <property type="entry name" value="SECA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51196">
        <property type="entry name" value="SECA_MOTOR_DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 14 15" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 14" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 14" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="13 14" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7 14 15" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10 14 15" id="KW-0653">Protein transport</keyword>
    <keyword evidence="21" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11 14" id="KW-1278">Translocase</keyword>
    <keyword evidence="12 14 15" id="KW-0811">Translocation</keyword>
    <keyword evidence="3 14 15" id="KW-0813">Transport</keyword>
    <keyword evidence="8" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="SECA_MOTOR_DEAD" evidence="19">
        <location>
            <begin position="5"/>
            <end position="614"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase ATP-binding" evidence="17">
        <location>
            <begin position="91"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="18">
        <location>
            <begin position="427"/>
            <end position="630"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="16">
        <location>
            <begin position="843"/>
            <end position="895"/>
        </location>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="89"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <begin position="107"/>
            <end position="111"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="502"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007650"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="RuleBase" id="RU003874"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="19">
        <source>
            <dbReference type="PROSITE" id="PS51196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="EMBL" id="SHH14566.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="904" mass="101139" checksum="8F2BE4A8AA2FFB0E" modified="2017-03-15" version="1">MLGLGSITKKVFGTPSDRKVKAARPMVKKINDLEAEFEKLSDDGLKEKTEELKSRLAGGESLDALLPEAFANCREAAKRALGLRAFDTQLLGGIFLHQGNISEMKTGEGKTLVATFPAYLNALSGKGVHIVTVNDYLAKRDAEWMSKVYGALGLTTGVVIPHQPEEEKAAAYGCDVTYATNNELGFDYLRDNMKSELSQMHQRYHNFAIVDEVDSILIDEARTPLIISGPAQDRSEMYRQIDKLIPEVQDEHFVIDEKSRSATFNDEGNDFLEERLAQVGLLPEGQSLYDPESASLVHHVSQGLRAHKLFTKDKDYIVRDNEAVLIDEFTGRMMIGRRLSDGLHQAIEAKEGLTIKPENVTLASVTFQNYFRLYDKLAGMTGTAMTEADEFDEIYGLGVVEVPTNRPVARVDENDMVYRTVQEKFDGVVEQIKVANEKGQPTLVGTTSIEKSEFLSQLLKQQGIEHNVLNARQHEQEAQIIADAGKLGAVTIATNMAGRGTDIQLGGNVEMKVLEALAADPDADPDTVRAEIEASHADEKQKVLDAGGLYVLATERHESRRIDNQLRGRSGRQGDPGRSSFFLSLEDDLMRIFGSERLDKVLSTLGMKEGEAIEHPWVNKSLERAQAKVEGRNFDIRKQLLKFDDVMNEQRKVIFGQRRDIMESQDQSEIIQDMRYQVIEDLVDDYMPPKSYADQWDTEGLYAEVIKDIGVDVPVMAWADEEGVDNDAIRERLEEASDKYMAEKEEAFGAETMRNIEKQLLLQTIDAKWREHLLTLEHLRSVVGFRGYAQRDPLNEYKSEAFQLFERLLDGLRTDVTQKLAQIRPMSAEEQAQLIEQMRQQQQAAAEAAAQGVERATSDPTGQGSTPREGFVEDDPTTWGSPGRNDPCPCGSGKKFKHCHGRLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QLT7</accession>
    <name>A0A1M5QLT7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cysteine-rich secretory protein family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2199</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15094.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901037.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2199"/>
    <dbReference type="EnsemblBacteria" id="SHH15094">
        <property type="protein sequence ID" value="SHH15094"/>
        <property type="gene ID" value="SAMN05444003_2199"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.33.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014044">
        <property type="entry name" value="CAP_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035940">
        <property type="entry name" value="CAP_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00188">
        <property type="entry name" value="CAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55797">
        <property type="entry name" value="SSF55797"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012861365" evidence="1">
        <location>
            <begin position="20"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="domain" description="SCP" evidence="2">
        <location>
            <begin position="51"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00188"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH15094.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="187" mass="20276" checksum="8102205FDC11EC66" modified="2017-03-15" version="1">MKRRVVLAGLAGFSLAACASTAGRIGPDGLPLPQVYNISAQEPGDIQFRMLDSINALRQAAGVPPVELDAKLNAAAATHARDMSIQNRPWLFGSDGSSPLDRARRVGFEGRVLGENISESYETELETLAAWMNQNDTRAVVLDPNARRIGFSWFQEEAGKLWWTLTVGSDPAEIQPIQSTAQITTPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QNW6</accession>
    <name>A0A1M5QNW6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Peptidoglycan lytic exotransglycosylase</fullName>
            <ecNumber evidence="2">4.2.2.n1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Murein hydrolase A</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_2234</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Exolytic cleavage of the (1-&gt;4)-beta-glycosidic linkage between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc) residues in peptidoglycan, from either the reducing or the non-reducing ends of the peptidoglycan chains, with concomitant formation of a 1,6-anhydrobond in the MurNAc residue.</text>
            <dbReference type="EC" id="4.2.2.n1"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="4.2.2.n1" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15792.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2234"/>
    <dbReference type="EnsemblBacteria" id="SHH15792">
        <property type="protein sequence ID" value="SHH15792"/>
        <property type="gene ID" value="SAMN05444003_2234"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019867">
        <property type="term" value="C:outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009254">
        <property type="term" value="P:peptidoglycan turnover"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd14485">
        <property type="entry name" value="mltA_like_LT_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010611">
        <property type="entry name" value="3D_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026044">
        <property type="entry name" value="MltA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034654">
        <property type="entry name" value="MltA_3D"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005300">
        <property type="entry name" value="MltA_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036908">
        <property type="entry name" value="RlpA-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30124">
        <property type="entry name" value="PTHR30124"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06725">
        <property type="entry name" value="3D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03562">
        <property type="entry name" value="MltA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF019422">
        <property type="entry name" value="MltA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00925">
        <property type="entry name" value="MltA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50685">
        <property type="entry name" value="SSF50685"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="3" id="KW-0456">Lyase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012002496" description="Peptidoglycan lytic exotransglycosylase" evidence="6">
        <location>
            <begin position="22"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="domain" description="MltA" evidence="7">
        <location>
            <begin position="101"/>
            <end position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001420"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012587"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00030918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00925"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH15792.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="342" mass="38210" checksum="FC4B745318A89914" modified="2017-03-15" version="1">MIAKIALAATLVLTTASASMSDVTFTKRSFEDLIGWADDDHQAAVEVFLETCSDINRPEWNRLCAIALDRPNAKDFFELFFQPVEIRDENPTLFTGYFEPEISGSLERTERYRFPIYELPRDLVPGQRYATRQTIEETGLLAGKGLEIAWLEDPVDRFFLQVQGSGRIKLPDGDVLRVGFAGKNGHEYSSVGQALIARGELQAHQVSADAIRNWVRRNPEEGRRLLWVNDSYVFFREVNEVPARRGPLGAMNRSITSMRSIAVDPSINILGAPIWIEKDGENPLQRLMIAQDTGSAIKGAQRADIFYGTGLTAGIEAGRIRDGGRMIMLMPIEYALAKLGED</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QPC2</accession>
    <name>A0A1M5QPC2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 9">DNA mismatch repair protein MutS</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">mutS</name>
        <name evidence="12" type="ORF">SAMN05444003_2214</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8 9">This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 9 10">Belongs to the DNA mismatch repair MutS family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15403.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2214"/>
    <dbReference type="EnsemblBacteria" id="SHH15403">
        <property type="protein sequence ID" value="SHH15403"/>
        <property type="gene ID" value="SAMN05444003_2214"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140664">
        <property type="term" value="F:ATP-dependent DNA damage sensor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003684">
        <property type="term" value="F:damaged DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030983">
        <property type="term" value="F:mismatched DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006298">
        <property type="term" value="P:mismatch repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1170.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00096">
        <property type="entry name" value="MutS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005748">
        <property type="entry name" value="DNA_mismatch_repair_MutS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007695">
        <property type="entry name" value="DNA_mismatch_repair_MutS-lik_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017261">
        <property type="entry name" value="DNA_mismatch_repair_MutS/MSH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000432">
        <property type="entry name" value="DNA_mismatch_repair_MutS_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007861">
        <property type="entry name" value="DNA_mismatch_repair_MutS_clamp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007696">
        <property type="entry name" value="DNA_mismatch_repair_MutS_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016151">
        <property type="entry name" value="DNA_mismatch_repair_MutS_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036187">
        <property type="entry name" value="DNA_mismatch_repair_MutS_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007860">
        <property type="entry name" value="DNA_mmatch_repair_MutS_con_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036678">
        <property type="entry name" value="MutS_con_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045076">
        <property type="entry name" value="MutS_family"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11361">
        <property type="entry name" value="PTHR11361"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01624">
        <property type="entry name" value="MutS_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05188">
        <property type="entry name" value="MutS_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05192">
        <property type="entry name" value="MutS_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05190">
        <property type="entry name" value="MutS_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00488">
        <property type="entry name" value="MutS_V"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037677">
        <property type="entry name" value="DNA_mis_repair_Msh6"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00534">
        <property type="entry name" value="MUTSac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00533">
        <property type="entry name" value="MUTSd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48334">
        <property type="entry name" value="SSF48334"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53150">
        <property type="entry name" value="SSF53150"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55271">
        <property type="entry name" value="SSF55271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01070">
        <property type="entry name" value="mutS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00486">
        <property type="entry name" value="DNA_MISMATCH_REPAIR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 9 10" id="KW-0227">DNA damage</keyword>
    <keyword evidence="7 9 10" id="KW-0234">DNA repair</keyword>
    <keyword evidence="6 9 10" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3 9 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA_MISMATCH_REPAIR_2" evidence="11">
        <location>
            <begin position="703"/>
            <end position="719"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="629"/>
            <end position="636"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006271"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00024647"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00096"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003756"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS00486"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHH15403.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="877" mass="95556" checksum="5512B08DE8ECF7C0" modified="2017-03-15" version="1">MAGKSGNVTPMMAQYLELKAQYADALLFYRMGDFYEMFFDDAVAASSALDIALTKRGKLNDQDIPMCGVPVHAAEGYLLTLIRKGFRVAVCEQMESPEEAKKRGYKAVVKRDVVRLVTPGTLTEDSLLDARRHNYLAAYSEVRDSGALAWVDISTGAFHVMPCPRVSLGPELARLSPRELIVVDGSEAEFQELADDAAISLSSLGGAAFDSTAGEKRMTAFFGVKSLDAFGQFERSEVAALAAILEYLEITQKGKLPLLGSPVREQQNSAMQIDAATRRSLELTQSMQGGRNGSLLSTVDATLTAAGARLLERRISSPSRNLQTLISRLDPVSYFVDRSADGENLRDLLRAVPDVDRALSRLALDRGGPRDLAAIRNAIGQATHLADRIIDDELPELLTFAASSLVGHDDILDLLDQALVAEPPLLARDGGFVAEGYHEELDEMRTLRDEGRSVIAKMQAEYAELAGVSSLKIKHNNVLGYFIETTATHAERMMSEPLNETFIHRQTTANQIRFTTVELSEIETRILNAGGRTLEIEKQIFETLKDTVVGNSAQLNQLSASLAEFDIATSLAALARREQWVRPELDSSRAFEIEGGRHPVVEEALKSSGDPFVANDCSLTDASIWLLTGPNMAGKSTFLRQNALIAVLAQAGSFVPAQSAKIGLVSQIFSRVGASDDLARGRSTFMVEMVETAAILNQADDRALVILDEIGRGTATYDGLSIAWATLEHLHDVNRCRALFATHYHEMSALSAKLDNVDNATVAVKEWEGDVIFLHEVRKGTADRSYGVQVARLAGLPPAVIERAKVVLEALEKGEREGGSNRKAIIDDLPLFAATPPPVAEPAKVSEVEIKLKELLPDELTPKEALNLIYELRGLVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QRI9</accession>
    <name>A0A1M5QRI9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized membrane protein YhaH, DUF805 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2264</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901139.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH16369">
        <property type="protein sequence ID" value="SHH16369"/>
        <property type="gene ID" value="SAMN05444003_2264"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008523">
        <property type="entry name" value="DUF805"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34980">
        <property type="entry name" value="PTHR34980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05656">
        <property type="entry name" value="DUF805"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="26"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="63"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="94"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="122"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH16369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="157" mass="17538" checksum="139D0DB4DC9404C0" modified="2017-03-15" version="1">MNFTEAIRSGFENYANFSGRAQRSAYWYWALFIVLVTLALNVLDTTFFSEFTELEDLANYAPGPLASLWSIAVLIPNLALAVRRLHDRDKSGWFVLLMFIPIVNFYILYLFVTRGTDGPNRFGEDPLGGSGKGSVSVLEKEGDGYSKSNIPPVDPDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QSY8</accession>
    <name>A0A1M5QSY8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2281</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16703.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901164.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH16703">
        <property type="protein sequence ID" value="SHH16703"/>
        <property type="gene ID" value="SAMN05444003_2281"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012951610" evidence="2">
        <location>
            <begin position="23"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="40"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH16703.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="65" mass="6838" checksum="ECD71388D3C1288C" modified="2017-03-15" version="1">MLRGIGNLVVLISILPFSIAAAAGADWHAKYPTDDPDPPRVMFALGLIGPALLVCGMFLRMKGAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QT65</accession>
    <name>A0A1M5QT65_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Capsular polysaccharide transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2298</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17056.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2298"/>
    <dbReference type="EnsemblBacteria" id="SHH17056">
        <property type="protein sequence ID" value="SHH17056"/>
        <property type="gene ID" value="SAMN05444003_2298"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="35"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="366"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="246"/>
            <end position="294"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH17056.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="394" mass="43698" checksum="17D1CEFA9080F334" modified="2017-03-15" version="1">MAKTPAQPKPAENTAPKQSKPIAGPSRKKGRHWGLLLYFVILVVLPIAAAVWYLNTKAVDQYASTVAFTVRSEDVSSATDLLGGLGSTFSGSTSTDTDILYEFIRSQPLVAAVDERVDLKSIYSPPHETDPIFGLNPDSTIEEMTDYWQRMVRVSYDASSGLMELRVLAFNPEDATTLAQVIFEESSAMINDLSAIAREDATRYAREDLDLALERLKGAREALTSFRIANEIVDPSADIQGQVGLVNTLQAQLAEALIELDLLTSSTRAGDPRLVQTEKRVEVIEERIRQERRKFGVGSAVDDSGYATTIAEFERLAVDREFAEQAYGLALAAFDSARAEANRQSRYLAAYIEPTMAEKSEFPQRLLMIFIVALFSFLIWSIGSLAYYALRDRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QUR7</accession>
    <name>A0A1M5QUR7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Molybdopterin or thiamine biosynthesis adenylyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2335</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17894.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901255.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2335"/>
    <dbReference type="EnsemblBacteria" id="SHH17894">
        <property type="protein sequence ID" value="SHH17894"/>
        <property type="gene ID" value="SAMN05444003_2335"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008641">
        <property type="term" value="F:ubiquitin-like modifier activating enzyme activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001763">
        <property type="entry name" value="Rhodanese-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045886">
        <property type="entry name" value="ThiF/MoeB/HesA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000594">
        <property type="entry name" value="ThiF_NAD_FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035985">
        <property type="entry name" value="Ubiquitin-activating_enz"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10953">
        <property type="entry name" value="PTHR10953"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00899">
        <property type="entry name" value="ThiF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69572">
        <property type="entry name" value="SSF69572"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50206">
        <property type="entry name" value="RHODANESE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Rhodanese" evidence="1">
        <location>
            <begin position="246"/>
            <end position="310"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH17894.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="331" mass="35105" checksum="854BF513890074B1" modified="2017-03-15" version="1">MTRYARQMILPEVGQDGQSKLTKAHALIIGAGGLGHPVAQYLTAAGVGQITIIDPDTVELSNLHRQTLFTEAEVGQPKAQTLCTRLAKLNSDVALKAITGTLNPDTAPELIAAADIILDCADSFAASYIASDECLTQGKPLISASALGLQGYVGGFCGTAPPLRAVFPDLPQHLATCATAGVMGPVVGTLGAMQAQMAINTILGLTPSPLGQLMQVDFATLRTYQFRFDTAPEPDTKLTFTTHNQLTPNDFIVDLRETDEAPTPVAPTALRHQVADFDTAHPTPAKGQRAILTCRSGLRAWQAARKLQSYWDGEILLIAMGDTNTNQGTDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QXV7</accession>
    <name>A0A1M5QXV7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_2370</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18600.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2370"/>
    <dbReference type="EnsemblBacteria" id="SHH18600">
        <property type="protein sequence ID" value="SHH18600"/>
        <property type="gene ID" value="SAMN05444003_2370"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013656">
        <property type="entry name" value="PAS_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08448">
        <property type="entry name" value="PAS_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="8" id="KW-0418">Kinase</keyword>
    <keyword evidence="3 4" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Histidine kinase" evidence="6">
        <location>
            <begin position="309"/>
            <end position="518"/>
        </location>
    </feature>
    <feature type="domain" description="Response regulatory" evidence="7">
        <location>
            <begin position="526"/>
            <end position="640"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="5">
        <location>
            <begin position="148"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="4">
        <location>
            <position position="575"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH18600.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="643" mass="69828" checksum="7A0B3B1F58EEF3CB" modified="2017-03-15" version="1">MDRSLPEILNMTLSGLNLITQAISIYDEDLKLVIVNTPFKRMFDLPENLTTAGAAFEDTIRYLAVRGDYGPIDDLETFIAERSEQARTFEPHYLERTRANGTTITIEGSPLRQGGWVAVYSDITSAKQQEALLRDRSANLSEELLARSEELSKTNRNLTATITALEEAKRDLTASQDQLNLTNAMTPAHIARVDKNGVYSYSNRKLASVLPGRPNKIVGMTFAEALGEDVHATIAPAFARTLNGEAPVLEFEHKETGRFIRLAFTPDRSADGPIEGAYLLSMDVTEEVNARQALTHTRRRELAAQLTSGLAHDFSNLLTIILGQNERLLQLDTLPPEAADIAATIKAAAKRGGTLLDGLSQLDTRRPLQIRPAHIASFVDGFRALSQAAIPEDIALTIQNDITDPYLMLDEGFAQDTLLNLTLNAVDAINGAGEIDIHLRKAGAASFEITVQDDGPGFSDEALKTALAPFYTTKTDGLGRGLGLSSAFDFAKSSNGNIRLANAPAGGARVTIRLPYLTAEPPAPGLVLLIEDSEDVRQTIRGYLQRMGHAVIEADNMAEALTLIKLPDITYIVTDLMLGNDGTGFDLLQKLRANGNDLPALVITGLDATNCLRQTVERSYPVLQKPFDYNALAAHLQGTSHGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QYN5</accession>
    <name>A0A1M5QYN5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative photosynthetic complex assembly protein 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2405</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19265.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901366.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2405"/>
    <dbReference type="EnsemblBacteria" id="SHH19265">
        <property type="protein sequence ID" value="SHH19265"/>
        <property type="gene ID" value="SAMN05444003_2405"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017496">
        <property type="entry name" value="Photo_alph_chp2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12291">
        <property type="entry name" value="DUF3623"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03055">
        <property type="entry name" value="photo_alph_chp2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="38"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="67"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="111"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="178"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="213"/>
            <end position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH19265.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="265" mass="28961" checksum="095549167769BA1A" modified="2017-03-15" version="1">MSSPWIAAAIAVFAWWVSTGAILYAVHRADDQGAKARRGIVLLTAPVALIGFLMVRGSLEPMTVGNVYLSFFGALMVWGWIELSFLTGYVTGPNRKPLSPNGSRFLQAFKAVAFHEIMLLAGLLTMIAISAQAENRIGMACFLILFIARIMAKLNLFFGVPRINTEFIPSGLIHLTTYFRQGPITFAFPVAITILTAVLAVCAERLMNAQSDVTVVGFGLLTALTALALLEHWLMVVPLPDAKLWRWLLPSSPAIPEEESKTHGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QZQ1</accession>
    <name>A0A1M5QZQ1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 13">5-aminolevulinate synthase</fullName>
            <ecNumber evidence="6 13">2.3.1.37</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9 13">5-aminolevulinic acid synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10 13">Delta-ALA synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11 13">Delta-aminolevulinate synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">SAMN05444003_2406</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 13">
            <text>glycine + H(+) + succinyl-CoA = 5-aminolevulinate + CO2 + CoA</text>
            <dbReference type="Rhea" id="RHEA:12921"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57292"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:356416"/>
            <dbReference type="EC" id="2.3.1.37"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 12">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3 13">Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; 5-aminolevulinate from glycine: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 12">Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.37" evidence="6 13"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19280.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901367.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2406"/>
    <dbReference type="EnsemblBacteria" id="SHH19280">
        <property type="protein sequence ID" value="SHH19280"/>
        <property type="gene ID" value="SAMN05444003_2406"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00251">
        <property type="reaction ID" value="UER00375"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003870">
        <property type="term" value="F:5-aminolevulinate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006782">
        <property type="term" value="P:protoporphyrinogen IX biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010961">
        <property type="entry name" value="4pyrrol_synth_NH2levulA_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001917">
        <property type="entry name" value="Aminotrans_II_pyridoxalP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01821">
        <property type="entry name" value="5aminolev_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00599">
        <property type="entry name" value="AA_TRANSFER_CLASS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 13" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="7 13" id="KW-0350">Heme biosynthesis</keyword>
    <keyword evidence="12" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="13" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="14">
        <location>
            <begin position="46"/>
            <end position="390"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001588"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00008392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00013257"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00031691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00031945"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00032773"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU003693"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU910713"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="SHH19280.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="404" mass="44174" checksum="3B8EDAD73244EBF3" modified="2017-03-15" version="1">MDFDALFDAQLDQLKADGNYRYFAELERKCGKFPKAANHREEGVRDVTVWCSNDYLGMGQHPAVIAAMCEAVERTGTGAGGTRNISGTNHDHLLLERELADLHGKESALLFTSGYVSNWTALSTLGSRLDNCVILSDAGNHASMIEGIRHSKAQKVIWKHNDVVDLEEKLAALPADVPKIVAFESVYSMDGDIAPIREIVEVAEKYGAMTYLDEVHAVGLYGPRGGGVSERDGLADRITLIEGTLGKAYGVVGGYITGSASLCDFIRSFASGFIFTTALPPAVAAAARTSIAHLKASSAERTRQRRQVARLRARLDQAGIPHMENESHIVPVMIGDPVKTRMLADYLMREWDIYVQPINYPTVPKGTERLRFTPSPLHTDEDIDHLVTALEVLWAQCAVSHAVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RFG8</accession>
    <name>A0A1M5RFG8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">L,D-transpeptidase catalytic domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2559</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the YkuD family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25011.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901675.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2559"/>
    <dbReference type="EnsemblBacteria" id="SHH25011">
        <property type="protein sequence ID" value="SHH25011"/>
        <property type="gene ID" value="SAMN05444003_2559"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071972">
        <property type="term" value="F:peptidoglycan L,D-transpeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd16913">
        <property type="entry name" value="YkuD_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005490">
        <property type="entry name" value="LD_TPept_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038063">
        <property type="entry name" value="Transpep_catalytic_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03734">
        <property type="entry name" value="YkuD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141523">
        <property type="entry name" value="SSF141523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="YkuD" evidence="4">
        <location>
            <begin position="20"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF03734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH25011.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="164" mass="18790" checksum="DCB2BE3135EF0CE6" modified="2017-03-15" version="1">MKATDLVVMPTHVRFMGRRFPRTIGSGGLTNSKAEGDGATPRGTHRIVGMLYRPDRMSQPADWALPIRPGDLWSDDPKHEDYNLMVRAPYAYSHENLRRADPMYDLILITDWNWPYAVKGRGSAIFLHQWRGPGRPTAGCVAFRRDHLLWIASRIRHETRLVIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RGJ0</accession>
    <name>A0A1M5RGJ0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Carbohydrate ABC transporter membrane protein 1, CUT1 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2573</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25308.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2573"/>
    <dbReference type="EnsemblBacteria" id="SHH25308">
        <property type="protein sequence ID" value="SHH25308"/>
        <property type="gene ID" value="SAMN05444003_2573"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="27"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="86"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="120"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="169"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="215"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="277"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="83"/>
            <end position="296"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH25308.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="307" mass="34134" checksum="7E399E665D9F25B0" modified="2017-03-15" version="1">MAVTDTGRMDVGAKRPSRLFKNMTAKIAAIPMIATALVVFIGCTAWTIYHSFTRSRLLPAPDKWTGLQNYDRLWSENRWLVSIENLAIFGSCSLVLSLVIGFILAALLDRKIRFENTIRTIILYPFALSFVVTGLVWQWLLNPDLGLQNVVRSWGWETFTFDPLNNADIVIYGILIAGIWQGSGFVMVLMLAGMRGIDEDVWKASRVEGIPTWKTYIFIVIPMMRPVFVTALVIISAGIIKVYDLVVAQTSGGPGIASEVPAKYVIDKMFGSQNLGLGFAASTMMLLSVLVVLIPWAYLEFGGKKER</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RHK3</accession>
    <name>A0A1M5RHK3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA translocase FtsK</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">SAMN05444003_2591</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Essential cell division protein that coordinates cell division and chromosome segregation. The N-terminus is involved in assembly of the cell-division machinery. The C-terminus functions as a DNA motor that moves dsDNA in an ATP-dependent manner towards the dif recombination site, which is located within the replication terminus region. Translocation stops specifically at Xer-dif sites, where FtsK interacts with the Xer recombinase, allowing activation of chromosome unlinking by recombination. FtsK orienting polar sequences (KOPS) guide the direction of DNA translocation. FtsK can remove proteins from DNA as it translocates, but translocation stops specifically at XerCD-dif site, thereby preventing removal of XerC and XerD from dif.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Homohexamer. Forms a ring that surrounds DNA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the FtsK/SpoIIIE/SftA family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25688.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901721.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2591"/>
    <dbReference type="EnsemblBacteria" id="SHH25688">
        <property type="protein sequence ID" value="SHH25688"/>
        <property type="gene ID" value="SAMN05444003_2591"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025199">
        <property type="entry name" value="FtsK_4TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041027">
        <property type="entry name" value="FtsK_alpha"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002543">
        <property type="entry name" value="FtsK_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018541">
        <property type="entry name" value="Ftsk_gamma"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13491">
        <property type="entry name" value="FtsK_4TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17854">
        <property type="entry name" value="FtsK_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09397">
        <property type="entry name" value="FtsK_gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01580">
        <property type="entry name" value="FtsK_SpoIIIE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00843">
        <property type="entry name" value="Ftsk_gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50901">
        <property type="entry name" value="FTSK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8 13" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 13" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 13" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="28"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="69"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="109"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="139"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="167"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="domain" description="FtsK" evidence="14">
        <location>
            <begin position="619"/>
            <end position="838"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="445"/>
            <end position="479"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="636"/>
            <end position="643"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006474"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00020887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00024784"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00025923"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00289"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS50901"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="SHH25688.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="983" mass="106364" checksum="6F3D9B9F7D09F765" modified="2017-03-15" version="1">MASYSTRQRDPLLDSTTQAAIEKRSKELMGLVLIVLGLLAAAMIATYSAQDPSWMSATDAPIQNWLGMFGAATAAPIMMIVGKGIWVVPLAMIAWGLRFVLHWGEERAIGRLIYTPFALAAASLYAATLTPPADWPANFGYGGLFGDTVLAVALTVIPFGTILSVKLMSVLLGLLTLALTAFALGFTRPELRSGGRFVFLGTVLIYDFLMRMIGKGAATSATLAKGAGSTFAAHRAERRANKEALATAYAQEEVVEQGDLPDAKRRAAAVVRANPAMPTTPGDGRNMPPVLRATREYTEEPTPVAETPQPAPTGFLSGLLKRNEPMPQPELVDTHTAVEAEAPDSDRISARISDAIKSRAGGVVPPAQTTARIEPRLTAGRGPTPLLLNTDPQPQEVELIEAVEDETVIDTPAATPTAPIYRRSAEEIEDAALLVAEPLFETERAAPTAPRVVQPTPKKPQPSKRAKAEEQPSLQFEDKYPGYEHPPLSLLTNPSMVQRHHLSDEALEENARMLESVLDDYGVKGEIVSVRPGPVVTMYELEPAPGLKASRVIGLSDDIARSMSALSARVSTVPGRTVIGIELPNENREKVVLREILSHRDYGDGNQKLPLALGKDIGGEPIVANLAKMPHLLIAGTTGSGKSVAINTMILSLLYKLTPEECRMIMIDPKMLELSVYDGIPHLLSPVVTDPKKAVVALKWVVGEMEERYRKMSKMGVRNIDGYNGRVKDALSKNEMFSRTVQTGFDDETGDPVFETEEFKPEVLPYIVVIVDEMADLMMVAGKEIEACIQRLAQMARASGIHLIMATQRPSVDVITGTIKANFPTRISFQVTSKIDSRTILGEMGAEQLLGMGDMLYMAGGSKITRVHGPFCSDEEVEEIVNHLKSFGPPEYMSGVVDGPAEDKESDIDAVLGLGGNTNGEDALYDQAVAIVIKDRKCSTSYIQRKLAIGYNKAARLVEQMEESGLVSPANHVGKREILVPEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RIH2</accession>
    <name>A0A1M5RIH2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">UPF0434 protein SAMN05444003_2587</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2587</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0434 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25603.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901715.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2587"/>
    <dbReference type="EnsemblBacteria" id="SHH25603">
        <property type="protein sequence ID" value="SHH25603"/>
        <property type="gene ID" value="SAMN05444003_2587"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01187">
        <property type="entry name" value="UPF0434"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005651">
        <property type="entry name" value="Trm112-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03966">
        <property type="entry name" value="Trm112p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH25603.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="59" mass="6569" checksum="3CB85B6C612012AF" modified="2017-03-15" version="1">MSEMSFDPKMLEALVCPQTQASLSYDADKQELISKPANLAFPLRDGIPVMLVDEARQLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RL14</accession>
    <name>A0A1M5RL14_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Heat shock protein HslJ</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2644</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26859.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901807.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2644"/>
    <dbReference type="EnsemblBacteria" id="SHH26859">
        <property type="protein sequence ID" value="SHH26859"/>
        <property type="gene ID" value="SAMN05444003_2644"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.128.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005184">
        <property type="entry name" value="DUF306_Meta_HslJ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038670">
        <property type="entry name" value="HslJ-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03724">
        <property type="entry name" value="META"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0346">Stress response</keyword>
    <feature type="domain" description="META" evidence="1">
        <location>
            <begin position="30"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH26859.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="128" mass="13819" checksum="CA12CB36DABBA4CB" modified="2017-03-15" version="1">MRYFSLAVPVLLAACNEDETVSGYVGDSTIFALQSINEQPFQASATIDLSETGKVSGEGPCNSYSAEQSAPYPWFDLGPIAATERACEKLPAEGTFFQALERMTIAEVNGPILILTNDAKEEMVFEAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RL69</accession>
    <name>A0A1M5RL69_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="9">(2S)-methylsuccinyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_2646</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26909.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901811.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2646"/>
    <dbReference type="EnsemblBacteria" id="SHH26909">
        <property type="protein sequence ID" value="SHH26909"/>
        <property type="gene ID" value="SAMN05444003_2646"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003995">
        <property type="term" value="F:acyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006089">
        <property type="entry name" value="Acyl-CoA_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00073">
        <property type="entry name" value="ACYL_COA_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="177"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="295"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="409"/>
            <end position="558"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH26909.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="559" mass="61324" checksum="2C21EB4450B1358B" modified="2017-03-15" version="1">MPHDGQDMPMTPPVLLPDLLDLTAEAVPAAEHVLEIALEAVRATVSVDGRVSNGLIEANQTASHGLAWLATYVESLRQMQKWAAKLDGEGKFGETEQLIHQIAFGEYLLQIQGGIQMNQGEILRLQDLDIDLGETFEIEAVETLMASGNTQAARSRLAVLIEETSANLTVGASGLDEELEMIREQFRRFSVDRVEPYAHEWHLKDELIPMEIIEEMAELGVFGLTIPEEFGGFGLSKASMCVVSEELSRGYIGVGSLGTRSEIAAELIICGGTYEQKAKWLPGLASGEILPTAVFTEPNTGSDLGSLRTKARKEDDDWIISGNKTWITHAARTHVMTVLARTIPDTDDYKGLSMFLAEKTPGTDEDPWQDPGISGGEIEVLGYRGMKEYTLNFDDFKVNGENLLGQVEGQGFKQLMQTFESARIQTAARAVGVAQSALDEGLQYARDRKQFGKALINFPRVSGKLAMMAVEIMIARQLTYFSAHEKDNDRRCDLEAGMAKLLGARVAWACADNALQIHGGNGFALEYKISRILCDARILNIFEGAAEIQAQVIARRLLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RL79</accession>
    <name>A0A1M5RL79_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_2649</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26971.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901817.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2649"/>
    <dbReference type="EnsemblBacteria" id="SHH26971">
        <property type="protein sequence ID" value="SHH26971"/>
        <property type="gene ID" value="SAMN05444003_2649"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025908">
        <property type="entry name" value="Sensor_TM1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13755">
        <property type="entry name" value="Sensor_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 9" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="66"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="273"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="8">
        <location>
            <begin position="290"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="7">
        <location>
            <begin position="358"/>
            <end position="580"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH26971.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="580" mass="62895" checksum="320DDBE2A3768030" modified="2017-03-15" version="1">MSDVTEIDVRDLNSVRRAAKKDAGTPDVVLGDDWVQPQGVGDNELAEGRRKRGLYNLRKSPLARKIITFNLIAMILLIAGVLYLNPSRDNLAYQRANGLVNEAELIADVLEARMPATVPVNLMTGDGIDVVETLEQMDLRGGIDVVVFDADGTLVASAVGAADVSSISGLNRNESDTILTDFLASTWNGVANSFRNIFGDWREERGGPDQDAVLSAMNMGTSVQTQNDASGTTFVVITPVMQGDSPVGAVAISSAAGELDALVRREREQVLRLFLVGIFISVGLSLVLASTIANPLADLAAAAELGRDKNARKLSPTQVRIPDLTGRPDEIGRLSGALRGMVQALSERIEGNEQFAADVAHEIKNPLASLRSAVGTMRVATRDDQRERLLEVIEHDVRRLDRLVSDISNASRLDSELVREQEESFDLLKMLGNLNEFLGKEARDKGIEYIADIPEEPITVVGLEGRLAQVFVNLITNAISFCEDGDAIRVWARQRENRVLVVVEDTGPGIPNEALSKVFQRFYSERPEGQFGNNSGLGLAISKQIIEAHGGVIWAENIRPTEADMTSEPLGARFVVGLPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RME0</accession>
    <name>A0A1M5RME0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Immunity protein 27</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2664</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH27340.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH27340">
        <property type="protein sequence ID" value="SHH27340"/>
        <property type="gene ID" value="SAMN05444003_2664"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028960">
        <property type="entry name" value="Imm27"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15590">
        <property type="entry name" value="Imm27"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH27340.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="85" mass="9582" checksum="5CB794542BFC2BEA" modified="2017-03-15" version="1">MSKDQLVGSWVLQDGAMKLDHLAEEIERRIREEFKSIATADWSGLFVDTDGDYWELTCPKSESHGGGAKCLTKIKEIAARSVYDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RMS9</accession>
    <name>A0A1M5RMS9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Corrinoid adenosyltransferase</fullName>
            <ecNumber evidence="4">2.5.1.17</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Cob(II)alamin adenosyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Cob(II)yrinic acid a,c-diamide adenosyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Cobinamide/cobalamin adenosyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2659</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>2 ATP + 2 cob(II)alamin + reduced [electron-transfer flavoprotein] = 2 adenosylcob(III)alamin + 3 H(+) + oxidized [electron-transfer flavoprotein] + 2 triphosphate</text>
            <dbReference type="Rhea" id="RHEA:28671"/>
            <dbReference type="Rhea" id="RHEA-COMP:10685"/>
            <dbReference type="Rhea" id="RHEA-COMP:10686"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16304"/>
            <dbReference type="ChEBI" id="CHEBI:18036"/>
            <dbReference type="ChEBI" id="CHEBI:18408"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
            <dbReference type="ChEBI" id="CHEBI:58307"/>
            <dbReference type="EC" id="2.5.1.17"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>2 ATP + 2 cob(II)yrinate a,c diamide + reduced [electron-transfer flavoprotein] = 2 adenosylcob(III)yrinate a,c-diamide + 3 H(+) + oxidized [electron-transfer flavoprotein] + 2 triphosphate</text>
            <dbReference type="Rhea" id="RHEA:11528"/>
            <dbReference type="Rhea" id="RHEA-COMP:10685"/>
            <dbReference type="Rhea" id="RHEA-COMP:10686"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:18036"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
            <dbReference type="ChEBI" id="CHEBI:58307"/>
            <dbReference type="ChEBI" id="CHEBI:58503"/>
            <dbReference type="ChEBI" id="CHEBI:58537"/>
            <dbReference type="EC" id="2.5.1.17"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4">Cofactor biosynthesis; adenosylcobalamin biosynthesis; adenosylcobalamin from cob(II)yrinate a,c-diamide: step 2/7.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the Cob(I)alamin adenosyltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.17" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH27203.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2659"/>
    <dbReference type="EnsemblBacteria" id="SHH27203">
        <property type="protein sequence ID" value="SHH27203"/>
        <property type="gene ID" value="SAMN05444003_2659"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00148">
        <property type="reaction ID" value="UER00233"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008817">
        <property type="term" value="F:cob(I)yrinic acid a,c-diamide adenosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1200.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016030">
        <property type="entry name" value="CblAdoTrfase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036451">
        <property type="entry name" value="CblAdoTrfase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029499">
        <property type="entry name" value="PduO-typ"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12213">
        <property type="entry name" value="PTHR12213"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01923">
        <property type="entry name" value="Cob_adeno_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89028">
        <property type="entry name" value="SSF89028"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00636">
        <property type="entry name" value="PduO_Nterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Cob_adeno_trans" evidence="5">
        <location>
            <begin position="16"/>
            <end position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU366026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01923"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH27203.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="199" mass="21943" checksum="1D6F74565F7D47F8" modified="2017-03-15" version="1">MSGYAEEIDLVVLNKIYTKTGDAGETALGNGARVAKHSLRVNSYGTVDELNATVGLARLHAEGQADDMLAMIQNDLFDLGADLCRPDMEKDHESEYPVLRMSAAQVERLESELDEMTQAVEPLRSFILPGGSPLAAHMHLCRTVARRAERLTVELATVESINPSAVKYLNRLSDWFFQASRIANDDGRNDVLWVPGANR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RXQ2</accession>
    <name>A0A1M5RXQ2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2757</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31147.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902030.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH31147">
        <property type="protein sequence ID" value="SHH31147"/>
        <property type="gene ID" value="SAMN05444003_2757"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH31147.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="295" mass="32504" checksum="287408EFD03B4221" modified="2017-03-15" version="1">MDSWDEIKTAFHVARAGTVSGAAETLGVHHATVIRHIDALEGRLGVKLFQRHARGYTPTEAGSDLLQVAETTDDQFSQLEGRIKGLGQGVSGDLVVTTLGNLGGLLAPVLVEYQVENPDVRVRLLTGDRLFRLEYGEAHVAIRAGAMPEEPDNVVQPFMAQRMALVASKSYIERRGLPVSEEDLVNHDFVGHDNDESRAPFNRWLRDFVPAERIVFRATDSRVMREAILAGAGIGFVSGYDADVNGDFLEVIASKDSWSAPLWLVTHVDLHRTAKVQSFLSFLKSRAEEWKASEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RYI5</accession>
    <name>A0A1M5RYI5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Outer membrane protein OmpA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2767</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31412.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902047.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2767"/>
    <dbReference type="EnsemblBacteria" id="SHH31412">
        <property type="protein sequence ID" value="SHH31412"/>
        <property type="gene ID" value="SAMN05444003_2767"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07185">
        <property type="entry name" value="OmpA_C-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039567">
        <property type="entry name" value="Gly-zipper"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006664">
        <property type="entry name" value="OMP_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006665">
        <property type="entry name" value="OmpA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006690">
        <property type="entry name" value="OMPA-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036737">
        <property type="entry name" value="OmpA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13488">
        <property type="entry name" value="Gly-zipper_Omp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00691">
        <property type="entry name" value="OmpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01021">
        <property type="entry name" value="OMPADOMAIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103088">
        <property type="entry name" value="SSF103088"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01068">
        <property type="entry name" value="OMPA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51123">
        <property type="entry name" value="OMPA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="1 3" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012251751" evidence="4">
        <location>
            <begin position="20"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="domain" description="OmpA-like" evidence="5">
        <location>
            <begin position="100"/>
            <end position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH31412.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="217" mass="21995" checksum="09B25F14E97E03F4" modified="2017-03-15" version="1">MALTKFPLLLAAGSLAFVAACDGSSPNNNQNAQQGALIGAGVGALTGILTGDSVQDRRRGAVFGAALGAAGGAAIGNQLDQQEEELRASLGNNVGIVNNGQNLTVTLAEDILFATESTAVSAASQTELQTLAGSINRFPDTSVSVIGHTDNTGSAEFNLDLSQRRAQAVSSVLIGSGVSPTRIASIGRGEDAPVATNLTEEGRQANRRVEVVIIPNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RZZ4</accession>
    <name>A0A1M5RZZ4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycolate oxidase FAD binding subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2782</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2782"/>
    <dbReference type="EnsemblBacteria" id="SHH31721">
        <property type="protein sequence ID" value="SHH31721"/>
        <property type="gene ID" value="SAMN05444003_2782"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016166">
        <property type="entry name" value="FAD-bd_PCMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016164">
        <property type="entry name" value="FAD-linked_Oxase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006094">
        <property type="entry name" value="Oxid_FAD_bind_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01565">
        <property type="entry name" value="FAD_binding_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55103">
        <property type="entry name" value="SSF55103"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51387">
        <property type="entry name" value="FAD_PCMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding PCMH-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH31721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="371" mass="38948" checksum="A9C67F496356AE53" modified="2017-03-15" version="1">MIEPKTEAELAEALKSANGPLRISGGGTRDYGRPVQGEVISTSKLSGITLYEPGALTIVAQAGTPVSEIEAELAKNNQRLAFEPMDHRAILGQEGSPTIGGVIAANVSGPRRISVGAARDFLLGVRFVDGEGKIIKNGGRVMKNVTGYDLVKLMAGSFGTLGILTEVSLKVMPADETAATLILNGLDVEQAVAAMSSALGSPYDVTGAAHIPASGHTVVRIEGFEKSVAYRTEKLTQHLSAIGTAEIISGDAHDLLWQDVRDAKALSGAEGDIWRVSVKPSDGPAVIQAVNPTSYLMDWGGGLIWMETPSGTDVRALIPDIAGHSTLIKASPAIRSEIATFQPEPKPLALISNELRSKFDPRGILNPGLMS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S0K6</accession>
    <name>A0A1M5S0K6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2799</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32127.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902092.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH32127">
        <property type="protein sequence ID" value="SHH32127"/>
        <property type="gene ID" value="SAMN05444003_2799"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="36"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="80"/>
            <end position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH32127.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="111" mass="12347" checksum="28104FF9A53127EB" modified="2017-03-15" version="1">MLLDGLFFPAVILAVLSWMVPKLLSFVMPEGVKPLLLLALLSTLILFLLSSVFFFVLYLWQGATLARLAEGGLSTNILLFGRLGMIAGMIWAPIMVLSVAALPRRWKKEVW</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S1H1</accession>
    <name>A0A1M5S1H1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 10">Ribulose-phosphate 3-epimerase</fullName>
            <ecNumber evidence="7 10">5.1.3.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">rpe</name>
        <name evidence="11" type="ORF">SAMN05444003_2806</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>D-ribulose 5-phosphate = D-xylulose 5-phosphate</text>
            <dbReference type="Rhea" id="RHEA:13677"/>
            <dbReference type="ChEBI" id="CHEBI:57737"/>
            <dbReference type="ChEBI" id="CHEBI:58121"/>
            <dbReference type="EC" id="5.1.3.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Co(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:48828"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
        <text evidence="10">Binds 1 divalent metal cation per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="10">Carbohydrate degradation.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6 10">Belongs to the ribulose-phosphate 3-epimerase family.</text>
    </comment>
    <dbReference type="EC" id="5.1.3.1" evidence="7 10"/>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32299.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2806"/>
    <dbReference type="EnsemblBacteria" id="SHH32299">
        <property type="protein sequence ID" value="SHH32299"/>
        <property type="gene ID" value="SAMN05444003_2806"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00164"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004750">
        <property type="term" value="F:D-ribulose-phosphate 3-epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019323">
        <property type="term" value="P:pentose catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006098">
        <property type="term" value="P:pentose-phosphate shunt"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00429">
        <property type="entry name" value="RPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02227">
        <property type="entry name" value="RPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026019">
        <property type="entry name" value="Ribul_P_3_epim"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000056">
        <property type="entry name" value="Ribul_P_3_epim-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11749">
        <property type="entry name" value="PTHR11749"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00834">
        <property type="entry name" value="Ribul_P_3_epim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="SSF51366"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01163">
        <property type="entry name" value="rpe"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01085">
        <property type="entry name" value="RIBUL_P_3_EPIMER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="9 10" id="KW-0413">Isomerase</keyword>
    <keyword evidence="8 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="10">
        <location>
            <begin position="175"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="10">
        <location>
            <begin position="205"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="10">
        <location>
            <begin position="227"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="10">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="10">
        <location>
            <position position="205"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="41"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="66"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="68"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="99"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="205"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00001954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00009541"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00013188"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH32299.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="253" mass="26780" checksum="947F92B3B961815B" modified="2017-03-15" version="1">MQLQQKPVLYVTTKFLLGKGRLDAIFGGKMTFDRSIKIAPSILAADFANFGAECEAVEAQGADWIHVDVMDGHFVPNITFGPATCKAIRPHIKGVMDVHLMIAPVDPYIQDFADAGADVITAHVEAGPHIHRTLQAIRAAGCKAGVALNPATPASSVEELLDDVDLVCVMTVNPGFGGQSFIDMTSKIRNLRSMIGDRPVHIEIDGGVDPKTAQLVVEAGADVLVAGSAVFRGGSVSNPAPYGDNIRAIRNAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S2J0</accession>
    <name>A0A1M5S2J0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Selenium-binding protein 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2827</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the selenium-binding protein family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32817.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902133.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2827"/>
    <dbReference type="EnsemblBacteria" id="SHH32817">
        <property type="protein sequence ID" value="SHH32817"/>
        <property type="gene ID" value="SAMN05444003_2827"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008430">
        <property type="term" value="F:selenium binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008826">
        <property type="entry name" value="Se-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23300">
        <property type="entry name" value="PTHR23300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05694">
        <property type="entry name" value="SBP56"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH32817.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="450" mass="50548" checksum="AB483CA874E1B591" modified="2017-03-15" version="1">MSECCGPGYASPAEAIQSPREELLYTIAIYTGTGIQKPDYLATVDVDPQSPTYSQVIHRLEMPGIGDELHHMGWNACSSCHDDSSMARKYLILPGVRSNNLHIVDTATDPRAPRLHKVIEGAEIKAKADLSGPHTVHCLGSEIIISFLGNAKGEAPGGYLHLDKDFNIVGRWENSMGDIKFGYDFWYQPRHNIMVSSEWAAPNTFMPGFDLEEVGHLKYGRELHFWDFEKREPIESFYLGEDGLLPLEVKFHHDPDSTHGFCGAALSSNVIHWWKGDDDKWQWEKIIDVENEMHPEWPIPLPGVMSAILISMDDKYLYLNNWLHGDMRQYDITDPHNPVLTGQVYMGGLLGKAPKVNGVEVAGGPQMFQLSLDGRRLYVTTSLFSTWDNQFYPEIRTKGGVMVMIDCDPENGGMSINPDFLVDFGQEPNGPSRCHESRYPGGDCTSDIWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S5T6</accession>
    <name>A0A1M5S5T6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Choline dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2870</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the GMC oxidoreductase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33861.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902205.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2870"/>
    <dbReference type="EnsemblBacteria" id="SHH33861">
        <property type="protein sequence ID" value="SHH33861"/>
        <property type="gene ID" value="SAMN05444003_2870"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016614">
        <property type="term" value="F:oxidoreductase activity, acting on CH-OH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012132">
        <property type="entry name" value="GMC_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000172">
        <property type="entry name" value="GMC_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007867">
        <property type="entry name" value="GMC_OxRtase_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11552">
        <property type="entry name" value="PTHR11552"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05199">
        <property type="entry name" value="GMC_oxred_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00732">
        <property type="entry name" value="GMC_oxred_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000137">
        <property type="entry name" value="Alcohol_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00623">
        <property type="entry name" value="GMC_OXRED_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00624">
        <property type="entry name" value="GMC_OXRED_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GMC_OxRdtase_N" evidence="4">
        <location>
            <begin position="82"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="domain" description="GMC_OxRdtase_N" evidence="5">
        <location>
            <begin position="251"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="84"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010790"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000137-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS00623"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS00624"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH33861.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="531" mass="57444" checksum="D816AE1FA26CB95F" modified="2017-03-15" version="1">MSDKGYDFIVIGGGSAGSVVASRLSENPDVTVLLLEAGGSDRHPFFHLPAGFAKMTKGIGSWGWSTVPQRSMQNKVFNYTQAKVIGGGSAINAQIYTRGAVQDYDEWRQLGCEGWSYQDVLPYFKKSEDNDTYEGEFHGKGGPLGVSMPSAPLPICDAFIEAAAQLGIPKTTDVNGARQDGAGYYQLTQRNARRSSAAMAFLAPARSRPNLTVQMQAQGRRIKVEGGKVVGVEMADGTMIHADREVILSSGAIGSPRLLQLSGIGPADHLKSIGIDVVFDQPEVGLNLQDHLDLYAICEVTGPHTYDRYAKLHLSAFAGLQYLFTRKGPVASSLFETGGFWYADENARSPDIQMHLGLGTGIEAGVEAMPNGGVTLNACHLRPRSRGSVRLKSDNPADMPLIDPNYLSDPYDREMSIRGLKLVQNILSQDALKPYILAERLPGPDVQTDKDYFNFICVHSKTSHHCAGTCRMGSDDAAVLDPRLRFKGIDGLRVADASIMPQVNSSNTNAPSIMIGEKAADMIKQDQGMMP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SGK8</accession>
    <name>A0A1M5SGK8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Ribosomal protein S12 methylthiotransferase RimO</fullName>
            <shortName evidence="7">S12 MTTase</shortName>
            <shortName evidence="7">S12 methylthiotransferase</shortName>
            <ecNumber evidence="7">2.8.4.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Ribosome maturation factor RimO</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rimO</name>
        <name evidence="12" type="ORF">SAMN05444003_2960</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>[sulfur carrier]-SH + AH2 + L-aspartate(89)-[ribosomal protein uS12]-hydrogen + 2 S-adenosyl-L-methionine = 3-methylsulfanyl-L-aspartate(89)-[ribosomal protein uS12]-hydrogen + 5'-deoxyadenosine + [sulfur carrier]-H + A + 2 H(+) + L-methionine + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:37087"/>
            <dbReference type="Rhea" id="RHEA-COMP:10460"/>
            <dbReference type="Rhea" id="RHEA-COMP:10461"/>
            <dbReference type="Rhea" id="RHEA-COMP:14737"/>
            <dbReference type="Rhea" id="RHEA-COMP:14739"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:29917"/>
            <dbReference type="ChEBI" id="CHEBI:29961"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:64428"/>
            <dbReference type="ChEBI" id="CHEBI:73599"/>
            <dbReference type="EC" id="2.8.4.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="7">Binds 2 [4Fe-4S] clusters. One cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the methylthiotransferase family. RimO subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.8.4.4" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37674.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902382.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2960"/>
    <dbReference type="EnsemblBacteria" id="SHH37674">
        <property type="protein sequence ID" value="SHH37674"/>
        <property type="gene ID" value="SAMN05444003_2960"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0103039">
        <property type="term" value="F:protein methylthiotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018339">
        <property type="term" value="P:peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006400">
        <property type="term" value="P:tRNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01865">
        <property type="entry name" value="MTTase_RimO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005839">
        <property type="entry name" value="Methylthiotransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013848">
        <property type="entry name" value="Methylthiotransferase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038135">
        <property type="entry name" value="Methylthiotransferase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005840">
        <property type="entry name" value="Ribosomal_S12_MeSTrfase_RimO"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041582">
        <property type="entry name" value="RimO_TRAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002792">
        <property type="entry name" value="TRAM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43837">
        <property type="entry name" value="PTHR43837"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18693">
        <property type="entry name" value="TRAM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00919">
        <property type="entry name" value="UPF0004"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01061">
        <property type="entry name" value="methylthiotransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00274">
        <property type="entry name" value="ribosomal_protein_S12_methylth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00089">
        <property type="entry name" value="TIGR00089"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01125">
        <property type="entry name" value="TIGR01125"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51449">
        <property type="entry name" value="MTTASE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50926">
        <property type="entry name" value="TRAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 7" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 7" id="KW-0408">Iron</keyword>
    <keyword evidence="6 7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="4 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="12" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 7" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 7 12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="MTTase N-terminal" evidence="10">
        <location>
            <begin position="27"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="domain" description="Radical SAM core" evidence="11">
        <location>
            <begin position="154"/>
            <end position="393"/>
        </location>
    </feature>
    <feature type="domain" description="TRAM" evidence="9">
        <location>
            <begin position="396"/>
            <end position="464"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="36"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="72"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="101"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="168"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="172"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="175"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01865"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51449"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHH37674.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="466" mass="51520" checksum="FF486621A12A96F2" modified="2017-03-15" version="1">MTQNPPNLRPDLAPKAKLSEAPRDGQPTIGMVSLGCPKALVDSERILTRLRAEGYAISPDYQGAEAVIVNTCGFLDSAKAESLDAIGEALQENGRVIVTGCLGAEPEYIRAHHPQILAVTGPHQYEQVLDAVHDTVPPAPDPFIDLLPAQNVSLTPRHYSYLKISEGCNHKCKFCIIPDMRGRLASRPAHAVLREAEKLVDAGVKELLVISQDTSAYGLDRKYDVNPWKDGEVRSHITDLTRELGQLGAWVRLHYVYPYPHVRDLIPIMADPSNGVLPYLDIPFQHAHPDVLRRMARPAAAARTLDEIKAWRSECPEITLRSTFIVGYPGETEAEFQHLLDWLDEAQLDRVGCFQYENVAGARSNDLPDHVPDDVKQDRWDRFMAKSQAISEAKLAAKVGKVLEVIVDDIDEDGVATCRTWADAPEIDGNLFIDEGTDGLSVGDVIRVEVDEAGEYDLWGCVASRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SI11</accession>
    <name>A0A1M5SI11_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2985</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38227.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902418.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2985"/>
    <dbReference type="EnsemblBacteria" id="SHH38227">
        <property type="protein sequence ID" value="SHH38227"/>
        <property type="gene ID" value="SAMN05444003_2985"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="95"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH38227.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="123" mass="14054" checksum="AD61500594098966" modified="2017-03-15" version="1">MAEPSIQDKVAYISLLIEERLRFKDGTLDRQLYKAGPKLPRRVRKAGKKVLDASNLVGHPKLARMIDQREFDKSAAIVIEHLEKIDPRDEAFGRLLVFLGKVSFVLIATFIAVVWYMWAQGMV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SIT0</accession>
    <name>A0A1M5SIT0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 11">Cytidine deaminase</fullName>
            <ecNumber evidence="6 11">3.5.4.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10 11">Cytidine aminohydrolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">SAMN05444003_2993</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 11">This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 11">
            <text>2'-deoxycytidine + H(+) + H2O = 2'-deoxyuridine + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:13433"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15698"/>
            <dbReference type="ChEBI" id="CHEBI:16450"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="EC" id="3.5.4.5"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>cytidine + H(+) + H2O = NH4(+) + uridine</text>
            <dbReference type="Rhea" id="RHEA:16069"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16704"/>
            <dbReference type="ChEBI" id="CHEBI:17562"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="EC" id="3.5.4.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3 11">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="5 11">Belongs to the cytidine and deoxycytidylate deaminase family.</text>
    </comment>
    <dbReference type="EC" id="3.5.4.5" evidence="6 11"/>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38399.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902429.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2993"/>
    <dbReference type="EnsemblBacteria" id="SHH38399">
        <property type="protein sequence ID" value="SHH38399"/>
        <property type="gene ID" value="SAMN05444003_2993"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004126">
        <property type="term" value="F:cytidine deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047844">
        <property type="term" value="F:deoxycytidine deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016192">
        <property type="entry name" value="APOBEC/CMP_deaminase_Zn-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002125">
        <property type="entry name" value="CMP_dCMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006262">
        <property type="entry name" value="Cyt_deam_tetra"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016193">
        <property type="entry name" value="Cytidine_deaminase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00383">
        <property type="entry name" value="dCMP_cyt_deam_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53927">
        <property type="entry name" value="SSF53927"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01354">
        <property type="entry name" value="cyt_deam_tetra"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00903">
        <property type="entry name" value="CYT_DCMP_DEAMINASES_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51747">
        <property type="entry name" value="CYT_DCMP_DEAMINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 11" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="CMP/dCMP-type deaminase" evidence="12">
        <location>
            <begin position="1"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000393"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00000631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00003949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00006576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012783"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00018266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00032005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU364006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHH38399.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="130" mass="13212" checksum="618EFE6CD0B1975C" modified="2017-03-15" version="1">MTLMDDARAVRENAHAPYSNFKVGAAVQTSSGAVYKGCNVENVAYPEGTCAEAGAIAAMVAAGERDVVAVAVIADSPQPVSPCGGCRQKLAEFAGADAKVTLGTLDGTVLETTVGALLPGAFDKDYMSKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SKA0</accession>
    <name>A0A1M5SKA0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Fe2OG dioxygenase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2990</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the iron/ascorbate-dependent oxidoreductase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38333.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2990"/>
    <dbReference type="EnsemblBacteria" id="SHH38333">
        <property type="protein sequence ID" value="SHH38333"/>
        <property type="gene ID" value="SAMN05444003_2990"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005123">
        <property type="entry name" value="Oxoglu/Fe-dep_dioxygenase"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51471">
        <property type="entry name" value="FE2OG_OXY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0408">Iron</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fe2OG dioxygenase" evidence="2">
        <location>
            <begin position="131"/>
            <end position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU003682"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH38333.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="259" mass="28597" checksum="9709B6DF2EAC97E8" modified="2017-03-15" version="1">MQLSDIVNLKAHPLTDQSFIATCAEQLDREGVLVLPNLIRTEALIAMQAEAEAGQDKAYFCAQNHSIYLTPHNPDFPDSHAANRQVVSSKGCICDDIIATDSPLRALYDDADFRSFIKGTVGQPELHPYADTLSSINIHYAKRGQELGWHFDNSSFAITLLIQKPDAGSAFEYIKNLRDADAGEMNYEGVTALLDGRTTPDVLSMNAGDLVLFRGRNSIHRVSPNESDRTRMLAVLAYNSEPGIELSESARMTFYGRLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SSQ8</accession>
    <name>A0A1M5SSQ8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Alginate O-acetyltransferase complex protein AlgI</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_3084</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the membrane-bound acyltransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41545.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902622.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3084"/>
    <dbReference type="EnsemblBacteria" id="SHH41545">
        <property type="protein sequence ID" value="SHH41545"/>
        <property type="gene ID" value="SAMN05444003_3084"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042121">
        <property type="term" value="P:alginic acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024194">
        <property type="entry name" value="Ac/AlaTfrase_AlgI/DltB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028362">
        <property type="entry name" value="AlgI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004299">
        <property type="entry name" value="MBOAT_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03062">
        <property type="entry name" value="MBOAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF500217">
        <property type="entry name" value="AlgI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF016636">
        <property type="entry name" value="AlgI_DltB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="3 9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9 11" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="7"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="47"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="80"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="119"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="149"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="242"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="310"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="353"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="409"/>
            <end position="425"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="437"/>
            <end position="456"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRNR" id="PIRNR016636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH41545.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="465" mass="51992" checksum="4EF167CCE271363C" modified="2017-03-15" version="1">MVFSSLIFIFGFLPAFLAVYYVVPARFRSAWILIGSYAFYGWWRLEYLAVVVGISLVSFICANAALAAKSKKRKSLWVKLGVGTDLAVLGYFKYTYFIAESIDAALISFDGASLGVEKIVLPIGISFLTFQSISYILDVSRKDAPPARTVMDFLAFSALFPQLIAGPVLRYKDVADQFQSRTHSLLVFQSGCKRFVQGLAMKLLIADTVAPLADRMFALDAPTMAEAWLGAGAYSIQLLFDFAGYSAMAIGLGLMIGFRFVENFNAPYISQSVTEFWRRWHISLSNWLRDYLYIPLGGNRGGTLKTFRNLMLTMVLGGFWHGANWTFIIWGAWHGLLLSLERAIGSKSRKRVWPRYTGWPFTMVAVIVGWVMFRAATVTDAFEMYRGMVGLNGINISAETIYFNQPIEFVGLIVGAILSIAPSINPRVSVPQYLMSLQLFTPLMFVGCTIVLSARAHSPFLYFQF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5ST68</accession>
    <name>A0A1M5ST68_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Carbohydrate ABC transporter ATP-binding protein, CUT1 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_3089</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41637.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902632.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3089"/>
    <dbReference type="EnsemblBacteria" id="SHH41637">
        <property type="protein sequence ID" value="SHH41637"/>
        <property type="gene ID" value="SAMN05444003_3089"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="6">
        <location>
            <begin position="4"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="36"/>
            <end position="43"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH41637.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="331" mass="35587" checksum="2D816E0A5A4DDBBC" modified="2017-03-15" version="1">MADVTLSGVSKTFGADTALSDVSMTVPDGSFVVLLGPTGAGKTTTLRMVSGLDKPDSGTVKIGDRDMAGLTPAQRDVAMVFQQYSLYPHLTVRQNLEFPLKSPILKTPQAAIDVKVGEVAEILQISHKLDNKATALSGGEMQRVSIGRALVRNPAVYLMDEPLSSLDAKLRSDLRIELKNIQANSGATLLYVTHDQIEAMTMATHVGVLDNGKLVQFGTPREIYENPVSVYAASRLGQPRINVLPAESFGGAPNGAVNIGLRPEQIIQGEGEDSTVSRVERLGDQTRLHLIFKGHDIVTVTDAHTRLTGGDIVKIRPRNPHYFDADGARVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SVD2</accession>
    <name>A0A1M5SVD2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3140</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42502.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902706.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3140"/>
    <dbReference type="EnsemblBacteria" id="SHH42502">
        <property type="protein sequence ID" value="SHH42502"/>
        <property type="gene ID" value="SAMN05444003_3140"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH42502.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="203" mass="22073" checksum="D4E8EC1470158679" modified="2017-03-15" version="1">MTEDDLARALAPHHLTSLGHCPMEGGTLCLIGPDEPTFWPAFKQSPEYQDGDTNPMDRWSLRVLTEVAQDLGAKPFFPFQGPPYRPFQTWALQTGRFANSAIGFLAHDERGLFASFRGALWLPALWPLAPNTAPALSATAMCAAACPVDALADGYDVAACKTHVASPQGQDCRKGGCLSRRACAIGRDRRLPEQSAFHMKAFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SVQ6</accession>
    <name>A0A1M5SVQ6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">L-glutamine ABC transporter ATP-binding protein /L-glutamate ABC transporter ATP-binding protein /L-aspartate ABC transporter ATP-binding protein /L-asparagine ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_3144</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902712.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3144"/>
    <dbReference type="EnsemblBacteria" id="SHH42569">
        <property type="protein sequence ID" value="SHH42569"/>
        <property type="gene ID" value="SAMN05444003_3144"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015424">
        <property type="term" value="F:ABC-type amino acid transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030679">
        <property type="entry name" value="ABC_ATPase_HisP-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF039085">
        <property type="entry name" value="ABC_ATPase_HisP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="14"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="46"/>
            <end position="53"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH42569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="254" mass="28893" checksum="BFCBBA79586E4FC9" modified="2017-03-15" version="1">MAQTQMKVSDEVAIQINQMNKWYGTFHVLRDVNLTVNRGERIVICGPSGSGKSTLIRCINRLEEHQAGDIIVDGTELSSDLKNIDKIRSEVGMCFQHFNLFPHLTILENCTLAPIWVRKTPKKEAEETAMHFLEKVKIPDQAMKYPGQLSGGQQQRVAIARSLCMKPRIMLFDEPTSALDPEMIKEVLDTMIELAEEGMTMLCVTHEMGFARQVANRVIFMDQGQIVEQNEPEEFFNNPQSERTQLFLSQIIGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SVZ9</accession>
    <name>A0A1M5SVZ9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Replication-associated recombination protein A</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_3151</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">DNA-dependent ATPase that plays important roles in cellular responses to stalled DNA replication processes.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42684.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902725.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3151"/>
    <dbReference type="EnsemblBacteria" id="SHH42684">
        <property type="protein sequence ID" value="SHH42684"/>
        <property type="gene ID" value="SAMN05444003_3151"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009378">
        <property type="term" value="F:four-way junction helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009432">
        <property type="term" value="P:SOS response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032423">
        <property type="entry name" value="AAA_assoc_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008921">
        <property type="entry name" value="DNA_pol3_clamp-load_cplx_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021886">
        <property type="entry name" value="MgsA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008824">
        <property type="entry name" value="RuvB-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16193">
        <property type="entry name" value="AAA_assoc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12002">
        <property type="entry name" value="MgsA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05496">
        <property type="entry name" value="RuvB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48019">
        <property type="entry name" value="SSF48019"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0227">DNA damage</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0742">SOS response</keyword>
    <feature type="domain" description="AAA" evidence="6">
        <location>
            <begin position="51"/>
            <end position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002393"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00020776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH42684.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="437" mass="48080" checksum="FD8979A780F82F2C" modified="2017-03-15" version="1">MADLFSQETSIAPQAGPLADRLRPSNLAEVIGQEQVIGPEAPLGAMLAAGSLSSLILWGPPGVGKTTIARLLANETNLHFVQISAIFTGVPDLRKVFEAAKIRRQNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAAVLSRAQVLVLERLSLADLERLAQRAEKELDRKLPLDGPAREALLEMADGDGRALLNLIEQVTAWKDDTVLKVDALSSRLMKRAAVYDKSGEEHYNLISALHKSVRGSDPDAALYWFARMLEGGEDPRYLARRITRMAVEDIGLADPQAQTVCLQAWETYERLGSPEGELAISQALVYLALAPKSNANYVAYKAARKAAKSTGSQPPPKHILNAPTSLMKDQGYGDGYAYDHDAEDGFSGQNYFPDGMKRGVYYLPVDRGFERDLKKRVEYFAKLRAKRQSSEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SXI9</accession>
    <name>A0A1M5SXI9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">30S ribosomal protein S17</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rpsQ</name>
        <name evidence="4" type="ORF">SAMN05444003_3175</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Part of the 30S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the universal ribosomal protein uS17 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH43165.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902765.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3175"/>
    <dbReference type="EnsemblBacteria" id="SHH43165">
        <property type="protein sequence ID" value="SHH43165"/>
        <property type="gene ID" value="SAMN05444003_3175"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01345_B">
        <property type="entry name" value="Ribosomal_S17_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019984">
        <property type="entry name" value="Ribosomal_S17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000266">
        <property type="entry name" value="Ribosomal_S17/S11"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10744">
        <property type="entry name" value="PTHR10744"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00366">
        <property type="entry name" value="Ribosomal_S17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00973">
        <property type="entry name" value="RIBOSOMALS17"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03635">
        <property type="entry name" value="uS17_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 4" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 3" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH43165.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="76" mass="8688" checksum="2D4374FB525E87F0" modified="2017-03-15" version="1">MPKRILAGVVTSNQNAQTVTVLVERRFKHPLLAKTVRKSKKYRAHDENNAFNVGDKVRIQECAPKSKTKRWEVIAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SY02</accession>
    <name>A0A1M5SY02_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3184</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH43346.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH43346">
        <property type="protein sequence ID" value="SHH43346"/>
        <property type="gene ID" value="SAMN05444003_3184"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH43346.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="44" mass="4981" checksum="DCF19571D31F364B" modified="2017-03-15" version="1">MSFKRTVPADPEVWRIHNGKLYMFARPVGGTKFDESPEAMIAKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T3M4</accession>
    <name>A0A1M5T3M4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, AraC family with amidase-like domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3220</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45308.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902868.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH45308">
        <property type="protein sequence ID" value="SHH45308"/>
        <property type="gene ID" value="SAMN05444003_3220"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002818">
        <property type="entry name" value="DJ-1/PfpI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01965">
        <property type="entry name" value="DJ-1_PfpI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="1">
        <location>
            <begin position="215"/>
            <end position="313"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH45308.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="317" mass="34770" checksum="A22D3A9F32CE1A96" modified="2017-03-15" version="1">MQKSKKLKGQMQQLNILLYDGFSNLCLANFLEPFRAANTLSRSPVYGWQCLSLDGTAVFSSSKLSVTPDAAFADQTGDVLAVMPSYGFREADNDMLRRKLRAAAGRHRVVAGLDTGSWLLASAGLLEGARATIHWEELTQFEEAFPQVTAVRERFVVDGDQLTCSGALAAFDLAQSLIADEHGPVLALEVGEFLMSDRRSGEMLPPMRSGSLLVNRAWKVMQANLEVPLSIGAIAKSLGCSQKTLETRMRADLGTTPDALYRRLRLNYARKLVVETEQSVAEIAGRCGYENASAMTRAFKQTFGQAPRDLRVENVLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T409</accession>
    <name>A0A1M5T409_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Glycine betaine/proline transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_3227</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45464.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3227"/>
    <dbReference type="EnsemblBacteria" id="SHH45464">
        <property type="protein sequence ID" value="SHH45464"/>
        <property type="gene ID" value="SAMN05444003_3227"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="112"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="141"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="164"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="199"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="226"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="289"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="320"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="161"/>
            <end position="341"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH45464.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="355" mass="37852" checksum="3A5B04D6C860E11E" modified="2017-03-15" version="1">MAGGGLADFKGTGMAFYDGLFEALGLEDWCGGDASSAPLSMADLLAQNSGDEATGPIFPFPSLDNLNESCAAVSQTRDLTKGIEDSFLAAKPALQTVLDPVTQPLSWLLDGALWTFNAIPWWIMIPLLVVVSWYASRSKGVTIFVAVSILLMAFVDHYDVAMQTLSIIFVCTSISVLIGVPVGIAMSKSDRLQRAIVPVLDLLQTLPTFVYLIPLIFLFSVTESKLYGIAIILYAIVPVIRLTDLGIRLVDQDVVEAANAFGMTSRQKLTGVELPLALPNIMAGVNQTIMMSLAMVVIASLVSAPGLGVNVLRGIRNLELGVGIVAGIGIVLLAVILDRVSKAALSRVDMTNMKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T446</accession>
    <name>A0A1M5T446_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_3223</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45380.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902873.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3223"/>
    <dbReference type="EnsemblBacteria" id="SHH45380">
        <property type="protein sequence ID" value="SHH45380"/>
        <property type="gene ID" value="SAMN05444003_3223"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016160">
        <property type="entry name" value="Ald_DH_CS_CYS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00070">
        <property type="entry name" value="ALDEHYDE_DEHYDR_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="5">
        <location>
            <begin position="33"/>
            <end position="476"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="267"/>
        </location>
    </feature>
    <feature type="active site" evidence="3">
        <location>
            <position position="302"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH45380.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="490" mass="52609" checksum="7E4E170B121E30CD" modified="2017-03-15" version="1">MSDLLTHGEYKALAEALDPPTTAFIDGKFKAGSGAKFPTVNPATGEGLAEISGCDTSDVDLAVAKAREAFEQGRWSKLHPSDRKDVLIRLCKLITRNRRELAVMESVDSGKPILDCEAVDVPETIHCIKWHAEAIDKIYDQTGPTGDDAISMIVREPIGVVAAVLPWNFPLMMLAWKIGPALAVGCSVIVKPAEQTSLTALRVAELAYEAGVPRGVLQVLPGDGPSVGEPLGRHMDVDMVSFTGSTDTGRLFLKYSAESNLKKVVLECGGKNPAVVFDDAENLDNVAEHVVNAAFWNAGQNCSAASRLIVHKDVKAGLLERIEARMRDWKTGDPLDPANHIGCLIDGDHAAKVCGYIGETEKNVFVTPCVVEVDRDDVKARDEIFGPVLSVITVASNDEAVEVANDTSYGLAASVFTANTRWAIRAARDIKAGTVTVNCYGEGDISTPFGGYKQSGFGGRDNGVHAHDQFTELKTIWIDLTDPKEGDHVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T6B9</accession>
    <name>A0A1M5T6B9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3261</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46252.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902932.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3261"/>
    <dbReference type="EnsemblBacteria" id="SHH46252">
        <property type="protein sequence ID" value="SHH46252"/>
        <property type="gene ID" value="SAMN05444003_3261"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH46252.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="560" mass="63460" checksum="32A3E348313E4950" modified="2017-03-15" version="1">MNDLSPLIPRRDPNVVMRLSRLGSLHQTRLSFMRILMRRMASEDWTFSRPEFDIDEIGVGYAVYSAKTPNRSYSLVAFAHDLPPEDRSDRVIANAWDATFTLFDGVPTRDDIQRLSENVPVQEAGRITEKELTMSRANRSVRLWEHVVEQLSNGQQPDLEQIQQVGYLMRTTAVYGSGKFGAADRESIEDRSEFKAPFQVEMLTVYLIRTFVKDLVEHMARAKGGNAAAPLSSDIAKQLGIGNSTGLGMAPFLINHPILFSNWIMVREEAISRVRSVAQASKEEIALFLSLFDRCRHSIDQWTSEHPIQKERLSKLKSDIASIVTRLDAQDFDVAYPWDSILKWAAETLSEEGQEFLNSLVLEPYAQLVDGLSSCMSDHFERSFHIDGAIPVENVRQLITDTFGWALSVDWTAQPENARAWYVSEEKLEPRLGERFEEPIAKYEQPLAPARDAAAAFGALKPYAKDAPISAFLADHPHFRHTIRRAQMSALAPYSEIRDNTISAELLPIDMLRAKLSFFGAIHFDPRSDRWVRICMFSGAPYPADLTVENADFWIYPEVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5KZ33</accession>
    <name>A0A1M5KZ33_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Phospholipase D</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Choline phosphatase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_0007</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Could be a virulence factor.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Secreted</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58058.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898324.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0007"/>
    <dbReference type="EnsemblBacteria" id="SHG58058">
        <property type="protein sequence ID" value="SHG58058"/>
        <property type="gene ID" value="SAMN05444003_0007"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019637">
        <property type="term" value="P:organophosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025202">
        <property type="entry name" value="PLD-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001736">
        <property type="entry name" value="PLipase_D/transphosphatidylase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13091">
        <property type="entry name" value="PLDc_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00155">
        <property type="entry name" value="PLDc"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50035">
        <property type="entry name" value="PLD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0964">Secreted</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="7"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="domain" description="PLD phosphodiesterase" evidence="7">
        <location>
            <begin position="169"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="domain" description="PLD phosphodiesterase" evidence="7">
        <location>
            <begin position="408"/>
            <end position="435"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00018392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00029594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG58058.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="518" mass="57523" checksum="AB66321A76E7FEE2" modified="2017-03-15" version="1">MLKFLKNLLIIIILFVGASFIFQVIFPVPSNEGRENSTYIAASTDTQMGELILGMAEENPGTSGVLPLLGGPSAFAARVAMARAAEQSIDARYYIWQRDITGILLLDELKKAADRGVRVRFLLDDNGIPDLDPEFAELDAHPNIEVRVFNPFVLRSPRVLTYIFDFLRINRRMHNKSMTFDGVATIVGGRNIGDIYFDRNEEVNYFDFDVAVIGDGARDVDEDFDLYWASESAVPFSELSDPDDPATDTLAATYAEIENDPATDTYLQAIEESLIIPNLNNNAEVFEWVEVALVSDDPAKALGAMDPSGYMAVRLYEILPTPQSEIDLISAYFIPGDFLTDRLTGWAQDGLLVRTLTNAQEATDVLPVHGGYIGYREALVEGGVKVFELKTAQELRSLTEQFGLTGESRSSLHAKTFIIDREHIFVGSYNFDPRSARLNTEMGFLVASPSISTLVVEGLDENIANRAYEVVFAENGDLEWIDAGAEGGPKVWDTEPNTTWFSRFLASFIGILPIEWML</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L4F9</accession>
    <name>A0A1M5L4F9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Glycoside/pentoside/hexuronide:cation symporter, GPH family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_0066</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the sodium:galactoside symporter (TC 2.A.2) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59303.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900325.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0066"/>
    <dbReference type="EnsemblBacteria" id="SHG59303">
        <property type="protein sequence ID" value="SHG59303"/>
        <property type="gene ID" value="SAMN05444003_0066"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015293">
        <property type="term" value="F:symporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008643">
        <property type="term" value="P:carbohydrate transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039672">
        <property type="entry name" value="MFS_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11328">
        <property type="entry name" value="PTHR11328"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="39"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="79"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="107"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="147"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="173"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="222"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="264"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="297"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="320"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="377"/>
            <end position="396"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="416"/>
            <end position="437"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="7">
        <location>
            <begin position="1"/>
            <end position="440"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG59303.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="445" mass="46614" checksum="A687443D57DBC485" modified="2017-03-15" version="1">MALSLGQKAGWGLADMGIVVFVIVKQLLILTFLTAFLGVPVGIAGFVTTAVLVFDMVTDPLVGYLSDRTESRWGRRAPWMFWGALVMAAGTVGMFAVPSGFSSTGNLLWVIAFFLVATVGFTMVAIPYSAQAGEITDDPKERSSMTGFRMAFASVGILIGGALIPGLAGSFGYAMATLMVTPLMVGAIWISIFATRNAPRGEAPEEVSLGKAFGLVASNKPFMVLVVLYGVMTLAVALITAGLPFGAIYLILDNGETALSGAAQALSVLSLMFAAFVVGAILSQAVWVLLSHRIGKVGALSIGLALYMVLLYVLNMALPSVNVTAIAGLFVIAGFTNGAYQQIPWAIFPDLMDITRKESGIALEGAFSAIWLFGQKLANALAPAVLGLILASAGWQETTEGAVDQSVEALATLQDSITLIPASILGVALLALIFIYLPMQRRALG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L4V0</accession>
    <name>A0A1M5L4V0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Ribose-5-phosphate isomerase A</fullName>
            <ecNumber evidence="2">5.3.1.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Phosphoriboisomerase A</fullName>
            <shortName evidence="2">PRI</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">rpiA</name>
        <name evidence="3" type="ORF">SAMN05444003_0100</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>aldehydo-D-ribose 5-phosphate = D-ribulose 5-phosphate</text>
            <dbReference type="Rhea" id="RHEA:14657"/>
            <dbReference type="ChEBI" id="CHEBI:58121"/>
            <dbReference type="ChEBI" id="CHEBI:58273"/>
            <dbReference type="EC" id="5.3.1.6"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Carbohydrate degradation; pentose phosphate pathway; D-ribose 5-phosphate from D-ribulose 5-phosphate (non-oxidative stage): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ribose 5-phosphate isomerase family.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.6" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59965.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898453.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0100"/>
    <dbReference type="EnsemblBacteria" id="SHG59965">
        <property type="protein sequence ID" value="SHG59965"/>
        <property type="gene ID" value="SAMN05444003_0100"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00115">
        <property type="reaction ID" value="UER00412"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004751">
        <property type="term" value="F:ribose-5-phosphate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009052">
        <property type="term" value="P:pentose-phosphate shunt, non-oxidative branch"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01398">
        <property type="entry name" value="RPI_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00170">
        <property type="entry name" value="Rib_5P_isom_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037171">
        <property type="entry name" value="NagB/RpiA_transferase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020672">
        <property type="entry name" value="Ribose5P_isomerase_typA_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004788">
        <property type="entry name" value="Ribose5P_isomerase_type_A"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06026">
        <property type="entry name" value="Rib_5-P_isom_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100950">
        <property type="entry name" value="SSF100950"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00021">
        <property type="entry name" value="rpiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2 3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="2">
        <location>
            <begin position="33"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="2">
        <location>
            <begin position="89"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="2">
        <location>
            <begin position="102"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="111"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="129"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG59965.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="262" mass="28142" checksum="314C33A2E6F6DCDE" modified="2017-03-15" version="1">MSSDLSPIDRAKFVAAKRAASYVHSGMKVGLGTGSTAAWLVRCLGEMVRDEGLRIQGVPTSTRTAQLARDVGIEVISLDEAKWLDLTIDGADEYDVDLNLIKGGGGALLQEKIVATASDQMMVIADISKQVGMLGAFPLPIEVIPFGWQTTKTLVEETLISLDVLGTSSTLRMNGDTPFVTDEGNHILDLHLNRIGNARQLSLVLNQIPGVVENGLFIDICDVLVIGSADGKVEVRDINKGSTEEIQFDFLDDGNIFIEAAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L8B4</accession>
    <name>A0A1M5L8B4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Threonine/homoserine/homoserine lactone efflux protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_0157</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61200.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898518.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG61200">
        <property type="protein sequence ID" value="SHG61200"/>
        <property type="gene ID" value="SAMN05444003_0157"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001123">
        <property type="entry name" value="LeuE-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30086">
        <property type="entry name" value="PTHR30086"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01810">
        <property type="entry name" value="LysE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="44"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="73"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="138"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="175"/>
            <end position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG61200.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="198" mass="21740" checksum="9E708C3239C7F367" modified="2017-03-15" version="1">MTYELLIALVGFAFVSSVTPGPNNLMLMASGANFGFRRTLPHMLGISIGHSFQVTMVGLGLGQLFVTYPLAQTILRVLSTAYLIYLAWKIATAAPPSDGEAKGKPFTFLQAAAFQWVNPKAWYMAIFAITNYAQGEGIFWPALLVAIVFACTNFPSIMLWTTIGTQVKRLLTRPALLRAFNWTMAALLVLTLIPVWFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L8F8</accession>
    <name>A0A1M5L8F8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0161</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61298.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898524.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0161"/>
    <dbReference type="EnsemblBacteria" id="SHG61298">
        <property type="protein sequence ID" value="SHG61298"/>
        <property type="gene ID" value="SAMN05444003_0161"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009506">
        <property type="entry name" value="DUF1127"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06568">
        <property type="entry name" value="DUF1127"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG61298.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="71" mass="7936" checksum="BACD04383217B135" modified="2017-03-15" version="1">MAYVSTTRATSVTFGQRFNEFRARMAEASAQRKTYNTTMSELSALSNRELADLGLHRSMIKQVALEAAYGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L8H7</accession>
    <name>A0A1M5L8H7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Hippurate hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0160</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61276.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898522.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0160"/>
    <dbReference type="EnsemblBacteria" id="SHG61276">
        <property type="protein sequence ID" value="SHG61276"/>
        <property type="gene ID" value="SAMN05444003_0160"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017439">
        <property type="entry name" value="Amidohydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036264">
        <property type="entry name" value="Bact_exopeptidase_dim_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002933">
        <property type="entry name" value="Peptidase_M20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011650">
        <property type="entry name" value="Peptidase_M20_dimer"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11014">
        <property type="entry name" value="PTHR11014"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07687">
        <property type="entry name" value="M20_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01546">
        <property type="entry name" value="Peptidase_M20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005962">
        <property type="entry name" value="Pept_M20D_amidohydro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55031">
        <property type="entry name" value="SSF55031"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01891">
        <property type="entry name" value="amidohydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="M20_dimer" evidence="2">
        <location>
            <begin position="182"/>
            <end position="277"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG61276.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="385" mass="41196" checksum="D2ACB6F4ABDAD6E7" modified="2017-03-15" version="1">MEPTDLAEKLRQWRRHLHAHPEFGFEEKQTAAFVVERLKEFGIEDIQTGIGGTGVVATLKRGHGGRTIALRADMDCLKIHETTNLPYASKTSGLMHACGHDGHTVALLGAAALLAASEDFDGTVRFIFQPAEEWGQGMKAMIRDGLGTNLSFDEIYGLHNKPGLPVGSFETKVGPYMGAEDGFRIVVNGRGGHASRPQDSQDAIACACSIVGELQTIVSRAIDPADLAVVSVTSIAGDNVKNAIASEAVIEGDCRHFDDRVSQSIEATMRRIAKGVAAAHGCTAQVTYDRVFIPLVNDAAAVAHGLKAAEQVYGAEHTSAEAPRMGASEDFAQALSLAPGAFFNFGNGDSAALHNPEYDFNDEALMPAARWYVQLVKNRLPRADA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LDE6</accession>
    <name>A0A1M5LDE6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0228</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62980.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0228"/>
    <dbReference type="EnsemblBacteria" id="SHG62980">
        <property type="protein sequence ID" value="SHG62980"/>
        <property type="gene ID" value="SAMN05444003_0228"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="24"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="55"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG62980.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="90" mass="10348" checksum="BF26BFC81B37A983" modified="2017-03-15" version="1">MTDKRTQSLFLERKGYRQRRFRDVARMLPILGGILWTIPLMWRQQGEEAVSNATALLYIFGVWVFVIFCTALVSRLIEPGSDLIEKEGGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LDG3</accession>
    <name>A0A1M5LDG3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glyoxylase, beta-lactamase superfamily II</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0233</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63101.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898645.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0233"/>
    <dbReference type="EnsemblBacteria" id="SHG63101">
        <property type="protein sequence ID" value="SHG63101"/>
        <property type="gene ID" value="SAMN05444003_0233"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016788">
        <property type="term" value="F:hydrolase activity, acting on ester bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050313">
        <property type="term" value="F:sulfur dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006749">
        <property type="term" value="P:glutathione metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07724">
        <property type="entry name" value="POD-like_MBL-fold"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044528">
        <property type="entry name" value="POD-like_MBL-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lactamase_B" evidence="1">
        <location>
            <begin position="14"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG63101.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="287" mass="31690" checksum="2D59EC3C2A48D215" modified="2017-03-15" version="1">MSPEIKAFFDEATNTVSYVAKDPEGASCAVIDSVLDYDQAAGRTSTESADQIIHYIQEYELSLAWILESHVHADHLSAAPYLQEKLGGKIGIGDQITVIQDTFGKIFNEGTQFQRDGSQFDALFSEGDSVHVGQLRVDVLHTPGHTPACLTYVIGDAAFVGDTLFMPDFGTARCDFPGGSAEDLYQSIQKILSLPDETRIFVGHDYKAPGRDEFAWETTVGEQKALNVHIGEGRPMEDFVSMRTERDAKLGMPRLILPSLQTNMRAGHMPEPDESGKRYFKVPINEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LEU1</accession>
    <name>A0A1M5LEU1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">NitT/TauT family transport system ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0248</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63460.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898670.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0248"/>
    <dbReference type="EnsemblBacteria" id="SHG63460">
        <property type="protein sequence ID" value="SHG63460"/>
        <property type="gene ID" value="SAMN05444003_0248"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd13553">
        <property type="entry name" value="PBP2_NrtA_CpmA_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044527">
        <property type="entry name" value="NrtA/CpmA_ABC-bd_dom"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG63460.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="377" mass="41378" checksum="3BCB61709A3EC35D" modified="2017-03-15" version="1">MTRTILNCGYVALVDSAPLIIAKELQFALEEGVELNLVRQPSWSALRDMLALGHLDAAQMLSPMPIAMTLGIGSLSAEIDALMVLSANGTAFGVSNKVAAEIGPIPFGHPHTIKRAIAARDADPLRIGLPFHHSMHRLLLSYWISTEPAVEIERIIIPPPRMADAIAEDRIDAFWVGEPWGTVAVERGIAQLLMTGRDVWQFSPEKVLAARRNWILENDADARSLTRAVYRAAQWLDAPENKPLAIEILSRSDHLDLPTELIDPGLTGQLTAVKGAAPIEIDRFLQFHRFAANFPWRSQAAWIADQLGGSKEDVNRAKSSFRSDLYRNNLEGIGVDLPTASEKVEGSLSEETGVASTKGRMILAPDAFFDGRTFDFT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LFS2</accession>
    <name>A0A1M5LFS2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0264</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63800.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0264"/>
    <dbReference type="EnsemblBacteria" id="SHG63800">
        <property type="protein sequence ID" value="SHG63800"/>
        <property type="gene ID" value="SAMN05444003_0264"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016646">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002563">
        <property type="entry name" value="Flavin_Rdtase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01613">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00903">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavin_Reduct" evidence="1">
        <location>
            <begin position="22"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG63800.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="167" mass="17635" checksum="58F8EFD3B0FF28B0" modified="2017-03-15" version="1">MDAGTIASFDPSTDAGSFRGALGTFVTGVTLVTTDSPEGPIGIVANSFASVSLDPPLVLWSPAKASKRFEHFAGSRRFAIHVLSADQRDVCAAFAKSKTAFDSVTWTKSHCGMPLIYGALATFECNLHATHDAGDHVIIVGEVTRCTHSTGTPLVFHGGKYGEFNET</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LGR9</accession>
    <name>A0A1M5LGR9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6">DNA repair protein RadA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">radA</name>
        <name evidence="8" type="ORF">SAMN05444003_0285</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.</text>
    </comment>
    <comment type="function">
        <text evidence="5">Plays a role in repairing double-strand DNA breaks, probably involving stabilizing or processing branched DNA or blocked replication forks.</text>
    </comment>
    <comment type="domain">
        <text evidence="5">The middle region has homology to RecA with ATPase motifs including the RadA KNRFG motif, while the C-terminus is homologous to Lon protease.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 6">Belongs to the RecA family. RadA subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64334.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898714.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0285"/>
    <dbReference type="EnsemblBacteria" id="SHG64334">
        <property type="protein sequence ID" value="SHG64334"/>
        <property type="gene ID" value="SAMN05444003_0285"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140664">
        <property type="term" value="F:ATP-dependent DNA damage sensor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003684">
        <property type="term" value="F:damaged DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000725">
        <property type="term" value="P:recombinational repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01121">
        <property type="entry name" value="Sms"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01498">
        <property type="entry name" value="RadA_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004504">
        <property type="entry name" value="DNA_repair_RadA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020588">
        <property type="entry name" value="RecA_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041166">
        <property type="entry name" value="Rubredoxin_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18073">
        <property type="entry name" value="Rubredoxin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00416">
        <property type="entry name" value="sms"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50162">
        <property type="entry name" value="RECA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 6" id="KW-0227">DNA damage</keyword>
    <keyword evidence="5 6" id="KW-0234">DNA repair</keyword>
    <keyword evidence="5 6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 5 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0346">Stress response</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <keyword evidence="2 6" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="RECA_2" evidence="7">
        <location>
            <begin position="66"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="region of interest" description="Lon-protease-like" evidence="5">
        <location>
            <begin position="351"/>
            <end position="454"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="RadA KNRFG motif" evidence="5">
        <location>
            <begin position="252"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="95"/>
            <end position="102"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01498"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50162"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG64334.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="454" mass="48197" checksum="E3FA0FFE27993915" modified="2017-03-15" version="1">MAKNISYSCSACGAVTTKWSGRCESCGEWNTIHEDKAISSGPKKKTLGGHRGKTINLTDLATEEKEPPRTHAGVGELDRVLGGGLVKASALLVGGDPGIGKSTLLLQAAARFARNGLKVIYISGEESSAQVQMRARRLGLTESPVQLASETNLRDILTTLETEKPDLAIIDSIQTMWADNVESAPGSVSQVRASAHELTNFAKRHGIAVIMVGHVTKEGAIAGPRVVEHMVDTVLYFEGERGHQFRILRAVKNRFGPADEIGVFEMTGKGLAEVKNPSALFLSDRGDPAPGSVVFAGIEGSRPMLCEIQALVAPSPHSQPRRSVVGWDGGRLAMILAVLESRCGVPFAGLDVYLNVAGGLRISEPAADLAIAASLISAREDAALPKDTVIFGEISLSGALRPVAQTENRLKEAEKLGFTSAISSHSHKKHATSGINLRQMTDLAGFVEEVFGAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LIN3</accession>
    <name>A0A1M5LIN3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, AsnC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0311</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64865.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898757.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0311"/>
    <dbReference type="EnsemblBacteria" id="SHG64865">
        <property type="protein sequence ID" value="SHG64865"/>
        <property type="gene ID" value="SAMN05444003_0311"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000485">
        <property type="entry name" value="AsnC-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019888">
        <property type="entry name" value="Tscrpt_reg_AsnC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019887">
        <property type="entry name" value="Tscrpt_reg_AsnC/Lrp_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01037">
        <property type="entry name" value="AsnC_trans_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13404">
        <property type="entry name" value="HTH_AsnC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00033">
        <property type="entry name" value="HTHASNC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00344">
        <property type="entry name" value="HTH_ASNC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50956">
        <property type="entry name" value="HTH_ASNC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH asnC-type" evidence="4">
        <location>
            <begin position="5"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG64865.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="153" mass="17395" checksum="4FB05A0A908B8958" modified="2017-03-15" version="1">MALRIDETDRKILAELQRDAAQSLDEIAKNVGSSKTPVWNRIKKLRDAEIIGQQTVMLDAEALGFEACFFVLIRTSEHEAEWQAKFLKALRDRPEVQEAHRLAGDIDYILKVRVANARAYDDFYQALISEVRVHNVTALLSMEEIKSTVALPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LJ59</accession>
    <name>A0A1M5LJ59_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DNA-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0322</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65077.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0322"/>
    <dbReference type="EnsemblBacteria" id="SHG65077">
        <property type="protein sequence ID" value="SHG65077"/>
        <property type="gene ID" value="SAMN05444003_0322"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030527">
        <property type="term" value="F:structural constituent of chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.520.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000119">
        <property type="entry name" value="Hist_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010992">
        <property type="entry name" value="IHF-like_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00216">
        <property type="entry name" value="Bac_DNA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47729">
        <property type="entry name" value="SSF47729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG65077.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="138" mass="14613" checksum="292D30CF71E6D2DE" modified="2017-03-15" version="1">MTKKVTSPKKPTTGTVNKPSSSVKLTPKKLTVDVSKPTSTKSATVAIAAKPVESKAVLKKGELVDRVVEQTGVKKRDAKTSVEAALEVLADALKSDTDLNLPPMGKVRLVKSKEVGDGAKVLTLKLRTMKSKASTEES</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LM14</accession>
    <name>A0A1M5LM14_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">L-rhamnose isomerase</fullName>
            <ecNumber evidence="3">5.3.1.14</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rhaA</name>
        <name evidence="4" type="ORF">SAMN05444003_0338</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>L-rhamnopyranose = L-rhamnulose</text>
            <dbReference type="Rhea" id="RHEA:23160"/>
            <dbReference type="ChEBI" id="CHEBI:17897"/>
            <dbReference type="ChEBI" id="CHEBI:62346"/>
            <dbReference type="EC" id="5.3.1.14"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="3">Binds 1 Mn(2+) ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3">Carbohydrate degradation; L-rhamnose degradation; glycerone phosphate from L-rhamnose: step 1/3.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the rhamnose isomerase family.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.14" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65383.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898784.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0338"/>
    <dbReference type="EnsemblBacteria" id="SHG65383">
        <property type="protein sequence ID" value="SHG65383"/>
        <property type="gene ID" value="SAMN05444003_0338"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00541">
        <property type="reaction ID" value="UER00601"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008740">
        <property type="term" value="F:L-rhamnose isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030145">
        <property type="term" value="F:manganese ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019301">
        <property type="term" value="P:rhamnose catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00541">
        <property type="entry name" value="RhaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009308">
        <property type="entry name" value="Rhamnose_isomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06134">
        <property type="entry name" value="RhaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01748">
        <property type="entry name" value="rhaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-0464">Manganese</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0684">Rhamnose metabolism</keyword>
    <feature type="binding site" evidence="3">
        <location>
            <position position="256"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="288"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="290"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023308"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00541"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG65383.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="412" mass="46333" checksum="3EBA9A4A7BD6BB8C" modified="2017-03-15" version="1">MTYESAKAVFADWGVDTEAALDRLATITISMHCWQGDDVVGFETRSGTSGGGIQATGNYPGRARTPDELRADLEFAYGQIPCKHRLNLHAIYLDTDESPDRDEIEYHHFASWVDWAKDQGIGLDFNPTFFAHEKADDNLTLSHPNKGIRDFWIEHGRRTREIASKMGEELGSSAVNNIWVPDGYKDIPVDRMAARTRLETSLDAMCESEQDPAHMVDAVESKLFGIGVEACTVGSHEFYMGYAIRKGTLLCLDMGHFHPTENIADKLSAVALSLDEILLHVSRPMRWDSDHVILLNDDIQAMANELVFADLLGRTRIGLDFFDATISRTAAWVVGTRNMQKALLRSLLKPQKELKEAEATLDFTRRLIFTEELKDLPFGAVWKEFCERHKVPYGLALSRSLETYQSSVSERG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LN40</accession>
    <name>A0A1M5LN40_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 8">Citrate synthase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_0369</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>acetyl-CoA + H2O + oxaloacetate = citrate + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:16845"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16452"/>
            <dbReference type="ChEBI" id="CHEBI:16947"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="EC" id="2.3.3.16"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Carbohydrate metabolism; tricarboxylic acid cycle; isocitrate from oxaloacetate: step 1/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 6 9">Belongs to the citrate synthase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898835.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0369"/>
    <dbReference type="EnsemblBacteria" id="SHG66069">
        <property type="protein sequence ID" value="SHG66069"/>
        <property type="gene ID" value="SAMN05444003_0369"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00223">
        <property type="reaction ID" value="UER00717"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004108">
        <property type="term" value="F:citrate (Si)-synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd06114">
        <property type="entry name" value="EcCS_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016142">
        <property type="entry name" value="Citrate_synth-like_lrg_a-sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016143">
        <property type="entry name" value="Citrate_synth-like_sm_a-sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002020">
        <property type="entry name" value="Citrate_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019810">
        <property type="entry name" value="Citrate_synthase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024176">
        <property type="entry name" value="Citrate_synthase_bac-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036969">
        <property type="entry name" value="Citrate_synthase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010953">
        <property type="entry name" value="Citrate_synthase_typ-I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00285">
        <property type="entry name" value="Citrate_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001369">
        <property type="entry name" value="Citrate_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00143">
        <property type="entry name" value="CITRTSNTHASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48256">
        <property type="entry name" value="SSF48256"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01798">
        <property type="entry name" value="cit_synth_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00480">
        <property type="entry name" value="CITRATE_SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6 8" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 8" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="active site" evidence="7">
        <location>
            <position position="308"/>
        </location>
    </feature>
    <feature type="active site" evidence="7">
        <location>
            <position position="366"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000308"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004751"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010566"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR001369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR001369-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003406"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG66069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="431" mass="48163" checksum="EF83DEE00DFC233E" modified="2017-03-15" version="1">MSDATKTATLTIDGQDYELPIYSPTAGPDVLDIRKLYAQAGVFTYDPGFTSTASTDSTITFIDGGKGELLHRGYPIDQLAAKSHYLEVCYLLLYGELPSAAQLEDFESRVTNHTMLHEQMMNFFRGFRRDAHPMAIMVGVVGAMSAFYHDSTDPSDPWQREVASIRLIAKMPTIAAMAYKYHIGQPFVYPRNDLDYASNFLRMCFSVPAEDYEVDPILARAMDRIFTLHADHEQNASTSTVRLASSSGANPFACIAAGIACLWGPAHGGANQACLEMLREIGTVDRIPEFIARAKDKEDPFRLMGFGHRVYKNFDPRATVMKESADEVLDLLGVENNPTLQVAKELEKAALADPYFAEKKLFPNVDFYSGIILEAMGFPTSMFTPIFALSRTVGWISQWKEQLSDPALKIGRPRQLYMGETSRDYMDIENR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LP32</accession>
    <name>A0A1M5LP32_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0406</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG66902">
        <property type="protein sequence ID" value="SHG66902"/>
        <property type="gene ID" value="SAMN05444003_0406"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG66902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="54" mass="6090" checksum="24D1D108F987FAE0" modified="2017-03-15" version="1">MKRFLTQTYCAKPHELAALARDGIGWGHDLHCGSFRAPKAPHVTSFQIGKRRVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LQ38</accession>
    <name>A0A1M5LQ38_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0411</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67020.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG67020">
        <property type="protein sequence ID" value="SHG67020"/>
        <property type="gene ID" value="SAMN05444003_0411"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG67020.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="74" mass="7909" checksum="895DFEAF95470FC0" modified="2017-03-15" version="1">MSLQVTAEEIEVNTLRIEYLGTLFKQCGTDPAVGRTNSVILYSALIGMEALTHAGLADLRTDLGSLLETLLVAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LTG6</accession>
    <name>A0A1M5LTG6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">N-acetyl-gamma-glutamyl-phosphate reductase</fullName>
            <shortName evidence="1">AGPR</shortName>
            <ecNumber evidence="1">1.2.1.38</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">N-acetyl-glutamate semialdehyde dehydrogenase</fullName>
            <shortName evidence="1">NAGSA dehydrogenase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">argC</name>
        <name evidence="3" type="ORF">SAMN05444003_0467</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the NADPH-dependent reduction of N-acetyl-5-glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>N-acetyl-L-glutamate 5-semialdehyde + NADP(+) + phosphate = H(+) + N-acetyl-L-glutamyl 5-phosphate + NADPH</text>
            <dbReference type="Rhea" id="RHEA:21588"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29123"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:57936"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.2.1.38"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-arginine biosynthesis; N(2)-acetyl-L-ornithine from L-glutamate: step 3/4.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.38" evidence="1"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68301.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900371.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0467"/>
    <dbReference type="EnsemblBacteria" id="SHG68301">
        <property type="protein sequence ID" value="SHG68301"/>
        <property type="gene ID" value="SAMN05444003_0467"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00108"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003942">
        <property type="term" value="F:N-acetyl-gamma-glutamyl-phosphate reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006526">
        <property type="term" value="P:arginine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00150">
        <property type="entry name" value="ArgC_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000706">
        <property type="entry name" value="AGPR_type-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000534">
        <property type="entry name" value="Semialdehyde_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012280">
        <property type="entry name" value="Semialdhyde_DH_dimer_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01118">
        <property type="entry name" value="Semialdhyde_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02774">
        <property type="entry name" value="Semialdhyde_dhC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00859">
        <property type="entry name" value="Semialdhyde_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01850">
        <property type="entry name" value="argC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="1" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1" id="KW-0521">NADP</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Semialdhyde_dh" evidence="2">
        <location>
            <begin position="4"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG68301.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="342" mass="36571" checksum="E9DAB3FD88E718F4" modified="2017-03-15" version="1">MTYNVAILGASGYTGAELVRLIATHPSLKIVGLSGNSKAGLSMAQVFPHLRHLDLPVLTTIEDMSFDGVDLVFCALPHATSQKVISGLPRHLRIVDLSADFRLRDPAEYEKWYGKPHSAVEMQKEAVYGLTEFYRDEISQALLVAGTGCNAATGQYALRPLIAAGVIDLDNIIIDLKAAVSGAGRALKENLLHAELSEGYHAYAVGGTHRHLGEFDQEFSAVAGRPVHVQFTPHLVPANRGILATVYVQGDVEAIYGALDAAYAEEPFVTVLPKGEAPSTKHIRASNFCHIGVVADRVSGRVMVIAALDNLTKGSSGQALQNANLMLGLPETEGLMLAPVFP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LUB4</accession>
    <name>A0A1M5LUB4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Fatty acid hydroxylase superfamily protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0480</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898997.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0480"/>
    <dbReference type="EnsemblBacteria" id="SHG68611">
        <property type="protein sequence ID" value="SHG68611"/>
        <property type="gene ID" value="SAMN05444003_0480"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008610">
        <property type="term" value="P:lipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006694">
        <property type="entry name" value="Fatty_acid_hydroxylase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04116">
        <property type="entry name" value="FA_hydroxylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="97"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="123"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="domain" description="Fatty acid hydroxylase" evidence="2">
        <location>
            <begin position="43"/>
            <end position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG68611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="241" mass="27544" checksum="0BEF63952A408FC7" modified="2017-03-15" version="1">MIPTLRVLMHMGGLHRLAPFFLIGLVVLFAQFEAWMLIALGYGVVAQFFVEYCMHRFLYHREPPTDQGVFNDLYRSHIGHHEFPTDPEFFTGDDHWFAVRFGLVSVVVHTLALWPLIGVTNAALFAVVAIFVGSIGAFTFYEYCHTIAHLNVPKGRIAQRITRSHLAHHYQDHHATYHVSFGMGWIDRLFGTKHDADVARQRYDRETMLSLGMDPEDLRLVTARKAYGITKMPRNSAAKST</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LYZ3</accession>
    <name>A0A1M5LYZ3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Peptide chain release factor 1</fullName>
            <shortName evidence="5">RF-1</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">prfA</name>
        <name evidence="8" type="ORF">SAMN05444003_0526</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 5">Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="PTM">
        <text evidence="5">Methylated by PrmC. Methylation increases the termination efficiency of RF1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the prokaryotic/mitochondrial release factor family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69613.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899054.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0526"/>
    <dbReference type="EnsemblBacteria" id="SHG69613">
        <property type="protein sequence ID" value="SHG69613"/>
        <property type="gene ID" value="SAMN05444003_0526"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016149">
        <property type="term" value="F:translation release factor activity, codon specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00093">
        <property type="entry name" value="Rel_fac_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005139">
        <property type="entry name" value="PCRF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000352">
        <property type="entry name" value="Pep_chain_release_fac_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045853">
        <property type="entry name" value="Pep_chain_release_fac_I_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004373">
        <property type="entry name" value="RF-1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03462">
        <property type="entry name" value="PCRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00472">
        <property type="entry name" value="RF-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00937">
        <property type="entry name" value="PCRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75620">
        <property type="entry name" value="SSF75620"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00019">
        <property type="entry name" value="prfA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00745">
        <property type="entry name" value="RF_PROK_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 5" id="KW-0488">Methylation</keyword>
    <keyword evidence="4 5" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RF_PROK_I" evidence="7">
        <location>
            <begin position="222"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="278"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="278"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="modified residue" description="N5-methylglutamine" evidence="5">
        <location>
            <position position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002986"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010835"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00093"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS00745"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG69613.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="351" mass="38675" checksum="3828CC214828FA3B" modified="2017-03-15" version="1">MIAQEKIAQLIDRFQFIEAKMSEGLDGAEIAALAKEYADLKPIVETVSAYKSLIDQIAEAEEMLSDPEMKELAEAELPELREQLEASEHGVQLALLPKDAADGRPALLEIRPGTGGDEAGLFAGDLLRMYQRYAERHGWSFEILEQSLSELGGVKEVTARVAGDGVFARMKFESGVHRVQRVPETESGGRVHTSAATVAVLPEAEDVDIEINPADIRIDTMRASGSGGQHVNTTDSAVRIVHEPTGIIVVSSEKSQHRNREIAMQVLKTRLYDLERQKAHDERSADRKAQVGSGDRSERIRTYNFPQGRMTDHRINLTLYSLGQVMQGDLDEIIDALIADAQATMLAEMGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M187</accession>
    <name>A0A1M5M187_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Lipid-A-disaccharide synthase</fullName>
            <ecNumber evidence="3">2.4.1.182</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_0592</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Condensation of UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>a lipid X + a UDP-2-N,3-O-bis[(3R)-3-hydroxyacyl]-alpha-D-glucosamine = a lipid A disaccharide + H(+) + UDP</text>
            <dbReference type="Rhea" id="RHEA:67828"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:58223"/>
            <dbReference type="ChEBI" id="CHEBI:137748"/>
            <dbReference type="ChEBI" id="CHEBI:176338"/>
            <dbReference type="ChEBI" id="CHEBI:176343"/>
            <dbReference type="EC" id="2.4.1.182"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the LpxB family.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.182" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG71041.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0592"/>
    <dbReference type="EnsemblBacteria" id="SHG71041">
        <property type="protein sequence ID" value="SHG71041"/>
        <property type="gene ID" value="SAMN05444003_0592"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008915">
        <property type="term" value="F:lipid-A-disaccharide synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009245">
        <property type="term" value="P:lipid A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003835">
        <property type="entry name" value="Glyco_trans_19"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30372">
        <property type="entry name" value="PTHR30372"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02684">
        <property type="entry name" value="LpxB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00215">
        <property type="entry name" value="lpxB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="6" id="KW-0441">Lipid A biosynthesis</keyword>
    <keyword evidence="5" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="9" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007868"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00020902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00029342"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG71041.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="378" mass="40410" checksum="EC1FF601930FFB4E" modified="2017-03-15" version="1">MSLKVFVIAGEVSGDKLGGALMAGLKSLTAVDFTGVGGPLMEEQGLNSRFPMSELSLMGIVEILPKYRDLKKRIRETADAIIAEKPDVLITIDSPDFCLRVARLVKAASDTRTIHYVAPTVWAWRPGRAEKMAKHIDHVLALFPFEPPFMEEAGMTCDFVGHPVVTETQATDAEAAEFRAAHGLTDAPVILALPGSRRGEVSRLADRFGEALDKVLQVRPDARIVIPCAAPVYDLVQQQTRGWSGDPILLAPDDPGKLTAFKAADVALAASGTVSLELAAAQTAMVIAYDMAWLSRAIISRMLKIDTVTLVNLVSETRAVPEFIGKDCEPGKIAGSLLTTLAEPAGQMEAMSLTMERLGAGGEPPGLRAAKSVLGQLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M259</accession>
    <name>A0A1M5M259_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0602</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG71310.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG71310">
        <property type="protein sequence ID" value="SHG71310"/>
        <property type="gene ID" value="SAMN05444003_0602"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG71310.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="58" mass="6748" checksum="A6E9A23DC481095E" modified="2017-03-15" version="1">MNPRWFLRAKRLAQSPPSWGRVKLVFAIILLCAALWGYEQVFGWPEALTPNNHRRNGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M2V4</accession>
    <name>A0A1M5M2V4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Trk system potassium uptake protein TrkA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_0614</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG71627.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899166.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0614"/>
    <dbReference type="EnsemblBacteria" id="SHG71627">
        <property type="protein sequence ID" value="SHG71627"/>
        <property type="gene ID" value="SAMN05444003_0614"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015079">
        <property type="term" value="F:potassium ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1450">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006036">
        <property type="entry name" value="K_uptake_TrkA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006037">
        <property type="entry name" value="RCK_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036721">
        <property type="entry name" value="RCK_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003148">
        <property type="entry name" value="RCK_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02080">
        <property type="entry name" value="TrkA_C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02254">
        <property type="entry name" value="TrkA_N"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00335">
        <property type="entry name" value="KUPTAKETRKA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF116726">
        <property type="entry name" value="SSF116726"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51202">
        <property type="entry name" value="RCK_C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51201">
        <property type="entry name" value="RCK_N"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0406">Ion transport</keyword>
    <keyword evidence="4" id="KW-0520">NAD</keyword>
    <keyword evidence="3" id="KW-0630">Potassium</keyword>
    <keyword evidence="2" id="KW-0633">Potassium transport</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="domain" description="RCK N-terminal" evidence="6">
        <location>
            <begin position="2"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="domain" description="RCK C-terminal" evidence="7">
        <location>
            <begin position="144"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="domain" description="RCK N-terminal" evidence="6">
        <location>
            <begin position="235"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="domain" description="RCK C-terminal" evidence="7">
        <location>
            <begin position="372"/>
            <end position="453"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00017378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG71627.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="458" mass="49910" checksum="98F364AC9109C90A" modified="2017-03-15" version="1">MKVIICGAGQVGWQIARHLSGEKNDVTVVDNNPELVRRATDTLDVQGISGFASYPDILERAGAEDADMIIAATHSDEVNMVTCQVAHSVFAIQRKIARLRSQSYLDAIYSDLYRRDHLPIDVVISPEKEVAEAALQRLAAPAAFDTESFLEGKAQLLGITIEEDCPVINTPLRQLTDLFSTLKAIVVGIRREGALFVPMAGDQLFPEDEVYLFVDTKDMTRTLEIFGKTQSKQERIVIIGGGNVGLGVARALEARTERVRVKMVELDRDIAEHAADNLERTIVLHGDGLSSGILEEAGIENADAVLAVTDDDKTNLLASVRSKEIGNPMAICLINDPTLVPLMGPLSIDAYINPRATTVSSILQHIRHGRVRGVYSIGDAEAEVIEAQVLGTSPISGQRIKDIDFPEGTIVGGIMQNGEMQKPKGDTRINEGDVIALFCLSEDVSEVERLLQVTIDFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M716</accession>
    <name>A0A1M5M716_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0650</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72543.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899230.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0650"/>
    <dbReference type="EnsemblBacteria" id="SHG72543">
        <property type="protein sequence ID" value="SHG72543"/>
        <property type="gene ID" value="SAMN05444003_0650"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021516">
        <property type="entry name" value="DUF3179"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11376">
        <property type="entry name" value="DUF3179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012070317" evidence="1">
        <location>
            <begin position="27"/>
            <end position="460"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG72543.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="460" mass="50073" checksum="23E1FAF2E27A1B91" modified="2017-03-15" version="1">MFLTASKRIAAIAAAVFMILSSNSTAAFAQTANELPSYVIEQFGTPPTVPEGAFDEELLSHIQVALVDSLEGAGWGQPQSNALRAIGASADPRLAWIISDFLRFSSGRNLNAELAAAASELLGKEMGTSDAWGNVTDHLMAWDIPAPPDYLDYKRRVFTRIVPGWEGIFVEGDIDWRHVSWGGVLIDDRPYDTTDEACNCIPAADNPEVTSAEEADWLSDDTVIFGIEINGEARAYPRRIMEVREMINDTLGGRDLGIPYCTLCGAAQAYYTDELDYDIERPILRTSGLLIRSNKVMYDITSGSVFDTFLGKAVTGPLAELGVVLEQAPVITTTWGEWKAVHPDTTVLAEHLALGRDFDFRNNRDAEGPIFPVGDVDPRLPVHEDIIGIVTASGTPIAFPRANALVALTDGQAVGFENVRLVLDAGGIKAVDANGDDLGSHQAFWFAWSQFHPETELWQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M9S4</accession>
    <name>A0A1M5M9S4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Enoyl-CoA hydratase/carnithine racemase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0717</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74032.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900393.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0717"/>
    <dbReference type="EnsemblBacteria" id="SHG74032">
        <property type="protein sequence ID" value="SHG74032"/>
        <property type="gene ID" value="SAMN05444003_0717"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG74032.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="260" mass="27638" checksum="1B68FFC532FA3680" modified="2017-03-15" version="1">MTILIREDIGAVAKLTLNSPERLNALSDEMLAVLTSMLDTLSSDASVKAVIIAGSGKAFCAGHDLKQMQAKRADDDGGAAAFKDLFDRCATMMGKIQSLPQPVIAQVHGIATAAGCQLVATCDLAVAAEGTRFGVNGVNIGLFCSTPMVALTRNIGRKAAFEMLTTGRFIETEEAQRLGLINRHVPADDLAEATLELAQAIAGKLGSAVRHGKGAFYEQAEMTTQDAYAFTGDVMVRNMADDDTDEGINAFLEKRPPNWE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MA41</accession>
    <name>A0A1M5MA41_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">tRNA/rRNA methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_0722</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74152.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899365.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0722"/>
    <dbReference type="EnsemblBacteria" id="SHG74152">
        <property type="protein sequence ID" value="SHG74152"/>
        <property type="gene ID" value="SAMN05444003_0722"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008173">
        <property type="term" value="F:RNA methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006396">
        <property type="term" value="P:RNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029028">
        <property type="entry name" value="Alpha/beta_knot_MTases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004384">
        <property type="entry name" value="RNA_MeTrfase_TrmJ/LasT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001537">
        <property type="entry name" value="SpoU_MeTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029026">
        <property type="entry name" value="tRNA_m1G_MTases_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42786">
        <property type="entry name" value="PTHR42786"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00588">
        <property type="entry name" value="SpoU_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004808">
        <property type="entry name" value="LasT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75217">
        <property type="entry name" value="SSF75217"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="SpoU_methylase" evidence="5">
        <location>
            <begin position="10"/>
            <end position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007228"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00588"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG74152.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="248" mass="27650" checksum="9D737858BF519718" modified="2017-03-15" version="1">MPSAAPQPAFVLIRPQMGENIGAAARAMLNFGLDRMRITSPRDGWPNQKAVAMASGAGRVLDYAQLFDSTADAIGDCVYVYATTARPRELTKPVFSPEAAMQDAAQRIAKGQKVAVMFGPERAGMENDDISRANAIVTVPVNPDFPSLNLAQCVLLMGYEWRRATEEVVPQTVSMEGDWAEQIEIEKLADHYETRMQDAGFFYPEAKAANMKINLRNLWSRMPLTRADVQMLHGVLRQMVRWKERGDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MAB2</accession>
    <name>A0A1M5MAB2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ornithine-acyl[acyl carrier protein] N-acyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0725</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74232.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0725"/>
    <dbReference type="EnsemblBacteria" id="SHG74232">
        <property type="protein sequence ID" value="SHG74232"/>
        <property type="gene ID" value="SAMN05444003_0725"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG74232.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="249" mass="27917" checksum="BC02932E2007849A" modified="2017-03-15" version="1">MSDTPNFRAFFASNDAHLAAAQRLRHDVFVRELGALPTDASKEIDRFDEHADHLILVDESRCENDRVVGVYRLMDKRQAESAGGFSSANEYDLSPLVSSDRRILELGRSCVHPDYRGGMALMHLWQALAEHIRSNDFEVLFGVASFHGADANEHAESLTLLHQNHLAPMPMRPSSKDPAEFNRKSRDALDRRKAMANMPSLIKAYLRLGGTIGDGAFEDKAFNTTDVCMIVDVAEMDDRQRSLYAKAPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MBF5</accession>
    <name>A0A1M5MBF5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Bile acid:Na+ symporter, BASS family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0740</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74608.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899393.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0740"/>
    <dbReference type="EnsemblBacteria" id="SHG74608">
        <property type="protein sequence ID" value="SHG74608"/>
        <property type="gene ID" value="SAMN05444003_0740"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002657">
        <property type="entry name" value="BilAc:Na_symport/Acr3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004710">
        <property type="entry name" value="Bilac:Na_transpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038770">
        <property type="entry name" value="Na+/solute_symporter_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10361">
        <property type="entry name" value="PTHR10361"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01758">
        <property type="entry name" value="SBF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="46"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="75"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="102"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="146"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="180"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="205"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="254"/>
            <end position="279"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG74608.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="298" mass="31063" checksum="15C3C9F6FE58EF98" modified="2017-03-15" version="1">MMDETLLNFSRGSLTLLNGILAIVMFSIAIDLSTRDFKSLAKAPKPVLVGLASQFLVLPFLTYLLVLVAQPQASVALGLILVAACPGGNISNFITHRAGGNAALSVSMTGFATVGAIVLTPINIAFWGGLYGPSAEILKATSIDPISIAITVSLMLVLPLILGVTLNAKRPDVTQRIRRPLQWLSMGIFVAFIILALAANWTHFLAFAGGIAGLVIVHNALGFGGGYTIATLAGLSPYDRRAVTIETGIQNSGLGLVLIFGFFGGLGGMAVVAAFWGIWHAIAGLTLAAFMARTEAAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MBG7</accession>
    <name>A0A1M5MBG7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Short-chain dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0738</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74561.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899389.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0738"/>
    <dbReference type="EnsemblBacteria" id="SHG74561">
        <property type="protein sequence ID" value="SHG74561"/>
        <property type="gene ID" value="SAMN05444003_0738"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG74561.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="254" mass="27174" checksum="186534107B0152C7" modified="2017-03-15" version="1">MKTAVISGGNGGLGRALAARLEAEGWHCVLLDVNISGLQKTVSRTPIAIDLTDSAALQAACGEIVAMRSSIDLVIYNAGVSQIGPFEDTSMESHRRVFDINYFAAVDMARAFVQPVRDSKGTHLAISSVAGFAPLHHRTAYAASKHAMQGFFASLRSEEAPFGVSCLIAAPSFIATNIGNDDRSEDGIVRPGSAADGIDYMSPESAADVILRGLKRTKAFIPVGRVARIASLLMRASPRFYQTMMRRKISNNQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MBT5</accession>
    <name>A0A1M5MBT5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Amino acid synthesis</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0748</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74738.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899405.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0748"/>
    <dbReference type="EnsemblBacteria" id="SHG74738">
        <property type="protein sequence ID" value="SHG74738"/>
        <property type="gene ID" value="SAMN05444003_0748"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009569">
        <property type="entry name" value="AA_synth_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035936">
        <property type="entry name" value="BB2672"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06684">
        <property type="entry name" value="AA_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160519">
        <property type="entry name" value="SSF160519"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG74738.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="199" mass="21917" checksum="A27D75FE1EB6621B" modified="2017-03-15" version="1">MKPQIRKIVTYDDEILIEGFRAAKRPWRMFAVAAIIQNPWAGRFVEDLKPEIQAFGPILGKMMTERMLALAGSGEAIEAYGKAAVVGLDGEIEHASGLIHTLRFGNHYRQAVDAKSYLAFTNTRGGANAPIMVPLMDTNDVGRRSHYLTIQFAIPDAPRDDEVVIVLGAATSGRPHHRIGDRYQDLKDLGHDVDNPAAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MD11</accession>
    <name>A0A1M5MD11_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0769</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75208.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG75208">
        <property type="protein sequence ID" value="SHG75208"/>
        <property type="gene ID" value="SAMN05444003_0769"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG75208.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="58" mass="6617" checksum="D603F93F1232C883" modified="2017-03-15" version="1">MTDGKEIDRVELVLGLARLIWESELSIGDYFDTVGIQPDDDLFTELYGIFTGWHNPNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MEA9</accession>
    <name>A0A1M5MEA9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Acetolactate synthase-1/2/3 large subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0790</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the TPP enzyme family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75688.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899467.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0790"/>
    <dbReference type="EnsemblBacteria" id="SHG75688">
        <property type="protein sequence ID" value="SHG75688"/>
        <property type="gene ID" value="SAMN05444003_0790"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044281">
        <property type="term" value="P:small molecule metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012000">
        <property type="entry name" value="Thiamin_PyroP_enz_cen_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012001">
        <property type="entry name" value="Thiamin_PyroP_enz_TPP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000399">
        <property type="entry name" value="TPP-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045229">
        <property type="entry name" value="TPP_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011766">
        <property type="entry name" value="TPP_enzyme-bd_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18968">
        <property type="entry name" value="PTHR18968"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02775">
        <property type="entry name" value="TPP_enzyme_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00205">
        <property type="entry name" value="TPP_enzyme_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02776">
        <property type="entry name" value="TPP_enzyme_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="SSF52467"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00187">
        <property type="entry name" value="TPP_ENZYMES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0786">Thiamine pyrophosphate</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TPP_enzyme_N" evidence="6">
        <location>
            <begin position="1"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="domain" description="TPP_enzyme_M" evidence="4">
        <location>
            <begin position="186"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="domain" description="TPP_enzyme_C" evidence="5">
        <location>
            <begin position="375"/>
            <end position="521"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007812"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU362132"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG75688.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="532" mass="56043" checksum="E4431A81B52169BD" modified="2017-03-15" version="1">MRAADVIAKRLYEQGCRWAFGMPGGEVLTLLDALDKAGITFVMCRHENAAGFMAEATYHRTGAPGILLATVGPGALNGINVVENARQDRVPMIVLTGCVDAHTAQIYTHQVLDQPQVFRPITKESFTLNARAAHVMIDKAIGIATEGRPGPVHIDVPISVADAEATGEGILRPDALPVVATGPLMDDVKARLAAAKRPLIIAGLDVSSDAGAAAVTRAAEALQAPVITSYKAKGLIPESHGLALGGAGLSPKADTILLPLIEQADVILCIGYDPIEMRPGWTDPWDPKTQTIIDVTAVSNTHYMHQATHNIVGDPVETVNALLPDNRLSGWDTNAVVEAKRAITAAFAPSEHWGPGQAIAICQEVLPDDTLITADSGAHRILLSQMWNCGFPRALTQSSGFCTMGCAVPLAMGAKLVDPDRTVVSFSGDAGFLMVVGELATAAEQKIAPIFVVFVDASLALIELKQRGRQMKNVGVDFDRTDVAAVGRAFGGNGVSVSDADALRGALAQAVEADTFTVIAVEIDKRAYDGTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MHU5</accession>
    <name>A0A1M5MHU5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">5-methyltetrahydrofolate--homocysteine methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0816</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76303.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899497.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0816"/>
    <dbReference type="EnsemblBacteria" id="SHG76303">
        <property type="protein sequence ID" value="SHG76303"/>
        <property type="gene ID" value="SAMN05444003_0816"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031419">
        <property type="term" value="F:cobalamin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1240.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003759">
        <property type="entry name" value="Cbl-bd_cap"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006158">
        <property type="entry name" value="Cobalamin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036724">
        <property type="entry name" value="Cobalamin-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036594">
        <property type="entry name" value="Meth_synthase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02310">
        <property type="entry name" value="B12-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02607">
        <property type="entry name" value="B12-binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01018">
        <property type="entry name" value="B12-binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47644">
        <property type="entry name" value="SSF47644"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52242">
        <property type="entry name" value="SSF52242"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51332">
        <property type="entry name" value="B12_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51337">
        <property type="entry name" value="B12_BINDING_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="B12-binding N-terminal" evidence="2">
        <location>
            <begin position="9"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="domain" description="B12-binding" evidence="1">
        <location>
            <begin position="103"/>
            <end position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG76303.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="231" mass="25235" checksum="7118C7431706C1D4" modified="2017-03-15" version="1">MSDEEDDIILSELNDEDLVAQMFDDLYDGMKEEIEEGVNILLERDWAPYRILTEALVGGMTIVGNDFRDGILFVPEVLLAANAMKGGMAILKPLLAETGAPRVGKMVIGTVKGDIHDIGKNLVSMMMEGAGFEVVDLGINNPVENYMEALENEQPDILGMSALLTTTMPYMKVVIDTMVEKGLRDDYIVLVGGAPLNEEFGKAIGADAYCRDAAVAVETAKEFVARKHNQM</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MI90</accession>
    <name>A0A1M5MI90_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">5-methyltetrahydrofolate--homocysteine methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0846</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77050.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899545.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0846"/>
    <dbReference type="EnsemblBacteria" id="SHG77050">
        <property type="protein sequence ID" value="SHG77050"/>
        <property type="gene ID" value="SAMN05444003_0846"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042558">
        <property type="term" value="P:pteridine-containing compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011005">
        <property type="entry name" value="Dihydropteroate_synth-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000489">
        <property type="entry name" value="Pterin-binding_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00809">
        <property type="entry name" value="Pterin_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51717">
        <property type="entry name" value="SSF51717"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50972">
        <property type="entry name" value="PTERIN_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pterin-binding" evidence="2">
        <location>
            <begin position="21"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="326"/>
            <end position="356"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50972"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG77050.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="356" mass="38127" checksum="73CA356DA1720E2C" modified="2017-03-15" version="1">MTRTIVESKTKTAVIGFDQPFTVIGERINPTGRKVLNEELERGDFSRVEADALAQVAAGATILDINSGAVFSNKMAEDPRYADNNFVEPTLMRELVEKVQAVTDCPLCIDSSVPGALENGLAAAEGRPLLNSVTGEEERLEMVLPLVAKYNVPVVAISNDDTGISEDPDVRFAVAKKIVERAADFGIPAHDIVVDPLVMPIGAMGTAGLQVFTLVRRLREELGVNTTCGASNISFGLPNRHGINNAFLPMAMTAGMTSAIMNPVALPIGPKKLAEKKAEVEAAGVILPEGMDDEAFVQLFGMGSTKPKAGKEMEAIRAANFLTNNDEGGGEWIKFNRAPAKPGEGRERGGRRRRRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MIN3</accession>
    <name>A0A1M5MIN3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">16S rRNA (Cytosine967-C5)-methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_0858</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77324.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899561.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0858"/>
    <dbReference type="EnsemblBacteria" id="SHG77324">
        <property type="protein sequence ID" value="SHG77324"/>
        <property type="gene ID" value="SAMN05444003_0858"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001510">
        <property type="term" value="P:RNA methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001678">
        <property type="entry name" value="MeTrfase_RsmB/NOP2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023267">
        <property type="entry name" value="RCMT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22807">
        <property type="entry name" value="PTHR22807"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01189">
        <property type="entry name" value="Methyltr_RsmB-F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR02008">
        <property type="entry name" value="RCMTFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51686">
        <property type="entry name" value="SAM_MT_RSMB_NOP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4 6" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 4" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 4 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="SAM_MT_RSMB_NOP" evidence="5">
        <location>
            <begin position="136"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="4">
        <location>
            <position position="342"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="249"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="289"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51686"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG77324.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="389" mass="42145" checksum="BBB89C1C1E82C0C6" modified="2017-03-15" version="1">MTPSARYAAAIAVLDVILGGEPAERALTNWARRNRYAGSKDRAAVRGHVFDVLRKKRSCAAFGAGGDGRALVLGLLRQTGIDPLSIFSGEGYAPEPLTEDELSFEEPSLSEAEAADLPDWVWPLWRDGLGDKAISAAQSQRERAKVALRVNERLGSVDSALQSLASDEIEAIEHPNVIGCLNAVSNQRRLAQGKAYQTGLVELQDASSQAAVRSWPISTGDRVLDFCAGGGGKSLALAAIFDASVTAHDSVFDRMADIPVRAARARASIKVVKSEDLDTLPLFDVVLCDAPCSGSGTWRRTPDAKWRLTEDELRDFQDRQVSILESASKFLKKGGVLIYSTCSVLQVENGETGARFLNGNPNFERIAEELIVPTSENDGFYHCVYKGIY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MIR3</accession>
    <name>A0A1M5MIR3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Beta-glucosidase</fullName>
            <ecNumber evidence="9">3.2.1.21</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_0855</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>Hydrolysis of terminal, non-reducing beta-D-glucosyl residues with release of beta-D-glucose.</text>
            <dbReference type="EC" id="3.2.1.21"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 9">Belongs to the glycosyl hydrolase 1 family.</text>
    </comment>
    <dbReference type="EC" id="3.2.1.21" evidence="9"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77270.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899554.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0855"/>
    <dbReference type="EnsemblBacteria" id="SHG77270">
        <property type="protein sequence ID" value="SHG77270"/>
        <property type="gene ID" value="SAMN05444003_0855"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008422">
        <property type="term" value="F:beta-glucosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102483">
        <property type="term" value="F:scopolin beta-glucosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030245">
        <property type="term" value="P:cellulose catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001360">
        <property type="entry name" value="Glyco_hydro_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018120">
        <property type="entry name" value="Glyco_hydro_1_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017736">
        <property type="entry name" value="Glyco_hydro_1_beta-glucosidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10353">
        <property type="entry name" value="PTHR10353"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00232">
        <property type="entry name" value="Glyco_hydro_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00131">
        <property type="entry name" value="GLHYDRLASE1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03356">
        <property type="entry name" value="BGL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00572">
        <property type="entry name" value="GLYCOSYL_HYDROL_F1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="2" id="KW-0136">Cellulose degradation</keyword>
    <keyword evidence="4 9" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0624">Polysaccharide degradation</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="405"/>
            <end position="406"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="6">
        <location>
            <position position="167"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="6 8">
        <location>
            <position position="352"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="22"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="122"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="166"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="294"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="398"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010838"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023001"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR617736-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR617736-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU361175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG77270.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="441" mass="49766" checksum="CAC808F44035D947" modified="2017-03-15" version="1">MNFKRSEFPDGFAFGAATAAYQIEGHSFGGAGPTHWDTFAAAPGNVVRAEDGSVACDHYHLYESDLDLLKDAGMDAYRFSTSWARVMPEGRGAVNQEGLDYYDRLVDAMLDRGLKPYQTLYHWEMPSALADLGGWTNPDVADWFADFTEVITRRIGDRVEAVATLNEPWCVAFLSHFLGHHAPGLRDIRAASRAMHHVMKAHGRAMTRLRSLGQDNCGIVLNFDRTEPADDSQIAKDATATADAIFNRWFIEAIQRGTYPEEALAGFGPHMPANWQDDMAEISQDIDWLGVNYYTRHKVSADPKTPWPHVSSAEGPGEKTQMGWEIYPEGLRYFLTWLSKEYVGEMPIFVTENGMAWDDKVENGAVYDPVRMGFVDEHMQATLKAIEEGANVKGFFYWSLLDNYEWAFGYEKRFGMVHVDFDTLHRTPKASYHALKDAITR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MNL6</accession>
    <name>A0A1M5MNL6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Nitrogen regulatory protein P-II</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0923</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="1">Homotrimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the P(II) protein family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78777.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900417.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0923"/>
    <dbReference type="EnsemblBacteria" id="SHG78777">
        <property type="protein sequence ID" value="SHG78777"/>
        <property type="gene ID" value="SAMN05444003_0923"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030234">
        <property type="term" value="F:enzyme regulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006808">
        <property type="term" value="P:regulation of nitrogen utilization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002187">
        <property type="entry name" value="N-reg_PII"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011322">
        <property type="entry name" value="N-reg_PII-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015867">
        <property type="entry name" value="N-reg_PII/ATP_PRibTrfase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017918">
        <property type="entry name" value="N-reg_PII_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002332">
        <property type="entry name" value="N-reg_PII_urydylation_site"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30115">
        <property type="entry name" value="PTHR30115"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00543">
        <property type="entry name" value="P-II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF039144">
        <property type="entry name" value="GlnB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00340">
        <property type="entry name" value="PIIGLNB"/>
    </dbReference>
    <dbReference type="SMART" id="SM00938">
        <property type="entry name" value="P-II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54913">
        <property type="entry name" value="SSF54913"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00638">
        <property type="entry name" value="PII_GLNB_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51343">
        <property type="entry name" value="PII_GLNB_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00496">
        <property type="entry name" value="PII_GLNB_UMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="modified residue" description="O-UMP-tyrosine" evidence="4">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011233"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00015681"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR039144-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR602187-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG78777.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="112" mass="12238" checksum="8FC07EDA675CBF16" modified="2017-03-15" version="1">MKKIEAIIKPFKLDEVKEALQDVGVQGLSVVEVKGFGRQKGHTELYRGAEYVVDFLPKVKIEVVLADDQVDAAVQAIIESAKTDKIGDGKIFVSPIEQAIRIRTGESGEDAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MS55</accession>
    <name>A0A1M5MS55_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">NADH-quinone oxidoreductase subunit I</fullName>
            <ecNumber evidence="6">7.1.1.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">NADH dehydrogenase I subunit I</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">NDH-1 subunit I</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">nuoI</name>
        <name evidence="8" type="ORF">SAMN05444003_0996</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>a quinone + 5 H(+)(in) + NADH = a quinol + 4 H(+)(out) + NAD(+)</text>
            <dbReference type="Rhea" id="RHEA:57888"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="6">Binds 2 [4Fe-4S] clusters per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">NDH-1 is composed of 14 different subunits. Subunits NuoA, H, J, K, L, M, N constitute the membrane sector of the complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the complex I 23 kDa subunit family.</text>
    </comment>
    <dbReference type="EC" id="7.1.1.-" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80270.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899739.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0996"/>
    <dbReference type="EnsemblBacteria" id="SHG80270">
        <property type="protein sequence ID" value="SHG80270"/>
        <property type="gene ID" value="SAMN05444003_0996"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050136">
        <property type="term" value="F:NADH dehydrogenase (quinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048038">
        <property type="term" value="F:quinone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01351">
        <property type="entry name" value="NDH1_NuoI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010226">
        <property type="entry name" value="NADH_quinone_OxRdtase_chainI"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10849">
        <property type="entry name" value="PTHR10849"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12838">
        <property type="entry name" value="Fer4_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01971">
        <property type="entry name" value="NuoI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 6" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 6" id="KW-0408">Iron</keyword>
    <keyword evidence="5 6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0520">NAD</keyword>
    <keyword evidence="6" id="KW-0874">Quinone</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="6" id="KW-1278">Translocase</keyword>
    <keyword evidence="6" id="KW-0830">Ubiquinone</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="7">
        <location>
            <begin position="52"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="7">
        <location>
            <begin position="92"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="62"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="65"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="68"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="72"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="101"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="104"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="107"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="111"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01351"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG80270.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="161" mass="18630" checksum="1874E64E0DD62C43" modified="2017-03-15" version="1">MDYNRAAKYFLLTDVWKGFGLGVKYFFKPKATVNYPHEKGPLSPRFRGEHALRRYPNGEERCIACKLCEAVCPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTETREELFYDKEKLLSNGDRWEAEIARNLEMDAPYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MT42</accession>
    <name>A0A1M5MT42_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1001</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899744.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1001"/>
    <dbReference type="EnsemblBacteria" id="SHG80377">
        <property type="protein sequence ID" value="SHG80377"/>
        <property type="gene ID" value="SAMN05444003_1001"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020349">
        <property type="entry name" value="Uncharacterised_14.7kDa"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17267">
        <property type="entry name" value="DUF5333"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG80377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="135" mass="14745" checksum="EAB216D6432FB36C" modified="2017-03-15" version="1">MSRLFIVSIVSMISLVALSGSLQAKPELREVAHVRNGIITVGIAYEISQKCGSISPRYIRGLNFLEGLKGHARNLGYTNREIDDYINDSNEKNRLEALGRSMMADMGIVEGEEATYCAVGRAEIEAGSGIGRLLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MVY8</accession>
    <name>A0A1M5MVY8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Paraquat-inducible protein A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1056</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81494.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899793.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1056"/>
    <dbReference type="EnsemblBacteria" id="SHG81494">
        <property type="protein sequence ID" value="SHG81494"/>
        <property type="gene ID" value="SAMN05444003_1056"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007498">
        <property type="entry name" value="PqiA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04403">
        <property type="entry name" value="PqiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="50"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="98"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="144"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="168"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG81494.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="207" mass="22211" checksum="1EDA0979BFFC918E" modified="2017-03-15" version="1">MSLPPLEDLVACSQCDTLHNAMTLSEGETAACRQCGTPLMTSRSSALARVLSLALTSVVLMIAAISFPFLDLDVQGRQSGTSVIGAVLAFQSSWGFPLAIAVAGFIIILPLTRLIALIYAIGPLTRGAKPRRYARQAFALAERLRPWSMVEIFMVGVTVALIKVAGLATVTIGPAFWAFAALVVITVLKDQLICRYSIWEELDTARA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MZ56</accession>
    <name>A0A1M5MZ56_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">O-succinylhomoserine sulfhydrylase</fullName>
            <shortName evidence="2">OSH sulfhydrylase</shortName>
            <shortName evidence="2">OSHS sulfhydrylase</shortName>
            <ecNumber evidence="2">2.5.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">metZ</name>
        <name evidence="5" type="ORF">SAMN05444003_1103</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the formation of L-homocysteine from O-succinyl-L-homoserine (OSHS) and hydrogen sulfide.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>hydrogen sulfide + O-succinyl-L-homoserine = L-homocysteine + succinate</text>
            <dbReference type="Rhea" id="RHEA:27826"/>
            <dbReference type="ChEBI" id="CHEBI:29919"/>
            <dbReference type="ChEBI" id="CHEBI:30031"/>
            <dbReference type="ChEBI" id="CHEBI:57661"/>
            <dbReference type="ChEBI" id="CHEBI:58199"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 2 4">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-acid biosynthesis; L-methionine biosynthesis via de novo pathway; L-homocysteine from O-succinyl-L-homoserine: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the trans-sulfuration enzymes family. MetZ subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.-" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82541.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1103"/>
    <dbReference type="EnsemblBacteria" id="SHG82541">
        <property type="protein sequence ID" value="SHG82541"/>
        <property type="gene ID" value="SAMN05444003_1103"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00051">
        <property type="reaction ID" value="UER00449"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016765">
        <property type="term" value="F:transferase activity, transferring alkyl or aryl (other than methyl) groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071266">
        <property type="term" value="P:'de novo' L-methionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071268">
        <property type="term" value="P:homocysteine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019346">
        <property type="term" value="P:transsulfuration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00614">
        <property type="entry name" value="CGS_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02056">
        <property type="entry name" value="MetZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000277">
        <property type="entry name" value="Cys/Met-Metab_PyrdxlP-dep_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006234">
        <property type="entry name" value="O-succ-hSer_sulfhydrylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11808">
        <property type="entry name" value="PTHR11808"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01053">
        <property type="entry name" value="Cys_Met_Meta_PP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001434">
        <property type="entry name" value="CGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01325">
        <property type="entry name" value="O_suc_HS_sulf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="2" id="KW-0486">Methionine biosynthesis</keyword>
    <keyword evidence="2 3 4" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="2 3">
        <location>
            <position position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR001434-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU362118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG82541.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="389" mass="41607" checksum="AF06900F9AAC248D" modified="2017-03-15" version="1">MSNWNKRTKAVHSGTRRSQYNEVSEAIFMTQGFVYDTAEDAEARFLKAGDDEFIYARYGNPTVAMFEERIATMEGGEDAFATASGMAAVNGALTSMLKAGDHVVSSRALFGSCLYILEEILTRYGVEVTFVDGTNIEEWAAAIRSETKAVFFETVSNPTLEVIDTKSVAELAHAVGATVIVDNVFATPVFTTAFEDGADVVVYSATKHIDGQGRALGGVIIGTREFIRGTVEPYMKHTGGSMSPFHAWMMLKGLETIDLRVRAQAQSALAIAEALKGHDALTSVAYPGLADHPQNALMPDGGTVLALDLGDQTSAFKFLNALSIAVISNNLGDAKSIATHPATTTHQRLSEDQRGALGIGPGLVRFSVGLEDEDDLIADIQNALNVAKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MZB2</accession>
    <name>A0A1M5MZB2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Lrp/AsnC family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1085</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82103.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899817.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1085"/>
    <dbReference type="EnsemblBacteria" id="SHG82103">
        <property type="protein sequence ID" value="SHG82103"/>
        <property type="gene ID" value="SAMN05444003_1085"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000485">
        <property type="entry name" value="AsnC-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019888">
        <property type="entry name" value="Tscrpt_reg_AsnC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019887">
        <property type="entry name" value="Tscrpt_reg_AsnC/Lrp_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019885">
        <property type="entry name" value="Tscrpt_reg_HTH_AsnC-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01037">
        <property type="entry name" value="AsnC_trans_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00033">
        <property type="entry name" value="HTHASNC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00344">
        <property type="entry name" value="HTH_ASNC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00519">
        <property type="entry name" value="HTH_ASNC_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50956">
        <property type="entry name" value="HTH_ASNC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH asnC-type" evidence="4">
        <location>
            <begin position="2"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG82103.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="151" mass="17127" checksum="93294F3C06404937" modified="2017-03-15" version="1">MLDDISRSILRYLQNDPTLAIPELADRVNLTAAQATRRLDKLTEEGIIKGQEAQINWEALGFTVQVSLRITLDKTATRAFDEFQAAAREIAEVLEIQTFLGRVDVRLSLVARDLNHYQQVYREQILTLPHIADIEALMTVSEVKRAEVLPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N0H4</accession>
    <name>A0A1M5N0H4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Predicted metal-dependent hydrolase, TIM-barrel fold</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1122</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82997.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899848.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1122"/>
    <dbReference type="EnsemblBacteria" id="SHG82997">
        <property type="protein sequence ID" value="SHG82997"/>
        <property type="gene ID" value="SAMN05444003_1122"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04909">
        <property type="entry name" value="Amidohydro_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidohydro-rel" evidence="1">
        <location>
            <begin position="24"/>
            <end position="290"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG82997.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="290" mass="31409" checksum="AEB7E1C4F08B4477" modified="2017-03-15" version="1">MAKPIAPLPPAAQDVATKAPQDACDTHVHLLGAPKEFPLFDGRTEDPAQSFAAYLAGYRAHLDALGITRGVVVQSIFYGIDNSVTVEAVRQMGDGFKGIGLLPDGAPEAAFDQFADWNLSGVRLNYVHGGVLTWDGAKAMAPILNDRGMHIQMLMHADQHMEELAEDVAACPVPVVFDHIGWPTDIAGGSQTAGFQNLCRVLADGDAYIKLSGLYRLSNAPYDATDAFVAALVEANPERCLWGSDWPHIMLNGAEMPKGSDLWDAFHRAVTDEDTRHRILVDNPAALYKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N207</accession>
    <name>A0A1M5N207_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Riboflavin synthase alpha chain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1146</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83588.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899869.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1146"/>
    <dbReference type="EnsemblBacteria" id="SHG83588">
        <property type="protein sequence ID" value="SHG83588"/>
        <property type="gene ID" value="SAMN05444003_1146"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00402">
        <property type="entry name" value="Riboflavin_synthase_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023366">
        <property type="entry name" value="ATP_synth_asu-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001783">
        <property type="entry name" value="Lumazine-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026017">
        <property type="entry name" value="Lumazine-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21098">
        <property type="entry name" value="PTHR21098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00677">
        <property type="entry name" value="Lum_binding"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000498">
        <property type="entry name" value="Riboflavin_syn_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="SSF63380"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00187">
        <property type="entry name" value="ribE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51177">
        <property type="entry name" value="LUMAZINE_BIND"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="Lumazine-binding" evidence="2">
        <location>
            <begin position="1"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="domain" description="Lumazine-binding" evidence="3">
        <location>
            <begin position="1"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="repeat" description="Lumazine-binding" evidence="2">
        <location>
            <begin position="99"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="domain" description="Lumazine-binding" evidence="3">
        <location>
            <begin position="99"/>
            <end position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00524"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51177"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG83588.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="198" mass="21125" checksum="19F80E5992331E42" modified="2017-03-15" version="1">MFTGIITDIGTVLELEQRGDLRARIGTAYDVDGIDLGASIACDGVCLTVIALGREPQNWFDVEISAETVGATNVGEWEQGSLLNLERALKVGDELGGHIVSGHVDGVAEIVGVRDEGDSTRVTFRAPDGFAKFIAPKGSVALNGTSLTVNEVDGADFGINFIPHTKAETTWGDVAEGDRINLEIDTMARYVARLREYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N2B9</accession>
    <name>A0A1M5N2B9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Aminobenzoyl-glutamate utilization protein B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1152</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83714.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899875.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1152"/>
    <dbReference type="EnsemblBacteria" id="SHG83714">
        <property type="protein sequence ID" value="SHG83714"/>
        <property type="gene ID" value="SAMN05444003_1152"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG83714.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="522" mass="56624" checksum="BAAACD6AA5D1A0CA" modified="2017-03-15" version="1">MVFSDAQSSAVSYVHAQKQRLSVDCATIFDFGETAWREYRSAAWYVERLRAEGFTVEEGSGGMPTAFCAEWSNGDGPVVGMYAEYDAVPANCQAAMPEKAPREGLGFAAGGHTDPHSALGISGLGGLLATKAAMEQHGIKGGLRFTGEPAEKVRGSKPIHAAKGYYDGLAGMLSFHPFYMLPMCNTARWDTHCGAAYSMIYRFRCEKPEIWGATDSAPIPQSHSDVRAPGANDAMVAMYQANRYLRDTMLPHSGGWSISEAILSTGQATADNLPAQMADIQYMMRVPTIVMAEQVTAALDRNAEVVAQMTGCAVERHWVCKSRHGLANHAMASLVWDNIQAVGAPVWDDEALAIARQVQRACVQSGQDSPLIDECSSLISPQDAEAVLRQSLPPNQLNSTSDDYTDMTWHAPTARFYIARPALKGGPYPPWAMNALGGIPQTIDPMVQVAAKVLATSALRLLEDEVARDAAMTEFKDRTGGGIGGSKWVAPLCDYEPPINFAWPEYVETPRGRDWHIPSMPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N3F6</accession>
    <name>A0A1M5N3F6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1168</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84098.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899888.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1168"/>
    <dbReference type="EnsemblBacteria" id="SHG84098">
        <property type="protein sequence ID" value="SHG84098"/>
        <property type="gene ID" value="SAMN05444003_1168"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="69"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="73"/>
            <end position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG84098.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="90" mass="9726" checksum="C93DFC610B49867C" modified="2017-03-15" version="1">MRILETFALLACASCAPFPELDDTVDQEARDAPYPTLVNISALNAAIGPEPTLPLAEIESRLNELDASAEALRGPVVDDESRSRMEEGVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N4A6</accession>
    <name>A0A1M5N4A6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1157</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83833.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899878.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1157"/>
    <dbReference type="EnsemblBacteria" id="SHG83833">
        <property type="protein sequence ID" value="SHG83833"/>
        <property type="gene ID" value="SAMN05444003_1157"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018772">
        <property type="entry name" value="Transcription_activator_HlyU"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10115">
        <property type="entry name" value="HlyU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG83833.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="91" mass="10211" checksum="BCF853008137BCA6" modified="2017-03-15" version="1">MALFSKLFRGKSGSKEDAEPVVYEGYRIFAEPVKEGSSYRLAARIELDTESGMKTHDVIRADTFGSLEEATEWSVAKCKQLIDQMGERLFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N5P2</accession>
    <name>A0A1M5N5P2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ThuA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1200</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84821.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899915.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1200"/>
    <dbReference type="EnsemblBacteria" id="SHG84821">
        <property type="protein sequence ID" value="SHG84821"/>
        <property type="gene ID" value="SAMN05444003_1200"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029010">
        <property type="entry name" value="ThuA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06283">
        <property type="entry name" value="ThuA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ThuA" evidence="1">
        <location>
            <begin position="3"/>
            <end position="212"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF06283"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG84821.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="235" mass="25902" checksum="9E95D4BC95BAC790" modified="2017-03-15" version="1">MTKALITWGGWDGHQPDKVAAIFDKMLKAEGIDTEVVDHLDCFDDPDLGRYDLIVPIWTMSDLSRETTAKVGEVIARGTGLAGCHGGMCDAFRNSPLWQFITGANWVAHPGGDGVKHKVNIISDDPLVAGIDDFEVETEQYYLHVDPANTVLATTRTDAVTWYHSPNGAVDMPVAWTRQWGLGRVYYNSLGHQANVVESGPAYEMLRRGLVWSAQSKALAEGQDLTPWMAEGNHY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N716</accession>
    <name>A0A1M5N716_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1219</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG85245">
        <property type="protein sequence ID" value="SHG85245"/>
        <property type="gene ID" value="SAMN05444003_1219"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009912520" evidence="2">
        <location>
            <begin position="27"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="22"/>
            <end position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG85245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="41" mass="4002" checksum="D2E237564792B174" modified="2017-03-15" version="1">MATGTKAFVVAALMALVAVSASQGQARNTPTAEQGEGASAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N999</accession>
    <name>A0A1M5N999_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NADPH2:quinone reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1240</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85769.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899950.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1240"/>
    <dbReference type="EnsemblBacteria" id="SHG85769">
        <property type="protein sequence ID" value="SHG85769"/>
        <property type="gene ID" value="SAMN05444003_1240"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PKS_ER" evidence="1">
        <location>
            <begin position="11"/>
            <end position="317"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG85769.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="319" mass="33878" checksum="8BEF36C127D9CF6C" modified="2017-03-15" version="1">MKAYQVLDFDGHLELTDVPVPVPTDGQILIKTEACGLNFADLLMRKGTYQDTPEPPFTLGLEVCGTVEQLGPNAQGLEIGDRVAVFGGRGGLAEYGVFPAELCCKVGPDMPAEAAAGFQVAYGTSHLALTHRAKLKAGETLVVLGAAGGVGLTAVEVGKLLGATVIAFARGASKVETAKQAGADFAYDSDDVDIREVVKSHGGADVVYDPIGGDQFKSVLRACNREARVIIIGFASGDVPQIAANHILVKNITVIGFYWGGYLKFAPDVLRASLEELMNWYDEGKLKPHVSHVFPLERSKEALDILEARKSTGKVVVKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NC23</accession>
    <name>A0A1M5NC23_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">3-oxoacid CoA-transferase subunit B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1316</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the 3-oxoacid CoA-transferase subunit B family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87047.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900015.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1316"/>
    <dbReference type="EnsemblBacteria" id="SHG87047">
        <property type="protein sequence ID" value="SHG87047"/>
        <property type="gene ID" value="SAMN05444003_1316"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008410">
        <property type="term" value="F:CoA-transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012791">
        <property type="entry name" value="3-oxoacid_CoA-transf_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004165">
        <property type="entry name" value="CoA_trans_fam_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037171">
        <property type="entry name" value="NagB/RpiA_transferase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13707">
        <property type="entry name" value="PTHR13707"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01144">
        <property type="entry name" value="CoA_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00882">
        <property type="entry name" value="CoA_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100950">
        <property type="entry name" value="SSF100950"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02428">
        <property type="entry name" value="pcaJ_scoB_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG87047.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="208" mass="21987" checksum="E1F8B937F8AD8AAE" modified="2017-03-15" version="1">MAWDRNQMAARAAQELEDGTYVNLGIGIPTLVSNYIPEGVEVTLQSENGMLGMGPFPTEDEIDADLINAGKQTITELPQTAYFDSATSFGMIRGGKIAMAILGAMEVAENGDLANWMIPGKLVKGMGGAMDLVAGVGRVVVVMDHTNKHGESKLLKECTLPLTGKGVVDRIITNLGVLDVVEGGLKIVETAEGVTEEELRNATEAAIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NE15</accession>
    <name>A0A1M5NE15_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">4-hydroxy-tetrahydrodipicolinate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1358</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the DapA family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87760.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900049.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1358"/>
    <dbReference type="EnsemblBacteria" id="SHG87760">
        <property type="protein sequence ID" value="SHG87760"/>
        <property type="gene ID" value="SAMN05444003_1358"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002220">
        <property type="entry name" value="DapA-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12128">
        <property type="entry name" value="PTHR12128"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00701">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001365">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00146">
        <property type="entry name" value="DHPICSNTHASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01130">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR001365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG87760.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="293" mass="30098" checksum="88D1A1C5CCA3B4A2" modified="2017-03-15" version="1">MFKGLSAFPLTPASADGVVDTDALQQLTARLVPHPVTSIGLLGSTGTYAYLTRAERRRAVAAAVEVLAGKVPLIVGVGAMRTDEAVALAQDAAAEGADAVLMAPVSYTPLTQDEAFGHYRAVTAAAGLPMCVYNNPGTTHFTFSEALVQRLAEVDGIAAVKMPLPADGDFAGEIAQLGRDGFEIGYSADWGIANALLGGAGSFYSAVAGTLPKQVTALSSAALAGDEAAARAEDDKLAELWALCKARGSVRVMHAAATQIGLIDTPLPLPLLPLETGEQDALAVILEQIDATV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NGE9</accession>
    <name>A0A1M5NGE9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Histidine--tRNA ligase</fullName>
            <ecNumber evidence="9">6.1.1.21</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Histidyl-tRNA synthetase</fullName>
            <shortName evidence="9">HisRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">hisS</name>
        <name evidence="11" type="ORF">SAMN05444003_1403</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>ATP + L-histidine + tRNA(His) = AMP + diphosphate + H(+) + L-histidyl-tRNA(His)</text>
            <dbReference type="Rhea" id="RHEA:17313"/>
            <dbReference type="Rhea" id="RHEA-COMP:9665"/>
            <dbReference type="Rhea" id="RHEA-COMP:9689"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57595"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78527"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.21"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="3 9">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the class-II aminoacyl-tRNA synthetase family.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.21" evidence="9"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88590.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900091.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1403"/>
    <dbReference type="EnsemblBacteria" id="SHG88590">
        <property type="protein sequence ID" value="SHG88590"/>
        <property type="gene ID" value="SAMN05444003_1403"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004821">
        <property type="term" value="F:histidine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006427">
        <property type="term" value="P:histidyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00773">
        <property type="entry name" value="HisRS-like_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00859">
        <property type="entry name" value="HisRS_anticodon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.800">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00127">
        <property type="entry name" value="His_tRNA_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004154">
        <property type="entry name" value="Anticodon-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036621">
        <property type="entry name" value="Anticodon-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015807">
        <property type="entry name" value="His-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041715">
        <property type="entry name" value="HisRS-like_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004516">
        <property type="entry name" value="HisRS/HisZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033656">
        <property type="entry name" value="HisRS_anticodon"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03129">
        <property type="entry name" value="HGTP_anticodon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13393">
        <property type="entry name" value="tRNA-synt_His"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001549">
        <property type="entry name" value="His-tRNA_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00442">
        <property type="entry name" value="hisS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9 11" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="6 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7 9" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AA_TRNA_LIGASE_II" evidence="10">
        <location>
            <begin position="17"/>
            <end position="384"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG88590.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="497" mass="54449" checksum="A051DE659326D607" modified="2017-03-15" version="1">MAKVKKQPRPKAQTPKGFRDYFGAEVVQRTEMLSKIAGVYHHYGFEALESSAVETVEALGKFLPDVDRPNEGVFAWEEDNDWLALRYDLTAPLARVYAQFRNDLPTPYRRYAMGPVWRNEKTGPGRFRQFYQCDADTVGAPTVAADAEICAMLSDTLEVVGIPRGDYKISVNNRKVLNGVMEVAGVLDPSDPDKFASERGIVLRAIDKLDRLGTDGVRALLGEGRKDDSGDFTKGAGLSVEQAEIVMGFMDARRDTGAATVARLMELVTGSQTGTDGVNELETIATLLDAQGYGPDRIVIDPAVVRGLGYYTGPVYEAELTFEVQDEKGRPRNFGSVSGGGRYDNLVKRFTGQEVPATGVSIGVDRLLAALHAKGRLTKETTGPVIVTVMDRDRMADYQAIVAELRNAGIRSEVYLGNPKNFGNQLKYADKRNSPVAVIQGSDEADRSVVQIKDLILGAKIAESASPDEWKDRPQQFEVARSDMVAKIREILDGQDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NGP5</accession>
    <name>A0A1M5NGP5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DNA-directed DNA polymerase</fullName>
            <ecNumber evidence="1">2.7.7.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_1405</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)</text>
            <dbReference type="Rhea" id="RHEA:22508"/>
            <dbReference type="Rhea" id="RHEA-COMP:17339"/>
            <dbReference type="Rhea" id="RHEA-COMP:17340"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:173112"/>
            <dbReference type="EC" id="2.7.7.7"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.7.7" evidence="1"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88627.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900461.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1405"/>
    <dbReference type="EnsemblBacteria" id="SHG88627">
        <property type="protein sequence ID" value="SHG88627"/>
        <property type="gene ID" value="SAMN05444003_1405"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008408">
        <property type="term" value="F:3'-5' exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.1600">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011708">
        <property type="entry name" value="DNA_pol3_alpha_NTPase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041931">
        <property type="entry name" value="DNA_pol3_alpha_thumb_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040982">
        <property type="entry name" value="DNA_pol3_finger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029460">
        <property type="entry name" value="DNAPol_HHH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004013">
        <property type="entry name" value="PHP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003141">
        <property type="entry name" value="Pol/His_phosphatase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016195">
        <property type="entry name" value="Pol/histidinol_Pase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004805">
        <property type="entry name" value="PolC_alpha"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32294">
        <property type="entry name" value="PTHR32294"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07733">
        <property type="entry name" value="DNA_pol3_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17657">
        <property type="entry name" value="DNA_pol3_finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14579">
        <property type="entry name" value="HHH_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02811">
        <property type="entry name" value="PHP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00481">
        <property type="entry name" value="POLIIIAc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89550">
        <property type="entry name" value="SSF89550"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00594">
        <property type="entry name" value="polc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0235">DNA replication</keyword>
    <keyword evidence="5" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="POLIIIAc" evidence="7">
        <location>
            <begin position="7"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00024632"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG88627.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="1165" mass="128957" checksum="968FA3D74CE88A2E" modified="2017-03-15" version="1">MSDPRFIHLRLHTEYSLLEGAVPVKKLAGLCASADMPAVAITDSNNMFAALEFSEYAAGAGVQPIIGCQVDLTYLPTEPGKRAPDPAAVVLLAQNETGYMNLMKLNSCAYLDAEGQLPQVTVDELAQHHEGIICLSGGPDGPIGRLLQQSQRAKAETLLDRLATIYPDRLYVELQRHPGEGGQPEAERLSERGTIEMAYAKNLPLVATNDVYFPKTDLYEAHDALICIAEGAYVDQQESRRRLTAQHYFKSQQEMVTLFADLPEAIENTIEIAKRCAFKAYKRDPILPKFADDEVAELRRQAQEGLKYRLSIIEHAAPVEEYEKRLDFELGIIEGMGFPGYFLIVADFIKWAKDHDIPVGPGRGSGAGSLVAYALLITDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLSKMIPVEGVKPVSIEKALADEPRLREEAKAEEVVDRLLTYAQQVEGLLRNASTHAAGVVIGDRPLDELVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDLILKSGRDLHVTADGTELFQPPEGAINDIGAIPLDDEKSYALYSAAKTIAVFQVESSGMMDALKRMKPTCIEDIVALVALYRPGPMENIPTYCEVKNGQKELESIHPLIDHILKETQGIIVYQEQVMEIAQVMAGYSLGGADLLRRAMGKKIKEAMDAERPKFEAGAKENGVEPKKAREVFDLLEKFANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDLHLTDKLGVYFQEVKKGLGIDYIPPCVNRSEATFDVQDQKLVYALGALKNVGVEAMKLITEARGDKEFVNLFDFARRVDLRRVGKRPLEMMARAGAFDILDPNRRRVMMSLDALSAYSAAIFDQKASNQVSLFGEAGDDLPEPRLMGGDDWLPAERLAEEFKAIGFYLSGHPLDDYMASLKRKQVLTLDDVTAKAERGACIVKMAGTVSGRQERKSARGNRFAFVQLSDPTGQYEVTMFSDTLEAAREHLDTGSQVVIQAEATMEADQLKLLGRSVSPIDIAVTDVSNAGLRLYLEEPTAIQSVATILENAIRDGVKGGRGPIYFCLMNDDLPGEVEIDLGDDFPVNPQIKGALRSLGGVIEVEEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NHC3</accession>
    <name>A0A1M5NHC3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Deoxyuridine 5'-triphosphate nucleotidohydrolase</fullName>
            <shortName evidence="4">dUTPase</shortName>
            <ecNumber evidence="4">3.6.1.23</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">dUTP pyrophosphatase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">dut</name>
        <name evidence="6" type="ORF">SAMN05444003_1422</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 4">
            <text>dUTP + H2O = diphosphate + dUMP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:10248"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61555"/>
            <dbReference type="ChEBI" id="CHEBI:246422"/>
            <dbReference type="EC" id="3.6.1.23"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="4">Pyrimidine metabolism; dUMP biosynthesis; dUMP from dCTP (dUTP route): step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the dUTPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.23" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88976.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900108.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1422"/>
    <dbReference type="EnsemblBacteria" id="SHG88976">
        <property type="protein sequence ID" value="SHG88976"/>
        <property type="gene ID" value="SAMN05444003_1422"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00610">
        <property type="reaction ID" value="UER00666"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004170">
        <property type="term" value="F:dUTP diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006226">
        <property type="term" value="P:dUMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046081">
        <property type="term" value="P:dUTP catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07557">
        <property type="entry name" value="trimeric_dUTPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00116">
        <property type="entry name" value="dUTPase_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008181">
        <property type="entry name" value="dUTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029054">
        <property type="entry name" value="dUTPase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036157">
        <property type="entry name" value="dUTPase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033704">
        <property type="entry name" value="dUTPase_trimeric"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11241">
        <property type="entry name" value="PTHR11241"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00692">
        <property type="entry name" value="dUTPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51283">
        <property type="entry name" value="SSF51283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00576">
        <property type="entry name" value="dut"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 4" id="KW-0546">Nucleotide metabolism</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="dUTPase" evidence="5">
        <location>
            <begin position="20"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="4">
        <location>
            <begin position="75"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="4">
        <location>
            <begin position="92"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="88"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG88976.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="157" mass="16456" checksum="736CA2A5908823B4" modified="2017-03-15" version="1">MNSPLIELCWEEWADPTLALPSYETAGAAGADIRANFRVEDRGAGKTIAAGERALIPTGLSMAIPEGFEVQIRPRSGLALKNGVALVNAPGTIDSDYRGSVGIILINLGSDPFEITHGMRIAQMVVAPAIQSSFILVDKLNSTDRGRGGFGSTGTDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NKU4</accession>
    <name>A0A1M5NKU4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Succinate--CoA ligase [ADP-forming] subunit alpha</fullName>
            <ecNumber evidence="2">6.2.1.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Succinyl-CoA synthetase subunit alpha</fullName>
            <shortName evidence="2">SCS-alpha</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">sucD</name>
        <name evidence="7" type="ORF">SAMN05444003_1478</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 5">Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 5">
            <text>ATP + CoA + succinate = ADP + phosphate + succinyl-CoA</text>
            <dbReference type="Rhea" id="RHEA:17661"/>
            <dbReference type="ChEBI" id="CHEBI:30031"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57292"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.2.1.5"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 5">Carbohydrate metabolism; tricarboxylic acid cycle; succinate from succinyl-CoA (ligase route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2 5">Heterotetramer of two alpha and two beta subunits.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the succinate/malate CoA ligase alpha subunit family.</text>
    </comment>
    <dbReference type="EC" id="6.2.1.5" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90234.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900157.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1478"/>
    <dbReference type="EnsemblBacteria" id="SHG90234">
        <property type="protein sequence ID" value="SHG90234"/>
        <property type="gene ID" value="SAMN05444003_1478"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00223">
        <property type="reaction ID" value="UER00999"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004775">
        <property type="term" value="F:succinate-CoA ligase (ADP-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.261">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01988">
        <property type="entry name" value="Succ_CoA_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017440">
        <property type="entry name" value="Cit_synth/succinyl-CoA_lig_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033847">
        <property type="entry name" value="Citrt_syn/SCS-alpha_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003781">
        <property type="entry name" value="CoA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005810">
        <property type="entry name" value="CoA_lig_alpha"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005811">
        <property type="entry name" value="CoA_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016102">
        <property type="entry name" value="Succinyl-CoA_synth-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02629">
        <property type="entry name" value="CoA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00549">
        <property type="entry name" value="Ligase_CoA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001553">
        <property type="entry name" value="SucCS_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00881">
        <property type="entry name" value="CoA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52210">
        <property type="entry name" value="SSF52210"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01019">
        <property type="entry name" value="sucCoAalpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01216">
        <property type="entry name" value="SUCCINYL_COA_LIG_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00399">
        <property type="entry name" value="SUCCINYL_COA_LIG_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0436">Ligase</keyword>
    <keyword evidence="1 2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="domain" description="CoA_binding" evidence="6">
        <location>
            <begin position="4"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="region of interest" description="Coenzyme A binding" evidence="2">
        <location>
            <begin position="17"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="region of interest" description="Coenzyme A binding" evidence="2">
        <location>
            <begin position="96"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="active site" description="Tele-phosphohistidine intermediate" evidence="2 3">
        <location>
            <position position="251"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="43"/>
        </location>
        <ligand>
            <name>CoA</name>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="159"/>
        </location>
        <ligand>
            <name>substrate</name>
            <note>ligand shared with subunit beta</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01988"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR001553-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU000677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG90234.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="294" mass="30368" checksum="A883A906638EF0E9" modified="2017-03-15" version="1">MAILVDENTKVICQGLTGSQGTFHTEQAIAYGTKMVGGVTPGKGGQTHLDLPVFNSVHEAKHVTEANASVIYVPPPFAADSILEAIDAEMELIICITEGIPVLDMMSVKKALEGSSSRLIGPNCPGIITPDACKIGIMPGHIHKRGSVGVVSRSGTLTYEAVKQTADSGLGQSTAVGIGGDPIKGTEHIDVLDMFLDDDETQSIIMIGEIGGTAEEEAAEFLTEQSKKGRWKPVAGFIAGRTAPPGRRMGHAGAIVAGGKGDAESKIEAMKSAGIVVADSPATLGEAVLEAIAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NMP5</accession>
    <name>A0A1M5NMP5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1505</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90826.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900179.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1505"/>
    <dbReference type="EnsemblBacteria" id="SHG90826">
        <property type="protein sequence ID" value="SHG90826"/>
        <property type="gene ID" value="SAMN05444003_1505"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016810">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019700">
        <property type="term" value="P:organic phosphonate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011059">
        <property type="entry name" value="Metal-dep_hydrolase_composite"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012696">
        <property type="entry name" value="PhnM"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF038971">
        <property type="entry name" value="PhnM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51338">
        <property type="entry name" value="SSF51338"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02318">
        <property type="entry name" value="phosphono_phnM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG90826.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="398" mass="42767" checksum="A7C67411045497F1" modified="2017-03-15" version="1">MNSPFSAASFTKTYDNGATSDLWLANAQLILPDQVLKGSVTIEQGVITEISEGDHVPEGATDCQGDFVLPGLVELHTDNVERHIEPRPEVDWPHLPALIAHDAELASTGITTVFDAMRVGSIHSGKKGRYVDYARKLADELLAARAEGLFKISHFLHLRAEICSETLMDELAAFSADDRVGIVSLMDHTPGQRQFRDLTALRTYVAKKRGMNEAEFAEHVENLLALQKKFGAAHEAGAVKEARRLGAVLASHDDTTAEQVVTSSANGVGFAEFPTTFEAAKACREQGIAVMMGAPNLIRGGSHSGNVAAEELAKADLLDIVSSDYVPSALLLSAFYLAELWSDLPRAVATVTCNPATAAGLRDRGRLDIGQRGDVLRVRKTSKAPVLCGAWSQGKQVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NPK5</accession>
    <name>A0A1M5NPK5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Xanthine dehydrogenase, molybdenum binding subunit apoprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1528</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900202.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1528"/>
    <dbReference type="EnsemblBacteria" id="SHG91375">
        <property type="protein sequence ID" value="SHG91375"/>
        <property type="gene ID" value="SAMN05444003_1528"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000674">
        <property type="entry name" value="Ald_Oxase/Xan_DH_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036856">
        <property type="entry name" value="Ald_Oxase/Xan_DH_a/b_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016208">
        <property type="entry name" value="Ald_Oxase/xanthine_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008274">
        <property type="entry name" value="AldOxase/xan_DH_Mopterin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037165">
        <property type="entry name" value="AldOxase/xan_DH_Mopterin-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11908">
        <property type="entry name" value="PTHR11908"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01315">
        <property type="entry name" value="Ald_Xan_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02738">
        <property type="entry name" value="Ald_Xan_dh_C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01008">
        <property type="entry name" value="Ald_Xan_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54665">
        <property type="entry name" value="SSF54665"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56003">
        <property type="entry name" value="SSF56003"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ald_Xan_dh_C" evidence="1">
        <location>
            <begin position="29"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG91375.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="753" mass="79427" checksum="60E0860F9623E27B" modified="2017-03-15" version="1">MSFDATFQNKRFNSVGTRPLRPDGIDKVTGRARYGADFNMPGQLVARVLRSPHAHARIKGIDTSKAEAVKGVKAIVTAADMPDLTDGDEALFAILDNCMAREKAMYDGHAVAAVAAIDESSAKAALKLIKVDYEVLPHVVDVDAAMMADAPVLNDTIFTQGVEPAPSKPSNVANRSEFGHGDVDAGFAKADIIVERSYKTEQAHQGYIEPHACVASCNADGTADLWVCTQGHFVYRQNCADLLGLEASKLRVTSSEIGGGFGGKTHVWAEPVALALSRKAGRPVKLIMSREEVFRASGPTSATSIDVKIGATKDGKITAAEATLRYTSGPYPDMWAELGAMTAFAPYDLENVKTVGFEVVVNRPKVAAYRAPSAPMAAFAAESAVDELAKEIGMDPVDFRIANVAKEGTRSSYGPVYGPIGIGPTLDAAKAHPHMSAPLGPNQGRGMACGFWFNFGGQTCTDLNISADGTVTIAVGTVDVGGSRASLSLIVAEELGIEYSDVKAVIADTSTLGYNDMTDGSRGTFSTSMATISAARNAIEVMRQRAAIMWDIPLEHIYWEDGHAKAAGSKHGNRAPLSVKDIAAEAGNTGGPIAGHSELVADGAGVSFATHICDIEVDSETGSSRVVRYTVIQDAGKAVHPAYVEGQYQGGAAQGIGWALNEEYIYGDDGRLQNPGFLDYRIPVCSDLPMIDTQILEIPNPNHPYGVRGVGETSIVPPLAAIANAVSNAVGLRMSHIPLSPPRILAALNAAKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NSS3</accession>
    <name>A0A1M5NSS3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1555</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG92013.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900224.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1555"/>
    <dbReference type="EnsemblBacteria" id="SHG92013">
        <property type="protein sequence ID" value="SHG92013"/>
        <property type="gene ID" value="SAMN05444003_1555"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.280.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007420">
        <property type="entry name" value="DUF465"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038444">
        <property type="entry name" value="DUF465_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04325">
        <property type="entry name" value="DUF465"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="10"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG92013.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="72" mass="8395" checksum="83030401483628E9" modified="2017-03-15" version="1">MNSSSEMDPIEVLRVKLEVLRRQHRDLDDAIEALQERRSADMLTLRRLKKQKLGLKDQIAVLEDRITPDIIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NTX7</accession>
    <name>A0A1M5NTX7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="10">ATP-dependent Clp protease ATP-binding subunit ClpA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_1589</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the ClpA/ClpB family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG92895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900257.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1589"/>
    <dbReference type="EnsemblBacteria" id="SHG92895">
        <property type="protein sequence ID" value="SHG92895"/>
        <property type="gene ID" value="SAMN05444003_1589"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043335">
        <property type="term" value="P:protein unfolding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1780.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019489">
        <property type="entry name" value="Clp_ATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036628">
        <property type="entry name" value="Clp_N_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004176">
        <property type="entry name" value="Clp_R_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013461">
        <property type="entry name" value="ClpA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001270">
        <property type="entry name" value="ClpA/B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018368">
        <property type="entry name" value="ClpA/B_CS1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028299">
        <property type="entry name" value="ClpA/B_CS2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041546">
        <property type="entry name" value="ClpA/ClpB_AAA_lid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07724">
        <property type="entry name" value="AAA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17871">
        <property type="entry name" value="AAA_lid_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02861">
        <property type="entry name" value="Clp_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10431">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00300">
        <property type="entry name" value="CLPPROTEASEA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM01086">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81923">
        <property type="entry name" value="SSF81923"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02639">
        <property type="entry name" value="ClpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51903">
        <property type="entry name" value="CLP_R"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00870">
        <property type="entry name" value="CLPAB_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00871">
        <property type="entry name" value="CLPAB_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0143">Chaperone</keyword>
    <keyword evidence="10" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-0645">Protease</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Clp R" evidence="9">
        <location>
            <begin position="1"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="754"/>
            <end position="775"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008675"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU004432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG92895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="775" mass="84852" checksum="A5EA030BB5404EA6" modified="2017-03-15" version="1">MPSFSTTLEQSIHGALALANARKHELATLEHLLLALIDEPDAARVMQACSVDLDALRKDLEDFIEDDLSTLETDVEGSEAVPTAAFQRVIQRAAIHVQSSGRTEVTGANVLVAIFAERESNAAYFLQEQDMTRYDAVNFIAHGVAKDPAFGETRPIQGAADENTETIQDDSVEEKESALAKYCVDLNAKASQGDVDPLIGRAHEVERCIQVLCRRRKNNPLLVGDPGVGKTAIAEGLAFKITNGETPEVLANTTIYSLDMGALLAGTRYRGDFEERLKAVMTEMEDHDNAVLFIDEIHTVIGAGATSGGAMDASNLLKPALQGGKLRCMGSTTYKEFRQHFEKDRALSRRFQKIDVNEPSVEDAVKILRGLKPYFEEHHSIKYTADAIKTAVDLSARYINDRKLPDKAIDVIDEAGAAQHLVAESKRRKTIGTKEIEAVVAKIARIPPKNVSKDDAEVLKDLEQSLKRVVFGQDTAIEALSSAIKLARAGLREPEKPIGNYLFAGPTGVGKTEVAKQLADTLGVELMRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVDQNPHCVLLLDEIEKAHPDVYNILLQVMDHGKLTDHNGRTTDFRNVILIMTSNAGAAELNKNALGFGRESRAGEDTAAIERTFTPEFRNRLDAVISFGALPKEVILQVVEKFVLQLEAQLIDRNVHIELTPKAAEWLADKGYDDKMGARPLGRVIQEHIKKPLAEELLFGKLVKGGLVKVGVKKGELDLQIEEPEQGKLPDSGKKPPLLPAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NUD7</accession>
    <name>A0A1M5NUD7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Peptide/nickel transport system ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1600</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93176.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1600"/>
    <dbReference type="EnsemblBacteria" id="SHG93176">
        <property type="protein sequence ID" value="SHG93176"/>
        <property type="gene ID" value="SAMN05444003_1600"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015833">
        <property type="term" value="P:peptide transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013563">
        <property type="entry name" value="Oligopep_ABC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08352">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01727">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="6">
        <location>
            <begin position="6"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="6">
        <location>
            <begin position="279"/>
            <end position="529"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="40"/>
            <end position="47"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="321"/>
            <end position="328"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG93176.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="607" mass="66862" checksum="13B80E060FDA9F52" modified="2017-03-15" version="1">MALLDVKNLSITFETPDGDVEAVKGINLSIEPGECLGIVGESGSGKSQTMMAIMGLLAKNGAATGSATFNGQEMLNVSVAEANKVRGADVAMIFQDPLTSLTPHLTVGQQMREVLDVHRNLSGAEAKKLCLDWLERVRIPEAKHRIDQYPHQLSGGMRQRVMIAMAMLCSPKLLIADEPTTALDVTVQAEILDLMANLQKEENTAIALITHDMGVVARMCDRVAVMRHGEYVEEGQIDALFHNPQHPYTRMLLDAMPRIDRPHEAAEVTLTQSENILNVKDMNVKFDIRVAGGLFGKKLPLRAVDGISFDLARGETLGIVGESGCGKSTLARAVLQLVPPTTGSVLWMGRETAGLDRQAMKPLRKDLQIVLQDPLASLNPRMTIAASIAEPLKTFQAELSSNERMHKVAEMMERVGLDRNMINRYPHELSGGQNQRVGIARAMINRPELVICDEAVSALDVSIQAQIVALLKEFQTDMGLSMMFISHDLSVVRDISHRIMVLYLGRVVELADRDTIYTNPIHPYTKSLISAVPIPDPRIERTRPRIQLPGELPSPLDPGAGLRFLPSKRHCDPNYRPQLNEVAPGHWVAEHDSLEEIMETEARQLAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NVE2</accession>
    <name>A0A1M5NVE2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Cytochrome b561</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1611</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93425.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900276.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1611"/>
    <dbReference type="EnsemblBacteria" id="SHG93425">
        <property type="protein sequence ID" value="SHG93425"/>
        <property type="gene ID" value="SAMN05444003_1611"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022904">
        <property type="term" value="P:respiratory electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011577">
        <property type="entry name" value="Cyt_b561_bac/Ni-Hgenase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016174">
        <property type="entry name" value="Di-haem_cyt_TM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01292">
        <property type="entry name" value="Ni_hydr_CYTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81342">
        <property type="entry name" value="SSF81342"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="39"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="79"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="134"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="domain" description="Ni_hydr_CYTB" evidence="4">
        <location>
            <begin position="6"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01292"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG93425.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="174" mass="19272" checksum="3DD77989FF8F4957" modified="2017-03-15" version="1">MNETSYTGAQKALHWIVAALVAAMALTGLAYVYEWADDSIIVAHQVIGQILIIVLVIRISVRIRKGKPLRGHHPRWERVLASSTQVGLYLVMIAFVITGYFAASALRQNALILPIDIGLARSDLGERMLEVHYAIKWVLAGLIFLHVAGALKHVFLDKDDTLSSILPSKHKDIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NWL7</accession>
    <name>A0A1M5NWL7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Deoxyribodipyrimidine photolyase-related protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1631</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1631"/>
    <dbReference type="EnsemblBacteria" id="SHG93902">
        <property type="protein sequence ID" value="SHG93902"/>
        <property type="gene ID" value="SAMN05444003_1631"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036134">
        <property type="entry name" value="Crypto/Photolyase_FAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007357">
        <property type="entry name" value="PhrB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04244">
        <property type="entry name" value="DPRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48173">
        <property type="entry name" value="SSF48173"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0456">Lyase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG93902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="507" mass="57353" checksum="74D0C3EED82B4B05" modified="2017-03-15" version="1">MRLVLVLGDQLSPNLSALRSADKATDVIIMAEALGEASYVRHHPKKIALIFAAMRKFAAQLRAEGWQVRYSKLDDEDAPQTLNEALLQGAEAVGATEVICTEAGEWRVIDALAELPLTVTTLPDDRFLSSNQEFESWAEGRKQLRMEYFYRDMRRKTGLLMEGDQPAGGQWNYDHDNRKAPPKSVEVEGPLRFEPDAVMREVLDLVAARFGENFGTLEPFWFATDAKQAQAHLDHWIATGLAGFGDYQDAMLLGQPHLYHAHIGLYLNIGLLDPLEVCQAVEKAWKEELAPLNAVEGFIRQVIGWREYIRGIYFLQGRDYVARNDLGHSRDLPASFWGQKTWMACIEAAVGQTRDEAYAHHIQRLMITGNFALLAGIDPYQVHEWYLAVYADAFEWVEAPNVIGMSQFADGGIVASKPYVSSGNYIDKMSNYCKSCSYKVKQKTGPDACPFNLLYWHFLDRHSEKFSANPRMGNMYRVWDRMAEDRRAQVLSDADNWLAKLDAGEVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NXK1</accession>
    <name>A0A1M5NXK1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1652</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG94314.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900310.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1652"/>
    <dbReference type="EnsemblBacteria" id="SHG94314">
        <property type="protein sequence ID" value="SHG94314"/>
        <property type="gene ID" value="SAMN05444003_1652"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00610">
        <property type="entry name" value="OAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005814">
        <property type="entry name" value="Aminotrans_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00202">
        <property type="entry name" value="Aminotran_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00600">
        <property type="entry name" value="AA_TRANSFER_CLASS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG94314.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="439" mass="47552" checksum="59C09692987C89FD" modified="2017-03-15" version="1">MTHVFPRHAKAKLPVAVRGDGVYLFDSEGNSYLDGSGGAAVSCLGHNDPDIIVAIKNQVDSLDFAHTGFMTSEAAEALATRLALHAPEGIDRVYLVSGGSEAVEAALKLARQYMIEIGQSQRTRFIARRQSYHGNTLGALGTGGNIWRRDPFDPIMVSASHIAPCYEYRDRTSVETAEDYGNRVANELEAELLRLGPENVIGFLAEPVVGATAGAVPPVAGYFRRIREICDKYEVLLILDEVMCGMGRTGTFFACEQDGVRPDIVTIAKGLGAGYQPIGAMLCSQDIYDAIAEGSGFFQHGHTYLGHPVACAAANAVVKKLIEGGLTARSDKMGQYLERALFDTFGQHPHVGDIRGRGMFRGLEFVADRDTKAPFDPEKQLAARLKRKAMENGLICYPMSGTIDGQYGDHVLLAPPFIATELQLDELVDKLSKSLKAVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PLU9</accession>
    <name>A0A1M5PLU9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Cytidylate kinase</fullName>
            <shortName evidence="8">CK</shortName>
            <ecNumber evidence="8">2.7.4.25</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Cytidine monophosphate kinase</fullName>
            <shortName evidence="8">CMP kinase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">cmk</name>
        <name evidence="10" type="ORF">SAMN05444003_1694</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>ATP + CMP = ADP + CDP</text>
            <dbReference type="Rhea" id="RHEA:11600"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58069"/>
            <dbReference type="ChEBI" id="CHEBI:60377"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.25"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 8">
            <text>ATP + dCMP = ADP + dCDP</text>
            <dbReference type="Rhea" id="RHEA:25094"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57566"/>
            <dbReference type="ChEBI" id="CHEBI:58593"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.25"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the cytidylate kinase family. Type 1 subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.25" evidence="8"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02233.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900510.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1694"/>
    <dbReference type="EnsemblBacteria" id="SHH02233">
        <property type="protein sequence ID" value="SHH02233"/>
        <property type="gene ID" value="SAMN05444003_1694"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036430">
        <property type="term" value="F:CMP kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036431">
        <property type="term" value="F:dCMP kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006220">
        <property type="term" value="P:pyrimidine nucleotide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02020">
        <property type="entry name" value="CMPK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00238">
        <property type="entry name" value="Cytidyl_kinase_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003136">
        <property type="entry name" value="Cytidylate_kin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011994">
        <property type="entry name" value="Cytidylate_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02224">
        <property type="entry name" value="Cytidylate_kin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00017">
        <property type="entry name" value="cmk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 8 10" id="KW-0418">Kinase</keyword>
    <keyword evidence="5 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Cytidylate_kin" evidence="9">
        <location>
            <begin position="5"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="domain" description="Cytidylate_kin" evidence="9">
        <location>
            <begin position="58"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="9"/>
            <end position="17"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001115"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009427"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00238"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH02233.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="203" mass="21235" checksum="60A7B2B139ABF414" modified="2017-03-15" version="1">MSFTVAIDGPAAAGKGTVSKAVAAHFGFAHLDTGLLYRAVGAKTLASAHAVDAAKSLVPKDLENPELRTQTVAKAASDVAKIPEVRAALVAFQQSFAKRDGGAVLDGRDIGTVICPDAEAKLFVTASPEVRAQRRYSELLQRGAEVTLEGVLADVQARDKQDRERETAPLVAADDAILIDTSELSIEDAIAAAIAAIETKRST</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PMQ0</accession>
    <name>A0A1M5PMQ0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">EamA-like transporter family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1734</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03001.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900544.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1734"/>
    <dbReference type="EnsemblBacteria" id="SHH03001">
        <property type="protein sequence ID" value="SHH03001"/>
        <property type="gene ID" value="SAMN05444003_1734"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="48"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="76"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="102"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="130"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="154"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="184"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="211"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="251"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="17"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH03001.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="288" mass="30121" checksum="8BF24C8FCC4ACA56" modified="2017-03-15" version="1">MTHITSISRDGRLIGPLFMIMAGALFAGANTAVQAAGMTYGVPSPTTAFWQYAIATVFAVPMLLRSSWQTDQLGWHLFRVLLAVFGVQAWVAGLAVVPIWQAIALLMLSPIFVSLGAKIFLGEHLGNGRLLAVCLGAVGGAIILKPWADGFSPHAFLSVAAAAFWAGSSLVTKRLTTTESTEVLTVYLLALLLPFNAFAALGSGFALGPDAFGIVGLAGLFTVAAQFCLAKAYSLSDAAYLQPFDHLKLPLNVGLGLLVFGFAPPGSMWIGAAIIVASGAWLVHTDNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PPH6</accession>
    <name>A0A1M5PPH6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">FAD/FMN-containing dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1762</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03580.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900567.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1762"/>
    <dbReference type="EnsemblBacteria" id="SHH03580">
        <property type="protein sequence ID" value="SHH03580"/>
        <property type="gene ID" value="SAMN05444003_1762"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.45.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.43.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016166">
        <property type="entry name" value="FAD-bd_PCMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016167">
        <property type="entry name" value="FAD-bd_PCMH_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016164">
        <property type="entry name" value="FAD-linked_Oxase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004113">
        <property type="entry name" value="FAD-linked_oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006094">
        <property type="entry name" value="Oxid_FAD_bind_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016171">
        <property type="entry name" value="Vanillyl_alc_oxidase_C-sub2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02913">
        <property type="entry name" value="FAD-oxidase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01565">
        <property type="entry name" value="FAD_binding_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55103">
        <property type="entry name" value="SSF55103"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51387">
        <property type="entry name" value="FAD_PCMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0274">FAD</keyword>
    <keyword evidence="1" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding PCMH-type" evidence="2">
        <location>
            <begin position="33"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH03580.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="468" mass="50275" checksum="6873A57A76294BD9" modified="2017-03-15" version="1">MTHQDALADIVGKKFAVSGADAANWQKEWTGDYTVDPLVVVRPATTEEVSKIAAYANANDLTVVPVSGNTGLTGATSNQGAVMLSVDRLNTIEQIDTEGRTITVGAGTILQSIHDAVDPHNLIFPLTFGAKGTAMIGGALSTNAGGSNVLRYGNTRDLCLGLEVVLADGHVMNLMSALHKDNSGYNLKHLMIGAEGTLGIITRAVLRLYSKPKAYATAMVATPTVSDALSLLYRMQDATGGAVEAFELMTRSYIDLHLRQVEGAKEPFDTAYDTNIMIEVGATSDEDAAVLDTGQTRIIEKLETILGGMLEEEAVIDAVIAQNEAQRREMWARREAAGHIGYAEGPRVDTDIAVPLDKVGFAIEEIERRYKELDPEAWDIVVAHLGDGNIHHAIYSEIVSKEFFDKCVETVEDVVQEIGGSFSAEHGVGLSKLKTMSRRKDPVALAAMRSIKDSLDPKGTLNPGKVIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PUU2</accession>
    <name>A0A1M5PUU2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">VPLPA-CTERM protein sorting domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1855</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05442.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900647.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1855"/>
    <dbReference type="EnsemblBacteria" id="SHH05442">
        <property type="protein sequence ID" value="SHH05442"/>
        <property type="gene ID" value="SAMN05444003_1855"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022472">
        <property type="entry name" value="VPLPA-CTERM"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03370">
        <property type="entry name" value="VPLPA-CTERM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH05442.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="284" mass="29784" checksum="852A8FD1265C88DB" modified="2017-03-15" version="1">MSKGVIYSVLTANLGKLLSNKRNCVVHVVFSKSLKSGLFGAAFIISSGAASAATININDVTAYWSSATLEYADSEGETQADGVGTNRISWGEEFKDGGQSAYIVNGVDGVVGLAPETEFVLGTFTHENRPILRPTLETAILMVEIDVDGAGIIEASFEFTHTETLNSADPCQFANDDNLTNGVGVNVNGCADQVEATVQLTSSPTVMIGGLEYFLNIVGFQIGDTPFSTFLTQENGDTTGDLIASFDPKISSPPPPVPTPASGLLLLSAFGAAAYVKRRKAKAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PX39</accession>
    <name>A0A1M5PX39_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ribosomal protein S18 acetylase RimI</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1894</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06212.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900680.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1894"/>
    <dbReference type="EnsemblBacteria" id="SHH06212">
        <property type="protein sequence ID" value="SHH06212"/>
        <property type="gene ID" value="SAMN05444003_1894"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2" id="KW-0689">Ribosomal protein</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="193"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH06212.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="207" mass="22773" checksum="7BE2BCB883026F58" modified="2017-03-15" version="1">MQIRAGFDAKDQRRAAELYWDAFGGKLGRVLGPRTKALAFFERVIRADHAISAYTEDGTLLGIAGFKTPKGALADGSFRDMRAVYGLLGASWRVGLIALLERDVENKSFLMDGIFVSDESRGQGVGTQLLDAVRREAERRGYRSVRLDVIDTNPRAKALYLRNGFVEKGTQELGPLRHIFGFKSAARMVAPVKPEANLAKSEPSGLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q191</accession>
    <name>A0A1M5Q191_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Polysaccharide export outer membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1978</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1978"/>
    <dbReference type="EnsemblBacteria" id="SHH07808">
        <property type="protein sequence ID" value="SHH07808"/>
        <property type="gene ID" value="SAMN05444003_1978"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015159">
        <property type="term" value="F:polysaccharide transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003715">
        <property type="entry name" value="Poly_export"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019554">
        <property type="entry name" value="Soluble_ligand-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02563">
        <property type="entry name" value="Poly_export"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10531">
        <property type="entry name" value="SLBB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012138324" evidence="2">
        <location>
            <begin position="23"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="domain" description="SLBB" evidence="3">
        <location>
            <begin position="121"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF10531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH07808.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="205" mass="21627" checksum="A833E4EA80BA0A7F" modified="2017-03-15" version="1">MKLMKYIAAVVALVMTATLSMAQSEYRVKSGDTLAVEVLQDPALNRQVLVLNDGRFSFPFAGTLTARGRTIGQIEAAISDAIADNFNAAPDVFVTVTPAIRPGSSSGSASAAPATINIFFVGEVGAPGPKALPAGSTILQALSTSGGFTNFAATKRVQLRRTDSNGLQSVYEINYEALENGAQMRSDVALQDGDVILVPERRLFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q2T8</accession>
    <name>A0A1M5Q2T8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1994</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08039.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH08039">
        <property type="protein sequence ID" value="SHH08039"/>
        <property type="gene ID" value="SAMN05444003_1994"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH08039.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="46" mass="5300" checksum="27EDA3C3BEC248E1" modified="2017-03-15" version="1">MDHWGLLLMAFDDKGLRTKPQVENLSIHKNVIENVRIISNPWVGLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q433</accession>
    <name>A0A1M5Q433_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA sulfur modification protein DndC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2020</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08571.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900780.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2020"/>
    <dbReference type="EnsemblBacteria" id="SHH08571">
        <property type="protein sequence ID" value="SHH08571"/>
        <property type="gene ID" value="SAMN05444003_2020"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01713">
        <property type="entry name" value="PAPS_reductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002500">
        <property type="entry name" value="PAPS_reduct"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01507">
        <property type="entry name" value="PAPS_reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PAPS_reduct" evidence="1">
        <location>
            <begin position="25"/>
            <end position="201"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01507"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH08571.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="346" mass="39787" checksum="37C2FDA91342BAED" modified="2017-03-15" version="1">MSELVFQAIQRTTEALECHVDREWILGFSGGKDSTALLKIFVSALRKVKRFPQKVSVIFCDTGVENPVIDSYVKGLFCLLNSEFENLGLPIDLIMLKAPVEERYFVKVIGRGYPTPTNSFRWCTQSLRIKPVSRFIENSFADDVVVLIGSRKAESQQRRRSIEKMGGGHWQKQVEGNRRYDLFLPILDLSLADVWDSIFLLDYPRSIDPKKLESIYKDASGECPIIKSPDAPPCASGRFGCWTCTVVRKDRSATKMIEAGHDQLLPYLEFRNWISKFRDDLDMRWLVRRNGVPRPGPFSLMGRKTILEKVRELERAVGQQIIDDEETIEIKRLWDLDANHPQEKLC</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q4U8</accession>
    <name>A0A1M5Q4U8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2033</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08821.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900791.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH08821">
        <property type="protein sequence ID" value="SHH08821"/>
        <property type="gene ID" value="SAMN05444003_2033"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="33"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="58"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH08821.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="77" mass="8583" checksum="5332BF8EEBBDAD8A" modified="2017-03-15" version="1">MDNRRWTTVFEVTGSVLAMAYALLIASNTGNEILGFSLLLISALLFAAWGWLDKRWAFLLLQAFYAGSAIIGLVRWS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q567</accession>
    <name>A0A1M5Q567_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 8">30S ribosomal protein S20</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">rpsT</name>
        <name evidence="10" type="ORF">SAMN05444003_2043</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 8">Binds directly to 16S ribosomal RNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the bacterial ribosomal protein bS20 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09000.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900801.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2043"/>
    <dbReference type="EnsemblBacteria" id="SHH09000">
        <property type="protein sequence ID" value="SHH09000"/>
        <property type="gene ID" value="SAMN05444003_2043"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00500">
        <property type="entry name" value="Ribosomal_S20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002583">
        <property type="entry name" value="Ribosomal_S20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036510">
        <property type="entry name" value="Ribosomal_S20_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33398">
        <property type="entry name" value="PTHR33398"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01649">
        <property type="entry name" value="Ribosomal_S20p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46992">
        <property type="entry name" value="SSF46992"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00029">
        <property type="entry name" value="S20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 8" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="6 8 10" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5 8" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="4 8" id="KW-0699">rRNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00015666"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH09000.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="87" mass="9435" checksum="F72FDC63E19F208A" modified="2017-03-15" version="1">MANTAQSKKRARQNAARYAVNKQRRSRIRTHLRAVEEAIASGDQAAAAAALKAAQPEIMRGVTKGILHKNTAARKMSRLSARVKAIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QJR8</accession>
    <name>A0A1M5QJR8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2165</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14384.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH14384">
        <property type="protein sequence ID" value="SHH14384"/>
        <property type="gene ID" value="SAMN05444003_2165"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH14384.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="45" mass="5203" checksum="D68E95FF9F8AA43E" modified="2017-03-15" version="1">MIDDLGVYRDAVLGLQRSKRHRIKKNGCLREFSDLPEGHFGGFRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QJS9</accession>
    <name>A0A1M5QJS9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Glutaryl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_2149</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14040.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900959.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2149"/>
    <dbReference type="EnsemblBacteria" id="SHH14040">
        <property type="protein sequence ID" value="SHH14040"/>
        <property type="gene ID" value="SAMN05444003_2149"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003995">
        <property type="term" value="F:acyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006089">
        <property type="entry name" value="Acyl-CoA_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00072">
        <property type="entry name" value="ACYL_COA_DH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00073">
        <property type="entry name" value="ACYL_COA_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="20"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="135"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="241"/>
            <end position="386"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH14040.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="394" mass="43135" checksum="1C08F921ABBBA9BF" modified="2017-03-15" version="1">MSRAAFTPMDPLLLDHQLEDDERMIAEGARAFCADRLQPRVTDAFETEKVEPEIFAEMGEQGLLGVTIPEEYGGIGAGYVSYGLVAREVERVDSGYRSMMSVQSSLVMYPIHAYGTEEQRQKYLPKLASGEWIGCFGLTEPDAGSDPAGMKTRATKVQGGYVLNGSKMWISNSPIADVFVVWAKSDEHDGAIRGFILEKGTKGLSAPKIGKKLSLRASVTGEVVMDNVEVGEDALLPNVEGLKGPFGCLNRARYGIAWGVMGAAEDCWNRALQYGLDRTQFNKPLAQTQLYQLKLANMQTEIALGLQAALRVGRLFDEGKAAPEMISLIKRNNCGKALEIARHARDMHGGNGISGEFQVIRHMINLETVNTYEGTHDIHALILGRSQTGLQAFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QLC1</accession>
    <name>A0A1M5QLC1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Peptide/nickel transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_2189</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14874.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901020.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2189"/>
    <dbReference type="EnsemblBacteria" id="SHH14874">
        <property type="protein sequence ID" value="SHH14874"/>
        <property type="gene ID" value="SAMN05444003_2189"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045621">
        <property type="entry name" value="BPD_transp_1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19300">
        <property type="entry name" value="BPD_transp_1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="114"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="158"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="196"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="248"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="295"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="7">
        <location>
            <begin position="109"/>
            <end position="314"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH14874.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="329" mass="35590" checksum="4175FC411F43E910" modified="2017-03-15" version="1">MQNVLKIILQRLALGLLTLLVVSIVIFIAVNLLPGDFAELILGQAATPESVASIRRDLGLDQSMVTRYFSWLGGMVTGDLGTSFAQLNFQTNLGGTGGKTVAEQIAPRFANTMFLASVTAMIAVPLAVTLGILAALYRNTVFDRVANIATLSSISSPEFFMAYILILFLAVLNPIFPSLSNIYEGMTFGEKLEKTMLPALTLTLVVTAHMMRMTRAAIISLLASPYIEMARLKGISPMRVIVKHALPNALAPIINVIALNLAYLITGVVVVEVVFVYPGIGQLFVDSVKIRDIPVVQACCLIFAAAYILLNLMADILSILSNPRLRHPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QLE7</accession>
    <name>A0A1M5QLE7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Peptide/nickel transport system substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2186</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial solute-binding protein 5 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901017.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2186"/>
    <dbReference type="EnsemblBacteria" id="SHH14808">
        <property type="protein sequence ID" value="SHH14808"/>
        <property type="gene ID" value="SAMN05444003_2186"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030288">
        <property type="term" value="C:outer membrane-bounded periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030678">
        <property type="entry name" value="Peptide/Ni-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039424">
        <property type="entry name" value="SBP_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000914">
        <property type="entry name" value="SBP_5_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30290">
        <property type="entry name" value="PTHR30290"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00496">
        <property type="entry name" value="SBP_bac_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002741">
        <property type="entry name" value="MppA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SBP_bac_5" evidence="2">
        <location>
            <begin position="79"/>
            <end position="399"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH14808.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="515" mass="56714" checksum="8879313F4BFD0573" modified="2017-03-15" version="1">MNGISRRGLLKTGTAAGVLSLTGMPLRAQTRGGKLTAGLSGANTSDSWDSRTHSDLFMIASAQGAVFDSLTEVAADGSLVGELAESWESSDAQTWVFNLRQGVKFHNGKAFGADDVIESLSMHLGEDSKSAAKPIVENIVEMNKLGEHQLELVLSAPNADFPYLLSDYHILMYPAGQIEEAIAQGIGTGLYQVQSFDPGVRMVATRVDDHYKGDSVGLFDEIEYIAINDNTARMNAMMTGQVDAINRIDFKTEALLRANPALRIQEVTGNQQYTFPMLTDTAPYNDVNVRRAIKYGVNRQELVDKILLGHGAVGNDTPIGPANQYYNTEMEQLEYDPDKSKFYLEQAGLSSIDLDLSASNAAFEGAVDAAQLMQASMSAGGININVIQEPADGYWSNVWLKKSFCACYWSGRATEDWMFSTAYEAGVPWNDSQWDEKDSARFQELLVMARAELDSDKRRAQYFEMQQILRDDGGVLVPMFANYVQAVNNRISSPETVGNLWQMDNGRMAERWSVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QUN8</accession>
    <name>A0A1M5QUN8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">CBS domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2307</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17263.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901207.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2307"/>
    <dbReference type="EnsemblBacteria" id="SHH17263">
        <property type="protein sequence ID" value="SHH17263"/>
        <property type="gene ID" value="SAMN05444003_2307"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd04623">
        <property type="entry name" value="CBS_pair_bac_euk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044725">
        <property type="entry name" value="CBSX3_CBS_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0129">CBS domain</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CBS" evidence="3">
        <location>
            <begin position="38"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="3">
        <location>
            <begin position="107"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH17263.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="173" mass="18648" checksum="FC17A6C4D5023FF8" modified="2017-03-15" version="1">MPTSYQAPMAGDKAKQASASQSVESKANVEAGKIKYLLDRKGNDVITINQSETIAAAVQVLHDKRIGALIVVDDMGALAGILSERDIVRKLAETPGQTLPQTVAENMTKNVVTCSEDDTLIEVLRRMSEGKFRHMPVVNGGMLAGMVTIGDVVNSRLNELEFEALQLKQLIVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QV27</accession>
    <name>A0A1M5QV27_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Glycine oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2339</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2">Cofactor biosynthesis; thiamine diphosphate biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the DAMOX/DASOX family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901263.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2339"/>
    <dbReference type="EnsemblBacteria" id="SHH17975">
        <property type="protein sequence ID" value="SHH17975"/>
        <property type="gene ID" value="SAMN05444003_2339"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00060"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003884">
        <property type="term" value="F:D-amino-acid oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046416">
        <property type="term" value="P:D-amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009229">
        <property type="term" value="P:thiamine diphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023209">
        <property type="entry name" value="DAO"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012727">
        <property type="entry name" value="Gly_oxidase_ThiO"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11530">
        <property type="entry name" value="PTHR11530"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02352">
        <property type="entry name" value="thiamin_ThiO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAO" evidence="4">
        <location>
            <begin position="4"/>
            <end position="315"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004948"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH17975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="331" mass="35744" checksum="F7CDC4B5195D7046" modified="2017-03-15" version="1">MTQVTIIGGGVAGLCVAQNLLNRGAEVTVYDKGGAPGPHACSWWAGGMLAPHCEGESAEEPVIRLGQEAADWWDFHTGAVTRNGSLVISPTRDEADLRRFARRTSQFKEVNGAEIAALEPDLEGRFSKGLYFETEAHLAPRQALASLREKLIQAGVNFITEEADPKAHATNGLTVDCRGFTAKDTLEDLRGVKGEMLILSCPDVTLSRPIRLLHPRIPLYIVPRGDGIFMLGATQIEATASKHVTARSLLELLSAAYALNPAFGEAEILETGVDNRPAFPDNLPRIRRDGNLIQANGLFRHGFLLAPALARMVAEAIFDNATPEVMDETAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QWH9</accession>
    <name>A0A1M5QWH9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Membrane protein involved in the export of O-antigen and teichoic acid</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2353</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18278.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2353"/>
    <dbReference type="EnsemblBacteria" id="SHH18278">
        <property type="protein sequence ID" value="SHH18278"/>
        <property type="gene ID" value="SAMN05444003_2353"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="28"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="70"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="105"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="138"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="164"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="197"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="225"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="286"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="316"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="358"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="405"/>
            <end position="423"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH18278.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="438" mass="47954" checksum="915E35562EFAF673" modified="2017-03-15" version="1">MRGFVVVLAGTGGNRVLRLISSLLLTRILFPEAFGLMAIISVVMGGLQMFSDIGIRASIVQSKHGADRDFLNTAWTIQIIRGLILSLICLAIAQPLADFYEEPMLAALMPIMAIGPLMSGFASTKIATADRELRQEKLVAITLITQVLGIIVTVALALWTQSVFALAIGGQINTAMFLLGTHFLLPGPSNRLSWNKVYARELISFGKFVFLSTLSSFILGRSDMAILGVYLSIATLGIFNIGYMVGSLPLQVLKPLSHRVVFPLYSRRPPYENESNRKNMRRVRRLVVAGGLFLTAIFAFLGVFLIDLLFDPRYALAGPIVSTVAFAIVPLIVIEGYEAALLSAGDSRRSFYLKGSTAICQLTFLFAGLTFFGLFGAILAPGIAALTTYPLLVKFVKRYDVWDPIADFSYLAAGLALTMFGCYRNWEDFKPLFDLSSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5REJ1</accession>
    <name>A0A1M5REJ1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative ABC transport system ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2546</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24757.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901891.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2546"/>
    <dbReference type="EnsemblBacteria" id="SHH24757">
        <property type="protein sequence ID" value="SHH24757"/>
        <property type="gene ID" value="SAMN05444003_2546"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03255">
        <property type="entry name" value="ABC_MJ0796_LolCDE_FtsE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017911">
        <property type="entry name" value="MacB_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="3"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="39"/>
            <end position="46"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH24757.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="218" mass="23256" checksum="C7C6BAF90EA6878C" modified="2017-03-15" version="1">MLLRARDVSKTYSIADQTLQVLRGVDLDLAASETLALTGESGSGKSTLLHLVGGLDVPDAGSIEIEGTDIAGRSDAERAHLRRTDIGVVFQQFNLIPSLTVADNIAFQARLAGSADKEWIAYLGQTLGLEDQLSKYPEQLSGGQQQRVAIGRTLAVRPKLVLADEPTGNLDEASAQTVMDLFLKLVGETRAGLLLVTHSKSLASRLDRNVHLSVGVVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RFF6</accession>
    <name>A0A1M5RFF6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Selenophosphate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2550</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24836.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901662.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2550"/>
    <dbReference type="EnsemblBacteria" id="SHH24836">
        <property type="protein sequence ID" value="SHH24836"/>
        <property type="gene ID" value="SAMN05444003_2550"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02195">
        <property type="entry name" value="SelD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.650.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010918">
        <property type="entry name" value="PurM-like_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036676">
        <property type="entry name" value="PurM-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016188">
        <property type="entry name" value="PurM-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036921">
        <property type="entry name" value="PurM-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017584">
        <property type="entry name" value="Pyridine_nucleo_diS_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004536">
        <property type="entry name" value="SPS/SelD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10256">
        <property type="entry name" value="PTHR10256"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="AIRS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02769">
        <property type="entry name" value="AIRS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55326">
        <property type="entry name" value="SSF55326"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56042">
        <property type="entry name" value="SSF56042"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03169">
        <property type="entry name" value="Nterm_to_SelD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00476">
        <property type="entry name" value="selD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0711">Selenium</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="6">
        <location>
            <begin position="9"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="domain" description="AIRS" evidence="4">
        <location>
            <begin position="424"/>
            <end position="531"/>
        </location>
    </feature>
    <feature type="domain" description="AIRS_C" evidence="5">
        <location>
            <begin position="543"/>
            <end position="708"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00586"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH24836.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="713" mass="75010" checksum="3F027B4C19CA9408" modified="2017-03-15" version="1">MNTLPKVKDLVLVGGGHTHALVLRAWGMNPLAGVRVTVINPAPTAAYSGMLPGFVAGHYTRDELDIDLLRLARFAGARMVVGIVTEIDKDAKMITVPGRPPIAYDLCSIDIGITSEMPKLKGFTEHAIPAKPLAPFAHKWNAFRTSHSEGNIAVIGGGVAGVELAMAMQHAVPKAKVRILDRSKSLTAVGLQGRNRLKRQLTDMGIELVEGASGCEVTADSVVLENGDAIPSDFTVGAAGAEPFEWPKDIGLNMHDGFIAVDATLRSSDPNIFAVGDCAHLTASPRSKAGVFAVREAPFLFDNLRAVLSGGALTNYDPQRDYLKLISMGGKSAMAEKFGRAFHGPLLWKWKDRIDRAFMTKLEDLPVMAKPEVPRTAAIGLKEVLGDKPLCAGCGSKVGNSALKSALTGLPRNARKDVERLPSDDAGVLTVGGQKQVISTDHLRAFTEDPVIMARISAVHALGDIWAMGANPQAATANIVLPQMSEDLQSRTLSEVMSAAQEVFADAGAEIVGGHSSMGAEMSIGFTVTGLLDRDPITLGGAQDGDQLMLTKPIGSGVILAAEMAGAARGWDVHRLFERMCQGQGAAADILSDSHAMTDVTGFGLLGHLWGMCEQSQVAVELTQAAVPFFDGAEALSNEGHRSSIFGSNVASVGAVEGTPHDLLFDPQTSGGLLAAVSGDMAADCVAKLRAAGYEDAMVIGRIIKGPATIKVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RI80</accession>
    <name>A0A1M5RI80_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Heat shock protein HspQ</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2599</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25858.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2599"/>
    <dbReference type="EnsemblBacteria" id="SHH25858">
        <property type="protein sequence ID" value="SHH25858"/>
        <property type="gene ID" value="SAMN05444003_2599"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.390">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011722">
        <property type="entry name" value="Hemimethylated_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036623">
        <property type="entry name" value="Hemimethylated_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08755">
        <property type="entry name" value="YccV-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00992">
        <property type="entry name" value="YccV-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141255">
        <property type="entry name" value="SSF141255"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02097">
        <property type="entry name" value="yccV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0346">Stress response</keyword>
    <feature type="domain" description="YccV-like" evidence="1">
        <location>
            <begin position="7"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH25858.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="110" mass="12856" checksum="8F8BE66C6F923304" modified="2017-03-15" version="1">MTMFKTRAKYHLGQVVRHRKHPFRGVVFDVDAIFSNTEAWYEAIPEDARPSKDQPFYHLLAENDQSYYVAYVSEQNLIADYSGEPVQHPDLEDLFGPFEDGQYPLQVQMN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RL61</accession>
    <name>A0A1M5RL61_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 10">Phosphoenolpyruvate carboxykinase (ATP)</fullName>
            <shortName evidence="10">PCK</shortName>
            <shortName evidence="10">PEP carboxykinase</shortName>
            <shortName evidence="10">PEPCK</shortName>
            <ecNumber evidence="4 10">4.1.1.49</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">pckA</name>
        <name evidence="11" type="ORF">SAMN05444003_2647</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>ATP + oxaloacetate = ADP + CO2 + phosphoenolpyruvate</text>
            <dbReference type="Rhea" id="RHEA:18617"/>
            <dbReference type="ChEBI" id="CHEBI:16452"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="4.1.1.49"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="10">Binds 1 Mn(2+) ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 10">Carbohydrate biosynthesis; gluconeogenesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 10">Belongs to the phosphoenolpyruvate carboxykinase (ATP) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.49" evidence="4 10"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901813.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2647"/>
    <dbReference type="EnsemblBacteria" id="SHH26930">
        <property type="protein sequence ID" value="SHH26930"/>
        <property type="gene ID" value="SAMN05444003_2647"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00138"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004612">
        <property type="term" value="F:phosphoenolpyruvate carboxykinase (ATP) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006094">
        <property type="term" value="P:gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00484">
        <property type="entry name" value="PEPCK_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.449.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.228.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00453">
        <property type="entry name" value="PEPCK_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001272">
        <property type="entry name" value="PEP_carboxykinase_ATP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013035">
        <property type="entry name" value="PEP_carboxykinase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008210">
        <property type="entry name" value="PEP_carboxykinase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30031">
        <property type="entry name" value="PTHR30031"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01293">
        <property type="entry name" value="PEPCK_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006294">
        <property type="entry name" value="PEP_crbxkin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF68923">
        <property type="entry name" value="SSF68923"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00224">
        <property type="entry name" value="pckA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 10" id="KW-0210">Decarboxylase</keyword>
    <keyword evidence="5 10" id="KW-0312">Gluconeogenesis</keyword>
    <keyword evidence="11" id="KW-0418">Kinase</keyword>
    <keyword evidence="9 10" id="KW-0456">Lyase</keyword>
    <keyword evidence="10" id="KW-0464">Manganese</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11" id="KW-0808">Transferase</keyword>
    <feature type="binding site" evidence="10">
        <location>
            <position position="60"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="194"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="200"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="219"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="237"/>
            <end position="245"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="258"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="286"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="324"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="449"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001389"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004742"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00453"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH26930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="532" mass="58621" checksum="9AD83FC657A1368C" modified="2017-03-15" version="1">MDHGTVNPQMKLEDQGIKGLGYVYYNYSEEELQKAAIDNGEGVEGKGGTFLATTGKHTGRSPKDKFVVRTPSVEDTIWWENNPPMEPSKFDALYDDMLAHMEGGSYYVSDLFGGADPTHRLDVRVVTELAWHGLFIRHLLRRPEVDELANFAPDFTIINCPTFKADPDKHGCRSETVIALNFDRKLILIGGTEYAGENKKSVFTLLNYLLPEKGIMPMHCSANHAPGNPVDTAIFFGLSGTGKTTLSADPSRILIGDDEHGWSERGTFNFEGGCYAKTIGLDPEAEPEIYATCSMPHTVIENMVFDPDTKELDFNDDSLTANMRCAYPLHYISNASESALGGHPKNIIMLTCDAFGVLPPISRLTPAQAMYHFLSGFTSKVAGTERGVTEPEPTFSTCFGAPFMPRRPEAYGDLLRQKIASHGATCWLVNTGWTGGAYGTGSRMPIKATRALLAAALDQSLVENHFRKDPNFGFEVPMTCEGVDDQLLNPRETWADKDAYDAQAAKLVEMFSDNFEKYVPYIDEDVKAAAIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RWB0</accession>
    <name>A0A1M5RWB0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Methylglyoxal synthase</fullName>
            <shortName evidence="2">MGS</shortName>
            <ecNumber evidence="2">4.2.3.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">mgsA</name>
        <name evidence="5" type="ORF">SAMN05444003_2726</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the formation of methylglyoxal from dihydroxyacetone phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>dihydroxyacetone phosphate = methylglyoxal + phosphate</text>
            <dbReference type="Rhea" id="RHEA:17937"/>
            <dbReference type="ChEBI" id="CHEBI:17158"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57642"/>
            <dbReference type="EC" id="4.2.3.3"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the methylglyoxal synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="4.2.3.3" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30451.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901981.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2726"/>
    <dbReference type="EnsemblBacteria" id="SHH30451">
        <property type="protein sequence ID" value="SHH30451"/>
        <property type="gene ID" value="SAMN05444003_2726"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008929">
        <property type="term" value="F:methylglyoxal synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019242">
        <property type="term" value="P:methylglyoxal biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01422">
        <property type="entry name" value="MGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1380">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00549">
        <property type="entry name" value="Methylglyoxal_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004363">
        <property type="entry name" value="Methylgl_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018148">
        <property type="entry name" value="Methylglyoxal_synth_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011607">
        <property type="entry name" value="MGS-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036914">
        <property type="entry name" value="MGS-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30492">
        <property type="entry name" value="PTHR30492"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02142">
        <property type="entry name" value="MGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006614">
        <property type="entry name" value="Methylglyox_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00851">
        <property type="entry name" value="MGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52335">
        <property type="entry name" value="SSF52335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00160">
        <property type="entry name" value="MGSA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01335">
        <property type="entry name" value="METHYLGLYOXAL_SYNTH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51855">
        <property type="entry name" value="MGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MGS-like" evidence="4">
        <location>
            <begin position="1"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="2">
        <location>
            <begin position="59"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="2 3">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="12"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="16"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="92"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006287"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00549"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR006614-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51855"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH30451.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="128" mass="13599" checksum="CC3E165B193E3C3D" modified="2017-03-15" version="1">MSGQKRIALIAHDRKKDDLADWVEAHKAVLAGHVIICTATTGGRIMEKVPSLTVKTTKSGPLGGDQQIGGMIAEGDIDLLIFFTDPLSPHPHDVDVKALTRLATVYDVPMANSPATANLIVASGFLDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RWV8</accession>
    <name>A0A1M5RWV8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">Alanine dehydrogenase</fullName>
            <ecNumber evidence="2 5">1.4.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_2729</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>H2O + L-alanine + NAD(+) = H(+) + NADH + NH4(+) + pyruvate</text>
            <dbReference type="Rhea" id="RHEA:18405"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="EC" id="1.4.1.1"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the AlaDH/PNT family.</text>
    </comment>
    <dbReference type="EC" id="1.4.1.1" evidence="2 5"/>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30518.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901987.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2729"/>
    <dbReference type="EnsemblBacteria" id="SHH30518">
        <property type="protein sequence ID" value="SHH30518"/>
        <property type="gene ID" value="SAMN05444003_2729"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000286">
        <property type="term" value="F:alanine dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042853">
        <property type="term" value="P:L-alanine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05305">
        <property type="entry name" value="L-AlaDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008141">
        <property type="entry name" value="Ala_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008143">
        <property type="entry name" value="Ala_DH/PNT_CS2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007886">
        <property type="entry name" value="AlaDH/PNT_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007698">
        <property type="entry name" value="AlaDH/PNT_NAD(H)-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42795">
        <property type="entry name" value="PTHR42795"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01262">
        <property type="entry name" value="AlaDh_PNT_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05222">
        <property type="entry name" value="AlaDh_PNT_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000183">
        <property type="entry name" value="Alanine_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01002">
        <property type="entry name" value="AlaDh_PNT_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01003">
        <property type="entry name" value="AlaDh_PNT_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00518">
        <property type="entry name" value="alaDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00837">
        <property type="entry name" value="ALADH_PNT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5 8" id="KW-0520">NAD</keyword>
    <keyword evidence="8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3 5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AlaDh_PNT_N" evidence="10">
        <location>
            <begin position="4"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="domain" description="AlaDh_PNT_C" evidence="9">
        <location>
            <begin position="149"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="6">
        <location>
            <position position="96"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="6">
        <location>
            <position position="270"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="15"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="75"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="134"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="198"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="203"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="239"/>
            <end position="240"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="267"/>
            <end position="270"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="279"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="298"/>
            <end position="301"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005689"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012897"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR000183"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000183-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000183-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000183-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM01002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM01003"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH30518.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="372" mass="38720" checksum="0B408D46DC5ACEE3" modified="2017-03-15" version="1">MRIGCPKEIKPQEFRVGLTPNAAREAVNHGHSVVVETNAGTGAGFSDEDYVQAGASILGTAAEVFETAEMIVKVKEPQAAERKMLREGQLLFTYLHLAPDPEQTKDLIDSGATCIAYETVTDANGGLPLLAPMSEVAGRLAPQVGAWTLQKANGGRGVLMGGVPGVGPARVVVIGGGVVGTHAAKIAAGMGADVTVLDRSLPRLRYLDDVFGGQFKTSYANAGNTIELAREADLIIGAVLIPGAAAPKLISKAQLSELKPGAALVDVAIDQGGCFETSRATTHQDPIYDVDGIMHYCVANMPGAVARTSTIALGNATMPFMLALADKGWRQACEDDPHLLNGLNVHAGQLTYYAVGKALGIDVISPSLALKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S0R4</accession>
    <name>A0A1M5S0R4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2796</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32054.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH32054">
        <property type="protein sequence ID" value="SHH32054"/>
        <property type="gene ID" value="SAMN05444003_2796"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="37"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH32054.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="101" mass="11491" checksum="7F9FAFBDF749707C" modified="2017-03-15" version="1">MSIRLRSILAFTGLVVVFVAGGLLTQSEIFSSSEIEFFLFLIMVPLFLLGIAAPASRSMLKSTKWLENERNLQIWQDSHGPFMGKFREWFLGIDKAGHLRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S474</accession>
    <name>A0A1M5S474_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Molybdenum cofactor cytidylyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2846</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33279.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902166.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2846"/>
    <dbReference type="EnsemblBacteria" id="SHH33279">
        <property type="protein sequence ID" value="SHH33279"/>
        <property type="gene ID" value="SAMN05444003_2846"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025877">
        <property type="entry name" value="MobA-like_NTP_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12804">
        <property type="entry name" value="NTP_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="NTP_transf_3" evidence="1">
        <location>
            <begin position="6"/>
            <end position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12804"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH33279.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="202" mass="21917" checksum="7C0CFAF6FBE356E7" modified="2017-03-15" version="1">MKDVSAILLAAGLSRRMGQKNKLLLPVEGRPMVCHVAETYIDVVDGPLIVVTGFEEDHIRQALKGLSITFARNEAFSTGQAGSVAKGSSVAPEAKAILVGLADQPLLKACDLQELLEARRRHAQVKITVPTKNGQRGNPIVIPAALRSRLTENPDKPGCIHFTRAHPETVQKVEFSTDGFFTDVDTPQDFAKVLQTKEEAVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SCN4</accession>
    <name>A0A1M5SCN4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Dimethylglycine dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2898</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GcvT family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36235.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902281.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2898"/>
    <dbReference type="EnsemblBacteria" id="SHH36235">
        <property type="protein sequence ID" value="SHH36235"/>
        <property type="gene ID" value="SAMN05444003_2898"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032503">
        <property type="entry name" value="FAO_M"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013977">
        <property type="entry name" value="GCV_T_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006222">
        <property type="entry name" value="GCV_T_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029043">
        <property type="entry name" value="GcvT/YgfZ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027266">
        <property type="entry name" value="TrmE/GcvT_dom1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16350">
        <property type="entry name" value="FAO_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01571">
        <property type="entry name" value="GCV_T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08669">
        <property type="entry name" value="GCV_T_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101790">
        <property type="entry name" value="SSF101790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAO" evidence="2">
        <location>
            <begin position="11"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="domain" description="FAO_M" evidence="5">
        <location>
            <begin position="375"/>
            <end position="427"/>
        </location>
    </feature>
    <feature type="domain" description="GCV_T" evidence="3">
        <location>
            <begin position="431"/>
            <end position="701"/>
        </location>
    </feature>
    <feature type="domain" description="GCV_T_C" evidence="4">
        <location>
            <begin position="737"/>
            <end position="805"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF08669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF16350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH36235.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="816" mass="90044" checksum="C6FEFEBCC647405E" modified="2017-03-15" version="1">MSDSQLPAYARVVIVGGGVMGVGLAYHLAHEGWTDVVLLEKAELTSGSTWHAAGQITHSTSSFGLGKCVDYNIGLYSGGLERETGQPVTWHGCGSFRLAYDQDEMDWLRHTLSVGTALGFNIELVKPDRIAELHPFYNLDGVIGALHTPDDGHVDPTNVTMAMAAGARQLGVKIVRRCRATNITQADTGEWIVESEKGTIRCEHVVNAGGTYARQMGEWSGLQLPMTSMTHHYFVTENVPEFENLDTELPVIRDDKKVSGYIRMEQKRGLIGIYEKSNPNTVWEDHCPWEAENELFDPDYDRVMPWLEESLNRMPIFSELGITREVHGAISHPPDGNPLIGPAPGVRNYWCCCGTQIGIGWGPGLSRELARWMVHGAADISMREFDPRRFGDYASKDWQVIKAKEDYCLRHEIPFPHFNRLAGRPVKPGALYETLKAKGAVYEEIYGHERPRWFAPEGMEAKDIYGFGRTELHDVIAAECRAVRERVGIMDVTAFTKILVSGADAESFLDGLVANRLPQKVGGIALTHMLNERGRIELETTVVRMEDGEDGFYLVCAAFFEQRLLDHLTKHLTDENVQVTNLSSSWSALSLNGPKSRDVLASCTAAPLDNANFKWLTAQKIAIAGQSAWAFRMSYAGELGWEIHLPNDSCQAVYDALWSAGEPHGIADYGSFAMNILRMEKGFKGAGELTNEVTLPEADVMRFVKTDKSFLGKDASLANDDEMLWVCAYLEVEPNESEDGNGGEAVLWNGDVVGSTASIVYGHSVGKILAFAYIKPATAEPGTKLEVVIAGEKRVAKVLGEPAYDPQSLRPRTDAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SKI3</accession>
    <name>A0A1M5SKI3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF1992 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3021</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH39056.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902467.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3021"/>
    <dbReference type="EnsemblBacteria" id="SHH39056">
        <property type="protein sequence ID" value="SHH39056"/>
        <property type="gene ID" value="SAMN05444003_3021"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018961">
        <property type="entry name" value="DnaJ_homolog_subfam-C_membr-28"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09350">
        <property type="entry name" value="DUF1992"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1992" evidence="1">
        <location>
            <begin position="8"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH39056.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="100" mass="11256" checksum="B72E3EF8B10EBEFD" modified="2017-03-15" version="1">MDHPLIDLISAKIRDAEARGEFDNLAGAGKPLDLSDADADFLARALKENDAVPEFVLLHKQLEELRAELPNLPVSERKEVLRKIAELEPKMELAKQAWTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5STC3</accession>
    <name>A0A1M5STC3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, LacI family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_3095</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41754.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3095"/>
    <dbReference type="EnsemblBacteria" id="SHH41754">
        <property type="protein sequence ID" value="SHH41754"/>
        <property type="gene ID" value="SAMN05444003_3095"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01392">
        <property type="entry name" value="HTH_LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000843">
        <property type="entry name" value="HTH_LacI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025997">
        <property type="entry name" value="SBP_2_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00356">
        <property type="entry name" value="LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13407">
        <property type="entry name" value="Peripla_BP_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00354">
        <property type="entry name" value="HTH_LACI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50932">
        <property type="entry name" value="HTH_LACI_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH lacI-type" evidence="4">
        <location>
            <begin position="22"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH41754.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="358" mass="39741" checksum="DA8628A34096D8F4" modified="2017-03-15" version="1">MQMFDKMNKTETLTRTPEMLRPTTKDLAKEAGVSRATVDRVLNGREGVKQKTVDRVNEAIEKLGFVRNIQAANLARSQKYRFVFALPRSGDQFLEEIIRHIEEAGTTFAEDLVWCDVHQIDENDPHSISAFLATLNSDKVSGVAIMAPESPQVRDAIFRLQERGVAALPFISDQTTANDHWVGMNNHSAGATAANLIGRFSGSATGSVMVIAESMLSRDSLERRLGFDEELNTFFPNLKALPSLETYGSMDRAHEIISSAVSNNRDLIGLYVMSSEARPPLMTLKELQGPKELITIAHERTPFTEAELRAGRLDGIIAQNSGHLVRSAVRKLKATIDKRKAKGSQEKIRVEVILRTNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5STI0</accession>
    <name>A0A1M5STI0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">L-threonine 3-dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_3102</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the zinc-containing alcohol dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41851.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3102"/>
    <dbReference type="EnsemblBacteria" id="SHH41851">
        <property type="protein sequence ID" value="SHH41851"/>
        <property type="gene ID" value="SAMN05444003_3102"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016616">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002328">
        <property type="entry name" value="ADH_Zn_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00059">
        <property type="entry name" value="ADH_ZINC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="PKS_ER" evidence="3">
        <location>
            <begin position="16"/>
            <end position="343"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU361277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH41851.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="346" mass="37418" checksum="4E629FF3102E012E" modified="2017-03-15" version="1">MTNQMIALAKSKPEPGLWKVDAPIPELGPDDVLIKINKTGICGTDIHIWDWDAWASATVPVPIITGHEFAGEVVDMGRNVSGLKLGQRCSGEGHLIGTESRQSRSGKFHLDPGTRGIGVNVQGAFAQYLRLPAFNVVPLPDDIPDEIGAILDPLGNAVHTALSFPLLGEDVLITGAGPIGIMAAAVARHAGARNVVLTDVNTYRLDLAAKVVPNLRCVNVAKEDLHDVVHELGLKEGFDIGLEMSGNQAALDQMVEALVMGGKIALLGIPPGQSPVDWSRIVFKAITIKGVYGREMFETWYKMIAMLQYGLDVSRVITHRYDIADFREGFEQMKSGRSGKVVLNWT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SUL5</accession>
    <name>A0A1M5SUL5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Dihydrofolate reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3125</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42219.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902681.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3125"/>
    <dbReference type="EnsemblBacteria" id="SHH42219">
        <property type="protein sequence ID" value="SHH42219"/>
        <property type="gene ID" value="SAMN05444003_3125"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008703">
        <property type="term" value="F:5-amino-6-(5-phosphoribosylamino)uracil reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009231">
        <property type="term" value="P:riboflavin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.430.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024072">
        <property type="entry name" value="DHFR-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002734">
        <property type="entry name" value="RibDG_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01872">
        <property type="entry name" value="RibD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53597">
        <property type="entry name" value="SSF53597"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RibD_C" evidence="1">
        <location>
            <begin position="7"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01872"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH42219.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="191" mass="20892" checksum="968923978FA8198D" modified="2017-03-15" version="1">MKCSVYIAATADGFIARKDGGIDWLEIAGDPEKGVGEGYIDFETFIASVDCMIMGRKTMEAISSFNLTPEQWPYGDLKIIALSRSLKEPPDNLKGKVEMYSGDLPALLNRLEQEGHKGAYVDGGSTIQSFIRHGLMNEIIVTQMPILIGEGQPLFGKTPQDVRLSNPSVVVCPSGYVQIRYSVGDERASDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SWW7</accession>
    <name>A0A1M5SWW7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 8">30S ribosomal protein S5</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">rpsE</name>
        <name evidence="12" type="ORF">SAMN05444003_3167</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 8">Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body.</text>
    </comment>
    <comment type="function">
        <text evidence="8">With S4 and S12 plays an important role in translational accuracy.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Part of the 30S ribosomal subunit. Contacts proteins S4 and S8.</text>
    </comment>
    <comment type="domain">
        <text evidence="8">The N-terminal domain interacts with the head of the 30S subunit; the C-terminal domain interacts with the body and contacts protein S4. The interaction surface between S4 and S5 is involved in control of translational fidelity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 8 10">Belongs to the universal ribosomal protein uS5 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42987.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902750.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3167"/>
    <dbReference type="EnsemblBacteria" id="SHH42987">
        <property type="protein sequence ID" value="SHH42987"/>
        <property type="gene ID" value="SAMN05444003_3167"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015935">
        <property type="term" value="C:small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01307_B">
        <property type="entry name" value="Ribosomal_S5_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000851">
        <property type="entry name" value="Ribosomal_S5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005712">
        <property type="entry name" value="Ribosomal_S5_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005324">
        <property type="entry name" value="Ribosomal_S5_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013810">
        <property type="entry name" value="Ribosomal_S5_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018192">
        <property type="entry name" value="Ribosomal_S5_N_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13718">
        <property type="entry name" value="PTHR13718"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00333">
        <property type="entry name" value="Ribosomal_S5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03719">
        <property type="entry name" value="Ribosomal_S5_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01021">
        <property type="entry name" value="rpsE_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00585">
        <property type="entry name" value="RIBOSOMAL_S5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50881">
        <property type="entry name" value="S5_DSRBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 8 9" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="6 8 9" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5 8" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="4 8" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="S5 DRBM" evidence="11">
        <location>
            <begin position="20"/>
            <end position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003093"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008945"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00016778"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01307"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHH42987.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="191" mass="20570" checksum="B68523F61AECCFC1" modified="2017-03-15" version="1">MAERENRGRGRNRDEQAPEFADRLVAINRVSKTTKGGKNFGFAALVVVGDQKGRVGFGKGKAKEVPEAIRKATEQAKRQMIRVPLRDGRTLHHDIEGRHGAGKVIMRTAPVGTGIIAGGPMRAVFEMLGVQDVVSKSNGSANPYNMIRATIDGLKKCQSPRNVAQRRGKKVADVLHKDAAPAAEAEVPAEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T4E7</accession>
    <name>A0A1M5T4E7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Carbon-monoxide dehydrogenase medium subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3233</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45615.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902887.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3233"/>
    <dbReference type="EnsemblBacteria" id="SHH45615">
        <property type="protein sequence ID" value="SHH45615"/>
        <property type="gene ID" value="SAMN05444003_3233"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.43.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005107">
        <property type="entry name" value="CO_DH_flav_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036683">
        <property type="entry name" value="CO_DH_flav_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016166">
        <property type="entry name" value="FAD-bd_PCMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016167">
        <property type="entry name" value="FAD-bd_PCMH_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002346">
        <property type="entry name" value="Mopterin_DH_FAD-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00941">
        <property type="entry name" value="FAD_binding_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01092">
        <property type="entry name" value="CO_deh_flav_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55447">
        <property type="entry name" value="SSF55447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51387">
        <property type="entry name" value="FAD_PCMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0274">FAD</keyword>
    <keyword evidence="1" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding PCMH-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH45615.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="260" mass="26537" checksum="A29C9C46908D8941" modified="2017-03-15" version="1">MYETTFHKASSADDAASKLGAAEEGKLLAGGQTLIPTMKARFASPSDLISLKDASISGICRDGDSVVIGAMTTHAEVASSVDVPAYLAALAGGIGDPAVRHRGTIGGSIANNDPAADYPSACLALGATIRTNQREIAAADYFEGMFETALEEDEVIISVVFPDADKAAYAKFPNPASRYAMVGVFVAQSGGETRVAVTGAGEDGVFRHEGLEAALADSFTENSAASVAVSADGLLSDIHGSSEYRAALITAMAKRAVAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T665</accession>
    <name>A0A1M5T665_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Aldehyde dehydrogenase (NAD+)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3259</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46202.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3259"/>
    <dbReference type="EnsemblBacteria" id="SHH46202">
        <property type="protein sequence ID" value="SHH46202"/>
        <property type="gene ID" value="SAMN05444003_3259"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004029">
        <property type="term" value="F:aldehyde dehydrogenase (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044638">
        <property type="entry name" value="ALDH7A1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43521">
        <property type="entry name" value="PTHR43521"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="2">
        <location>
            <begin position="11"/>
            <end position="472"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH46202.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="481" mass="51365" checksum="7E792D35E98D4912" modified="2017-03-15" version="1">MTHLNLIAGEWLAGESEIENRNPSDLSDVIGQFSQANSSQLNTTLAQAQTAQREWAQYGLERRQAILMNIGNELMARAEELGTLLSREEGKPLAEGKGEVYRAGQFFAYYAAECLRQIGENADGVRDGVEIDVRREPVGVVAVISPWNFPTATASWKIAPALCYGNAVVWKPANITPASAVALTEIIARQDIPKGLFSLVMGSGGTIGQQLVESPSINAISFTGSVPVGKQIARDAIQNLTKVQMEMGSKNALAVMNDANLDLAVALALGGAFGGTGQKCTASSRLIVHASIHDAFVEKLVDGATAMKVGHALDDSTQMGPVVSQQQLDENLAYVDLGKSEGAELACGGARLDLPHDGYYMSPGVFLNTRNDMRINREEMFAPLTSVIKVDSYEEALATVNDTNFGLTSGIVTQNLARATHFRRNAQTGVVTINLPTAGTDYHVPFGGRGDSSYGPREQGKAAAEFYTTVKTAYISAGTPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T6Y2</accession>
    <name>A0A1M5T6Y2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">Urease subunit gamma</fullName>
            <ecNumber evidence="4 5">3.5.1.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Urea amidohydrolase subunit gamma</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">ureA</name>
        <name evidence="6" type="ORF">SAMN05444003_3271</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 4 5">
            <text>2 H(+) + H2O + urea = CO2 + 2 NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:20557"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16199"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="EC" id="3.5.1.5"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4">Nitrogen metabolism; urea degradation; CO(2) and NH(3) from urea (urease route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Heterotrimer of UreA (gamma), UreB (beta) and UreC (alpha) subunits. Three heterotrimers associate to form the active enzyme.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4 5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 5">Belongs to the urease gamma subunit family.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.5" evidence="4 5"/>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46489.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902948.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3271"/>
    <dbReference type="EnsemblBacteria" id="SHH46489">
        <property type="protein sequence ID" value="SHH46489"/>
        <property type="gene ID" value="SAMN05444003_3271"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00258">
        <property type="reaction ID" value="UER00370"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016151">
        <property type="term" value="F:nickel cation binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009039">
        <property type="term" value="F:urease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043419">
        <property type="term" value="P:urea catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00390">
        <property type="entry name" value="Urease_gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00739">
        <property type="entry name" value="Urease_gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012010">
        <property type="entry name" value="Urease_gamma"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002026">
        <property type="entry name" value="Urease_gamma/gamma-beta_su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036463">
        <property type="entry name" value="Urease_gamma_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00547">
        <property type="entry name" value="Urease_gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001223">
        <property type="entry name" value="Urease_gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54111">
        <property type="entry name" value="SSF54111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00193">
        <property type="entry name" value="urease_gam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 4 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00739"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH46489.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="100" mass="10918" checksum="B48EBC539C774A1D" modified="2017-03-15" version="1">MQLTPREKDKLLVAMAAEVARKRLARGVKLNHPEAIALITDAVIEGARDGRSVADMMQAGAQVITRDQCMNGVSDMIHEVQVEATFPDGTKLVTVHNPIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TAQ0</accession>
    <name>A0A1M5TAQ0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acyl-CoA reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3307</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000009">
        <property type="protein sequence ID" value="SHH47794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072903021.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000009.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3307"/>
    <dbReference type="EnsemblBacteria" id="SHH47794">
        <property type="protein sequence ID" value="SHH47794"/>
        <property type="gene ID" value="SAMN05444003_3307"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="2">
        <location>
            <begin position="3"/>
            <end position="451"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH47794.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="459" mass="49031" checksum="42BFA5B888DFD59F" modified="2017-03-15" version="1">MSTLTCISPIDGTVFATRECLSEAAAKEVADRARAAQCSWAARPLQERIDLVMAGVAAVGAMNDEIVPELAKMMGRPIRFGGEFGGFEERASHMASIAQDSLADIEVGEDATFKRYIKRVPHGVVFVVAPWNYPYMTAINTVAPALIAGNAVMLKHATQTLLVGERMAQAFQSAGLPEDVFQNVFLDHDTTSSLIADNAFDFINFTGSVGGGAAMERAAAGTFTGVGTELGGKDPGYVLEDADLDAAVDTLIDGAMFNSGQCCCGIERIYVHESLFDAFVEKAVSIVSDYKLGNPLDANTTLGPMAHKRFADEVRSQIAEAVAAGATAHIDTFAEDDGGAYLSPQILTNVTHDMRVMRDESFGPVVGIMPVKDDAEAVRLMNDSEFGLTASLWTKDLDRAAAVGDQIETGTVFMNRADYLDPGLCWTGCKNTGRGGGLSVIGYHNLTRPKSYHLKKVTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TCM1</accession>
    <name>A0A1M5TCM1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3325</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000011">
        <property type="protein sequence ID" value="SHH48454.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3325"/>
    <dbReference type="EnsemblBacteria" id="SHH48454">
        <property type="protein sequence ID" value="SHH48454"/>
        <property type="gene ID" value="SAMN05444003_3325"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH48454.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="26" mass="2909" checksum="AFBFDCFC1C97FDBA" modified="2017-03-15" version="1" fragment="single">MNIDKKITDDLVANDISFVTTVPCKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L0A1</accession>
    <name>A0A1M5L0A1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Predicted HD phosphohydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0027</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58494.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898354.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0027"/>
    <dbReference type="EnsemblBacteria" id="SHG58494">
        <property type="protein sequence ID" value="SHG58494"/>
        <property type="gene ID" value="SAMN05444003_0027"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006674">
        <property type="entry name" value="HD_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01966">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HD" evidence="1">
        <location>
            <begin position="53"/>
            <end position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG58494.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="197" mass="22643" checksum="6B39F5CBBF9C82E5" modified="2017-03-15" version="1">MDQVKFTQMKDGDKEDYDFLTAHEIEHTKGTADRLLKALVDLDEGLSGYQITRLGHSLQSATRAERDGADTDWVVAALLHDIGDIFAPYNHDEYAATILKPFVREQVTWVVEKHGDFQLVYYGEHVGANPEKRQAYSGHPYFDDCATFCERWDQNSFDPDYDTLPIEHFADRVREVFAREPYDPTVIRAGEREPLQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L3C9</accession>
    <name>A0A1M5L3C9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DNA-binding transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0078</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59527.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898420.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG59527">
        <property type="protein sequence ID" value="SHG59527"/>
        <property type="gene ID" value="SAMN05444003_0078"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="14"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG59527.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="319" mass="35244" checksum="AD7184471F9287E8" modified="2017-03-15" version="1">MNITAGKFTLWGVEVFVATAEEGSITAAARRLGASAATVSQQITNLEGAVGTTLLNRGARPVSLTPAGDMFLRRANTILNEASLAQAELAMADLSRLTRFRLGMIEDIDADVTPALLRELGKDLMNCHFTLETDASHRLVDGLEARALDVIVAADIGQHTDDREVHPLLVEPFFVAAPKGKVGEDVEKSLRRLPLINYTSRHYMGRLIADHLTRFNIKLRHRFELDSYAAIMAMVAQGGGWAITTPLAWKHTGRFRHEVDILPLPFGSFTRTISLTARRNVLGELPADIAERIRPLLDEMIVRPTVNDIPWLEGQLRLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L496</accession>
    <name>A0A1M5L496_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8 10">Adenylosuccinate synthetase</fullName>
            <shortName evidence="8">AMPSase</shortName>
            <shortName evidence="8">AdSS</shortName>
            <ecNumber evidence="8 10">6.3.4.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">IMP--aspartate ligase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">purA</name>
        <name evidence="12" type="ORF">SAMN05444003_0093</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8 10">
            <text>GTP + IMP + L-aspartate = GDP + 2 H(+) + N(6)-(1,2-dicarboxyethyl)-AMP + phosphate</text>
            <dbReference type="Rhea" id="RHEA:15753"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57567"/>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <dbReference type="ChEBI" id="CHEBI:58189"/>
            <dbReference type="EC" id="6.3.4.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="8">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="8 10">Purine metabolism; AMP biosynthesis via de novo pathway; AMP from IMP: step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1 8">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8 10">Belongs to the adenylosuccinate synthetase family.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.4" evidence="8 10"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898439.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0093"/>
    <dbReference type="EnsemblBacteria" id="SHG59816">
        <property type="protein sequence ID" value="SHG59816"/>
        <property type="gene ID" value="SAMN05444003_0093"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00075">
        <property type="reaction ID" value="UER00335"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004019">
        <property type="term" value="F:adenylosuccinate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044208">
        <property type="term" value="P:'de novo' AMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd03108">
        <property type="entry name" value="AdSS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.300.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.170.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00011">
        <property type="entry name" value="Adenylosucc_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018220">
        <property type="entry name" value="Adenylosuccin_syn_GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033128">
        <property type="entry name" value="Adenylosuccin_syn_Lys_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042109">
        <property type="entry name" value="Adenylosuccinate_synth_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042110">
        <property type="entry name" value="Adenylosuccinate_synth_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042111">
        <property type="entry name" value="Adenylosuccinate_synth_dom3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001114">
        <property type="entry name" value="Adenylosuccinate_synthetase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11846">
        <property type="entry name" value="PTHR11846"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00709">
        <property type="entry name" value="Adenylsucc_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00788">
        <property type="entry name" value="Adenylsucc_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00184">
        <property type="entry name" value="purA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01266">
        <property type="entry name" value="ADENYLOSUCCIN_SYN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00513">
        <property type="entry name" value="ADENYLOSUCCIN_SYN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 8 10" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="2 8 10" id="KW-0436">Ligase</keyword>
    <keyword evidence="6 8 10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 8 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 8 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 8 10" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="IMP binding" evidence="8">
        <location>
            <begin position="13"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="region of interest" description="IMP binding" evidence="8">
        <location>
            <begin position="38"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="277"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="8">
        <location>
            <begin position="299"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="11">
        <location>
            <begin position="278"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="8">
        <location>
            <position position="13"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="8">
        <location>
            <position position="41"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="141"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="12"/>
            <end position="18"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="13"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="40"/>
            <end position="42"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="40"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="130"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="144"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="224"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="239"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="303"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="305"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="331"/>
            <end position="333"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="413"/>
            <end position="415"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU000520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG59816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="430" mass="46525" checksum="2701B683BB710DEE" modified="2017-03-15" version="1">MANVVVVGAQWGDEGKGKIVDWLSERADVVARFQGGHNAGHTLVIGDDVYKLHALPSGVVRGGKLSVIGNGVVLDPWNLLKEIAGIREQGVDINPDNLIVAENTPLILPFHGELDRAREAQNSVAKIGTTGRGIGPAYEDKVGRRAIRVADLADAATLEKRVDRALLHHNALRRGLGLEEIDRASLLDQLAEIAPDLLQYAAPVWKILNEKRKAGKRILFEGAQGALLDIDFGTYPFVTSSNVIAGQAATGTGIGPGSIDFVLGIVKAYTTRVGEGPFPTELEDEDGQRLGERGHEFGTTTGRKRRCGWFDAVLVRQTCATSGVNGISLTKLDVLDGFETLKICVGYELDGDRLDYLPIAADQQARCTPIYEEMAGWNESTEGARSWADLPAQAIKYVRRIEELIDCPVALVSTSPEREDTILVTDPFAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L608</accession>
    <name>A0A1M5L608_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Proline iminopeptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0120</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase S33 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60400.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0120"/>
    <dbReference type="EnsemblBacteria" id="SHG60400">
        <property type="protein sequence ID" value="SHG60400"/>
        <property type="gene ID" value="SAMN05444003_0120"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002410">
        <property type="entry name" value="Peptidase_S33"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00793">
        <property type="entry name" value="PROAMNOPTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="50"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="domain" description="AB hydrolase-1" evidence="3">
        <location>
            <begin position="110"/>
            <end position="362"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010088"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG60400.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="376" mass="40406" checksum="A6747EC3ED48982B" modified="2017-03-15" version="1">MTNSPLQQSQKAALADLTASETPTASIEDSVIVSYNQKPIKNRIAQALKVGLIISIGVTGAFILAAIGLYFAISGQYLVSATVVDDASLPQIKINGVRLHAETYGDPSNPVIIVLHGGPGGDYRSLLGSKSLADTNFVVFYDQRGAGLSERVPAQKLTVPAYIAELDAVIDRYSPDRPVTLLGHSWGAMLATAYLGEAPEKVARAILLEPGFFNGDEAQDWMAQASQYMSGLGFYRQAAIAAIQSLHVSGPDSSAAKDYMMSEIIHRFLNHPENPYHCPGEEFDAAAWRFGATASQTAGKTGAAEIELIAQGAERYSGPVLLLASACNDWIGEDAQRAHLSYFQNGELSIVPHSGHDMIWDNPDETLPLIRAFLDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L675</accession>
    <name>A0A1M5L675_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9 11">1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase</fullName>
            <ecNumber evidence="9 11">5.3.1.16</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">hisA</name>
        <name evidence="12" type="ORF">SAMN05444003_0129</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 9 11">
            <text>1-(5-phospho-beta-D-ribosyl)-5-[(5-phospho-beta-D-ribosylamino)methylideneamino]imidazole-4-carboxamide = 5-[(5-phospho-1-deoxy-D-ribulos-1-ylimino)methylamino]-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide</text>
            <dbReference type="Rhea" id="RHEA:15469"/>
            <dbReference type="ChEBI" id="CHEBI:58435"/>
            <dbReference type="ChEBI" id="CHEBI:58525"/>
            <dbReference type="EC" id="5.3.1.16"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 9 11">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 4/9.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 9 11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 9 10">Belongs to the HisA/HisF family.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.16" evidence="9 11"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60592.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898486.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0129"/>
    <dbReference type="EnsemblBacteria" id="SHG60592">
        <property type="protein sequence ID" value="SHG60592"/>
        <property type="gene ID" value="SAMN05444003_0129"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00009"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003949">
        <property type="term" value="F:1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04732">
        <property type="entry name" value="HisA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01014">
        <property type="entry name" value="HisA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006062">
        <property type="entry name" value="His_biosynth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006063">
        <property type="entry name" value="HisA_bact_arch"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044524">
        <property type="entry name" value="Isoase_HisA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023016">
        <property type="entry name" value="Isoase_HisA-like_bact"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43090">
        <property type="entry name" value="PTHR43090"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00977">
        <property type="entry name" value="His_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="SSF51366"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00007">
        <property type="entry name" value="TIGR00007"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 9 10" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="5 9 11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 9 10" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="8 9 11" id="KW-0413">Isomerase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="9">
        <location>
            <position position="8"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="9">
        <location>
            <position position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000901"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009667"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003657"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU003658"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG60592.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="239" mass="24889" checksum="BD49D07F5E804076" modified="2017-03-15" version="1">MILYPAIDLKDGQAVRLVHGDMDQTTVFNDDPAAQAKEFVAAGCQWLHLVDLNGAFAGEPVNAAPVEAILKACPVPAQLGGGIRDLATIERWIDKGLARVILGTVAVENPDLVREAAKEFPGKVAVGLDARNGFVATRGWAEETDIQVTDLARSFEDAGIAAIIYTDILRDGAMKGPNIAATEALARAVDIPVLASGGVSSMADLTALMKTGVISGAISGRALYDGAIDLKEALATLNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LAB4</accession>
    <name>A0A1M5LAB4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Xaa-Pro aminopeptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_0191</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the peptidase M24B family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62032.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898560.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0191"/>
    <dbReference type="EnsemblBacteria" id="SHG62032">
        <property type="protein sequence ID" value="SHG62032"/>
        <property type="gene ID" value="SAMN05444003_0191"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0110165">
        <property type="term" value="C:cellular anatomical entity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070006">
        <property type="term" value="F:metalloaminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01085">
        <property type="entry name" value="APP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.350.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029149">
        <property type="entry name" value="Creatin/AminoP/Spt16_NTD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036005">
        <property type="entry name" value="Creatinase/aminopeptidase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000587">
        <property type="entry name" value="Creatinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000994">
        <property type="entry name" value="Pept_M24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033740">
        <property type="entry name" value="Pept_M24B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032416">
        <property type="entry name" value="Peptidase_M24_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001131">
        <property type="entry name" value="Peptidase_M24B_aminopep-P_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01321">
        <property type="entry name" value="Creatinase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00557">
        <property type="entry name" value="Peptidase_M24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16188">
        <property type="entry name" value="Peptidase_M24_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53092">
        <property type="entry name" value="SSF53092"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55920">
        <property type="entry name" value="SSF55920"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00491">
        <property type="entry name" value="PROLINE_PEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Creatinase_N" evidence="8">
        <location>
            <begin position="17"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M24" evidence="7">
        <location>
            <begin position="313"/>
            <end position="521"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M24_C" evidence="9">
        <location>
            <begin position="536"/>
            <end position="595"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008766"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF16188"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG62032.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="595" mass="65422" checksum="8265079636BDF5F6" modified="2017-03-15" version="1">MFQTFEATTSPDQGPPRLSNLRKHIADKGLDGFLIPRADAHQGEYVAPRDARLAWLTGFTGSAGFCAALTHIAGVFVDGRYRLQVRDQVADDFTPVDWPEVQLEDWLKEQLPNGGKVGFDPWLHTVSAIRQLTKALVDSGIELVPTDNLVDAIWSDQPEPPKAKFTAYPVEFAGETRQSKSKRLAETISAPTVLTLPDSIAWLLNIRGTDIERNPVPHAFAILNTDGHVDLFAQDGKTAEVANHLGEDVRIHPQDSFLNHISNLTGDINLDPKWCPAIVATTAAKAGLTIRHKDDPCLLPKACKNDTEIAGAKEAHLRDGAAMVRFLAWLDADAPNGSLTEIDVVKQLEQFRRETNQLLDVSFETICGAGGNGAIVHYRVTEETNRPVKRDELLLIDSGGQYIDGTTDITRTVIVGTPSELHRSCFTRVLQGMIAISRARFPKGVQGQHLDSLARFPLWTAGMDYDHGTGHGIGSYLCVHEGPQSLSRRGDVPLKEGMILSNEPGYYRTGEFGIRIENLIVTGPAPDIEGGDDRDMLSFETITYVPIDRRLIDVALLSNDERDWINGYHAETMAKIGPLIDGPAKEWLEQACAPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LBK9</accession>
    <name>A0A1M5LBK9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Hemolysin-type calcium-binding repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0207</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62421.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898590.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0207"/>
    <dbReference type="EnsemblBacteria" id="SHG62421">
        <property type="protein sequence ID" value="SHG62421"/>
        <property type="gene ID" value="SAMN05444003_0207"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.150.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028992">
        <property type="entry name" value="Hedgehog/Intein_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018511">
        <property type="entry name" value="Hemolysin-typ_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001343">
        <property type="entry name" value="Hemolysn_Ca-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036844">
        <property type="entry name" value="Hint_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011049">
        <property type="entry name" value="Serralysin-like_metalloprot_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00353">
        <property type="entry name" value="HemolysinCabind"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13403">
        <property type="entry name" value="Hint_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51120">
        <property type="entry name" value="SSF51120"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51294">
        <property type="entry name" value="SSF51294"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00330">
        <property type="entry name" value="HEMOLYSIN_CALCIUM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hint_2" evidence="2">
        <location>
            <begin position="486"/>
            <end position="624"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="381"/>
            <end position="406"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="101"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="204"/>
            <end position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13403"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG62421.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="671" mass="68073" checksum="192A0965BBDD7F57" modified="2017-03-15" version="1">MPNGTVSGTSGDDLIDASYVGDPEGDLVDNGDNTGPGGPDDDTIEAGAGNDEVYGGLGDDSISGGEGADTIFGGDGNDFLETGFGDDGDTIYGGDGDDTILDTGSTLSNDTFDGGAGNDQILGAEGNDTIIGGTGQDGMDGGGGDDVFILEDGYSDTGVPGSDVIFGGDSDETVGDVLDATAVTEDSVLTFGGGGGSSDPGDPGDPGDPDPPPDPPPDPPPDPPPDPPPDPPPDPDPDPDPETGGTGGDHLLETGANSAELTGIEQYNLGSGDDLVIDNSDGHSVHMGDGDDTFQISDDFGNDTIVGGNGGETTGDTIDGAALTQDVTVTFTSEGAGTLTNGTDTATYSEIENVTTGSGNDTITGNSGSSTFISGDGNDQISTGQGSDTVDAGAGNDTIFANEGDSISAGSGDDIIDIDDLGESTNGTITIDGGSGDETIGDTLALGGIADMSTLSTTDDGTGSLSGSVTLFDGTIVNFSEIENVICFTPGAMIATPNGARDIADLRVGDLVITRDHGLQPIRWIQSRTVHAISKFAPIRIRPGVITGLQKDLLVSPQHRMLFQGYRAELLFGESEVLVAAKHLVDGKAVTQDEGGHVTYIHMMFAQHEIVYADGAATESFHPGAQGVDAVTDAAREELFTLFPDLRADLKGYGDTARRCLKKHETKLLNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LCN8</accession>
    <name>A0A1M5LCN8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Amino acid/amide ABC transporter membrane protein 1, HAAT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0224</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62874.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898627.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0224"/>
    <dbReference type="EnsemblBacteria" id="SHG62874">
        <property type="protein sequence ID" value="SHG62874"/>
        <property type="gene ID" value="SAMN05444003_0224"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="20"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="111"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="203"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="249"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="282"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="335"/>
            <end position="357"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG62874.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="372" mass="40464" checksum="6F53DAB0A7DA8EA7" modified="2017-03-15" version="1">MEEIIQQVVNGLDRGSAYALIALGLTLIFGTLGVVNFAHGALFMIGAFVAVLMSDVLGDIREIGSADDFFKLVQVVEDPTQTDFLGRPLAVETSYWVIWFGESFGNWLSDWAVPIAVLVSIPIMIFIGWAMERGLIRHFYHRPHADQILVTFGLAIVLGDLIRAMYGANPIQTPMPDALNGPVDLGVYLGYEASTITYSAWRIVYFFFSMFIIAGVFAFLQFTTFGMVVRAGMADRETVGLLGIDINRYFTMMFGLAAAVAGVAGVMFAPIQAPSYNLGMEYLVPCFVVVVVGGMGSLGGAVLAGFLLGIVQSFASLPTWKNNLVEWLGLDDSNLIANLIIGVDQIAIYLIAIIILLTRPRGLMGRKGVMED</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LFS4</accession>
    <name>A0A1M5LFS4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative N6-adenine-specific DNA methylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0269</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63921.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898700.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0269"/>
    <dbReference type="EnsemblBacteria" id="SHG63921">
        <property type="protein sequence ID" value="SHG63921"/>
        <property type="gene ID" value="SAMN05444003_0269"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000241">
        <property type="entry name" value="RNA_methylase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01170">
        <property type="entry name" value="UPF0020"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01261">
        <property type="entry name" value="UPF0020"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="UPF0020" evidence="1">
        <location>
            <begin position="191"/>
            <end position="202"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG63921.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="369" mass="40296" checksum="5482D5DFBA9F53F1" modified="2017-03-15" version="1">MSKPFEIFAATVPGMETTLQEEAIEKGFKHAKAVPGGIAFLGHWTSVWRANLHLRGATRILARIGQFRAYHLAELNRRASEFDWSTVLKVGESVHVEVTTRNSKIYHQSAAAERIENAIRTQLRCPIVREASGGIRVRIENNICTLSVDTSGEPLHKRGAKAFVGKAPMRETLASLFLRHCGYSGDEPVFDPMCGSGTFVLEAAEIASGLAPGRNRDFAFQRLASFQPERWKAMLADLTQQTTPFVFTGSDRDEGAIKGALANAQRAGIEDCTRFKCQSFSDALPPDGPPGLVMINPPYGDRIGNKRQLFGLYGALGKQLSTHFKGWRVGLVTTDGGLAKAMGLPFKPTDAPIPNGGLRVTLYQTNPLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LID8</accession>
    <name>A0A1M5LID8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Sulfite reductase (NADPH) hemoprotein beta-component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_0308</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64807.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898751.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0308"/>
    <dbReference type="EnsemblBacteria" id="SHG64807">
        <property type="protein sequence ID" value="SHG64807"/>
        <property type="gene ID" value="SAMN05444003_0308"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.413.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005117">
        <property type="entry name" value="NiRdtase/SiRdtase_haem-b_fer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036136">
        <property type="entry name" value="Nit/Sulf_reduc_fer-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006067">
        <property type="entry name" value="NO2/SO3_Rdtase_4Fe4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045169">
        <property type="entry name" value="NO2/SO3_Rdtase_4Fe4S_prot"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045854">
        <property type="entry name" value="NO2/SO3_Rdtase_4Fe4S_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11493">
        <property type="entry name" value="PTHR11493"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01077">
        <property type="entry name" value="NIR_SIR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03460">
        <property type="entry name" value="NIR_SIR_ferr"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55124">
        <property type="entry name" value="SSF55124"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56014">
        <property type="entry name" value="SSF56014"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NIR_SIR_ferr" evidence="5">
        <location>
            <begin position="52"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="domain" description="NIR_SIR" evidence="4">
        <location>
            <begin position="119"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="domain" description="NIR_SIR_ferr" evidence="5">
        <location>
            <begin position="328"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="domain" description="NIR_SIR" evidence="4">
        <location>
            <begin position="409"/>
            <end position="544"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF03460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG64807.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="555" mass="61964" checksum="6DF9C06FAC2A1FED" modified="2017-03-15" version="1">MYKYDDFDEAFVRERVAQFRGQVERRVDGSLTEDEFKPFRLMNGLYLQLHAYMLRVAIPYGTLNSRQMNQLAFIAEKWDKGYGHFTTRQNIQYNWPKLPDVPDMLEALADVEMHAIQTSGNTIRNVTADHFAGAAGDEIADPRPVAELLRQWSTDHPEFQALPRKFKIAVSGAENDRAVLRAHDVAVQIVEKDGQRGYRIFVGGGLGRTPMIGKVLRDFLPEADLLPYVEAVVSVWNLLGRRDNKYKARIKITVHEHGIEEISERVEQRFAEIRPSFTGVDQKLFAEIKEHFAEPAYKSSATDAFDAYKAANPAFQSWADTNLAEHKNSEYAIVSISLKSHGATPGDASSEQMRTMADLALRLGHDELRISHEQNVILPHVHKSDLPEIYNTLREEGLATANIGLISDIIACPGMDYCALATARSIPIAQEIATRFDELKLEHEVGLLKIKISGCINACGHHHVGHIGILGLDRAGVENYQITLGGDGTEDAAIGERAGPGFSADEIIPAIERLVLGYLDIRDSADETFLQTYRRLGMEPFKAILYPEKAEANAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LJ64</accession>
    <name>A0A1M5LJ64_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein RodZ, contains Xre-like HTH and DUF4115 domains</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0328</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65184.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900359.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0328"/>
    <dbReference type="EnsemblBacteria" id="SHG65184">
        <property type="protein sequence ID" value="SHG65184"/>
        <property type="gene ID" value="SAMN05444003_0328"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025194">
        <property type="entry name" value="DUF4115"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13464">
        <property type="entry name" value="DUF4115"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4115" evidence="1">
        <location>
            <begin position="288"/>
            <end position="361"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG65184.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="395" mass="42072" checksum="83AC0536FB122A85" modified="2017-03-15" version="1">MIVKGFRRTDVAEDVQPAGFDDFDLRLGDLMRGERATMGKSLLDVQRELKIKAAYIAAIENADPSAFDTPGFIAGYVRSYARYLNMDPEWAFEKFCNESGFVTAHGMSAEASSNKRKNEAIAVNPPGKDIFAAPATPFIPTGEARFSTIEPSAIGSLAVLAVLVCGLGYGGWSVLQEVQKVQLAPVEQTPQVISSLDPLAGGAGILEPEEDRLALNAPSTDALDRLYRPQPLDVPVLVARDAPISTLNPGSFGVIEPITGVDAALAEAVANPVEPTPIQVNETPVPEVQLVAVRPAWVRVRSADGTIIFEGTMNAGDTFALPQTEEPATLRVGESGAMYFAVNGEHFGPAGPQGTLTKNLPLDSESLVAAYEPADLDRDDDLAEIIRLAQLAVSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LPP3</accession>
    <name>A0A1M5LPP3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0407</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66926.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898894.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0407"/>
    <dbReference type="EnsemblBacteria" id="SHG66926">
        <property type="protein sequence ID" value="SHG66926"/>
        <property type="gene ID" value="SAMN05444003_0407"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="3"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG66926.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="127" mass="14540" checksum="F333FD54F31CE007" modified="2017-03-15" version="1">MSRLEHVNITVSDTHKTAQMLNAIFGWHVRWEGASIDNGYSMHVGEEDTYLALYAGPNEQKVTEDDASYGTRGGLNHLGVVVDDLDAVEERVKAYGFEPHFHADYEPGRRFYFYDHDRIEIEVVEYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LRI0</accession>
    <name>A0A1M5LRI0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0436</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67605.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898930.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0436"/>
    <dbReference type="EnsemblBacteria" id="SHG67605">
        <property type="protein sequence ID" value="SHG67605"/>
        <property type="gene ID" value="SAMN05444003_0436"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002161">
        <property type="term" value="F:aminoacyl-tRNA editing activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.960.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036754">
        <property type="entry name" value="YbaK/aa-tRNA-synt-asso_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007214">
        <property type="entry name" value="YbaK/aa-tRNA-synth-assoc-dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04073">
        <property type="entry name" value="tRNA_edit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55826">
        <property type="entry name" value="SSF55826"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="tRNA_edit" evidence="1">
        <location>
            <begin position="27"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG67605.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="158" mass="16728" checksum="01482D18AA4A72EF" modified="2017-03-15" version="1">MSKSLKRVKAALRDAGLNIEPMEMPNESRTAQQAADAAGCELDQIAKSVILQDGETGTCYLFLTAGGNQVDAVLASDTAGTKLSKADAAAIRAHTGFAIGGVSPLGHLNPITAYMDPRLMDFDVIYAAAGTPRHIFPINPSKLADIIDADVREFTEPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LV51</accession>
    <name>A0A1M5LV51_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">5-methyltetrahydrofolate--homocysteine methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_0493</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68891.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899018.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0493"/>
    <dbReference type="EnsemblBacteria" id="SHG68891">
        <property type="protein sequence ID" value="SHG68891"/>
        <property type="gene ID" value="SAMN05444003_0493"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003726">
        <property type="entry name" value="HCY_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036589">
        <property type="entry name" value="HCY_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02574">
        <property type="entry name" value="S-methyl_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82282">
        <property type="entry name" value="SSF82282"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50970">
        <property type="entry name" value="HCY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1 3 6" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3 6" id="KW-0808">Transferase</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Hcy-binding" evidence="5">
        <location>
            <begin position="4"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="296"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="302"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="213"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="279"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="280"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00333"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG68891.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="338" mass="35679" checksum="A381FF8BE76A87CC" modified="2017-03-15" version="1">MTENPLSKLLLLRDWLLADGATGTNLFNTGLESGDAPEFWNVDHPEKITALYKGSVDAGSDLFLTNTFGGNASRLKLHGGEARVHELNKAGAEIGREVADQSGRPIIVAGSVGPTGEIMAPMGSLTHEIAVEMFHEQAEGLKAGGADVLWVETISAIEEFRAAAEAFALADMPWCGTMSFDTAGRTMMGLTSKDMTKQVGKIDNAPVAFGANCGVGASDLLRTVIGFKKAGANIPVIAKGNAGIPKYHDGHIHYDGTPELMADYAVLARDCGATIIGGCCGTTPDHLRAMREALETRPRGETPSLDQITTALGGFSSESDGTDDKAPKRPARRGRRRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LXS6</accession>
    <name>A0A1M5LXS6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ATP-binding cassette, subfamily F, member 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0539</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899078.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0539"/>
    <dbReference type="EnsemblBacteria" id="SHG69902">
        <property type="protein sequence ID" value="SHG69902"/>
        <property type="gene ID" value="SAMN05444003_0539"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032781">
        <property type="entry name" value="ABC_tran_Xtn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12848">
        <property type="entry name" value="ABC_tran_Xtn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="6">
        <location>
            <begin position="2"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="6">
        <location>
            <begin position="310"/>
            <end position="524"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="517"/>
            <end position="537"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="540"/>
            <end position="602"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="34"/>
            <end position="41"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="342"/>
            <end position="349"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG69902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="616" mass="69017" checksum="1938F4CF409382AB" modified="2017-03-15" version="1">MLRLTDITYSIEGRTLIENANVVIPTGHKVGLVGRNGTGKTTLFRIIRGEMILDTGDVDIPRGWKIGGVSQEVPGNEITLIDTVLSADIERSALMEEAETATDPGRIADIQTRLTDIDAWSAEARASSILKGLGFTDAEQKMPCSAFSGGWRMRVALAAVLFSEPDLLLLDEPTNYLDLEGALWLESYLVRYPHTVLIVSHDRELLNRSVGGILHLEDKDLTYYTGPYDQFARQRAEKRALQASQAKKQAEKRAHLQAFVDRFKAKASKAKQAQSRVKMLEKMETIRAPEDAARTVFTFPKPEELSPPIIATEGVGVGYDETIVLDRLNLRIDQDDRIALLGRNGEGKSTLSKLLSGRLDAAHGRLSKSKKLRIGFFAQHQVEELSVDETPLQHLRRERPDEQESKLRARMAGFGLGPDQAETEVGRLSGGQKARLSLLLATLPAPHLLILDEPTNHLDIESREALVEALTAYTGAVILVSHDMHLLSMVADRLWLVRDGRVAPYEDDLQAYRKMLLTPDKPQKTQEPKPKKSKPSRDVLLQLKAEVRKCEERVNKINEMRDKLATKLADPELYEDTRIGELEMWNKKYAELMEAVDRAEGLWMTALEKLEEAQAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LYX0</accession>
    <name>A0A1M5LYX0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 9">Cysteine desulfurase</fullName>
            <ecNumber evidence="5 9">2.8.1.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_0557</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.</text>
    </comment>
    <comment type="function">
        <text evidence="3">Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Seems to participate in the biosynthesis of the nitrogenase metalloclusters by providing the inorganic sulfur required for the Fe-S core formation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>[sulfur carrier]-H + L-cysteine = [sulfur carrier]-SH + L-alanine</text>
            <dbReference type="Rhea" id="RHEA:43892"/>
            <dbReference type="Rhea" id="RHEA-COMP:14737"/>
            <dbReference type="Rhea" id="RHEA-COMP:14739"/>
            <dbReference type="ChEBI" id="CHEBI:29917"/>
            <dbReference type="ChEBI" id="CHEBI:35235"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="ChEBI" id="CHEBI:64428"/>
            <dbReference type="EC" id="2.8.1.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 8">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="4 9">Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.8.1.7" evidence="5 9"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70304.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899103.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0557"/>
    <dbReference type="EnsemblBacteria" id="SHG70304">
        <property type="protein sequence ID" value="SHG70304"/>
        <property type="gene ID" value="SAMN05444003_0557"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031071">
        <property type="term" value="F:cysteine desulfurase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006534">
        <property type="term" value="P:cysteine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06453">
        <property type="entry name" value="SufS_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000192">
        <property type="entry name" value="Aminotrans_V_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020578">
        <property type="entry name" value="Aminotrans_V_PyrdxlP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010970">
        <property type="entry name" value="Cys_dSase_SufS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016454">
        <property type="entry name" value="Cysteine_dSase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00266">
        <property type="entry name" value="Aminotran_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005572">
        <property type="entry name" value="NifS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01979">
        <property type="entry name" value="sufS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00595">
        <property type="entry name" value="AA_TRANSFER_CLASS_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 9" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_5" evidence="10">
        <location>
            <begin position="25"/>
            <end position="395"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00003120"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00013558"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004504"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU004506"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG70304.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="407" mass="44154" checksum="B50182CD0C3814F3" modified="2017-03-15" version="1">MTFDVQKIRADFPILSREVNGKPLVYLDNGASAQKPQCVIDAVTRGYAEEYANVHRGLHYLSNLATDKYEAVRGTITKFLNAKSEDNIVLNSGTTEGINMVAYSWAMPRFKAGDEIVLSIMEHHANIVPWHFLRERIGVVLKWVDVDANGDLDPQAVLDAIGPKTKLVAITHMSNVLGTVVDVKAITTGAHEQGVPVLVDGSQAAVHLPVDVQDIGCDFYAITGHKLYGPSGSGAIYVAPERMKEMRPFIGGGDMIRDVRRDGVDYNDAPMKFEAGTPGIVQTIGLGVALDYMMEIGLSNIAAHELELRDYAQSKFAGLNWLNVQGNSVTKGAIFSLSIEGAAHAHDISTVLDKRGVAVRAGTHCAMPLMEHMGVSATCRASFGMYNTTDEVDVLIDALELCHELFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LZF1</accession>
    <name>A0A1M5LZF1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Peptidase_S15 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0546</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899087.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0546"/>
    <dbReference type="ESTHER" id="9rhob-a0a1m5lzf1">
        <property type="family name" value="Atu1826-like"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG70059">
        <property type="protein sequence ID" value="SHG70059"/>
        <property type="gene ID" value="SAMN05444003_0546"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000383">
        <property type="entry name" value="Xaa-Pro-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02129">
        <property type="entry name" value="Peptidase_S15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_S15" evidence="1">
        <location>
            <begin position="17"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02129"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG70059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="217" mass="24394" checksum="ACC4AE331CCA0E4C" modified="2017-03-15" version="1">MPEVIFPGPEGRLEGRYHPQRDRDAPIAIILHPHPQFGGTMNNRVVYNLHYAFHEMGFTCLRFNFRGVGRSQGEYDQGVGELSDAASALDYLQSMNSNSKHCWVAGFSFGAWIGMQLLMRRPEITGFISVSPPANMYDFSFLAPCPSSGLIINGSNDRVAPPADTVNLVNKLHEQKGITITHTEMEGAGHFFEDPYMDPMIENVQAYVRRRLTENTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LZP0</accession>
    <name>A0A1M5LZP0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF853 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0566</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70475.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899117.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0566"/>
    <dbReference type="EnsemblBacteria" id="SHG70475">
        <property type="protein sequence ID" value="SHG70475"/>
        <property type="gene ID" value="SAMN05444003_0566"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033186">
        <property type="entry name" value="HerA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05872">
        <property type="entry name" value="DUF853"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF853" evidence="3">
        <location>
            <begin position="16"/>
            <end position="508"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="461"/>
            <end position="481"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="424"/>
            <end position="458"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="463"/>
            <end position="481"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF05872"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG70475.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="512" mass="55398" checksum="E9649755BDBE655B" modified="2017-03-15" version="1">MADSIFVGGGAEGYATPQHLRLDKSNRHGLIAGATGTGKTVTLQILAEGFSANGIPVFLSDVKGDLSGLAASGTETFKLHDAFTKRAKTIGLDLDYSGFPVTFWDLFGEQGHPIRTTVAEMGPLLLSRLLELTDVQEGVLNVAFRVADEEGLPLLDLKDLQAMLVWVGQNAKDLSLRYGNVSASSVGAIQRQLLVLENQGGTSLFGEPALDLSDIIRCNDDGRGAINILASDKLMGSPRLYATFLLWLLSELFEELPEVGNPDKPKLVFFFDEAHLLFDDAPKALVDKVEQVARLIRSKGVGVFFVTQNPADVPEDVLGQLGNRIQHALRAFTAKDRKELKQAAETYRENPAFDTSEAIQEVGTGEAVTSFLDDDGIPSIVERTLIRPPSSQLGPLDSISRAAIMRASPMAGKYDERLDHESAFELLKERANQAAEAAEKAEAEEEAAEAELREFKKARRYNGSQVGRSSSRKSSSPDSLSDALTQAVVKELGGTTGRRLVRGLLGGLFKGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M330</accession>
    <name>A0A1M5M330_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">RNA-binding protein Hfq</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">hfq</name>
        <name evidence="3" type="ORF">SAMN05444003_0616</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homohexamer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the Hfq family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG71675.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899168.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0616"/>
    <dbReference type="EnsemblBacteria" id="SHG71675">
        <property type="protein sequence ID" value="SHG71675"/>
        <property type="gene ID" value="SAMN05444003_0616"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01716">
        <property type="entry name" value="Hfq"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00436">
        <property type="entry name" value="Hfq"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005001">
        <property type="entry name" value="Hfq"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010920">
        <property type="entry name" value="LSM_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34772">
        <property type="entry name" value="PTHR34772"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17209">
        <property type="entry name" value="Hfq"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50182">
        <property type="entry name" value="SSF50182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02383">
        <property type="entry name" value="Hfq"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="1 2" id="KW-0346">Stress response</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00436"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG71675.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="77" mass="8628" checksum="FF853E2AD8BC327D" modified="2017-03-15" version="1">MASDKANLQDAFLNHVRKTKVPVTIFLVNGVKLQGVITWFDSFCVLLRRDGQSQLVYKSAISTIMPAQPISLYEGEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M3M2</accession>
    <name>A0A1M5M3M2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0624</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG71897.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899181.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0624"/>
    <dbReference type="EnsemblBacteria" id="SHG71897">
        <property type="protein sequence ID" value="SHG71897"/>
        <property type="gene ID" value="SAMN05444003_0624"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032823">
        <property type="entry name" value="BCA_ABC_TP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12399">
        <property type="entry name" value="BCA_ABC_TP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="2"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="34"/>
            <end position="41"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG71897.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="261" mass="28292" checksum="86A58FDC9A066BC0" modified="2017-03-15" version="1">MIVVENLVKTFGGFRAVDGASLSIEEGTITGLIGPNGAGKTTLFNVIAGVLSPTEGRVTMQGEDITGLPPHTLFDKGLLRTFQIAHEFSSMTVRENLMMVPGGQSGEALWNAWFGRKRIADEERALLAKADEVLEFLTIDHLKDEKAGNLSGGQKKLLELGRTMMVDAKIVFLDEVGAGVNRTLLNTIGDAILRLNKERGYTFVVIEHDMDFIGRLCDPVICMAEGKVLAEGTLEEIKANEQVIEAYLGTGLKNKDQVATA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M5N6</accession>
    <name>A0A1M5M5N6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">HupE / UreJ protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0654</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72634.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899237.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0654"/>
    <dbReference type="EnsemblBacteria" id="SHG72634">
        <property type="protein sequence ID" value="SHG72634"/>
        <property type="gene ID" value="SAMN05444003_0654"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032809">
        <property type="entry name" value="Put_HupE_UreJ"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13795">
        <property type="entry name" value="HupE_UreJ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013087361" evidence="2">
        <location>
            <begin position="27"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="230"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="259"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="294"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="327"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="370"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="394"/>
            <end position="416"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="423"/>
            <end position="440"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG72634.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="445" mass="47419" checksum="E71012B648DF1889" modified="2017-03-15" version="1">MTKVTVTKVLSSCVALFFTLASMAQAHEVLPSIADMTRTDDGLVFDVELNLESFIAGIDQASTLDTNDAAEAEFYDELRALEPAELDAAFQEFWPDMASKINVIVDGTRGEPELTEVTAAEVGNFELPRNSQIQFVVPLSDDADKVAVGWAPEFGALVLRQMGVDAPYDGFLEAGSSSPEVSLAGGDQASGWQTFVNYIPVGFDHIVPKGLDHILFVLGLFFLSTRMGPLLWQISAFTLAHTITLALAALGYVNLSGTLFGGSIETIVVVEALIALSIVYVAIENLFTEGLSPWRPFIIFGFGLLHGLGFASVLAEFGLPQNSFIPALIGFNIGVEIGQIAVVAVAYLIVMKAVSLDKTGTASKMTAAGYLAVMVVLMALIIPVSGWANGSDVIILIVTAAILLGLSAASSVVGRYDSYREMVAMPGSILIGVVAVYWCVERLFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M737</accession>
    <name>A0A1M5M737_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Polyisoprenoid-binding protein YceI</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0673</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73096.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899273.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG73096">
        <property type="protein sequence ID" value="SHG73096"/>
        <property type="gene ID" value="SAMN05444003_0673"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.128.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007372">
        <property type="entry name" value="Lipid/polyisoprenoid-bd_YceI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036761">
        <property type="entry name" value="TTHA0802/YceI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04264">
        <property type="entry name" value="YceI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00867">
        <property type="entry name" value="YceI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101874">
        <property type="entry name" value="SSF101874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012002446" evidence="1">
        <location>
            <begin position="20"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="domain" description="YceI" evidence="2">
        <location>
            <begin position="23"/>
            <end position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00867"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG73096.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="187" mass="19979" checksum="530490D2B65717CE" modified="2017-03-15" version="1">MNKISSLCFLTLFATQVAAAPQSYDLNLSESRIDFTYDLQGSEFAGEIPISNADVALDFQDLSNSDISVTFNVSGVSTGFGPLTEAIKSESVLATGQFPTATFRSGSIVQNGTKAQLNGQLTLRGTTQPVTLNAEIFRQRGSEVGDLSELIVLITGSFDRHAFGASGYSGLVDPEIELRVVTTLDRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M7T4</accession>
    <name>A0A1M5M7T4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0663</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72853.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG72853">
        <property type="protein sequence ID" value="SHG72853"/>
        <property type="gene ID" value="SAMN05444003_0663"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013177843" evidence="1">
        <location>
            <begin position="19"/>
            <end position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG72853.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="40" mass="4001" checksum="792D8F0EFA5E9BE5" modified="2017-03-15" version="1">MKYLILSAVILTSACTPARIAGQAAVTTGQVVLGAADLVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MAA8</accession>
    <name>A0A1M5MAA8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Thiamine-phosphate pyrophosphorylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0723</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899367.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0723"/>
    <dbReference type="EnsemblBacteria" id="SHG74175">
        <property type="protein sequence ID" value="SHG74175"/>
        <property type="gene ID" value="SAMN05444003_0723"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00564">
        <property type="entry name" value="TMP_TenI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036206">
        <property type="entry name" value="ThiamineP_synth_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022998">
        <property type="entry name" value="ThiamineP_synth_TenI"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02581">
        <property type="entry name" value="TMP-TENI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51391">
        <property type="entry name" value="SSF51391"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TMP-TENI" evidence="1">
        <location>
            <begin position="10"/>
            <end position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02581"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG74175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="207" mass="22225" checksum="89B88A8653AE29F8" modified="2017-03-15" version="1">MTDAAEQPQIYLITPSDFDLSTYPTTLARCLDATPVACVRLILGTNEEDKVIRAADALREVTQARDVALVIDTHVQMVERLGLDGVHLSDGARSVLKVRKELGDDAIVGAYCGNSSHDGMTAGELGADYIAFGPTGESALGGGDLAPLDLFQWWSQMIEVPVVAEGALTDQLISEFSPFTDFFGIGDEIWTSDNPESRLLDFVAAMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MAW3</accession>
    <name>A0A1M5MAW3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein N-acetyltransferase, RimJ/RimL family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0732</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74412.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0732"/>
    <dbReference type="EnsemblBacteria" id="SHG74412">
        <property type="protein sequence ID" value="SHG74412"/>
        <property type="gene ID" value="SAMN05444003_0732"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13302">
        <property type="entry name" value="Acetyltransf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="17"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13302"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG74412.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="181" mass="19836" checksum="8E4EE825A2F9D41C" modified="2017-03-15" version="1">MMHETVTNPQATINAERFVLRPLKASDTGLITMYSSDEKLARGTRSIPHPLPPGTVEAQIARANDPDVPEDIWALDGTASGHAEVLGLISLTRMDRNQSEVFYWIAPAFWNVGFATEAVKTVLAANPHKADHYFAEAFQDNPGSARVLTNCGFDYLGDAEAFSVARNAVVPTWTYTLKTEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MCI0</accession>
    <name>A0A1M5MCI0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Spermidine/putrescine import ATP-binding protein PotA</fullName>
            <ecNumber evidence="8">7.6.2.11</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">potA</name>
        <name evidence="10" type="ORF">SAMN05444003_0758</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">The complex is composed of two ATP-binding proteins (PotA), two transmembrane proteins (PotB and PotC) and a solute-binding protein (PotD).</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.</text>
    </comment>
    <dbReference type="EC" id="7.6.2.11" evidence="8"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74976.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899417.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0758"/>
    <dbReference type="EnsemblBacteria" id="SHG74976">
        <property type="protein sequence ID" value="SHG74976"/>
        <property type="gene ID" value="SAMN05444003_0758"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015417">
        <property type="term" value="F:ABC-type polyamine transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005893">
        <property type="entry name" value="Sp_pt_ABC_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013611">
        <property type="entry name" value="Transp-assoc_OB_typ2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08402">
        <property type="entry name" value="TOBE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01187">
        <property type="entry name" value="potA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 7 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-1278">Translocase</keyword>
    <keyword evidence="1 8" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="9">
        <location>
            <begin position="11"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="44"/>
            <end position="51"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU364083"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG74976.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="366" mass="40661" checksum="B43E0F348FF863D2" modified="2017-03-15" version="1">MTDTAVDEAFVQFDRVQKSYDGEILVVKDLNLSMPKGEFLTMLGPSGSGKTTCLMMLAGFETATHGEILLDGQPINNIPPHKRGIGMVFQNYALFPHMTVAENLAFPLEVRKMGKSERDQKVKRALDMVQMGDFGGRRPAQLSGGQQQRIALARALVFEPELVLMDEPLGALDKQLREHMQFEITRLAHDLGITTVYVTHDQTEALTMSDRVAVFEDGRIQQLAPPDELYEEPANSFVAQFIGENNTLLGEIVEVGTDSCVVKLDSGELIDALPVNVSNVGDRTKVSIRPERVEFNKDRLNPNAHTIKAEVKEFIYMGDIFRFRLSVAGNDDFIVKTRNAPDAVKLTPGETIEIGWLPQDCRALDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MFH9</accession>
    <name>A0A1M5MFH9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Dimethylsulfoniopropionate demethylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0803</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75971.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899476.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0803"/>
    <dbReference type="EnsemblBacteria" id="SHG75971">
        <property type="protein sequence ID" value="SHG75971"/>
        <property type="gene ID" value="SAMN05444003_0803"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028896">
        <property type="entry name" value="GCST/YgfZ/DmdA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013977">
        <property type="entry name" value="GCV_T_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006222">
        <property type="entry name" value="GCV_T_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029043">
        <property type="entry name" value="GcvT/YgfZ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027266">
        <property type="entry name" value="TrmE/GcvT_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43757">
        <property type="entry name" value="PTHR43757"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01571">
        <property type="entry name" value="GCV_T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08669">
        <property type="entry name" value="GCV_T_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101790">
        <property type="entry name" value="SSF101790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GCV_T" evidence="1">
        <location>
            <begin position="33"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="domain" description="GCV_T_C" evidence="2">
        <location>
            <begin position="301"/>
            <end position="360"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG75971.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="366" mass="40894" checksum="B8831A93E00128ED" modified="2017-03-15" version="1">MAMISQSRRLRRTPFSDGVEAAGVKAYTVYNRMLLPTVFRSPVEDYRHLKTAVQVWDVAVERQVELRGPDASRLMQMLTPRDLRGMMPGQCYYVPMVDETGGMLNDPVALKLSEDRWWVSIADSDLLLWIKGLAYGYRLDVLIDEPDVSPLAVQGPLADDLMERVFGDGVRSIKFFRFGWFDFNGHSFVVARSGYSKQGGFEIYVEGTQNGMPLWNALMEAGKDLDVYAGCPNLIERIEGGLLSYGNDMTRENTPHECGLGRFCSTQTAIGCVGRDALLRVSKEGPVKEIRAIRIEGELPSCDRVWPLMDGDNQVGQVTSAAYSPDFETNVAIGMVRMTHWDPATDLDVITPAGIFPAIVNETFWI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MKD9</accession>
    <name>A0A1M5MKD9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="10">ATP-binding cassette, subfamily B, multidrug efflux pump</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_0875</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77716.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899580.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0875"/>
    <dbReference type="EnsemblBacteria" id="SHG77716">
        <property type="protein sequence ID" value="SHG77716"/>
        <property type="gene ID" value="SAMN05444003_0875"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221">
        <property type="entry name" value="PTHR24221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="38"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="81"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="162"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="186"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="261"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="301"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="41"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="361"/>
            <end position="600"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="394"/>
            <end position="401"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG77716.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="610" mass="67623" checksum="6E2E3A0BE9898C64" modified="2017-03-15" version="1">MFRKFENLVDPFVARKRDTPPSDLWAYIRSQLTPFRKWLPWMALTGFLVAIMESGLVFYSGRLIDLMTEAGPSAFWAEHNVEVIIVALLILFLRPLVITFNHLFLEQTLASNMQEQARWRAHRHMLGQSSGFFQNDFAGRLSNRVMQIGPAIEDSTYMAFEGIWYAFTYVVGATLVLSQIDYRLGIPMMIWLVLYIFYVKYIAVRVAVASEKWSDARSMVNGRVVDAYTNIETVKLFAHGEREEAYALSAMKRLRLRFQRFLRLMTELSFGLNALNGLLMVGVLGPAVWLWTNGLITVGEVAAASALVIRLNGMSGWIMWVVIRLFEHAGTMRESLQSIAVEQDVVDKDDAQPLQITDAAIEIDNLVHHYGKTCGGLDGVSLSIPAGQKVGLIGRSGAGKSSLVNLLLRFRDAEGGSIKIDGQSVADVTQDSLRQQIGMVTQDSSLLHRSVRANIMYGKPEASEADMITAATRAEAHSFIQDLADPEGRTGYNAQVGERGVKLSGGQRQRIAIARVMLKNAPILILDEATSALDSEVEAAIQKTLYGMMEGKTVIAIAHRLSTIAQMDRIVVLDEGRVVEDGTHDQLLAAGGLYADLWTRQSGGFLANDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5ML53</accession>
    <name>A0A1M5ML53_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Peptidyl-prolyl cis-trans isomerase</fullName>
            <shortName evidence="2">PPIase</shortName>
            <ecNumber evidence="2">5.2.1.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0886</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>[protein]-peptidylproline (omega=180) = [protein]-peptidylproline (omega=0)</text>
            <dbReference type="Rhea" id="RHEA:16237"/>
            <dbReference type="Rhea" id="RHEA-COMP:10747"/>
            <dbReference type="Rhea" id="RHEA-COMP:10748"/>
            <dbReference type="ChEBI" id="CHEBI:83833"/>
            <dbReference type="ChEBI" id="CHEBI:83834"/>
            <dbReference type="EC" id="5.2.1.8"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the cyclophilin-type PPIase family.</text>
    </comment>
    <dbReference type="EC" id="5.2.1.8" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77965.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899600.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0886"/>
    <dbReference type="EnsemblBacteria" id="SHG77965">
        <property type="protein sequence ID" value="SHG77965"/>
        <property type="gene ID" value="SAMN05444003_0886"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000413">
        <property type="term" value="P:protein peptidyl-prolyl isomerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.100.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029000">
        <property type="entry name" value="Cyclophilin-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020892">
        <property type="entry name" value="Cyclophilin-type_PPIase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002130">
        <property type="entry name" value="Cyclophilin-type_PPIase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044666">
        <property type="entry name" value="Cyclophilin_A-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45625">
        <property type="entry name" value="PTHR45625"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00160">
        <property type="entry name" value="Pro_isomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00153">
        <property type="entry name" value="CSAPPISMRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50891">
        <property type="entry name" value="SSF50891"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00170">
        <property type="entry name" value="CSA_PPIASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50072">
        <property type="entry name" value="CSA_PPIASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0697">Rotamase</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5011834215" description="Peptidyl-prolyl cis-trans isomerase" evidence="2">
        <location>
            <begin position="18"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="domain" description="PPIase cyclophilin-type" evidence="3">
        <location>
            <begin position="19"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU363019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG77965.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="181" mass="19033" checksum="286E907010E6D24E" modified="2017-03-15" version="1">MYKLAAAFAVLASPALATGLEIDIEGEANGTIVVDLFEDTAPLHVAQITSIAEGGEYDGVVFHRVIDGFMAQTGDVEFGQLGGDMRLAGRGGSSLPDIPAEFSDQNFDRGIIGMARAQNPNSANSQFFIMFEEGPFLNGQYTIIGEVTSGMDIVDQIKRGTGANGAVVGQPDVMTAVRVTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MPB2</accession>
    <name>A0A1M5MPB2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, IclR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0921</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78749.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899646.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0921"/>
    <dbReference type="EnsemblBacteria" id="SHG78749">
        <property type="protein sequence ID" value="SHG78749"/>
        <property type="gene ID" value="SAMN05444003_0921"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014757">
        <property type="entry name" value="Tscrpt_reg_IclR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005471">
        <property type="entry name" value="Tscrpt_reg_IclR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01614">
        <property type="entry name" value="IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51077">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51078">
        <property type="entry name" value="ICLR_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH iclR-type" evidence="3">
        <location>
            <begin position="12"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="domain" description="IclR-ED" evidence="4">
        <location>
            <begin position="75"/>
            <end position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG78749.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="258" mass="28891" checksum="3791B619CB80F975" modified="2017-03-15" version="1">MADDSFESPGQIPTNLRLLVLVEEVAKAGAPVTPTKVNEVLCLPKPSLHRLFATAEAEGFLQRDVDGRSYSPGPRARRLAIDTISSERIRTVRVAILKALAVQVEETCNLAIPEREGMFYLDRVETHWPLRIQLPIGTEVPFHCTASGKMYLSSMRSDYLMRFLKNHRMDKLTDKTITNPDLLKLELEGIRARGYATDDEEFMEGMTALAVPVLDSRGRLLSTLSIHAPEQRKTINDLVMVLAPLREAAAQLAELLER</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MPB7</accession>
    <name>A0A1M5MPB7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nitrile hydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0935</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79085.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0935"/>
    <dbReference type="EnsemblBacteria" id="SHG79085">
        <property type="protein sequence ID" value="SHG79085"/>
        <property type="gene ID" value="SAMN05444003_0935"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018822">
        <property type="term" value="F:nitrile hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024690">
        <property type="entry name" value="CN_hydtase_beta_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008990">
        <property type="entry name" value="Elect_transpt_acc-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02211">
        <property type="entry name" value="NHase_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50090">
        <property type="entry name" value="SSF50090"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NHase_beta" evidence="1">
        <location>
            <begin position="4"/>
            <end position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG79085.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="91" mass="10250" checksum="080811FC594E1A6B" modified="2017-03-15" version="1">MVSGQSVRVKSYSPPGHVRTPYYLRGKTGIVERVLGPFPNPEQLAYGLKAEPQPLCRVRFSMAEVWGKATDNPSDTIEAEIYSHWLEELDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MSD7</accession>
    <name>A0A1M5MSD7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Biotin--[biotin carboxyl-carrier protein] ligase</fullName>
            <ecNumber evidence="3">6.3.4.15</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0989</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + biotin + L-lysyl-[protein] = AMP + diphosphate + H(+) + N(6)-biotinyl-L-lysyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:11756"/>
            <dbReference type="Rhea" id="RHEA-COMP:9752"/>
            <dbReference type="Rhea" id="RHEA-COMP:10505"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29969"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57586"/>
            <dbReference type="ChEBI" id="CHEBI:83144"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.3.4.15"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="6.3.4.15" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80125.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899732.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0989"/>
    <dbReference type="EnsemblBacteria" id="SHG80125">
        <property type="protein sequence ID" value="SHG80125"/>
        <property type="gene ID" value="SAMN05444003_0989"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004077">
        <property type="term" value="F:biotin-[acetyl-CoA-carboxylase] ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd16442">
        <property type="entry name" value="BPL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004408">
        <property type="entry name" value="Biotin_CoA_COase_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003142">
        <property type="entry name" value="BPL_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004143">
        <property type="entry name" value="BPL_LPL_catalytic"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02237">
        <property type="entry name" value="BPL_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03099">
        <property type="entry name" value="BPL_LplA_LipB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00121">
        <property type="entry name" value="birA_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51733">
        <property type="entry name" value="BPL_LPL_CATALYTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0092">Biotin</keyword>
    <keyword evidence="5" id="KW-0436">Ligase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="BPL/LPL catalytic" evidence="4">
        <location>
            <begin position="11"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023267"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00024227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG80125.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="250" mass="27208" checksum="4CFC30C369B12F74" modified="2017-03-15" version="1">MTPDKHPNWPEGHRCIVLDTVDSTMAEAARRASDLHYPTWIMAREQTDARGRRGRPWENPKGNLSATLLMKPLCTAQAAAQRSFVAANALLEALSLYIDRRRISLKWPNDVLINGGKAAGILLESSGRGPFVDWLSVGIGVNLSYAPVVEEAVFAPVSVAGEGGEPVPPGEFLVTLANAFATQEKKLDAMGFTRIREDWLKHAARLGDTITARTTTETIEGLFDTIDKDGNLVLITAKGPRSIPAADVYF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MT11</accession>
    <name>A0A1M5MT11_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">3-methyladenine DNA glycosylase AlkC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0979</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79923.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0979"/>
    <dbReference type="EnsemblBacteria" id="SHG79923">
        <property type="protein sequence ID" value="SHG79923"/>
        <property type="gene ID" value="SAMN05444003_0979"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014825">
        <property type="entry name" value="DNA_alkylation"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08713">
        <property type="entry name" value="DNA_alkylation"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="SSF48371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG79923.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="371" mass="41207" checksum="28516E8D5E0C7EA1" modified="2017-03-15" version="1">MSGFSLKDQLFNEVTVRTLAVPFGAAGVFDADRFVARVVAAMPPLELKERINLIADELIGVLPNDFPDTVMAIKASLPPPLDPTRTDDDFGSFIYAPLGVVVEKQGIEDHLDLSLDLLEDLTQRFSMEFSIRAFLNRWPNETVKRMNAWAHHENYHVRRLASEGLRPKLPWGKSIPQTTSDRLPVLDALHVDSTRFVTRSVANHLNDIAKREPDVVIDLLDNWISKGQQDRKELDWMRRHALRSLIKEGHSGAMAHLGHDAKIAIDAAEVTITPDTLAIGEKAEITASFTAPKGGPIIADYVIDFVKSNGSSAPKVFKMKVLQAKPDVEIILKKAHLFKKGATTFTLYPGVHRISLQINGRIVASSQFVLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MT40</accession>
    <name>A0A1M5MT40_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF3291 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1003</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80416.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899746.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1003"/>
    <dbReference type="EnsemblBacteria" id="SHG80416">
        <property type="protein sequence ID" value="SHG80416"/>
        <property type="gene ID" value="SAMN05444003_1003"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021708">
        <property type="entry name" value="DUF3291"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11695">
        <property type="entry name" value="DUF3291"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF3291" evidence="1">
        <location>
            <begin position="3"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF11695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG80416.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="157" mass="17838" checksum="4B7F80742EDF94DA" modified="2017-03-15" version="1">MHLAEFNFGTLKHPFDDPRIADFQNNIDRVNAVAERSLGFVWRLSDEDMESVQEDQEGPLALRPNTASTLSVWTDAQSLFHFVEKTLHAQFMRRAHEWFVPDDRGHLVMWWIEEGHKPTVADALQRWTLLQSQGPGEHGFGAAELATLINGSSARVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MUQ9</accession>
    <name>A0A1M5MUQ9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Predicted 5' DNA nuclease, flap endonuclease-1-like, helix-3-turn-helix (H3TH) domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1008</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80513.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899751.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1008"/>
    <dbReference type="EnsemblBacteria" id="SHG80513">
        <property type="protein sequence ID" value="SHG80513"/>
        <property type="gene ID" value="SAMN05444003_1008"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="36"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="60"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG80513.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="230" mass="23957" checksum="9B4A4765FC4F34E0" modified="2017-03-15" version="1">MKDTAPKSSGIAAVATLFGLVAAGISWVALGFSIVGAIIVGVIVALLIILVLSLGWREPQEGPQGVRDLSPAKAEDAPAPQPAAAAPAATATAPVAEPEPAPAPEPAPAPKAEEKPKAAAKPKAAAKPKRPPVAPDGKPEMLKKARAGGADDLKQIKGVGPKLEKMLNTMGVYHFDQVAGWRAKEVKWVDENLEGFKGRVSRDEWVKQAKVLAKGGTTEFSKKVKKGDVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N0J2</accession>
    <name>A0A1M5N0J2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Lysophospholipase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1119</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82922.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899845.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1119"/>
    <dbReference type="EnsemblBacteria" id="SHG82922">
        <property type="protein sequence ID" value="SHG82922"/>
        <property type="gene ID" value="SAMN05444003_1119"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022742">
        <property type="entry name" value="Hydrolase_4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12146">
        <property type="entry name" value="Hydrolase_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hydrolase_4" evidence="1">
        <location>
            <begin position="39"/>
            <end position="291"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG82922.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="311" mass="34029" checksum="838E8E8B90FAAC6C" modified="2017-03-15" version="1">MNAAPYFEDVADGPEGGAAYWLTCEDGVRMRVVHWPAKDAKGTILMFCGRTEYAEKYGLPAREYVKAGYNMVTVDWRGQGLADRLADDRGLGHVGKFQDYQLDVDAVVAFVRAEGLAQPLFLIGHSMGGCIGLRALHNHLPVNAAAFSAPMWGVAIAQPLRAGAWVLGTVGPYIGLGKMVSPGRDTTNYVEVQEFDGNELTCDPEVFKYMRGQLAAHPDLGLGGPSINWIGEALYEMRALHNMPSPNCPCYTGLGTAETIVSPERIHSRMERWKGGELDEFDGAKHEIMIEVPSVRDTFYAKSIALFDANI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N1M4</accession>
    <name>A0A1M5N1M4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, ArsR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1140</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899863.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG83441">
        <property type="protein sequence ID" value="SHG83441"/>
        <property type="gene ID" value="SAMN05444003_1140"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001845">
        <property type="entry name" value="HTH_ArsR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00778">
        <property type="entry name" value="HTHARSR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00418">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50987">
        <property type="entry name" value="HTH_ARSR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH arsR-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG83441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="112" mass="12790" checksum="F4FE23D0F33A4ECD" modified="2017-03-15" version="1">MIQDPQLDDTFAALANGTRRAILARLAKGQASVNELAEPFDMSLPAISKHIKVLENAGLIERGRDAQFRPCNLNAAPLREVSNWAEQYRHIWEDRFDRMDTVLQQLKEETNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N363</accession>
    <name>A0A1M5N363_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1163</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83981.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899883.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1163"/>
    <dbReference type="EnsemblBacteria" id="SHG83981">
        <property type="protein sequence ID" value="SHG83981"/>
        <property type="gene ID" value="SAMN05444003_1163"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG83981.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="193" mass="22200" checksum="9FF9944D6A8D8738" modified="2017-03-15" version="1">MMISQFVKKLFQDWKSEEDGAVAVETILMLPILAWTYFAMMQFFHAYRHESISFKANITIADMFSREADYISPSYIDGAKSLLDFLSPIDDDPELRVTAFRWNEDDDEYQVAWSKERGSRGALTTDDLAGETDRIPIMYDGEMALLVETWIDYEPIFNIGMTGREMNAFTVISPRFTTQVCYNVGNDPSTQEC</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N4J8</accession>
    <name>A0A1M5N4J8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1180</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84362.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899899.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1180"/>
    <dbReference type="EnsemblBacteria" id="SHG84362">
        <property type="protein sequence ID" value="SHG84362"/>
        <property type="gene ID" value="SAMN05444003_1180"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036280">
        <property type="entry name" value="Multihaem_cyt_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48695">
        <property type="entry name" value="SSF48695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012070325" evidence="1">
        <location>
            <begin position="19"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG84362.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="204" mass="22207" checksum="3624A1D5D11E0108" modified="2017-03-15" version="1">MKYLMILAASLIGTQAFAAGETVEINPPAEGSISTEDALAAWDRIYEVASHPRCSNCHVGPSNLPMWSGPSYGKARPHGMNINAGESRVGAEFVQCSTCHAYREIATGDRLEHSAPQVAMDWRLAPVEAEWFGKSSVEVCNQLRNPELNGDRDYLAIASHLDHDLILHWAWNPGAGREPAPYSLQEHVNDVLAWGVGGMPCAND</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-09-29" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N512</accession>
    <name>A0A1M5N512_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">MFS transporter, DHA1 family, tetracycline resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1187</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84537.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899905.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG84537">
        <property type="protein sequence ID" value="SHG84537"/>
        <property type="gene ID" value="SAMN05444003_1187"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001958">
        <property type="entry name" value="Tet-R_TetA/multi-R_MdtG"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01035">
        <property type="entry name" value="TCRTETA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="7"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="43"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="77"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="101"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="135"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="165"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="205"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="248"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="282"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="306"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="338"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="372"/>
            <end position="393"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="6"/>
            <end position="400"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG84537.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="404" mass="42744" checksum="2460C26C570D6C85" modified="2017-03-15" version="1">MRLSGPFLFILATLLIDAIGIGIVFPIMPDLMDRVGAGSTAQGAFWGGIMMSAYAAAMFLFGPIIGSLSDAYGRRPVLIAALVTLTIDYVIMAMAETYWVLLVGRIVAGMAGATYITATAYIADISKPEERGAAFGMIGAAFGIGFVLGPALGGLASGWHITAPFWIAAALSALNVLFGIYVLPESLKPEKRRPFGKRDLNPFGSIARAFKIAGLAIPLICIFIFEFANMVYATLWSFWGREVFGWDGFTIGITLSAYGVLIAVVQAGVLPQLTKRLGDYKTLNIAIFAAIIGMVGFGFANTVWVVAIFLPIAALSDMAPPLLTAFAANRVGEDLQGLVQGVIASLSSVAAVLGPLVLTIAFERSVNAEGSYFPGAVFLVAAMLIAAIVPLVWRLRAVEREAEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N7X4</accession>
    <name>A0A1M5N7X4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Threonine/homoserine efflux transporter RhtA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1229</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85532.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1229"/>
    <dbReference type="EnsemblBacteria" id="SHG85532">
        <property type="protein sequence ID" value="SHG85532"/>
        <property type="gene ID" value="SAMN05444003_1229"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="38"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="70"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="101"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="126"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="151"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="176"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="209"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="240"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="263"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="11"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="150"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG85532.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="293" mass="31698" checksum="43EDC13768AD4614" modified="2017-03-15" version="1">MSDAPSRPIVGIFWMAFTGIMFVCVTAIVKYIGDEVPAAQGAFLRYILGLVFLIPMIRPILAARLTKRQVLLFSARGFAHTLAVILWFFAMAHIPIADVTAMNYLSPIYVSIGAALFLGEKLPPRRLAAVVVALIGALIILRPGLREISPGHIAMIFTAIGFAAGYLMAKQLADEVAPAVVVGMLSITVTIFLAPFAFAVWVPVSWENIGWLFLVACFATAGHYTMTLAFAAAPLTVTQPVTFLQLVWAVLLGALVFDEGFDGWVILGGTIIMAAVSFITWREAVARRREAAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NAY4</accession>
    <name>A0A1M5NAY4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 15">Aspartokinase</fullName>
            <ecNumber evidence="6 15">2.7.2.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="18" type="ORF">SAMN05444003_1292</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="18 19" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18 19">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 15">
            <text>ATP + L-aspartate = 4-phospho-L-aspartate + ADP</text>
            <dbReference type="Rhea" id="RHEA:23776"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57535"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.2.4"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 16">Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; (S)-tetrahydrodipicolinate from L-aspartate: step 1/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 16">Amino-acid biosynthesis; L-methionine biosynthesis via de novo pathway; L-homoserine from L-aspartate: step 1/3.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4 16">Amino-acid biosynthesis; L-threonine biosynthesis; L-threonine from L-aspartate: step 1/5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 15">Belongs to the aspartokinase family.</text>
    </comment>
    <dbReference type="EC" id="2.7.2.4" evidence="6 15"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86714.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899995.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1292"/>
    <dbReference type="EnsemblBacteria" id="SHG86714">
        <property type="protein sequence ID" value="SHG86714"/>
        <property type="gene ID" value="SAMN05444003_1292"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00015"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00050">
        <property type="reaction ID" value="UER00461"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00051">
        <property type="reaction ID" value="UER00462"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004072">
        <property type="term" value="F:aspartate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009088">
        <property type="term" value="P:threonine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd04261">
        <property type="entry name" value="AAK_AKii-LysC-BS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036393">
        <property type="entry name" value="AceGlu_kinase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041740">
        <property type="entry name" value="AKii-LysC-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001048">
        <property type="entry name" value="Asp/Glu/Uridylate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005260">
        <property type="entry name" value="Asp_kin_monofn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001341">
        <property type="entry name" value="Asp_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018042">
        <property type="entry name" value="Aspartate_kinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027795">
        <property type="entry name" value="CASTOR_ACT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00696">
        <property type="entry name" value="AA_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01842">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13840">
        <property type="entry name" value="ACT_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000726">
        <property type="entry name" value="Asp_kin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53633">
        <property type="entry name" value="SSF53633"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00656">
        <property type="entry name" value="asp_kin_monofn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00657">
        <property type="entry name" value="asp_kinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00324">
        <property type="entry name" value="ASPARTOKINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 16" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="12 14" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11 15 18" id="KW-0418">Kinase</keyword>
    <keyword evidence="13" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="10 14" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 15" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="ACT" evidence="17">
        <location>
            <begin position="268"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="domain" description="ACT" evidence="17">
        <location>
            <begin position="350"/>
            <end position="412"/>
        </location>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <begin position="7"/>
            <end position="10"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="47"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="74"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <begin position="174"/>
            <end position="175"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="180"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="185"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <begin position="210"/>
            <end position="211"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000709"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004766"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004986"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00010122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00013059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00016273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PIRSR" id="PIRSR000726-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="RuleBase" id="RU003448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="RuleBase" id="RU004249"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="SHG86714.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="412" mass="44496" checksum="BBA32356D4447680" modified="2017-03-15" version="1">MPTLVMKFGGTSVANLDRIARASKRVAREVANGYNVIVIVSAMSGKTNELVGWVNETSPLYDAREYDGVVSSGENVTAGLMALRLQEMDIPARSWQGWQVPVKTTDAHSSARIEEIPTENIEAKFAEGMRVAVVAGFQGISPEGRITTLGRGGSDTTAVAFAAAFGAERCDIYTDVDGVYTTDPRITSKARKLDKIAFEEMLELASLGAKVLQTRSVELAMRYKVRLRVLSSFEEPSDDAGTLVCDEEEIMESNVVAGVAYSRDEAKMTLISVADRPGIAAAIFGPLSEAGVNVDMIVQNISEEGRTDMTFSCPTDQVLRAEKAMEEAKGSGEINFHDLVSDQEVSKVSVVGIGMRSHAGVAAKMFEALHAEGINIKVITTSEIKISVLIDRKYMELAVQALHDAFELEKAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NB97</accession>
    <name>A0A1M5NB97_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">S-methyl-5'-thioadenosine phosphorylase</fullName>
            <ecNumber evidence="1">2.4.2.28</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">5'-methylthioadenosine phosphorylase</fullName>
            <shortName evidence="1">MTA phosphorylase</shortName>
            <shortName evidence="1">MTAP</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">mtnP</name>
        <name evidence="3" type="ORF">SAMN05444003_1299</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the reversible phosphorylation of S-methyl-5'-thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S-adenosylmethionine. Has broad substrate specificity with 6-aminopurine nucleosides as preferred substrates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>phosphate + S-methyl-5'-thioadenosine = adenine + S-methyl-5-thio-alpha-D-ribose 1-phosphate</text>
            <dbReference type="Rhea" id="RHEA:11852"/>
            <dbReference type="ChEBI" id="CHEBI:16708"/>
            <dbReference type="ChEBI" id="CHEBI:17509"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58533"/>
            <dbReference type="EC" id="2.4.2.28"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-methionine biosynthesis via salvage pathway; S-methyl-5-thio-alpha-D-ribose 1-phosphate from S-methyl-5'-thioadenosine (phosphorylase route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homohexamer. Dimer of a homotrimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the PNP/MTAP phosphorylase family. MTAP subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.28" evidence="1"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86824.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900002.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1299"/>
    <dbReference type="EnsemblBacteria" id="SHG86824">
        <property type="protein sequence ID" value="SHG86824"/>
        <property type="gene ID" value="SAMN05444003_1299"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00904">
        <property type="reaction ID" value="UER00873"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017061">
        <property type="term" value="F:S-methyl-5-thioadenosine phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019509">
        <property type="term" value="P:L-methionine salvage from methylthioadenosine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006166">
        <property type="term" value="P:purine ribonucleoside salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09010">
        <property type="entry name" value="MTAP_SsMTAPII_like_MTIP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1580">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01963">
        <property type="entry name" value="MTAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010044">
        <property type="entry name" value="MTAP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000845">
        <property type="entry name" value="Nucleoside_phosphorylase_d"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035994">
        <property type="entry name" value="Nucleoside_phosphorylase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42679">
        <property type="entry name" value="PTHR42679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01048">
        <property type="entry name" value="PNP_UDP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53167">
        <property type="entry name" value="SSF53167"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01694">
        <property type="entry name" value="MTAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="1" id="KW-0660">Purine salvage</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PNP_UDP_1" evidence="2">
        <location>
            <begin position="4"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="region of interest" description="Phosphate binding" evidence="1">
        <location>
            <begin position="53"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="region of interest" description="Phosphate binding" evidence="1">
        <location>
            <begin position="86"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="1">
        <location>
            <begin position="209"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="11"/>
        </location>
        <ligand>
            <name>phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="185"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="186"/>
        </location>
        <ligand>
            <name>phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
        </ligand>
    </feature>
    <feature type="site" description="Important for substrate specificity" evidence="1">
        <location>
            <position position="166"/>
        </location>
    </feature>
    <feature type="site" description="Important for substrate specificity" evidence="1">
        <location>
            <position position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01963"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG86824.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="289" mass="31268" checksum="0693BD994C5C6F58" modified="2017-03-15" version="1">MQTKIGIIGGSGLYEIDGLQDAEWIEIDSLWGAPSDAVLSGVLNGIPMVFLPRHGRGHVHSPTTVPYRANIDALKRIGVTDVISVSACGSFREEMAPGDFVIVDQFIDRTFAREKSFFGTGCVAHVSVAHPTCPRLSDVCETAAKDAGVTVHKGGTYLAMEGPQFSSQAESNLYRDVWNCDVIGMTNMPEAKLAREAELCYASVAMITDYDSWHPDHGAVDVSDVIKTLQDNGTKARDMVTRLPELLGSERDLCPHGCDRALEYAVMTAPEKRDTALVAKLDAVAGRVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NC20</accession>
    <name>A0A1M5NC20_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1320</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1320"/>
    <dbReference type="EnsemblBacteria" id="SHG87114">
        <property type="protein sequence ID" value="SHG87114"/>
        <property type="gene ID" value="SAMN05444003_1320"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG87114.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="56" mass="5944" checksum="B7E7749BE2C5B3EE" modified="2017-03-15" version="1">MLKALKKFSAEEDGAVTVEYVVLTSAAIFMAIFVMGIISEGAEDLATKVSNDLSSM</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NCW5</accession>
    <name>A0A1M5NCW5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative phosphoesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1335</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87360.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900031.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1335"/>
    <dbReference type="EnsemblBacteria" id="SHG87360">
        <property type="protein sequence ID" value="SHG87360"/>
        <property type="gene ID" value="SAMN05444003_1335"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004843">
        <property type="entry name" value="Calcineurin-like_PHP_ApaH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026336">
        <property type="entry name" value="P_estr_lig_assc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024173">
        <property type="entry name" value="Pesterase_MJ0037"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00149">
        <property type="entry name" value="Metallophos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000887">
        <property type="entry name" value="Pesterase_MJ0037"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04123">
        <property type="entry name" value="P_estr_lig_assc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Metallophos" evidence="1">
        <location>
            <begin position="28"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG87360.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="220" mass="23801" checksum="B07D8C2E53D4ADD3" modified="2017-03-15" version="1">MNTHHVFEFNGATFWALAEGALWWPSQKLLCVSDLHLGKSDRIARRSGRMLPPYETEATLDRLGNLVSRLAPSTIICLGDSFDDLDAALGLSEEHKARITTLQAGRTWIWVEGNHDPGPIDIGGDHKAEVMVEGLTFRHIAAPYANAEVSGHYHPKCRLQTGSSRPAFLINDSRIVLPAFGTYTGGLRASDSALKTLMGPNATAILTGKKALAVPMAATT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NDN8</accession>
    <name>A0A1M5NDN8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1319</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87103.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1319"/>
    <dbReference type="EnsemblBacteria" id="SHG87103">
        <property type="protein sequence ID" value="SHG87103"/>
        <property type="gene ID" value="SAMN05444003_1319"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG87103.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="57" mass="5676" checksum="5E85BF142602A37E" modified="2017-03-15" version="1">MLNFIKNFRNDEDGAVTVDWVVLTAAIVALGLAVGSAVSGGAQTGASNIVGDIAANT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NE29</accession>
    <name>A0A1M5NE29_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1364</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87866.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900055.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1364"/>
    <dbReference type="EnsemblBacteria" id="SHG87866">
        <property type="protein sequence ID" value="SHG87866"/>
        <property type="gene ID" value="SAMN05444003_1364"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007435">
        <property type="entry name" value="DUF484"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04340">
        <property type="entry name" value="DUF484"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG87866.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="235" mass="26333" checksum="3DE19A90D5174F28" modified="2017-03-15" version="1">MTNKPLMDAHVRDKIIADPEVILEDQDLMNALVAANEQSMGTNIVDLRGIAMERLTSRLDRLEDTHRSVIAAAYENLAGTNQIHRAVLRLLDATKFDDFLHDLSHDVADALRVDVVRLVLETETSDDDPAIKKMGDALSVCEKGFTDAYVTRGRDIPVRQVTLRQTRTDGEEIYGDKADYIRSEACLKLDFGEGRLPGMLLLGSEDPHLFTPQQGTDLMTFFAGVFERAMRQWLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NEV4</accession>
    <name>A0A1M5NEV4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Isoleucine--tRNA ligase</fullName>
            <ecNumber evidence="9">6.1.1.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Isoleucyl-tRNA synthetase</fullName>
            <shortName evidence="9">IleRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">ileS</name>
        <name evidence="13" type="ORF">SAMN05444003_1370</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8 9">Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>ATP + L-isoleucine + tRNA(Ile) = AMP + diphosphate + L-isoleucyl-tRNA(Ile)</text>
            <dbReference type="Rhea" id="RHEA:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:9666"/>
            <dbReference type="Rhea" id="RHEA-COMP:9695"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58045"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78528"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.5"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="9">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="9">IleRS has two distinct active sites: one for aminoacylation and one for editing. The misactivated valine is translocated from the active site to the editing site, which sterically excludes the correctly activated isoleucine. The single editing site contains two valyl binding pockets, one specific for each substrate (Val-AMP or Val-tRNA(Ile)).</text>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.5" evidence="9"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87977.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900061.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1370"/>
    <dbReference type="EnsemblBacteria" id="SHG87977">
        <property type="protein sequence ID" value="SHG87977"/>
        <property type="gene ID" value="SAMN05444003_1370"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002161">
        <property type="term" value="F:aminoacyl-tRNA editing activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004822">
        <property type="term" value="F:isoleucine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006428">
        <property type="term" value="P:isoleucyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07960">
        <property type="entry name" value="Anticodon_Ia_Ile_BEm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.740.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02002">
        <property type="entry name" value="Ile_tRNA_synth_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001412">
        <property type="entry name" value="aa-tRNA-synth_I_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002300">
        <property type="entry name" value="aa-tRNA-synth_Ia"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033708">
        <property type="entry name" value="Anticodon_Ile_BEm"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002301">
        <property type="entry name" value="Ile-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023585">
        <property type="entry name" value="Ile-tRNA-ligase_type1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013155">
        <property type="entry name" value="M/V/L/I-tRNA-synth_anticd-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009080">
        <property type="entry name" value="tRNAsynth_Ia_anticodon-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009008">
        <property type="entry name" value="Val/Leu/Ile-tRNA-synth_edit"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08264">
        <property type="entry name" value="Anticodon_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00133">
        <property type="entry name" value="tRNA-synt_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00984">
        <property type="entry name" value="TRNASYNTHILE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47323">
        <property type="entry name" value="SSF47323"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50677">
        <property type="entry name" value="SSF50677"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00392">
        <property type="entry name" value="ileS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00178">
        <property type="entry name" value="AA_TRNA_LIGASE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 9 10" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="5 9 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 9 10" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 9 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 9 10" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="tRNA-synt_1" evidence="11">
        <location>
            <begin position="32"/>
            <end position="687"/>
        </location>
    </feature>
    <feature type="domain" description="Anticodon_1" evidence="12">
        <location>
            <begin position="731"/>
            <end position="879"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region" evidence="9">
        <location>
            <begin position="61"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="9">
        <location>
            <begin position="649"/>
            <end position="653"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="608"/>
        </location>
        <ligand>
            <name>L-isoleucyl-5'-AMP</name>
            <dbReference type="ChEBI" id="CHEBI:178002"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="652"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00025217"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU363035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF08264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHG87977.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="974" mass="110262" checksum="4D0A197293B7BF21" modified="2017-03-15" version="1">MSAETPDYKDTLNLPRTDFPMRAGLPKREPAWLERWNEIGVYDRLREKEGRKPFTLHDGPPYANGHLHIGHALNKTLKDFVVRSHQMMGYDSRYVPGWDCHGLPIEWKIEEKYRKKGKNKDDVPVVDFRRECRAFADEWVDIQREEFKRIGVTGKWENPYLTMDYRAEAVIADEFMKFLMNGTLYQGSKPVMWSPMEQTALAEAEVEYHDKESFTIWVKFKVAEPADHKLAGAHVVIWTTTPWTMPSNKGVVYGKDIAYGLYEVTGTPEESWAQVGDRYILADNLAADVMKGARLDEEQYTRMADVPASDLEGIGLTHPLKGAEGSNGEWDDIRDFRAAEFVTATEGTGFVHCAPSHGMEEFEMYRDLGMLEQVITYNVLDDGGFRADLPFFGGKYILSRKGGEGDANKAVIDKLAEVGGLLARGKIKHSYPHSWRSKAPIIYRNTPQWFASVDRKLDDGMGEMGDSIRERALNSIDQLVKWWPQAGRNRLYSMIEARPDWVLSRQRAWGVPLTCFTKKGALPTDPEFLLKNNEVNARIVKAFEEKSADVWFEDGFKEEVLGGIVNPEDYDQVMDVLDVWFDSGSTHAFVLRDREDGTEDGIADVYLEGTDQHRGWFHSSLLQGCGTLGRAPYRNVVTCGFTLDDKGMKMSKSLGNIIAPAEVIKQYGADILRLWVAQADYTADQRIGPEILKGVADSYRRLRNTMRFMLGSLHDFTESDRVEPADMPELERWVLHRLAELDAQVRKGYAEFDYNAVWQAIFTFATSDLSAYYFDIRKDALYCDGNTLRRRSARTVLDILYHRLTTWLAPILVFTMEEVWLERHPEESASVHLRDFPDTPAAWLDEALAAKWATIRQVRRVVTGALEVQRTERVIGASLEAAPEVYVDADTAAILNTVEFEDVCITSAISVSSGAAPAGAFTMDDTAGVAVVFKHALGEKCQRSWKILPDVGQYNHPGVCKRCSDALDELLADA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NFP4</accession>
    <name>A0A1M5NFP4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Primosomal protein N'</fullName>
            <ecNumber evidence="9">3.6.4.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">ATP-dependent helicase PriA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">priA</name>
        <name evidence="11" type="ORF">SAMN05444003_1359</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Component of the primosome.</text>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the helicase family. PriA subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.-" evidence="9"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87783.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900050.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1359"/>
    <dbReference type="EnsemblBacteria" id="SHG87783">
        <property type="protein sequence ID" value="SHG87783"/>
        <property type="gene ID" value="SAMN05444003_1359"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990077">
        <property type="term" value="C:primosome complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006269">
        <property type="term" value="P:DNA replication, synthesis of RNA primer"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006268">
        <property type="term" value="P:DNA unwinding involved in DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1440.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00983">
        <property type="entry name" value="PriA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005259">
        <property type="entry name" value="PriA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041222">
        <property type="entry name" value="PriA_3primeBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042115">
        <property type="entry name" value="PriA_3primeBD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041236">
        <property type="entry name" value="PriA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040498">
        <property type="entry name" value="PriA_CRR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17764">
        <property type="entry name" value="PriA_3primeBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18074">
        <property type="entry name" value="PriA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18319">
        <property type="entry name" value="PriA_CRR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00595">
        <property type="entry name" value="priA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 9" id="KW-0235">DNA replication</keyword>
    <keyword evidence="8 9" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6 9 11" id="KW-0347">Helicase</keyword>
    <keyword evidence="5 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="1 9" id="KW-0639">Primosome</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0862">Zinc</keyword>
    <keyword evidence="9" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="10">
        <location>
            <begin position="210"/>
            <end position="376"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="C4-type" evidence="9">
        <location>
            <begin position="437"/>
            <end position="449"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="C4-type" evidence="9">
        <location>
            <begin position="464"/>
            <end position="480"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG87783.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="730" mass="79727" checksum="08821454369FDE38" modified="2017-03-15" version="1">MSETFFHEGDLVGVLTAQPLDRVLDYKAPEGGVFMGAFVEVPLGPRKVLGVVWGEGAGDYDRSKIRSIIRVLDVPPMREEMAEFLMRAADYTLTPMSAMLRLATRAPGLGDAPSMRKVYRLGDQEPDRITPAREKVLGVLRDFGGLSFTLKEVAEMAGVGTSVVKGLVKLGAVREEDTPRDMPYPQLEPDYGGKELTEDQARVSDALKEGIRSGAYGTTLLKGVTGSGKTEVYLEAVAECLRQGRQALVLLPEIALTGEFLTRVEARFGMKPAEWHSGVTMNERRRCWKMVGQGAAQMVVGARSALFLPFQDLGLIVVDEEHDTSYKQEDGVMYNARDMTVLRAAINGAQVVLASATPSLESWANVEAGKYQRQTLTTRFGEAVMPKMSAIDMRIEDVPSGTWVSPTLRDAMAERLEAGEQSLIFLNRRGYAPVTLCRACGHQIGCDHCDARMVEHRFLKRLMCHQCGETKPMPTVCPHCEAEDRLSAVGPGVERMGEEVSALFPEARVAVLSSDLYGSARAMKAHIEEIASGGADIIIGTQLVAKGHNFPNLTLVGVIDADLGLQGSDLRAAERTFQLMRQVAGRAGRAEKPGEALLQTYQPEHAVIRAILAGDEESFWAAEAAERKQAGVPPYGRMAGIVLSSPNVQEVFDLGGEMARRDAPLRQIGAQIFGPAPAPIARIRGRHRVRLLVKVEKTAPLQKALAQWAGQFKLPSNLRMSIDIDPQSFY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NJZ7</accession>
    <name>A0A1M5NJZ7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Nucleoside ABC transporter membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1447</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89519.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900131.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1447"/>
    <dbReference type="EnsemblBacteria" id="SHG89519">
        <property type="protein sequence ID" value="SHG89519"/>
        <property type="gene ID" value="SAMN05444003_1447"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="6"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="35"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="91"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="158"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="205"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="256"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="291"/>
            <end position="310"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG89519.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="322" mass="34166" checksum="6E7020A3BFF478EC" modified="2017-03-15" version="1">MDLLTILQILDSSVRLAVPLLLACLAGLYSERAGIFDIGLEGKMLAAAFMAAAIAYTSGSAWVGLLAGIGASLVLSAVHGVASITFRGNQLISGVAINFLAAGLTVVIAQSWFAQGGRTPTLQGDARFEPITLPFAESLQSVPVIGPIYYELISGHSVLVYIAFLLVPLTWWVLYRTRFGLRLRAVGENPASVDTAGISVVQLRYIAVIICGVLCGLAGAYLSTALQAGFTKDMSAGRGFIALAALIFAKWRPWHALYATLLFGFLQALALRPDLLENTLGFKVNGQLLDALPYILTVVILAGFVGKAIPPRAGGEPYVKER</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NKN7</accession>
    <name>A0A1M5NKN7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Nucleoside ABC transporter membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1446</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89493.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900130.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1446"/>
    <dbReference type="EnsemblBacteria" id="SHG89493">
        <property type="protein sequence ID" value="SHG89493"/>
        <property type="gene ID" value="SAMN05444003_1446"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="53"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="87"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="110"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="140"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="204"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="249"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="276"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="302"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="329"/>
            <end position="348"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG89493.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="366" mass="39236" checksum="C3B91D340EC57596" modified="2017-03-15" version="1">MDVMPKWAEVVLVPLISLLLASILSAIVILAIGENPWDALMLMIDGALGSTYGWGYTLYYATNFIFTGLAVAIAFHARMFNIGGEGQAMLGGLGVALVCLYIPWPHWSLALLGASVSAAIFGAAWATIPAFLQAKRGSHIVITTIMFNFIAAALLNFLLIGALKPTGSMEPATGKFPETTHLPSFQDMFSTADNVMFRGAPANISFFVAVAACFALWFLIWRTRLGYEIRAFGHSESAAKYAGISPTKIIMIAMMISGALAGMMAINNVMGEAERLVLNAVEGAGFIGIAVALMGRSHPFGVFLAALLFGFLYQGGAELALWTSIPRELIVVIQALVILFTGALDNMVRMPLERIFLAFRKPAKGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NPA4</accession>
    <name>A0A1M5NPA4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1523</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91275.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG91275">
        <property type="protein sequence ID" value="SHG91275"/>
        <property type="gene ID" value="SAMN05444003_1523"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5011957333" evidence="1">
        <location>
            <begin position="22"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG91275.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="95" mass="10619" checksum="5764D4DBA6E4C223" modified="2017-03-15" version="1">MRFALSLAFCFLLPSFGAAQIADLDCDDRERLTETLENVLGATRQGIGLRDPDTTLEIWVQTRNSDWFIVQSYANGTSCIVAMGEFWEDRVNGPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NQK7</accession>
    <name>A0A1M5NQK7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator, TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1532</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91469.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900206.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG91469">
        <property type="protein sequence ID" value="SHG91469"/>
        <property type="gene ID" value="SAMN05444003_1532"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039538">
        <property type="entry name" value="BetI_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023772">
        <property type="entry name" value="DNA-bd_HTH_TetR-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13977">
        <property type="entry name" value="TetR_C_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01081">
        <property type="entry name" value="HTH_TETR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0678">Repressor</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="3">
        <location>
            <begin position="16"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="2">
        <location>
            <begin position="39"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG91469.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="211" mass="24469" checksum="D685DAEFDA9A9362" modified="2017-03-15" version="1">MNVETPSRKRRSEPREIRRLQLIMAALDSIAKRGFSDTTLKHVTEGASLSQGVANYHFESKEALYDATLGYLAREHYETWTRYYEQAKPTPAHRLAAIIAADFDKDICTSKRLAVWFAFWGQVKYRPNYQKIHNQYDDERHELIERLCAELIEYGEYDLNASQVARSIVALSDGAWLCLMLYPKGTTAEEYHSDNLLTLAKYFPKHFPLEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NR28</accession>
    <name>A0A1M5NR28_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative tricarboxylic transport membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1551</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91928.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900220.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1551"/>
    <dbReference type="EnsemblBacteria" id="SHG91928">
        <property type="protein sequence ID" value="SHG91928"/>
        <property type="gene ID" value="SAMN05444003_1551"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002823">
        <property type="entry name" value="DUF112_TM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01970">
        <property type="entry name" value="TctA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="18"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="44"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="79"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="109"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="146"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="171"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="203"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="261"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="325"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="356"/>
            <end position="379"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="391"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="468"/>
            <end position="487"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG91928.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="505" mass="52682" checksum="017B3D12CA30AC7E" modified="2017-03-15" version="1">MLEGLLIGLETAFSLKNLLMVIGGCLIGTFIGMLPGLGPMSIIAIMIPVAISLGDASAALILLAGVYYGAIFGGSTSSILLNAPGVAGTVASSFDGYPMARKGKAGKALTIAAIASFAGGTLGALLLMVFAPALSSVALLFHSAEYFALMVVGLSAIAAFAGTGQIAKAMIMTLLGLIMATVGEGALFNLPRFTMGIMDLQSGFGFITLAMAMFALPEALFLVLKPKDLKGDEGEIKDLRISRTEAKAIAPVIGRQSVQGFFIGVLPGAGATIASFLGYAVERNIAPKEEQEEFGKGSIKGLAAPETANNAACTGSFVPLLTLGIPGSGTTAILLGALIALNVSPGPRLMIDEPQIFWAVIMSMFIGNLVLLILNLPLIPYIAKVLAIPRNYLIPFILFFTLMGAYIGQNNATELLILVAFGVCATALKFADYPLAPLLIGFILGGMMEDNFARSMQLYDGVSFIWERPMTLGLLVIAAILVVLPSYRARRLRSKAQAEGVADGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NUL3</accession>
    <name>A0A1M5NUL3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Oligopeptide transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_1601</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93197.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900267.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1601"/>
    <dbReference type="EnsemblBacteria" id="SHG93197">
        <property type="protein sequence ID" value="SHG93197"/>
        <property type="gene ID" value="SAMN05444003_1601"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025966">
        <property type="entry name" value="OppC_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12911">
        <property type="entry name" value="OppC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="37"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="107"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="144"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="169"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="222"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="277"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="7">
        <location>
            <begin position="105"/>
            <end position="294"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG93197.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="307" mass="33599" checksum="267BC270AC743B7B" modified="2017-03-15" version="1">MLLNRNAVSQLEDVPIEAVKGRSLWADARARFFRNKAATASLFVLIALGLFALFGGLLAQYERDFVDFTLIGSNAYKGVPSIETGHYFGTDSSGRDLYARVVQGTGISLMVGIVGALVAVVVGTLFGASAGYFGGKIDNVMMRFVDILMSIPFMFVLILMLVIFGRSIFMLFVGIGLISWLDMARIARGQTLSIKNKEFVEVAVATGVHPLRIILRHVVPNLLGIVIVYATLLIPSLIIFESFISFLGLGVQEPNTSLGALISEGAEQMQYGLTWQLYFPIAFFVITIFAFFFVGDGLRDALDPKDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PMX6</accession>
    <name>A0A1M5PMX6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Anaerobic selenocysteine-containing dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_1741</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03155.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900551.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1741"/>
    <dbReference type="EnsemblBacteria" id="SHH03155">
        <property type="protein sequence ID" value="SHH03155"/>
        <property type="gene ID" value="SAMN05444003_1741"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009010">
        <property type="entry name" value="Asp_de-COase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006656">
        <property type="entry name" value="Mopterin_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006963">
        <property type="entry name" value="Mopterin_OxRdtase_4Fe-4S_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04879">
        <property type="entry name" value="Molybdop_Fe4S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00384">
        <property type="entry name" value="Molybdopterin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00926">
        <property type="entry name" value="Molybdop_Fe4S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50692">
        <property type="entry name" value="SSF50692"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51669">
        <property type="entry name" value="4FE4S_MOW_BIS_MGD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="2 4" id="KW-0408">Iron</keyword>
    <keyword evidence="3 4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S Mo/W bis-MGD-type" evidence="5">
        <location>
            <begin position="16"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="23"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="26"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="30"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="58"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH03155.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="940" mass="104283" checksum="900C36457D51B0DE" modified="2017-03-15" version="1">MSLDQPHVDTSPKVSDEVRKTTCYMCACRCGINVHMKDGKVAYIEGNKDHPVNQGVLCAKGSAGIMQHNAPSRLQAPLKRVGPRGSGKFEEISWDEALDIAVGLLKPIREKNPEKLAFFTGRDQSQSFTGLWAQSYGTPNFAAHGGFCSVNMAAAGIYTMGGAFWEFGQPDWDLTKMVMIFGVAEDHDSNPIKIGIGKAKKNGAKVVGVNPIRTGYNAVADDWVGITPGTDGLFILSMIHCLMKAGKIDLDYLARFTNASVLINEDPKSEQRGLFLRDADGQPQVIDRRTGKLAPWNGAGVEPDLAGTHRAKGVTHRSVFHSMAERYMSDEYAPENVAEKCGLTPARIRQMAAELARVAFDEAIELDREWADFRGVTHSKMVGRPVSFHAMRGISAHSNGFQTCRALHTLQIILGTVETPGGMRFKPPYPKPATAHPKPHCKVTPGEALDGPHLGYTQGPEDLCINDDGSPIRIDKAYSWENPMSAHGLMHMVISNAHAGVPYKIDTLFMYMANMSWNSSMNTSGVMNMLTDTDEDGNYVIPNIIYSDAYSSEMVAYADLVLPDTTYLERHDCISLLDRPICEADGVADAIRWPVVEPDRDVRGFQSVLCDLGGRLGMPGFVNEDGSTKYKDYADYITNHIRRPGVGPLAGFRGNGDDHGRGEVNPNQIDRYIENGGFWIEHVPDDCAYFKPFNAAYQDWAVKMGFYDVVQPYIFQLYVEPMRKFQLASEGIGTRQPPDHLRDRIKETMDPLPIWYAPFEDSHVDPDEFPIHALTQRPMAMYHSWGTQNAWLRQIHGHNPLYLPTKVWEANGFEEGDWAKVSSAHGFIVVPVAHQASLNENTVWTWNAIGKRKGAWALEEDASETTKGFLLNHLIHELLPPKGDGLRWANSDPITGQAAWFDLRVKIEKTDQANHCLPAVPAIKSPVPKGPKELKWKVGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PS89</accession>
    <name>A0A1M5PS89_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1814</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04602.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900611.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH04602">
        <property type="protein sequence ID" value="SHH04602"/>
        <property type="gene ID" value="SAMN05444003_1814"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013200505" evidence="1">
        <location>
            <begin position="19"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH04602.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="122" mass="13318" checksum="EC88695F724FC205" modified="2017-03-15" version="1">MRLMFAAVLMCLGLPAAAQDFAVRDSDRVLDADGMAADVVGRTHEFFDGGVSFFSVSGTYTYTYTDGARAYGSYALKDDGQDGVVCSNFDNGFSRCDKYVHDGTRLVLLTEDGNRFPVKEAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PTL8</accession>
    <name>A0A1M5PTL8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized conserved protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1827</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the Gfa family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04859.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900622.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1827"/>
    <dbReference type="EnsemblBacteria" id="SHH04859">
        <property type="protein sequence ID" value="SHH04859"/>
        <property type="gene ID" value="SAMN05444003_1827"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016846">
        <property type="term" value="F:carbon-sulfur lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006913">
        <property type="entry name" value="CENP-V/GFA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011057">
        <property type="entry name" value="Mss4-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04828">
        <property type="entry name" value="GFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51316">
        <property type="entry name" value="SSF51316"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51891">
        <property type="entry name" value="CENP_V_GFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CENP-V/GFA" evidence="3">
        <location>
            <begin position="2"/>
            <end position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005495"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51891"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH04859.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="126" mass="14003" checksum="B4646567A9883012" modified="2017-03-15" version="1">MHTATCLCGAVKVEVNTNLPAPNACHCSQCRKQSGHYWASVDLKSENVTIYGEDNVTWYQASEKVRRGFCKTCGSFLFWDPIHHDTIAVAMGAFDGATHTKLALHIFVSDKGDYYDITDGLTQNQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PYK7</accession>
    <name>A0A1M5PYK7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1916</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900893.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1916"/>
    <dbReference type="EnsemblBacteria" id="SHH06611">
        <property type="protein sequence ID" value="SHH06611"/>
        <property type="gene ID" value="SAMN05444003_1916"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd02199">
        <property type="entry name" value="YjgF_YER057c_UK114_like_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013813">
        <property type="entry name" value="Endoribo_LPSP/chorism_mut-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035959">
        <property type="entry name" value="RutC-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14588">
        <property type="entry name" value="YjgF_endoribonc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55298">
        <property type="entry name" value="SSF55298"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="YjgF_endoribonc" evidence="1">
        <location>
            <begin position="6"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14588"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH06611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="154" mass="16065" checksum="4605F27BAC6EE4A9" modified="2017-03-15" version="1">MAGEIETRLAELGVTLPEAPAPAANYVPYVIAGDLVHISGQLPMDASGMVKGKLGDDCSVEDAAAAARLCGINLLSQLKAACDGDLERLVRVVKLGGFVNSTPDFTEQPKVVNGCSDFMVEVLGERGRHARSAVASPSLPFGVAVEIDGIFQIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PYW8</accession>
    <name>A0A1M5PYW8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7 8">Transcription elongation factor GreA</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Transcript cleavage factor GreA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">greA</name>
        <name evidence="11" type="ORF">SAMN05444003_1949</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 7 8">Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 8">Belongs to the GreA/GreB family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07207.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900725.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1949"/>
    <dbReference type="EnsemblBacteria" id="SHH07207">
        <property type="protein sequence ID" value="SHH07207"/>
        <property type="gene ID" value="SAMN05444003_1949"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070063">
        <property type="term" value="F:RNA polymerase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032784">
        <property type="term" value="P:regulation of DNA-templated transcription, elongation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.50.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00105">
        <property type="entry name" value="GreA_GreB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036953">
        <property type="entry name" value="GreA/GreB_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018151">
        <property type="entry name" value="TF_GreA/GreB_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006359">
        <property type="entry name" value="Tscrpt_elong_fac_GreA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028624">
        <property type="entry name" value="Tscrpt_elong_fac_GreA/B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001437">
        <property type="entry name" value="Tscrpt_elong_fac_GreA/B_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023459">
        <property type="entry name" value="Tscrpt_elong_fac_GreA/B_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022691">
        <property type="entry name" value="Tscrpt_elong_fac_GreA/B_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036805">
        <property type="entry name" value="Tscrpt_elong_fac_GreA/B_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30437">
        <property type="entry name" value="PTHR30437"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01272">
        <property type="entry name" value="GreA_GreB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03449">
        <property type="entry name" value="GreA_GreB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006092">
        <property type="entry name" value="GreA_GreB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46557">
        <property type="entry name" value="SSF46557"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01462">
        <property type="entry name" value="greA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00829">
        <property type="entry name" value="GREAB_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7 8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="11" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="11" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7 8" id="KW-0804">Transcription</keyword>
    <keyword evidence="3 7 8" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="GreA_GreB_N" evidence="10">
        <location>
            <begin position="4"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="domain" description="GreA_GreB" evidence="9">
        <location>
            <begin position="82"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00024916"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00105"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF03449"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH07207.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="156" mass="17148" checksum="2DE449AD535CBDD1" modified="2017-03-15" version="1">MEKIPLTQAGFDKLDEELKHLKTVERPAIIKAIAEAREHGDLSENAEYHSAKEKQSFIEGRVKELEGAISLADVINPSKLSGSIKFGATVELADEDTDEEKTYQIVGEYEADIDAGRLNIKSPLARALIGKDEGDSVDVRTPGGTRSYEILSITYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PZ05</accession>
    <name>A0A1M5PZ05_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1933</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900712.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1933"/>
    <dbReference type="EnsemblBacteria" id="SHH06902">
        <property type="protein sequence ID" value="SHH06902"/>
        <property type="gene ID" value="SAMN05444003_1933"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045514">
        <property type="entry name" value="DUF6478"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20086">
        <property type="entry name" value="DUF6478"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH06902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="257" mass="29142" checksum="8E4C6488FD15CD7D" modified="2017-03-15" version="1">MAKGSDSFFDKLAQGRVSNRWATAAASAEETELSRLRKQREEAKSLQKHLTTLLHVADGRLALPRIGSNSFPRPSGSLWAWRPQIWRGPLSKQGVASVQSKTKLGDEVRVFHDCTASEITLRQIRNTREGDLAPFGLKFDVFNFNGSFLSLVLDFPSDATEGLTRRHILRVSSFIEAESSLEVFLRLNIKNGPNTEQLVQELTVNKEDAMVEFDLAYADLNEKRLGDVWMDLIFENPKMNQIVVRDITFCRYPRAEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PZQ5</accession>
    <name>A0A1M5PZQ5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="13">Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta</fullName>
            <shortName evidence="13">ACCase subunit beta</shortName>
            <shortName evidence="13">Acetyl-CoA carboxylase carboxyltransferase subunit beta</shortName>
            <ecNumber evidence="13">2.1.3.15</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="primary">accD</name>
        <name evidence="16" type="ORF">SAMN05444003_1937</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12 13">Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="13">
            <text>acetyl-CoA + N(6)-carboxybiotinyl-L-lysyl-[protein] = malonyl-CoA + N(6)-biotinyl-L-lysyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:54728"/>
            <dbReference type="Rhea" id="RHEA-COMP:10505"/>
            <dbReference type="Rhea" id="RHEA-COMP:10506"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:57384"/>
            <dbReference type="ChEBI" id="CHEBI:83144"/>
            <dbReference type="ChEBI" id="CHEBI:83145"/>
            <dbReference type="EC" id="2.1.3.15"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="13">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="13">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="13">Lipid metabolism; malonyl-CoA biosynthesis; malonyl-CoA from acetyl-CoA: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="13">Acetyl-CoA carboxylase is a heterohexamer composed of biotin carboxyl carrier protein (AccB), biotin carboxylase (AccC) and two subunits each of ACCase subunit alpha (AccA) and ACCase subunit beta (AccD).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 13">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="13">Belongs to the AccD/PCCB family.</text>
    </comment>
    <dbReference type="EC" id="2.1.3.15" evidence="13"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900715.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1937"/>
    <dbReference type="EnsemblBacteria" id="SHH06969">
        <property type="protein sequence ID" value="SHH06969"/>
        <property type="gene ID" value="SAMN05444003_1937"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00655">
        <property type="reaction ID" value="UER00711"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009317">
        <property type="term" value="C:acetyl-CoA carboxylase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003989">
        <property type="term" value="F:acetyl-CoA carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016743">
        <property type="term" value="F:carboxyl- or carbamoyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:2001295">
        <property type="term" value="P:malonyl-CoA biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01395">
        <property type="entry name" value="AcetylCoA_CT_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034733">
        <property type="entry name" value="AcCoA_carboxyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000438">
        <property type="entry name" value="Acetyl_CoA_COase_Trfase_b_su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011762">
        <property type="entry name" value="COA_CT_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041010">
        <property type="entry name" value="Znf-ACC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01039">
        <property type="entry name" value="Carboxyl_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17848">
        <property type="entry name" value="zf-ACC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01070">
        <property type="entry name" value="ACCCTRFRASEB"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00515">
        <property type="entry name" value="accD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50980">
        <property type="entry name" value="COA_CT_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 13" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="13" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="11 13" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="7 13" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="2 13" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="10 13" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="4 13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 13" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 13 16" id="KW-0808">Transferase</keyword>
    <keyword evidence="8 13" id="KW-0862">Zinc</keyword>
    <keyword evidence="6 13" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CoA carboxyltransferase N-terminal" evidence="15">
        <location>
            <begin position="25"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="C4-type" evidence="13">
        <location>
            <begin position="29"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="14">
        <location>
            <begin position="286"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="29"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="32"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="48"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="51"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00025280"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01395"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS50980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="SHH06969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="306" mass="33596" checksum="3ED7AB8DE1F628EF" modified="2017-03-15" version="1">MNWITNYVRPTINSLFSRREVPENLWTKCDNCGTMLFHRELAENQNVCTNCDHHMPIGARDRLATLFDGGVFVEVAVPEPIADPLQFKDQKKYGDRIKDARKKTGEKDAMLVAEGEMGRTPVVVAVQDFSFMGGSMSMYVGNAIIAAAERAIETKRPLILFSAAGGARMQEGILGLMQMPRTTIAVQMLKDAGLPYIVVLTHPTTGGVTASYAMLGDVQIAEPNALIGFAGARVIEQTIGEKLPEGFQRAEYLLDHGMLDRVTKRTDLKDELVTIVRMLMKQPPAIKGDLPAPTADEAEKTEATAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q2T6</accession>
    <name>A0A1M5Q2T6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">50S ribosomal protein L36</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rpmJ</name>
        <name evidence="6" type="ORF">SAMN05444003_2009</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4 5">Belongs to the bacterial ribosomal protein bL36 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08348.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_010141322.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2009"/>
    <dbReference type="EnsemblBacteria" id="SHH08348">
        <property type="protein sequence ID" value="SHH08348"/>
        <property type="gene ID" value="SAMN05444003_2009"/>
    </dbReference>
    <dbReference type="GeneID" id="62369819"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00251">
        <property type="entry name" value="Ribosomal_L36"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000473">
        <property type="entry name" value="Ribosomal_L36"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035977">
        <property type="entry name" value="Ribosomal_L36_sp"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00444">
        <property type="entry name" value="Ribosomal_L36"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57840">
        <property type="entry name" value="SSF57840"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01022">
        <property type="entry name" value="rpmJ_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00828">
        <property type="entry name" value="RIBOSOMAL_L36"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 5" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH08348.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="41" mass="5082" checksum="6E427DC2E0C2A194" modified="2017-03-15" version="1">MKVRNSLRSLKQRHRDCRVVRRKGRVYVINKTQRRFKARQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q4F9</accession>
    <name>A0A1M5Q4F9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nicotinamidase/pyrazinamidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2029</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08740.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900788.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2029"/>
    <dbReference type="EnsemblBacteria" id="SHH08740">
        <property type="protein sequence ID" value="SHH08740"/>
        <property type="gene ID" value="SAMN05444003_2029"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.850">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000868">
        <property type="entry name" value="Isochorismatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036380">
        <property type="entry name" value="Isochorismatase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00857">
        <property type="entry name" value="Isochorismatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52499">
        <property type="entry name" value="SSF52499"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Isochorismatase" evidence="1">
        <location>
            <begin position="4"/>
            <end position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH08740.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="197" mass="21012" checksum="B81EBEBD36429091" modified="2017-03-15" version="1">MTKALIVIDVQNDFCPGGALAVAGGDEIVGGINALMDDFDAVILTQDWHPAGHSSLASSHDGQEPMSVIEMPYGPQVLWPDHCIQGTRGSAFHSDLRVDGDLIIRKGYNPAIDSYSAFFENDHTTPTGLEGYLRTRGINNVTMVGLAFDFCVNYSAVDAAKLGFDVTVRQNLCRAIDFDGSLEAAKTGMADAGVVLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q4R2</accession>
    <name>A0A1M5Q4R2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">VOC domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2039</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08916.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900797.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2039"/>
    <dbReference type="EnsemblBacteria" id="SHH08916">
        <property type="protein sequence ID" value="SHH08916"/>
        <property type="gene ID" value="SAMN05444003_2039"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004360">
        <property type="entry name" value="Glyas_Fos-R_dOase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00903">
        <property type="entry name" value="Glyoxalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="5"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH08916.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="143" mass="15396" checksum="7D8915E1CC586E0D" modified="2017-03-15" version="1">MTPQRVTLITLGVADLERSKAFYAALGWEPKEDLEEAAFYQINGMALGLFGLKDLAKDQGRPGTQLGIGGSTLGQNFPTEAEVDAAFDKALAAGATELKRPEKVFWGGYSGYYADPDGHVWEVAMNPFWPPNEDGSLTLPDAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QHX9</accession>
    <name>A0A1M5QHX9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 11">sn-glycerol-3-phosphate transport system permease protein UgpE</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">ugpE</name>
        <name evidence="13" type="ORF">SAMN05444003_2121</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Part of the ABC transporter complex UgpABCE involved in sn-glycerol-3-phosphate import. Probably responsible for the translocation of the substrate across the membrane.</text>
    </comment>
    <comment type="function">
        <text evidence="11">Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3 11">The complex is composed of two ATP-binding proteins (UgpC), two transmembrane proteins (UgpA and UgpE) and a solute-binding protein (UgpB).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 11">Cell inner membrane</location>
            <topology evidence="1 11">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="10">Cell membrane</location>
            <topology evidence="10">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 10">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH13481.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2121"/>
    <dbReference type="EnsemblBacteria" id="SHH13481">
        <property type="protein sequence ID" value="SHH13481"/>
        <property type="gene ID" value="SAMN05444003_2121"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055052">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008643">
        <property type="term" value="P:carbohydrate transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015794">
        <property type="term" value="P:glycerol-3-phosphate transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001407">
        <property type="term" value="P:glycerophosphodiester transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030165">
        <property type="entry name" value="UgpE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43744:SF8">
        <property type="entry name" value="PTHR43744:SF8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="11" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0762">Sugar transport</keyword>
    <keyword evidence="6 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="10" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="21"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="84"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="115"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="148"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="190"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="250"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="12">
        <location>
            <begin position="80"/>
            <end position="271"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00020515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00025342"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU363056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHH13481.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="284" mass="32066" checksum="EA0C4EE26AE268DD" modified="2017-03-15" version="1">MAQQHGMVEKRGLGIWMTHAFMILGVLVIFFPIWLAFVASTVTQPEIVKPPMPLWPGDQFWENYSRALFSGVNVPVATMLFNSLVMAIGIAVGKIIISLLSAFAIVYFRFPGRQTFFWMIFITLMLPVEVRIVPTFEVVAGFGMLNSYYGLIFPLIASATATFLFRQFFLTIPDELAEAARVDGARPMRFFWDIVVPMSRTNIAALFVILFIYGWNQYLWPLLITTDPEMNTIVMGIKQMFPSGDDVAEWPVIMATSILAMIPPVIVVVSMQKLFVRGLVDSEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QMW1</accession>
    <name>A0A1M5QMW1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Ribonuclease PH</fullName>
            <shortName evidence="4">RNase PH</shortName>
            <ecNumber evidence="4">2.7.7.56</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">tRNA nucleotidyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rph</name>
        <name evidence="7" type="ORF">SAMN05444003_2217</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>phosphate + tRNA(n+1) = a ribonucleoside 5'-diphosphate + tRNA(n)</text>
            <dbReference type="Rhea" id="RHEA:10628"/>
            <dbReference type="Rhea" id="RHEA-COMP:17343"/>
            <dbReference type="Rhea" id="RHEA-COMP:17344"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57930"/>
            <dbReference type="ChEBI" id="CHEBI:173114"/>
            <dbReference type="EC" id="2.7.7.56"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homohexameric ring arranged as a trimer of dimers.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the RNase PH family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.56" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15467.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901479.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2217"/>
    <dbReference type="EnsemblBacteria" id="SHH15467">
        <property type="protein sequence ID" value="SHH15467"/>
        <property type="gene ID" value="SAMN05444003_2217"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000175">
        <property type="term" value="F:3'-5'-exoribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009022">
        <property type="term" value="F:tRNA nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016075">
        <property type="term" value="P:rRNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006364">
        <property type="term" value="P:rRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008033">
        <property type="term" value="P:tRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd11362">
        <property type="entry name" value="RNase_PH_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00564">
        <property type="entry name" value="RNase_PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001247">
        <property type="entry name" value="ExoRNase_PH_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015847">
        <property type="entry name" value="ExoRNase_PH_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036345">
        <property type="entry name" value="ExoRNase_PH_dom2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027408">
        <property type="entry name" value="PNPase/RNase_PH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002381">
        <property type="entry name" value="RNase_PH_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018336">
        <property type="entry name" value="RNase_PH_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01138">
        <property type="entry name" value="RNase_PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03725">
        <property type="entry name" value="RNase_PH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55666">
        <property type="entry name" value="SSF55666"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01966">
        <property type="entry name" value="RNasePH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01277">
        <property type="entry name" value="RIBONUCLEASE_PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="1 4" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="3 4" id="KW-0819">tRNA processing</keyword>
    <keyword evidence="2 4" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="RNase_PH" evidence="5">
        <location>
            <begin position="10"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="domain" description="RNase_PH_C" evidence="6">
        <location>
            <begin position="156"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="region of interest" description="Phosphate (substrate) binding" evidence="4">
        <location>
            <begin position="123"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="85"/>
        </location>
        <ligand>
            <name>phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <note>substrate</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00564"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01138"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF03725"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH15467.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="235" mass="25299" checksum="17DE50B44FCD5F6E" modified="2017-03-15" version="1">MRPSGRQIDQMRSVTIELDATRHAEGSCMIKCGDTHVLCTATVDERVPPFLKNSGLGWVTAEYGMLPRATHTRMRREAKNGQSGRTQEIQRLIGRSLRAGVDRVALGERQIVVDCDVIQADGGTRCASITGGWVALKLAVNKLMKAGEISSDPLTDPVAAISCGIYAGQEVLDLDYPEDSDAGVDGNFIMNGSKLVEVQMSAEGSTFTRAQMDKLLDLAEKGIGELNAIQMDAVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QNJ2</accession>
    <name>A0A1M5QNJ2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 8">Shikimate dehydrogenase (NADP(+))</fullName>
            <shortName evidence="8">SDH</shortName>
            <ecNumber evidence="3 8">1.1.1.25</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">aroE</name>
        <name evidence="12" type="ORF">SAMN05444003_2228</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>NADP(+) + shikimate = 3-dehydroshikimate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:17737"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16630"/>
            <dbReference type="ChEBI" id="CHEBI:36208"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.1.1.25"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 4/7.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the shikimate dehydrogenase family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.25" evidence="3 8"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15677.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901088.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2228"/>
    <dbReference type="EnsemblBacteria" id="SHH15677">
        <property type="protein sequence ID" value="SHH15677"/>
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        </source>
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    <sequence length="277" mass="29514" checksum="1829CD8CBDFB26F2" modified="2017-03-15" version="1">MNGRSIPLAGVIGDPISHSKSPKLHGHWLQRYGIEGHYIPLHVTEGNLATVVRALPKMGFVGANVTIPHKVSVMSLADQVSDRAILIGAANTLTFKEDGKIIADNTDGFGFMANLKENAPDWDPKAAPAVVFGAGGAARAVLVALADAGVPEILLSNRTRPKAEALKSEFGTRIKVVDWVQAGNVLEDASLVVNTTSLGMKGQPELRVPLDGLNADTLVNDLVYSPIQTQLLRTASEMGCKTVDGLGMLLHQAVPGFERWFGTTPDVDEDLRRAVLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QPL9</accession>
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                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
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            <strain evidence="2 3">DSM 28715</strain>
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            <dbReference type="SAM" id="Phobius"/>
        </source>
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    </evidence>
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    <sequence length="354" mass="38162" checksum="7C97E3205FF3335A" modified="2017-03-15" version="1">MIEQDDLKAAVSAGIVSEQQAASLLTLSHSRRGARENLAAGDEPFELFKGFNEIFIVIGLCILTVGWTSISAVAYADSINNPQQAAIPFGLVGTVILWLLSEYFIRRRRMVAPAIALSILFALNAAFSLTAYFAQPFMVAQEDFSSLPLPFALGTFALFIYWFRFRVPFAMAMIAVGLFIVAMLVAASQSGTPSSFEEMFLLSAGGPFAWITLALGIGVFVVAMIFDMSDPHRVTRRSANAFWLHVVAAPALVNTIALSLLASESTSTNLALALVLFVFALIAIIIDRRSFLIAAIGYVVALAATVFGGEGAATTILILGIALLLLGAFWERIRARLLKVLPSFVPVHRLPPSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
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                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
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            <strain evidence="7 8">DSM 28715</strain>
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        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
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        <property type="entry name" value="BCTRLSENSOR"/>
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        </location>
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            <begin position="230"/>
            <end position="257"/>
        </location>
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        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
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    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH16058.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="461" mass="50756" checksum="77DFA60766C1B40E" modified="2017-03-15" version="1">MNETQFQIIQENQRSNWVRLRTLVTLRWFAITGQIMAILVAVYVFDLQIEVGPCVLVVGSSILANLFSSFLYPENRRLTEREATLMLLFDIIQLSLLLYLTGGINNPFMLLILAPVTISATVLHRRSMFVVVAAALFCIAVLSQNSIPIRDADGAVLELPILFGFGFWVAMTIGVIFLAGYARQITVEMQAMGDALVATQLALSREQKLTDLGGVVAAAAHELGTPLATIKLVSTELAEELEDRKDLNEDVQLIAEQAERCREILHSMGRAGKDDVHLRTAPLEAVVREAAEPHMNRGKTVLFDAAPEAESHLAQPSIMRRPEIIHGLRNLIQNAVDFAHERVEIDISWTSNEITVRIADDGLGIPASVIGRIGDPFVRRRRKSQDLRNRPNYEGMGLGLFIAKTLLERSAAELVFVNGDQVGSGNEHVGAIVTVTWPRASIEMGRANIGSALGENELNLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QQ74</accession>
    <name>A0A1M5QQ74_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Protein-export protein SecB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">secB</name>
        <name evidence="4" type="ORF">SAMN05444003_2231</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homotetramer, a dimer of dimers. One homotetramer interacts with 1 SecA dimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the SecB family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15733.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901094.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2231"/>
    <dbReference type="EnsemblBacteria" id="SHH15733">
        <property type="protein sequence ID" value="SHH15733"/>
        <property type="gene ID" value="SAMN05444003_2231"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051262">
        <property type="term" value="P:protein tetramerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00821">
        <property type="entry name" value="SecB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003708">
        <property type="entry name" value="SecB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035958">
        <property type="entry name" value="SecB-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36918">
        <property type="entry name" value="PTHR36918"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02556">
        <property type="entry name" value="SecB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01594">
        <property type="entry name" value="SECBCHAPRONE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54611">
        <property type="entry name" value="SSF54611"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00809">
        <property type="entry name" value="secB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0143">Chaperone</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-0653">Protein transport</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0811">Translocation</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009990"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH15733.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="167" mass="18865" checksum="B637AC60CED047C8" modified="2017-03-15" version="1">MAKEPQAAAADAAQQPQVKSRVLAQYIRDMSFENILAQKGVSGDPQPEISVQVNLDARKRQTEHQFEVITKLQVTSKSKEKGDPLFMLEIEYAGIFHVEGLPDEQMHPYLLIECPRITFPFLRRIVSDVTRDGGFPPLNLETIDFLSLYRAELAKRAEAQKADKPVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QQ97</accession>
    <name>A0A1M5QQ97_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Metal dependent phosphohydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2251</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16118.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2251"/>
    <dbReference type="EnsemblBacteria" id="SHH16118">
        <property type="protein sequence ID" value="SHH16118"/>
        <property type="gene ID" value="SAMN05444003_2251"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH16118.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="222" mass="24736" checksum="3ABAF7629040FEEF" modified="2017-03-15" version="1">MADSTGLKYRQHMATAADHLSLKEGVVAQKTAWQRMLSGRRLDLLDPTPMDIEIEDIAHGLSFVARWNGQTVGDYAYSVAEHSILVVKIYERLEPKAPMKWKLAALLHDAPEYVIGDMISPVKAAVGPGYEDLDERLTRAIHIKFGLPAKIPADVKRKIKAADKISAWMEATQLAGFSEAEATKFFGKVSSDITGDLKLTLRPPMEVRQEFIDLHAQLLEQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QS19</accession>
    <name>A0A1M5QS19_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Amino acid/amide ABC transporter membrane protein 1, HAAT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2280</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16681.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901163.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2280"/>
    <dbReference type="EnsemblBacteria" id="SHH16681">
        <property type="protein sequence ID" value="SHH16681"/>
        <property type="gene ID" value="SAMN05444003_2280"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="38"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="78"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="117"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="179"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="224"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="258"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="305"/>
            <end position="323"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH16681.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="331" mass="35339" checksum="E91E7A2785E4410B" modified="2017-03-15" version="1">MSADFLYGIEVVINGLMAGVLYALVALGFVLIFKASGIFNYAQGVMALFAALTLVGIMEGQVPFSHLINAIFGTDLHYFGWTVPALLAIAVTVVIMIFFAWAVQKFVFRHLVGQEPIILFMATIGLAFFLEGVGDLMWGSDIRTIGLGLPQGGSLWIEEATASLGGDDFYGFFLDKLDILATAVAAVLVAALVAFSQYTKQGRAMRAVADDHQAALSVGISLDFIWILVWSIAGFVALVAGVLWGVKSGVQFSLSLIALKALPVLMLGGFTSIPGAIVGGLIIGVGEKLFEYLVGPLVGGATENWFAYVLALIFLVFRPQGLFGEKIIERV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QSB1</accession>
    <name>A0A1M5QSB1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycosyl transferase family 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2296</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17014.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901189.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH17014">
        <property type="protein sequence ID" value="SHH17014"/>
        <property type="gene ID" value="SAMN05444003_2296"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="1">
        <location>
            <begin position="8"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH17014.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="324" mass="36725" checksum="0C420D49016B5B71" modified="2017-03-15" version="1">MSESYDLSVVIPVYNAADTLRTLTEDFLSISHFSIQVILVDDGSSDGSVDLANQFSDDHENVESIVQGTNQGAGKARNVGFEKAVGRYTIFFDADDIVHTDVICDAINGLDEGGADVAMMPYFYRRSLSSSHDAMNLNDSKVWSDIMGRAKRKTVKLDDAASLLGFSNYPWNKVIRTKTFREVGLRYGSTPVNNDILGHWYSLLFADDILLIDSEVCTHIVEASGSNLTNQASQVRLTLFDALDETYDVLDARPELRSRYAHHYWSFVHRTSRWAYGRLEPQVKPAFNERYKKHLNRIDLRDYSRIRRRRSPSLADSILSSLLY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QUW9</accession>
    <name>A0A1M5QUW9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2317</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17509.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901227.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2317"/>
    <dbReference type="EnsemblBacteria" id="SHH17509">
        <property type="protein sequence ID" value="SHH17509"/>
        <property type="gene ID" value="SAMN05444003_2317"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH17509.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="666" mass="74433" checksum="D4233A5FBB2921A7" modified="2017-03-15" version="1">MAKAGCIVGSRKDGLGARLLMMLNCFKIAEQFGVEPFFYWPTKDSVAINMEHPEKLFSDQMMTSRFLSKDRYDELGRDAAPLWKFLADKNPKRLKRHLLNGGNLLVEEGFEIVLFPWEEDEAVRGTYRSYFDQIELVDILKERCSLVDETLSKGEAGSVAYHLRRGDILDTKPWMHTVWPSKVEPDEYYEAHLEKEPEKTALIFSDCQASIDRLQAQFPNLNAIGDIAPLEGLDPEQRDFLELYAMSKVDNIIAPILSAYSTAAARISGRQRLRFKEVLSDAEMTLANAKAADRLLNRPESYFGPSDMAHAYSRVAVHLATPDGYGTASAILETIKNEGSENAFIDVFHAVSQLHEEKWGMAAGYARAAAANPNIWPDDFVSARSVEVVCYASSGQRRKAGIAFREAFLFKPLSQDVCLAGTHLLLNFMINQNNFLPFDGPILRQLRLKATEDNSSTYLVGKVINKKLRKDLRSVALDWHSLVLDGKASRLKDDQAQLKKMRDRLDAVPEEVMFKHALAYQSMKGLVQCYLGDLNARKMVESAAEEQADNPLYAMRLADVLLAADDQKGALRILRGVSKLSQDNPLYVHKLGLVLSEMGKKQEAADLLGQAAAWDAAPAKMLGDYAMSAYRVGDGAAALKAMQKAFDKVPVFGKFQNQLARIRNSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QZS6</accession>
    <name>A0A1M5QZS6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Light-independent protochlorophyllide reductase subunit N</fullName>
            <shortName evidence="1">DPOR subunit N</shortName>
            <shortName evidence="1">LI-POR subunit N</shortName>
            <ecNumber evidence="1">1.3.7.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">bchN</name>
        <name evidence="3" type="ORF">SAMN05444003_2394</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>2 ADP + chlorophyllide a + oxidized 2[4Fe-4S]-[ferredoxin] + 2 phosphate = 2 ATP + 2 H2O + protochlorophyllide a + reduced 2[4Fe-4S]-[ferredoxin]</text>
            <dbReference type="Rhea" id="RHEA:28202"/>
            <dbReference type="Rhea" id="RHEA-COMP:10002"/>
            <dbReference type="Rhea" id="RHEA-COMP:10004"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33722"/>
            <dbReference type="ChEBI" id="CHEBI:33723"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:83348"/>
            <dbReference type="ChEBI" id="CHEBI:83350"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="1.3.7.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="1">Binds 1 [4Fe-4S] cluster per heterodimer. The cluster is bound at the heterodimer interface by residues from both subunits.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Porphyrin-containing compound metabolism; bacteriochlorophyll biosynthesis (light-independent).</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Protochlorophyllide reductase is composed of three subunits; BchL, BchN and BchB. Forms a heterotetramer of two BchB and two BchN subunits.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the BchN/ChlN family.</text>
    </comment>
    <dbReference type="EC" id="1.3.7.7" evidence="1"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19043.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901348.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2394"/>
    <dbReference type="EnsemblBacteria" id="SHH19043">
        <property type="protein sequence ID" value="SHH19043"/>
        <property type="gene ID" value="SAMN05444003_2394"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00671"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016730">
        <property type="term" value="F:oxidoreductase activity, acting on iron-sulfur proteins as donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016636">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036070">
        <property type="term" value="P:light-independent bacteriochlorophyll biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019685">
        <property type="term" value="P:photosynthesis, dark reaction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00352">
        <property type="entry name" value="ChlN_BchN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000510">
        <property type="entry name" value="Nase/OxRdtase_comp1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005970">
        <property type="entry name" value="Protochl_reductN"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00148">
        <property type="entry name" value="Oxidored_nitro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000162">
        <property type="entry name" value="P_chlorophyll_rd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01279">
        <property type="entry name" value="DPOR_bchN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0077">Bacteriochlorophyll biosynthesis</keyword>
    <keyword evidence="1" id="KW-0149">Chlorophyll biosynthesis</keyword>
    <keyword evidence="1" id="KW-0408">Iron</keyword>
    <keyword evidence="1" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="1" id="KW-0602">Photosynthesis</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Oxidored_nitro" evidence="2">
        <location>
            <begin position="28"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="28"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>ligand shared with heterodimeric partner</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="53"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>ligand shared with heterodimeric partner</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="114"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>ligand shared with heterodimeric partner</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00148"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH19043.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="427" mass="46359" checksum="C69AEF99679A95A4" modified="2017-03-15" version="1">MNDLSPPTGGGCRNTPILKERGQREVFCGLTGIIWLHRKMQDAFFLVVGSRTCAHLLQSAAGVMIFAEPRFGTAILEETDLAGMVDAHAELDREVARLLERRPDIRQLFLVGSCPSEVIKLDLATAAERLTKVYAPNVRVLNFSGSGIETTFTQGEDACLASMVPVLPESNERQLLVAGALPDVVEDQMMGLFEQLGIGPVKLLPARNIDNNTTVGPNTVYALTQPFLGDTAAALDRRGARQIAAPFPFGEEGTTAWLAAIAEEFGVDRDLFDQVTAAPRARARKAIAQAAENLNGKSVFFMPDSQLEVPLARFLTRECDMTAVEVGSPYIHDTIHGPDLELIPAGPTISEGQDVDKQLDRVRNARPDLTVCGLGLANPLEAEGLSTKWAIELVFTPVHFYEQAGDLAGLFSRPLRRKSKLSLEAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R228</accession>
    <name>A0A1M5R228_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2465</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH20475.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH20475">
        <property type="protein sequence ID" value="SHH20475"/>
        <property type="gene ID" value="SAMN05444003_2465"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH20475.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="133" mass="13850" checksum="FD5BF758E26D6C38" modified="2017-03-15" version="1">MSEEISSTSTADLTLNLKIPFTDLGIGGSGSIVFGNDFDPNDGAIWQFVDQLIPDDIGFVLNLSGGDSVGVGGYVATTATVYSHSAPVDVMLPGSTTTSVTAPVTPTGVGYTAHMVFDQVSVVRVFRRAEVFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RB58</accession>
    <name>A0A1M5RB58_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">PmbA protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2486</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase U62 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23535.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901562.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2486"/>
    <dbReference type="EnsemblBacteria" id="SHH23535">
        <property type="protein sequence ID" value="SHH23535"/>
        <property type="gene ID" value="SAMN05444003_2486"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045569">
        <property type="entry name" value="Metalloprtase-TldD/E_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045570">
        <property type="entry name" value="Metalloprtase-TldD/E_cen_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002510">
        <property type="entry name" value="Metalloprtase-TldD/E_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035068">
        <property type="entry name" value="TldD/PmbA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036059">
        <property type="entry name" value="TldD/PmbA_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01523">
        <property type="entry name" value="PmbA_TldD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19289">
        <property type="entry name" value="PmbA_TldD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19290">
        <property type="entry name" value="PmbA_TldD_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111283">
        <property type="entry name" value="SSF111283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PmbA_TldD" evidence="2">
        <location>
            <begin position="24"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="domain" description="PmbA_TldD_M" evidence="4">
        <location>
            <begin position="119"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="domain" description="PmbA_TldD_C" evidence="3">
        <location>
            <begin position="231"/>
            <end position="447"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005836"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01523"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF19289"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF19290"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH23535.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="448" mass="47389" checksum="7DCB191C94498AEF" modified="2017-03-15" version="1">MTRSLSDITQSMIDAALKAGADSCDALAVDGTSVSISVLNGALEHAERSEGIDIGLRVLVGQKQANVSSSDVNPETISEMSERAVAMAKEAPDDPNLGLADASQLATSLDTDTLELFDPSEEPDPAQLQDFALRAEAAALKNDGISQVQSASAGYGRRRVHMTASNGFSAGYARTDSGLSCVAISGEGTAMERDYDYDSRVFRADMRNAEEIGTRAAARAVERYGARKPKTGAYPVLFDERIASSLVGHLLQAVNGAAIARGSSWLRDALGEQVLPKELSIIEDPHRVRAFSSRLFDAEGLPTQRRAVVKNGVLQGWTLDLANARKLGMDSTASAVRGTGSPPSPGLSNIALTQGDKSRSELLFEMGTGLLITSMIGSTINPNTGDYSRGASGFWVENGEITYPVNECTVAGNLRDMLMNITPANDAQPHLSRVVPSILVEGLTLAGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RE59</accession>
    <name>A0A1M5RE59_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Zinc protease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2530</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase M16 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24420.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901632.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2530"/>
    <dbReference type="EnsemblBacteria" id="SHH24420">
        <property type="protein sequence ID" value="SHH24420"/>
        <property type="gene ID" value="SAMN05444003_2530"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011249">
        <property type="entry name" value="Metalloenz_LuxS/M16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011765">
        <property type="entry name" value="Pept_M16_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007863">
        <property type="entry name" value="Peptidase_M16_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00675">
        <property type="entry name" value="Peptidase_M16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05193">
        <property type="entry name" value="Peptidase_M16_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63411">
        <property type="entry name" value="SSF63411"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0645">Protease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5011979700" evidence="2">
        <location>
            <begin position="20"/>
            <end position="436"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M16" evidence="3">
        <location>
            <begin position="40"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M16_C" evidence="4">
        <location>
            <begin position="187"/>
            <end position="360"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00675"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF05193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH24420.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="436" mass="47071" checksum="1CB6B706DE59D02D" modified="2017-03-15" version="1">MRRLFLSLCFVFGATTASAAIEIEEFTSPGGIDVWMVEEDSIPFTALEIRIRGGSALDAPGKRGATNLMMALIEEGAGDMDAQAFQTARENLAASYGFRAFDDTISISAEFLTENRDEAVALLREALVNPRFDQSAIDRVRAQIISGINSDAKNPNRIAGSAFDAAAFGDHPYGSSQDGTIESVNALTREDILDAHEAALTRDRMFVSAVGDITQEELGALVDDLLGDLPESGPALPEYVDFGLGPGITVIDYETPQSVALFGHKGIKRDDDDFFAAYIINHVLGAGGFESRLTTEVREKRGLTYGIGTYLIPKFHAELYLGSVASSNETIADAIEVTKAEWARMAEEGMTAEELADAKKFITGEYPLRFDGNAEIASILAGMQMTGLPSDYVINRNGYVEEVTLDDINRVAGELLDPEALHFVVVGQPVGLETTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RFY8</accession>
    <name>A0A1M5RFY8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Amino acid ABC transporter substrate-binding protein, PAAT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2567</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25184.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901685.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2567"/>
    <dbReference type="EnsemblBacteria" id="SHH25184">
        <property type="protein sequence ID" value="SHH25184"/>
        <property type="gene ID" value="SAMN05444003_2567"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015276">
        <property type="term" value="F:ligand-gated ion channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001320">
        <property type="entry name" value="Iontro_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001638">
        <property type="entry name" value="Solute-binding_3/MltF_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00060">
        <property type="entry name" value="Lig_chan"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00497">
        <property type="entry name" value="SBP_bac_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00062">
        <property type="entry name" value="PBPb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00079">
        <property type="entry name" value="PBPe"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009913456" evidence="3">
        <location>
            <begin position="23"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="133"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="198"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="domain" description="PBPb" evidence="4">
        <location>
            <begin position="24"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="domain" description="PBPe" evidence="5">
        <location>
            <begin position="24"/>
            <end position="350"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00079"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH25184.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="355" mass="39201" checksum="77AB690255947853" modified="2017-03-15" version="1">MTRLVCWVFSAALIVVASVAQAQDLRVATVEREPFSMMSEGGFEGFSIDLMNRVTEDLGLSVEYILYDSFSGMLDAVETEDVDAAIANISITADRETRMDFSQPMFDSGIQVMVQSEQGMSPSVFTALFTKQIGIAVLSALALLFGGGMLMWVFERKAQPYFDRPLKDAPFPAFWWALNLVVNGGFEERMPQSRAGRFFAVGLVISSLFIVSIFVAQITAALTINAISENIQDLNDLDGRRIGTIEGSTSASFLDVRDLSHIGFADTEALFQEYEAGGIDAVVFDSPILAYYVAERSGGDARLLDRVYRAENYGIAFPTDSELRERVDRVLLGLREQGVFDELTTKWFGTAYSGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RHV6</accession>
    <name>A0A1M5RHV6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2602</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH25917">
        <property type="protein sequence ID" value="SHH25917"/>
        <property type="gene ID" value="SAMN05444003_2602"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH25917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="71" mass="7832" checksum="9F35C3737C15D867" modified="2017-03-15" version="1">MTKKRFLFLRVPSSGPKALAGPPNDFSSLNEAEARLRDITSGNLKAHHTYLEIIEYTGDKVAFLNTKGILA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RIH9</accession>
    <name>A0A1M5RIH9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="9">2-octaprenyl-6-methoxyphenol hydroxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_2588</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2">Cofactor biosynthesis; ubiquinone biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the UbiH/COQ6 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25623.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901717.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2588"/>
    <dbReference type="EnsemblBacteria" id="SHH25623">
        <property type="protein sequence ID" value="SHH25623"/>
        <property type="gene ID" value="SAMN05444003_2588"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00232"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016709">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006744">
        <property type="term" value="P:ubiquinone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002938">
        <property type="entry name" value="FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018168">
        <property type="entry name" value="Ubi_Hdrlase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010971">
        <property type="entry name" value="UbiH/COQ6"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01494">
        <property type="entry name" value="FAD_binding_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01988">
        <property type="entry name" value="Ubi-OHases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01304">
        <property type="entry name" value="UBIH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0274">FAD</keyword>
    <keyword evidence="4" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="7" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD_binding_3" evidence="8">
        <location>
            <begin position="6"/>
            <end position="324"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005349"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH25623.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="405" mass="42964" checksum="EA61C2E319FE0DEC" modified="2017-03-15" version="1">MDTHSDILIVGGGLNGPALALALGNAGFSVRIVDSLPKDVREDAEFDGRAYALALGSQRLLSGIGVWPTVEPNAQPMLEIKVTDGRAGEGPSPWMMHFDHAEIDEGPMGYLVEDRHLRRAFLSAMEDHPKLEHIAPATVVDQTAEAGRISIALADGSTLSASVLIGSDGRSSGTAQRAGIKRTAWDYGQTALVCAAEHAKPHGGIAHQFFMPGGPLAILPLTGNRSAIVWSEDRAKAHHVAAFDDDGFLDALRPAFGDFLGEITLCGERFTYPLGLSIATSLVADRVALIGDAAHGIHPIAGQGLNAGLRDVAALVDVLIDARKRGEDFGGAQALARYQSWRQFDTTKLAMATDGFNRLFSNDNPLLRAARDIGMGVINASPALRRAFIREAAGLNGDLPSLMAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RJA8</accession>
    <name>A0A1M5RJA8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Permease of the drug/metabolite transporter (DMT) superfamily</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2622</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26341.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901774.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2622"/>
    <dbReference type="EnsemblBacteria" id="SHH26341">
        <property type="protein sequence ID" value="SHH26341"/>
        <property type="gene ID" value="SAMN05444003_2622"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="32"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="66"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="94"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="124"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="147"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="178"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="203"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="232"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="260"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="6"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="147"/>
            <end position="277"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH26341.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="319" mass="34464" checksum="6ECC20674275AFC4" modified="2017-03-15" version="1">MSPNVRGALFALAAFAVFSTHDVIIKILGGTYSPIQVVFFSVLLSFPLATVMLMRDTTADTLIPRHPWWLALRTMAAVVTGVSAFYAFSVLPLAQTYAIIFASPLIITVLAIPVLGERVRLRRWIAVLVGLCGVLVVLRPGAEPLTLGHLAALAAALGGSVAAIVVRKIGAEERPVVMLLYPMVVNFVVMAALLPWVYEPMPIEHLGLLGIVALFAWTASRMIIVAYQSGEAAIIAPMQYSQILWASVYGFLFFDEIIDAPTAIGAGIIIASGLYIVLRESRTDASENTPVLRSRSRPETGTTPRVSLIMRARGKTPPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RJM6</accession>
    <name>A0A1M5RJM6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2626</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26444.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2626"/>
    <dbReference type="EnsemblBacteria" id="SHH26444">
        <property type="protein sequence ID" value="SHH26444"/>
        <property type="gene ID" value="SAMN05444003_2626"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="34"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH26444.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="75" mass="7940" checksum="5E00D3F2721CAA51" modified="2017-03-15" version="1">MLDLDLLFVLGICLGVLILPAVVSAILDGRAPRTPALLLIISALMIGYAVLQKPTGYSLASIPDVFANVIARYTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S1B7</accession>
    <name>A0A1M5S1B7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Deoxyribose-phosphate aldolase</fullName>
            <ecNumber evidence="2">4.1.2.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">2-deoxy-D-ribose 5-phosphate aldolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2804</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>2-deoxy-D-ribose 5-phosphate = acetaldehyde + D-glyceraldehyde 3-phosphate</text>
            <dbReference type="Rhea" id="RHEA:12821"/>
            <dbReference type="ChEBI" id="CHEBI:15343"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="ChEBI" id="CHEBI:62877"/>
            <dbReference type="EC" id="4.1.2.4"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="4.1.2.4" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32239.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2804"/>
    <dbReference type="EnsemblBacteria" id="SHH32239">
        <property type="protein sequence ID" value="SHH32239"/>
        <property type="gene ID" value="SAMN05444003_2804"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004139">
        <property type="term" value="F:deoxyribose-phosphate aldolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009264">
        <property type="term" value="P:deoxyribonucleotide catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00959">
        <property type="entry name" value="DeoC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011343">
        <property type="entry name" value="DeoC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002915">
        <property type="entry name" value="DeoC/FbaB/LacD_aldolase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10889">
        <property type="entry name" value="PTHR10889"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01791">
        <property type="entry name" value="DeoC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01133">
        <property type="entry name" value="DeoC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00126">
        <property type="entry name" value="deoC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00032755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH32239.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="328" mass="35405" checksum="E4AD81B4669EF1C2" modified="2017-03-15" version="1">MQTAIDESLQLPQIQEPRNDGMPLDLDWVASVQANTSAIERRAKTLPGRRSVKKSHQAAWLCKAISCMDLTTLSGDDTEARVRRLCAKARQPVSPVILDKIGMTGLTTGAVCVYHDMVPTAVDALRGTSIPVAAVSTGFPAGLSPFHLRISEIGESVAAGAEEIDIVISRRHVLTGNWQALYDEMKEMRAACGHAHVKAILATGELGTLRNVAKASLVCMMAGADFIKTSTGKEPVNATLPVTLAMIRAIRAYEARTGLKVGYKPAGGISKAKDAITYLAMIKDELGGRWLQPDLFRFGASSLLGDIERQLEHYVTGNYSANWRHPIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S1V6</accession>
    <name>A0A1M5S1V6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 9 10">Xylose isomerase</fullName>
            <ecNumber evidence="2 9 10">5.3.1.5</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">xylA</name>
        <name evidence="14" type="ORF">SAMN05444003_2810</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8 9 10">
            <text>alpha-D-xylose = alpha-D-xylulofuranose</text>
            <dbReference type="Rhea" id="RHEA:22816"/>
            <dbReference type="ChEBI" id="CHEBI:28518"/>
            <dbReference type="ChEBI" id="CHEBI:188998"/>
            <dbReference type="EC" id="5.3.1.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="9">Binds 2 magnesium ions per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9 11">Homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9 11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 9 10">Belongs to the xylose isomerase family.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.5" evidence="2 9 10"/>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32391.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902107.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2810"/>
    <dbReference type="EnsemblBacteria" id="SHH32391">
        <property type="protein sequence ID" value="SHH32391"/>
        <property type="gene ID" value="SAMN05444003_2810"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009045">
        <property type="term" value="F:xylose isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042732">
        <property type="term" value="P:D-xylose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00455">
        <property type="entry name" value="Xylose_isom_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013452">
        <property type="entry name" value="Xylose_isom_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001998">
        <property type="entry name" value="Xylose_isomerase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00688">
        <property type="entry name" value="XYLOSISMRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02630">
        <property type="entry name" value="xylose_isom_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51415">
        <property type="entry name" value="XYLOSE_ISOMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 9 10" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 9 10" id="KW-0413">Isomerase</keyword>
    <keyword evidence="9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 9 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9 10" id="KW-0859">Xylose metabolism</keyword>
    <feature type="domain" description="AP_endonuc_2" evidence="13">
        <location>
            <begin position="118"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="411"/>
            <end position="433"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="12">
        <location>
            <begin position="412"/>
            <end position="433"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="99"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="102"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="230"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="266"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="269"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="294"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="305"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="307"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="337"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005765"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00018232"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022629"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00033659"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00455"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU000609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU000610"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="SHH32391.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="433" mass="48666" checksum="56135126005F47F7" modified="2017-03-15" version="1">MTDFFKGISKIAYEGPETTNEFAFRHYNADEVVMGKTLKDHLRFSCAYWHSFAWPGGDPFGGQTFERPWFGETMALAKLKADFAFEMFDILGVPYFCFHDADVRPEGTNFAENTRNLEEIVDYFAQKMDDTGMKLLWGTANLFSNRRFMAGAATNPDPDVFAYSAATIKTCMDATIKLGGENYVLWGGREGYETLLNTDMGRERKQAGRMLEMVVDYKHKTGFKGAILIEPKPQEPTKHQYDYDVATVYGFLKDFGLENEVQVNIEQGHAILAGHTFEHELATARELGIFGSIDMNRNDYQSGWDTDQFPNNVPEMALAFYEVLRAGGFTTGGTNFDAKLRRQSLDPEDLILAHVGGMDACAAGLKAAAAMIEDGALEEARSARYSGWDTKRAQNLLVSDLEGVEQFVRDNDINPQPRSGRQERLENLVNSYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S2H6</accession>
    <name>A0A1M5S2H6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NAD(P)H-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2823</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32719.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902126.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH32719">
        <property type="protein sequence ID" value="SHH32719"/>
        <property type="gene ID" value="SAMN05444003_2823"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016040">
        <property type="entry name" value="NAD(P)-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13460">
        <property type="entry name" value="NAD_binding_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD(P)-bd_dom" evidence="1">
        <location>
            <begin position="8"/>
            <end position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH32719.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="232" mass="25697" checksum="DEB73B61EDE24F0C" modified="2017-03-15" version="1">MKKVCIIGISGKLGQYMTQHCLDLGYEVVGVCRPQSVHKLDRFKDQITVFPGRTDDRAVVQQAVKGCDGVLTVLAPWGVNDYASGTAQAVMDFAEPDARLIFSCGWHITKDGKDTYGLKIRSIVWLFSWLGPLLRLVDLNDQVEATNRIFASDRLWTVVRGSDLEEGESDGLPVWAEHVGDPVLASNMTKRIDFALFMVHALRDDRLIHQAPAIVGRNTASAKAELLHQHAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SH35</accession>
    <name>A0A1M5SH35_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">LAO/AO transport system kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2968</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the SIMIBI class G3E GTPase family. ArgK/MeaB subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37854.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2968"/>
    <dbReference type="EnsemblBacteria" id="SHH37854">
        <property type="protein sequence ID" value="SHH37854"/>
        <property type="gene ID" value="SAMN05444003_2968"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005129">
        <property type="entry name" value="GTPase_ArgK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23408">
        <property type="entry name" value="PTHR23408"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00750">
        <property type="entry name" value="lao"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="AAA" evidence="3">
        <location>
            <begin position="84"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009625"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH37854.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="358" mass="39066" checksum="409CD07EAAE95CF9" modified="2017-03-15" version="1">MLIRARPGGRGRARTDRKRSGLDLSDETRQNACMASDKIKELAEQIRTGNRRALARAITLVESGREDHRAQALDLLQASGSDRQALRIGLSGTPGVGKSTFIESFGLMLTGMGKTVAVLAVDPSSARSGGSILGDKTRMDLLSRDPKAFIRPSPSQSQLGGVARRTREAVALCEAAGYDIVLIETVGVGQSETVVAQMSDLFLLLLAPAGGDELQGVKRGIMEIADLILVNKADGDLKPQALRTYADYAGALRLLRKRPQDPDGFPKALTVSALEADRLQEAWEAMSELMAWRRTQGVWDRTRTDQARYWFSEEVHIQLLERLHRDPEIRAHIAMMEDEVARGAISATAAAADVIRKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SHC1</accession>
    <name>A0A1M5SHC1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Pyrroline-5-carboxylate reductase</fullName>
            <shortName evidence="2">P5C reductase</shortName>
            <shortName evidence="2">P5CR</shortName>
            <ecNumber evidence="2">1.5.1.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">PCA reductase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">proC</name>
        <name evidence="5" type="ORF">SAMN05444003_2942</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>L-proline + NAD(+) = 1-pyrroline-5-carboxylate + 2 H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:14105"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15893"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:60039"/>
            <dbReference type="EC" id="1.5.1.2"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>L-proline + NADP(+) = 1-pyrroline-5-carboxylate + 2 H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:14109"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15893"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:60039"/>
            <dbReference type="EC" id="1.5.1.2"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-acid biosynthesis; L-proline biosynthesis; L-proline from L-glutamate 5-semialdehyde: step 1/1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the pyrroline-5-carboxylate reductase family.</text>
    </comment>
    <dbReference type="EC" id="1.5.1.2" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37293.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902353.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2942"/>
    <dbReference type="EnsemblBacteria" id="SHH37293">
        <property type="protein sequence ID" value="SHH37293"/>
        <property type="gene ID" value="SAMN05444003_2942"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00098">
        <property type="reaction ID" value="UER00361"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004735">
        <property type="term" value="F:pyrroline-5-carboxylate reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055129">
        <property type="term" value="P:L-proline biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01925">
        <property type="entry name" value="P5C_reductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028939">
        <property type="entry name" value="P5C_Rdtase_cat_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029036">
        <property type="entry name" value="P5CR_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000304">
        <property type="entry name" value="Pyrroline-COOH_reductase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11645">
        <property type="entry name" value="PTHR11645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03807">
        <property type="entry name" value="F420_oxidored"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14748">
        <property type="entry name" value="P5CR_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000193">
        <property type="entry name" value="Pyrrol-5-carb_rd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00112">
        <property type="entry name" value="proC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2" id="KW-0521">NADP</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2" id="KW-0641">Proline biosynthesis</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="F420_oxidored" evidence="3">
        <location>
            <begin position="11"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="domain" description="P5CR_dimer" evidence="4">
        <location>
            <begin position="160"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01925"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03807"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF14748"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH37293.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="270" mass="27389" checksum="58F6C57DB38166C3" modified="2017-03-15" version="1">MEEIAQNGMVLLGCGKMGSAMLAGWLDGGLPASSVYVIDPMPSDWVRGTGVNVNTDLPETPKVALIAVKPQMMGAALPSMQALGNGDTLFISVAAGTPIDTFEDVLGDQTPIVRAMPNTPAAIGQGITALVGNTHVDDAALGLAEQLLNAVGQTVRLDTEGQIDAVTGVSGSGPAYVFHLIETLAAAGEAQGLPADLSMQLAKATVAGAGALAMTADEDPSQLRVNVTSPNGTTQAALEVLMSETAGFPALLNRAVAAATDRSKELARDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SJW3</accession>
    <name>A0A1M5SJW3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transcriptional regulator, MerR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_3013</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38844.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902457.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3013"/>
    <dbReference type="EnsemblBacteria" id="SHH38844">
        <property type="protein sequence ID" value="SHH38844"/>
        <property type="gene ID" value="SAMN05444003_3013"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000551">
        <property type="entry name" value="MerR-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015358">
        <property type="entry name" value="Tscrpt_reg_MerR_DNA-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00376">
        <property type="entry name" value="MerR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09278">
        <property type="entry name" value="MerR-DNA-bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00422">
        <property type="entry name" value="HTH_MERR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50937">
        <property type="entry name" value="HTH_MERR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH merR-type" evidence="5">
        <location>
            <begin position="5"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="86"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH38844.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="122" mass="14486" checksum="DAF71ECBA79CAF03" modified="2017-03-15" version="1">MTDTRLTFKEMCAKFDVTPRTLRYYEYIELLAPEKEGRSRFYGSREIARMTLIMRGRRWGFALEDIRQWLLIYEDEGTEAQMQSWVALATGQLEELREQRKQLDIAIEELEKQRDEVAASLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SLL4</accession>
    <name>A0A1M5SLL4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">dTTP/UTP pyrophosphatase</fullName>
            <shortName evidence="3">dTTPase/UTPase</shortName>
            <ecNumber evidence="3">3.6.1.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Nucleoside triphosphate pyrophosphatase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">Nucleotide pyrophosphatase</fullName>
            <shortName evidence="3">Nucleotide PPase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_3039</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>H2O + UTP = diphosphate + H(+) + UMP</text>
            <dbReference type="Rhea" id="RHEA:29395"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:46398"/>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
            <dbReference type="EC" id="3.6.1.9"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>dTTP + H2O = diphosphate + dTMP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:28534"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37568"/>
            <dbReference type="ChEBI" id="CHEBI:63528"/>
            <dbReference type="EC" id="3.6.1.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the Maf family. YhdE subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.9" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH39404.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902487.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3039"/>
    <dbReference type="EnsemblBacteria" id="SHH39404">
        <property type="protein sequence ID" value="SHH39404"/>
        <property type="gene ID" value="SAMN05444003_3039"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036218">
        <property type="term" value="F:dTTP diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035529">
        <property type="term" value="F:NADH pyrophosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036221">
        <property type="term" value="F:UTP diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009117">
        <property type="term" value="P:nucleotide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00555">
        <property type="entry name" value="Maf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00528">
        <property type="entry name" value="Maf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029001">
        <property type="entry name" value="ITPase-like_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003697">
        <property type="entry name" value="Maf-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43213">
        <property type="entry name" value="PTHR43213"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02545">
        <property type="entry name" value="Maf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006305">
        <property type="entry name" value="Maf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52972">
        <property type="entry name" value="SSF52972"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00172">
        <property type="entry name" value="maf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 3" id="KW-0546">Nucleotide metabolism</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="3">
        <location>
            <position position="77"/>
        </location>
    </feature>
    <feature type="site" description="Important for substrate specificity" evidence="3">
        <location>
            <position position="20"/>
        </location>
    </feature>
    <feature type="site" description="Important for substrate specificity" evidence="3">
        <location>
            <position position="78"/>
        </location>
    </feature>
    <feature type="site" description="Important for substrate specificity" evidence="3">
        <location>
            <position position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH39404.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="201" mass="21773" checksum="40AD230EBA9E9454" modified="2017-03-15" version="1">MTALPPDPNLKLILGSGSPRRRELIGQLGLVAHDVRAPDIDEDVRAGEKPRDYVNRIALEKARTVSIADDEVVLCADTTVALGRRIMGKPEDASQAGQFLRAMSGRRHQVITALAVRREERMWQRDVVSQVKMKALSDREIGWYLATGDWQGKAGGYGIQGPASAFIPWIGGSFHAVMGLPLPETAALLTAAGLPVMEIAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SSF7</accession>
    <name>A0A1M5SSF7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Histidine kinase</fullName>
            <ecNumber evidence="3">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">SAMN05444003_3075</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41367.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902610.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3075"/>
    <dbReference type="EnsemblBacteria" id="SHH41367">
        <property type="protein sequence ID" value="SHH41367"/>
        <property type="gene ID" value="SAMN05444003_3075"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036641">
        <property type="entry name" value="HPT_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000700">
        <property type="entry name" value="PAS-assoc_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008207">
        <property type="entry name" value="Sig_transdc_His_kin_Hpt_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13426">
        <property type="entry name" value="PAS_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47226">
        <property type="entry name" value="SSF47226"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50894">
        <property type="entry name" value="HPT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50113">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="14" id="KW-0418">Kinase</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 7" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="14" id="KW-0808">Transferase</keyword>
    <keyword evidence="8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="182"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="11">
        <location>
            <begin position="217"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="12">
        <location>
            <begin position="296"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="9">
        <location>
            <begin position="364"/>
            <end position="585"/>
        </location>
    </feature>
    <feature type="domain" description="Response regulatory" evidence="10">
        <location>
            <begin position="605"/>
            <end position="722"/>
        </location>
    </feature>
    <feature type="domain" description="HPt" evidence="13">
        <location>
            <begin position="739"/>
            <end position="830"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="7">
        <location>
            <position position="654"/>
        </location>
    </feature>
    <feature type="modified residue" description="Phosphohistidine" evidence="6">
        <location>
            <position position="778"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="SHH41367.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="830" mass="91565" checksum="448A78EEDA878D4B" modified="2017-03-15" version="1">MSQFQESRRRGRQIFMILATLLCIAAVVLFARNVREEIDQLEAARSDNIQWTLSQIEVEFLEYWIALASAVEKENGDLISVRREFDVFYSRITTVNNGQLFSGLRLEEGFSEHLNLVNAFLTSSVAFIDGSDEELLDSLKDMQTATENVRPEVRALANSGLNFFAELADRQRLAFSAALARLGYIVAGLIVLLSGLILYLSWLNTRSRKQQRDTLEVNERINTIISTSLDGVIVANIRGEILEFNNASEEIFGHYAEDVFGKNIGDVIVPEHLKAGHEAGMQRMKENGEKHVVGHGRVQLEAVRKNGELFPVELAIQSAETEDGELFIAFLRDISEKVAAELELVQARDKALESEKAKSEFLAVMSHEIRTPLNGLLGNLSLLKDTNIGKDQREYIANMETSGRLLLSHVTGVLDITRYDSGSLEQSRRPMEIEPFLQDLLDSQSGQADAHNTQLEWVWKGKSVGTVNSDPDLLQPVLLNLIGNAVKFTKNGQVRIEIEKVGGSEGQPELEFRVSDNGIGIEPEKLDMVFDDFVTGNISFNRSSGGTGLGLGIARRYAEALGGTVTVESKIGKGSTFTFRAPFHTLMDTDTADELEKTVKQKPLNILVVEDNEINSQVAREMLKKMGHSVTEAADGRAGVEAAEDTAFDLIFMDITMPVMDGREATRTIRSSQGKSANAPIVALTANVVEADREAIISDGINEVLSKPISRTKLAEALRDVIAPTSHSVLDTDQLQELLELLGTEGFETTLARFRDEGEAFLASLPALEGKDLIESAHKFAGSAAMIGASELHEALKSLEGFAKNGEFNHIQSTKRTLLEVWARVREELS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SSP9</accession>
    <name>A0A1M5SSP9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Alginate O-acetyl transferase AlgF</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3085</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41559.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902624.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3085"/>
    <dbReference type="EnsemblBacteria" id="SHH41559">
        <property type="protein sequence ID" value="SHH41559"/>
        <property type="gene ID" value="SAMN05444003_3085"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH41559.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="197" mass="20641" checksum="50AD5221F4D20729" modified="2017-03-15" version="1">MNLHATHIAAAAILTTVSPADANDEALYGAAVPEDAVFVRFLAEDPAKDLTAFGWTFETEPEQVAYSVVSASLLPEAPASRFSTVVVTTEGEGIVIPEPDRTSASKVHLLLLNATVNAVSLVADGGAIEVIRPTRFGAANIRAVNPIKAEFSVVQVPSQTVLGTFDVSMSRGEDLSFIVTNDGVELVPTSYGAVITD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T3U2</accession>
    <name>A0A1M5T3U2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Methyltransferase</fullName>
            <ecNumber evidence="4">2.1.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_3224</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the trimethylamine methyltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.-" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45395.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902875.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3224"/>
    <dbReference type="EnsemblBacteria" id="SHH45395">
        <property type="protein sequence ID" value="SHH45395"/>
        <property type="gene ID" value="SAMN05444003_3224"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015948">
        <property type="term" value="P:methanogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.480">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038601">
        <property type="entry name" value="MttB-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010426">
        <property type="entry name" value="MTTB_MeTrfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06253">
        <property type="entry name" value="MTTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037567">
        <property type="entry name" value="MTTB_MeTrfase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4 5" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR037567"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH45395.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="516" mass="56804" checksum="A35D99AF85C73160" modified="2017-03-15" version="1">MSVDAVGTTRRGRGARRAARQVLDTQMLPALKRGIPLTEPMGAEQIARIDAASMDILENVGVVFRDDIALADWKVAGADVRGETVHLDRGLVRELIKTIPASFTYHARNPANNLPFGNDHAIFVPMTGAPYLRDLEDVRRNPTLDDLANFHKLSHMLPAMHSSAHHIVEPYDHPISQRHLRITYSSMKHSDKTFMGMTTSPKNAEDVMDMCAILFGKEFMETHVVVTGNCNGNSPLVWDETMLGAMRAFARCNQPVLCSPFVLGGANTPASVAPTVAQLNAEALSALAYTQVIRKGAPAIYGHYLSTVSMKSGAPMAGTPEISLMNMMIGQMARFYDVPWRTSNTLGGAKTFDAQAGYESASTLMAVMMSGANYIWHSAGWNEAGMHCSMAKFVVDAEQCAMAHRMASGINWDDFDEAIAAVSDVGPGGHYLGHPHTLENFQRAFFMPEMFDNNSIEQWQAEGSVEINERAMSRAKDLLNAYEEPKMDEAVNEELLDYIARREREIPAADALNQDY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T4H0</accession>
    <name>A0A1M5T4H0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Carbon-monoxide dehydrogenase large subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3232</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45598.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902885.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3232"/>
    <dbReference type="EnsemblBacteria" id="SHH45598">
        <property type="protein sequence ID" value="SHH45598"/>
        <property type="gene ID" value="SAMN05444003_3232"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000674">
        <property type="entry name" value="Ald_Oxase/Xan_DH_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036856">
        <property type="entry name" value="Ald_Oxase/Xan_DH_a/b_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016208">
        <property type="entry name" value="Ald_Oxase/xanthine_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008274">
        <property type="entry name" value="AldOxase/xan_DH_Mopterin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037165">
        <property type="entry name" value="AldOxase/xan_DH_Mopterin-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11908">
        <property type="entry name" value="PTHR11908"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01315">
        <property type="entry name" value="Ald_Xan_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02738">
        <property type="entry name" value="Ald_Xan_dh_C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01008">
        <property type="entry name" value="Ald_Xan_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54665">
        <property type="entry name" value="SSF54665"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56003">
        <property type="entry name" value="SSF56003"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ald_Xan_dh_C" evidence="2">
        <location>
            <begin position="19"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM01008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH45598.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="786" mass="83798" checksum="D78300A4352F969A" modified="2017-03-15" version="1">MTDGIGARVKRKEDKRYTTGSGKYTDDVRNENQAYAAFVRSPHAHANVTGIDASAAEGMPGVVAVLNGAELTGDGIGNIICGWAITSKDDTPMNMGAWSALATEKVRYVGDAVAVVIADSMEEARNAAEAVEVSYDELPAVVDTATAMDAGAAQVHENAPNNLIFDWELGDEAATDAGIAAASHVTKIDLTNNRLSPNPMEPRSAVATFDPAEEHYTLYTTSQNPHVARLVLSAFYQVAPEHKLRVIAPDVGGGFGSKIYIYPEEIVCLWASMKTKRSVKWTSTRSEAFLTDAHGRDHVTHAEMGFDADGKITAFKIDTIANLGAYMSLFSSAVPTYLYATLLAGQYHMPAIHCNVKTVYTNTTPVDAYRGAGRPEACYLIERVMEKAAREMGMDPAELRRKNFILEFPYQTPVIMNYDCGDFPGHLDKAQAAADVAGFAARKAEAASRGKLRGLGYSTYIEACGIAPSQAVGSLGAGVGLWESAEVRVNPVGTIEVLTGSHSHGQGHETSFAQVVADRFDLPVENIQIVHGDTDKVQFGMGTYGSRSGPVGLSAIFKACDKVELKVKQIAAHLLDASADDVFCEGGEVKVKGTNKSLGWHEIGLAAYTAHNLPEDMEPGLKEGAFYDPVNFSFPAGCHICEVEIDPETGVVEIVKFTAADDFGTLINPLIVEGQVHGGIGQGVGQAMLEQVIYGDDGQLLTGSYMDYTMPRADNLPSFDVEHNSVPSPSNPLGVKGCGEAGAIGSPPAIMNAITDAIGTENLEMPATPSNVWQAIQANQIKHAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T4P4</accession>
    <name>A0A1M5T4P4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Carbohydrate ABC transporter membrane protein 2, CUT1 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_3238</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45727.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902895.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3238"/>
    <dbReference type="EnsemblBacteria" id="SHH45727">
        <property type="protein sequence ID" value="SHH45727"/>
        <property type="gene ID" value="SAMN05444003_3238"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="72"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="110"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="141"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="189"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="247"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="73"/>
            <end position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH45727.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="280" mass="31931" checksum="2E401DB2AD9AA225" modified="2017-03-15" version="1">MMDRYTKLQMAGIYFAVTIFLIFILLPFFEMFMASLRPLEHLFRSPYQFWSDDFSFQAYSDMWETVPLLGRYIWNSVYIATMVTLLTMIFIIPAAYAYARLDFPFKNASLAIFLGVNMFTGAVLLIPLYRVLRTMGLLNTYWAMIVPGVAFLIPTGIWLLRSYLEKIPRELEEAAYVDGASRMYTLRRVVLPLAVPGLIVVGVAVFIGAYAQQFLFAITFNQQRELQPLPAGLFEFIGYQDVTWNQMMAAALTGILPVMVIFLFLQKFLVAGLTAGAVKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T9U8</accession>
    <name>A0A1M5T9U8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Acetolactate synthase-1/2/3 large subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_3293</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the TPP enzyme family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000009">
        <property type="protein sequence ID" value="SHH47492.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902996.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000009.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3293"/>
    <dbReference type="EnsemblBacteria" id="SHH47492">
        <property type="protein sequence ID" value="SHH47492"/>
        <property type="gene ID" value="SAMN05444003_3293"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044281">
        <property type="term" value="P:small molecule metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012000">
        <property type="entry name" value="Thiamin_PyroP_enz_cen_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012001">
        <property type="entry name" value="Thiamin_PyroP_enz_TPP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000399">
        <property type="entry name" value="TPP-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045229">
        <property type="entry name" value="TPP_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011766">
        <property type="entry name" value="TPP_enzyme-bd_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18968">
        <property type="entry name" value="PTHR18968"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02775">
        <property type="entry name" value="TPP_enzyme_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00205">
        <property type="entry name" value="TPP_enzyme_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02776">
        <property type="entry name" value="TPP_enzyme_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="SSF52467"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00187">
        <property type="entry name" value="TPP_ENZYMES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0786">Thiamine pyrophosphate</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TPP_enzyme_N" evidence="6">
        <location>
            <begin position="10"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="domain" description="TPP_enzyme_M" evidence="4">
        <location>
            <begin position="208"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="domain" description="TPP_enzyme_C" evidence="5">
        <location>
            <begin position="415"/>
            <end position="567"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007812"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU362132"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH47492.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="597" mass="63495" checksum="50AC5926196311AA" modified="2017-03-15" version="1">MDGGMIADKTVAEHIVDYLARRDTKHVFGLCGHTNIAVLAALADSPIDFITVRHEQIASHAADAYARVQGGASVVLSHLSPGLTNCATGVANAALDCIPMVVIAGDIPTHYYGKHPHQEVNLHADAAQWEIYRPFVKRAWRVDRADLMAEILEKAFHLAESGQPGPVLVNVPMDIFSEVIPSDTFDRVAQNTKSLKKPSIDDETAGDIVEALAKAENPVAYVGGGILLAKASDELDAFVSHMGLPVAHSLMGKGALSDAHPLVMGMTGFWGTELVNQSCLNADYVFAVGTRFKEADCSSWYPGYTFNIGAEGNDTKVIHIDIEPQEIGRNYPTEIGVVADARSALRVLNRVAKEMYPNGIDRTEKTAEIASFRETFKASNLDMQTSDAFPLMPERILADTRGALPDDAIITTDVGWNKNGVGQQFDILTPGSILTPGGFATMGFGPPAAIGAKLAAPERVVISLVGDGGFGQNPSMLATAVELNLGIVWLVMNNNAFGTIAGLQKAHYGLTYGTTFPGSAEAPTNGPGYAEIAKAYGAEGQRITSADELLPALKAAIASGKPTVLDVPMINNPTPTTGHWNILDIYSPNDDVSHVAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TBR7</accession>
    <name>A0A1M5TBR7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3316</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000010">
        <property type="protein sequence ID" value="SHH48154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072903039.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000010.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH48154">
        <property type="protein sequence ID" value="SHH48154"/>
        <property type="gene ID" value="SAMN05444003_3316"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH48154.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="140" mass="15485" checksum="CB251B5D546C965B" modified="2017-03-15" version="1">MIRFLKSTFFILTLIISLTAFSISTTIWALSLASQVTVLSANATAQAVKNRRQIAKIAAKARLRRIVAIVPFAGIAAVGYFEDQDRREWLEANPDKTNADYACELAELTGEVMDEVLSELPMEISLPNWAVPECPNNPET</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TDS7</accession>
    <name>A0A1M5TDS7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sulfopyruvate decarboxylase subunit beta</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3330</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000015">
        <property type="protein sequence ID" value="SHH48846.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072903054.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000015.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3330"/>
    <dbReference type="EnsemblBacteria" id="SHH48846">
        <property type="protein sequence ID" value="SHH48846"/>
        <property type="gene ID" value="SAMN05444003_3330"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03372">
        <property type="entry name" value="TPP_ComE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022494">
        <property type="entry name" value="Sulfopyruvate_deCO2ase_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011766">
        <property type="entry name" value="TPP_enzyme-bd_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02775">
        <property type="entry name" value="TPP_enzyme_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03846">
        <property type="entry name" value="sulfopy_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TPP_enzyme_C" evidence="1">
        <location>
            <begin position="35"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH48846.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="184" mass="19505" checksum="BAE6830C295B1045" modified="2017-03-15" version="1" fragment="single">MIRSEILKEIAPILKDQLIVCNIGIPSQELHAIMDQPSNFYMLGTMGLASSIGLGVALAQDKTVISIDGDGSVLTNLGTLPTIGNNMPKNYILMIIDNGSYGSTGDQPTYTGRKTDLAAMARAAGCDNVVEVQDVDTGTALQEAIDAQVGTVMIVKCDSGNAKMPVITMDPVIIKDRFMKAIEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L1R1</accession>
    <name>A0A1M5L1R1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cold-shock DNA-binding protein family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0053</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59052.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898388.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0053"/>
    <dbReference type="EnsemblBacteria" id="SHG59052">
        <property type="protein sequence ID" value="SHG59052"/>
        <property type="gene ID" value="SAMN05444003_0053"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04458">
        <property type="entry name" value="CSP_CDS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012156">
        <property type="entry name" value="Cold_shock_CspA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011129">
        <property type="entry name" value="CSD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019844">
        <property type="entry name" value="CSD_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002059">
        <property type="entry name" value="CSP_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00313">
        <property type="entry name" value="CSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002599">
        <property type="entry name" value="Cold_shock_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00050">
        <property type="entry name" value="COLDSHOCK"/>
    </dbReference>
    <dbReference type="SMART" id="SM00357">
        <property type="entry name" value="CSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00352">
        <property type="entry name" value="CSD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51857">
        <property type="entry name" value="CSD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CSD" evidence="3">
        <location>
            <begin position="1"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU000408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG59052.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="69" mass="7347" checksum="5EFEDAF8EBFF9CD2" modified="2017-03-15" version="1">MPSGTVKWFNTTKGFGFIAPDEGGSDVFVHISAVEQAGMTGLADDQKIDYELVEGRDGRQMAGNLSKPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L2T8</accession>
    <name>A0A1M5L2T8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">SpoIIAA-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0038</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58733.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898367.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0038"/>
    <dbReference type="EnsemblBacteria" id="SHG58733">
        <property type="protein sequence ID" value="SHG58733"/>
        <property type="gene ID" value="SAMN05444003_0038"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10600">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021866">
        <property type="entry name" value="SpoIIAA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038396">
        <property type="entry name" value="SpoIIAA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036513">
        <property type="entry name" value="STAS_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11964">
        <property type="entry name" value="SpoIIAA-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52091">
        <property type="entry name" value="SSF52091"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG58733.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="241" mass="26550" checksum="5758955C688C7FF2" modified="2017-03-15" version="1">MIDVSTKMDGALIVATLSGEVSGDDYTKALLPVVEKGIETHDMVKMLIVAGDEFEDFDVDAAWEDIKMGVSHWRGFERIAVATDKTWMRRGIRVASPVFPCPMNVFTMAEQDDALRWLQESLGSIHVTDLGDATMRVNLLGEVDASAYENASANLDAKIAESESFKLLLDVTEFTGWQGVSAMGAHLSLVRQHAPIAEKVAIIGNKSWQRFSEKIGSAFLSAEVKYFDEAEEDAAKVWLSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L724</accession>
    <name>A0A1M5L724_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">O-acetylhomoserine sulfhydrylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0112</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 4">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the trans-sulfuration enzymes family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60213.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898466.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0112"/>
    <dbReference type="EnsemblBacteria" id="SHG60213">
        <property type="protein sequence ID" value="SHG60213"/>
        <property type="gene ID" value="SAMN05444003_0112"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016765">
        <property type="term" value="F:transferase activity, transferring alkyl or aryl (other than methyl) groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019346">
        <property type="term" value="P:transsulfuration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00614">
        <property type="entry name" value="CGS_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000277">
        <property type="entry name" value="Cys/Met-Metab_PyrdxlP-dep_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006235">
        <property type="entry name" value="OAc-hSer/O-AcSer_sulfhydrylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01053">
        <property type="entry name" value="Cys_Met_Meta_PP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001434">
        <property type="entry name" value="CGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01326">
        <property type="entry name" value="OAH_OAS_sulfhy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="3">
        <location>
            <position position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR001434-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU362118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG60213.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="430" mass="45947" checksum="3F4E5A6C94D4AD6E" modified="2017-03-15" version="1">MTNETSYGFDTLQIHAGARPDPATGARQVPIYQSTAYVFRDAEHAAALFNLQEVGYIYSRLTNPTVAALQERVATLEGGAGAVCCSSGHAAQIMALFPLMGPGLNIVASSRLYGGTMTQFSQTIKRFGWECTFVDFDDLKAVKAAIDENTRAVFCEAIANPGGHITDLDAISAIADDAGIPLIVDNTSATPYLCRPIEHGATLVVHSTTKYLTGNGTVTGGCVVDSGKFDWAANDKFPSLSQPEPAYHGLKFAETFGPLAFTFHGIAIGLRDLGMTMNPQAAHYSLMGIETLSLRMERHVENAKKVAAWLEQDDRIDYVTYAGLESSPYFGLVEKICPRGAGALFTVAVKGGYEACIKLVDSLEIFSHVANLGDTRSLIIHSASTTHRQLTTEQQEAAGAGPNIVRLSIGTEDADDIIADLDQALSKATA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L9E3</accession>
    <name>A0A1M5L9E3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Cell wall polymerase</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Peptidoglycan polymerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_0174</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61618.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898541.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0174"/>
    <dbReference type="EnsemblBacteria" id="SHG61618">
        <property type="protein sequence ID" value="SHG61618"/>
        <property type="gene ID" value="SAMN05444003_0174"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008955">
        <property type="term" value="F:peptidoglycan glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013437">
        <property type="entry name" value="FtsW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001182">
        <property type="entry name" value="FtsW/RodA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30474">
        <property type="entry name" value="PTHR30474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01098">
        <property type="entry name" value="FTSW_RODA_SPOVE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02614">
        <property type="entry name" value="ftsW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="10" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="10" id="KW-0132">Cell division</keyword>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4" id="KW-0133">Cell shape</keyword>
    <keyword evidence="6 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="28"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="67"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="91"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="159"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="190"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="283"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="316"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="349"/>
            <end position="370"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00032370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00033270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG61618.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="389" mass="41678" checksum="7F69A7407790B797" modified="2017-03-15" version="1">MTEMVYGTVPVVSVDPIIPRWWRTVDKWTLTCVFVLFGIGLLLGLASSPPLASKNGLEPFHYVMRQGFFGGLALATMLVVSMMSPQLVRRLAVIGFVCAFVAVALLPIFGTDFGKGATRWYSLGFASLQPSEFLKPGFVVVTAWLLAASQDIGGPPGKTYSFVLTVMICAMLALQPDFGQACLVLFAWGVMYFVGGAPMLLLIGIAGLVVMAGSFAYSNSEHFARRIDGFLSPDVDPTTQLGYASTAIREGGLFGVGVGEGQVKWSLPDAHTDFIIAVAAEEYGLICVLAILALYTTIVVRSLMRLMKERDPFIRLAGTGLACAFGVQAMINMGVAVRLLPAKGMTLPFVSYGGSSLIAGGIAVGMLLAFTRTRPQGEMEDVLMRRIGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LCB8</accession>
    <name>A0A1M5LCB8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0216</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62658.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898606.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0216"/>
    <dbReference type="EnsemblBacteria" id="SHG62658">
        <property type="protein sequence ID" value="SHG62658"/>
        <property type="gene ID" value="SAMN05444003_0216"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015914">
        <property type="term" value="P:phospholipid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030970">
        <property type="entry name" value="ABC_MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04430">
        <property type="entry name" value="OM_asym_MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="2">
        <location>
            <begin position="37"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG62658.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="148" mass="15247" checksum="631B361AA8FC13B9" modified="2017-03-15" version="1">MRENGAEVAMGAIVLAAAAGFFFYVTQVAGVGGLGRTYDLTASFRSVEGISVGTDVRLAGVKIGSISGIDLNQETYRGDVKLAIERGIEIPNDSAAVVASEGILGGNFIEIIPGGSFDTFAEGEEILDTQGAVSLISLLLKFVTGEGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LDP8</accession>
    <name>A0A1M5LDP8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Iron(III) transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0238</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63234.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0238"/>
    <dbReference type="EnsemblBacteria" id="SHG63234">
        <property type="protein sequence ID" value="SHG63234"/>
        <property type="gene ID" value="SAMN05444003_0238"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="21"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="70"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="104"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="155"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="252"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="302"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="346"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="378"/>
            <end position="403"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="423"/>
            <end position="444"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="529"/>
            <end position="548"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="66"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="343"/>
            <end position="547"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG63234.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="552" mass="58755" checksum="3CCA97E6D0D09669" modified="2017-03-15" version="1">MRIFMPEQTTQLFTQVPKRGIDIWSVGAVVIALLVIAPVAAVVWFALTPTENIWPHLLNTVLPRYVRNTLVLMFSVALLTAAIGIGAAWLVTMYRFPGRRWIQWALLMPLAVPAYVGAYALVDFLEYAGPVQTWIRSTFGFQTSRDYWFPDIRSMGGAIVVLSAALYPYVYILARAALKEQSAASYEVAQALGVGSFGRFWRVGLPMARPAVAAGAAVVMMETVNDFGTVDYFAVQTLTTGIFSAWQQGGNLGGAAQIASCILVLIAVLVTMERLSRRRLKFAASSRHHRPVQPRALSGGRAWTATVLCFVPILIGFIFPVAVLLANATNASEWVAPGLLDALQRTLFVGLSAAALTVLGGLFMVYGARISRHSLPKLLIPFTALGYAAPGAVLALGILVPLATIDNALADTILAVTGTDPGLLLLGSAGVLIFAYFVRFFAIAMGSADAALGRVSPSLGMASRSLGKTAGGTLRAVHAPLMRATIGSAFLLVFVDCVKELPATIMLSFEPTLATRVHAKASLELLSEAAPAALIIVGVGLVAVTLLARSNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LF89</accession>
    <name>A0A1M5LF89_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Diguanylate cyclase (GGDEF) domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_0258</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63668.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0258"/>
    <dbReference type="EnsemblBacteria" id="SHG63668">
        <property type="protein sequence ID" value="SHG63668"/>
        <property type="gene ID" value="SAMN05444003_0258"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01948">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001633">
        <property type="entry name" value="EAL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035919">
        <property type="entry name" value="EAL_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029095">
        <property type="entry name" value="NarX-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00563">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13675">
        <property type="entry name" value="PilJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00052">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141868">
        <property type="entry name" value="SSF141868"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50883">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="25"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="195"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="7">
        <location>
            <begin position="281"/>
            <end position="416"/>
        </location>
    </feature>
    <feature type="domain" description="EAL" evidence="6">
        <location>
            <begin position="425"/>
            <end position="679"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG63668.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="687" mass="75725" checksum="5909C206EE6550FC" modified="2017-03-15" version="1">MDVTAGTIGRFWSLRWLTTNPSRLWKRYVVAIGLIVLLLIGSQVAHTMTLTETARDASVINLSGRQRMLSQRILYLATQLELSQDSPTAAMLTDAVGEFENAHNRLVGIAMESPQLSEFFAVGTPERLDARARDYVNTARAIIQSPLDPQVLHPLLEDLKAFGTFELLRDLNTAVQLFEEDANDRAERLSQLQEATLILAILTIIIEAVLIFWPAQISINRALDGLESRNRDIVKSNEALQELTQRLSFAAHHDSLTGVANRKKLKEELSERLAKIDHDKRSICVMHLDLDRFKEVNDTLGHIVGDSVLSRAAEIMAYTVHDDDIVARVGGDEFVIVMDMPRAAGVKRAMEIAETLIRRICEPMMLDDAMVTVGTSIGIAFSSEQEAEADLLIGNADIALYEAKRDGKGVARLFTRSMREGVEQRHNMIQDIHEGLEKGQFIPFFQPQVSFDTGELIGFEVLARWDHPKYGLLPPADFIPLAEEIGVIDQIDMQVAIAGLDGLNKIRARGLKVPKLSINVAARSLRLGTYRDDLHKALKERGLSPSDIVVEVLETTLIEGKDDPAYQMIGDLASDGFDIYIDDFGTGYASLASLAQLDLSGMKIDKSLVANPEDRRANQVIAAVSSLADGLGLTIVAEGVETPQTYSALKRMKCHVAQGYGIGVPMSQDDAIGWMADYGASPQQLAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LJX6</accession>
    <name>A0A1M5LJX6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Autoinducer 2-binding protein LsrB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_0335</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Part of the ABC transporter complex LsrABCD involved in autoinducer 2 (AI-2) import. Binds AI-2 and delivers it to the LsrC and LsrD permeases.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">The complex is composed of two ATP-binding proteins (LsrA), two transmembrane proteins (LsrC and LsrD) and a solute-binding protein (LsrB).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial solute-binding protein 2 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65315.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898779.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0335"/>
    <dbReference type="EnsemblBacteria" id="SHG65315">
        <property type="protein sequence ID" value="SHG65315"/>
        <property type="gene ID" value="SAMN05444003_0335"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015762">
        <property type="term" value="P:rhamnose transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030159">
        <property type="entry name" value="LsrB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013459">
        <property type="entry name" value="RhaS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025997">
        <property type="entry name" value="SBP_2_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46847:SF4">
        <property type="entry name" value="PTHR46847:SF4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13407">
        <property type="entry name" value="Peripla_BP_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02637">
        <property type="entry name" value="RhaS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0574">Periplasm</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013223122" description="Autoinducer 2-binding protein LsrB" evidence="7">
        <location>
            <begin position="26"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="domain" description="Peripla_BP_4" evidence="8">
        <location>
            <begin position="31"/>
            <end position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007639"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011262"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00014452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00025060"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF13407"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG65315.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="332" mass="34277" checksum="8FD75A87B15E03B2" modified="2017-03-15" version="1">MSITRRLFGGSAIATAMLAGNAAYAQDDMRIALVVKALGIGFFEAAAEGAEEAAAELGNVEIIYTGPTDTTAEGQIEVINSLIAQGVDAIAISANDPDAVSPALQRAMQRGITVVSWDSGVNEEGRMMHLNPSSTPLIGNTIIKLAADHMPDGGQVAILSASATATNQNAWIEAAEEVLPNYPGIELVATVYGDDLSDKSYREAQGLMASYPDLKAIIAPTTVGILASCQAVSDADKIGEINVTGLGLPSEMAGCVVSGATESFAIWNPIDLGYSATMIAHALATGAATAEPGAEIPTGRMGSVTLDDTNTAAMSDPFTYDASNIDQFKDIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LM60</accession>
    <name>A0A1M5LM60_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Salicylate hydroxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0368</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66046.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0368"/>
    <dbReference type="EnsemblBacteria" id="SHG66046">
        <property type="protein sequence ID" value="SHG66046"/>
        <property type="gene ID" value="SAMN05444003_0368"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002938">
        <property type="entry name" value="FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01494">
        <property type="entry name" value="FAD_binding_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="domain" description="FAD_binding_3" evidence="2">
        <location>
            <begin position="23"/>
            <end position="351"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG66046.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="398" mass="43056" checksum="CCE2385DA3AFD1B0" modified="2017-03-15" version="1">MKRRNATNAARRFIATTDLDGFTVGIVGGGIGGLTAALAFADRGASVSVLEQAKEFTEVGAGIQITPNAARVFQALGLLEFLPRIGIEAEAVVPVDGLTGKAITGFDLSAQSPRYHFVHRAKLLEMLVNACIGRGVQLHTNSRVASATDEGVMSFEDVDATHAQFDLVVFADGIHSIGRALINGPTEPFFAGQVAWRAIVSGSMTNAAQVIMGPGRHIVLYPLGPNQINLVAVQERSNWAKEGWNHADDPANLQDAFSDFAPDIRALLEKVETVNLWGLFRHEVAQSWVKGRMTMLGDAAHPTLPFLAQGANLAIEDAYVLARSVERDGRVQGLGTYQNMRRPRVIRAIDAANANAKNYHLSGPQRWASHMALRGLGVVAPNAFLRRLSWLYDFDVTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LQK5</accession>
    <name>A0A1M5LQK5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Cysteine--tRNA ligase</fullName>
            <ecNumber evidence="11">6.1.1.16</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">Cysteinyl-tRNA synthetase</fullName>
            <shortName evidence="11">CysRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">cysS</name>
        <name evidence="13" type="ORF">SAMN05444003_0418</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>ATP + L-cysteine + tRNA(Cys) = AMP + diphosphate + L-cysteinyl-tRNA(Cys)</text>
            <dbReference type="Rhea" id="RHEA:17773"/>
            <dbReference type="Rhea" id="RHEA-COMP:9661"/>
            <dbReference type="Rhea" id="RHEA-COMP:9679"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:35235"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78517"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.16"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="11">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3 11">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the class-I aminoacyl-tRNA synthetase family.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.16" evidence="11"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67180.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898905.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0418"/>
    <dbReference type="EnsemblBacteria" id="SHG67180">
        <property type="protein sequence ID" value="SHG67180"/>
        <property type="gene ID" value="SAMN05444003_0418"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004817">
        <property type="term" value="F:cysteine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006423">
        <property type="term" value="P:cysteinyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00672">
        <property type="entry name" value="CysRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00041">
        <property type="entry name" value="Cys_tRNA_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015803">
        <property type="entry name" value="Cys-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024909">
        <property type="entry name" value="Cys-tRNA/MSH_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032678">
        <property type="entry name" value="tRNA-synt_1_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009080">
        <property type="entry name" value="tRNAsynth_Ia_anticodon-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10890">
        <property type="entry name" value="PTHR10890"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01406">
        <property type="entry name" value="tRNA-synt_1e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00983">
        <property type="entry name" value="TRNASYNTHCYS"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47323">
        <property type="entry name" value="SSF47323"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00435">
        <property type="entry name" value="cysS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 11 13" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="8 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 11" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9 11" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 11" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="tRNA-synt_1e" evidence="12">
        <location>
            <begin position="17"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region" evidence="11">
        <location>
            <begin position="32"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="11">
        <location>
            <begin position="270"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="30"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="212"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="237"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="241"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="273"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00041"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF01406"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHG67180.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="453" mass="50617" checksum="13916A80CB79EE22" modified="2017-03-15" version="1">MTDIKLHNTKTRRKEVFEPIDPSNVRMYLCGPTVYDRAHLGNARNVMMFDVLFRLFRHFYGEDHVTYVRNFTDVDDKINAKAAETGRPIRDITDETIAWYHADMDALGALRPTHEPRATEYIDQMIEMIEGLIKKGHAYEAQGHVLFAVATDPEYGSLSGRSVEDMIAGARVEVAPYKRDPMDFVLWKPSDAETPGWDSPWGRGRPGWHIECSAMSKELLGETFDIHGGGNDLQFPHHENEIAQSRCAHPDSDFAKIWLHNDMLQVEGKKMSKSLGNFFTVRDLLEQDVHGEVIRFVFLSTHYGKPMDWTEKKREEAEKTLRKWYALADFEADHAVPTEVLEAISNDLNTAGALAEVHKMASSGDAASLGAALTLLGLGYVPDWAKTADVDLSVYEGRLSELRASAMESKDFAPVDAMKSALIEAGVEVQMSKAGITLVPSAGFDPSKLEGLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LSV3</accession>
    <name>A0A1M5LSV3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Phosphoribosylformylglycinamidine synthase subunit PurL</fullName>
            <shortName evidence="5">FGAM synthase</shortName>
            <ecNumber evidence="5">6.3.5.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Formylglycinamide ribonucleotide amidotransferase subunit II</fullName>
            <shortName evidence="5">FGAR amidotransferase II</shortName>
            <shortName evidence="5">FGAR-AT II</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">Glutamine amidotransferase PurL</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">Phosphoribosylformylglycinamidine synthase subunit II</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">purL</name>
        <name evidence="9" type="ORF">SAMN05444003_0463</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>ATP + H2O + L-glutamine + N(2)-formyl-N(1)-(5-phospho-beta-D-ribosyl)glycinamide = 2-formamido-N(1)-(5-O-phospho-beta-D-ribosyl)acetamidine + ADP + H(+) + L-glutamate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:17129"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:147286"/>
            <dbReference type="ChEBI" id="CHEBI:147287"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.5.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="5">Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole from N(2)-formyl-N(1)-(5-phospho-D-ribosyl)glycinamide: step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Monomer. Part of the FGAM synthase complex composed of 1 PurL, 1 PurQ and 2 PurS subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the FGAMS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.3" evidence="5"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68204.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898976.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0463"/>
    <dbReference type="EnsemblBacteria" id="SHG68204">
        <property type="protein sequence ID" value="SHG68204"/>
        <property type="gene ID" value="SAMN05444003_0463"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00128"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004642">
        <property type="term" value="F:phosphoribosylformylglycinamidine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.650.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00420">
        <property type="entry name" value="PurL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010074">
        <property type="entry name" value="PRibForGlyAmidine_synth_PurL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041609">
        <property type="entry name" value="PurL_linker"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010918">
        <property type="entry name" value="PurM-like_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036676">
        <property type="entry name" value="PurM-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016188">
        <property type="entry name" value="PurM-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036921">
        <property type="entry name" value="PurM-like_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43555">
        <property type="entry name" value="PTHR43555"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00586">
        <property type="entry name" value="AIRS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02769">
        <property type="entry name" value="AIRS_C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18072">
        <property type="entry name" value="FGAR-AT_linker"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001587">
        <property type="entry name" value="FGAM_synthase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55326">
        <property type="entry name" value="SSF55326"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56042">
        <property type="entry name" value="SSF56042"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01736">
        <property type="entry name" value="FGAM_synth_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3 5" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FGAR-AT_linker" evidence="8">
        <location>
            <begin position="15"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="domain" description="AIRS" evidence="6">
        <location>
            <begin position="85"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="domain" description="AIRS_C" evidence="7">
        <location>
            <begin position="201"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="domain" description="AIRS" evidence="6">
        <location>
            <begin position="446"/>
            <end position="550"/>
        </location>
    </feature>
    <feature type="domain" description="AIRS_C" evidence="7">
        <location>
            <begin position="563"/>
            <end position="693"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="92"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="310"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="active site" evidence="5">
        <location>
            <position position="47"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="5">
        <location>
            <position position="93"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="50"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="89"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="91"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="114"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="115"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="238"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="266"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="488"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="525"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="526"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="528"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00420"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00586"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF18072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG68204.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="719" mass="76215" checksum="8F140E27DF25B0C4" modified="2017-03-15" version="1">MSEPELTEDVIAAHGFSPDEWQEVLNILGRTPNFTEMGIFSAMWNEHCSYKSSKKWLRTLPTEGPQVICGPGENAGVVDIGDGQAVIFKMESHNHPSYIEPYQGAATGVGGILRDVFTMGARPIAAMNALSFGEPDHPKTRQLVNGVVAGVGGYGNCFGVPTVGGEVRFDPAYNGNCLVNAFAAGLADADKIFYSAASGVGMPVVYLGAKTGRDGVGGATMASAEFDDTIEEKRPTVQVGDPFTEKRLMEATLELMATGAVISIQDMGAAGLTCSAVEMGDKGGLGVRLDLENVPQREENMTAYEMMLSESQERMLMVLKPELEAEARAVFEKWDLDFAIVGETLPEDRFLIMHNGQVKADLPLSKLSSTAPEYDRPWVETPNAEPLGEITGVNPIDGLKALISSPNYAGKQWVYEQYDQQVMGDTAVTPGTGGGVIRVHGTEKSLAFTSDVTPRYVKANPVEGGKQAVAEAYRNLTAVGATPLATTDNMNFGNPEKPEIMGQFVGAIKGIGEAVSALDMPIVSGNVSLYNETDGQAILPTPTIGAVGLIPTPDAMISDSIRDGHVLLVVGKTDGHLGQSALLAEVYVRAEGDAPAVDLAAEKRNGDFIRANNGMIRACTDLSDGGLALAAFELAEAAGCGITLDMDDTPTLFGEDQARYLVACNFDQAEDLMLCAGRDGVPIAMVGRVGGDQVTFGSHSADLTELSELYRTSFEQAVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LUK6</accession>
    <name>A0A1M5LUK6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Sporulation related domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0486</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68738.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899009.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0486"/>
    <dbReference type="EnsemblBacteria" id="SHG68738">
        <property type="protein sequence ID" value="SHG68738"/>
        <property type="gene ID" value="SAMN05444003_0486"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042834">
        <property type="term" value="F:peptidoglycan binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1070">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007730">
        <property type="entry name" value="SPOR-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036680">
        <property type="entry name" value="SPOR-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05036">
        <property type="entry name" value="SPOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51724">
        <property type="entry name" value="SPOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="18"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="domain" description="SPOR" evidence="2">
        <location>
            <begin position="245"/>
            <end position="330"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG68738.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="330" mass="34180" checksum="8862E38F45AEF974" modified="2017-03-15" version="1">MAVYDDGAQPFSQRATSLVNYAGAACSLALMVGIGFWGYELIKRDVSGIPVVRAVEGDMRVAPDNPGGEVAAHTGLAVNAVAAEGEAAGFEDTLLLAPRTQQLAEEDLAVQPTAEAGEVAPVEDDTAAVEVSLTETLPEEQAPMSADEILALADRLATGVEPIDAPVEPEVAAAEEAVPAEPEVEVIAASVPGVSTSLRPFVRPVSLSVPVSASAQVDEAVAAALASASANTGPNNSEVSVLATELPVGTKLVQLGAFPTPQDAAEVWANLQGRFGDYLVSKERVIQVAERGSSTFYRLRAMGFDDLTDARRFCAALEAGNAECIPVVIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LXE1</accession>
    <name>A0A1M5LXE1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0525</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69590.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899053.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0525"/>
    <dbReference type="EnsemblBacteria" id="SHG69590">
        <property type="protein sequence ID" value="SHG69590"/>
        <property type="gene ID" value="SAMN05444003_0525"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010865">
        <property type="entry name" value="DUF1499"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07386">
        <property type="entry name" value="DUF1499"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG69590.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="153" mass="16932" checksum="F3398F9B5E3BFBB2" modified="2017-03-15" version="1">MLKYIIALGVFAIAASLVYIRLGPVDTAQFHKAPSPQPVGDYERIDGIMVVREITDTPINVMGELNRIALDTPRTRRIAGDLGTDLVTYETRSLLIGFPDYATVSFVEPDTIGNERRLMLIDSRLRFGNSDLGVNKRKVMGWLEALGPLTVTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LYD3</accession>
    <name>A0A1M5LYD3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF4167 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0528</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69649.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0528"/>
    <dbReference type="EnsemblBacteria" id="SHG69649">
        <property type="protein sequence ID" value="SHG69649"/>
        <property type="gene ID" value="SAMN05444003_0528"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025430">
        <property type="entry name" value="DUF4167"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13763">
        <property type="entry name" value="DUF4167"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4167" evidence="2">
        <location>
            <begin position="26"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="20"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="101"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="101"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="163"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG69649.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="196" mass="22234" checksum="C53FA3C0AE73D512" modified="2017-03-15" version="1">MSRSTKRELCANWARRKYLMRSSKSRSRNKNRNNRPSGGNIINRVFDSSGPDGKVRGTPQQIIDKYNQLHRDAQLSGDRVNAENFAQHAEHYLRMLAEAQREVEAKRQEQEAQNRERQAERDRERAERLKAQEEAAADPSTLDQPDVADAGADNGLVETPEAQPKPRKPRQRKPKPQPEATEQPSSDDTAAPEAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LZB1</accession>
    <name>A0A1M5LZB1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Yip1 domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0555</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70260.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899099.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0555"/>
    <dbReference type="EnsemblBacteria" id="SHG70260">
        <property type="protein sequence ID" value="SHG70260"/>
        <property type="gene ID" value="SAMN05444003_0555"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006977">
        <property type="entry name" value="Yip1_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04893">
        <property type="entry name" value="Yip1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="31"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="76"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="113"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="141"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="domain" description="Yip1" evidence="6">
        <location>
            <begin position="11"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG70260.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="167" mass="18641" checksum="563FEFD460EC537F" modified="2017-03-15" version="1">MAVTTDIVRTWRRPRTVVRELLSHGKREDRAIAYVMAACFLIFIAQWPRLSRRAAGFELEAGQEAPELTQLMAYEFMSWIMIWPLMLYLLAAGLHLLFRLFGGKGTFYSARIALFWSLLATTPVLLLYGLMAGFLGPGPGANLVGGVWLVSFAIIGLQAFREAEAGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M124</accession>
    <name>A0A1M5M124_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">Single-stranded DNA-binding protein</fullName>
            <shortName evidence="3">SSB</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0572</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homotetramer.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70599.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900382.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0572"/>
    <dbReference type="EnsemblBacteria" id="SHG70599">
        <property type="protein sequence ID" value="SHG70599"/>
        <property type="gene ID" value="SAMN05444003_0572"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04496">
        <property type="entry name" value="SSB_OBF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00984">
        <property type="entry name" value="SSB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000424">
        <property type="entry name" value="Primosome_PriB/ssb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011344">
        <property type="entry name" value="ssDNA-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10302">
        <property type="entry name" value="PTHR10302"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00436">
        <property type="entry name" value="SSB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00621">
        <property type="entry name" value="ssb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50935">
        <property type="entry name" value="SSB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0227">DNA damage</keyword>
    <keyword evidence="2 3" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="3" id="KW-0234">DNA repair</keyword>
    <keyword evidence="3" id="KW-0235">DNA replication</keyword>
    <keyword evidence="1 3 4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="117"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Important for interaction with partner proteins" evidence="3">
        <location>
            <begin position="160"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00252"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000524"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG70599.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="165" mass="17551" checksum="2A26E700EB888948" modified="2017-03-15" version="1">MAGSVNKVILIGNLGADPEVRTFQNGGKVCNLRIATSENWKDRNTGERRERTEWHSVAIFSEGLVRVAEQYLRKGSKVYIEGKLQTRKWQDQSGQDRYSTEVVLQGLNGTLTMLDSRGEGGGSYGGSSGGYGSGGGYDSGGGYESGPSGNSGGGGGRDMDDEIPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M4A1</accession>
    <name>A0A1M5M4A1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cystathionine gamma-synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0632</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 3">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the trans-sulfuration enzymes family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899197.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0632"/>
    <dbReference type="EnsemblBacteria" id="SHG72105">
        <property type="protein sequence ID" value="SHG72105"/>
        <property type="gene ID" value="SAMN05444003_0632"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019346">
        <property type="term" value="P:transsulfuration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00614">
        <property type="entry name" value="CGS_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000277">
        <property type="entry name" value="Cys/Met-Metab_PyrdxlP-dep_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11808">
        <property type="entry name" value="PTHR11808"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01053">
        <property type="entry name" value="Cys_Met_Meta_PP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001434">
        <property type="entry name" value="CGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="2">
        <location>
            <position position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR001434-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU362118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG72105.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="392" mass="41789" checksum="66650EDE8DE95B57" modified="2017-03-15" version="1">MSKSGKSIVRRTGWPTSVSHPVVTPLQPSVVYSSPDPDTLDQQYEQKSGYTYAREGHPNAVVLAQKIDMLEGVEGGIITGSGMSAIGAVFLACLKAGDHVLGGNQLYGRSLRLMSQDLPKFGVETSFADPTDVSAMKAAVQPNTKMILVEVVSNPTIRVADMVGIAALAKEIGALLVVDNTFTTPRGYQPFEHGADIVVHSVTKLLAGHSDVTLGYAVAKDAELQTAIYDANASWGLTASPFDCWLAERGLHSFELRYDRAEENATKLATALKDLDGVKRVLHPSLPDHPDHNRVQQVLGNRPGNMLSFELTGGRETANAMTKAAPNIAFAPTLGDIGTTLSHPPSSSHRGLTTEGRAELGISEGFFRVSVGVEDIDLLIEEFSTAIKAATA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M5I9</accession>
    <name>A0A1M5M5I9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">LuxR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0649</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72521.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899229.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0649"/>
    <dbReference type="EnsemblBacteria" id="SHG72521">
        <property type="protein sequence ID" value="SHG72521"/>
        <property type="gene ID" value="SAMN05444003_0649"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005143">
        <property type="entry name" value="TF_LuxR_autoind-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036693">
        <property type="entry name" value="TF_LuxR_autoind-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03472">
        <property type="entry name" value="Autoind_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75516">
        <property type="entry name" value="SSF75516"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH luxR-type" evidence="2">
        <location>
            <begin position="179"/>
            <end position="244"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG72521.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="251" mass="28436" checksum="639876CAE7431CA2" modified="2017-03-15" version="1">MSDLIDYLNAATNARSDQELWNLHTERMKRYGFDRLLYGYTRYRTVSSLGDLDDMVLLSNHTREYMDTFMSGGHYQQGPMVRWALENDGACSWRWMQDLAQADMLTDGEKMVIAFNQSMDVTAGYTVSFRSVSHRTKGAIALTAKPGMTQDEVEEIWAEHGDELTAVNNVMHLKLHTLPYSGARALTKRQREVLQWVGDGKTTQDIAVLLNLTAATVEKHLRLAREALDVETTAQAVLKAAFYNQMFVAEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M7E3</accession>
    <name>A0A1M5M7E3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CTP:molybdopterin cytidylyltransferase MocA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0675</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73145.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899277.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0675"/>
    <dbReference type="EnsemblBacteria" id="SHG73145">
        <property type="protein sequence ID" value="SHG73145"/>
        <property type="gene ID" value="SAMN05444003_0675"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025877">
        <property type="entry name" value="MobA-like_NTP_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12804">
        <property type="entry name" value="NTP_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="NTP_transf_3" evidence="1">
        <location>
            <begin position="5"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12804"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG73145.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="201" mass="22340" checksum="44F2C71A4CCD34B1" modified="2017-03-15" version="1">MTPILILAAGTSSRMSGKDKLLQDIDGTPLLLRTARRAIAAGKPVFVAIPGPWHPRYQLLRSEPVACYDIPDAKEGVGGTLRGSIKRLPPCSAFMILLADMPDIETADMLRLFEEKQRHPAAKIVRATTETGLPGHPILFDSSLRPDFEKISGDQGAVEIVKRFQDQTTLVPLDGDRARLDLDTPEDWRKFEKRRTKELSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M8Z8</accession>
    <name>A0A1M5M8Z8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0703</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73742.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899326.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0703"/>
    <dbReference type="EnsemblBacteria" id="SHG73742">
        <property type="protein sequence ID" value="SHG73742"/>
        <property type="gene ID" value="SAMN05444003_0703"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG73742.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="287" mass="33060" checksum="5032089A0995011B" modified="2017-03-15" version="1">MIYSSASDWRNAPQKRVLVFAMSGLGKTHISKMLRDNGDWFHYSIDYRIGTRYMGERIADNAKREAMKVPFLRDLLKSNSIYIGSNISFDDLKPMSSYLGKPGDPDKGGLLWDEYTRRQDQFQASEIAALHDTGHFIDRANDLYGYPHFICDTGGSICEWVDVNNPDDPIMADLSEKTLMIWIEGTEEHTEELIRRFDKEPKPMSYDPTFLLECWTRYLDEHGVAPEKVDPDHFIRWTYASALAHRQPRYKAMADRWGLTITAAKITTVRSADDFIDVVAEVLEMRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MAQ4</accession>
    <name>A0A1M5MAQ4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Glutamate 5-kinase</fullName>
            <ecNumber evidence="8">2.7.2.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Gamma-glutamyl kinase</fullName>
            <shortName evidence="8">GK</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">proB</name>
        <name evidence="10" type="ORF">SAMN05444003_0729</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>ATP + L-glutamate = ADP + L-glutamyl 5-phosphate</text>
            <dbReference type="Rhea" id="RHEA:14877"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58274"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.2.11"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="8">Amino-acid biosynthesis; L-proline biosynthesis; L-glutamate 5-semialdehyde from L-glutamate: step 1/2.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the glutamate 5-kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.7.2.11" evidence="8"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74336.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899377.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0729"/>
    <dbReference type="EnsemblBacteria" id="SHG74336">
        <property type="protein sequence ID" value="SHG74336"/>
        <property type="gene ID" value="SAMN05444003_0729"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00098">
        <property type="reaction ID" value="UER00359"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004349">
        <property type="term" value="F:glutamate 5-kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055129">
        <property type="term" value="P:L-proline biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04242">
        <property type="entry name" value="AAK_G5K_ProB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1160.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00456">
        <property type="entry name" value="ProB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036393">
        <property type="entry name" value="AceGlu_kinase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001048">
        <property type="entry name" value="Asp/Glu/Uridylate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041739">
        <property type="entry name" value="G5K_ProB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001057">
        <property type="entry name" value="Glu/AcGlu_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011529">
        <property type="entry name" value="Glu_5kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005715">
        <property type="entry name" value="Glu_5kinase/COase_Synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019797">
        <property type="entry name" value="Glutamate_5-kinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002478">
        <property type="entry name" value="PUA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015947">
        <property type="entry name" value="PUA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036974">
        <property type="entry name" value="PUA_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00696">
        <property type="entry name" value="AA_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01472">
        <property type="entry name" value="PUA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000729">
        <property type="entry name" value="GK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00474">
        <property type="entry name" value="GLU5KINASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00359">
        <property type="entry name" value="PUA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53633">
        <property type="entry name" value="SSF53633"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88697">
        <property type="entry name" value="SSF88697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01027">
        <property type="entry name" value="proB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00902">
        <property type="entry name" value="GLUTAMATE_5_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 8 10" id="KW-0418">Kinase</keyword>
    <keyword evidence="5 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3 8" id="KW-0641">Proline biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PUA" evidence="9">
        <location>
            <begin position="279"/>
            <end position="361"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="13"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="54"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="141"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="153"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="173"/>
            <end position="174"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022650"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM00359"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG74336.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="374" mass="39293" checksum="F34517405E0B153B" modified="2017-03-15" version="1">MATLSDAKRLVVKIGSALLVDRETGNLREDWLKSLAEDIAAIRVRGTDVIVVSSGSIALGRGVLGLPSDELSLEQSQAAAAVGQIRLARAYEEALEPFGIKTAQILVTLEDSANRRRYLNSRATMETLLGLGVTPIVNENDTIATDEIRYGDNDRLAAQVAVTVGADQLVLLSDVDGLYTANPIEDAEATHIPTVEAIDASIMAMAGDAGSGLSKGGMKTKILAARVATDAGCAMAITLGSPLNPLSKLEEAARATWFSAALSPQAARKRWISAMKPQGTVTLDSGAVKALLGGKSLLPAGVTYTTDGYGRGDPVEIVSSNGDILGVGLSRYTAEEVALIKGHRSNEIEAILGYEGRAALIHRDDMALNDRTVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MDR9</accession>
    <name>A0A1M5MDR9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">4 TMS phage holin, superfamily IV</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0777</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75386.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0777"/>
    <dbReference type="EnsemblBacteria" id="SHG75386">
        <property type="protein sequence ID" value="SHG75386"/>
        <property type="gene ID" value="SAMN05444003_0777"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007165">
        <property type="entry name" value="Phage_holin_4_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04020">
        <property type="entry name" value="Phage_holin_4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="31"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="67"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="97"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="128"/>
            <end position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG75386.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="178" mass="18686" checksum="4756E804FF14D4EC" modified="2017-03-15" version="1">MIKFLISVASYLIANAAGLFAATLLLTGFTIDFTAFIFAVLIFSVFQTIAGPIITKMSLQHIPQLRGGVAIVVIMAGLVITDLLMPGMNVGGISNLLAATLLVWFGSLIAAILIPIYIFKEVKESREERQEKMESDVQSAVDAAERSAAAAEAAAKSAEAAAHPTPDPTPAPTPKSGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MFJ6</accession>
    <name>A0A1M5MFJ6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Beta-barrel assembly machine subunit BamE</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0808</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76100.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0808"/>
    <dbReference type="EnsemblBacteria" id="SHG76100">
        <property type="protein sequence ID" value="SHG76100"/>
        <property type="gene ID" value="SAMN05444003_0808"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019867">
        <property type="term" value="C:outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1450.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037873">
        <property type="entry name" value="BamE-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007450">
        <property type="entry name" value="Lipoprotein_SmpA/OmlA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04355">
        <property type="entry name" value="SmpA_OmlA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="domain" description="SmpA_OmlA" evidence="2">
        <location>
            <begin position="33"/>
            <end position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04355"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG76100.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="156" mass="17451" checksum="67BB3AB278805F53" modified="2017-03-15" version="1">MNKLRSMRMLQRTMLVATLALAIGCTPLIRNHGYIPPDEDLTRIVVGQDTRESVRALVGPPSADGVQRGGDYYYVQSTFRTLGFFAPEEIERQVLAIRFNESGVVTNIERYGLEEGQVVVLFRRVTDTGVQDTTFIRQLLQSIGRIDPGQFLGSDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MHP7</accession>
    <name>A0A1M5MHP7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator, DeoR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0838</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76850.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899533.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0838"/>
    <dbReference type="EnsemblBacteria" id="SHG76850">
        <property type="protein sequence ID" value="SHG76850"/>
        <property type="gene ID" value="SAMN05444003_0838"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014036">
        <property type="entry name" value="DeoR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001034">
        <property type="entry name" value="DeoR_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037171">
        <property type="entry name" value="NagB/RpiA_transferase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00455">
        <property type="entry name" value="DeoRC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08220">
        <property type="entry name" value="HTH_DeoR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00037">
        <property type="entry name" value="HTHLACR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00420">
        <property type="entry name" value="HTH_DEOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100950">
        <property type="entry name" value="SSF100950"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51000">
        <property type="entry name" value="HTH_DEOR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH deoR-type" evidence="3">
        <location>
            <begin position="3"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51000"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG76850.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="252" mass="27245" checksum="A35183EC40089CC1" modified="2017-03-15" version="1">MNEAERHTAILEEARKTKIVNATRLSMSLGVAVQTIRRDLRKLSASGQLERVHGGAALPSGVANIGYDARRSLNRDLKRRIALKTTTLIPDNASLFLNIGTTTEAVASRLSNHQNLMVVTNNLNVANILAPHKSCEVVVAGGRLRRADGGLTGDLAALAIQRFKVDIAVIGASAIDPEGDLLDFDPEEVRVSQQIITAARQTIVVGDSGKFTRKAPVRIASLSEVEHFVTDGMPSERLAMRCQDWGTQLHLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MIU1</accession>
    <name>A0A1M5MIU1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0860</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77384.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899565.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG77384">
        <property type="protein sequence ID" value="SHG77384"/>
        <property type="gene ID" value="SAMN05444003_0860"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="55"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="95"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="170"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="205"/>
            <end position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG77384.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="230" mass="25274" checksum="E61565ADECEBA477" modified="2017-03-15" version="1">MPPAPTVDLQPTPLRKSLPRLAIRFGVIAGFTYFALLGFEWLTTQIMKLDGATQSGAMIGALALVLVGYALLLAIPFMPGVEVGIALLLMKGADIAPFVYAATLLGLFIAFSIGQNVPLKWLQSFFQDLRMLRVCRWLDRMQNSARDDRLERLTERFPSWLSRIAVDYRYVSIGILINLPGSFAIGGGGGIMMAAGLTRLFQTSWVILTLMIAVLPVPLAVWITGVEFLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MJT6</accession>
    <name>A0A1M5MJT6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Glucose-6-phosphate isomerase</fullName>
            <shortName evidence="7">GPI</shortName>
            <ecNumber evidence="7">5.3.1.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Phosphoglucose isomerase</fullName>
            <shortName evidence="7">PGI</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Phosphohexose isomerase</fullName>
            <shortName evidence="7">PHI</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">pgi</name>
        <name evidence="9" type="ORF">SAMN05444003_0866</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the reversible isomerization of glucose-6-phosphate to fructose-6-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6 7 8">
            <text>alpha-D-glucose 6-phosphate = beta-D-fructose 6-phosphate</text>
            <dbReference type="Rhea" id="RHEA:11816"/>
            <dbReference type="ChEBI" id="CHEBI:57634"/>
            <dbReference type="ChEBI" id="CHEBI:58225"/>
            <dbReference type="EC" id="5.3.1.9"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Carbohydrate biosynthesis; gluconeogenesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 7 8">Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-glucose: step 2/4.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7 8">Belongs to the GPI family.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.9" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77506.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899571.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0866"/>
    <dbReference type="EnsemblBacteria" id="SHG77506">
        <property type="protein sequence ID" value="SHG77506"/>
        <property type="gene ID" value="SAMN05444003_0866"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00181"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00138"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004347">
        <property type="term" value="F:glucose-6-phosphate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006094">
        <property type="term" value="P:gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd05015">
        <property type="entry name" value="SIS_PGI_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd05016">
        <property type="entry name" value="SIS_PGI_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00473">
        <property type="entry name" value="G6P_isomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001672">
        <property type="entry name" value="G6P_Isomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023096">
        <property type="entry name" value="G6P_Isomerase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018189">
        <property type="entry name" value="Phosphoglucose_isomerase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035476">
        <property type="entry name" value="SIS_PGI_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035482">
        <property type="entry name" value="SIS_PGI_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11469">
        <property type="entry name" value="PTHR11469"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00342">
        <property type="entry name" value="PGI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00662">
        <property type="entry name" value="G6PISOMERASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SSF53697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00765">
        <property type="entry name" value="P_GLUCOSE_ISOMERASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00174">
        <property type="entry name" value="P_GLUCOSE_ISOMERASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51463">
        <property type="entry name" value="P_GLUCOSE_ISOMERASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 7 8" id="KW-0312">Gluconeogenesis</keyword>
    <keyword evidence="4 7 8" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="5 7 8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton donor" evidence="7">
        <location>
            <position position="338"/>
        </location>
    </feature>
    <feature type="active site" evidence="7">
        <location>
            <position position="369"/>
        </location>
    </feature>
    <feature type="active site" evidence="7">
        <location>
            <position position="497"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006604"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00029321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000612"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG77506.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="532" mass="57556" checksum="D33A124C4CBB0148" modified="2017-03-15" version="1">MWDQLKAHHEHVKNRRFETLVDADRAEAFSAETSDMRLDYSKTNIDADGLGLLIDLLENAGVGDKRAQMFSGGKINETEGRAVLHTALRNLDGGPVFVDGEDVMPGVLATLERMEKFAATVRDGSFKGQGGKITDVVNIGIGGSDLGPAMGVLALAPYHDGPRCHFVSNVDPADISQVLQGCNPETTLVIVASKTFTTIETMTNARTAMAWMGESVAEPGAQFAALSTAEDKTAAFGIAAERVFGFEDWVGGRYSMWGPIGLSLMIAIGPDAFRAFLRGGQAMDVHFRSAIWRDNMPALLALVGIWHNQICGHATRAVLPYDNNLSRLAAYLQQLEMESNGKGVSMDGADLDGPSGPVVWGEPGTNGQHAFYQLIHQGKRVIPCEFLVAARGHDDALHHQHQLLVANCLAQSEALMKGRDLDEARSKVAGKFEGAELERQARHREFTGNRPSVTITYPQLTPFVLGQIIALYEHRVFVEGVVLGINSYDQWGVELGKELATALQPIVEGAQSVEGKDGSTAALVDFLKRHGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MKK0</accession>
    <name>A0A1M5MKK0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">VPLPA-CTERM protein sorting domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0878</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899586.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG77781">
        <property type="protein sequence ID" value="SHG77781"/>
        <property type="gene ID" value="SAMN05444003_0878"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012386761" evidence="3">
        <location>
            <begin position="28"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="308"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="129"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG77781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="335" mass="37075" checksum="B0B4EE8F3A1984C8" modified="2017-03-15" version="1">MKGKRFTLIISALIGFLAMVASGPLSAATFALTEDIQLENVSAARSIETRNIYQINFTARTPRFLSPLEVLENAKDEPEKLLEIKHWLATERKVIFRLLQRNGRFTDVDDPRIRWYRTKTSETEIGFRPEETSTSEVSFPTGNALSWPDLEDGEEKTSNLTTFVVREQDSTCGFPNDFYNVALSSSEQGGLAWLRTATFQPAAPSQPRTPKISGVTWLNMSMPHVVGYAMGGEDHSSVPESQRLSFGATTNSEDSTISGFKQPRDIFRCRVYASDETASFNPPDFTSPFIRAAFPTFRTSSAPNSPEAVPLPAGAALLLSALLGLFVFRKTPRSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MLG6</accession>
    <name>A0A1M5MLG6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Acetyltransferase component of pyruvate dehydrogenase complex</fullName>
            <ecNumber evidence="7">2.3.1.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_0894</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>(R)-N(6)-dihydrolipoyl-L-lysyl-[protein] + acetyl-CoA = (R)-N(6)-(S(8)-acetyldihydrolipoyl)-L-lysyl-[protein] + CoA</text>
            <dbReference type="Rhea" id="RHEA:17017"/>
            <dbReference type="Rhea" id="RHEA-COMP:10475"/>
            <dbReference type="Rhea" id="RHEA-COMP:10478"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:83100"/>
            <dbReference type="ChEBI" id="CHEBI:83111"/>
            <dbReference type="EC" id="2.3.1.12"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>(R)-lipoate</name>
            <dbReference type="ChEBI" id="CHEBI:83088"/>
        </cofactor>
        <text evidence="7">Binds 1 lipoyl cofactor covalently.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Forms a 24-polypeptide structural core with octahedral symmetry.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the 2-oxoacid dehydrogenase family.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.12" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78158.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899606.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0894"/>
    <dbReference type="EnsemblBacteria" id="SHG78158">
        <property type="protein sequence ID" value="SHG78158"/>
        <property type="gene ID" value="SAMN05444003_0894"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043231">
        <property type="term" value="C:intracellular membrane-bounded organelle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045254">
        <property type="term" value="C:pyruvate dehydrogenase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004742">
        <property type="term" value="F:dihydrolipoyllysine-residue acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006086">
        <property type="term" value="P:acetyl-CoA biosynthetic process from pyruvate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.559.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003016">
        <property type="entry name" value="2-oxoA_DH_lipoyl-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001078">
        <property type="entry name" value="2-oxoacid_DH_actylTfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000089">
        <property type="entry name" value="Biotin_lipoyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023213">
        <property type="entry name" value="CAT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045257">
        <property type="entry name" value="E2/Pdx1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036625">
        <property type="entry name" value="E3-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006257">
        <property type="entry name" value="LAT1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004167">
        <property type="entry name" value="PSBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011053">
        <property type="entry name" value="Single_hybrid_motif"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23151">
        <property type="entry name" value="PTHR23151"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00198">
        <property type="entry name" value="2-oxoacid_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00364">
        <property type="entry name" value="Biotin_lipoyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02817">
        <property type="entry name" value="E3_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47005">
        <property type="entry name" value="SSF47005"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51230">
        <property type="entry name" value="SSF51230"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01349">
        <property type="entry name" value="PDHac_trf_mito"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50968">
        <property type="entry name" value="BIOTINYL_LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00189">
        <property type="entry name" value="LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51826">
        <property type="entry name" value="PSBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="5" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="4 7" id="KW-0450">Lipoyl</keyword>
    <keyword evidence="11" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Lipoyl-binding" evidence="9">
        <location>
            <begin position="2"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="domain" description="Peripheral subunit-binding (PSBD)" evidence="10">
        <location>
            <begin position="134"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="90"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000925"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007317"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00025211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU361137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG78158.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="440" mass="45412" checksum="57895A1323512C18" modified="2017-03-15" version="1">MPIELLMPALSPTMEEGTLAKWLVKEGDTVSSGDLIAEIETDKATMEFEAVDEGVMGKILVAEGTEGVKVNDVIAILLEDGESADDIGAAPAAKAPEAASADAGTEAAPAGGSDTPAAPAPAPAAPSRDGTRIFATPLARRIAADKGLDLAAIPGTGPHGRIVKADVEGASPAAAKPAATAAAPAPAAAPAATAVASGPSTDVVLKTYADRPHEEVSLDGMRKTIAARLTEAKQSVPHFYLRRDINLDPLLKFRSQLNKQLEERGVKLSVNDFIIKACALALQQVPEANAVWAGDRTLKFERSDVAVAVAIEGGLFTPVLQDADMKSLSALSVQMKDLASRARDRKLAPHEYQGGSFAISNLGMFGIDNFDAIINPPHAAILAVGAGVKKPIVGEDGELAVATVMSVTLSVDHRVIDGALGADLLKAIKANLENPMGMLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MNU7</accession>
    <name>A0A1M5MNU7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 6">30S ribosomal protein S6</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rpsF</name>
        <name evidence="8" type="ORF">SAMN05444003_0907</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 6">Binds together with S18 to 16S ribosomal RNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the bacterial ribosomal protein bS6 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78443.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900415.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0907"/>
    <dbReference type="EnsemblBacteria" id="SHG78443">
        <property type="protein sequence ID" value="SHG78443"/>
        <property type="gene ID" value="SAMN05444003_0907"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00473">
        <property type="entry name" value="bS6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00360">
        <property type="entry name" value="Ribosomal_S6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000529">
        <property type="entry name" value="Ribosomal_S6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020814">
        <property type="entry name" value="Ribosomal_S6_plastid/chlpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035980">
        <property type="entry name" value="Ribosomal_S6_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014717">
        <property type="entry name" value="Transl_elong_EF1B/ribosomal_S6"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21011">
        <property type="entry name" value="PTHR21011"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01250">
        <property type="entry name" value="Ribosomal_S6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54995">
        <property type="entry name" value="SSF54995"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00166">
        <property type="entry name" value="S6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 6 8" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="6" id="KW-0699">rRNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="96"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00016787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00360"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG78443.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="117" mass="13706" checksum="C02C039C33358A91" modified="2017-03-15" version="1">MPLYEHVMIARQDLSNTQAESLIEHFGTVLADNDGKLLESEYWGVKTMAYKINKNRKGHYALLRTDAPAPAVQEMERLMRLHEDVMRVLTIKVDAHEEGPSIQMQKRDERDSRRERR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MQE7</accession>
    <name>A0A1M5MQE7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7">Acyl-homoserine-lactone synthase</fullName>
            <ecNumber evidence="2 7">2.3.1.184</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Autoinducer synthesis protein</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_0931</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>a fatty acyl-[ACP] + S-adenosyl-L-methionine = an N-acyl-L-homoserine lactone + H(+) + holo-[ACP] + S-methyl-5'-thioadenosine</text>
            <dbReference type="Rhea" id="RHEA:10096"/>
            <dbReference type="Rhea" id="RHEA-COMP:9685"/>
            <dbReference type="Rhea" id="RHEA-COMP:14125"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17509"/>
            <dbReference type="ChEBI" id="CHEBI:55474"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:64479"/>
            <dbReference type="ChEBI" id="CHEBI:138651"/>
            <dbReference type="EC" id="2.3.1.184"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="6 7">Belongs to the autoinducer synthase family.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.184" evidence="2 7"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79003.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899660.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0931"/>
    <dbReference type="EnsemblBacteria" id="SHG79003">
        <property type="protein sequence ID" value="SHG79003"/>
        <property type="gene ID" value="SAMN05444003_0931"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061579">
        <property type="term" value="F:N-acyl homoserine lactone synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009372">
        <property type="term" value="P:quorum sensing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018311">
        <property type="entry name" value="Autoind_synth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001690">
        <property type="entry name" value="Autoind_synthase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39322">
        <property type="entry name" value="PTHR39322"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00765">
        <property type="entry name" value="Autoind_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01549">
        <property type="entry name" value="AUTOINDCRSYN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00949">
        <property type="entry name" value="AUTOINDUCER_SYNTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51187">
        <property type="entry name" value="AUTOINDUCER_SYNTH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6 7" id="KW-0071">Autoinducer synthesis</keyword>
    <keyword evidence="3 6 7" id="KW-0673">Quorum sensing</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="4 7" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001153"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012340"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022654"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU361135"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG79003.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="218" mass="24304" checksum="4827BF61F7026BC2" modified="2017-03-15" version="1">MKNMAFNFTQLAKYDDAFFRFLELRKRFFVDQLEWDIPHDDAMEMDQYDNPTAWYSLVEYNGEIVGGARTMPTNARWGSHGCMLTDAINGKLVDIPDTVLSDAVSEPSIWECTRLVISDDLDTQVERAQCLYLIVSGLVEMAASQQAQHLISLSPLALTRALRQLGFGAKRIGAPYLNEGDGRRYAVLTMPAVPSSKSQAVVIPASPKPAEERQLALS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MUC5</accession>
    <name>A0A1M5MUC5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 8">Glutamine--fructose-6-phosphate aminotransferase [isomerizing]</fullName>
            <ecNumber evidence="2 8">2.6.1.16</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">D-fructose-6-phosphate amidotransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">GFAT</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Glucosamine-6-phosphate synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Hexosephosphate aminotransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">L-glutamine--D-fructose-6-phosphate amidotransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">glmS</name>
        <name evidence="11" type="ORF">SAMN05444003_1031</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>D-fructose 6-phosphate + L-glutamine = D-glucosamine 6-phosphate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:13237"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:58725"/>
            <dbReference type="ChEBI" id="CHEBI:61527"/>
            <dbReference type="EC" id="2.6.1.16"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EC" id="2.6.1.16" evidence="2 8"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80970.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899771.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1031"/>
    <dbReference type="EnsemblBacteria" id="SHG80970">
        <property type="protein sequence ID" value="SHG80970"/>
        <property type="gene ID" value="SAMN05444003_1031"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004360">
        <property type="term" value="F:glutamine-fructose-6-phosphate transaminase (isomerizing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901137">
        <property type="term" value="P:carbohydrate derivative biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd05008">
        <property type="entry name" value="SIS_GlmS_GlmD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd05009">
        <property type="entry name" value="SIS_GlmS_GlmD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00164">
        <property type="entry name" value="GlmS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017932">
        <property type="entry name" value="GATase_2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035466">
        <property type="entry name" value="GlmS/AgaS_SIS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035490">
        <property type="entry name" value="GlmS/FrlB_SIS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005855">
        <property type="entry name" value="GlmS_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001347">
        <property type="entry name" value="SIS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10937:SF0">
        <property type="entry name" value="PTHR10937:SF0"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01380">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SSF53697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01135">
        <property type="entry name" value="glmS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51278">
        <property type="entry name" value="GATASE_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51464">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8 11" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <keyword evidence="5 8 11" id="KW-0808">Transferase</keyword>
    <feature type="initiator methionine" description="Removed" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="domain" description="Glutamine amidotransferase type-2" evidence="9">
        <location>
            <begin position="2"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="domain" description="SIS" evidence="10">
        <location>
            <begin position="283"/>
            <end position="422"/>
        </location>
    </feature>
    <feature type="domain" description="SIS" evidence="10">
        <location>
            <begin position="455"/>
            <end position="597"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile; for GATase activity" evidence="8">
        <location>
            <position position="2"/>
        </location>
    </feature>
    <feature type="active site" description="For Fru-6P isomerization activity" evidence="8">
        <location>
            <position position="602"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012916"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00016090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00164"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG80970.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="607" mass="65630" checksum="F5A4819B3BD855A6" modified="2017-03-15" version="1">MCGIVGVLSNHEAAPILVDALKRLEYRGYDSAGIATINDLKLDRRRAVGKLVNLSDLLVHEPLAGKAGIGHTRWATHGAPSVDNAHPHRAGRVAVVHNGIIENFKELREFLAEKDIGYSTDTDTETIALLAQYYLDEGLAPRDAAEQTIARLDGAYALCFLFDGEDNLLIAARKGSPLAIGHGEGEMFVGSDAIALAPMTDRITYLDEGDWAVVTRDSVEIRDANGNIANRDMKVIQIDTAMVDKGGYKHFMAKEIAEQPTVLQGALAHYIDTDTMQVQLPDPGLDFGKVERLSLVACGTAYLACMVAKYWFEQHARLPVEVDVASEFRYREPPVPKGTVALFVSQSGETADTLAALRYMDGRADSILSVVNVPESSIARESDLPLPTLAGAEIGVASTKAFTCQLTTLAMLVLKAAQDRGEMSAEDVAEKLKLLRALPGMINQALNIESQTQALAGELAEARDILFLGRGQMYPLAHEGALKLKEISYIHAEAYASGELKHGPIALVDPNVPVIVMAPRDALFEKTVSNMQEVMARGGKVLLIADEKGAQEAGEGTWRTLIMPEVDDFLAPILYAIPAQLLAYHTAVAKGTDVDQPRNLAKSVTVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MUH5</accession>
    <name>A0A1M5MUH5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="15">Bifunctional protein GlmU</fullName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName evidence="15">UDP-N-acetylglucosamine pyrophosphorylase</fullName>
                <ecNumber evidence="15">2.7.7.23</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="15">N-acetylglucosamine-1-phosphate uridyltransferase</fullName>
            </alternativeName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="15">Glucosamine-1-phosphate N-acetyltransferase</fullName>
                <ecNumber evidence="15">2.3.1.157</ecNumber>
            </recommendedName>
        </domain>
    </protein>
    <gene>
        <name evidence="15" type="primary">glmU</name>
        <name evidence="17" type="ORF">SAMN05444003_1030</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="15">Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="15">
            <text>H(+) + N-acetyl-alpha-D-glucosamine 1-phosphate + UTP = diphosphate + UDP-N-acetyl-alpha-D-glucosamine</text>
            <dbReference type="Rhea" id="RHEA:13509"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:46398"/>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
            <dbReference type="ChEBI" id="CHEBI:57776"/>
            <dbReference type="EC" id="2.7.7.23"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="15">
            <text>acetyl-CoA + alpha-D-glucosamine 1-phosphate = CoA + H(+) + N-acetyl-alpha-D-glucosamine 1-phosphate</text>
            <dbReference type="Rhea" id="RHEA:13725"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:57776"/>
            <dbReference type="ChEBI" id="CHEBI:58516"/>
            <dbReference type="EC" id="2.3.1.157"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="15">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="15">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="15">Bacterial outer membrane biogenesis; LPS lipid A biosynthesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="15">Nucleotide-sugar biosynthesis; UDP-N-acetyl-alpha-D-glucosamine biosynthesis; N-acetyl-alpha-D-glucosamine 1-phosphate from alpha-D-glucosamine 6-phosphate (route II): step 2/2.</text>
    </comment>
    <comment type="pathway">
        <text evidence="15">Nucleotide-sugar biosynthesis; UDP-N-acetyl-alpha-D-glucosamine biosynthesis; UDP-N-acetyl-alpha-D-glucosamine from N-acetyl-alpha-D-glucosamine 1-phosphate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="15">Homotrimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 15">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 15">In the C-terminal section; belongs to the transferase hexapeptide repeat family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 15">In the N-terminal section; belongs to the N-acetylglucosamine-1-phosphate uridyltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.23" evidence="15"/>
    <dbReference type="EC" id="2.3.1.157" evidence="15"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80958.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899770.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1030"/>
    <dbReference type="EnsemblBacteria" id="SHG80958">
        <property type="protein sequence ID" value="SHG80958"/>
        <property type="gene ID" value="SAMN05444003_1030"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00113">
        <property type="reaction ID" value="UER00532"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00973"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019134">
        <property type="term" value="F:glucosamine-1-phosphate N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003977">
        <property type="term" value="F:UDP-N-acetylglucosamine diphosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000902">
        <property type="term" value="P:cell morphogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009245">
        <property type="term" value="P:lipid A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006048">
        <property type="term" value="P:UDP-N-acetylglucosamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
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        <property type="entry name" value="LbH_GlmU_C"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01631">
        <property type="entry name" value="GlmU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005882">
        <property type="entry name" value="Bifunctional_GlmU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038009">
        <property type="entry name" value="GlmU_C_LbH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001451">
        <property type="entry name" value="Hexapep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025877">
        <property type="entry name" value="MobA-like_NTP_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00132">
        <property type="entry name" value="Hexapep"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12804">
        <property type="entry name" value="NTP_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="SSF51161"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01173">
        <property type="entry name" value="glmU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13 15" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="10 15" id="KW-0133">Cell shape</keyword>
    <keyword evidence="14 15" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="4 15" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 15" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7 15" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12 15" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="6 15" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="11 15" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 15" id="KW-0677">Repeat</keyword>
    <keyword evidence="5 15 17" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="NTP_transf_3" evidence="16">
        <location>
            <begin position="6"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="region of interest" description="Pyrophosphorylase" evidence="15">
        <location>
            <begin position="1"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="region of interest" description="UDP-GlcNAc binding" evidence="15">
        <location>
            <begin position="8"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="region of interest" description="UDP-GlcNAc binding" evidence="15">
        <location>
            <begin position="80"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="region of interest" description="UDP-GlcNAc binding" evidence="15">
        <location>
            <begin position="103"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="region of interest" description="Linker" evidence="15">
        <location>
            <begin position="229"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="region of interest" description="N-acetyltransferase" evidence="15">
        <location>
            <begin position="250"/>
            <end position="450"/>
        </location>
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    <feature type="region of interest" description="Acetyl-CoA binding" evidence="15">
        <location>
            <begin position="368"/>
            <end position="369"/>
        </location>
    </feature>
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        <location>
            <position position="345"/>
        </location>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="22"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
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        <location>
            <position position="75"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
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        </ligand>
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        <location>
            <position position="105"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
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        <location>
            <position position="140"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
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        </ligand>
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            <position position="154"/>
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        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
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        </ligand>
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        <location>
            <position position="169"/>
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        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
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        </location>
    </feature>
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        <location>
            <position position="315"/>
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        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
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        </ligand>
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        <location>
            <position position="333"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
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        </ligand>
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        <location>
            <position position="348"/>
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        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
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            <position position="359"/>
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        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
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        </ligand>
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        <location>
            <position position="362"/>
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        <ligand>
            <name>acetyl-CoA</name>
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        </ligand>
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        <location>
            <position position="387"/>
        </location>
        <ligand>
            <name>acetyl-CoA</name>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
        </ligand>
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        <location>
            <position position="405"/>
        </location>
        <ligand>
            <name>acetyl-CoA</name>
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        </ligand>
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        <location>
            <position position="422"/>
        </location>
        <ligand>
            <name>acetyl-CoA</name>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
        </ligand>
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        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
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            <dbReference type="ARBA" id="ARBA00007707"/>
        </source>
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            <dbReference type="ARBA" id="ARBA00007947"/>
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            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
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            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
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            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
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        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
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        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
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            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
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        </source>
    </evidence>
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        <source>
            <dbReference type="Pfam" id="PF12804"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="SHG80958.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="450" mass="47184" checksum="F28C6EFE8566D63B" modified="2017-03-15" version="1">MATALIILAAGKGTRMKSDLPKVLHPIAGAPLLVHAMKSAVPLDAERTIVVAGHGAEAVEKAALNWNPEAQVVVQAEQLGTAHAVAQAKEVLDGFEGTAIVLYGDTPFISSETLEALQEKQASTDVVVLGFDAADPARYGRLVTNGDTLEKIVEFKDASEVERAITLCNSGVVAADAQTLFLLIEAVGNDNAAGEYYLTDIIGIARDRRLSTAVVRCDEAETLGINSRAELVAAEAAFQTRARQAALDDGVAMAAPETVYFAHDTVVGRDAIIEPNVVFASGVTVESGATIRAFSHLEGCHVSRDAVVGPYARLRPGAELQEAAKVGNFVEVKNAVLAEGAKVNHLSYIGDAEIGARTNVGAGTITCNYDGVFKHKTTVGEDAFIGSNTMLVAPVTIGHEAMTASGSVITSDVPDGDLAVARGRQDNKKGLARRMFEKLKSKKAKQAKGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MVL6</accession>
    <name>A0A1M5MVL6_9RHOB</name>
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        <submittedName>
            <fullName evidence="8">Peptide/nickel transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_1044</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
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            <taxon>Rhodobacteraceae</taxon>
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        </lineage>
    </organism>
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        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
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            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
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        <property type="protein sequence ID" value="SHG81247.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
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        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
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    <dbReference type="EnsemblBacteria" id="SHG81247">
        <property type="protein sequence ID" value="SHG81247"/>
        <property type="gene ID" value="SAMN05444003_1044"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
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        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
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        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025966">
        <property type="entry name" value="OppC_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12911">
        <property type="entry name" value="OppC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="33"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="109"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="144"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="174"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="227"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="285"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="7">
        <location>
            <begin position="104"/>
            <end position="303"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG81247.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="317" mass="34989" checksum="B564C949E42F31EB" modified="2017-03-15" version="1">MTDQATVDRIENSVSRSQWWDVWDQFKSHKGAMAGLFFLVSITLFVVIGPWLWQVDPTKLDIRSKDIRPIYTALWNGDAKVSWSHPLGTDNLGRDIMANLMQGGRISLAVGWTAMILAVFLGTTVGVLAGYFRRLDGILMRFTDLMLALPLLPLLLVMMLLFRDSLRAALGPEQGIFVLVVVGIGITSWMQTARIVRGDILAIKEREFVLAARSIGTPSGKMITRHLLPNVLSPIMVSATLGLATAIITESALSFLGLGFPPDFATWGKILNDSVPRMVNFPERVILPGMMISLTVLSVNYIGDGLRDALDPRLRGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MY89</accession>
    <name>A0A1M5MY89_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1088</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899820.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG82175">
        <property type="protein sequence ID" value="SHG82175"/>
        <property type="gene ID" value="SAMN05444003_1088"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="47"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="82"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG82175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="107" mass="11836" checksum="ED3F41491F4E9E48" modified="2017-03-15" version="1">MTYRTQLFLTFALSLLALGLLYACLPLLPDSRSADLTTLDNVLLGVVYVSLLISFIMALAFGVSWVMWVLSKNEPDTTAMPLTFRLKGAGTIFVLAMISYSSYFLLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MYX2</accession>
    <name>A0A1M5MYX2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Glycine--tRNA ligase alpha subunit</fullName>
            <ecNumber evidence="9">6.1.1.14</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Glycyl-tRNA synthetase alpha subunit</fullName>
            <shortName evidence="9">GlyRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">glyQ</name>
        <name evidence="10" type="ORF">SAMN05444003_1098</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly)</text>
            <dbReference type="Rhea" id="RHEA:16013"/>
            <dbReference type="Rhea" id="RHEA-COMP:9664"/>
            <dbReference type="Rhea" id="RHEA-COMP:9683"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78522"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.14"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="3 9">Tetramer of two alpha and two beta subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the class-II aminoacyl-tRNA synthetase family.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.14" evidence="9"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82415.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900430.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1098"/>
    <dbReference type="EnsemblBacteria" id="SHG82415">
        <property type="protein sequence ID" value="SHG82415"/>
        <property type="gene ID" value="SAMN05444003_1098"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004820">
        <property type="term" value="F:glycine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006426">
        <property type="term" value="P:glycyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00733">
        <property type="entry name" value="GlyRS_alpha_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00254">
        <property type="entry name" value="Gly_tRNA_synth_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006194">
        <property type="entry name" value="Gly-tRNA-synth_heterodimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002310">
        <property type="entry name" value="Gly-tRNA_ligase_asu"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02091">
        <property type="entry name" value="tRNA-synt_2e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01044">
        <property type="entry name" value="TRNASYNTHGA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00388">
        <property type="entry name" value="glyQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50861">
        <property type="entry name" value="AA_TRNA_LIGASE_II_GLYAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9 10" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="6 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7 9" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG82415.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="306" mass="34342" checksum="463A5A6BFC45EE5C" modified="2017-03-15" version="1">MADKPRSFQEIILRLQSYWAGQGCAIMQPYDMEVGAGTFHPATTLRALGSNAWAAAYVQPSRRPTDGRYGENPNRLQHYYQYQVLIKPSPPDLQDLYLGSLAAIGIDAEMHDIRFVEDDWESPTLGAWGLGWEVWCDGMEVSQFTYFQQVGGHDCKPVSGELTYGLERLAMYVLGVDHVMDMPFNDPQSPIPLMYGDVFKQTEEEYARWNFDVADTDTLLQHFKDAEAECARILAEPHDDPKTGKRIIMAHPAYDQCIKASHVFNLLDARGVISVTERQAYIGRVRALAKQCADAFVQTEAGGHAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N2U3</accession>
    <name>A0A1M5N2U3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Transcription antitermination protein NusB</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Antitermination factor NusB</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">nusB</name>
        <name evidence="8" type="ORF">SAMN05444003_1142</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the NusB family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83489.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899865.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1142"/>
    <dbReference type="EnsemblBacteria" id="SHG83489">
        <property type="protein sequence ID" value="SHG83489"/>
        <property type="gene ID" value="SAMN05444003_1142"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006353">
        <property type="term" value="P:DNA-templated transcription, termination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031564">
        <property type="term" value="P:transcription antitermination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.940.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00073">
        <property type="entry name" value="NusB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035926">
        <property type="entry name" value="NusB-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011605">
        <property type="entry name" value="NusB_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006027">
        <property type="entry name" value="NusB_RsmB_TIM44"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11078">
        <property type="entry name" value="PTHR11078"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01029">
        <property type="entry name" value="NusB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48013">
        <property type="entry name" value="SSF48013"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01951">
        <property type="entry name" value="nusB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5 6" id="KW-0804">Transcription</keyword>
    <keyword evidence="2 6" id="KW-0889">Transcription antitermination</keyword>
    <keyword evidence="4 6" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="NusB" evidence="7">
        <location>
            <begin position="14"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005952"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG83489.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="155" mass="17608" checksum="55885A9DEB32B05E" modified="2017-03-15" version="1">MTVSNNQKRKMKSAARLYATQALFQMEHSGQSVDDVAREFEDHRFGAVYDDVEMQEGDLDTFRALMEWAVNEQAKIDQLTDRALVAKWPLGRIDPTLRALFRAAGAEMLESDTPPKVIITEFVDIAGAFCTDDKEPRFVNAVLDHMAHEVMPEKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N9M8</accession>
    <name>A0A1M5N9M8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1265</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899970.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1265"/>
    <dbReference type="EnsemblBacteria" id="SHG86244">
        <property type="protein sequence ID" value="SHG86244"/>
        <property type="gene ID" value="SAMN05444003_1265"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="340"/>
            <end position="362"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG86244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="365" mass="41715" checksum="D0D8E18C38405907" modified="2017-03-15" version="1">MTDAVIEEHRFPCDACGSDLRYDPSERELTCDHCGNKQFIETPSHVSGGLKELDFHTAIQDQLPDAEIEETRVINCQNCSAQIEFQKDVHATECPYCATPVVSDTGLHRHIKPRGVLPFAMEEKQARGALKSWLGGLWFAPNGLREYARKGRKMNGIYVPYWTFDADTKSRYSGQRGTYYYETRTVMRDGKRQQVRVRKTRWRSASGRVARFFDDVLVLASRSLPKNYTDGLEPWDLSELEPYNPEFLAGFRAEGYQVDLEDGFKEARDYMDRMILRDVKYDIGGDQQRVSSVDTTVKDVTFKHILLPVWVAAYKYRGETYRFVVNGRTGRVQGERPYSAWKIGFAVLIGLIIAIGVGFVIANSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N9W3</accession>
    <name>A0A1M5N9W3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Membrane protease subunit, stomatin/prohibitin family, contains C-terminal Zn-ribbon domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1264</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86232.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899969.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1264"/>
    <dbReference type="EnsemblBacteria" id="SHG86232">
        <property type="protein sequence ID" value="SHG86232"/>
        <property type="gene ID" value="SAMN05444003_1264"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd03408">
        <property type="entry name" value="SPFH_like_u1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.479.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036013">
        <property type="entry name" value="Band_7/SPFH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025640">
        <property type="entry name" value="GYF_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033880">
        <property type="entry name" value="SPFH_YdjI"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13421">
        <property type="entry name" value="Band_7_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14237">
        <property type="entry name" value="GYF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117892">
        <property type="entry name" value="SSF117892"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Band_7_1" evidence="1">
        <location>
            <begin position="26"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="domain" description="GYF_2" evidence="2">
        <location>
            <begin position="308"/>
            <end position="357"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13421"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG86232.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="371" mass="40445" checksum="0B18075DFB66284E" modified="2017-03-15" version="1">MGILDFLTGEFIDVIHWTDETRDTMVWRFERHGHEIKYGAKLTVREGQAAVFVHEGQLADVFTPGLYMLETNNMPIMTTLQHWDHGFKSPFKSEIYFVNTTRFSNLKWGTKNPIMIRDPEFGPTRIRAFGTYTIKVSDPATFMREIVGTDGEFTMDEISFQIRNIIVQEFSRVIAQSGIPILDMAANTAELGKLIATAIDPTMKEYGLTIPELYIENISLPPAVEAALDKRTSMGLAGDLSNFTQYSAAEAMTAAATNPNGGGGMGAGLGMGMGMAMAQQMAQGPWGAAAQPAAAAPPPPPPPVEHVWHIAKDGNVTGPFSKATMGQKVSSGELTRESMVWTQGQDGWLPAEDVQELAQLFTVLPPPPPPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NA39</accession>
    <name>A0A1M5NA39_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1274</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86404.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899978.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1274"/>
    <dbReference type="EnsemblBacteria" id="SHG86404">
        <property type="protein sequence ID" value="SHG86404"/>
        <property type="gene ID" value="SAMN05444003_1274"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025961">
        <property type="entry name" value="Metal_resist"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13801">
        <property type="entry name" value="Metal_resist"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG86404.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="156" mass="17158" checksum="F1B3FD64B2A3E4E7" modified="2017-03-15" version="1">MADSSEQKPRRLWKVIFAVSLAFNVAVIGVVAGVGFRFAGGKPPQAFEIGLGPIGMALTPEQRREIGRSLRRNPELRELGRSRSDGMIENVLEVLRAETFDPVALDQALAGARERARVLQSAARAAFVAQVESMTQDERAAFADKLERASQQRRKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NCD6</accession>
    <name>A0A1M5NCD6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Prepilin peptidase CpaA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1331</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase A24 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87286.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900027.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1331"/>
    <dbReference type="EnsemblBacteria" id="SHG87286">
        <property type="protein sequence ID" value="SHG87286"/>
        <property type="gene ID" value="SAMN05444003_1331"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000045">
        <property type="entry name" value="Prepilin_IV_endopep_pep"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01478">
        <property type="entry name" value="Peptidase_A24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="6"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="35"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="58"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="89"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="144"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_A24" evidence="3">
        <location>
            <begin position="15"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG87286.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="165" mass="18271" checksum="FEA55EEA8F2D098A" modified="2017-03-15" version="1">MPLTAYAAGWFLIAALPISFWVAWSDLRSMKIPNYAVYALLGSYAVLGLIALPFEQYLWHWTHAVVMLVVGMALWAARAMGAGDSKFIAAAAPMVAFADWQLMVLILSATMLAGVAAHRIAKHTPIRSIVPDWESWGPQKAKKFPMGFPLGMSLVFYLGYVFFTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NG25</accession>
    <name>A0A1M5NG25_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Vitamin B12-dependent ribonucleotide reductase</fullName>
            <ecNumber evidence="10">1.17.4.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">SAMN05444003_1399</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>[thioredoxin]-disulfide + a 2'-deoxyribonucleoside 5'-diphosphate + H2O = [thioredoxin]-dithiol + a ribonucleoside 5'-diphosphate</text>
            <dbReference type="Rhea" id="RHEA:23252"/>
            <dbReference type="Rhea" id="RHEA-COMP:10698"/>
            <dbReference type="Rhea" id="RHEA-COMP:10700"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:50058"/>
            <dbReference type="ChEBI" id="CHEBI:57930"/>
            <dbReference type="ChEBI" id="CHEBI:73316"/>
            <dbReference type="EC" id="1.17.4.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 10">
            <name>adenosylcob(III)alamin</name>
            <dbReference type="ChEBI" id="CHEBI:18408"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3 10">Belongs to the ribonucleoside diphosphate reductase class-2 family.</text>
    </comment>
    <dbReference type="EC" id="1.17.4.1" evidence="10"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88514.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900459.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1399"/>
    <dbReference type="EnsemblBacteria" id="SHG88514">
        <property type="protein sequence ID" value="SHG88514"/>
        <property type="gene ID" value="SAMN05444003_1399"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031419">
        <property type="term" value="F:cobalamin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004748">
        <property type="term" value="F:ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071897">
        <property type="term" value="P:DNA biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02888">
        <property type="entry name" value="RNR_II_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000788">
        <property type="entry name" value="RNR_lg_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013509">
        <property type="entry name" value="RNR_lsu_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013344">
        <property type="entry name" value="RNR_NrdJ/NrdZ"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02867">
        <property type="entry name" value="Ribonuc_red_lgC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00317">
        <property type="entry name" value="Ribonuc_red_lgN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01183">
        <property type="entry name" value="RIBORDTASEM1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02504">
        <property type="entry name" value="NrdJ_Z"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 10" id="KW-0846">Cobalamin</keyword>
    <keyword evidence="9 10" id="KW-0170">Cobalt</keyword>
    <keyword evidence="8" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="6" id="KW-0235">DNA replication</keyword>
    <keyword evidence="5 10" id="KW-0237">DNA synthesis</keyword>
    <keyword evidence="10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7 10" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ribonuc_red_lgN" evidence="11">
        <location>
            <begin position="11"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="domain" description="RIBORED_LARGE" evidence="12">
        <location>
            <begin position="85"/>
            <end position="551"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022628"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU364064"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00317"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF02867"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHG88514.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="760" mass="82947" checksum="29FDC3B6B3DBB8AE" modified="2017-03-15" version="1">MTRFSAPIAEQIWDMKYRFKDADGTPIDDTVEDTWRRIASSLASVEKDPKAWEDKFYSALEDFKYLPAGRITAGAGTARSVTLFNCFVMGTVPDDMGGIFDMLKEAALTMQQGGGIGYDFSTIRPKGAAVKGVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDILDFITAKSDPARLRMFNMSVLVTDPFMEAVKSGGAWDLVFDGKTYGNVQARELWDQIMQSTYDYAEPGVIFIDRINQMNNLNYCEIIAATNPCGEQPLPPYGACLLGSINLARLVSDPFEAEAALDEEALNDLVATAVRMMDNVVDASKFPLEAQAQEAAAKRRIGLGVTGLADALLMMGLRYGSEEAARQTDRWMHAIARAAYLASVNLAAEKGAFPLFDADKFLASGAMQDMDEDVKEAIREHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVDYAVQMWRDLKGDAPLPDYFVNAQTLAPLDHVRMQAAAQKWIDSSISKTINCPEDISFEAFKEVYMEAWDTGCKGCTTYRPNDVTGSVLSVSEEKPADEAPAQVTVDGDGAEVVYMSEPLDRPQELDGATYKLKWPDSEHAIYITVNDLVVAGHRRPFEVFINSKNMEHFAWTVALTRMISAVFRRGGDVSFVVEELKAVFDPRGGAWMGGKYVPSILAAIGGVIEKHMIATGFLAGEGMGLKEDPKADVVALNQKPKGQACSSCGSYELRMVEGCMTCASCGYSKCG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NHJ7</accession>
    <name>A0A1M5NHJ7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">SH3-like domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1419</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88915.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1419"/>
    <dbReference type="EnsemblBacteria" id="SHG88915">
        <property type="protein sequence ID" value="SHG88915"/>
        <property type="gene ID" value="SAMN05444003_1419"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010466">
        <property type="entry name" value="DUF1058"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06347">
        <property type="entry name" value="SH3_4"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009912599" evidence="1">
        <location>
            <begin position="24"/>
            <end position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG88915.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="178" mass="19934" checksum="E230ABB5AFB8AA84" modified="2017-03-15" version="1">MRANWRRLLWLGVAMCLAHAVSAQEVSQASNAPAPAPALGPETNLPLPRYVSLKANESNVRRGPSLSHRIDWVFQRKSMPLQVVAEYGHWRRVIDRDGLGGWVHYTMLSGVRTVIIEEQIGLLRRPETEALETAILEAGVIARLGECDTDWCRLTAGGYRGWAQKAQLWGVLPDEVRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NMJ3</accession>
    <name>A0A1M5NMJ3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">DoxX-like family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1502</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the DoxX family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900177.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG90771">
        <property type="protein sequence ID" value="SHG90771"/>
        <property type="gene ID" value="SAMN05444003_1502"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032808">
        <property type="entry name" value="DoxX"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13564">
        <property type="entry name" value="DoxX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="46"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="75"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="102"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG90771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="130" mass="13457" checksum="BDE094D51D49C8F9" modified="2017-03-15" version="1">MSKKTMALWGAQVLLAAVFALAGFMKATQPIPDLAAMMGWPGEVPVALVRFIGAAELAAAAGLILPVLTGIMPRLTALAALGLATIQVLAMGLHIYRGELEVLPVNAVLLALAVYVILGRRTSRSVPATA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NNC7</accession>
    <name>A0A1M5NNC7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1513</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91020.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900187.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1513"/>
    <dbReference type="EnsemblBacteria" id="SHG91020">
        <property type="protein sequence ID" value="SHG91020"/>
        <property type="gene ID" value="SAMN05444003_1513"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019634">
        <property type="term" value="P:organic phosphonate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008773">
        <property type="entry name" value="PhnI"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05861">
        <property type="entry name" value="PhnI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF007313">
        <property type="entry name" value="PhnI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG91020.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="362" mass="40280" checksum="74CB3D45E99FC6A3" modified="2017-03-15" version="1">MYVAVKGGERAIENAHAWLAEERRGDTKVAELTIEQIREQLSLSVHRVMAEGSLYDPDLAALAIKQSRGDLIEAIFLIRAYRTTLPRFGSSKPIDTGVMDCDRRISATFKDLPGGQILGPTFDYTHRLLDFKLAADGEVAEAPSRDVEPADVPHVTEFLNQEGLIEEAPHDDTMPPDLTREPLEMPADRALRLQALTRSDEGFTLGMAYSTQRGYGRNHAFVGELRIGSVPVEMEILELGFSIEIGEITLTECETVNQFTGSKTEPPQFTRGYGLVFGQTERKAISMALVDRALRWEELGEDSAGAPAQDAEFVLYHADNIQATGFLEHIKLPHYVDFQSELELVRKLRREAGAHQVQEAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NNJ1</accession>
    <name>A0A1M5NNJ1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, GntR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1516</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91092.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900190.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1516"/>
    <dbReference type="EnsemblBacteria" id="SHG91092">
        <property type="protein sequence ID" value="SHG91092"/>
        <property type="gene ID" value="SAMN05444003_1516"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1410.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028978">
        <property type="entry name" value="Chorismate_lyase_/UTRA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012702">
        <property type="entry name" value="CP_lyase_PhnF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011663">
        <property type="entry name" value="UTRA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07702">
        <property type="entry name" value="UTRA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00035">
        <property type="entry name" value="HTHGNTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00866">
        <property type="entry name" value="UTRA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64288">
        <property type="entry name" value="SSF64288"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02325">
        <property type="entry name" value="C_P_lyase_phnF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="1">
        <location>
            <begin position="8"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG91092.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="239" mass="25798" checksum="ECFD9664ECCE4E3E" modified="2017-03-15" version="1">MSDISPKTPVWKAIANALRSDLAEGRYTPGDKLPTEAALAERFGVNRHTVRHGISALVEEGLIRTRRGAGAFVAATPTDYPIGRRVRFHENLIAAGRRPEKRVLHVEERLATEGEAQALRIPSGVRICAYHALSLADGQPVAVVESVFPSDRLIGLATALAENTSITEALKVVGVEDYTRASTRLTAVRASATQALHLNVTEGDPLLKSTSVNVDASGRPVEYGRTWFAGDRVTLTLEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NT05</accession>
    <name>A0A1M5NT05_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">N5-carboxyaminoimidazole ribonucleotide synthase</fullName>
            <shortName evidence="3 5">N5-CAIR synthase</shortName>
            <ecNumber evidence="3 5">6.3.4.18</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3 5">5-(carboxyamino)imidazole ribonucleotide synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3 5" type="primary">purK</name>
        <name evidence="7" type="ORF">SAMN05444003_1557</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).</text>
    </comment>
    <comment type="function">
        <text evidence="5">Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)- to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 5">
            <text>5-amino-1-(5-phospho-beta-D-ribosyl)imidazole + ATP + hydrogencarbonate = 5-carboxyamino-1-(5-phospho-D-ribosyl)imidazole + ADP + 2 H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:19317"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17544"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58730"/>
            <dbReference type="ChEBI" id="CHEBI:137981"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.4.18"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 5">Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate from 5-amino-1-(5-phospho-D-ribosyl)imidazole (N5-CAIR route): step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3 5">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 5">Belongs to the PurK/PurT family.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.18" evidence="3 5"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG92093.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900226.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1557"/>
    <dbReference type="EnsemblBacteria" id="SHG92093">
        <property type="protein sequence ID" value="SHG92093"/>
        <property type="gene ID" value="SAMN05444003_1557"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00942"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034028">
        <property type="term" value="F:5-(carboxyamino)imidazole ribonucleotide synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004638">
        <property type="term" value="F:phosphoribosylaminoimidazole carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01928">
        <property type="entry name" value="PurK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003135">
        <property type="entry name" value="ATP-grasp_carboxylate-amine"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005875">
        <property type="entry name" value="PurK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040686">
        <property type="entry name" value="PurK_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011054">
        <property type="entry name" value="Rudment_hybrid_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02222">
        <property type="entry name" value="ATP-grasp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17769">
        <property type="entry name" value="PurK_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51246">
        <property type="entry name" value="SSF51246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01161">
        <property type="entry name" value="purK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 5" id="KW-0436">Ligase</keyword>
    <keyword evidence="3 4 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="1 3 5" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-grasp" evidence="6">
        <location>
            <begin position="111"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="107"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="147"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="152"/>
            <end position="158"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="182"/>
            <end position="185"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="190"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="213"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="266"/>
            <end position="267"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU361200"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG92093.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="357" mass="37766" checksum="321F401AB0AD80AB" modified="2017-03-15" version="1">MTNPLSTGATIGILGGGQLGRMLSVAASRLGFKTCIYEPGGDSPASHVANYHFQKGYDDLDALKQFAQSVGVITYEFENIPTSALDALEAIKPIHPNRTALATSQDRLTEKDFLASLGLKTAPYADVTDAASLEAAIATIGTPAILKTRRMGYDGKGQSRLKSPDDAVKALADMNGAPAILEGFVDFSHEVSVIAARSLDGAVSCYDPGENVHSDGILSTTTVPANLTSAQRTDAVLLAAQILNALDYVGVLGVELFVTPQGLIVNEIAPRVHNSGHWTQNGCTICQFEQHIRAIAGWPLGDGSRHSDVVMENLIGDDVLRIPDIAKTTDAIHLYGKADAKPGRKMGHVNRITGHAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PJK1</accession>
    <name>A0A1M5PJK1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1675</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH01857.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900497.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH01857">
        <property type="protein sequence ID" value="SHH01857"/>
        <property type="gene ID" value="SAMN05444003_1675"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="5"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH01857.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="293" mass="32868" checksum="EBD9729E8B81C7B6" modified="2017-03-15" version="1">MNGKVPWQLLQSMAAIAEHGSLSAAAREVGVSQPTLSRHLSTLEDLLGDRLFDRTREGMALTVKGEQLFQEVRSMADTAGRISRKGEEEADDLSGTVRISASQIVATYLLPDILTELRRKTPHLAYEVVASDTSQNLIRREADIAVRMYRPRQSDLFIRKVAELKLGIFAHRDYMAGKDTITVDNFMSFDVIGYDRSSLILDGMRALGMKVDRDDFAFRSDDQVVCWNMVRAGYGLGMMQVELGKRDPNLVHFASEIDIGSMPVWLAAHKELKSSPRIRMVFDHLATSFQRAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PJL8</accession>
    <name>A0A1M5PJL8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1683</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02016.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH02016">
        <property type="protein sequence ID" value="SHH02016"/>
        <property type="gene ID" value="SAMN05444003_1683"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012793474" evidence="2">
        <location>
            <begin position="22"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="85"/>
            <end position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH02016.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="121" mass="13507" checksum="38E2F35190F5B97D" modified="2017-03-15" version="1">MNHLLTTTAISMILTATGATAATIEEQVKTELLSRGYEEIEVQNANDRVAVAAVRNTVVLEIVYDALTGEVLVHHVEELDVEELSEADVFDLLDEDDEDEDDDEDDEDDEVEDDDDDDHDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PL36</accession>
    <name>A0A1M5PL36_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1680</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH01963.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1680"/>
    <dbReference type="EnsemblBacteria" id="SHH01963">
        <property type="protein sequence ID" value="SHH01963"/>
        <property type="gene ID" value="SAMN05444003_1680"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018714">
        <property type="entry name" value="DUF2237"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37466">
        <property type="entry name" value="PTHR37466"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09996">
        <property type="entry name" value="DUF2237"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH01963.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="126" mass="13556" checksum="9ADE8788A7188DCB" modified="2017-03-15" version="1">MIEKDPSLNVLGGALAPCSTDPMTGFFRNGSCDTCDRDTGSHTVCAVMTEEFLAYSKYVGNDLSTPRPQWGFPGLNPGDHWCLCASRFLQAHEEGCAPKVNLDATHVKALNIVPIEVLTENASPEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PL51</accession>
    <name>A0A1M5PL51_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Ferric uptake regulation protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">fur</name>
        <name evidence="3" type="ORF">SAMN05444003_1705</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Acts as a global negative controlling element, employing Fe(2+) as a cofactor to bind the operator of the repressed genes.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the Fur family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02462.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900521.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1705"/>
    <dbReference type="EnsemblBacteria" id="SHH02462">
        <property type="protein sequence ID" value="SHH02462"/>
        <property type="gene ID" value="SAMN05444003_1705"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd07153">
        <property type="entry name" value="Fur_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002481">
        <property type="entry name" value="FUR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33202">
        <property type="entry name" value="PTHR33202"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01475">
        <property type="entry name" value="FUR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0678">Repressor</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002997"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU364037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH02462.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="138" mass="15382" checksum="61F7C057F806A831" modified="2017-03-15" version="1">MSDVETVRSTEWLAGADLRPTRQRMTLAKLLVGDGQNRHVTAESLFEAATKRDEKVSLATVYNTLRAFCDAGLMREITVDGSKSYFDTNMSDHPHFYWEDTATLTDAPAEELEFSKVPDAPSGAEIASVDVVIRLRRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PNK1</accession>
    <name>A0A1M5PNK1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">1-acyl-sn-glycerol-3-phosphate acyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1723</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02803.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900536.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1723"/>
    <dbReference type="EnsemblBacteria" id="SHH02803">
        <property type="protein sequence ID" value="SHH02803"/>
        <property type="gene ID" value="SAMN05444003_1723"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002123">
        <property type="entry name" value="Plipid/glycerol_acylTrfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01553">
        <property type="entry name" value="Acyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00563">
        <property type="entry name" value="PlsC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PlsC" evidence="1">
        <location>
            <begin position="40"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH02803.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="213" mass="23801" checksum="42ACA83D9E70FA12" modified="2017-03-15" version="1">MKYLRALAARIVGQAIRIFCRAITAVRADWRGIEPVPRQRVYYSNHTSNADMPMIWSVLPPALRREVRPVAAADYWLKNKVRAFVGPEVFNCVLIDRRPEVDDKPLDTIIKALDDGSSLIIFPEGNRNMGDDPLLPFKAGLYNMGLARPEVDLVPTWVANLNEIMPKGEIIPLPLICTVTFGEPVHVQEGESKDDFLARAADALVALRPEDDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PP46</accession>
    <name>A0A1M5PP46_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">Beta-galactosidase</fullName>
            <shortName evidence="5">Beta-gal</shortName>
            <ecNumber evidence="3 5">3.2.1.23</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_1755</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>Hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides.</text>
            <dbReference type="EC" id="3.2.1.23"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the glycosyl hydrolase 42 family.</text>
    </comment>
    <dbReference type="EC" id="3.2.1.23" evidence="3 5"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03461.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900561.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1755"/>
    <dbReference type="EnsemblBacteria" id="SHH03461">
        <property type="protein sequence ID" value="SHH03461"/>
        <property type="gene ID" value="SAMN05444003_1755"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009341">
        <property type="term" value="C:beta-galactosidase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004565">
        <property type="term" value="F:beta-galactosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013738">
        <property type="entry name" value="Beta_galactosidase_Trimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003476">
        <property type="entry name" value="Glyco_hydro_42"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013529">
        <property type="entry name" value="Glyco_hydro_42_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36447">
        <property type="entry name" value="PTHR36447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02449">
        <property type="entry name" value="Glyco_hydro_42"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08532">
        <property type="entry name" value="Glyco_hydro_42M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001084">
        <property type="entry name" value="B-galactosidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_hydro_42" evidence="8">
        <location>
            <begin position="8"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_hydro_42M" evidence="9">
        <location>
            <begin position="401"/>
            <end position="588"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="6">
        <location>
            <position position="144"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="6">
        <location>
            <position position="315"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="105"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="143"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="323"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001412"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005940"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012756"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR001084"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR001084-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR001084-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02449"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF08532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH03461.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="633" mass="71928" checksum="424B12A96F5C8A29" modified="2017-03-15" version="1">MKRTLGVCYYPEHWPEEMWADDARRMVETGLSWVRIGEFAWQRMEPSRGTFDWGWLDRAVETLGSADLKIIMGTPTATPPRWLVDEMPDMLPVDADGRVRKFGSRRHYDFSHQGYRKECQRIVRLMGERYGANPHIAAWQIDNEYDCHDTALSYSDAALTGFRDWLAQRYQSTDAMNRAWGNVFWSMDYDHFDQIELPNLTVTEPNPAHVLAFRRYSSDQVVAFNKVQADELRKHTDAPLIHNYMGRVTTFDHWAVGKDLDIASWDSYPIGFLSDRIEGTPEEKQYFLRQGHPDNQAFHHDLYRAVGKGRMWVMEQQPGPVNWAPYNPAPLPGMARLWAWEAFAHGAETVCYFRWRQAPWAQEQMHAGLLRPDNENAPAQTEARQVADEIAGLANVGTADAPVALVFDYESAWAWDTQPQGADFDMFRLAFAAYRALRSLGVDIDIISPETSDLSDYNLVLAPGIIKLSEGFRSALKTYKGIALIGPRTDTKTEELSIPSPMGPNLSNTDVTAILAESIPPTDFIALENGGGFRHWFEHLDGDAAVYRKTEGGLPALMGNDHVRCLAGWPDDETFRSLLSDILKETGVETMDMPQGLRTRCTKTHRFVFNYAPESISWNGTEIPPAGVHWEEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PRR3</accession>
    <name>A0A1M5PRR3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Response regulator receiver domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1808</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04478.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900606.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1808"/>
    <dbReference type="EnsemblBacteria" id="SHH04478">
        <property type="protein sequence ID" value="SHH04478"/>
        <property type="gene ID" value="SAMN05444003_1808"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="2"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH04478.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="115" mass="12534" checksum="88BB401F459A785A" modified="2017-03-15" version="1">MRTLIVQSNRALGEIWRGHLVRLGAEVSIAQNGFDAIAQIEDTQFDAIVLDLMLEDGNALSVADMACFRQPEAKVIFVTNTTFFSDGSIFAHSGNARALVQSGTPPKDLAQIVYH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PTA6</accession>
    <name>A0A1M5PTA6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 7">UDP-glucose 6-dehydrogenase</fullName>
            <ecNumber evidence="4 7">1.1.1.22</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">SAMN05444003_1821</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>H2O + 2 NAD(+) + UDP-alpha-D-glucose = 3 H(+) + 2 NADH + UDP-alpha-D-glucuronate</text>
            <dbReference type="Rhea" id="RHEA:23596"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:58052"/>
            <dbReference type="ChEBI" id="CHEBI:58885"/>
            <dbReference type="EC" id="1.1.1.22"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Nucleotide-sugar biosynthesis; UDP-alpha-D-glucuronate biosynthesis; UDP-alpha-D-glucuronate from UDP-alpha-D-glucose: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.22" evidence="4 7"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04739.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900618.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1821"/>
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        <property type="protein sequence ID" value="SHH04739"/>
        <property type="gene ID" value="SAMN05444003_1821"/>
    </dbReference>
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        <property type="reaction ID" value="UER00491"/>
    </dbReference>
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        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
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        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
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        <property type="term" value="F:UDP-glucose 6-dehydrogenase activity"/>
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        <property type="project" value="UniProtKB-EC"/>
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    <dbReference type="GO" id="GO:0000271">
        <property type="term" value="P:polysaccharide biosynthetic process"/>
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        <property type="project" value="InterPro"/>
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    <dbReference type="GO" id="GO:0006065">
        <property type="term" value="P:UDP-glucuronate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017476">
        <property type="entry name" value="UDP-Glc/GDP-Man"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014027">
        <property type="entry name" value="UDP-Glc/GDP-Man_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036220">
        <property type="entry name" value="UDP-Glc/GDP-Man_DH_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014026">
        <property type="entry name" value="UDP-Glc/GDP-Man_DH_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001732">
        <property type="entry name" value="UDP-Glc/GDP-Man_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028357">
        <property type="entry name" value="UDPglc_DH_bac"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00984">
        <property type="entry name" value="UDPG_MGDP_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03720">
        <property type="entry name" value="UDPG_MGDP_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03721">
        <property type="entry name" value="UDPG_MGDP_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF500134">
        <property type="entry name" value="UDPglc_DH_bac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000124">
        <property type="entry name" value="UDPglc_GDPman_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00984">
        <property type="entry name" value="UDPG_MGDP_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52413">
        <property type="entry name" value="SSF52413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03026">
        <property type="entry name" value="NDP-sugDHase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7 10" id="KW-0520">NAD</keyword>
    <keyword evidence="5 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UDPG_MGDP_dh_C" evidence="11">
        <location>
            <begin position="317"/>
            <end position="418"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="9">
        <location>
            <begin position="152"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="9">
        <location>
            <begin position="252"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="8">
        <location>
            <position position="263"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="30"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
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        <location>
            <position position="35"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
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    <feature type="binding site" evidence="10">
        <location>
            <position position="86"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
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    <feature type="binding site" evidence="10">
        <location>
            <position position="122"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="155"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="207"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="260"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="266"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="324"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
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    <feature type="binding site" evidence="10">
        <location>
            <position position="331"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000874"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006601"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRNR" id="PIRNR000124"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="PIRSR" id="PIRSR500134-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR500134-2"/>
        </source>
    </evidence>
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        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHH04739.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="434" mass="46077" checksum="6561C4DEF79CC104" modified="2017-03-15" version="1">MKITVIGTGYVGLVSGVCFSDFGHEVVCVDKDQSKIDRLNAGEVPIYEPGLDEVMARNVSAGRLSFTVDLAVALAGTDAVFLAVGTPTRRGDGHADLTYVYQAAEEVAQGLSDYTVIVTKSTVPVGTNRKVAEIVAKANPALEFDVASNPEFLREGAAVNDFMRPDRVVVGVESDRAKEVMAEIYRPLFLREFPIVYTDLESAEIIKYAANAFLATKISFINEIAALCEAAGGDVKAVSKGMGLDGRIGKKFLHAGPGYGGSCFPKDTQALVKIGEDYDVPMSITETVVSVNDGVKARMVDKIVGLCGGDVSGQAIAVLGVTFKPETDDMREAPSLTIVPALIEAGASVRLVDPQGRHEGEALLPGAEWCEDAYAAADGASAVVLLTEWNEFRALDLKRMAAAMSAAKMADLRNIYSEEDAAKAGFKAYVSVGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PTQ5</accession>
    <name>A0A1M5PTQ5_9RHOB</name>
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        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1838</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
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        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05092.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
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        <property type="gene ID" value="SAMN05444003_1838"/>
    </dbReference>
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        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013359360" evidence="1">
        <location>
            <begin position="23"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH05092.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="109" mass="11272" checksum="7AB62F7234AF788B" modified="2017-03-15" version="1">MSFKMITLAAATVAATATAASADNYFAFGETLENSSTLELGTVRAAADGVVEIRTFNGGVPGALLGTEEVMAGANSDVRVNIGHRHNLDVVAQLVIDGQVVASKDYDLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PXS8</accession>
    <name>A0A1M5PXS8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Nitrogen regulatory protein P-II</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1909</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
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            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
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                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="1">Homotrimer.</text>
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    <dbReference type="EMBL" id="FQXB01000002">
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        <property type="gene ID" value="SAMN05444003_1909"/>
    </dbReference>
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        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
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        <property type="term" value="F:enzyme regulator activity"/>
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        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006808">
        <property type="term" value="P:regulation of nitrogen utilization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="N-reg_PII"/>
    </dbReference>
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        <property type="entry name" value="N-reg_PII-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015867">
        <property type="entry name" value="N-reg_PII/ATP_PRibTrfase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002332">
        <property type="entry name" value="N-reg_PII_urydylation_site"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00543">
        <property type="entry name" value="P-II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00340">
        <property type="entry name" value="PIIGLNB"/>
    </dbReference>
    <dbReference type="SMART" id="SM00938">
        <property type="entry name" value="P-II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54913">
        <property type="entry name" value="SSF54913"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51343">
        <property type="entry name" value="PII_GLNB_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00496">
        <property type="entry name" value="PII_GLNB_UMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="modified residue" description="O-UMP-tyrosine" evidence="4">
        <location>
            <position position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011233"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00015681"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR602187-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH06506.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="153" mass="16889" checksum="1FAAD1C368D0C36F" modified="2017-03-15" version="1">MPQLQKHRSESLSLPPYRALSPVMTWAPAWAAVRNMTRGSNVKLIIATIKPFKLEEVREALTNIGVRGMMVSEIKGFGAQSGHTEIYRGAEYAVNFVPKVKLEIVVTNEMAEQVAKTIADTAKTDKIGDGKIFTLDVESALRVRTGEMNEDAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PXU8</accession>
    <name>A0A1M5PXU8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1887</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06083.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1887"/>
    <dbReference type="EnsemblBacteria" id="SHH06083">
        <property type="protein sequence ID" value="SHH06083"/>
        <property type="gene ID" value="SAMN05444003_1887"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH06083.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="205" mass="22035" checksum="D6E4C9C8FAE6CCB6" modified="2017-03-15" version="1">MKRRAFLLGLPAAGLMGCAVSTVRAPDAVIRQAAFVGTGPKSLTLYTMKNVRSGSGAHSSLLIDASQRVMFDPAGSFSQELIPERDDVLFGMSPRLEAYYASYHARSSFFVISQKKVVSPEVAEMALGLALSNGAVSQAFCTQATSSIISRLPGFESIRTTFFPNNLSDAFGRLPGVETREYRENDSDDKSIAAAQIDAQIRAGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PY61</accession>
    <name>A0A1M5PY61_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="14 15">Dihydroxy-acid dehydratase</fullName>
            <shortName evidence="15">DAD</shortName>
            <ecNumber evidence="14 15">4.2.1.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="primary">ilvD</name>
        <name evidence="17" type="ORF">SAMN05444003_1935</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="15">Functions in the biosynthesis of branched-chain amino acids. Catalyzes the dehydration of (2R,3R)-2,3-dihydroxy-3-methylpentanoate (2,3-dihydroxy-3-methylvalerate) into 2-oxo-3-methylpentanoate (2-oxo-3-methylvalerate) and of (2R)-2,3-dihydroxy-3-methylbutanoate (2,3-dihydroxyisovalerate) into 2-oxo-3-methylbutanoate (2-oxoisovalerate), the penultimate precursor to L-isoleucine and L-valine, respectively.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>(2R)-2,3-dihydroxy-3-methylbutanoate = 3-methyl-2-oxobutanoate + H2O</text>
            <dbReference type="Rhea" id="RHEA:24809"/>
            <dbReference type="ChEBI" id="CHEBI:11851"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:49072"/>
            <dbReference type="EC" id="4.2.1.9"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="11">
            <dbReference type="Rhea" id="RHEA:24810"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="15">
            <text>(2R,3R)-2,3-dihydroxy-3-methylpentanoate = (S)-3-methyl-2-oxopentanoate + H2O</text>
            <dbReference type="Rhea" id="RHEA:27694"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:35146"/>
            <dbReference type="ChEBI" id="CHEBI:49258"/>
            <dbReference type="EC" id="4.2.1.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="15">
            <name>2Fe-2S cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49601"/>
        </cofactor>
        <text evidence="15">Binds 1 [2Fe-2S] cluster per subunit. This cluster acts as a Lewis acid cofactor.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 15">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="13 15">Amino-acid biosynthesis; L-isoleucine biosynthesis; L-isoleucine from 2-oxobutanoate: step 3/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="12 15">Amino-acid biosynthesis; L-valine biosynthesis; L-valine from pyruvate: step 3/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="15">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 15">Belongs to the IlvD/Edd family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.9" evidence="14 15"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06937.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900714.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1935"/>
    <dbReference type="EnsemblBacteria" id="SHH06937">
        <property type="protein sequence ID" value="SHH06937"/>
        <property type="gene ID" value="SAMN05444003_1935"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00047">
        <property type="reaction ID" value="UER00057"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00049">
        <property type="reaction ID" value="UER00061"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004160">
        <property type="term" value="F:dihydroxy-acid dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009099">
        <property type="term" value="P:valine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.30.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00012">
        <property type="entry name" value="IlvD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042096">
        <property type="entry name" value="Dihydro-acid_dehy_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004404">
        <property type="entry name" value="DihydroxyA_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000581">
        <property type="entry name" value="DiOHA_6PGluconate_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020558">
        <property type="entry name" value="DiOHA_6PGluconate_deHydtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037237">
        <property type="entry name" value="IlvD/EDD_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00920">
        <property type="entry name" value="ILVD_EDD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143975">
        <property type="entry name" value="SSF143975"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00110">
        <property type="entry name" value="ilvD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00886">
        <property type="entry name" value="ILVD_EDD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00887">
        <property type="entry name" value="ILVD_EDD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 15" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="3 15" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="10 15" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="7 15" id="KW-0408">Iron</keyword>
    <keyword evidence="8 15" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="9 15" id="KW-0456">Lyase</keyword>
    <keyword evidence="6 15" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 15" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="16">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="15">
        <location>
            <position position="479"/>
        </location>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="56"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="88"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="130"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" description="via carbamate group" evidence="15">
        <location>
            <position position="131"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="453"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-carboxylysine" evidence="15">
        <location>
            <position position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006486"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00029304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00029436"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00029437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00029490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="SHH06937.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="577" mass="60846" checksum="ABCFCA15F0BA7834" modified="2017-03-15" version="1">MLKGKADKSNLPSRHVTEGPSRAPHRSYYYAMGLDEQDIAQPFVGVATCWNEAAPCNIALNRQAQSVKLGVKAASGTPREFTTITVTDGIAMGHEGMRSSLASREAIADTVELTMRGHCYDAIVGLAGCDKSLPGMMMAMVRLNVPSVFIYGGSILPGRLEGKDVTVQDVFEAVGQHQAGNMSDEALQTLERVACPSAGACGGQFTANTMACVSEAIGLALLNSSGAPAPYESRDQYGVASGEAVMNLLEKNIRARDVVTRKSLENAARVVACTGGSTNAGLHLPAIAHEAGIDFDLFDVCEIFRDTPYFVDLKPGGQYVAKDLYEAGGVPIVMKELRKAGLIHEDCITASGRTMGEELDIIEGEADGRVIYPVESPITPTGGVVGLKGNLAPEGAIVKVAGMSEDDQVFTGPARVFECEEDAFEAVKARQYEEGEVLVIRNEGPAGGPGMREMLATTAALSGQGMGKKVALITDGRFSGATRGFCVGHVGPEAAHAGPIGLLKDGDMITIDAISGELSVDLSDADLQERKDNWAGAKETIYSSGALWKYSQLVGGALKGAVTHPGAKEERHIYMDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PYV7</accession>
    <name>A0A1M5PYV7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Diguanylate cyclase (GGDEF) domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1929</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06836.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1929"/>
    <dbReference type="EnsemblBacteria" id="SHH06836">
        <property type="protein sequence ID" value="SHH06836"/>
        <property type="gene ID" value="SAMN05444003_1929"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="26"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="52"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="2">
        <location>
            <begin position="114"/>
            <end position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH06836.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="238" mass="26360" checksum="9E601ACD06B33A4A" modified="2017-03-15" version="1">MSWRRFTDGLFRFLAVKGWKDGTCKIVLILAIIMLTQMAFTSAFLGNLPERTLYYALCALFVGGPWVALFFWISSYQVALQQKLSRLSRKDGLTGMNNRRTFFDLAQRSEIRAAGGVVLMIDADNFKSINDTHGHAAGDECLKAIAYRITRNLRDVDVRGRLGGEEFAVYLNCVNLAQAKAIAARLLTPIPYSLRDYDSTLTVTLSIGGVVATAEDHIDDLLSHADLALFQAKQSGKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q047</accession>
    <name>A0A1M5Q047_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">DNA-3-methyladenine glycosylase I</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1962</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07485.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900736.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1962"/>
    <dbReference type="EnsemblBacteria" id="SHH07485">
        <property type="protein sequence ID" value="SHH07485"/>
        <property type="gene ID" value="SAMN05444003_1962"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008725">
        <property type="term" value="F:DNA-3-methyladenine glycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006284">
        <property type="term" value="P:base-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005019">
        <property type="entry name" value="Adenine_glyco"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011257">
        <property type="entry name" value="DNA_glycosylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004597">
        <property type="entry name" value="Tag"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03352">
        <property type="entry name" value="Adenine_glyco"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48150">
        <property type="entry name" value="SSF48150"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00624">
        <property type="entry name" value="tag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH07485.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="187" mass="21295" checksum="3588469968D8F2B0" modified="2017-03-15" version="1">MTNRCIWAGTDPIYVDYHDTEWGVPEYDSRALWEKLILDGFQAGLSWITILKKRDYFREAFAGFDPNIVATWGEVEVEALLQNEGIIRHRGKIEATIGNAQAWQRIESDQGFDKFLWNYVDGKPLQPNRKTKADVHAQTELSVQISKDLKKAGFKFCGPTIVYAFMQATGMVNDHVVDCHCHAKLSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q0H5</accession>
    <name>A0A1M5Q0H5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Serine protease SohB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1970</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07654.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900742.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1970"/>
    <dbReference type="EnsemblBacteria" id="SHH07654">
        <property type="protein sequence ID" value="SHH07654"/>
        <property type="gene ID" value="SAMN05444003_1970"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd07023">
        <property type="entry name" value="S49_Sppa_N_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002142">
        <property type="entry name" value="Peptidase_S49"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01343">
        <property type="entry name" value="Peptidase_S49"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_S49" evidence="1">
        <location>
            <begin position="79"/>
            <end position="212"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01343"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH07654.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="264" mass="28536" checksum="02B7E8601AD7C73A" modified="2017-03-15" version="1">MKNILPFMKSDPLVNVVRLQGAITNSGSGLDDPSLAPVIEKAFRKGKPQAVALQINCPGGSPVQSSLIAARIQRLSAETEVPVYAFVEDVAASGGYWLACAADEIYVDQGSIVGSIGVISAGFGFQDAIERYGVERRVHTAGKSKSMLDPFKPLAPADVKRLKGWLEDLHAIFIDHVKARRGDKLSDNPDLFTGEVFIGQKGVDQGLADGIEHLVPFMKAQFGDKVRFRRFGQRKSLLQRVGARVVGDAIGSLEERAAFARFGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q365</accession>
    <name>A0A1M5Q365_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Adenylate kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2028</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08717.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900906.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2028"/>
    <dbReference type="EnsemblBacteria" id="SHH08717">
        <property type="protein sequence ID" value="SHH08717"/>
        <property type="gene ID" value="SAMN05444003_2028"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH08717.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="172" mass="19971" checksum="430895C0E4487D86" modified="2017-03-15" version="1">MQRVMIVGGLGLGKSTLACLLGKKTGLPVFHMDHLHWKPGWEPRDDEEKRLMALEIIAQDRWVFEGGMSSTYAERLARSDTMIWLDLPFALRFWRVIKRTVRDHGKHRPDIAEGCYEGFHKETLPFWWFILRTRKKNRAVLEKMAIDAGAAKLVHLQTRKDVDEYLAKLDAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q3N6</accession>
    <name>A0A1M5Q3N6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">YggT family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2013</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the YggT family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08431.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900773.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2013"/>
    <dbReference type="EnsemblBacteria" id="SHH08431">
        <property type="protein sequence ID" value="SHH08431"/>
        <property type="gene ID" value="SAMN05444003_2013"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003425">
        <property type="entry name" value="CCB3/YggT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02325">
        <property type="entry name" value="YGGT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="7"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="74"/>
            <end position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH08431.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="95" mass="10968" checksum="33B5DA1E39E8C01F" modified="2017-03-15" version="1">MASIFDILMLLLGVARMFIFVHFIMSWLINFDVLNVRQPLVGQIWYGLQRILEPIYRPIRNILPDMGGIDLSPIVALIGIEIIRIILINNVALFY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q785</accession>
    <name>A0A1M5Q785_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2082</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09780.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900837.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2082"/>
    <dbReference type="EnsemblBacteria" id="SHH09780">
        <property type="protein sequence ID" value="SHH09780"/>
        <property type="gene ID" value="SAMN05444003_2082"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008610">
        <property type="term" value="P:lipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006694">
        <property type="entry name" value="Fatty_acid_hydroxylase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04116">
        <property type="entry name" value="FA_hydroxylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="45"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="74"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="130"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="166"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="domain" description="Fatty acid hydroxylase" evidence="2">
        <location>
            <begin position="174"/>
            <end position="302"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH09780.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="323" mass="37839" checksum="EFAD438D89A070B9" modified="2017-03-15" version="1">MPTNKDWNYHPDLPLQDPSIFSRPTDAKFLSGWFARNWLTLSERVLMLILAVAAYYTLYPSLASAQSFAPGWMLQILIANYILVIAVAGGLHWYFYIKRGQGKDLKFDHRDQTRNNRNFKFSDQVKDNMFWTLASGVPQLSAFQIVTYWLMANGYAPTITFASNPIWFVLAIILLPIWSAFHFYWVHRFLHVPFMYTRFHALHHRNINIGPWSGFSMHPVEHLLYLSTLCIHWIVASHPIHVIYHVIYQGPGAAMTHTGYEDLLVKDKRKLALGTFYHTLHHRYFECNYGNQEMPWDRWFGTFHDGTAEGTAETRARKKRMYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q853</accession>
    <name>A0A1M5Q853_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glutathione S-transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2098</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH10086.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900851.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2098"/>
    <dbReference type="EnsemblBacteria" id="SHH10086">
        <property type="protein sequence ID" value="SHH10086"/>
        <property type="gene ID" value="SAMN05444003_2098"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006749">
        <property type="term" value="P:glutathione metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010987">
        <property type="entry name" value="Glutathione-S-Trfase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036282">
        <property type="entry name" value="Glutathione-S-Trfase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040079">
        <property type="entry name" value="Glutathione_S-Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004045">
        <property type="entry name" value="Glutathione_S-Trfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004046">
        <property type="entry name" value="GST_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14497">
        <property type="entry name" value="GST_C_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13417">
        <property type="entry name" value="GST_N_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00019">
        <property type="entry name" value="Glutathione_Transferase_(cytos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47616">
        <property type="entry name" value="SSF47616"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50405">
        <property type="entry name" value="GST_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50404">
        <property type="entry name" value="GST_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GST N-terminal" evidence="1">
        <location>
            <begin position="1"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="domain" description="GST C-terminal" evidence="2">
        <location>
            <begin position="83"/>
            <end position="215"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH10086.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="221" mass="25499" checksum="4F92036BCA2994C7" modified="2017-03-15" version="1">MNRLYHYPISPFSRKVRLSLAEKKIEVELVEERYWEQDADFLLRNPAGKVPVLRMGSQTLSDSTAICEYLEDAYPTPALLPRGAEDRYEVRRLVAWFDDKFHQEVTSKLLGERMFRKVMGTGYPDSANVKAGAKAIKYHLDYMARLLDQRRWLAGNEMSLADFAAAAHLSCLDYISDVDWNRSEVVKDWYAKIKSRPAFRSLLADQVPGFPQPAHYADLDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QID2</accession>
    <name>A0A1M5QID2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2131</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH13698.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900936.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2131"/>
    <dbReference type="EnsemblBacteria" id="SHH13698">
        <property type="protein sequence ID" value="SHH13698"/>
        <property type="gene ID" value="SAMN05444003_2131"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH13698.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="146" mass="16818" checksum="AF175489B249FA08" modified="2017-03-15" version="1">MLTALFDIDGTLAKIDHRRPLVVGKNPDWKTFNSLMGDDLPNEPIVDLYRALWESNNYELILVSGRGEEFRSVTETWLTWNLIPFGKLLMRPHGDFRSDVEIKQDILDGLLSEGKTISFVVDDRDSVVEMWRRNNITCLQCAEGDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QP14</accession>
    <name>A0A1M5QP14_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">ATP-dependent protease ATPase subunit HslU</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Unfoldase HslU</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">hslU</name>
        <name evidence="8" type="ORF">SAMN05444003_2237</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">A double ring-shaped homohexamer of HslV is capped on each side by a ring-shaped HslU homohexamer. The assembly of the HslU/HslV complex is dependent on binding of ATP.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the ClpX chaperone family. HslU subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15845.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901105.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2237"/>
    <dbReference type="EnsemblBacteria" id="SHH15845">
        <property type="protein sequence ID" value="SHH15845"/>
        <property type="gene ID" value="SAMN05444003_2237"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009376">
        <property type="term" value="C:HslUV protease complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036402">
        <property type="term" value="F:proteasome-activating activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043335">
        <property type="term" value="P:protein unfolding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00249">
        <property type="entry name" value="HslU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019489">
        <property type="entry name" value="Clp_ATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004491">
        <property type="entry name" value="HslU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48102:SF3">
        <property type="entry name" value="PTHR48102:SF3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07724">
        <property type="entry name" value="AAA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01086">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00390">
        <property type="entry name" value="hslU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 5" id="KW-0143">Chaperone</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-0645">Protease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="6">
        <location>
            <begin position="49"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="domain" description="ClpB_D2-small" evidence="7">
        <location>
            <begin position="328"/>
            <end position="424"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="18"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="60"/>
            <end position="65"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="249"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="314"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="386"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00249"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM01086"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH15845.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="436" mass="48227" checksum="E170BE147D2D0778" modified="2017-03-15" version="1">MTDLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLGEDLRDEVYPKNILMIGPTGVGKTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVEAAIVETREHMREDVKSKALEAAEDRVISAVAGTDARDSTREMFRRKLKSGELDNTVIELELTDTSNPLRGFEIPGQPSAGMGGMMNLGDLFGKAMGGRTVKKRMTVAESYEALLAEEADKLLDDETVTKAALEAVEQNGIVFLDEIDKVCARADARGADVSREGVQRDLLPLIEGTTVSTKHGPIKTDHILFIASGAFHVAKPSDLLPELQGRLPIRVELRALTEEDFVRILTETDNALTLQYSALMKTEDVTVSFDESGIATLAKIAAEVNESVENIGARRLYTVIERVFEDLSFTAPDRSGDEIVIDAAFVEEHLGELARSTDVSRYVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QRC6</accession>
    <name>A0A1M5QRC6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Choloylglycine hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2267</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase C59 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16421.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901144.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2267"/>
    <dbReference type="EnsemblBacteria" id="SHH16421">
        <property type="protein sequence ID" value="SHH16421"/>
        <property type="gene ID" value="SAMN05444003_2267"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029132">
        <property type="entry name" value="CBAH/NAAA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02275">
        <property type="entry name" value="CBAH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CBAH" evidence="3">
        <location>
            <begin position="2"/>
            <end position="312"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006625"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02275"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH16421.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="346" mass="37969" checksum="C77364328CC9B5AE" modified="2017-03-15" version="1">MCTGIILKSKDGATVPARTMEFGFDIFSNIFAIPAGTKIETLGLNSEKRGFTFETKFGFLGANGLDMPIVFDGVNTEGLYFGAFYFAGDAVFEELSDENIGRAVSSEEMGNWILGQFSTVEEVKEALPTISVVGTYVTEIDGFAPFHYAVTDASGTSIVIEYTSNGLRIFDNTVSAITNNPSYDWHLTNLRNYIGLQSFNLGQIKVGDENILPFGQGSGLFGLPGDHSSPSRFVRAVAFANTLLPSHTADEAIFKAFHMLNAFDIPKGSIKEEHGDALLTDYTIWTSAADTKNVKYYYKTYLTQSVEMVDVIKAIESLSQPTSLKMETGFSVTDRTADFEWQDSLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QRK7</accession>
    <name>A0A1M5QRK7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">4-coumarate--CoA ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2272</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16511.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901152.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2272"/>
    <dbReference type="EnsemblBacteria" id="SHH16511">
        <property type="protein sequence ID" value="SHH16511"/>
        <property type="gene ID" value="SAMN05444003_2272"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0436">Ligase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="2">
        <location>
            <begin position="34"/>
            <end position="422"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="3">
        <location>
            <begin position="431"/>
            <end position="505"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="326"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="326"/>
            <end position="344"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH16511.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="518" mass="56267" checksum="764C81C539FE754C" modified="2017-03-15" version="1">MIIYKSKYPDIPTVDLTVTERVFEGLKSRLSDVVLTDGLDGRTFTASDFMHHVKCLAGGLVERGYSTGKTVAIMAPNSPEYCFIFHAVAWAGGTITTLNPTYTDQEVKHQVKDSGADMLIVFAHFADIAKAALKEMPDVTLYSIGDVEGLPSLDTLYGAVLDAQVPVDLDTHSVVAPYSSGTTGLPKGVRLSHRNLVMNIDQTAAGVDFRQGEAAAAFLPFFHIYGMNVLMNMHLACGGALVTMPRFDLEMFLSITQDHKARRMWVVPPVALALAKHPMVDQFDLSNIDQVFSGAAPMGSDLSDAVSARLNCQMVQGFGMTELSPVSHATPLTEPRSGSSGLALPNTECRIVDPDTGADQSASMTGELWIRGPQVMIEYLNNEAATASALTDDGWLKTGDLAYIDDDGFMFIVDRLKELIKFKGFQVAPAELEAVLVSHDGIQDAAVIGKPDDEAGELPIAFIIAADPELTEQGVYNYMSEMLASYKQLHKVNFVTEIPKSPSGKILRRLLRDQIANR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QT44</accession>
    <name>A0A1M5QT44_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2284</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16763.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901169.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2284"/>
    <dbReference type="EnsemblBacteria" id="SHH16763">
        <property type="protein sequence ID" value="SHH16763"/>
        <property type="gene ID" value="SAMN05444003_2284"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="13"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="46"/>
            <end position="53"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH16763.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="273" mass="30245" checksum="7E31259F6CA29FA6" modified="2017-03-15" version="1">MLDSGEQSVETLLEVNNIEVIYNHVILVLKGVSLTVPKGGITALLGGNGAGKTTTLKAISNLLHSERGEVTKGSIEYRGEPVADSSPSELVKKGVIQVMEGRHCFEHLTIEENLMTGAYTRRDGGAAADLEMVYNYFPRLKERRKSQAGYTSGGEQQMCAIGRALMSRPETILLDEPSMGLAPQLVEEIFGIVKNLNEKEGVSFLLAEQNTNVALRFAHHGYILESGRVVMEGPAAELRENPDVKEFYLGMSDEGRKSFRDVRSYRRRKRWLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QUG6</accession>
    <name>A0A1M5QUG6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Aminomethyltransferase</fullName>
            <ecNumber evidence="3">2.1.2.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Glycine cleavage system T protein</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_2304</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(6S)-5,6,7,8-tetrahydrofolate + (R)-N(6)-(S(8)-aminomethyldihydrolipoyl)-L-lysyl-[protein] = (6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + (R)-N(6)-dihydrolipoyl-L-lysyl-[protein] + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:16945"/>
            <dbReference type="Rhea" id="RHEA-COMP:10475"/>
            <dbReference type="Rhea" id="RHEA-COMP:10492"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="ChEBI" id="CHEBI:83100"/>
            <dbReference type="ChEBI" id="CHEBI:83143"/>
            <dbReference type="EC" id="2.1.2.10"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the GcvT family.</text>
    </comment>
    <dbReference type="EC" id="2.1.2.10" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17193.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901498.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2304"/>
    <dbReference type="EnsemblBacteria" id="SHH17193">
        <property type="protein sequence ID" value="SHH17193"/>
        <property type="gene ID" value="SAMN05444003_2304"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004047">
        <property type="term" value="F:aminomethyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006546">
        <property type="term" value="P:glycine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006223">
        <property type="entry name" value="GCS_T"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028896">
        <property type="entry name" value="GCST/YgfZ/DmdA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013977">
        <property type="entry name" value="GCV_T_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006222">
        <property type="entry name" value="GCV_T_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029043">
        <property type="entry name" value="GcvT/YgfZ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027266">
        <property type="entry name" value="TrmE/GcvT_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43757">
        <property type="entry name" value="PTHR43757"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01571">
        <property type="entry name" value="GCV_T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08669">
        <property type="entry name" value="GCV_T_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101790">
        <property type="entry name" value="SSF101790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00528">
        <property type="entry name" value="gcvT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="9" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GCV_T" evidence="7">
        <location>
            <begin position="9"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="domain" description="GCV_T_C" evidence="8">
        <location>
            <begin position="288"/>
            <end position="367"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012616"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00031395"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF08669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH17193.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="374" mass="39830" checksum="E3A65381DF21CD88" modified="2017-03-15" version="1">MSDLLRTPLYDLHVGLGAKMVPFAGYEMPVQYALGVMKEHVHTRTKAGLFDVSHMGQVRIDGAPYADVAAAVETLIPVNAMGLGEGRQRYGLFTNEDGGIEDDLMFANRGDHMLMVVNAACKDADIARLKAALEPVLTVTPITDRALIALQGPLAEVALATLNPIVADMKFMDVATVELVGVDCWISRSGYTGEDGYEISVPEAQAVALTEALLAHDDVEAIGLGARDSLRLEAGLCLYGHDIDSGTSPVEAGLTWAIQKVRRAGGDRAGGFPGADRILQEFDDGASRKRVGLLPEGRAPMREGVPLFADETSPECIGQITSGGFGPTVERPVAMGYVSVEHSNIGSVVFGELRGKRLPLTVASLPFTPANFKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QYM1</accession>
    <name>A0A1M5QYM1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Phosphomannomutase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">SAMN05444003_2385</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the phosphohexose mutase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18870.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901336.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2385"/>
    <dbReference type="EnsemblBacteria" id="SHH18870">
        <property type="protein sequence ID" value="SHH18870"/>
        <property type="gene ID" value="SAMN05444003_2385"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016868">
        <property type="term" value="F:intramolecular transferase activity, phosphotransferases"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005844">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016055">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-I/II/III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005845">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005846">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005843">
        <property type="entry name" value="A-D-PHexomutase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036900">
        <property type="entry name" value="A-D-PHexomutase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016066">
        <property type="entry name" value="A-D-PHexomutase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02878">
        <property type="entry name" value="PGM_PMM_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02879">
        <property type="entry name" value="PGM_PMM_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02880">
        <property type="entry name" value="PGM_PMM_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00408">
        <property type="entry name" value="PGM_PMM_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53738">
        <property type="entry name" value="SSF53738"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55957">
        <property type="entry name" value="SSF55957"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00710">
        <property type="entry name" value="PGM_PMM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0413">Isomerase</keyword>
    <keyword evidence="5 7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PGM_PMM_I" evidence="9">
        <location>
            <begin position="4"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="domain" description="PGM_PMM_II" evidence="10">
        <location>
            <begin position="146"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="domain" description="PGM_PMM_III" evidence="11">
        <location>
            <begin position="248"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="domain" description="PGM_PMM_IV" evidence="8">
        <location>
            <begin position="389"/>
            <end position="447"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU004326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF02880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHH18870.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="454" mass="48201" checksum="0CB1E88B6B461F8E" modified="2017-03-15" version="1">MPPKFGTSGLRGLVTELTDDLIRDHVVAFAKSCDIGNCVYVGQDLRDSSPRVATATMSALRDFGVDVVDCGAVVTPALAMAAMANGSAAIMVTGSHIPADRNGIKFYIPDGEITKAHEAAILANLGSALDEHMEMGKQTAFNAEPAFVDRYLHGFGKTALAGRRIGVYAHSTVGRDLLQTILASLGADVTELGRSVTFIPVDTEAVDPETRSQLREWAAGSDLDAIVSMDGDGDRPLLTDETGEVISGDILGQLTAQFLNARHVVTPVSSNTGVKQLGFESVLHTKIGSPFVIAGMEDVDGPVVGYEANGGFLLGFEATGSAGSIDPLMTRDSVLPLVSVLVAGQGRPLSALMEHQPQRFTAADRLQNIERETSLALIERIKNDPAWFADHFNASIVDTDETDGFRMTFSDQTIIHVRPSGNAPELRIYVEAESAVTAGKLLDAAYSTIKALSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R1Q2</accession>
    <name>A0A1M5R1Q2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">VPLPA-CTERM protein sorting domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2456</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH20292.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901435.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH20292">
        <property type="protein sequence ID" value="SHH20292"/>
        <property type="gene ID" value="SAMN05444003_2456"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012454772" evidence="1">
        <location>
            <begin position="28"/>
            <end position="248"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH20292.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="248" mass="26391" checksum="7A15AAADB5D7E7B0" modified="2017-03-15" version="1">MRRFDQPKTRGIGFGLLLVLSSTNVSAATFSVNDIAGIWQNSLMESGGSASGEGTESMRWGNPVGSTGKSGYDFGAATTPLNVEADELFVLGTFNHLNFPVTGDFLDSADLEVSISGSVETVDFGFNSVFQFDHFETPNSASPCAVESTVQPCPDLVTLLNPQDLTQTVMVGDLEYTLEISGFVLDAGDPSSFLTHFVTLEGENNKSYLVGRFSEPLPITPVPLPASAWLLLAAFGLLGGSRQIFKSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RAW5</accession>
    <name>A0A1M5RAW5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2470</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23176.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2470"/>
    <dbReference type="EnsemblBacteria" id="SHH23176">
        <property type="protein sequence ID" value="SHH23176"/>
        <property type="gene ID" value="SAMN05444003_2470"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="87"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH23176.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="232" mass="25296" checksum="7CBAF5EA5BA78ECD" modified="2017-03-15" version="1">MTTTSATESREIGNRTVVTGIAAIVAILLVAAVLLFINLPDANAFDARVEQLFVENDTLTGNAEIKLLEILAQSGTAFSDTLSSYRFVIFVLLVFATALLIAAIAFLVMLIAMNRRLSRIERQGIEVNSLTISRDQKAVYLNDFEFKLTDAAMETLSVLAEARMDDEMMTGAEIEGVISGRNAADCDEAAGATRIKRLRDTLGNQMVSELLVKNVARKGYVLAIDKDVIKMV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5REP5</accession>
    <name>A0A1M5REP5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Predicted secreted hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2548</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24795.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901658.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2548"/>
    <dbReference type="EnsemblBacteria" id="SHH24795">
        <property type="protein sequence ID" value="SHH24795"/>
        <property type="gene ID" value="SAMN05444003_2548"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.370.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023374">
        <property type="entry name" value="AttH-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010791">
        <property type="entry name" value="AttH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07143">
        <property type="entry name" value="CrtC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013382216" evidence="1">
        <location>
            <begin position="19"/>
            <end position="341"/>
        </location>
    </feature>
    <feature type="domain" description="CrtC" evidence="2">
        <location>
            <begin position="54"/>
            <end position="215"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH24795.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="341" mass="37915" checksum="2EE6FA6D846BB75C" modified="2017-03-15" version="1">MNVRLLLFLLIWPTSIWAQGFAGLGTDAEGFSVPERGYVFDFPADHGAHPDYRIEWWYLTANMQDAEGRDYGLQWTLFRSALIPDEIDGQIFMGHAAVTTPDDHYVTERLARGSLGHAGVTAEPFEAWIDEWQMVGDMEVLSLKAGSDEFSYELELRNEGPLIFHGDAGYSVKSAEGQASHYYSLPYLALSGTLALPEGEVEVTGEAWLDREWSSQPLSDTQTGWDWFSLSFESGDKMMGFALRQTDGSVYTYATWIALEGETQAYPDGALSATPLETSQTSGAEVPTKWRVELPDRGVDVEVQAINPNAWMTTSVPYWEGPVTISGSHKGRGYLEMTGYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RF34</accession>
    <name>A0A1M5RF34_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Two component transcriptional regulator, winged helix family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2557</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24967.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901672.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2557"/>
    <dbReference type="EnsemblBacteria" id="SHH24967">
        <property type="protein sequence ID" value="SHH24967"/>
        <property type="gene ID" value="SAMN05444003_2557"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="3">
        <location>
            <begin position="6"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="4">
        <location>
            <begin position="129"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="2">
        <location>
            <begin position="129"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH24967.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="228" mass="25854" checksum="04A030F413E4D337" modified="2017-03-15" version="1">MAQLKKILLVDDDDDLREALGEQLLMTEDFDVFEAADGTEAMVKAKEQLYDLMILDVGLPDTDGRELCRLMRKQGVKCPIVMLTAQDSDADTIYGLDAGANDYVSKPFKFPVLLARLRSQLRTHEQSEDAVFQLGPYTFKPAQKMLVTEEDKKVRLTEKETNILKFLYRSTEGVVARDVLLHEVWGYNAGVTTHTLETHIYRLRQKIEPDPSNARLLVTESGGYRLIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RFB4</accession>
    <name>A0A1M5RFB4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA recombination protein RmuC homolog</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2532</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Involved in DNA recombination.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the RmuC family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901637.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2532"/>
    <dbReference type="EnsemblBacteria" id="SHH24463">
        <property type="protein sequence ID" value="SHH24463"/>
        <property type="gene ID" value="SAMN05444003_2532"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003798">
        <property type="entry name" value="DNA_recombination_RmuC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30563">
        <property type="entry name" value="PTHR30563"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02646">
        <property type="entry name" value="RmuC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="15"/>
            <end position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00021840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH24463.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="390" mass="42538" checksum="C3B999792EE9F5EB" modified="2017-03-15" version="1">MITLGGTTYELSDPIVLLALGAAVVLLLVVILLIVSVRRAGQSALMTQHLASQMGGLGSRVNELSNGQQQLFGGLNSVSEAQAQQQAQTLQLMEQRLAQVNEAMGQNLSASAQRTAQSLGELQQRLQTIDKAQENITKLSGDVLSLQDILSNKQTRGAFGEIQLNDIVSKALPSDSYALQATLSNGKRADCLIHLPNPPGPIVIDSKFPLEAYEALRNATNDWEVNEAAKLMRSSVKHHIKAISEKYILEGETADGALMFLPSEAVYAELHANFPELIRDGFAARVWIVSPTTCMATLNTMRAILKDARMREQAGAIRKELSLLYGDVDRLGARVENLDRHFSQAAKDITEIKISAEKAGKRARRLDNFDFEELAKDDDPKVVPLASPKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RIA3</accession>
    <name>A0A1M5RIA3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Predicted lactoylglutathione lyase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2608</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26035.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2608"/>
    <dbReference type="EnsemblBacteria" id="SHH26035">
        <property type="protein sequence ID" value="SHH26035"/>
        <property type="gene ID" value="SAMN05444003_2608"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="30"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH26035.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="167" mass="17928" checksum="55CEE893CBFE440A" modified="2017-03-15" version="1">MIRRRSGLKPKVLSGAAIRRPAPVLGTVTMIVYVTVGVDDIEAAERFYSAFLPALGYGLEYYHGDLCYALPVVPGQTPTHPEFYVKRPFNGASASAGNGTMIAFEASSQQQVRDLHAAALNAGGQDEGQPGFRDDYGANFFVSYLRDPQGNKIAIFSSNPNEPGRGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RJU4</accession>
    <name>A0A1M5RJU4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized conserved protein, LabA/DUF88 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2631</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26557.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901786.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2631"/>
    <dbReference type="EnsemblBacteria" id="SHH26557">
        <property type="protein sequence ID" value="SHH26557"/>
        <property type="gene ID" value="SAMN05444003_2631"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004540">
        <property type="term" value="F:ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021139">
        <property type="entry name" value="NYN_MARF1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01936">
        <property type="entry name" value="NYN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NYN" evidence="1">
        <location>
            <begin position="7"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH26557.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="190" mass="22002" checksum="053C605E6C917844" modified="2017-03-15" version="1">MFYRDERLALFIDGSNLYAAAKSLGFDIDYKLLRQEFMRRGKLLRAFYYTALLENDEYSPIRPLVDWLHYNGFSMVTKPAKEYTDSMGRRKVKGNMDIELTVNAMELAPHIDHAVIFSGDGDFRPLIESLQRQGVRVSVVSTIRSQPPMVADELRRQCDNFIELDELRDVVGRPPREPREEPAAELENVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RL93</accession>
    <name>A0A1M5RL93_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2654</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH27094.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2654"/>
    <dbReference type="EnsemblBacteria" id="SHH27094">
        <property type="protein sequence ID" value="SHH27094"/>
        <property type="gene ID" value="SAMN05444003_2654"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd07986">
        <property type="entry name" value="LPLAT_ACT14924-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045746">
        <property type="entry name" value="ACT14924-like_Acyltransf_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19576">
        <property type="entry name" value="Acyltransf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Acyltransf_2" evidence="2">
        <location>
            <begin position="89"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="16"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="16"/>
            <end position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF19576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH27094.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="312" mass="34706" checksum="BFA2968009C8958A" modified="2017-03-15" version="1">MTNLAKTTSLNRYFTSGPHLSESISQNETAPEAEQTRGRIYNRDALTYSNTFENPFKRQTIRTIEWLTGKVSIVRMITEFERRPAVKGHGFWRACLNVMRIELHTPLEQLENIPATGPVIVVANHPHGMVDGMILAELIGKRRRDYRILTRSVLTGIDPEAAAFLIPVPFPHEEDAQQKFLEMRKQAMAHLKAGGVVALFPAGGVAASETMYGPAVDAEWNVFTAKMIRTSGATVVPCFFPGQNSRAYQMANQISATLRQGLLIHEIVKACGKPQAPIVGSAIDHSEVETRLSNPREFMAWLRDHTLSLGKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RN92</accession>
    <name>A0A1M5RN92_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 7 8">Elongation factor Tu</fullName>
            <shortName evidence="7">EF-Tu</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">tuf</name>
        <name evidence="10" type="ORF">SAMN05444003_2666</name>
        <name evidence="11" type="ORF">SAMN05444003_2687</name>
    </gene>
    <organism evidence="10 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH27383.1"/>
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    <dbReference type="EnsemblBacteria" id="SHH27383">
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        <property type="gene ID" value="SAMN05444003_2687"/>
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        <property type="entry name" value="Transl_elong_EFTu/EF1A_bac/org"/>
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        <property type="entry name" value="Transl_elong_EFTu/EF1A_C"/>
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    <dbReference type="Pfam" id="PF00009">
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    </dbReference>
    <dbReference type="Pfam" id="PF03144">
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        <property type="entry name" value="GTP_EFTU_D3"/>
        <property type="match status" value="1"/>
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    <dbReference type="PRINTS" id="PR00315">
        <property type="entry name" value="ELONGATNFCT"/>
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        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
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    </dbReference>
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    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 7 10" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="5 7" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="2 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 7" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tr-type G" evidence="9">
        <location>
            <begin position="10"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="19"/>
            <end position="26"/>
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        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
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        <location>
            <begin position="76"/>
            <end position="80"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
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        <location>
            <begin position="131"/>
            <end position="134"/>
        </location>
        <ligand>
            <name>GTP</name>
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            <dbReference type="ARBA" id="ARBA00007249"/>
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        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
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        <source>
            <dbReference type="ARBA" id="ARBA00022768"/>
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            <dbReference type="ARBA" id="ARBA00022917"/>
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            <dbReference type="ARBA" id="ARBA00023134"/>
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    </evidence>
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            <dbReference type="PROSITE" id="PS51722"/>
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        <source>
            <dbReference type="EMBL" id="SHH27383.1"/>
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        <source>
            <dbReference type="EMBL" id="SHH27842.1"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="391" mass="42828" checksum="89911B811F4E3E88" modified="2017-03-15" version="1">MAKEKFERNKPHVNIGTIGHVDHGKTTLTAAITKYFGDFQAYDQIDGAPEEKARGITISTAHVEYETADRHYAHVDCPGHADYVKNMITGAAQMDGAILVVNAADGPMPQTREHILLGRQVGIPYIVVYMNKVDQVDDEELLELVEMEIRELLNEYEYPGDDIPIIKGSALAAMEGRDNEIGEDSIKALMEAVDSYIPTPARAVDQPFLMPIEDVFSISGRGTVVTGRVERGVINVGDEIEIVGIRDTSKTTCTGVEMFRKLLDSGEAGDNIGALLRGVDRDGVERGQVLVKPGSVQPHTKFEAEAYILTKEEGGRHTPFFANYRPQFYFRTTDVTGTVNLPAGTEMVMPGDNLKFDVELIAPIAMEEGLRFAIREGGRTVGAGVVSKITE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RNK6</accession>
    <name>A0A1M5RNK6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">L-lactate dehydrogenase (Cytochrome)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2688</name>
    </gene>
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        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
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            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
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                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
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    <comment type="similarity">
        <text evidence="3">Belongs to the FMN-dependent alpha-hydroxy acid dehydrogenase family.</text>
    </comment>
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        <property type="project" value="UniProtKB-KW"/>
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    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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    </dbReference>
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        <property type="entry name" value="FMN_HYDROXY_ACID_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0288">FMN</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FMN hydroxy acid dehydrogenase" evidence="6">
        <location>
            <begin position="1"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="4">
        <location>
            <position position="247"/>
        </location>
    </feature>
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        <location>
            <position position="5"/>
        </location>
        <ligand>
            <name>glyoxylate</name>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
        </ligand>
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            <end position="60"/>
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            <name>FMN</name>
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        </location>
        <ligand>
            <name>FMN</name>
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        </ligand>
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        <ligand>
            <name>glyoxylate</name>
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            <position position="136"/>
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        <ligand>
            <name>FMN</name>
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        </ligand>
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        <location>
            <position position="145"/>
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        <ligand>
            <name>glyoxylate</name>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
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        <ligand>
            <name>FMN</name>
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            <name>FMN</name>
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        <ligand>
            <name>glyoxylate</name>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
        </ligand>
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        <ligand>
            <name>glyoxylate</name>
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        <ligand>
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            <end position="302"/>
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            <name>FMN</name>
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        </ligand>
    </feature>
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        <source>
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        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00024042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
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        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000138-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51349"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH27864.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="346" mass="37708" checksum="C8426DDCE0BF22A7" modified="2017-03-15" version="1">MVFDYIDGAAGYETGAARHRAALDAVTLPTRILRDVSQRDLSTKLFGVETAVPFGIAPMGMCNLSGPGADLMLARLAAKYRVPHGVSTVASTPMEKILEVSEGHAWFQLYFSGDGVGTFKLVERAKTAGYQTLVLTVDVPEVGRRPRELRHGFKMPFRIGPKQFADFALHPVWSISSLLAGKPDMANFHMDGFEFDRTESRAKADWDTLRRLRDAWPGNLVVKGVLNVEDAVALKAADVDAVQVSSHGARQLESVPTPIDVVRPMREALGPDFPLLFDSGLRSGEDVLKVMSEGADFAFFGRPLQFAIAAAGEKGLAALWDVLTDEMSIAMAQMGVTKVWDVRRSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RV37</accession>
    <name>A0A1M5RV37_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Monosaccharide ABC transporter ATP-binding protein, CUT2 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2713</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30165.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2713"/>
    <dbReference type="EnsemblBacteria" id="SHH30165">
        <property type="protein sequence ID" value="SHH30165"/>
        <property type="gene ID" value="SAMN05444003_2713"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="7"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="39"/>
            <end position="46"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH30165.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="258" mass="28412" checksum="C0D4B1F0F302F377" modified="2017-03-15" version="1">MSNDIVLETRGLTKHYGGVQALNDANFILKKGEHVAIMGDNGAGKSTFVRQITGVEQRTSGDVIFDGQPVNFTGPIDAREAGIETVFQTLALADHLDVPDNLFLGREKTKLDWLGPFRLLDYKSMRQDTLDALERTGVKIPNIRNTIERMSGGQRQCVAIARTASFASKLTIMDEPTAALGVQETAQVENIIRTLKEQGEPLILVSHNMRQVMDLVDRIIVFRRGRIVANLRKEETDGQDIVAYITGAKTGAEYEGAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RX23</accession>
    <name>A0A1M5RX23_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">4-carboxymuconolactone decarboxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2741</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30785.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902007.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2741"/>
    <dbReference type="EnsemblBacteria" id="SHH30785">
        <property type="protein sequence ID" value="SHH30785"/>
        <property type="gene ID" value="SAMN05444003_2741"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051920">
        <property type="term" value="F:peroxiredoxin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029032">
        <property type="entry name" value="AhpD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003779">
        <property type="entry name" value="CMD-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02627">
        <property type="entry name" value="CMD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69118">
        <property type="entry name" value="SSF69118"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CMD" evidence="1">
        <location>
            <begin position="40"/>
            <end position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02627"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH30785.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="131" mass="14749" checksum="50FADF4463B57574" modified="2017-03-15" version="1">MADLFDEDLFLKGLEQRKGTLGAEYVEKNLAAADEFTRPFQEAMTAWCWGFGWGDDVIDPKTRSMMNLTMLGALERLHEWEVHCRGALNNGVSTEEIRAIIHVIAIYCGVPLGLECFRVARKVLTEEGLLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RYT1</accession>
    <name>A0A1M5RYT1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="13">ATP synthase subunit b</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">ATP synthase F(0) sector subunit b</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">ATPase subunit I</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">F-type ATPase subunit b</fullName>
            <shortName evidence="13">F-ATPase subunit b</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="primary">atpF</name>
        <name evidence="16" type="ORF">SAMN05444003_2763</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0). The b'-subunit is a diverged and duplicated form of b found in plants and photosynthetic bacteria.</text>
    </comment>
    <comment type="function">
        <text evidence="11 13">F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="13">F-type ATPases have 2 components, F(1) - the catalytic core - and F(0) - the membrane proton channel. F(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). F(0) has three main subunits: a(1), b(2) and c(10-14). The alpha and beta chains form an alternating ring which encloses part of the gamma chain. F(1) is attached to F(0) by a central stalk formed by the gamma and epsilon chains, while a peripheral stalk is formed by the delta and b chains.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="13">Cell membrane</location>
            <topology evidence="13">Single-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 13 14">Belongs to the ATPase B chain family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31334.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902040.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2763"/>
    <dbReference type="EnsemblBacteria" id="SHH31334">
        <property type="protein sequence ID" value="SHH31334"/>
        <property type="gene ID" value="SAMN05444003_2763"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045263">
        <property type="term" value="C:proton-transporting ATP synthase complex, coupling factor F(o)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01398">
        <property type="entry name" value="ATP_synth_b_bprime"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002146">
        <property type="entry name" value="ATP_synth_b/b'su_bac/chlpt"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00430">
        <property type="entry name" value="ATP-synt_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 13" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="13" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 13 14" id="KW-0138">CF(0)</keyword>
    <keyword evidence="15" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6 13 14" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="8 13 14" id="KW-0406">Ion transport</keyword>
    <keyword evidence="9 13" id="KW-0472">Membrane</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 13 14" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 13" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 13 14" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="35"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="15">
        <location>
            <begin position="68"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022547"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00025198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00025614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01398"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU003848"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="SHH31334.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="182" mass="19175" checksum="823D3F7B0644520C" modified="2017-03-15" version="1">MATETIDATVGACVDAGGYALGMPQLCADWIPNQVFWLILCLIAIYFVMSRIALPRIGAVLAERSGTITNDLAAAEELKQKAVEAEDAYNKALADARAEAGRIVAEAKAEIQTQLDAEMAKADKKIMEKTAESEKAIAEIRASAKESVKTVAKDAAKEIVAAMGGKADAKSITSAVTARMKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S2L3</accession>
    <name>A0A1M5S2L3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Regulatory protein, luxR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2822</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32686.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902124.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2822"/>
    <dbReference type="EnsemblBacteria" id="SHH32686">
        <property type="protein sequence ID" value="SHH32686"/>
        <property type="gene ID" value="SAMN05444003_2822"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH luxR-type" evidence="2">
        <location>
            <begin position="205"/>
            <end position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00421"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH32686.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="587" mass="65292" checksum="EADD7F21E1C22A71" modified="2017-03-15" version="1">MTKPQLQDRRALASDADWDDIISRVYDVALDPSRYETLLDKWETTMGPMRSHGLEAPSLDDASILGHFDRAAEFLERGDLATGPSEIELLMTQFDTMAAVIIDRDLSILELNDAAERVLRSSKGMGLSRIALDEMDRAALARQCARMMPSDGPQTSVFRVRAADEGHFIVFHMKRVMLSTDAPVVIAVTSDLSWPVGFGDILHSAFGLSKAEVEVVRLLVECCSLKEIAETRGRSLETVRGQLKTILSKTETRTQVELVRLTMSMMDIATLTTETNPGPRVISEGFEALDPVPFQTVDAPDGRSLDYLILGDPNGSPILYLHMDFGFMRWPASAEAEAKAMGLKIIAPVRGGFGHSSALPKKGDFGKLVAQDLITVLDAENVPPCPVISLGADHLFAIELDLMRPGQVTAVIAAGGVFPFTRPQQFERMHKWHRFIQAGARYTPQVLPFLVKAGFHLAKRGGKRAFVHSVFGDSKADIDTFEDPEVFEAMITGSEICLSEQHNAHESFARQSLYEHGKVPPELIKQSEGRFPFISFNGTQDPSVHPDTIEEYAKDYPWIDFRVYEDSGQLMFFRHWREVVATAKKYC</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S676</accession>
    <name>A0A1M5S676_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, LacI family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2875</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33991.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902209.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2875"/>
    <dbReference type="EnsemblBacteria" id="SHH33991">
        <property type="protein sequence ID" value="SHH33991"/>
        <property type="gene ID" value="SAMN05444003_2875"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01392">
        <property type="entry name" value="HTH_LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000843">
        <property type="entry name" value="HTH_LacI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046335">
        <property type="entry name" value="LacI/GalR-like_sensor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00356">
        <property type="entry name" value="LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13377">
        <property type="entry name" value="Peripla_BP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00036">
        <property type="entry name" value="HTHLACI"/>
    </dbReference>
    <dbReference type="SMART" id="SM00354">
        <property type="entry name" value="HTH_LACI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50932">
        <property type="entry name" value="HTH_LACI_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH lacI-type" evidence="4">
        <location>
            <begin position="8"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH33991.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="340" mass="37058" checksum="2C8F08C125A878F7" modified="2017-03-15" version="1">MNRQPSIPTLEDVAQAAGVSTATVSRCLNEKEKVSKSTLSKVMEAVENLGYTPNFNARAMAARRSNTIGAIIPTMENAIFARGIQAFQVALHEKGYNLLVSSNVYRPELETELIKSLVSRGADGLLLIGHSRDSETYQYLERRGIPSVLAWSMQPGQTHTCVGFDNRASMHPLADKVIELGHRHIGVISGIVEGNDRAQSRLEAIKDSMTAHGLTVDPDMIIQTFYDLDNGSIAFEQLMQKVPTPTAVMCGNDVLAAGAIAKAREMGIKVPEDVSITGFDDIELAKHVYPALTTVHVPHREMGRRAADLLVDLIEDRGSASIIQLDTEVVMRDSLSPPKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SE85</accession>
    <name>A0A1M5SE85_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 8 10">FAD:protein FMN transferase</fullName>
            <ecNumber evidence="2 8 10">2.7.1.180</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Flavin transferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_2926</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8 10">
            <text>FAD + L-threonyl-[protein] = AMP + FMN-L-threonyl-[protein] + H(+)</text>
            <dbReference type="Rhea" id="RHEA:36847"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11061"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
            <dbReference type="ChEBI" id="CHEBI:74257"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.7.1.180"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="9">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="9">Magnesium. Can also use manganese.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cell inner membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8 10">Belongs to the ApbE family.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.180" evidence="2 8 10"/>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2926"/>
    <dbReference type="EnsemblBacteria" id="SHH36917">
        <property type="protein sequence ID" value="SHH36917"/>
        <property type="gene ID" value="SAMN05444003_2926"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017013">
        <property type="term" value="P:protein flavinylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.520.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024932">
        <property type="entry name" value="ApbE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003374">
        <property type="entry name" value="ApbE-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30040">
        <property type="entry name" value="PTHR30040"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02424">
        <property type="entry name" value="ApbE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006268">
        <property type="entry name" value="ApbE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143631">
        <property type="entry name" value="SSF143631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 10" id="KW-0274">FAD</keyword>
    <keyword evidence="4 8 10" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="10 11" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="7 8 9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="10" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 8 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8 10" id="KW-0808">Transferase</keyword>
    <feature type="binding site" evidence="9">
        <location>
            <position position="218"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="332"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="336"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001219"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011955"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00016337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRNR" id="PIRNR006268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR006268-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU363002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH36917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="384" mass="41257" checksum="7973785AFC59D63D" modified="2017-03-15" version="1">MEVGETSFYSLLVFFSEMSIKHLKNARRFDYQTPDFRKKGHVVSTPITFTRRTFLVMPLALAACNPRAQVMEFLGLSMGTSYKVVAIDHNGSLERQPIEAAISSALADVNASMSNWDSGSEISRFNAQSGTSEVNFSPDLAEVMSAAADVNAVSAGRFDTTIGPLIELWGFGANGEKSVPTDALLQQAMARSGHENTLHIDNGSAQKKRSDAQVYLAGIGKGFGADKVGRALESFGITDYLVEIGGDLYAAGRNPDGLPWQIGIETPNPTNRGILNVVGVSNMGMASSGDYRNYFEVDGQRFSHLIDPTTGRPVDHTTASATVLAENAMLADAWSTAMLILGREQGIAIADRQGIAVQFVERDPAAANLQFKTETSAAFDQLTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SJA9</accession>
    <name>A0A1M5SJA9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3001</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902441.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3001"/>
    <dbReference type="EnsemblBacteria" id="SHH38569">
        <property type="protein sequence ID" value="SHH38569"/>
        <property type="gene ID" value="SAMN05444003_3001"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021796">
        <property type="entry name" value="DUF3365"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11845">
        <property type="entry name" value="DUF3365"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH38569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="277" mass="29851" checksum="F9AA6290F3BCEEDA" modified="2017-03-15" version="1">MSTFRLVLAGCIFCLAIYLFVSAPPPLEESGQRQTAARAVEVEHVFRAVNSVNEAARQIYTSRIVGPGKQVGLGFGEDWAEPDVEKGPLPALFLRLAAARLEAKPTRLSLNLGSDEPINKSNLFDAAQMEASGIVKSSREPVFSQIEEVGVVGMFPDIASAQPCVTCHNEHADSPKVDWELGDVMGATTWTYPDAVLGADEYLATTEATFEAVAEAYTQYLDKVSGFAEPIEIGSDWPDQGKLALPDLETFLTEVRAAASASIVDELILQSEAEVAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SJU4</accession>
    <name>A0A1M5SJU4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2999</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38528.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2999"/>
    <dbReference type="EnsemblBacteria" id="SHH38528">
        <property type="protein sequence ID" value="SHH38528"/>
        <property type="gene ID" value="SAMN05444003_2999"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="129"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH38528.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="359" mass="38833" checksum="40A4442BFE023A63" modified="2017-03-15" version="1">MRSTPRKSTVQSCQSAVRSAKKNRRMTALDQYERLESDGLWREKTGAQRRDVLVSFGHATLVISDSADRPLTHWSLPAVTRLNEGERPALFSPAPDAEETLEIADDTMIDAIETVRRGLLNARSTSGRLRFAISASFAALVVGLAVFWFPNALREQTLAVVPQSKRAEMGAIILGHLQSTLGQRCTSPRGQDALGAMSNRLFGPSAQAQIVVLPDGLEEAVALPGNIIVLDKSRVESAKEPESVAGYALAAFLDAEEKDALGPIIDQAGLRPTLQLLTTGDLPPESLEAYAISLTNSPQLIELRASILEGFQSQNVDITPLFADLESRGRLVPNQTNEADNQPVISDSQWIALNGICDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SL12</accession>
    <name>A0A1M5SL12_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="10">ATP-binding cassette, subfamily B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_3027</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH39169.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902476.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3027"/>
    <dbReference type="EnsemblBacteria" id="SHH39169">
        <property type="protein sequence ID" value="SHH39169"/>
        <property type="gene ID" value="SAMN05444003_3027"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011918">
        <property type="entry name" value="ABC_MsbA_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02204">
        <property type="entry name" value="MsbA_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="33"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="74"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="141"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="174"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="256"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="284"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="36"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="352"/>
            <end position="588"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="387"/>
            <end position="394"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH39169.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="597" mass="64549" checksum="471BF6D625DEE757" modified="2017-03-15" version="1">MADAQIQSEDDREASKQVGALKQLWPFMRPYKLMIALATIALVTTAGLSLILPLAVRRVIDNFNEESAALLQQYFLAALGVAGLLAVGTALRYYLVTRLGERVVADIRKGVFTRMIGMSPSFFEKLKTGEVLSRITTDTTLILSVIGSSVSVALRNVLILVGGIALMLWTSIKMSLLVLWPIPVIIFPIIFLGRRVRRLSKENQDWIATSSGDASEQLLSAQTVQAFTHEDLSRLKFDDVTEKSFVAARRRIATRAVLTAIVIFVAFSGVVGFLWMGANDVRSGVITIGELVQFMIYTIMVAGSVAALTEIWSELQRAAGATERLVELLGAEDDVSDPTQPVKVPSALSGEITFDDVTFSYPSRPSVSALDGVSLHIQPGETVALVGPSGAGKTTIIQLVQRFYDPQSGVIKLDGIDLKDMERQAFRKHIALVPQDPVIFADTARENIRFGRPEASNAEVETAAKAAAAHDFLTALPEGYDSHVGERGVMLSGGQKQRIAIARAILRDAPILLLDEATSALDAESENAVQKAVDQLAQNRTTLIVAHRLATVKKADRIVVFEGGQIVAQGTHDSLVSEGGLYARLAKLQFTAGLAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5STX1</accession>
    <name>A0A1M5STX1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Methyltransferase</fullName>
            <ecNumber evidence="4">2.1.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_3108</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the trimethylamine methyltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.-" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41954.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902661.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3108"/>
    <dbReference type="EnsemblBacteria" id="SHH41954">
        <property type="protein sequence ID" value="SHH41954"/>
        <property type="gene ID" value="SAMN05444003_3108"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015948">
        <property type="term" value="P:methanogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.480">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038601">
        <property type="entry name" value="MttB-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010426">
        <property type="entry name" value="MTTB_MeTrfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06253">
        <property type="entry name" value="MTTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037567">
        <property type="entry name" value="MTTB_MeTrfase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4 6" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR037567"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH41954.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="516" mass="56363" checksum="4EFA60A6698E6EF9" modified="2017-03-15" version="1">MANDQSPRGRRGRRRDSAMPSPALAQPPFRQLKRSYPATSLISDDQVEHIHQASLNLLSETGLDVLHEGARAVMKKAGADVRDGEERVRFDPDLINNCIATVPSEFTLHARNARHNVTMGGNNVVFNMMASAPNCSDTDRGRRAGNQEDYRNFLRLAQMHNVLHVTGGYPVEPVDIHASIRHLDCIQDYITLTDKAYCIYSLGEERVADAIEMTRIAHGLTHDQMRDRACMFSIINTNSPLQLDIPMMQGVMALSEMGQPVVITPFTLAGAMAPITIAGAVTLQNAEALAGVALSQMVRPGAPVMYGGFTSNVDMKTGSPAFGTPEYMKAQHIGGQLARRYGIPYRSSNVCAANTVDAQAAYEAVFSLWGAINGGANMLMHGAGWLEGGLCCSYEKVILDIDLLQMVSEFLQPVSTSPDDLALEAINEVGPAGHFFGTDHTQARYRDAFYSPILSDWRNFENWEEAGSPIAIEKANAEWKTRLGAYEAPALDPAIREELDAFVTKRKAEGGAATDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SUP0</accession>
    <name>A0A1M5SUP0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_3126</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the UPF0718 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42232.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902683.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3126"/>
    <dbReference type="EnsemblBacteria" id="SHH42232">
        <property type="protein sequence ID" value="SHH42232"/>
        <property type="gene ID" value="SAMN05444003_3126"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005524">
        <property type="entry name" value="DUF318"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03773">
        <property type="entry name" value="ArsP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="20"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="50"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="79"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="109"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="152"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="228"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="261"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="297"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="325"/>
            <end position="346"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006386"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH42232.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="349" mass="36185" checksum="DFDC592156F5087D" modified="2017-03-15" version="1">MSTSSDTSVQPGTALLQFLSSQRVWVASGLILLVLAVFDTEQAIESTVFASTALIGIAPFLIFSIAIAAYANATGADNLIAKAFVGAPAMMIIMGALAGGLSPFCSCGVIPLVAALLTMGVPLSAVMAFWLASPIMDPSMFFLTSGVLGFEFAVAKTFAAIGLGLFGGTVIHLLSRGGHLSDPLRDGVGNGGCGGAKMRAPKPVVWSFWVEKERRRTFAKVSLDTTLFLAKWLELAFILESLMLAWVPAETVTKALGGSGIGPILTATFVGVPAYLNGYAALPLVSGLIEQGMSLGAGLAFLVAGGVTSIPAAMAVWALAKPRVFALYIGFSLSGAFMAGLFYQLWTIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SW87</accession>
    <name>A0A1M5SW87_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7">30S ribosomal protein S11</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rpsK</name>
        <name evidence="9" type="ORF">SAMN05444003_3156</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Part of the 30S ribosomal subunit. Interacts with proteins S7 and S18. Binds to IF-3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 8">Belongs to the universal ribosomal protein uS11 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42769.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902733.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3156"/>
    <dbReference type="EnsemblBacteria" id="SHH42769">
        <property type="protein sequence ID" value="SHH42769"/>
        <property type="gene ID" value="SAMN05444003_3156"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01310">
        <property type="entry name" value="Ribosomal_S11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001971">
        <property type="entry name" value="Ribosomal_S11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019981">
        <property type="entry name" value="Ribosomal_S11_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018102">
        <property type="entry name" value="Ribosomal_S11_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036967">
        <property type="entry name" value="Ribosomal_S11_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11759">
        <property type="entry name" value="PTHR11759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00411">
        <property type="entry name" value="Ribosomal_S11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002131">
        <property type="entry name" value="Ribosomal_S11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03632">
        <property type="entry name" value="uS11_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00054">
        <property type="entry name" value="RIBOSOMAL_S11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7 8" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="5 7 8" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 7" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00015692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003629"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH42769.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="130" mass="13790" checksum="A70E0A1AB1126FD7" modified="2017-03-15" version="1">MARDTRRGGKRKVSKNIAAGVAHVNSSFNNTKILISDVQGNAISWSSAGTMGFKGSRKSTPYAAQMAAEDAGKKAQEHGVKTLEVEVQGPGSGRESALRALAAVGFNITSIRDVTPMAHNGCRPPKRRRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SXR2</accession>
    <name>A0A1M5SXR2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Polyhydroxybutyrate depolymerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_3182</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH43304.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902775.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3182"/>
    <dbReference type="EnsemblBacteria" id="SHH43304">
        <property type="protein sequence ID" value="SHH43304"/>
        <property type="gene ID" value="SAMN05444003_3182"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030600">
        <property type="term" value="F:feruloyl esterase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043595">
        <property type="entry name" value="FaeB/C/D"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003140">
        <property type="entry name" value="PLipase/COase/thioEstase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38050">
        <property type="entry name" value="PTHR38050"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02230">
        <property type="entry name" value="Abhydrolase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012206401" evidence="3">
        <location>
            <begin position="22"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="domain" description="Abhydrolase_2" evidence="4">
        <location>
            <begin position="116"/>
            <end position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02230"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH43304.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="263" mass="28939" checksum="EE2951E099ECAC8C" modified="2017-03-15" version="1">MIRFFCLLGFISLGLTTSASACGGLEACSVGDRSYHVRAPDNWDGETPLPVLLHFHGWGRQGDLIMTHRRIAINEVAENVLLIAPNGLRGSWFFWQPNSPDSDFARAAIDDAAARFPIDRDKIFVSGYSWGANMAWRFACDAGDGLAGLLAVAGTLPQTMDCDGTPNEVRQVYGFDDQVLPFPYGPNGETTYPVALWREKLGCGEGTAEGPWAARSFLTFERTSWDCANGHVVLDVHPGGHFIPHDWIPLQVEQILERTGRDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T3A9</accession>
    <name>A0A1M5T3A9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3216</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45215.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902861.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3216"/>
    <dbReference type="EnsemblBacteria" id="SHH45215">
        <property type="protein sequence ID" value="SHH45215"/>
        <property type="gene ID" value="SAMN05444003_3216"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="4"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH45215.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="305" mass="33202" checksum="B1FC3520792E67DE" modified="2017-03-15" version="1">MANISLKQLRYFEALAEHAHFGRAADACAISQPALSMQIKELEESLGTDLVERGAKQVRLTRFGAEIAPNVREILKSVEELQNLARAEQEAVAGQFRIGIIPTIAPYLLPSIVGQLLAAYPDLDMHLRETQTATLLSDVEDGSLDAAILALPVSEPHLVEAPLFEEAFVLVRTPEDAALPVPSAEVLGKMRLLLLEEGHCFRDQALTFCGLRTGLPRDSLEGSSLSTLVQMVALGLGVTLIPELAVPIETRSADVSIARFEDRVPMRQVGMVWRKGHPLSAQFQEIGEVVQRVGLDALAQMRSTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T643</accession>
    <name>A0A1M5T643_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Zn-dependent dipeptidase, dipeptidase homolog</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3260</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46225.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902930.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3260"/>
    <dbReference type="EnsemblBacteria" id="SHH46225">
        <property type="protein sequence ID" value="SHH46225"/>
        <property type="gene ID" value="SAMN05444003_3260"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070573">
        <property type="term" value="F:metallodipeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008257">
        <property type="entry name" value="Pept_M19"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10443">
        <property type="entry name" value="PTHR10443"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01244">
        <property type="entry name" value="Peptidase_M19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51365">
        <property type="entry name" value="RENAL_DIPEPTIDASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH46225.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="324" mass="37136" checksum="99AC3CB92DF0B537" modified="2017-03-15" version="1">MRIDGLQYANWSEKIFRQLREGQVDAIHVTIAYHENFRETVLNFEKWNRWFEQYPDLIMKGQCASDIDVARETSRTAVFFGFQNPSPIEDDIGLVEILHTLGARFMQLTYNNQSLLATGCYEVEDTGLTRMGKQVVKEMNRVGLVVDMSHSADRSTIEAAEYSDRPIAITHANPHRWHPARRNKSDDVIRAVTQNCGMLGFSVYPHHLKDKTDCTLESFCEMIARTADKFGVDHLGIGTDLCQDQPDSVVEWMRVGRWTKKIDYGEGSASDAGFPPMPEWFQDNRHFDNIEDGLRQVGMNEAEVAGVMGQNWYRFFSENFGPHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T767</accession>
    <name>A0A1M5T767_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Urease accessory protein UreF</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">ureF</name>
        <name evidence="4" type="ORF">SAMN05444003_3275</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">UreD, UreF and UreG form a complex that acts as a GTP-hydrolysis-dependent molecular chaperone, activating the urease apoprotein by helping to assemble the nickel containing metallocenter of UreC. The UreE protein probably delivers the nickel.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the UreF family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46591.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3275"/>
    <dbReference type="EnsemblBacteria" id="SHH46591">
        <property type="protein sequence ID" value="SHH46591"/>
        <property type="gene ID" value="SAMN05444003_3275"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016151">
        <property type="term" value="F:nickel cation binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.4190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01385">
        <property type="entry name" value="UreF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002639">
        <property type="entry name" value="UreF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038277">
        <property type="entry name" value="UreF_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01730">
        <property type="entry name" value="UreF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF009467">
        <property type="entry name" value="Ureas_acces_UreF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0143">Chaperone</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 3" id="KW-0996">Nickel insertion</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022988"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01385"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH46591.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="231" mass="25493" checksum="4895DA81C3DD6CA2" modified="2017-03-15" version="1">MATVARIVMNMGIQRIMTTDPKLLTLVHWLSPSYPIGSFAWSHGIEAAIAQGWIEDDQSLKEWLTDLVQQGSIRNDAILISLAYGTTDYDTVRNLNATARALAASKERIREAERQGTAFAKTTREVWKLNLPDLMLPVALGYAARLQDLDGQSLTAIYAQSVLSNLVLAAQRLMALGQTSAQTILLELTPLCAELSQDVAHSDLDDIYSNCFLSDVASMVHETQQPRLFQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T8D4</accession>
    <name>A0A1M5T8D4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3291</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46958.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3291"/>
    <dbReference type="EnsemblBacteria" id="SHH46958">
        <property type="protein sequence ID" value="SHH46958"/>
        <property type="gene ID" value="SAMN05444003_3291"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="21"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH46958.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="51" mass="5874" checksum="B3C6E4128B400CA6" modified="2017-03-15" version="1" fragment="single">MSKKRRVFDIDLPQDDTPESFPAGKVEEKERRGPMAAAITENADSLRERQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TA21</accession>
    <name>A0A1M5TA21_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3292</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000009">
        <property type="protein sequence ID" value="SHH47470.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902994.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH47470">
        <property type="protein sequence ID" value="SHH47470"/>
        <property type="gene ID" value="SAMN05444003_3292"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH47470.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="102" mass="10814" checksum="523D9AFE0CC21515" modified="2017-03-15" version="1">MTVSEVWGVEGFDPQFVGPETNANQVEHLGISSLLQGVASVPGAVLNEAEAFEVFVKGEDPDEANADRALNGVVREVLLPRIEGEPEEIEAALGEALGPMTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L287</accession>
    <name>A0A1M5L287_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0058</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59147.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898396.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0058"/>
    <dbReference type="EnsemblBacteria" id="SHG59147">
        <property type="protein sequence ID" value="SHG59147"/>
        <property type="gene ID" value="SAMN05444003_0058"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007801">
        <property type="entry name" value="UPF0276"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42194">
        <property type="entry name" value="PTHR42194"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05114">
        <property type="entry name" value="DUF692"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG59147.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="284" mass="31136" checksum="C88375C9FE6DA47E" modified="2017-03-15" version="1">MLDATSFNALPNKPGVGHKPQHYKDILGNPGPLGWLEIHAENYMGDGGRPIAQLRHLSEQFPISVHGVGLSIGGEGDLDKDHLARLKHLIGWLNPASFSEHLAWSTHDSHFLNDLLPLPYNMKTVKRVADHIDEVQEVVGRKMLLENPSSYLAFAESTMSETDFLKEIVSRTGCGLLLDVNNVFVSATNLNTSPQAYIDDFALDAVGEIHLGGHDEDEDETGAPLLIDSHGKAVVDPVWALLDYTLERSGRKPLLIEWDTDVPEWPVLAAEVARAHAALELVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L345</accession>
    <name>A0A1M5L345_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Poly(3-hydroxybutyrate) depolymerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0069</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59360.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900326.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0069"/>
    <dbReference type="EnsemblBacteria" id="SHG59360">
        <property type="protein sequence ID" value="SHG59360"/>
        <property type="gene ID" value="SAMN05444003_0069"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009656">
        <property type="entry name" value="PHB_depo_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010915">
        <property type="entry name" value="PHB_depoly_PhaZ"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06850">
        <property type="entry name" value="PHB_depo_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF020818">
        <property type="entry name" value="PHB_depoly_PhaZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01849">
        <property type="entry name" value="PHB_depoly_PhaZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PHB_depo_C" evidence="1">
        <location>
            <begin position="207"/>
            <end position="408"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF06850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG59360.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="424" mass="47518" checksum="F90EEC64BBC0549F" modified="2017-03-15" version="1">MKYMMTYDLMETARNTNQWLGATAHAFASYPFMSMMPNPAMDWVKAWGEVTERTFARMVVKPDWNIPSFTDEQGKDRVVSVNTVVERPFGDLIHFHASNRKGKKPKLLLVAPMSGHYATLLRKTVISLLPDFEVYVTDWHNARDIPVSAGKFDVEDYTLYLVDFMKELGPDTHVMAVCQPVPLTLAATAYLAEEDPKAQPRSLTLVGGPVDPDANPTEVTDFGHSVTMGQLEQMMIQRVGFKYDGVGRMVYPGLLQLASFISMNSEMHSTAFRDQIIRAAKGETSDHDRHNTFYDEYLAVMDMTSEFYLSTVERIFKNREIAKNEFVVNGRKVDFSKITNVAVKIVEGEEDDISAPGQCLAALDLLTGLPDEKKAAHLEPGAGHYGIFAGKSWRNNIRPLFLEFVAANSGDQKPRKSAKVVSIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L4W3</accession>
    <name>A0A1M5L4W3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Protein HflC</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0103</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">HflC and HflK could regulate a protease.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the band 7/mec-2 family. HflC subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60026.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898459.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0103"/>
    <dbReference type="EnsemblBacteria" id="SHG60026">
        <property type="protein sequence ID" value="SHG60026"/>
        <property type="gene ID" value="SAMN05444003_0103"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052547">
        <property type="term" value="P:regulation of peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03405">
        <property type="entry name" value="SPFH_HflC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.479.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001107">
        <property type="entry name" value="Band_7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036013">
        <property type="entry name" value="Band_7/SPFH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010200">
        <property type="entry name" value="HflC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42911">
        <property type="entry name" value="PTHR42911"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01145">
        <property type="entry name" value="Band_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005651">
        <property type="entry name" value="HflC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00244">
        <property type="entry name" value="PHB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117892">
        <property type="entry name" value="SSF117892"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0645">Protease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PHB" evidence="3">
        <location>
            <begin position="20"/>
            <end position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR005651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG60026.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="292" mass="32686" checksum="EE7D6B1112CDEA30" modified="2017-03-15" version="1">MRKTAFLLPAAVVVLLLAASSVFIVDEREKALVLQFGRIITVKEEPGLGFKVPLIQDVVRYDDRILSRDLDPIEVTPSDDRRLVVDAFARYRISDVTQFREAVGAGGEEVAARRLDSILRAETREVLGTVSSNDILSTDREALMLQIRNGAIAEAESLGLQVIDVRLKRTDLPPENLNATYERMKAEREREAADEIARGNEAAQRVRAQADRTVVELVSDAQRQAEITRGEADAERNRIFAESFGANPEFFDFYRSMTAYQRSLQPGNSTMVLSPENEFFDYLKSDTGPATE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L9N5</accession>
    <name>A0A1M5L9N5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase</fullName>
            <ecNumber evidence="10">2.4.1.227</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">murG</name>
        <name evidence="13" type="ORF">SAMN05444003_0175</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc-(pentapeptide)GlcNAc (lipid intermediate II).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>di-trans-octa-cis-undecaprenyl diphospho-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine + UDP-N-acetyl-alpha-D-glucosamine = di-trans-octa-cis-undecaprenyl diphospho-[N-acetyl-alpha-D-glucosaminyl-(1-&gt;4)]-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine + H(+) + UDP</text>
            <dbReference type="Rhea" id="RHEA:31227"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
            <dbReference type="ChEBI" id="CHEBI:58223"/>
            <dbReference type="ChEBI" id="CHEBI:61387"/>
            <dbReference type="ChEBI" id="CHEBI:61388"/>
            <dbReference type="EC" id="2.4.1.227"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="10">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cell membrane</location>
            <topology evidence="10">Peripheral membrane protein</topology>
            <orientation evidence="10">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the glycosyltransferase 28 family. MurG subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.227" evidence="10"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61635.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898542.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0175"/>
    <dbReference type="EnsemblBacteria" id="SHG61635">
        <property type="protein sequence ID" value="SHG61635"/>
        <property type="gene ID" value="SAMN05444003_0175"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051991">
        <property type="term" value="F:UDP-N-acetyl-D-glucosamine:N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol 4-beta-N-acetylglucosaminlytransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050511">
        <property type="term" value="F:undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030259">
        <property type="term" value="P:lipid glycosylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00033">
        <property type="entry name" value="MurG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006009">
        <property type="entry name" value="GlcNAc_MurG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007235">
        <property type="entry name" value="Glyco_trans_28_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004276">
        <property type="entry name" value="GlycoTrans_28_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04101">
        <property type="entry name" value="Glyco_tran_28_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03033">
        <property type="entry name" value="Glyco_transf_28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 10" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="2 10" id="KW-0132">Cell division</keyword>
    <keyword evidence="1 10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 10" id="KW-0133">Cell shape</keyword>
    <keyword evidence="9 10" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="3 10" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="7 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 10" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 10 13" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_transf_28" evidence="11">
        <location>
            <begin position="7"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_tran_28_C" evidence="12">
        <location>
            <begin position="186"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="region of interest" description="UDP-N-acetyl-alpha-D-glucosamine binding" evidence="10">
        <location>
            <begin position="13"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="125"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="165"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="192"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="293"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF03033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF04101"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHG61635.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="365" mass="38312" checksum="2C2FAB09DAD6B1C0" modified="2017-03-15" version="1">MSGPLLVIAAGGTGGHMFPAQALAEAMLAKGWRVRLSTDARGARYTGGFPDAVEVQVVGSATFARGGILQKTMVPFRILGGSLAAILRMRREQPAVVVGFGGYPAIPAMVAAWVLRKPRMIHEQNGVLGRVNQIFATRVDKVACGTWPTELPEGVEGEDVGNPVRAAVLARAGAGYIPPGDYPMSILMMGGSQGARILSDVVPAALAAVPEDLRQNIRISHQAREEDVGRVEVAYAQTGISAEVQTFFTDVPDRLSEAQLLIARSGASTVADATVIGRPSIFVPLAQAIRDEQTANARAMVEAGAAVLMPESTFTPQALAETIERILGNPKAATQMAQAALACGKPDATERLVALVETLAEGEQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LDC9</accession>
    <name>A0A1M5LDC9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">TIGR01244 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0230</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63027.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898639.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0230"/>
    <dbReference type="EnsemblBacteria" id="SHG63027">
        <property type="protein sequence ID" value="SHG63027"/>
        <property type="gene ID" value="SAMN05444003_0230"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005939">
        <property type="entry name" value="BLH_phosphatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029021">
        <property type="entry name" value="Prot-tyrosine_phosphatase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04273">
        <property type="entry name" value="DUF442"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01244">
        <property type="entry name" value="TIGR01244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF442" evidence="1">
        <location>
            <begin position="2"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG63027.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="141" mass="15136" checksum="6FF417C0B8331637" modified="2017-03-15" version="1">MDIRRLCDSYAVSPQINPEDVTAIKEAGFGTIICNRPDMEIPPSHHAEVVKAAAENVGLNFVKIPLTHQTMSVELAKEQRAIIDASDEPVFAYCASGTRCSIVWALGQAEDTSADDILNATSAAGYDLGGMRPTLDSLKKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LDL5</accession>
    <name>A0A1M5LDL5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Sulf_transp domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_0232</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0394 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63076.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898643.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0232"/>
    <dbReference type="EnsemblBacteria" id="SHG63076">
        <property type="protein sequence ID" value="SHG63076"/>
        <property type="gene ID" value="SAMN05444003_0232"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007272">
        <property type="entry name" value="Sulf_transp"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04143">
        <property type="entry name" value="Sulf_transp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="52"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="75"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="domain" description="Sulf_transp" evidence="8">
        <location>
            <begin position="47"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF04143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG63076.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="122" mass="12147" checksum="97E38AC8626669AF" modified="2017-03-15" version="1">MPIDWINGLIGGGLIGLAAAIYLLVNGRIMGASGIVGGLVDGSGHHAWKERGALLLGLFFVPAIIALAQGGASTFATSNLAILIIAGLLVGLGTRIANGCTSGHGVCGISRLSLRGIVATVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LN78</accession>
    <name>A0A1M5LN78_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Threonine/homoserine/homoserine lactone efflux protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_0385</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66416.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898859.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0385"/>
    <dbReference type="EnsemblBacteria" id="SHG66416">
        <property type="protein sequence ID" value="SHG66416"/>
        <property type="gene ID" value="SAMN05444003_0385"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001123">
        <property type="entry name" value="LeuE-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30086">
        <property type="entry name" value="PTHR30086"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01810">
        <property type="entry name" value="LysE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="40"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="71"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="117"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="146"/>
            <end position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG66416.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="205" mass="21819" checksum="3A687F116C412AE5" modified="2017-03-15" version="1">MTFALFLTIVGIHLAAAISPGPAFFVSIRMAATDGFQNAAALALGFGLGAAIWATAAMTGVAILFELVPALFTGLKLVGAAFLIFLALMMWRDASEPLQIASEDQPRKTKPIGAARLGLLTFLSNPKSAVFFGAVFIGLVPPETSFVWQAAIVAVIFFNETLWYLLVARLFSTARARHAYARAKSGIDRMFGFFLAGLGAKIALT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LRP4</accession>
    <name>A0A1M5LRP4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0412</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67033.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898898.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0412"/>
    <dbReference type="EnsemblBacteria" id="SHG67033">
        <property type="protein sequence ID" value="SHG67033"/>
        <property type="gene ID" value="SAMN05444003_0412"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032783">
        <property type="entry name" value="AraC_lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018062">
        <property type="entry name" value="HTH_AraC-typ_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12852">
        <property type="entry name" value="Cupin_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00041">
        <property type="entry name" value="HTH_ARAC_FAMILY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="4">
        <location>
            <begin position="218"/>
            <end position="316"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG67033.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="316" mass="35554" checksum="BF421AAA4B67EBFC" modified="2017-03-15" version="1">MTHPTTSPPQALDPLSETLHAMHMRGTLYCRAELRAPWGIEIPNLGGLMGFMVVTSGRIWFEMEGTDGRWLETGSLTLVPHGLPHQLRSATDTRVVPLHNLPVTQITDHYEILQYGQVGDLTRVTYGVVRFDNQIAQRLIAQLPNAIFHHRWDQETDGWMDSTMRYVSREAASLRPGGETVLTRLADILVIQAIRAWLDTAPDARKGWLAAMRDQKIGRALAYIHQQPELRWSVSTLAEKAALSRSAFSARFTEMVGQSAMTYLTKWRLSLAISLLDETDLSLGEIAMRVGYGSEPAFGRAFKRNFGVPPGYRRRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LTA5</accession>
    <name>A0A1M5LTA5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Holin of 3TMs, for gene-transfer release</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0470</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68372.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898983.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0470"/>
    <dbReference type="EnsemblBacteria" id="SHG68372">
        <property type="protein sequence ID" value="SHG68372"/>
        <property type="gene ID" value="SAMN05444003_0470"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021497">
        <property type="entry name" value="GTA_holin_3TM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11351">
        <property type="entry name" value="GTA_holin_3TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="74"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="106"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="142"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG68372.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="164" mass="17925" checksum="5629ADBDEE45080C" modified="2017-03-15" version="1">MGLVGRLMTMIFGDGRNVIAETAEVFRVNSEQADQSATDVTKATLAQFAAEFAHPRKGLFDRVIDGINRLPRPMLALGTIALFVTAMFDPVWFASRMEGVALVPEPLWWLMGAIVSFYFGARHQAKGQDFSAVAETLSASELLKPKEPQAPDNPALADWEAKNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M1P9</accession>
    <name>A0A1M5M1P9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0595</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG71110.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899149.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG71110">
        <property type="protein sequence ID" value="SHG71110"/>
        <property type="gene ID" value="SAMN05444003_0595"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012499958" evidence="1">
        <location>
            <begin position="19"/>
            <end position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG71110.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="205" mass="22119" checksum="14F50D1422EFD98A" modified="2017-03-15" version="1">MRLSLAFLISTFFPICVAADYKSVDSAATSAFDRMPPVVVVDVIAGNCGANAGVNPKAAYCTSQNTIYLSELASNLPETPYLIAHLYGHAAQVRHGVADVAFAAIRSRPNEEAALRGMVTRQVECLAGMYMALAGLNDLSLMDWLNDEPFTGSHWSRNPLSRGPQVSIGLAARDEWFQIGQKAVHPSACSVIEMNAELLVNAYKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M7I7</accession>
    <name>A0A1M5M7I7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Disulfide bond formation protein DsbB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_0679</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899281.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0679"/>
    <dbReference type="EnsemblBacteria" id="SHG73220">
        <property type="protein sequence ID" value="SHG73220"/>
        <property type="gene ID" value="SAMN05444003_0679"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015035">
        <property type="term" value="F:protein-disulfide reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003752">
        <property type="entry name" value="DiS_bond_form_DsbB/BdbC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023380">
        <property type="entry name" value="DsbB-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024199">
        <property type="entry name" value="Uncharacterised_DsbB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02600">
        <property type="entry name" value="DsbB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF033913">
        <property type="entry name" value="S-S_format_DsbB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF158442">
        <property type="entry name" value="SSF158442"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="37"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="60"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="123"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG73220.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="150" mass="16227" checksum="7832D11087AD89C5" modified="2017-03-15" version="1">MTRQMRTTLAAAGSFALLAGAYIFQYLGYPPCTMCYWQRWPHFAAIAIGLVAFFVPARVLAYLGALAALTTSAIGVYHTGVERDWWEGPSSCTGSGLGGLSGDDLLSTDGPRLVMCDQVSWEFLTLSMASWNALFSFALALIWLAAARKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M7Q5</accession>
    <name>A0A1M5M7Q5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Peptide/nickel transport system substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0662</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial solute-binding protein 5 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72823.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0662"/>
    <dbReference type="EnsemblBacteria" id="SHG72823">
        <property type="protein sequence ID" value="SHG72823"/>
        <property type="gene ID" value="SAMN05444003_0662"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030288">
        <property type="term" value="C:outer membrane-bounded periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030678">
        <property type="entry name" value="Peptide/Ni-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039424">
        <property type="entry name" value="SBP_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000914">
        <property type="entry name" value="SBP_5_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30290">
        <property type="entry name" value="PTHR30290"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00496">
        <property type="entry name" value="SBP_bac_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002741">
        <property type="entry name" value="MppA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012499960" evidence="2">
        <location>
            <begin position="27"/>
            <end position="602"/>
        </location>
    </feature>
    <feature type="domain" description="SBP_bac_5" evidence="3">
        <location>
            <begin position="102"/>
            <end position="510"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG72823.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="602" mass="67950" checksum="4AF404FC9858D98D" modified="2017-03-15" version="1">MKPEFFRLLRRFTAVSAFICGTSAFADQHGIAMYGDPALPADFTHLPYANPDAPLGGKIVTSSVGTFDSLNPFIQKGSVHWQLRFLMQETLMGRSLDEPFSLYGVLAESIETGPNREWVEFTLRPEAKFSDGSPVTVDDVIWSYETLGTQGHGRYRGFWEKVESLEQVGERTVRFTFSTEDRELALLAGLRPILKKDQWEGLDFTESGLEVIPITSAEYVIDDFEAGRFISFKRNPDYWGNDAPFRRGTGNLDEIRLEFYGDETAAFEAFKVGEVNANREFNVAKWESQYNFPRVQNGEVVLSVLPHERPSGMTGYVMNTRRPQFEDWHVRDAMLHAFNFEFINEAMTGSAQPRITSYWSNSPLSMEHGPAEGRVAELLEPYSDQLPLGALFGYDLPVSDGSERNRAGIATALEQMERAGYTVQNGVMADAEGNPFTFEILLQSGSSENSAIIDIFSQALARLGIEVTITAVDNAQYRERTDAYDFDMTYYRRGVSLSPGNEQYAYYGSERADEPGGRNLMGVKSEAVDAMIGHLLNAPSQEDFVAAVKALDRTLTAGRYVIPIYQWNISRQAHDTRLKYPEDLPIFGDWPGWQPDVWWWEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M951</accession>
    <name>A0A1M5M951_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0691</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73489.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG73489">
        <property type="protein sequence ID" value="SHG73489"/>
        <property type="gene ID" value="SAMN05444003_0691"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG73489.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="40" mass="4098" checksum="1E4B2E19FC45C8FF" modified="2017-03-15" version="1">MAKEIKSVVIRSSDTIIGDALGAVALLVILFVGLSLPGMV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M994</accession>
    <name>A0A1M5M994_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pimeloyl-ACP methyl ester carboxylesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0705</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73785.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899330.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0705"/>
    <dbReference type="EnsemblBacteria" id="SHG73785">
        <property type="protein sequence ID" value="SHG73785"/>
        <property type="gene ID" value="SAMN05444003_0705"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12697">
        <property type="entry name" value="Abhydrolase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00111">
        <property type="entry name" value="ABHYDROLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013155360" evidence="1">
        <location>
            <begin position="23"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="domain" description="AB hydrolase-1" evidence="2">
        <location>
            <begin position="62"/>
            <end position="321"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG73785.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="332" mass="35392" checksum="ECF99BEF38CDA79F" modified="2017-03-15" version="1">MRLARRTFTIAAAAIAAGAAFTAVRGNARVQSAETQFPPIGEFVGVDGRRIHYVQEGAGPDLVLLHGAGGNVREFTFDLVGRLSDQFRVTVFDRPGMGYSDRVPGLDNKAFATEGDSPVAQAEMLRKASEILGLEAPIVAGHSFGGIVSMAWANLALDSESPANPSAIVSLAGVLMPWPGELGQYYRVNGSALGGVTTIPIISAFASDQRISDAIDGIFKPQPVPEGYADYVGGALTLRPSQFRANVRQVNTLRPHVVEMSKRYPELELPIEIVHGTLDATVPINVHPYELRKIVASANLTELQGVGHMPHHADPDATVAAIERAAMRAGLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M9C8</accession>
    <name>A0A1M5M9C8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">50S ribosomal protein L13</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rplM</name>
        <name evidence="5" type="ORF">SAMN05444003_0713</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the universal ribosomal protein uL13 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73944.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900392.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0713"/>
    <dbReference type="EnsemblBacteria" id="SHG73944">
        <property type="protein sequence ID" value="SHG73944"/>
        <property type="gene ID" value="SAMN05444003_0713"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00392">
        <property type="entry name" value="Ribosomal_L13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01366">
        <property type="entry name" value="Ribosomal_L13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005822">
        <property type="entry name" value="Ribosomal_L13"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005823">
        <property type="entry name" value="Ribosomal_L13_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036899">
        <property type="entry name" value="Ribosomal_L13_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11545">
        <property type="entry name" value="PTHR11545"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00572">
        <property type="entry name" value="Ribosomal_L13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002181">
        <property type="entry name" value="Ribosomal_L13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52161">
        <property type="entry name" value="SSF52161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01066">
        <property type="entry name" value="rplM_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 5" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01366"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG73944.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="153" mass="17206" checksum="C3EDFBB753B711F5" modified="2017-03-15" version="1">MKTFTATPADIDKKWYVIDAEGIVLGRLASIIAMRLRGKHKPSFTPHMDMGDNIIVINAEKVQMTGNKRDERYYWHTGHPGGIKSRTKAEILEGDHPERVVMKAVQRMLPGGKLSRQQMTHLRVFAGAEHGMDAQKPEVLDVASMNKKNTRTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MCR4</accession>
    <name>A0A1M5MCR4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0745</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74689.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG74689">
        <property type="protein sequence ID" value="SHG74689"/>
        <property type="gene ID" value="SAMN05444003_0745"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009912280" evidence="1">
        <location>
            <begin position="28"/>
            <end position="360"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG74689.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="360" mass="39366" checksum="8351634F2C1D2734" modified="2017-03-15" version="1">MIDMKIKTGIATLVAVLMTALAPMTFAQDLTVPQSATDPLVLKIGEGTPDPDMLEVFVADADTAIAGRYFVNETSLTFVPAFGFEAGQTYVAKIGNDGDVQEVPFSLAAAVATQPAKVTAAYPSGDVLPENTLRFYLHFSVPMQPQVAFDYIRLVDEAGVVDAAAFMQFKQELWNEDRTRLTLLIDPGRIKREVSTNVALGPALLEGRRYTLEVNSGWYSADGLSVLPGFAKTFNVTSDLRTRPDLSLWSANAPCTGTRDPLIVTLDRPFDRHLLQRALRVETKTNTEIKGHFEVENMEQQVSFTPLAPWPVEELELLADPTLEDVAGNNFQDLLDHVAGSQDHSPPTIILSISPVECAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MEJ8</accession>
    <name>A0A1M5MEJ8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Ala-tRNA(Pro) hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0795</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-II aminoacyl-tRNA synthetase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75788.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899470.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0795"/>
    <dbReference type="EnsemblBacteria" id="SHG75788">
        <property type="protein sequence ID" value="SHG75788"/>
        <property type="gene ID" value="SAMN05444003_0795"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004813">
        <property type="term" value="F:alanine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006419">
        <property type="term" value="P:alanyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018165">
        <property type="entry name" value="Ala-tRNA-synth_IIc_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018164">
        <property type="entry name" value="Ala-tRNA-synth_IIc_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018163">
        <property type="entry name" value="Thr/Ala-tRNA-synth_IIc_edit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012947">
        <property type="entry name" value="tRNA_SAD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01411">
        <property type="entry name" value="tRNA-synt_2c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07973">
        <property type="entry name" value="tRNA_SAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00863">
        <property type="entry name" value="tRNA_SAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55186">
        <property type="entry name" value="SSF55186"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50860">
        <property type="entry name" value="AA_TRNA_LIGASE_II_ALA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="AA_TRNA_LIGASE_II_ALA" evidence="6">
        <location>
            <begin position="1"/>
            <end position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50860"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG75788.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="238" mass="26317" checksum="5DED69EEA4BDE971" modified="2017-03-15" version="1">MTTPLFRDDAYLRDAPGTVLSRTEEGGIILDQSVFYPTSGGQPGDSGRLTWDGGEIEIATAIKGEGEEIILVPSEPVNLPPVDTQVNQSIDWDRRYRHMRVHTALHLLSVVIPLPVTGGSISTEKGRLDFDMPTAPENKDVLNDTLNRLIACKFPVTEEWITEEELDAQPTLVKTMSVQPPRGAGRIRLVRIGEGENTADLQPCGGTHVFNTDEIGTVRIGKIEKKGRQNRRVHLFLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MEP6</accession>
    <name>A0A1M5MEP6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0788</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75642.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899464.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0788"/>
    <dbReference type="EnsemblBacteria" id="SHG75642">
        <property type="protein sequence ID" value="SHG75642"/>
        <property type="gene ID" value="SAMN05444003_0788"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd05804">
        <property type="entry name" value="StaR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033891">
        <property type="entry name" value="TTC38"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16263">
        <property type="entry name" value="PTHR16263"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG75642.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="454" mass="50611" checksum="6E179686CE4AB521" modified="2017-03-15" version="1">MRTDISTCQVSLDDDTALQHWNGVIHGVLCHGQATGDHLNALLDRSPDFAMGHAMKGLACLMLGRRELVEVAQGACDDAFKKLDLGGATKRERLWCEALAEWLAWKPSNSIAKMEQALVLNPADTISMKLSHGIRFMLGDQKGMLWSIERSIIAHDESHPLYGYALGCRAFALEEVGRYAEAEQIGRRGLDFARDDAWGLHAVAHVYDMTHLTGQGIALIDNFPDAWSHCNNFRFHVWWHKALLHLDQGEIETVLDLYDTKIRDEKTDDYRDFSNASSLLLRLELEGVDVGNRWDELSLLAEKRSNDGCLTFADMHYMLALMGNKTEKGASRLTRHVIETAETNDDVGRVMRTPGVDLSKGIEAFGEADYATAFNFLKGAQPQFQSMGGSHAQRDVFERLTIEAGLRAGRLEDTEQLLGTRTALRGNQEDSFAASRMAKIQELRSGPTLFTAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MUV0</accession>
    <name>A0A1M5MUV0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">3-methyladenine DNA glycosylase AlkD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1032</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80995.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899772.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1032"/>
    <dbReference type="EnsemblBacteria" id="SHG80995">
        <property type="protein sequence ID" value="SHG80995"/>
        <property type="gene ID" value="SAMN05444003_1032"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014825">
        <property type="entry name" value="DNA_alkylation"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08713">
        <property type="entry name" value="DNA_alkylation"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="SSF48371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG80995.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="225" mass="25604" checksum="561941D6940C3617" modified="2017-03-15" version="1">MTPEEAIAALGSDPQKAAEMRAYHKLDRPYLGVANPVIDAHVKEWRKALDLDDRLALASGLWDTNIHEARVAAAKLLTQARIRPDDTGAWDLIASWVPSFDAWAVADHASMAGQKRLVWEPSRLDQVETWTRSDHMWTRRAALVMTLPWTKQNHPKPAELEARDRVLGWAASYVPDHDWFIQKAIAWWLRELSKHDAPRVVAFLDKHGADMKPFARKEAARKLPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N2B2</accession>
    <name>A0A1M5N2B2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1145</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83565.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899868.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1145"/>
    <dbReference type="EnsemblBacteria" id="SHG83565">
        <property type="protein sequence ID" value="SHG83565"/>
        <property type="gene ID" value="SAMN05444003_1145"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG83565.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="186" mass="20232" checksum="A1D41A0C3D1FAE56" modified="2017-03-15" version="1">MTAGIGHNSGRVIEAGYGWRKHVWTQARKELLPRLPIEVVRRRVVRAKELGLPYRTYAGLRASNGHDLIGFLFSTNALRVFRDGAEMPQDRKDHLEKLVRCSRLALAHKPVVASAFASPIDGGFAAPVLAHSWSEAGEILRSGLTEAGGPAGRFVLVAETGLEREWAEAAQMAGVLIGDAVFSPRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N2S6</accession>
    <name>A0A1M5N2S6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Secondary thiamine-phosphate synthase enzyme</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1153</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0047 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83747.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1153"/>
    <dbReference type="EnsemblBacteria" id="SHG83747">
        <property type="protein sequence ID" value="SHG83747"/>
        <property type="gene ID" value="SAMN05444003_1153"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.460">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001602">
        <property type="entry name" value="UPF0047"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035917">
        <property type="entry name" value="YjbQ-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30615">
        <property type="entry name" value="PTHR30615"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01894">
        <property type="entry name" value="UPF0047"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004681">
        <property type="entry name" value="UCP004681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111038">
        <property type="entry name" value="SSF111038"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00149">
        <property type="entry name" value="TIGR00149_YjbQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01314">
        <property type="entry name" value="UPF0047"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG83747.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="166" mass="18800" checksum="E48FA2032917022B" modified="2017-03-15" version="1">MSAAKFLELSNFGLKLMRYHGDPQTPSQHWPMQTTFEIATNGQGLYEFTPHVRTFVQGTGLLTLFVRHTSCSLLIQENADPEVKTDLRNYFARLVPPTTDPSMKYLTHTYEGPDDMPAHIKAAMMPVSLSIPVTDGTLTLGTWQGIYLFEHRDRPHRRSVVVHLSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N4F3</accession>
    <name>A0A1M5N4F3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Glyceraldehyde-3-phosphate dehydrogenase</fullName>
            <ecNumber evidence="8">1.2.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_1183</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.-" evidence="8"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84428.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899901.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1183"/>
    <dbReference type="EnsemblBacteria" id="SHG84428">
        <property type="protein sequence ID" value="SHG84428"/>
        <property type="gene ID" value="SAMN05444003_1183"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006006">
        <property type="term" value="P:glucose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020831">
        <property type="entry name" value="GlycerAld/Erythrose_P_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020830">
        <property type="entry name" value="GlycerAld_3-P_DH_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020829">
        <property type="entry name" value="GlycerAld_3-P_DH_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020828">
        <property type="entry name" value="GlycerAld_3-P_DH_NAD(P)-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006424">
        <property type="entry name" value="Glyceraldehyde-3-P_DH_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02800">
        <property type="entry name" value="Gp_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00044">
        <property type="entry name" value="Gp_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000149">
        <property type="entry name" value="GAP_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00078">
        <property type="entry name" value="G3PDHDRGNASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00846">
        <property type="entry name" value="Gp_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01534">
        <property type="entry name" value="GAPDH-I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00071">
        <property type="entry name" value="GAPDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0520">NAD</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2 8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Gp_dh_N" evidence="9">
        <location>
            <begin position="1"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="region of interest" description="Glyceraldehyde 3-phosphate binding" evidence="4">
        <location>
            <begin position="149"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="region of interest" description="Glyceraldehyde 3-phosphate binding" evidence="4">
        <location>
            <begin position="208"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="3">
        <location>
            <position position="150"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="11"/>
            <end position="12"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="32"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="77"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="117"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="180"/>
        </location>
        <ligand>
            <name>D-glyceraldehyde 3-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="231"/>
        </location>
        <ligand>
            <name>D-glyceraldehyde 3-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="313"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="site" description="Activates thiol group during catalysis" evidence="6">
        <location>
            <position position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007406"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000149-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000149-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000149-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000149-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000397"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU361160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM00846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG84428.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="332" mass="35550" checksum="E0D6136B5013EFDC" modified="2017-03-15" version="1">MTVYALNGLGRIGKLALKPLLDSGAEIAFVNDAVGDPAMHAHLLEFDTVHGRWDADFAATEDSITIDGVTIPALSTRKIEELPLDGVDILIDCTGAFKTKAKVAPYFAAGVKKVVVSAPVKDGPTANIVYGVNNDVYDPAVHQIVTAASCTTNCLAPVVKVIHEGLGIKHGSITTIHDVTNTQTIVDRPAKDLRRARSALNSLIPTTTGSATAITLIYPELTGKLNGHAVRVPLLNASLTDCVFEVERETTVEEVNALFEAAADGELKDILGYETRPLVSTDYTNDPRSSIVDAPSTMVVNGTQVKIYAWYDNEWGYAHRLIDVARMVGDGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N525</accession>
    <name>A0A1M5N525_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">TbpB_B_D domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1193</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84670.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG84670">
        <property type="protein sequence ID" value="SHG84670"/>
        <property type="gene ID" value="SAMN05444003_1193"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011250">
        <property type="entry name" value="OMP/PagP_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001677">
        <property type="entry name" value="TbpB_B_D"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01298">
        <property type="entry name" value="TbpB_B_D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56925">
        <property type="entry name" value="SSF56925"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TbpB_B_D" evidence="2">
        <location>
            <begin position="15"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="154"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01298"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG84670.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="175" mass="17797" checksum="E49C68B94D588E53" modified="2017-03-15" version="1">MLGLETRPSVMGTLTGKASYTGQFNGGGGLFDESGDFVRDGREAQGNITLDINFTDQMVSADLEGELDGATDFVGSVASMEIDGNGYSGALLTECESGITCTSNSMLSGNFFGPAAEEAAGHIDFDVTISVDADGEERRYLGVSAFAAGDAFEHADLSPGGGSGPPPLLPAPPGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N5P6</accession>
    <name>A0A1M5N5P6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Predicted PurR-regulated permease PerM</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1204</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the autoinducer-2 exporter (AI-2E) (TC 2.A.86) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84900.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899918.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1204"/>
    <dbReference type="EnsemblBacteria" id="SHG84900">
        <property type="protein sequence ID" value="SHG84900"/>
        <property type="gene ID" value="SAMN05444003_1204"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002549">
        <property type="entry name" value="AI-2E-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21716">
        <property type="entry name" value="PTHR21716"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01594">
        <property type="entry name" value="AI-2E_transport"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="61"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="144"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="209"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="234"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="280"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="316"/>
            <end position="349"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009773"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG84900.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="365" mass="39880" checksum="4D5F89DBBDE7A90B" modified="2017-03-15" version="1">MDLSVRQQALYWGIAAAVFFFVLWALGHVLLPFVIGGALAYCLDPVADRLERVGCSRSVSVLIISLAALLLFFILILLFIPTLIQQATSLLGAIPEAFRSLQTTLSDRFPQMSDENSIVRRQLVTIGDLLQARGGELLNGIVSYVLNFINVLVLLVVVPVVTVYLLFDWDRMIAKIDELLPRDHAPTIRRLASEIDDTLASFIRGQGTVCILLGLYYIIALTIVGLNYGIFVGFIAGFLTFIPFVGAAVGGILAIGLALFQFWGYTEVVDGETITHGTQWIRIGVVVAIYLLGQFVEGNILTPRLVGGSIGLHPVWLLLALSVFGSLFGFVGMLVAVPVAAMLGVLARFAMDQYRKSRLYRGTSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N5T8</accession>
    <name>A0A1M5N5T8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DnaA protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1205</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84924.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899919.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1205"/>
    <dbReference type="EnsemblBacteria" id="SHG84924">
        <property type="protein sequence ID" value="SHG84924"/>
        <property type="gene ID" value="SAMN05444003_1205"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013317">
        <property type="entry name" value="DnaA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00308">
        <property type="entry name" value="Bac_DnaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_DnaA" evidence="1">
        <location>
            <begin position="97"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00308"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG84924.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="216" mass="23956" checksum="EE64ED0C8B73904B" modified="2017-03-15" version="1">MSNQLVFDWPLTEGLKSQDFFVAPPNEHAVEMLRDPSAWPELKLVLVGPKASGKSHLSRIFAEETGAKILSSQDLPQNYIGPSPVVVEDADRLPPDQQEVLFHMHNNLRAAHVPLLLTASMAPSRWPLTLPDLKSRMEAATIVQIDQPDDTLLQVLLTKLFADRQIMPSPAVINYIATRMDRSYVAAGQIVEQLDRAAMAEKKPVSMKMAAALLDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N6U9</accession>
    <name>A0A1M5N6U9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transporter family-2 protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1196</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84733.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899911.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG84733">
        <property type="protein sequence ID" value="SHG84733"/>
        <property type="gene ID" value="SAMN05444003_1196"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006750">
        <property type="entry name" value="YdcZ"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34821">
        <property type="entry name" value="PTHR34821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04657">
        <property type="entry name" value="DMT_YdcZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="33"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="67"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="94"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG84733.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="143" mass="14900" checksum="5897692C88CB95E6" modified="2017-03-15" version="1">MTYHHIIMFFAGVGVPTLAAMNAQLGREIDSPALAATVLFSIACLCAAGVAWLTGANVSKLALAPKHLFFAGCLIAFYLLSVTWIAPIIGLGNAIFLVLIGQLVAAALIDQFGLFGATQIQISWTRAAGLALMASGILLIQKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N8W3</accession>
    <name>A0A1M5N8W3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">N-acetylmuramoyl-L-alanine amidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1251</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1251"/>
    <dbReference type="EnsemblBacteria" id="SHG85984">
        <property type="protein sequence ID" value="SHG85984"/>
        <property type="gene ID" value="SAMN05444003_1251"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008745">
        <property type="term" value="F:N-acetylmuramoyl-L-alanine amidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009253">
        <property type="term" value="P:peptidoglycan catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06583">
        <property type="entry name" value="PGRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.80.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036505">
        <property type="entry name" value="Amidase/PGRP_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002502">
        <property type="entry name" value="Amidase_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01510">
        <property type="entry name" value="Amidase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00644">
        <property type="entry name" value="Ami_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55846">
        <property type="entry name" value="SSF55846"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetylmuramoyl-L-alanine amidase" evidence="2">
        <location>
            <begin position="18"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00644"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG85984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="237" mass="26051" checksum="E582B791DFEBAF35" modified="2017-03-15" version="1">MGSRTVPTGSGQLRLTTYKSPNFGPRRGVDRPDIVVIHYTATASTEAALKTLCDPEAEVSAHYLIDQSGEVLSLVPEVMRAWHAGAGQWGKTKDVNSHSIGIELSNSGFEPFAAAQMDALEELLGGIFKRWTIRPERVIGHSDMAPGRKIDPGVRFDWLRLALSGFGVWPEGGNANGSFEASMKRFGYTAPQTEEQLLNSFRRRFRPHATGPLDDIDRAMIANLAQRFPVDANATWV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N9P0</accession>
    <name>A0A1M5N9P0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1260</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86162.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG86162">
        <property type="protein sequence ID" value="SHG86162"/>
        <property type="gene ID" value="SAMN05444003_1260"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="43"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG86162.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="67" mass="6955" checksum="1926629143D36442" modified="2017-03-15" version="1">MFRLILVLVLILVVTAAILITISAISAAKTATQIARGDNMPSAFQNIAYVALLILMIGICAGLLGLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5ND40</accession>
    <name>A0A1M5ND40_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">ATP-dependent zinc metalloprotease FtsH</fullName>
            <ecNumber evidence="7">3.4.24.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">ftsH</name>
        <name evidence="11" type="ORF">SAMN05444003_1339</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="7">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homohexamer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
            <orientation evidence="7">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the AAA ATPase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">In the C-terminal section; belongs to the peptidase M41 family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">In the central section; belongs to the AAA ATPase family.</text>
    </comment>
    <dbReference type="EC" id="3.4.24.-" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87430.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900034.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1339"/>
    <dbReference type="EnsemblBacteria" id="SHG87430">
        <property type="protein sequence ID" value="SHG87430"/>
        <property type="gene ID" value="SAMN05444003_1339"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004176">
        <property type="term" value="F:ATP-dependent peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030163">
        <property type="term" value="P:protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.760">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01458">
        <property type="entry name" value="FtsH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041569">
        <property type="entry name" value="AAA_lid_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003960">
        <property type="entry name" value="ATPase_AAA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005936">
        <property type="entry name" value="FtsH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011546">
        <property type="entry name" value="Pept_M41_FtsH_extracell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000642">
        <property type="entry name" value="Peptidase_M41"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037219">
        <property type="entry name" value="Peptidase_M41-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17862">
        <property type="entry name" value="AAA_lid_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06480">
        <property type="entry name" value="FtsH_ext"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01434">
        <property type="entry name" value="Peptidase_M41"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140990">
        <property type="entry name" value="SSF140990"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01241">
        <property type="entry name" value="FtsH_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00674">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 7" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="3 7 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2 7 11" id="KW-0645">Protease</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="7" id="KW-0862">Zinc</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="7"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="101"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="AAA" evidence="10">
        <location>
            <begin position="186"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="595"/>
            <end position="638"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="622"/>
            <end position="638"/>
        </location>
    </feature>
    <feature type="active site" evidence="7">
        <location>
            <position position="417"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="194"/>
            <end position="201"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="416"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="420"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="494"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG87430.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="638" mass="69134" checksum="BC138D9B2D213808" modified="2017-03-15" version="1">MGNTRNIVFWVVLFLLVLALFNLFGGGSSSGISNTKSYSEFVSAVEADQVARVELDGEQVRYQGTNGQNYVTIKPEDAAVTELLIAEGIPVSAESQQQSGLQTFLVGLLPFVLLIGVWVYFMNRMQGGGRGGAMGFGKSKAKLLTEKHGRVTFDEVAGIDEAKDELEEIVEFLRNPQKFSRLGGKIPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIVFIDEIDAVGRSRGAGYGGGNDEREQTLNQLLVEMDGFEANEGIIIIAATNRPDVLDPALLRPGRFDRQVQVPNPDIKGREKILGVHARKVPLGPDVDLRIIARGTPGFSGADLANLVNESALMAARVGRRFVTMIDFENAKDKVMMGSERRSMVMTEDEKKLTAYHEAGHAIVGLNMPQHDPIHKATIIPRGRALGLVLSLPERDQLSVSFTKYKSKIAMAMGGKVAEELIFGPENVTSGATSDIQQVSKIARAMVTQFGMSEKIGHIDYANEQQSYLGNYGGGTNHSAETQKLIDEEVRRIIDEGYEEAKRILTEKSQDLENLAQGLLEYETLTGNEITKVIAGQPLNRGDDADDTPPSDGNSVTAMPKTKSKKTRPDDGGMEPEPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NE34</accession>
    <name>A0A1M5NE34_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DNA-binding transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1362</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900053.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG87834">
        <property type="protein sequence ID" value="SHG87834"/>
        <property type="gene ID" value="SAMN05444003_1362"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="8"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG87834.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="306" mass="34032" checksum="DF9421592F4CF1DC" modified="2017-03-15" version="1">MDWRAPKFDWNQARAFWATAETGSLSEAARSLGLTQPTLGRQVSALEDDLDVVLFERIGKRLVLTPTGQDLLTHMRRMGDAAQQVELSASGRNKEVAGDVCVSVTDIFAQLVMPAIVAELRLRAPQVRILVQASNSLSDLQRRQADIAIRHVPPTQPELITRKVRDGQGKLYASQRYIAEKGPFWTLDDLGRADFIGSGNEEEMLSALKAMGVPVTSDNICVISDSGIGGWEMARASLGIMPMLEELAVAWPEMQIIVPDAPVYPVPYYLTTHRELHSSRRIRLVFDLLAELLSQPDLPIFKSRMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NGH6</accession>
    <name>A0A1M5NGH6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Putative NAD(P)H nitroreductase</fullName>
            <ecNumber evidence="2">1.-.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1389</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
        <text evidence="3">Binds 1 FMN per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the nitroreductase family.</text>
    </comment>
    <dbReference type="EC" id="1.-.-.-" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88329.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900457.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1389"/>
    <dbReference type="EnsemblBacteria" id="SHG88329">
        <property type="protein sequence ID" value="SHG88329"/>
        <property type="gene ID" value="SAMN05444003_1389"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.109.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029479">
        <property type="entry name" value="Nitroreductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000415">
        <property type="entry name" value="Nitroreductase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026021">
        <property type="entry name" value="YdjA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00881">
        <property type="entry name" value="Nitroreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000232">
        <property type="entry name" value="YdjA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55469">
        <property type="entry name" value="SSF55469"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="2 3" id="KW-0288">FMN</keyword>
    <keyword evidence="2" id="KW-0520">NAD</keyword>
    <keyword evidence="2" id="KW-0521">NADP</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nitroreductase" evidence="4">
        <location>
            <begin position="24"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="15"/>
            <end position="17"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="42"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="46"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="138"/>
            <end position="140"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR000232"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000232-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG88329.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="192" mass="20567" checksum="AB6490C14111E5A2" modified="2017-03-15" version="1">MPTPSPDALDFLLTRRSRPAKTLTTPVPDMETVKKLLVAAARTPDHGKLEPWRFIVLEKAALARLADAIPARGAELSIEPEKIDKAVAQFGNADLVVAVVTSPKPSEKILPIEQVYSAGAACLALLNAALAAGWGANWLSGWASHDATFVQENLGLAAQESIAGFIHLGTETSTPPERPRPNMDQITTWVTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NHD9</accession>
    <name>A0A1M5NHD9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycine/D-amino acid oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1416</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88855.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900102.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1416"/>
    <dbReference type="EnsemblBacteria" id="SHG88855">
        <property type="protein sequence ID" value="SHG88855"/>
        <property type="gene ID" value="SAMN05444003_1416"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAO" evidence="1">
        <location>
            <begin position="3"/>
            <end position="334"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG88855.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="356" mass="37733" checksum="81D484FEBE963A2E" modified="2017-03-15" version="1">MIDFLIIGGGVAGCSAAAHLSHQGKVVVLEAEDALALHASSRSAAAFEKNYGLASTVALTEASEDGHIAFNVLSPRGLLLLAKKNEDSAFEGDMHTLGLSEVSMDDALGMVPIVNSDVVMRAAHHSAMWDIDTDRLIQTFVSQAKGNGAEVLIKSKVSGIEKTPRGWTIAMGDTHLDAKCLVNAAGPWADEIAQMAGVATIGLQPYRRSMGRIPAPAGLDVSKWPMTFGPGESWYAKPDAGALIVSPADEDPMDPHDAYSDDVILAEGFARYESYVTEPVTRLITSWAGLRTFAPDRQLVLGPEPSETSFIWCAGQGGYGMQSSHGAAQLISELVTGRPTSLPADVVEALSPSRFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NPD4</accession>
    <name>A0A1M5NPD4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1514</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91049.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900188.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1514"/>
    <dbReference type="EnsemblBacteria" id="SHG91049">
        <property type="protein sequence ID" value="SHG91049"/>
        <property type="gene ID" value="SAMN05444003_1514"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019634">
        <property type="term" value="P:organic phosphonate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11310">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038058">
        <property type="entry name" value="PhnH-like_sp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008772">
        <property type="entry name" value="Phosphonate_metab_PhnH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05845">
        <property type="entry name" value="PhnH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF020680">
        <property type="entry name" value="PhnH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF159709">
        <property type="entry name" value="SSF159709"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03292">
        <property type="entry name" value="PhnH_redo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG91049.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="186" mass="19491" checksum="CBECDD776E663BD1" modified="2017-03-15" version="1">MDAQTLGGGFTEPAIQSAHAFRSVMEVMARPGTIQDISGAEPPSPLSRAAGCILLTLCDADTPVYLAGETDTAEIRAWIAFHTGAPLMGPSHAMFAVGTWEALAPLSAYQIGTSEYPDRSATLIVESSSLDGEATLKGPGIKDQASLNLPELAAFQANQAKFPLGLDFYFTCGDQLAALPRSTEVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NRD6</accession>
    <name>A0A1M5NRD6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ADP-ribose pyrophosphatase YjhB, NUDIX family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1559</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG92136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900228.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1559"/>
    <dbReference type="EnsemblBacteria" id="SHG92136">
        <property type="protein sequence ID" value="SHG92136"/>
        <property type="gene ID" value="SAMN05444003_1559"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG92136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="144" mass="16310" checksum="2FAC7F46BF59AC58" modified="2017-03-15" version="1">MPRIAARAIILYEDKLLIVNAWKGHTRLWCLPGGGAEDHSSLPENLAREVMEECGLEIEVGGPCLVNEFHDPKRKFHQIEVFFRCRLLDGDPFGPWTDPEGIVAHRRWVTRDELKTLPHKPSSLADVAWGTGEATYDPLELIVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NRV8</accession>
    <name>A0A1M5NRV8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Chaperonin GroEL</fullName>
            <ecNumber evidence="6">5.6.1.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">60 kDa chaperonin</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Chaperonin-60</fullName>
            <shortName evidence="6">Cpn60</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">groEL</name>
        <name evidence="6" type="synonym">groL</name>
        <name evidence="9" type="ORF">SAMN05444003_1562</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 8">Together with its co-chaperonin GroES, plays an essential role in assisting protein folding. The GroEL-GroES system forms a nano-cage that allows encapsulation of the non-native substrate proteins and provides a physical environment optimized to promote and accelerate protein folding.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6 8">Forms a cylinder of 14 subunits composed of two heptameric rings stacked back-to-back. Interacts with the co-chaperonin GroES.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the chaperonin (HSP60) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="5.6.1.7" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG92208.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900231.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1562"/>
    <dbReference type="EnsemblBacteria" id="SHG92208">
        <property type="protein sequence ID" value="SHG92208"/>
        <property type="gene ID" value="SAMN05444003_1562"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042026">
        <property type="term" value="P:protein refolding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03344">
        <property type="entry name" value="GroEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.7.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00600">
        <property type="entry name" value="CH60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018370">
        <property type="entry name" value="Chaperonin_Cpn60_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001844">
        <property type="entry name" value="Cpn60/GroEL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002423">
        <property type="entry name" value="Cpn60/GroEL/TCP-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027409">
        <property type="entry name" value="GroEL-like_apical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027413">
        <property type="entry name" value="GROEL-like_equatorial_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027410">
        <property type="entry name" value="TCP-1-like_intermed_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00118">
        <property type="entry name" value="Cpn60_TCP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00298">
        <property type="entry name" value="CHAPERONIN60"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48592">
        <property type="entry name" value="SSF48592"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52029">
        <property type="entry name" value="SSF52029"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54849">
        <property type="entry name" value="SSF54849"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02348">
        <property type="entry name" value="GroEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00296">
        <property type="entry name" value="CHAPERONINS_CPN60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 6" id="KW-0143">Chaperone</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 6" id="KW-0413">Isomerase</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="30"/>
            <end position="33"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="51"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="87"/>
            <end position="91"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="415"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="496"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006607"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00600"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000419"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG92208.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="546" mass="57360" checksum="6024DC46198272FE" modified="2017-03-15" version="1">MAAKDVKFDADARSRMMTGVNTLANAVKVTLGPKGRNVVLDKSFGAPRITKDGVSVAKEIELEDKFENMGAQMVKEVASRTNDEAGDGTTTATVLAQAIVTEGMKSVAAGMNPMDLKRGIDMATSAVVDAIKGAAREVKDSDEVAQVGTISANGEAEIGRQIADAMQKVGNEGVITVEENKGLETETDVVEGMQFDRGYLSPYFVTNSDKMTAELEDCIILLHEKKLSSLQPMVPLLESVIQSGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLESVTIDMLGSAKRVNITKDETTIVDGAGDKAEIEARVSQIRTQVEETTSDYDREKLQERVAKLAGGVAVIRVGGMSEVEVKERKDRVDDALNATRAAVQEGVVVGGGVALVQGAKSLDGMEGANSDQTVGIDIVRRAIEAPLRQIAENSGVDGAVVAGKIRESDDAAFGFNAQAEEYGDMFAFGVIDPAKVVRTALQDAASVAGLLITTEAMVADKPAKEGAGAPAMPDMGGMGGMM</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NRX5</accession>
    <name>A0A1M5NRX5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1561</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG92195.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900230.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1561"/>
    <dbReference type="EnsemblBacteria" id="SHG92195">
        <property type="protein sequence ID" value="SHG92195"/>
        <property type="gene ID" value="SAMN05444003_1561"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG92195.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="151" mass="16589" checksum="B45380C033B2825F" modified="2017-03-15" version="1">MKPGEEDAVERLLLAAFETDAEAWLVRKLRKANAIAGETVLPMGDDIIGYFALSKMVKPKGWLALAPVAIDPEFHRQGFGKRMLGMLTEWAKITSTPVVVLGNPVFYERCEFDRSAAAKLSGPYPIEFTMLVGVDGTPEEELIYPAAFNGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NTG3</accession>
    <name>A0A1M5NTG3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Co-chaperonin GroES</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">10 kDa chaperonin</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">Chaperonin-10</fullName>
            <shortName evidence="3">Cpn10</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">groES</name>
        <name evidence="3" type="synonym">groS</name>
        <name evidence="5" type="ORF">SAMN05444003_1563</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 4">Together with the chaperonin GroEL, plays an essential role in assisting protein folding. The GroEL-GroES system forms a nano-cage that allows encapsulation of the non-native substrate proteins and provides a physical environment optimized to promote and accelerate protein folding. GroES binds to the apical surface of the GroEL ring, thereby capping the opening of the GroEL channel.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Heptamer of 7 subunits arranged in a ring. Interacts with the chaperonin GroEL.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3 4">Belongs to the GroES chaperonin family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG92243.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900232.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1563"/>
    <dbReference type="EnsemblBacteria" id="SHG92243">
        <property type="protein sequence ID" value="SHG92243"/>
        <property type="gene ID" value="SAMN05444003_1563"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00320">
        <property type="entry name" value="cpn10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.33.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00580">
        <property type="entry name" value="CH10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020818">
        <property type="entry name" value="Chaperonin_GroES"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037124">
        <property type="entry name" value="Chaperonin_GroES_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018369">
        <property type="entry name" value="Chaprnonin_Cpn10_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10772">
        <property type="entry name" value="PTHR10772"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00166">
        <property type="entry name" value="Cpn10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00297">
        <property type="entry name" value="CHAPERONIN10"/>
    </dbReference>
    <dbReference type="SMART" id="SM00883">
        <property type="entry name" value="Cpn10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00681">
        <property type="entry name" value="CHAPERONINS_CPN10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 4" id="KW-0143">Chaperone</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00580"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU000535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG92243.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="95" mass="10141" checksum="BC4CD4067C485309" modified="2017-03-15" version="1">MAFTPLHDRVLVRRIESDEKTAGGLIIPDSAKEKPAEGEVVSVGAGARKDSGELIAMDVKAGDKVLFGKWSGTEVKIDGEDLLIMKESDILGIMS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NVV6</accession>
    <name>A0A1M5NVV6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Abasic site processing protein</fullName>
            <ecNumber evidence="7">3.4.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_1620</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the SOS response-associated peptidase family.</text>
    </comment>
    <dbReference type="EC" id="3.4.-.-" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900283.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG93640">
        <property type="protein sequence ID" value="SHG93640"/>
        <property type="gene ID" value="SAMN05444003_1620"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006974">
        <property type="term" value="P:cellular response to DNA damage stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018142">
        <property type="term" value="P:protein-DNA covalent cross-linking"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1680.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003738">
        <property type="entry name" value="SRAP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036590">
        <property type="entry name" value="SRAP-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13604">
        <property type="entry name" value="PTHR13604"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02586">
        <property type="entry name" value="SRAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143081">
        <property type="entry name" value="SSF143081"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0190">Covalent protein-DNA linkage</keyword>
    <keyword evidence="3" id="KW-0227">DNA damage</keyword>
    <keyword evidence="6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 7" id="KW-0645">Protease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU364100"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG93640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="203" mass="22602" checksum="1779E4AEEABDC2CD" modified="2017-03-15" version="1">MPGRLFLARELAELAPEWSVDELDFGSPRRNIAPGQEVLTLTADGAWMMHWGIIPVGRKNARGRSVMETIINARSENVFDKSAFEGVRRAVVPSDGWYEWAGETCKKTAWSISPNDKSLLFFAAIYDVWNGPGGIEVPQVTTVTCEPNADVREIHHRMGVLFARAQVQVWLGEYDEAAKGLMRPYPDGGLVVVEATNVDWNGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NWD8</accession>
    <name>A0A1M5NWD8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1605</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93293.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG93293">
        <property type="protein sequence ID" value="SHG93293"/>
        <property type="gene ID" value="SAMN05444003_1605"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="42"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="77"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG93293.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="119" mass="13453" checksum="EC68DD106494BF99" modified="2017-03-15" version="1">MAKIDDLIRDALDEKDREMMKETDELGYFELGLSQFSGKLGWVTWVIMIVQATLFFIGVWCAYNFFGTTEVLAAVKWGISGGVLIIVAASLKFSLMPQIQADRIIREVKRVELMLASRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NWV8</accession>
    <name>A0A1M5NWV8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Cell shape-determining protein MreC</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Cell shape protein MreC</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1635</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the MreC family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93990.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900297.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1635"/>
    <dbReference type="EnsemblBacteria" id="SHG93990">
        <property type="protein sequence ID" value="SHG93990"/>
        <property type="gene ID" value="SAMN05444003_1635"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.340">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.350">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042177">
        <property type="entry name" value="Cell/Rod_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042175">
        <property type="entry name" value="Cell/Rod_MreC_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007221">
        <property type="entry name" value="MreC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34138">
        <property type="entry name" value="PTHR34138"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04085">
        <property type="entry name" value="MreC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00219">
        <property type="entry name" value="mreC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0133">Cell shape</keyword>
    <keyword evidence="5" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="17"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="5">
        <location>
            <begin position="75"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013855"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00032089"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG93990.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="304" mass="33399" checksum="9FF7931FE2AE1FD5" modified="2017-03-15" version="1">MARDNKSEDFIGPIRRLLVGLFVFLLLGVFLVWRIDSPRVERFRAAVIDEVVPSFDWAMAPVTGAIDLVRDFQSYQQLAEQNDNLRRELQQMKAWKEAALQLEQENARLLDLNKVSLDPKLTYITGVVVTDSGSPFRQSVLINVGARDGIIDGWPTMDGIGLVGRISGVGQDTSRVILLTDTSSRIPVTVQPSGQKAILAGDNTLNPLLEFIEDPGLVRPGDRVISSGDGGVFPSDLLVGQVALGTDNRLRVRLSADYERLEFLRVLRAQPHEVIEDPGGLLATDEVDALIEDVLEETAEATDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NX34</accession>
    <name>A0A1M5NX34_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Putative ABC transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_1623</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ABC-4 integral membrane protein family. LolC/E subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93719.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900286.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1623"/>
    <dbReference type="EnsemblBacteria" id="SHG93719">
        <property type="protein sequence ID" value="SHG93719"/>
        <property type="gene ID" value="SAMN05444003_1623"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003838">
        <property type="entry name" value="ABC3_permease_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038766">
        <property type="entry name" value="Membrane_comp_ABC_pdt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30287">
        <property type="entry name" value="PTHR30287"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02687">
        <property type="entry name" value="FtsX"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="263"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="308"/>
            <end position="341"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="361"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="399"/>
            <end position="422"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="428"/>
            <end position="454"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="770"/>
            <end position="791"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="803"/>
            <end position="827"/>
        </location>
    </feature>
    <feature type="domain" description="FtsX" evidence="8">
        <location>
            <begin position="294"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="domain" description="FtsX" evidence="8">
        <location>
            <begin position="747"/>
            <end position="828"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG93719.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="842" mass="88694" checksum="5224868853D659A2" modified="2017-03-15" version="1">MSLSLSAKFARRELRGGLHGFRVFLACLALGVAAIAAVGTVRAGIQAGLEEAGSALLGGDAEATFTYRFASDDEREWLASIGTAVSETVDFRSMLVVDTGETTERSLTQVRAVDDLYPLIGNVTLDPPIPLSEALAGSSNLPGGVMERVLADRLGLTPGDPFRLGNQDFVFSAYLDQYPDNASGGFGLGPRSIVRTVDLANSGLIVEGTLFDTNYRVDLPPETDLDALETQAKAIFESTGMRWRDAREGAGGTATFIDRLGAFLVLVGLSGLAVGGVGVSAAVRAYLAGKTGVIATLKTLGATRRTIFLTYFLQVGALTLLGVALGLILGAGIPLALAPLIEAQLPLPSDFRIYPAPLFEAAIYGLLAALIFTLWPLARTDDIKAATLFRDAFASGSTLPRWPFLVTTLLLIAALLGAAILFSGTVFLTLWTAGGIMGALLILILASVLIRWIARRMRRPTRGRAALHLAFGAIGARGGEATSVVLSLGLGLSVLAAIGQIDGNLRAAFSDELPAVAPSYFFVDIQPDQIDGFRERLADDPQVSQVDAAPMLRGIVTRINGEEAVTATDNHWVVQGDRGVTYDDTMPEGTRLTAGEWWPEGYSGPPLISFSAEEATEMGLEIGDEMTVNILGRDITGTIANFREVTWGDAGIGFVLSVNKTALAGAPHSWISTVYAEEEAEAQILRDLASAYPNITAIRIRDAVDQVSSLVERVAAATRYGALATLLTGFLVLIGAAAAGERARTFEAAVLKTIGAPRSQIIRSFALRSLILGLSAGIVALAAGIAGAWAIQTFVMENDYAVIWTNALTVIAGGIAVSLLAGLAFAIRPLAAHPAQVLRARE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NX84</accession>
    <name>A0A1M5NX84_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uracil-DNA glycosylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1641</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG94131.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900480.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1641"/>
    <dbReference type="EnsemblBacteria" id="SHG94131">
        <property type="protein sequence ID" value="SHG94131"/>
        <property type="gene ID" value="SAMN05444003_1641"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005122">
        <property type="entry name" value="Uracil-DNA_glycosylase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036895">
        <property type="entry name" value="Uracil-DNA_glycosylase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03167">
        <property type="entry name" value="UDG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00986">
        <property type="entry name" value="UDG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52141">
        <property type="entry name" value="SSF52141"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UDG" evidence="1">
        <location>
            <begin position="30"/>
            <end position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00986"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG94131.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="196" mass="21919" checksum="4CDE5DC2AF7BD208" modified="2017-03-15" version="1">MNTNHDFSELLKRISACTICDGLELGPNPIFQIDQNAKILIVGQAPGRITHTKNRPFDDPSGDRLRRWLGVDRTTFYNDPRMGIFPMGLCFPGGGKGGDAPPRKECADTWRLPVLSHLRQVELTILMGRYAIDWHAPKHKRSSVAGAVSSIDPAIAKSIILPHPSPRNMRWFKNHPWFDAEIIPALQKRVAAILSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PIK2</accession>
    <name>A0A1M5PIK2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Nidogen-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1661</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH01575.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1661"/>
    <dbReference type="EnsemblBacteria" id="SHH01575">
        <property type="protein sequence ID" value="SHH01575"/>
        <property type="gene ID" value="SAMN05444003_1661"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007160">
        <property type="term" value="P:cell-matrix adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.150.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028992">
        <property type="entry name" value="Hedgehog/Intein_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001343">
        <property type="entry name" value="Hemolysn_Ca-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036844">
        <property type="entry name" value="Hint_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003886">
        <property type="entry name" value="NIDO_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011049">
        <property type="entry name" value="Serralysin-like_metalloprot_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00353">
        <property type="entry name" value="HemolysinCabind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13403">
        <property type="entry name" value="Hint_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06119">
        <property type="entry name" value="NIDO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51120">
        <property type="entry name" value="SSF51120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51294">
        <property type="entry name" value="SSF51294"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NIDO" evidence="1">
        <location>
            <begin position="128"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="domain" description="Hint_2" evidence="2">
        <location>
            <begin position="390"/>
            <end position="527"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF06119"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13403"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH01575.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="576" mass="59797" checksum="3872F9E71056E2A8" modified="2017-03-15" version="1">MATMNTGLGGPAGYGENVFSSSTLTAGNLDDGSILVDVTSVFGPSGISFFGTSYTGIYINTNGLITFDGPETAFTPVGIDGFTSPAIAPFWSDVNINDGGEIYWDLDPTAGTFTITWLDVAPYTGTGTNSFQVVLTDTGGGDFSVEFIYEDIQWTNGFTGDATVGYTDGGTNDTVLPGSGDPAALINYPTTDFGNGDPNGTWESDVIGGTIVVSDGTVSGTAGDDIIDASYDGDPENDFVDGGDGTGPNRNEDIIDAGAGNDTVFAGDENDTVFGRGGDDTIFGGTGADNIRGNAGNDVIHVAEGDIARGGRGDDTFLVTDLGESGASTITVIGGETGESAGDTLDFQGLTPFGGITFTNTDDAAGGLSGFATLTDGTVLTFSQIENIIICFTAGTSISTPNGPRPIETLRPGDLVLTLDNGPQPLRWIGMRTVPAEGKLAPVRFEAGAIGNTKDLLVSPQHRMLYQGSRSELLFSHSEVLIPAKHLINGETITQEVGKSVAYVHIMFDEHQVVFAEDAPSESFFPGETGLDAVGSTEREELFHIFPDLRSLPATYGPLARPSLRGFEAELLGVGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PL85</accession>
    <name>A0A1M5PL85_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">tRNA (guanine-N(7)-)-methyltransferase</fullName>
            <ecNumber evidence="1">2.1.1.33</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">tRNA (guanine(46)-N(7))-methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">tRNA(m7G46)-methyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">trmB</name>
        <name evidence="2" type="ORF">SAMN05444003_1696</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>guanosine(46) in tRNA + S-adenosyl-L-methionine = N(7)-methylguanosine(46) in tRNA + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42708"/>
            <dbReference type="Rhea" id="RHEA-COMP:10188"/>
            <dbReference type="Rhea" id="RHEA-COMP:10189"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74269"/>
            <dbReference type="ChEBI" id="CHEBI:74480"/>
            <dbReference type="EC" id="2.1.1.33"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">tRNA modification; N(7)-methylguanine-tRNA biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.33" evidence="1"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02269.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900512.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1696"/>
    <dbReference type="EnsemblBacteria" id="SHH02269">
        <property type="protein sequence ID" value="SHH02269"/>
        <property type="gene ID" value="SAMN05444003_1696"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00989"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008176">
        <property type="term" value="F:tRNA (guanine-N7-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01057">
        <property type="entry name" value="tRNA_methyltr_TrmB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003358">
        <property type="entry name" value="tRNA_(Gua-N-7)_MeTrfase_Trmb"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23417">
        <property type="entry name" value="PTHR23417"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02390">
        <property type="entry name" value="Methyltransf_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00091">
        <property type="entry name" value="TIGR00091"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51625">
        <property type="entry name" value="SAM_MT_TRMB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="1 2" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0819">tRNA processing</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="1">
        <location>
            <begin position="216"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="69"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="94"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="121"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="143"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="147"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="179"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01057"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH02269.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="237" mass="27354" checksum="CD1C2F916B020007" modified="2017-03-15" version="1">MTQDKHPSGAPWRNFYGRFKGKGMRAAQQAYLDEDLAALSPGLVTWEDNPDRVPLDLQSLFGDRQLWLEIGFGGGEHFVHMAGLYPDVGIIGCEPYINGVAMLLGKIRKAGVDNITIHPGDARDLFDVVPDESFSKVFLNYPDPWPKKRHHRRRFVTPEHLEPLHRVMKPGAELRVATDIPDYVRQTLEQVPRHGFEWLAEEAADWRDPWSDWTSTRYEQKALREGRVPHYLTFRRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PLW5</accession>
    <name>A0A1M5PLW5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">3-oxoadipate enol-lactonase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1718</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02700.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1718"/>
    <dbReference type="EnsemblBacteria" id="SHH02700">
        <property type="protein sequence ID" value="SHH02700"/>
        <property type="gene ID" value="SAMN05444003_1718"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047570">
        <property type="term" value="F:3-oxoadipate enol-lactonase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042952">
        <property type="term" value="P:beta-ketoadipate pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026968">
        <property type="entry name" value="PcaD/CatD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12697">
        <property type="entry name" value="Abhydrolase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00111">
        <property type="entry name" value="ABHYDROLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02427">
        <property type="entry name" value="protocat_pcaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="28"/>
            <end position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH02700.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="270" mass="29201" checksum="398558DA9E4A277E" modified="2017-03-15" version="1">MEQFVTSRDGTRIFAKQDGDAATDAPTLVFANSLGTTLELWDQVLPLLPDGMRIIRFDNRGHGRSDVPSGPYTMGAMVSDAEAVCDGFEVKDCVFVGLSVGGMIAQGLAIKRLDLVRGLVLSNTAAKIGNKKLWRDRIDIVRQKGMSGVADDVMSRWFGRAFRTSPDVKPWKEMVSKVPVEGYCGVCSAIAGTDFYTPTSGLRLPTLGIAGSEDRSTPPDLVRETVDLIPGSEFKLIRKAGHLPCVDQTEAFAETLNGFLYRIGHSVSAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PMU0</accession>
    <name>A0A1M5PMU0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Phosphate acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1738</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the phosphate acetyltransferase and butyryltransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03088.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900548.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1738"/>
    <dbReference type="EnsemblBacteria" id="SHH03088">
        <property type="protein sequence ID" value="SHH03088"/>
        <property type="gene ID" value="SAMN05444003_1738"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012147">
        <property type="entry name" value="P_Ac_Bu_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002505">
        <property type="entry name" value="PTA_PTB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01515">
        <property type="entry name" value="PTA_PTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000428">
        <property type="entry name" value="P_Ac_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PTA_PTB" evidence="2">
        <location>
            <begin position="92"/>
            <end position="305"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH03088.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="312" mass="32445" checksum="04346DF49B1542F6" modified="2017-03-15" version="1">MTASSFLSSTEPQAPANLIKMGQDFGSPRVAIARAGAPLPMQAAKEATEADLMIPVFVGERDMIEAEAANLNWDISGFDLHDTTGEEEAGRKAAELCGAGKADVLMKGQLHTDVFMKAAVSRDAGLRTGRRFVHIFHISPPDGSKPILISDAAVNVEPNLETRQDAIREVSDLLIRLGTERPKLAILSATESAIPSVPSSMDGKELADWAKDAVPEADVSGPLAFDLIVSPDAVATKKLTADPVAGQADAIIVPDIVSGNALFKAFVYIGGGCAAGVVTGAKVPILLTSRADPAAARMASVALAAIKCALPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PMU5</accession>
    <name>A0A1M5PMU5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Acetate kinase</fullName>
            <ecNumber evidence="6">2.7.2.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Acetokinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">ackA</name>
        <name evidence="8" type="ORF">SAMN05444003_1739</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>acetate + ATP = acetyl phosphate + ADP</text>
            <dbReference type="Rhea" id="RHEA:11352"/>
            <dbReference type="ChEBI" id="CHEBI:22191"/>
            <dbReference type="ChEBI" id="CHEBI:30089"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.2.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="6">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="6">Mg(2+). Can also accept Mn(2+).</text>
    </comment>
    <comment type="pathway">
        <text evidence="6">Metabolic intermediate biosynthesis; acetyl-CoA biosynthesis; acetyl-CoA from acetate: step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the acetokinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.7.2.1" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03112.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900549.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1739"/>
    <dbReference type="EnsemblBacteria" id="SHH03112">
        <property type="protein sequence ID" value="SHH03112"/>
        <property type="gene ID" value="SAMN05444003_1739"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00340">
        <property type="reaction ID" value="UER00458"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008776">
        <property type="term" value="F:acetate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006085">
        <property type="term" value="P:acetyl-CoA biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006082">
        <property type="term" value="P:organic acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00020">
        <property type="entry name" value="Acetate_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004372">
        <property type="entry name" value="Ac/propionate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000890">
        <property type="entry name" value="Aliphatic_acid_kin_short-chain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023865">
        <property type="entry name" value="Aliphatic_acid_kinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21060">
        <property type="entry name" value="PTHR21060"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00871">
        <property type="entry name" value="Acetate_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000722">
        <property type="entry name" value="Acetate_prop_kin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00471">
        <property type="entry name" value="ACETATEKNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01075">
        <property type="entry name" value="ACETATE_KINASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01076">
        <property type="entry name" value="ACETATE_KINASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 6 7" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6 7" id="KW-0808">Transferase</keyword>
    <feature type="binding site" evidence="6">
        <location>
            <position position="6"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="13"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="79"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="190"/>
            <end position="194"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="307"/>
            <end position="311"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="338"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="6">
        <location>
            <position position="167"/>
        </location>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="6">
        <location>
            <position position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008748"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00020"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003835"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH03112.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="354" mass="36891" checksum="B5B08A327CC56961" modified="2017-03-15" version="1">MILVLNAGSSSLKVEVFDLQLTSVLSGSVTNIGTSGTLSVGGRKQEIETASHAHALSAMLAALNENGVGLEKLSAAAHRVVHGGTLLTEPAQVTPQVISAIENVTPLAPLHNSHNLAGILALQEAAPELPQYCSFGTAFHATNPDVAVRYAIPQTQHDAGIRRYGFHGLSYANMVAEFGEALPSRLLALHLGNGASLCAIKDGKSIATSMGYSPLSGLTMGTRSGDIDGAAVLRMSKALGEDETDRMLNKNSGLKALAGDNNMKTLLERDDEDAAFAVEHFCYWAARHAGSAIVAMGGVDAVAFTGGIGENAAPVREKIVEHLSCFGSFDVHVIAADEEKAIARDALSLIEAGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PR24</accession>
    <name>A0A1M5PR24_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">2,5-diketo-D-gluconate reductase B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1793</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04181.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900593.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1793"/>
    <dbReference type="EnsemblBacteria" id="SHH04181">
        <property type="protein sequence ID" value="SHH04181"/>
        <property type="gene ID" value="SAMN05444003_1793"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020471">
        <property type="entry name" value="AKR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018170">
        <property type="entry name" value="Aldo/ket_reductase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023210">
        <property type="entry name" value="NADP_OxRdtase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036812">
        <property type="entry name" value="NADP_OxRdtase_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43827">
        <property type="entry name" value="PTHR43827"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00248">
        <property type="entry name" value="Aldo_ket_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000097">
        <property type="entry name" value="AKR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00069">
        <property type="entry name" value="ALDKETRDTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51430">
        <property type="entry name" value="SSF51430"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00798">
        <property type="entry name" value="ALDOKETO_REDUCTASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00062">
        <property type="entry name" value="ALDOKETO_REDUCTASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldo_ket_red" evidence="4">
        <location>
            <begin position="10"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="1">
        <location>
            <position position="43"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="101"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Lowers pKa of active site Tyr" evidence="3">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR000097-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000097-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000097-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH04181.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="272" mass="30140" checksum="AD0D6D121CD47999" modified="2017-03-15" version="1">MDRMTSAPHIGFGTWNRPDGTAYQCALDALEIGYRHLDCAEGYENEADVGRAISVSGLERNELWVTTKVAPESFGPGQVRPHVEASLEKLGVGPVDLLLLHYPSINDEYDIEDYMAQFAQVYDAGLTRNIGVSNFTIRYLDRAVELLGERRLLTNQVELHPFVANTPIVEHSRQMGIGLTAFSPLARGAVVTDPVLQAIAEECGATASQVGLAYLLAKGYWVIPSAGARERIQENFEAQNVELSKDQIAQIDALDRKMRLVDGSWCPKWDEY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PRC7</accession>
    <name>A0A1M5PRC7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Precorrin-4/cobalt-precorrin-4 C11-methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1800</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; adenosylcobalamin biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the precorrin methyltransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04324.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900876.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1800"/>
    <dbReference type="EnsemblBacteria" id="SHH04324">
        <property type="protein sequence ID" value="SHH04324"/>
        <property type="gene ID" value="SAMN05444003_1800"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00148"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046026">
        <property type="term" value="F:precorrin-4 C11-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd11641">
        <property type="entry name" value="Precorrin-4_C11-MT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1010.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000878">
        <property type="entry name" value="4pyrrol_Mease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035996">
        <property type="entry name" value="4pyrrol_Methylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014777">
        <property type="entry name" value="4pyrrole_Mease_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014776">
        <property type="entry name" value="4pyrrole_Mease_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006362">
        <property type="entry name" value="Cbl_synth_CobM/CibF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003043">
        <property type="entry name" value="Uropor_MeTrfase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00590">
        <property type="entry name" value="TP_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53790">
        <property type="entry name" value="SSF53790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01465">
        <property type="entry name" value="cobM_cbiF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00839">
        <property type="entry name" value="SUMT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 7" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="4 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TP_methylase" evidence="6">
        <location>
            <begin position="2"/>
            <end position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH04324.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="257" mass="27404" checksum="01A5204C235BC5D7" modified="2017-03-15" version="1">MTVYFIGAGPGDPELLTLKARRIISECPVCLYAGSLVPAEVVACAPEGAKVMDTAPMHLDETHAEILAAHQACQDVARVHSGDPSLYGAIAEQIRRLKADGIDYQIIPGVPAYAAAAAALGTELTVPEVAQSIILTRMSMKSTGMPEGETLENFARTGATLAIHLGVRALREIERQLIPLYGEDCPCVVVYRVGWPDQMLIRGTLSTVREKVRAAKITRTALIMVGPALADSHGFPDSALYDAAKPHVLRPKAAVIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PVU8</accession>
    <name>A0A1M5PVU8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">4-hydroxybenzoate octaprenyltransferase</fullName>
            <ecNumber evidence="8">2.5.1.39</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">4-HB polyprenyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">ubiA</name>
        <name evidence="9" type="ORF">SAMN05444003_1876</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>4-hydroxybenzoate + all-trans-octaprenyl diphosphate = 4-hydroxy-3-all-trans-octaprenylbenzoate + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:27782"/>
            <dbReference type="ChEBI" id="CHEBI:1617"/>
            <dbReference type="ChEBI" id="CHEBI:17879"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57711"/>
            <dbReference type="EC" id="2.5.1.39"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="8">Cofactor biosynthesis; ubiquinone biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell inner membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the UbiA prenyltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.39" evidence="8"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05822.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900665.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1876"/>
    <dbReference type="EnsemblBacteria" id="SHH05822">
        <property type="protein sequence ID" value="SHH05822"/>
        <property type="gene ID" value="SAMN05444003_1876"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00232"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002083">
        <property type="term" value="F:4-hydroxybenzoate decaprenyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047293">
        <property type="term" value="F:4-hydroxybenzoate nonaprenyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008412">
        <property type="term" value="F:4-hydroxybenzoate octaprenyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006744">
        <property type="term" value="P:ubiquinone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd13959">
        <property type="entry name" value="PT_UbiA_COQ2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.357.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01635">
        <property type="entry name" value="UbiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006370">
        <property type="entry name" value="HB_polyprenyltransferase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039653">
        <property type="entry name" value="Prenyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000537">
        <property type="entry name" value="UbiA_prenyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030470">
        <property type="entry name" value="UbiA_prenylTrfase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044878">
        <property type="entry name" value="UbiA_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11048">
        <property type="entry name" value="PTHR11048"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01040">
        <property type="entry name" value="UbiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01474">
        <property type="entry name" value="ubiA_proteo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00943">
        <property type="entry name" value="UBIA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 8" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="2 8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8 9" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="8" id="KW-0831">Ubiquinone biosynthesis</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="41"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="163"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="189"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="236"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="262"/>
            <end position="281"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01635"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH05822.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="318" mass="35149" checksum="952E9377169595C3" modified="2017-03-15" version="1">MTEPLETPDGTVADSTGNWVDTMAPAMSRPYLRLSRADRPIGTWLLFVPCLWGLALACLSTGRFGTYDIWTFVGCGIGAFLMRGAGCTWNDITDRDFDGSVERTRSRPIPSGQVSVRGAVIWMAVQALLAFFILITFYDTAIFLGVIALVPVLIYPFAKRFTWWPQVFLGIAFNWGALLAWVAHTDRLGVAPVILYAAGIAWTLFYDTIYAHQDAEDDALIGIKSTARLFGEKSRVWLRGFLTATVCLMGLAVLFAAQDRSILALLVALGGPWALGWHLTWQLAQFDPKDGEGLLKIFRSNRNAGLLPLPFFAAAWFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PWJ2</accession>
    <name>A0A1M5PWJ2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Aa3 type cytochrome c oxidase subunit IV</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1886</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06056.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900887.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1886"/>
    <dbReference type="EnsemblBacteria" id="SHH06056">
        <property type="protein sequence ID" value="SHH06056"/>
        <property type="gene ID" value="SAMN05444003_1886"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036596">
        <property type="entry name" value="Cyt-C_aa3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012422">
        <property type="entry name" value="Cyt_c_oxidase_su4_bac-aa3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07835">
        <property type="entry name" value="COX4_pro_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81469">
        <property type="entry name" value="SSF81469"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="domain" description="COX4_pro_2" evidence="2">
        <location>
            <begin position="4"/>
            <end position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07835"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH06056.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="44" mass="4834" checksum="60953DA0534E3CB0" modified="2017-03-15" version="1">MAEHKHGEMDISVQEKTFEGFISMTTKATIVILLILVFLALVGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PYS0</accession>
    <name>A0A1M5PYS0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1921</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06691.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900702.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1921"/>
    <dbReference type="EnsemblBacteria" id="SHH06691">
        <property type="protein sequence ID" value="SHH06691"/>
        <property type="gene ID" value="SAMN05444003_1921"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016156">
        <property type="entry name" value="FAD/NAD-linked_Rdtase_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028202">
        <property type="entry name" value="Reductase_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14759">
        <property type="entry name" value="Reductase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55424">
        <property type="entry name" value="SSF55424"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="1">
        <location>
            <begin position="4"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="domain" description="Reductase_C" evidence="2">
        <location>
            <begin position="318"/>
            <end position="401"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH06691.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="403" mass="42991" checksum="80F13E8B5436F672" modified="2017-03-15" version="1">MQHFVVVGAGQAGSSLVSKLRSEGFEGKITLIGAEAEPPYQRPPLSKAYLLGEMPKDRLYLRPESFYADQNIELMLDTRAVDLDAENKVLTLSTGEELTYDALALTTGSHPRTLPAAIGGTLDGVMTVRDLRDADTMAPYFAAGKKALIIGGGYIGLEAAAVAAKRGVDATLVEMADRILQRVAAPQTSDFFRDLHTKHGVKVLEGVGLDTLLGDEHVSGAKLTDGSEIDIDFAIVGVGIIPATALAEAGNLDIENGIKTDAHARTSDPAIWAAGDCATCHFKGSDIRIESVGNAIDQAEVAAKNMLGLDVPYQPKPWFWSDQYDCKLQIAGLNMGYTDVVVRAGDDGAVSHWYYEGGTLIAVDAMNDARNYMIGKRLIEAGKSPAPDVIADPDTNMKALLRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q076</accession>
    <name>A0A1M5Q076_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Molybdopterin synthase subunit MoaD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1964</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07525.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900738.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1964"/>
    <dbReference type="EnsemblBacteria" id="SHH07525">
        <property type="protein sequence ID" value="SHH07525"/>
        <property type="gene ID" value="SAMN05444003_1964"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016155">
        <property type="entry name" value="Mopterin_synth/thiamin_S_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003749">
        <property type="entry name" value="ThiS/MoaD-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02597">
        <property type="entry name" value="ThiS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54285">
        <property type="entry name" value="SSF54285"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH07525.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="81" mass="8914" checksum="85B49565AECB0603" modified="2017-03-15" version="1">MDVVYFAWVRERIGLPKETIETSAQTVADLVAELSSKEERYAAAFADTSALRVALDQELSDFDAQLDGVREVAFFPPMTGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q0A5</accession>
    <name>A0A1M5Q0A5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1967</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07594.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1967"/>
    <dbReference type="EnsemblBacteria" id="SHH07594">
        <property type="protein sequence ID" value="SHH07594"/>
        <property type="gene ID" value="SAMN05444003_1967"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH07594.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="261" mass="27907" checksum="F564A7736522C33B" modified="2017-03-15" version="1">MPQMRALVTGGAARLGRAMALFLGGRGYDVAVHFATSAEQAEATVDEIKAQGVQAVSVQADLLQEGQTETLIQRATDALGGPLSALINNASIFEYDTLGTATRESWDRHIESNLRAPFVLTQRFADQVPDPETDENGEPEAQGLIVNMIDQRVHKLTPEFMSYTLAKAGLWTLTQTSAQALAPKVRVNGIGPGPTLKGSAQSEEQFARQRKATLLMRGANPADITAALGYLLDAPSVTGQMINVDGGQHLAWQTPDVVGLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q2H3</accession>
    <name>A0A1M5Q2H3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sugar phosphate permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1990</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07971.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900754.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1990"/>
    <dbReference type="EnsemblBacteria" id="SHH07971">
        <property type="protein sequence ID" value="SHH07971"/>
        <property type="gene ID" value="SAMN05444003_1990"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="43"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="73"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="97"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="138"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="161"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="203"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="237"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="268"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="294"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="325"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="354"/>
            <end position="375"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH07971.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="388" mass="40429" checksum="BF79197361D8E143" modified="2017-03-15" version="1">MIDAKRTTLLTMLIFSLHPVAFGAWIALIPVVKANLGLNKAELAIALLGLPVATVPSLQIASRVMPRLGPRRILRVMFPIQGAVLILPFMATSQATLFLALMMFGVAMAFMQVCLNVYAGRLEKQLGVIVMNRCHGAWALGLMFGSLLVVWLAFLDDGLRLISIGILSGVAGAVVASLLPQLGSEAAQASPPRRSFKQVPKTLYLISLLTLAVAMTEGAMADWGAVYMSERLPADSLYIGMGVTVFAGALALGRLCGDFVNMRSGPVVLARGSIICAIAGLLCLVLPLPLGFAFVGFGLVGLGASVGFPLGVSAAAALDDEYEGANIAIMSSISIGGFLVGPPAIGFLAEAFNLRVGLAALIPGLLAGIAIAGCLRPVNRPKKPIHSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q366</accession>
    <name>A0A1M5Q366_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Penicillin-insensitive murein endopeptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2016</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08488.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900776.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2016"/>
    <dbReference type="EnsemblBacteria" id="SHH08488">
        <property type="protein sequence ID" value="SHH08488"/>
        <property type="gene ID" value="SAMN05444003_2016"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030288">
        <property type="term" value="C:outer membrane-bounded periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1380.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009045">
        <property type="entry name" value="Hedgehog_sig/DD-Pept_Zn-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005073">
        <property type="entry name" value="Peptidase_M74"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03411">
        <property type="entry name" value="Peptidase_M74"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF018455">
        <property type="entry name" value="MepA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55166">
        <property type="entry name" value="SSF55166"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013042137" evidence="3">
        <location>
            <begin position="22"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="242"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="2">
        <location>
            <begin position="265"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH08488.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="297" mass="32103" checksum="2F0CF765243C10D5" modified="2017-03-15" version="1">MGRFAAVIAFLLALAACQGDSDTTSISTQNSNDTRVAKNLFGAADVGSQQRAQAFGGYSRGCMAGGVELPETGPTWQAMRLSRNRNWGKPVLIDYVQDLSRFAATQPGWEGLYVGDLSQPRGGPMLSGHASHQIGLDADIWMLPPDRLNLTRDERENLSSISTRRTGGAYTNSNWTPQHEAILKAAASDPRVARIFVFAGAKVAMCNSATGDRSWLNKIRPWWGHHYHFHVRLNCPAGDANCTNQPPPPPGDGCDDAQGWVDRILNPPPPDPNPRPPRGPIIMAQLPGQCAGVLTSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q4D1</accession>
    <name>A0A1M5Q4D1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2049</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09127.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900807.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2049"/>
    <dbReference type="EnsemblBacteria" id="SHH09127">
        <property type="protein sequence ID" value="SHH09127"/>
        <property type="gene ID" value="SAMN05444003_2049"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046163">
        <property type="entry name" value="DUF6165"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19662">
        <property type="entry name" value="DUF6165"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH09127.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="131" mass="15083" checksum="A9CFE41DD1EF320D" modified="2017-03-15" version="1">MDEILIPISPGELIDKLTILRIKSEKLTDPSKLENVRFEQRRLQLIADDVLPTDETLSTLWAELYEVNVDLWTIEEDIRKFEDQKDFGAAFIALARAVYVTNDRRAELKKQINTLLGSTLVEEKSYTSCLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q574</accession>
    <name>A0A1M5Q574_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF4375 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2057</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09284.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900814.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH09284">
        <property type="protein sequence ID" value="SHH09284"/>
        <property type="gene ID" value="SAMN05444003_2057"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025402">
        <property type="entry name" value="DUF4375"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14300">
        <property type="entry name" value="DUF4375"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4375" evidence="1">
        <location>
            <begin position="75"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14300"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH09284.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="428" mass="46400" checksum="A77D65B03D22B95A" modified="2017-03-15" version="1">MLKALLNKAKTAFESKSESPKPIAAQPKYQQHLDLIVVPESAMDAFPDDPNPLVDAMVNYVNFLTQQAQFNRFEISAEAIQAYHVDYYLAQVKNGGHAQFVGNSGANLAYTLADVIDGLKAMKAFDHLALAEKMSKWVAENPEDADAQTGAEGGIAPELAALDNPFYELEKAHPLRPIMAEWIANLEVLQAVDDRMMPRVLQGIKTLNPNLRTRQSKTHIAKLVNQLSNPLFLGLGMAGAKAAKIEPLLQVGTGSNRNVDGQNTMTWFVQTTEGKRFGLSTETGVELREYVDPNGETLPVSLKDTSLDHITSFVPVEVGNVVNSVTHAEIDATKAVCAKLNAPIAIEMLLAKLPEDTEADYVSVRSTGQSLEDQLGASIYVVCNQGSVAYSAIVEESGARLLTEPSHDLLVQVSAVEISEFIEGLQAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-06-02" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QIY5</accession>
    <name>A0A1M5QIY5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Mobilisation protein (MobC)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2134</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH13759.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH13759">
        <property type="protein sequence ID" value="SHH13759"/>
        <property type="gene ID" value="SAMN05444003_2134"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008687">
        <property type="entry name" value="MobC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05713">
        <property type="entry name" value="MobC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MobC" evidence="2">
        <location>
            <begin position="102"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="25"/>
            <end position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05713"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH13759.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="156" mass="16649" checksum="207E35F7D1B972C6" modified="2017-03-15" version="1">MNATDPHEEQRARLPTDYIGGTCEGRQASPSNPNQTRASGVKESLSETVIFRCTPSEKAALVAKARAASLPNATLMREALGLTEARRRKPVPRVDPKLTFAIARVGGNLNQLSRWINGAVKSGRASQIDALKVATQLVVIERQLAQIVAAHAGGDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QKE9</accession>
    <name>A0A1M5QKE9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2157</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900971.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2157"/>
    <dbReference type="EnsemblBacteria" id="SHH14220">
        <property type="protein sequence ID" value="SHH14220"/>
        <property type="gene ID" value="SAMN05444003_2157"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008146">
        <property type="term" value="F:sulfotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005331">
        <property type="entry name" value="Sulfotransferase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03567">
        <property type="entry name" value="Sulfotransfer_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH14220.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="475" mass="53645" checksum="74C098A915B928D1" modified="2017-03-15" version="1">MAKFDYFVVFAEMRTGSNLLEANLNRFDDLACLGEAFNSHFIGYPKSEAVLGVTLSQREDNPHLLLDAIQVAVGTNGFRYFHDHDPRILDRLLADQRCGKVILTRNPIESYVSLKIATQTDQWKMTNAKHEKSTQISFDLEEFADHLKAQQDFQLKIQKAMQVSGQSAFYIGYDDLHDIDVINGLAQFLGSHIQLDALDDKLKKQNPAPLSDKVSNYDAMKAGLAKLDRFDLSRTPNFEPWRGPMVTKYVAAPKSNLIYLPIKSGPNAAVLSWLAQLEGVSTDELSSGLKQGEMRQWMQDHAGHRRFTVVRHPVARAHAAFCQHFLEQAGGGYAEIRQTLKSAYGLKLPKRELRPETDKQYDMEAHAKAFHGFLKFVKNNLNAQTSLRVDPAWASQVALVQGMNEFAPIDLILREDQLQMDLPLLLSDAGDVELLGETDPYADRLAAIYSSKIEKAARNAYARDYFTFGFEDWRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QM24</accession>
    <name>A0A1M5QM24_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Peptide/nickel transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2188</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14849.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2188"/>
    <dbReference type="EnsemblBacteria" id="SHH14849">
        <property type="protein sequence ID" value="SHH14849"/>
        <property type="gene ID" value="SAMN05444003_2188"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="37"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="80"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="110"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="189"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="225"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="253"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="318"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="359"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="185"/>
            <end position="383"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH14849.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="400" mass="42939" checksum="5B5E06472F849D67" modified="2017-03-15" version="1">MSTLLWLVTVLGGIAVAGWVFRFAGQTVTGNAPRFRDMPYGVAFGYVLGVSILAWAIWYYFQPVTTEQGLPNAGVMFFRWGVQGLIIAMIAAYVFRFLGRLIGTANSKKLFRAMPLTAAFGILTIIIYAIFAIFADAIAPYGQEQIFEQANVLPGGDPALGGDPAHPLGTDQIGRDILSRLIYGAQNTVGIAFATTCLAFALGATFGLLAAVLGGWLDQLLSRAVDVLMAIPSLIFALLLMTIASVWASEWGIPLTIFMVVIIAVIDSTRVFRLARAVGVNIVVMDYIEAAKLRGEGMGHLIFREILPNATAPLLAEFGLRFCFVFLTIAALSFLGVGIQPPLADWGTMVRDLAPFINFAAFAPLAAVTPLLAAGAIALLTVAVNFVVDWMLHRSSGLKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QM59</accession>
    <name>A0A1M5QM59_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Ubiquinone biosynthesis O-methyltransferase</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">2-polyprenyl-6-hydroxyphenol methylase</fullName>
            <ecNumber evidence="1">2.1.1.222</ecNumber>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">3-demethylubiquinone 3-O-methyltransferase</fullName>
            <ecNumber evidence="1">2.1.1.64</ecNumber>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">ubiG</name>
        <name evidence="2" type="ORF">SAMN05444003_2191</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 3-(all-trans-polyprenyl)benzene-1,2-diol + S-adenosyl-L-methionine = a 2-methoxy-6-(all-trans-polyprenyl)phenol + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:31411"/>
            <dbReference type="Rhea" id="RHEA-COMP:9550"/>
            <dbReference type="Rhea" id="RHEA-COMP:9551"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:62729"/>
            <dbReference type="ChEBI" id="CHEBI:62731"/>
            <dbReference type="EC" id="2.1.1.222"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 3-demethylubiquinol + S-adenosyl-L-methionine = a ubiquinol + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:44380"/>
            <dbReference type="Rhea" id="RHEA-COMP:9566"/>
            <dbReference type="Rhea" id="RHEA-COMP:10914"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17976"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:84422"/>
            <dbReference type="EC" id="2.1.1.64"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; ubiquinone biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the methyltransferase superfamily. UbiG/COQ3 family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.222" evidence="1"/>
    <dbReference type="EC" id="2.1.1.64" evidence="1"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14911.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901024.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2191"/>
    <dbReference type="EnsemblBacteria" id="SHH14911">
        <property type="protein sequence ID" value="SHH14911"/>
        <property type="gene ID" value="SAMN05444003_2191"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00232"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102208">
        <property type="term" value="F:2-polyprenyl-6-hydroxyphenol methylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008425">
        <property type="term" value="F:2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008689">
        <property type="term" value="F:3-demethylubiquinone-9 3-O-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006744">
        <property type="term" value="P:ubiquinone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00472">
        <property type="entry name" value="UbiG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010233">
        <property type="entry name" value="UbiG_MeTrfase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01983">
        <property type="entry name" value="UbiG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="1 2" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0830">Ubiquinone</keyword>
    <keyword evidence="1" id="KW-0831">Ubiquinone biosynthesis</keyword>
    <feature type="binding site" evidence="1">
        <location>
            <position position="41"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="72"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="93"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="136"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH14911.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="249" mass="27663" checksum="29F8A130EED4779F" modified="2017-03-15" version="1">MQAEATNTVDPSEIAKFEAMAAEWWDLEGKFKPLHMMNPVRLEYITTQVAAEFDRDLDDPLPFKGLRILDIGCGGGLLCEPMARLGATVVGADAAERNIPVARIHAEQSGLEIDYRHTTAEAMASAGEQFDVVLNMEVVEHVADPQGYLTACQQLLRPGGLHLCSTINRNPKSFAMAIVGAEWVMRWLPKGTHEWSKFITPDELFDLMTKAGMEPVDRKGYVFNFARFTWSISDRDLSVNYVTAATKPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QMG1</accession>
    <name>A0A1M5QMG1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 9">Argininosuccinate synthase</fullName>
            <ecNumber evidence="2 9">6.3.4.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8 9">Citrulline--aspartate ligase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">argG</name>
        <name evidence="10" type="ORF">SAMN05444003_2208</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>ATP + L-aspartate + L-citrulline = 2-(N(omega)-L-arginino)succinate + AMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:10932"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57472"/>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.3.4.5"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 9">Amino-acid biosynthesis; L-arginine biosynthesis; L-arginine from L-ornithine and carbamoyl phosphate: step 2/3.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the argininosuccinate synthase family. Type 1 subfamily.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.5" evidence="2 9"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15294.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901055.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2208"/>
    <dbReference type="EnsemblBacteria" id="SHH15294">
        <property type="protein sequence ID" value="SHH15294"/>
        <property type="gene ID" value="SAMN05444003_2208"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00113"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004055">
        <property type="term" value="F:argininosuccinate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006526">
        <property type="term" value="P:arginine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01999">
        <property type="entry name" value="Argininosuccinate_Synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00005">
        <property type="entry name" value="Arg_succ_synth_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001518">
        <property type="entry name" value="Arginosuc_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018223">
        <property type="entry name" value="Arginosuc_synth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023434">
        <property type="entry name" value="Arginosuc_synth_type_1_subfam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024074">
        <property type="entry name" value="AS_cat/multimer_dom_body"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11587">
        <property type="entry name" value="PTHR11587"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00764">
        <property type="entry name" value="Arginosuc_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69864">
        <property type="entry name" value="SSF69864"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00032">
        <property type="entry name" value="argG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00564">
        <property type="entry name" value="ARGININOSUCCIN_SYN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00565">
        <property type="entry name" value="ARGININOSUCCIN_SYN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 9" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="3 9" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="7 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="6 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="10"/>
            <end position="18"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="37"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="88"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="93"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="118"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="120"/>
        </location>
        <ligand>
            <name>L-aspartate</name>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="124"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="125"/>
        </location>
        <ligand>
            <name>L-aspartate</name>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="128"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="179"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="188"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="264"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="276"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012286"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00029916"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH15294.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="406" mass="44890" checksum="ADCA2B24EC9D87C4" modified="2017-03-15" version="1">MSAPKKVVLAYSGGLDTSIILKWLQTEYGCEVVTFTADLGQGEELEPARAKAEMMGAKAIYIEDLREEFVKDFVFPMFRANALYEGLYLLGTSIARPLISKRLVEIAEAEGANAVAHGATGKGNDQVRFELAAYALNPDIKVIAPWRDWDLTSRTKLLEFAEQNQIPVAKDKRGEAPFSVDANLLHTSSEGKVLEDPAEMAPDYVYQRTVNPEDAPNEAEYIEITFEKGDAVAINGEVMSPATILTKLNELGGKHGVGRLDLVENRFVGMKSRGIYETPGGTVLLEAHRGIEQITLDSGAGHLKDSIMPRYAELIYNGFWFSPEREMLQALIDKSQEHVSGTVRIKLYKGSATTVARWSDHSLYSEAHVTFEDDAGAYDQTDAKGFIQLNALRLKLLAARDRRLKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QQX0</accession>
    <name>A0A1M5QQX0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2244</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15993.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901114.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2244"/>
    <dbReference type="EnsemblBacteria" id="SHH15993">
        <property type="protein sequence ID" value="SHH15993"/>
        <property type="gene ID" value="SAMN05444003_2244"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002575">
        <property type="entry name" value="Aminoglycoside_PTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01636">
        <property type="entry name" value="APH"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="APH" evidence="1">
        <location>
            <begin position="22"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="domain" description="APH" evidence="1">
        <location>
            <begin position="165"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH15993.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="326" mass="37416" checksum="14B032719911E151" modified="2017-03-15" version="1">MSELRLNPLKFLNEAGFEPTDLRKLPSDASQRTYHKFSSGKDRLILMDAPPSSNPKTPTFVDVTEHLLAADLVAPEILGFDLDQGYLILRDLGKRTARDVLQSEPFREVEVYKEILNALLKVETLIIPDLPVLTNSTAGEMTTIAAISYADALELGAEISALVEGYFEKYCDTERTLALRDFHVENVIWRDDQTSDRKVGLLDYQDAFYAPKGYDLISLLRDVRGRVSLETQGKMTALYKEHYDLTHDFDLQLHCLAIQRNLRILGVFGRLIREEGKARYLQFLSRTWELLMEDLAPPEFSELRDLVFEHFPKPTERLFASWEIKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QWT0</accession>
    <name>A0A1M5QWT0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2367</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18542.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH18542">
        <property type="protein sequence ID" value="SHH18542"/>
        <property type="gene ID" value="SAMN05444003_2367"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007657">
        <property type="entry name" value="Glycosyltransferase_61"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04577">
        <property type="entry name" value="Glyco_transf_61"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="1" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH18542.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="352" mass="40131" checksum="DE0E08CDC36A1C05" modified="2017-03-15" version="1">MGKRQGQITEDLPEFLGKSAWLITAQSFLLDRFTQDCEHILLAPKNVPGGKMTYSLTQGETKSKIGKGRMGRLLPSRLKRKDINDRIIFDCRRESPQNWAHFLNMHLPIFFHISERLSLQWDEVLLVLPANTPTYITKAAVLFGLETLLTDETLIGTYVDYEIDPWTSMRKSRVDWVSTDAVSNVVDAICDTGAPMPPKVFLARRNTRAIQNQTEVEEFLSSLGYVTIYPEDLTVSDQFRLFREAEEMVAVHGAGLAPLLFQKRNSNLKRLVEIMPVGHMTEVFHVIAQQVGCDWIGARGRIKSTYVPKIYGDMNVFSEYSLDDFEVDIRSLKEAITLIRNPSEDRNARAQM</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R279</accession>
    <name>A0A1M5R279_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, HxlR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2437</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901525.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2437"/>
    <dbReference type="EnsemblBacteria" id="SHH19903">
        <property type="protein sequence ID" value="SHH19903"/>
        <property type="gene ID" value="SAMN05444003_2437"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002577">
        <property type="entry name" value="HTH_HxlR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01638">
        <property type="entry name" value="HxlR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51118">
        <property type="entry name" value="HTH_HXLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH hxlR-type" evidence="1">
        <location>
            <begin position="7"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH19903.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="121" mass="13961" checksum="1D3E6015612CF871" modified="2017-03-15" version="1">MLDDERCPDCKRINEVLSRVGDRWSVLVVISLAEYGTMRFNELKRNLGISQRMLSLTLKELERDGLVNRTYHPTIPPKVEYNLTEMGLSFREPVSALGFWALENLSRIDAARETYDEAVVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R2W3</accession>
    <name>A0A1M5R2W3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2458</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH20339.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901439.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH20339">
        <property type="protein sequence ID" value="SHH20339"/>
        <property type="gene ID" value="SAMN05444003_2458"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="44"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="69"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="93"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH20339.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="131" mass="14557" checksum="460875B5F6F2C29A" modified="2017-03-15" version="1">MRSVAFVAAILAGYAAISFGLLKILWIKFGAHFYWSDHSHNVQAPLGMDAVLILALIIAGLSMISLRHVIPASLTVVGILIYEYLFLHDEVHSLIQVLFALGLISGQLIAFFLNTMVAIEYDRRFKGRIVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RAB5</accession>
    <name>A0A1M5RAB5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Integrase core domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2467</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23108.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH23108">
        <property type="protein sequence ID" value="SHH23108"/>
        <property type="gene ID" value="SAMN05444003_2467"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13683">
        <property type="entry name" value="rve_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="2">
        <location>
            <begin position="1"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="44"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH23108.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="69" mass="8254" checksum="7A3703F9961BB7FD" modified="2017-03-15" version="1" fragment="single">WENGYCESFNARLRDELLNGEVFYSLREAQILIEEWRKHYNTKRPHSALGYRPPAPETIVPMEPRPIMH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RAT0</accession>
    <name>A0A1M5RAT0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">VPLPA-CTERM protein sorting domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2468</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901536.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH23136">
        <property type="protein sequence ID" value="SHH23136"/>
        <property type="gene ID" value="SAMN05444003_2468"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022472">
        <property type="entry name" value="VPLPA-CTERM"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03370">
        <property type="entry name" value="VPLPA-CTERM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012725604" evidence="1">
        <location>
            <begin position="23"/>
            <end position="227"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH23136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="227" mass="22655" checksum="37C68D3CA9A58EB3" modified="2017-03-15" version="1">MKTKSILAAAAICTLPFTTAQAAVIDFTEGPTGSPALSGSILGLDYVVTGSPSAPNNNEGFGGAAPTNSLGLDFVADGFGVDNDEITATSDSITVSFFEAGTNNLVEVVLQAFAFLDLFPNSNGSGETGIVTASGGGTDSVSFDAGANGGYAELTGLTLIGSSFVFTSGLTNDNAGQADGALAGIDVVLRPDIVGEPNPVPLPAAGWMLLAGVGGMTIVGRRRKSKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RCE4</accession>
    <name>A0A1M5RCE4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Glycosyltransferase, GT2 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2502</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23848.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901588.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH23848">
        <property type="protein sequence ID" value="SHH23848"/>
        <property type="gene ID" value="SAMN05444003_2502"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027791">
        <property type="entry name" value="Galactosyl_T_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02709">
        <property type="entry name" value="Glyco_transf_7C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="2">
        <location>
            <begin position="5"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_transf_7C" evidence="3">
        <location>
            <begin position="180"/>
            <end position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02709"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH23848.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="277" mass="31382" checksum="E1408F74183DECDC" modified="2017-03-15" version="1">MKTELIITTYNSVRALELCLVSVARQSLLPDTICIADDGSGPETKEFIDGLGATYPNLTFRHVWHEDQGFEKCRILNKAIESSEAEFLFFLDGDVMIHPNFLKRHFDLAQRGRFSTGSLIRLDETATEAMTSEIVTSGDAFDRSWLRENRAIDRLGTWLKTMPFPFAIQNLLDVTTPVQKALCGANWSAFREDILKVNGFDETLKYGGLDKEFGIRLINAGVKGRHLRYTAPLVHLDHPRGYRDPEKVKRHKAMIKEVRTSGRSWTEDGIIKGPKPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RKL4</accession>
    <name>A0A1M5RKL4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 6">GTPase Era</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">era</name>
        <name evidence="12" type="ORF">SAMN05444003_2641</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 8 9">Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Era GTPase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26785.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901803.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2641"/>
    <dbReference type="EnsemblBacteria" id="SHH26785">
        <property type="protein sequence ID" value="SHH26785"/>
        <property type="gene ID" value="SAMN05444003_2641"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070181">
        <property type="term" value="F:small ribosomal subunit rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042274">
        <property type="term" value="P:ribosomal small subunit biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04163">
        <property type="entry name" value="Era"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00367">
        <property type="entry name" value="GTPase_Era"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030388">
        <property type="entry name" value="G_ERA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005662">
        <property type="entry name" value="GTP-bd_Era"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004044">
        <property type="entry name" value="KH_dom_type_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009019">
        <property type="entry name" value="KH_sf_prok-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42698">
        <property type="entry name" value="PTHR42698"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07650">
        <property type="entry name" value="KH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54814">
        <property type="entry name" value="SSF54814"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00436">
        <property type="entry name" value="era"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51713">
        <property type="entry name" value="G_ERA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50823">
        <property type="entry name" value="KH_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 6 8" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 6 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0690">Ribosome biogenesis</keyword>
    <keyword evidence="4 6 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="6" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="Era-type G" evidence="11">
        <location>
            <begin position="5"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="domain" description="KH type-2" evidence="10">
        <location>
            <begin position="205"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="region of interest" description="G1" evidence="8">
        <location>
            <begin position="13"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="region of interest" description="G2" evidence="8">
        <location>
            <begin position="39"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="region of interest" description="G3" evidence="8">
        <location>
            <begin position="60"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="region of interest" description="G4" evidence="8">
        <location>
            <begin position="124"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="region of interest" description="G5" evidence="8">
        <location>
            <begin position="153"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="13"/>
            <end position="20"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="60"/>
            <end position="64"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="124"/>
            <end position="127"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00020484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00367"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003761"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51713"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHH26785.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="303" mass="33903" checksum="5E6F2FBED0519C73" modified="2017-03-15" version="1">MTDTRCGFVALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVALEGDAQLVFVDTPGLFRPRRRLDRAMVAAAWGGAADADIVVLMVEAHRGVTAGVKAILESLNERTDNAKIALAINKIDKVPTEKLLALTKELNEAFDFMETFMISAEKGHGCEDLRAWLAKELPEGPWLYPEDQIADLPLRMIAAEMTREKLTLRLHQELPYQLTVETENWEERKDGSAKIDQLIYVMRDGHKGIVLGNKGETIKAVSKAAREELEEFLGRRVHLFLQVKVRPNWLEDAERYSEMGLDFKDGNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RMK6</accession>
    <name>A0A1M5RMK6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">50S ribosomal protein L1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">rplA</name>
        <name evidence="10" type="ORF">SAMN05444003_2674</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.</text>
    </comment>
    <comment type="function">
        <text evidence="8">Protein L1 is also a translational repressor protein, it controls the translation of the L11 operon by binding to its mRNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 8 9">Belongs to the universal ribosomal protein uL1 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH27554.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901853.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2674"/>
    <dbReference type="EnsemblBacteria" id="SHH27554">
        <property type="protein sequence ID" value="SHH27554"/>
        <property type="gene ID" value="SAMN05444003_2674"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006417">
        <property type="term" value="P:regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00403">
        <property type="entry name" value="Ribosomal_L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.790">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01318_B">
        <property type="entry name" value="Ribosomal_L1_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005878">
        <property type="entry name" value="Ribosom_L1_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002143">
        <property type="entry name" value="Ribosomal_L1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023674">
        <property type="entry name" value="Ribosomal_L1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028364">
        <property type="entry name" value="Ribosomal_L1/biogenesis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016095">
        <property type="entry name" value="Ribosomal_L1_3-a/b-sand"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023673">
        <property type="entry name" value="Ribosomal_L1_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00687">
        <property type="entry name" value="Ribosomal_L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002155">
        <property type="entry name" value="Ribosomal_L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56808">
        <property type="entry name" value="SSF56808"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01169">
        <property type="entry name" value="rplA_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01199">
        <property type="entry name" value="RIBOSOMAL_L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 8" id="KW-0678">Repressor</keyword>
    <keyword evidence="7 8 9" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="6 8 9" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5 8" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 8" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="4 8" id="KW-0810">Translation regulation</keyword>
    <keyword evidence="8" id="KW-0820">tRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01318"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU000659"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH27554.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="233" mass="23896" checksum="11218ED0CCBF65BB" modified="2017-03-15" version="1">MAKVGKRTAAAREAFAGKENVTVSEAVALVKGNATAKFDETVEISMVLGIDPRHADQMVRGTVTLPNGTGKTVRVAVFARGDKADEAKAAGADIVGAEDLMETIQGGTIDFDRCIATPDMMGIVGRLGKVLGPRNLMPNPRVGTVTPDVKAAVEAAKGGEVQFKAEKAGVVHAGIGKASFGAQQIEENVKAFVDAVSKAKPTGAKGTYMKKISLTSTMGPGVSVAVDDATGNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RN55</accession>
    <name>A0A1M5RN55_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 6 7">50S ribosomal protein L10</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rplJ</name>
        <name evidence="8" type="ORF">SAMN05444003_2675</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 6">Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Part of the ribosomal stalk of the 50S ribosomal subunit. The N-terminus interacts with L11 and the large rRNA to form the base of the stalk. The C-terminus forms an elongated spine to which L12 dimers bind in a sequential fashion forming a multimeric L10(L12)X complex.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the universal ribosomal protein uL10 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH27580.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901856.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2675"/>
    <dbReference type="EnsemblBacteria" id="SHH27580">
        <property type="protein sequence ID" value="SHH27580"/>
        <property type="gene ID" value="SAMN05444003_2675"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070180">
        <property type="term" value="F:large ribosomal subunit rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd05797">
        <property type="entry name" value="Ribosomal_L10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1730">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00362">
        <property type="entry name" value="Ribosomal_L10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022973">
        <property type="entry name" value="Ribosomal_L10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043141">
        <property type="entry name" value="Ribosomal_L10-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002363">
        <property type="entry name" value="Ribosomal_L10_eubac_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001790">
        <property type="entry name" value="Ribosomal_L10P"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11560">
        <property type="entry name" value="PTHR11560"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00466">
        <property type="entry name" value="Ribosomal_L10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160369">
        <property type="entry name" value="SSF160369"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01109">
        <property type="entry name" value="RIBOSOMAL_L10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 6 8" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="6" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002633"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00021186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00362"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH27580.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="170" mass="17521" checksum="D3A74016151F58AB" modified="2017-03-15" version="1">MDRAQKEQLVEELGQVFESSGVVVVSHYEGMTVAEMQDLRAKMREVGGSVRVTKNKLAKIALEGKPCASIAEYLSGMTVLAYSEDPVAAAKVVDGYAKENDKLVILGGAMGDQALDVAGVKAVAAMPSREELIASIVGCIGAPASNIAGAIGAPASNIASILSTIEEKAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RN58</accession>
    <name>A0A1M5RN58_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ATP-dependent RNA helicase DeaD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2681</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the DEAD box helicase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH27702.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901866.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2681"/>
    <dbReference type="EnsemblBacteria" id="SHH27702">
        <property type="protein sequence ID" value="SHH27702"/>
        <property type="gene ID" value="SAMN05444003_2681"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003724">
        <property type="term" value="F:RNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005580">
        <property type="entry name" value="DbpA/CsdA_RNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000629">
        <property type="entry name" value="RNA-helicase_DEAD-box_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03880">
        <property type="entry name" value="DbpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00039">
        <property type="entry name" value="DEAD_ATP_HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 3 7" id="KW-0347">Helicase</keyword>
    <keyword evidence="1 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="5">
        <location>
            <begin position="31"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="6">
        <location>
            <begin position="231"/>
            <end position="380"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="530"/>
            <end position="685"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="546"/>
            <end position="603"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="624"/>
            <end position="638"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU000492"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH27702.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="685" mass="73703" checksum="2CC4B41878963D2B" modified="2017-03-15" version="1">MQDFSGLPHTLSTALSKKGYSGLTPVQQAVTDEGLRGSDLLVSAQTGSGKTVGFGLAMAGDLLDEDGRFGRPAAPQAAVIAPTRELALQVRREFDWLFGEAGIVTASAVGGMDARTERRAIERGAHVIVATPGRLRDHIARGVIDMSDLKTVVLDEADEMLDMGFSEDLEFILDHTPESRRTLMFSATVPHGIAKLAQTYQNEDAERLKVGSAEKQHSDISYSALTVAPSDIEKAIINLLRFHDAQTAIVFANTRSMVARLTAKFANRGFSVVSLSGELSQAERTNAMQALRDGRAQVCVATDVAARGIDLPGLELVIHADLPSNVEALLHRSGRTGRAGRKGNSILIVPARQRSKAQRLLKFAKLEADWGTPPSAEEVLAKDEERIASNPALDEPPSAEELAFAARLLDGRTPEQIAAAYLRLYRERHSAPEILGAVPEPGQRKPRDHAEFGPSTWFSMSLGRKDRAEPRWLLPMLCRNAGLSKSAIGAIRVQYQETFVEIASDAVATMKQELGPDLNLEQGAALTELTGKPDFEGSPKGPPADARPPRDGKRGPKPQSFDKPKSAKRPQKPKDDAPVASKPKADVSKMTKKPSDKPASKAKPKHSKPPASKPKSEGRSAAPSTKSTDKKRQKKPFNASDPSKSLGPRKARHKGKGKGAGAPTAKSGRGKGGDARPFRKPSKRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RVH9</accession>
    <name>A0A1M5RVH9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2707</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30038.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901960.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH30038">
        <property type="protein sequence ID" value="SHH30038"/>
        <property type="gene ID" value="SAMN05444003_2707"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013573">
        <property type="entry name" value="Tscrpt_reg_YcdC_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08362">
        <property type="entry name" value="TetR_C_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="14"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="37"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH30038.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="209" mass="24263" checksum="8A09A2B8D6AAE9B5" modified="2017-03-15" version="1">MNKPATGIQARHREETRERILAAAERVFAEYGYEGASFGRIAQEVNLPKSNVVYYFETKKKLYRLVVEDIFNVWRQAADNIQPDSDPEQALGEYIDTKLELARVRPHGSKVWANEIIQRAPIVQDYLENELRDWTNDRISVIDGWIDRGMIRPINARNLLYAIWATTQHYADFTHQIQTLNDDKELSETQWSETKRAVKDILINGISKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RZB3</accession>
    <name>A0A1M5RZB3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2772</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31514.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902056.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2772"/>
    <dbReference type="EnsemblBacteria" id="SHH31514">
        <property type="protein sequence ID" value="SHH31514"/>
        <property type="gene ID" value="SAMN05444003_2772"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH31514.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="136" mass="15126" checksum="592BC0CE82B138A0" modified="2017-03-15" version="1">MTAGYSGNPLWKKLGLNEGQTVCLMNPPKDYLDLLGEGRPDVSFEYELRTGGAVYHIFSSARAELEHLLSECLASMARDGMIWVSWPKRASKVDTDITEDVIREIALSGILVDVKVCAVDATWSGLKLVIRKELRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RZT9</accession>
    <name>A0A1M5RZT9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">V8-like Glu-specific endopeptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2780</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31671.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2780"/>
    <dbReference type="EnsemblBacteria" id="SHH31671">
        <property type="protein sequence ID" value="SHH31671"/>
        <property type="gene ID" value="SAMN05444003_2780"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043504">
        <property type="entry name" value="Peptidase_S1_PA_chymotrypsin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001314">
        <property type="entry name" value="Peptidase_S1A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001254">
        <property type="entry name" value="Trypsin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018114">
        <property type="entry name" value="TRYPSIN_HIS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00089">
        <property type="entry name" value="Trypsin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00722">
        <property type="entry name" value="CHYMOTRYPSIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00020">
        <property type="entry name" value="Tryp_SPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="SSF50494"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50240">
        <property type="entry name" value="TRYPSIN_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00134">
        <property type="entry name" value="TRYPSIN_HIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009913609" evidence="1">
        <location>
            <begin position="21"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase S1" evidence="2">
        <location>
            <begin position="17"/>
            <end position="235"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH31671.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="269" mass="28900" checksum="A68B5ABA8517A00A" modified="2017-03-15" version="1">MKHVLIAILAWLGAVSVVSAQETDLRTLETGADVRGWEAVGRLDFRDGFCTAAMIRDNLILTAAHCVYTDAGRIRDANEFTFSAGLRSGRAEATRGVHSLVAHPQYEHSPNSIEDKNVAVDIAVLRLDQPIRRARIQPFRIDEQPTQGDQIGVVSYGRGRSEAPSLQEVCSVLGRQTGVVVMTCDVVQGSSGSPVFTLSDGAPRIVSVVSAIAQVGEDKVSLGTSLREPLQTLLSHFASLGPARPGGTQRVMRVGERNDTGAKFVRPSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S024</accession>
    <name>A0A1M5S024_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2786</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31805.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902075.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2786"/>
    <dbReference type="EnsemblBacteria" id="SHH31805">
        <property type="protein sequence ID" value="SHH31805"/>
        <property type="gene ID" value="SAMN05444003_2786"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="38"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="665"/>
            <end position="683"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH31805.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="688" mass="74609" checksum="57D9878A314D1212" modified="2017-03-15" version="1">MTNEIILNPLLPIILIALIAILAGITIGLALYRRLSGWWLRGLAGLVLIGALLNPSLQQEDRAPLSDIILLVVDETASQSISDRSAQNAEAIANIEREVSRLPNTELRISTVADGEGDAGTQLMAALSDAMSEEPQGRIAGAILLTDGRLHDLERTPNMPAPLHALITGQPDDWDRRLVISNAPAFAILGESVSLTLRIEDQGAAPENSGVVPLNISIDGGAPLTFDVAIGRDIELPVNLPHGGMNVLQFEIPTEDGELTGRNNAAVVQINGVRDRLRVLLVSGEPHAGERTWRNLLKADASVDLVHFTILRPPEKQDGVPVNELSLIAFPTRELFLEKIDDFDLIIFDRYRRRGILPSQYLDNVVNYVADGGAVLVAAGPEYGGAESIYRSPLGSIIPGSPTARVFERGYKPLVTDIGERHPVTEGLDTQAVIEEDNPSWGRWFRLVDVEVPNSATTLMSGLDERPLLSLERIGNGRVALLASDHSWLWDRGYEGGGPQAELLRRLAHWMMKEPELEEEALWVEPSGQTMRIIRRTLEESQGSVTVTHPDGTETELTLDQVSPGRFETLWDAPSIGLYRLTNGDEEAVIALGPAAPREFEQTIATDELLLPALDATGGGAVLVSDGDISLRTVRPGRPAAGRGWLGISPREAYETADISIAPLLPAWAFLLLASGLIIGAWVREGRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S119</accession>
    <name>A0A1M5S119_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_2808</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32342.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902104.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2808"/>
    <dbReference type="EnsemblBacteria" id="SHH32342">
        <property type="protein sequence ID" value="SHH32342"/>
        <property type="gene ID" value="SAMN05444003_2808"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 9" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="47"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="8">
        <location>
            <begin position="68"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="7">
        <location>
            <begin position="130"/>
            <end position="313"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH32342.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="313" mass="34140" checksum="0DF3265A25ACB3B7" modified="2017-03-15" version="1">MQRDIEVKWRPPLWLVIACTIVAMLMLPVLALFVLSRLLGVFDFDTSFQIASAGTIAAATIVGWVLWRILLRPITELAGRADDIKTGEAAALAPLDHYGTSEMQALGRAMREMGQVLQDRETVLRSYADHVTHELKSPLTVIQGATELLADPDLPESDRQKMLLNVSDATDHMKKLLDAQRALARAKDPMASGSCRLSDVIDQSDDIVLVRDGMVPLSIDVFEPVATQLIGNARAHGASRIEVALEGDRLTFSDNGPGISSGNKDRIFDPFFTTRRDNGGTGMGLSIVKRMLEAQGASIELADAKKAKFVISF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S1N4</accession>
    <name>A0A1M5S1N4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Repeat domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2816</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32542.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902115.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2816"/>
    <dbReference type="EnsemblBacteria" id="SHH32542">
        <property type="protein sequence ID" value="SHH32542"/>
        <property type="gene ID" value="SAMN05444003_2816"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013517">
        <property type="entry name" value="FG-GAP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028994">
        <property type="entry name" value="Integrin_alpha_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011519">
        <property type="entry name" value="UnbV_ASPIC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13517">
        <property type="entry name" value="FG-GAP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07593">
        <property type="entry name" value="UnbV_ASPIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69318">
        <property type="entry name" value="SSF69318"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012500033" evidence="2">
        <location>
            <begin position="17"/>
            <end position="493"/>
        </location>
    </feature>
    <feature type="domain" description="UnbV_ASPIC" evidence="3">
        <location>
            <begin position="424"/>
            <end position="482"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF07593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH32542.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="493" mass="53504" checksum="8332B68722418A75" modified="2017-03-15" version="1">MYRLALAFFVASPVNAQVAFEDFSDRLIAHEYNGGWEHFVGGGIAVFDCNADGLPDVFAAGGENPASLFVNQGEFEFERRDGLEELGTVGAYPLRLDADDPVDLFVLRVGQNIILKGRGDCEFEDATNDFSIPANDRWSTAFSAWWEDGAELPTLAIGNYVDRSDPDGPFEACDENTLLRPNGGSYSRTALTPGFCPLSILAANDARGRPTLRISNDRHYYVTGGYEQMWDIEDQRFLDEADGWQNVSLWGMGIASRDLTGDGRDEVMLTSMGDQLMQLANDDGTYRAAPYGIGTYAQRPHVGGDGRPSTGWHAEFGDVDNDGLADLFIAKGNVDQMPGMATRDPNNLLQQQADGSFVEISDQAGVATLERSRGGALVDFDNDGQLDLIVSNRRAPLELYRNVTEGTGNWIKVSLEQAGPNRDAIGARIIVESDGRTQSQQHVIGGGHAGGQLGPRHFGIGPSDLARVTVMWPDGTKTSLDVGANEVTKIQKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S1T3</accession>
    <name>A0A1M5S1T3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 8">UDP-glucose 4-epimerase</fullName>
            <ecNumber evidence="5 8">5.1.3.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_2809</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>UDP-alpha-D-glucose = UDP-alpha-D-galactose</text>
            <dbReference type="Rhea" id="RHEA:22168"/>
            <dbReference type="ChEBI" id="CHEBI:58885"/>
            <dbReference type="ChEBI" id="CHEBI:66914"/>
            <dbReference type="EC" id="5.1.3.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 8">
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3 8">Carbohydrate metabolism; galactose metabolism.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 8">Belongs to the NAD(P)-dependent epimerase/dehydratase family.</text>
    </comment>
    <dbReference type="EC" id="5.1.3.2" evidence="5 8"/>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32371.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902105.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2809"/>
    <dbReference type="EnsemblBacteria" id="SHH32371">
        <property type="protein sequence ID" value="SHH32371"/>
        <property type="gene ID" value="SAMN05444003_2809"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00214"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003978">
        <property type="term" value="F:UDP-glucose 4-epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006012">
        <property type="term" value="P:galactose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd05247">
        <property type="entry name" value="UDP_G4E_1_SDR_e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016040">
        <property type="entry name" value="NAD(P)-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005886">
        <property type="entry name" value="UDP_G4E"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16363">
        <property type="entry name" value="GDP_Man_Dehyd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01179">
        <property type="entry name" value="galE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="7 8" id="KW-0520">NAD</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD(P)-bd_dom" evidence="9">
        <location>
            <begin position="4"/>
            <end position="321"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000083"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001911"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007637"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00018569"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU366046"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF16363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH32371.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="336" mass="36717" checksum="3A9327D5C4C7348D" modified="2017-03-15" version="1">MRVLVTGGAGYIGSHTLVELLGQAHEVQVIDNFDNSSPEVLSRVRKLTNGDMSFAEGDVRDDGFLRSVFEDFQPDQVVHFAGLKAVGESMEKPLEYYDVNVRGTMAILRAMDSVGCRKIVFSSSATVYGEPVYLPYDEDHPVAPESVYGRTKMIAEHIIGDWAQANGGTAVLLRYFNPVGAHSSATIGEHPQGVPNNLMPFVAQVASGKRERLSIFGDDYDTPDGTGRRDYIHVVDLACAHVAAVNYAHGNTGTRHFNVGTGQSYSVREMVAAFEKASGREIPCVVTPRRKGDIAEMKADASRAKHEMGWEAKLGLADMAASTWEWQSNNPDGYEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S6K9</accession>
    <name>A0A1M5S6K9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">TRAP transporter, DctM subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2879</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH34080.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902216.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2879"/>
    <dbReference type="EnsemblBacteria" id="SHH34080">
        <property type="protein sequence ID" value="SHH34080"/>
        <property type="gene ID" value="SAMN05444003_2879"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010656">
        <property type="entry name" value="DctM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004681">
        <property type="entry name" value="TRAP_DctM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33362">
        <property type="entry name" value="PTHR33362"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06808">
        <property type="entry name" value="DctM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006066">
        <property type="entry name" value="HI0050"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00786">
        <property type="entry name" value="dctM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="20"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="66"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="107"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="152"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="184"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="234"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="258"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="290"/>
            <end position="311"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="331"/>
            <end position="359"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="371"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="412"/>
            <end position="437"/>
        </location>
    </feature>
    <feature type="domain" description="DctM" evidence="4">
        <location>
            <begin position="21"/>
            <end position="431"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF06808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH34080.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="442" mass="46240" checksum="EEE13880928967BD" modified="2017-03-15" version="1">MLWNTVNQTVELGWDFYVPVLLFVALIALAVPVWAAIGSAAILMLLMSGDLPLSLVGERLFTGIDAFALTAIPLFILTGDVLVRTGLSRKFLDVAEALTCFTKGGFGSATVLVCGMFAAISGSDAAGAAAVGRMTIARLVEAGYPRPYACALVAAGACTGILIPPSIAYIIIGLVLGISASTLFLAALIPGLCILFAILITNLIVNRIYAYEGGGNLTFGEWLSNLGRALKSGWYAFIVPGIIFYGIFSGRLTPTEAGATAVIVTILMGFILGTLKFADFPSMLVSSAKVNGVILPIIAFSAPLAEALAIMGVPQGFVTSATSLTNEPWLLILLMIGILIASGCVMETTPNIVILAPILMPLAENIGMNEIQFCVMMITALGVGFITPPLGLNLFVVSGITGESILKIAARAVPFVLCMFVVVLFIAYVPAVSTSLLPDIYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S744</accession>
    <name>A0A1M5S744_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2880</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH34108.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2880"/>
    <dbReference type="EnsemblBacteria" id="SHH34108">
        <property type="protein sequence ID" value="SHH34108"/>
        <property type="gene ID" value="SAMN05444003_2880"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH34108.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="38" mass="3852" checksum="DBCB5E9D70E93208" modified="2017-03-15" version="1" fragment="single">MAVEYLKKAELTSSSGASDVHDTVVSILSEIEAGGDAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SC29</accession>
    <name>A0A1M5SC29_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Hint domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2890</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36066.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902268.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2890"/>
    <dbReference type="EnsemblBacteria" id="SHH36066">
        <property type="protein sequence ID" value="SHH36066"/>
        <property type="gene ID" value="SAMN05444003_2890"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028992">
        <property type="entry name" value="Hedgehog/Intein_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036844">
        <property type="entry name" value="Hint_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13403">
        <property type="entry name" value="Hint_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51294">
        <property type="entry name" value="SSF51294"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hint_2" evidence="1">
        <location>
            <begin position="158"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13403"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH36066.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="352" mass="38511" checksum="3E2B21D1361C930E" modified="2017-03-15" version="1">MDTRFRGTFVIPWSQTELDGQRSAPVMEISPGRVWSWTGEAVRVDGPENILPLAATDTEIDMRNRAALTVKRLLHSLGSASSRQTLVTLQEPLFGKCFVLTNGRKIWEVFVVSVGPGKKPLLMFHGNIPPRETDLWIVKHNLDEALLDEADETPQGVICFTPGTQIDTPNGPKDVSNLQVGDCVQTMDNGTAEILWLGSKSISGARLKAMPSFVPIRLRAGSLDKDVPDAGLLVSPDHRVVLRGARARDLFNSEEVLVAARDLVNDHSIIRDHSVNSVEYIHMMLPQHEIVFANGVATESFHPANAALTAMQEDELGFLKSSLPNADGQFSSYGGFARRLLKQSEAAILGAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SC99</accession>
    <name>A0A1M5SC99_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, RpiR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2897</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36207.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902279.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2897"/>
    <dbReference type="EnsemblBacteria" id="SHH36207">
        <property type="protein sequence ID" value="SHH36207"/>
        <property type="gene ID" value="SAMN05444003_2897"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901135">
        <property type="term" value="P:carbohydrate derivative metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05013">
        <property type="entry name" value="SIS_RpiR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000281">
        <property type="entry name" value="HTH_RpiR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035472">
        <property type="entry name" value="RpiR-like_SIS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001347">
        <property type="entry name" value="SIS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01418">
        <property type="entry name" value="HTH_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01380">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SSF53697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51071">
        <property type="entry name" value="HTH_RPIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51464">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH rpiR-type" evidence="1">
        <location>
            <begin position="8"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="domain" description="SIS" evidence="2">
        <location>
            <begin position="134"/>
            <end position="279"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51071"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH36207.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="295" mass="32164" checksum="DDD356DB9E8BC9F4" modified="2017-03-15" version="1">MNDTNVSYTVLERLAAEFPELTPEAQKAATYVLENPRDVGVSTVREIAEAAKVKPNTVVRMARQVGFEGYDDFREPFRDAIRSGAADFPSRARWLQDIRKKGDLGGLYADMVQSALSNIEDTFAGIDAEQLKAAAEAIWNSRNVFTLGVGVNNSNARNFTYLASTGMVQFHAIPRPGSTAIDDLAWTDGRDVLIAITCKPYRQEVVEAVQLAKEQGVKIVALSDSPASPIILAADHGFVVSSNTPQFFPSSISTIAVLETLLSFVIAVASDEIVDRVEEFHARRHELGIYATGPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SCM6</accession>
    <name>A0A1M5SCM6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Dimethylsulfoniopropionate lyase DddQ</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2900</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36284.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902283.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2900"/>
    <dbReference type="EnsemblBacteria" id="SHH36284">
        <property type="protein sequence ID" value="SHH36284"/>
        <property type="gene ID" value="SAMN05444003_2900"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047869">
        <property type="term" value="F:dimethylpropiothetin dethiomethylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031723">
        <property type="entry name" value="DMSP_lyase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16867">
        <property type="entry name" value="DMSP_lyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0456">Lyase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH36284.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="198" mass="22425" checksum="C6310AA7F082E0E8" modified="2017-03-15" version="1">MTASLDILRREVEALHRSHAELAAFCPWPDDVRPQPLKPFHIPAADLMTAETGFGATPYQRLCDALIDVSDQMQWRETYKGSNIDPDFMARFACYEIVGRDAPFASQAMRSFVVYQPTHLHYPWHHHPAEELYVVLAGEAEFHLEGTPSRTLKPGDSAFHPSATPHALTSHDHPVMAYVVWHDCFDTAPVWTHPENPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SG08</accession>
    <name>A0A1M5SG08_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 8 10">Thymidine kinase</fullName>
            <ecNumber evidence="2 8 10">2.7.1.21</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">tdk</name>
        <name evidence="12" type="ORF">SAMN05444003_2945</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8 10">
            <text>ATP + thymidine = ADP + dTMP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:19129"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17748"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:63528"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.21"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 8 11">Belongs to the thymidine kinase family.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.21" evidence="2 8 10"/>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37360.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902359.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2945"/>
    <dbReference type="EnsemblBacteria" id="SHH37360">
        <property type="protein sequence ID" value="SHH37360"/>
        <property type="gene ID" value="SAMN05444003_2945"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004797">
        <property type="term" value="F:thymidine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071897">
        <property type="term" value="P:DNA biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00124">
        <property type="entry name" value="Thymidine_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001267">
        <property type="entry name" value="Thymidine_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020633">
        <property type="entry name" value="Thymidine_kinase_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11441">
        <property type="entry name" value="PTHR11441"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00265">
        <property type="entry name" value="TK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF035805">
        <property type="entry name" value="TK_cell"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00603">
        <property type="entry name" value="TK_CELLULAR_TYPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 8 10" id="KW-0237">DNA synthesis</keyword>
    <keyword evidence="6 8 10" id="KW-0418">Kinase</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 8 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8 10" id="KW-0808">Transferase</keyword>
    <keyword evidence="8" id="KW-0862">Zinc</keyword>
    <feature type="active site" description="Proton acceptor" evidence="8 9">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="9"/>
            <end position="16"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="87"/>
            <end position="90"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="145"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="147"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="182"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="185"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007587"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR035805-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU000544"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU004165"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHH37360.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="192" mass="21442" checksum="12FAB32B930E3410" modified="2017-03-15" version="1">MAKLYFHYSTMNAGKSTVLLQASHNYVERGMQTYLLTAKLDNRAGDARIASRIGIGADADTFEWGEDLFSKIEKRLTEGPFACVFVDEAQFLEPDQVWQLARAVDDLGVPIMCYGLRVDFQGKLFPGSATLLALADEMREVRTICHCGKKATMVVRLDENGDVLKEGDQVQVGGNETYVSLCRRHWREAVGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SR01</accession>
    <name>A0A1M5SR01_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">SnoaL-like polyketide cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3047</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH40847.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902568.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3047"/>
    <dbReference type="EnsemblBacteria" id="SHH40847">
        <property type="protein sequence ID" value="SHH40847"/>
        <property type="gene ID" value="SAMN05444003_3047"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030638">
        <property type="term" value="P:polyketide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009959">
        <property type="entry name" value="Cyclase_SnoaL-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38436">
        <property type="entry name" value="PTHR38436"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07366">
        <property type="entry name" value="SnoaL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH40847.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="327" mass="37700" checksum="58444B8E76F7223D" modified="2017-03-15" version="1">MSDFQSEKEVISGYHSALERASGDEISAVEERYAHPDYIWRGFHPFDEVDDPRRVAQRFWEPLKDCLTSLQRREDIFFAGENWLHKDGSVWVVSMGHLMGLFDKEWLGIRPTRKLAMLRYCAFYRILDGKIAESLMYFDLPHLMAQAGQSPFPTQTARHLVQPGPVTHCGLLFDPQPIQEGLKTRAAIDAMVSDLGQWNLGLPLEEELARTWHDDMLWWGPEGIGATYTIERYTKQHSGPFRAAFSDRSKTNHIARVAEGEFGAFAGWPNFTAKLTGPFMGMEPTGKIGEFRVIDVYRRRGDKLHENWIFIDLLHFWKMQGMDFQIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SRU3</accession>
    <name>A0A1M5SRU3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3067</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41215.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902598.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3067"/>
    <dbReference type="EnsemblBacteria" id="SHH41215">
        <property type="protein sequence ID" value="SHH41215"/>
        <property type="gene ID" value="SAMN05444003_3067"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH41215.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="159" mass="17449" checksum="F85BA576030E1E32" modified="2017-03-15" version="1">MSCTHRHRGGAPVGYLTELTGPEAASVIYLRLWCEGGSRKQEIFGDFASVFECQQAEHLTQAFGELCRMCVQHGRRPLMRHSVQCKCLGGDEACFANFISYAADGEREDALLMATLMVRPDMAPLLTSLATEIGLAFKQMRLAAPSAVPTPTHQHATIH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5STP0</accession>
    <name>A0A1M5STP0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Dimethylsulfoniopropionate lyase DddP</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3105</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41909.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902656.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3105"/>
    <dbReference type="EnsemblBacteria" id="SHH41909">
        <property type="protein sequence ID" value="SHH41909"/>
        <property type="gene ID" value="SAMN05444003_3105"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029149">
        <property type="entry name" value="Creatin/AminoP/Spt16_NTD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036005">
        <property type="entry name" value="Creatinase/aminopeptidase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000994">
        <property type="entry name" value="Pept_M24"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00557">
        <property type="entry name" value="Peptidase_M24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53092">
        <property type="entry name" value="SSF53092"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55920">
        <property type="entry name" value="SSF55920"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_M24" evidence="2">
        <location>
            <begin position="215"/>
            <end position="428"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH41909.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="447" mass="50084" checksum="41A636A6E3E653CF" modified="2017-03-15" version="1">MNTHYRDRRKIDPSQGTHLGDGTENDGNRVEIGPTALAHTEWREAGLPLPDLAEMRKARHQRLTDAIVARGYGGLLMFDPLNIRYATDTTNMQLWNTHNPFRACLLCADGYMVLWDYKNAPFLAEYNPLVRESRSGADMFYFARGDRIGPAADAFAAEVADLLATHAPGHTQIGIDKIQPAGLDAIRRAGLDYRDGEEVTERTRGIKTEHELRAMRCAIHSCERAMAVMEDFARTEIPKGGVTEDDVWAVLHAENIKRGGEWIETRLLTSGPRTNPWFQECGPRVISENEILAFDTDLIGPYGICADLSRTWWIGDDLAPAHMRESYAEAVEHIRYNTALLRPGLHMEDLTRSLHVLQDKYDALKYSSPMHGVGMCDEWPLIAYPDRLVDGAFDAVLEPGLTLCVEALVGKVGGDHMVKLEDQGVVTDDSFETMSVYPWDERLFPGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SYX6</accession>
    <name>A0A1M5SYX6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3199</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH43675.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH43675">
        <property type="protein sequence ID" value="SHH43675"/>
        <property type="gene ID" value="SAMN05444003_3199"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH43675.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="194" mass="22562" checksum="F35BBBB2DF944570" modified="2017-03-15" version="1">MSGRHLYGAGFRGKQWVRQCAFATTMIERFSYSSWIVRNLNIFKHLRIVKNRASSENRKTMIGSIEVSFFPDRWMCTKLKLKSVGGRLQTIELHSDDIDTLVHLVSNWHDHHKLFDLPVRLGFGDRSSCYLYGPTERFQISENLSVIRTTQRQTVFIIKDDWNESADYFPVSETECGPLIELLKSQRSELIAKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SZ54</accession>
    <name>A0A1M5SZ54_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">50S ribosomal protein L3</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rplC</name>
        <name evidence="6" type="ORF">SAMN05444003_3197</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Part of the 50S ribosomal subunit. Forms a cluster with proteins L14 and L19.</text>
    </comment>
    <comment type="PTM">
        <text evidence="5">Methylated by PrmB.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the universal ribosomal protein uL3 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH43630.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902797.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3197"/>
    <dbReference type="EnsemblBacteria" id="SHH43630">
        <property type="protein sequence ID" value="SHH43630"/>
        <property type="gene ID" value="SAMN05444003_3197"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01325_B">
        <property type="entry name" value="Ribosomal_L3_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000597">
        <property type="entry name" value="Ribosomal_L3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019927">
        <property type="entry name" value="Ribosomal_L3_bac/org-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11229">
        <property type="entry name" value="PTHR11229"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00297">
        <property type="entry name" value="Ribosomal_L3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03625">
        <property type="entry name" value="L3_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0488">Methylation</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5" id="KW-0699">rRNA-binding</keyword>
    <feature type="modified residue" description="N5-methylglutamine" evidence="5">
        <location>
            <position position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00019301"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01325"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH43630.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="243" mass="25829" checksum="B0454EDD18567B1F" modified="2017-03-15" version="1">MLRSGLIAKKVGMTRLFMEDGKQVPVTVLSLENLQVVAQRTVEKDGYTAVQLGAGAAKAKRTSKAMRGHFAAAKVEPKRKVAEFRVAPENLIEVGEEFSANHYFEGQYVDVSGTSIGKGFAGAMKRHNFGGLRATHGVSISHRSHGSTGQCQDPGRVFKGKKMAGHMGAAKVTTQNLQVVRTDEDRGLIMVKGAVPGSKGGWVTIKDAVKKPTPENTVYPAGLKSAAAAEAPAEEVEAENNEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T3D5</accession>
    <name>A0A1M5T3D5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acetyl-CoA synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3218</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45257.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902865.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3218"/>
    <dbReference type="EnsemblBacteria" id="SHH45257">
        <property type="protein sequence ID" value="SHH45257"/>
        <property type="gene ID" value="SAMN05444003_3218"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.261">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003781">
        <property type="entry name" value="CoA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032875">
        <property type="entry name" value="Succ_CoA_lig_flav_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016102">
        <property type="entry name" value="Succinyl-CoA_synth-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13380">
        <property type="entry name" value="CoA_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13607">
        <property type="entry name" value="Succ_CoA_lig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00881">
        <property type="entry name" value="CoA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52210">
        <property type="entry name" value="SSF52210"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CoA_binding" evidence="1">
        <location>
            <begin position="7"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH45257.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="670" mass="70423" checksum="E0BEC4A300824E3D" modified="2017-03-15" version="1">MRELSRLLNPQSIAVIGGGAWCEQVIIQLDRFGFKGNIWPMHPKRSKIAGHEAFTSLDHLPNPPDATFVGINRRATIDAIRQLSAMGAGGATCFASGFSEAAAEDDSGTDLQQQLIDAAGDMPILGPNCYGFINALDTALIWPDQHGCTPVDTGVAILTQSSNISINLTMQQRALPIAYMIACGNMAQTSQAQIASALLDDPRVTAIGVHIEGFHDLRDWEALAQKAYAQGVPIVALKVGASDQAQATTISHTASVAGSDAGAQAFLDRLGIPRLRDLPSFLETLKMLHCHEPLENNNIASISCSGGEASLIADMALNHNLTFPPLTDPQHATLRDALGPMVALSNPLDYHTYIWRDRAAMAKAWSGMTGDGISMTFSIIDYPTTDPTDWIEATGAALDVRRQTGKGFAVVSTLPELMPLDTANDLMAGGVVPFMGLHEALSAIEAAANYCAPTTDPVTIPSLTTADTTLTEAASKAALAAFGISTPASCLITKGDDTTAAIKNMTPPFAVKGTGLAHKSDSGAVKLGVMPEGLTQAIAAIGTETVLIEEMITDAIAELLIGVVRDPAHGFVLTIGAGGVMTELLRDTTSLLLPTTAEDITEAIDTLRIAPLLHGFRDKPAANLPAITDAILSVQSYVLAHADHIGEVEINPLICTPTGAIAADALIRRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T3K0</accession>
    <name>A0A1M5T3K0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, GntR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_3221</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45327.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902869.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3221"/>
    <dbReference type="EnsemblBacteria" id="SHH45327">
        <property type="protein sequence ID" value="SHH45327"/>
        <property type="gene ID" value="SAMN05444003_3221"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011711">
        <property type="entry name" value="GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008920">
        <property type="entry name" value="TF_FadR/GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07729">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00895">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48008">
        <property type="entry name" value="SSF48008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="4">
        <location>
            <begin position="7"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH45327.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="238" mass="26717" checksum="613F071A94319665" modified="2017-03-15" version="1">MTKESPKDRKAFCAADLRDRILSLDIAPGSDLDEAQLAEAYGISRTPLREVLHRLAGGGYVRLEENRGAKVESLDLSVLRKFFQTAPLIYCSIARQAAENRTSQQMDALKAIQRDFTTSAKSGDVRDAALLNHQFHDAIGKMADNPYLFAGLKRMLVDHTRLSQTFFRPETEADETRIKKSIDQHDAMIAAIEAGEASLVTDLTLQHWDLSRDQLEKYVRPDPLPLDVVSLKEHRDAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T4T8</accession>
    <name>A0A1M5T4T8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Carbohydrate ABC transporter membrane protein 1, CUT1 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_3237</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45702.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902894.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3237"/>
    <dbReference type="EnsemblBacteria" id="SHH45702">
        <property type="protein sequence ID" value="SHH45702"/>
        <property type="gene ID" value="SAMN05444003_3237"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="24"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="86"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="119"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="170"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="224"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="280"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="82"/>
            <end position="296"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH45702.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="312" mass="34954" checksum="24F3D3BB46A66790" modified="2017-03-15" version="1">MTDVAQSSTLETSFKTRKTMSENVFGWLLIGPAMLFIALIVAWPLAETVRLSFMEARLGGEKYVGLENYQDLLDSRKFHQTIVRTFYWMFLSVSLKLILGLIGATLLNAAVPGRALFRVLVMPPWVIPIAIGMIGWLWLYNGYFGVLSGTMMSLGITDGPFEFLAHKQSAFYSAVVADVWVGTPMVTLFFLAAMQGVPRDLYEAAYVDGASRWYRFRRITIPQIMPVIVSMSLLSAIFTFNSFEIIWILTEGGPRGATTTLIVDTYKTAISNFKFGQGSARAVIIVILLGTFSLIYLFFLNKVNRYYGNGKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T513</accession>
    <name>A0A1M5T513_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Galactosamine 6-phosphate isomerase AgaS</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3243</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45835.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902901.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3243"/>
    <dbReference type="EnsemblBacteria" id="SHH45835">
        <property type="protein sequence ID" value="SHH45835"/>
        <property type="gene ID" value="SAMN05444003_3243"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901135">
        <property type="term" value="P:carbohydrate derivative metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001347">
        <property type="entry name" value="SIS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01380">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SSF53697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51464">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SIS" evidence="1">
        <location>
            <begin position="33"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="domain" description="SIS" evidence="1">
        <location>
            <begin position="189"/>
            <end position="329"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH45835.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="350" mass="37382" checksum="D55546D745C9C681" modified="2017-03-15" version="1">MTQDLSNIATWKELHRQPQIWRSWGNQLDVEGIRAWIADQSFDEVWFCGAGTSAYIGDIIAAELKGTRSVPSTDLVQRPAHYLSGARPLVVNFGRSGNSSESVGTLEALAALTPEAPQLNITCNAESALATAQTTGPRKTIILPEETHDTGFAMTSSFSTMLLTALALFDAPCDVADRLARLADQLDDLLPRFGGTKMPGRVVYVGAGPLTFAAREAALKVTELSAGKIPAIWDSTLGFRHGPKSFVDGETAITIFTSPDTPANDYDADLASELRQQFPNAQVETIGPGGDIDVPMPFGMHWAAAICVAAAQVRSVEWSAQLGMNVDDPFAGQNTLSRVVSGVKLYAVAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T5M0</accession>
    <name>A0A1M5T5M0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Membrane fusion protein (MFP) family protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_3250</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell inner membrane</location>
            <topology evidence="8">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 8">Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45988.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902914.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3250"/>
    <dbReference type="EnsemblBacteria" id="SHH45988">
        <property type="protein sequence ID" value="SHH45988"/>
        <property type="gene ID" value="SAMN05444003_3250"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009306">
        <property type="term" value="P:protein secretion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006144">
        <property type="entry name" value="Secretion_HlyD_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010129">
        <property type="entry name" value="T1SS_HlyD"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01843">
        <property type="entry name" value="type_I_hlyD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00543">
        <property type="entry name" value="HLYD_FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="3 8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="25"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="9">
        <location>
            <begin position="228"/>
            <end position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU365093"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH45988.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="439" mass="47525" checksum="E8EE1654E3CBE2CF" modified="2017-03-15" version="1">MAGSDWELREFAQGPDAARLGKTSWALTLALLVLLVAVCSFVAWASWARIEEVARADGVVVPSGRARGVESLEGGIVRAISVSEGDTVSAGDEIVRIDDTSAAASLGELEARGTSLAARALRLEAELAGADTVDFSSLGLAADDPVALREVALFDSRRAADLSQTTVLETQATQRRQEIEEITNAISRVDESLALLDEEIQLRSDSGVVPRAQIIPIERERTVKRQERDGLSGRLAQATSALAEAEARIEELRLNRRADINSERADALAEVSVIEESLKRASDVVERTSLRAPVDGIVSVLNVNTLGSVVAPGEEVARIVPEGDLLEVEARLRPEDIAFIREDLPARVKLTAFDFTIYGALDGRVVRIGADAEQDEATGTTYFPIIVETEANTLERDGELHQIKPGMVASVDILTGERTVLDYILKPLRKAQYEALRER</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T6K1</accession>
    <name>A0A1M5T6K1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (Catechol pathway)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3264</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46318.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902938.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3264"/>
    <dbReference type="EnsemblBacteria" id="SHH46318">
        <property type="protein sequence ID" value="SHH46318"/>
        <property type="gene ID" value="SAMN05444003_3264"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.850.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011234">
        <property type="entry name" value="Fumarylacetoacetase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036663">
        <property type="entry name" value="Fumarylacetoacetase_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01557">
        <property type="entry name" value="FAA_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56529">
        <property type="entry name" value="SSF56529"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAA_hydrolase" evidence="1">
        <location>
            <begin position="72"/>
            <end position="277"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH46318.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="280" mass="30030" checksum="4CA33AF13935F5B7" modified="2017-03-15" version="1">MKLLRFGNSGQEKPGVLDSCGQIRDLSSLFADISGETLSTLSRASISQKDLDALPIVSDNVRIGPCIGDVGKIICIGLNYSDHAAESGMDVPPEPIIFAKATSAICGPNDDLELPVGSVATDWEVELAIVIGRHAKNVNEDDALEYVAGYTIMNDVSERDFQQKRSGQWTKGKSCDTFGPLGPYLVTADEVPDPQNLAMWCEVNGHRYQDGSTATMVYGVRYLVSYLSQFMSLHPGDVITTGTPPGVGMGHDPQVYLKAGDTVEVGIEGFGKQSQKVVQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TBN3</accession>
    <name>A0A1M5TBN3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, GntR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_3305</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000009">
        <property type="protein sequence ID" value="SHH47753.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072903016.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000009.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3305"/>
    <dbReference type="EnsemblBacteria" id="SHH47753">
        <property type="protein sequence ID" value="SHH47753"/>
        <property type="gene ID" value="SAMN05444003_3305"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011711">
        <property type="entry name" value="GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008920">
        <property type="entry name" value="TF_FadR/GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07729">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00895">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48008">
        <property type="entry name" value="SSF48008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="4">
        <location>
            <begin position="6"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH47753.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="217" mass="24679" checksum="843E5C7ACD80AB42" modified="2017-03-15" version="1">MAKSLNVVGATTYQRIKRDIIFGRLAPGSKLKLDGLKERYEASMSTLRETLNRLASEGFVAAQDQRGFFVTDVSRDDLIEIANLRVLLECHALRLSITNGDTDWEGNLVAAHHKLHLMEQKMMAGDEKQKEDWKRYDWEFHQALISACGSKNLLSLHAVLFDKYLRYQMLVLTYRGDEAVQEHREMFEAALARDEAAAAAALKTHVEKGLEHTLEAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TDB3</accession>
    <name>A0A1M5TDB3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposase InsO and inactivated derivatives</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3328</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000014">
        <property type="protein sequence ID" value="SHH48722.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH48722">
        <property type="protein sequence ID" value="SHH48722"/>
        <property type="gene ID" value="SAMN05444003_3328"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025948">
        <property type="entry name" value="HTH-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13276">
        <property type="entry name" value="HTH_21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13683">
        <property type="entry name" value="rve_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="1">
        <location>
            <begin position="75"/>
            <end position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH48722.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="246" mass="28767" checksum="C91E2130C1D49DAC" modified="2017-03-15" version="1">MPVGRADEERLVADMIELTRQYGRYGYRRIAALLRDAGWLVNDQRVERLWRREGLKVPMKQPKKGRLWLNDGSCVRLRPEYRNHVWSYDFVHHRTDDGKAFRTLNILDEHSRECLAIRVKRKLSSTEVIDALTDLFILRGVPAFIRSDNGPEFIAQAVRDWIAAVGAKTAYIEPGSPWEKGYCESFNARLRDELLNGEVFYSLREAQILIEKWRKHYNTKRPHSALGYRPPAPETIVPMEPRPIMH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L016</accession>
    <name>A0A1M5L016_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Elongation factor P</fullName>
            <shortName evidence="7">EF-P</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">efp</name>
        <name evidence="11" type="ORF">SAMN05444003_0017</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 7">Protein biosynthesis; polypeptide chain elongation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 7 8">Belongs to the elongation factor P family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58260.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898337.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0017"/>
    <dbReference type="EnsemblBacteria" id="SHG58260">
        <property type="protein sequence ID" value="SHG58260"/>
        <property type="gene ID" value="SAMN05444003_0017"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00345"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04470">
        <property type="entry name" value="S1_EF-P_repeat_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd05794">
        <property type="entry name" value="S1_EF-P_repeat_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00141">
        <property type="entry name" value="EF_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015365">
        <property type="entry name" value="Elong-fact-P_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014722">
        <property type="entry name" value="Rib_L2_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020599">
        <property type="entry name" value="Transl_elong_fac_P/YeiP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013185">
        <property type="entry name" value="Transl_elong_KOW-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001059">
        <property type="entry name" value="Transl_elong_P/YeiP_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011768">
        <property type="entry name" value="Transl_elongation_fac_P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008991">
        <property type="entry name" value="Translation_prot_SH3-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30053">
        <property type="entry name" value="PTHR30053"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01132">
        <property type="entry name" value="EFP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08207">
        <property type="entry name" value="EFP_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09285">
        <property type="entry name" value="Elong-fact-P_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005901">
        <property type="entry name" value="EF-P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01185">
        <property type="entry name" value="EFP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00841">
        <property type="entry name" value="Elong-fact-P_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50104">
        <property type="entry name" value="SSF50104"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00038">
        <property type="entry name" value="efp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 7 11" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="6 7" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="EFP" evidence="10">
        <location>
            <begin position="69"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="domain" description="Elong-fact-P_C" evidence="9">
        <location>
            <begin position="131"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004389"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM00841"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM01185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG58260.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="187" mass="21108" checksum="AEEC49031B136CAE" modified="2017-03-15" version="1">MPKINGNEIRPGNVLEHENGLWAAVKVDHVKPGKGGAFAQVELKNLRDGRKLNERFRSADKVERVRLDQKDQQFLYEADDMLNFMDSETFEQIALPADILGDRRPFLQDGMVVQIEYYGEEALNVTLPQKVTCKVVETEPVVKGQTAANSFKPAVLDNGLRVMIPPFVGQDEDIVVNTETFEYSERA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L046</accession>
    <name>A0A1M5L046_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Protein-L-isoaspartate O-methyltransferase</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">L-isoaspartyl protein carboxyl methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">Protein L-isoaspartyl methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Protein-beta-aspartate methyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_0011</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the methyltransferase superfamily. L-isoaspartyl/D-aspartyl protein methyltransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58139.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898327.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0011"/>
    <dbReference type="EnsemblBacteria" id="SHG58139">
        <property type="protein sequence ID" value="SHG58139"/>
        <property type="gene ID" value="SAMN05444003_0011"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004719">
        <property type="term" value="F:protein-L-isoaspartate (D-aspartate) O-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000682">
        <property type="entry name" value="PCMT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11579">
        <property type="entry name" value="PTHR11579"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013346"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00030757"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00031323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00031350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG58139.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="217" mass="22959" checksum="D60B24921B9EC9F8" modified="2017-03-15" version="1">MIDFAQRRTMMVDTQVRPSDVTKFPIIDAMLDTPREAFVPEALREAAYIGENLDLGGGRTLLEPRTLAKMIDALAIEPTDIVLDVACGLGYSTAIAAQLADFAVGVESDETRASEAQSILSELGIDNAAIIAGDLTAGAAKSGPYDIIMIQGAVEAVSAEISDQLKEGGKIAAIFAEGVLGVVRIGHKQDGEVTWRFAFNASAPLLAEFDKTDGFVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L3Y2</accession>
    <name>A0A1M5L3Y2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0092</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59802.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0092"/>
    <dbReference type="EnsemblBacteria" id="SHG59802">
        <property type="protein sequence ID" value="SHG59802"/>
        <property type="gene ID" value="SAMN05444003_0092"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045387">
        <property type="entry name" value="DUF6524"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20134">
        <property type="entry name" value="DUF6524"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="49"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="74"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="106"/>
            <end position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG59802.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="143" mass="16126" checksum="5E26F831A5FC91DE" modified="2017-03-15" version="1">MVLEIYLYRVGIMPFLIRWVLAFVLLAATYNPTGWSYITWAQANWETRLPLTLFLGLIFLAGYIIYLRATLRSIGLFGILLVLAIAGTLLWVIYDFGWLSLENPAVLTWIGIVVLSIVLAIGLSWSIVRRTISGQADMDDVSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L670</accession>
    <name>A0A1M5L670_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0123</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60466.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898481.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG60466">
        <property type="protein sequence ID" value="SHG60466"/>
        <property type="gene ID" value="SAMN05444003_0123"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG60466.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="63" mass="7003" checksum="42D63600F6BEC23F" modified="2017-03-15" version="1">MWPVFAGGLSPNSLAVIKPTGFCFGVPPELSIAEAFTQVVVFDVKRIPFIDVEKLMEMLWDFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L6I2</accession>
    <name>A0A1M5L6I2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Peptidase M10 serralysin C terminal</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0134</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the peptidase M10B family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60714.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG60714">
        <property type="protein sequence ID" value="SHG60714"/>
        <property type="gene ID" value="SAMN05444003_0134"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04277">
        <property type="entry name" value="ZnMc_serralysin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.150.10.10">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018511">
        <property type="entry name" value="Hemolysin-typ_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001343">
        <property type="entry name" value="Hemolysn_Ca-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024079">
        <property type="entry name" value="MetalloPept_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013858">
        <property type="entry name" value="Peptidase_M10B_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006026">
        <property type="entry name" value="Peptidase_Metallo"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034033">
        <property type="entry name" value="Serralysin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011049">
        <property type="entry name" value="Serralysin-like_metalloprot_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00353">
        <property type="entry name" value="HemolysinCabind"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08548">
        <property type="entry name" value="Peptidase_M10_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00235">
        <property type="entry name" value="ZnMc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51120">
        <property type="entry name" value="SSF51120"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00330">
        <property type="entry name" value="HEMOLYSIN_CALCIUM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0964">Secreted</keyword>
    <feature type="domain" description="ZnMc" evidence="4">
        <location>
            <begin position="31"/>
            <end position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001913"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG60714.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="509" mass="54012" checksum="497D76D17C0A5794" modified="2017-03-15" version="1">MKVISGDRRIDGVLITEDGGFDDPVLSFHQANTLGTGVTVTFNFLTDSNLPNFEVMNASQRNAVLNILAMFETFANIEFEEVADGQEADIQFGNAALGQDGSGTVGITYLSFDTIDGTYGWLEDVEVYLANDARVNPSEYENPQPDTFAYGVLIHEIGHAVGLEHPFFGIRTPIGTDSTEYSMMSYTDGFAQPEEPRTVMPFDVLALQYLYGANMSHMSGNTRYDITEFEEGSIQTIWDAGGSDTVDLSALGEAGPRFGGQSLHYVDLDRLIDTGAKVFVAEGSNLEHVVGSNFADWVVGNGLNNNINTGPGDDLIESRAGTDTVSAGSGDDSFMNSAGDDVFRGEGGDDRALGQAGDNLFYGGSGADVLLGGLGQDSLLGGGGDDAIAGDGYSTYFGSDDRLDGGADDDLLMGGLGADTFVFRPFEGSDTIARFDVETQEILGRDFEIGQDSWMLLGFGFSDADQALQAFSNTANGAVFSSSGTTILIRGVTVEELTSDSFVFVDVGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L7P2</accession>
    <name>A0A1M5L7P2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Catechol 2,3-dioxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0149</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61031.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898509.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0149"/>
    <dbReference type="EnsemblBacteria" id="SHG61031">
        <property type="protein sequence ID" value="SHG61031"/>
        <property type="gene ID" value="SAMN05444003_0149"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004360">
        <property type="entry name" value="Glyas_Fos-R_dOase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00903">
        <property type="entry name" value="Glyoxalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="3"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG61031.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="128" mass="14309" checksum="EF674F88C3FA01E7" modified="2017-03-15" version="1">MQRLALLSILVPDYDEGIAFFVGQMGFRLLEDTGLGEGKRCVRVAPAGAETKFLLAKADDDQAAAIGNQGGGCVWLFLETNDFERDHRRMTSNGVSFEEQPRHEPYGIVAVFRDPFGNRWDLIQFQNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L7Y9</accession>
    <name>A0A1M5L7Y9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, AraC family with amidase-like domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0141</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60869.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG60869">
        <property type="protein sequence ID" value="SHG60869"/>
        <property type="gene ID" value="SAMN05444003_0141"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="1">
        <location>
            <begin position="221"/>
            <end position="319"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG60869.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="334" mass="36522" checksum="A51F0A052C9A309F" modified="2017-03-15" version="1">MNKGEGITIGFLIFPGFPMACLTSLIEPLRAANEISSTNTFSWRLISENGIRVQSSASVWFEPDLALAEADSLDAIYILSSPSGTFEDAKISNGRLRKLERHGLDLGAVSGGVFPLARSGLLDGYTVSVHWCYAAAFDAEFPDLDVTDEVIAIDRRRLTASGASAAFDLALILIDRHLGPEVATEVACWFQHPLVRGEGITQKVPTANSISTDDMLPRSVQQAVALFSSHIEDPINVADAAAVVGISVRQLERMFKQSTGQSPHHYYRTIRMKAARQLVLYSNDSLRDIALAVGYSSTATLTQNYKETFGIQPSVDREKVNLFRVRETQIARSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L9Q6</accession>
    <name>A0A1M5L9Q6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0178</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61716.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898545.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0178"/>
    <dbReference type="EnsemblBacteria" id="SHG61716">
        <property type="protein sequence ID" value="SHG61716"/>
        <property type="gene ID" value="SAMN05444003_0178"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018919">
        <property type="entry name" value="DUF2484"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10658">
        <property type="entry name" value="DUF2484"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="29"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="52"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG61716.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="84" mass="9715" checksum="5B849AC8E13006B1" modified="2017-03-15" version="1">MTLSLFAASLWFVLAAVLASIPSNDQHWRRAYFLIAIGIPIVGWVAYQNGPWIALIILGAGCSFLRWPVYYLWQWFKRNVTQRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L9Z0</accession>
    <name>A0A1M5L9Z0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6">Cell division protein FtsA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">ftsA</name>
        <name evidence="8" type="ORF">SAMN05444003_0183</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 6">Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Self-interacts. Interacts with FtsZ.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Peripheral membrane protein</topology>
            <orientation evidence="5">Cytoplasmic side</orientation>
        </subcellularLocation>
        <text evidence="5">Localizes to the Z ring in an FtsZ-dependent manner. Targeted to the membrane through a conserved C-terminal amphipathic helix.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 6">Belongs to the FtsA/MreB family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61841.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898550.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0183"/>
    <dbReference type="EnsemblBacteria" id="SHG61841">
        <property type="protein sequence ID" value="SHG61841"/>
        <property type="gene ID" value="SAMN05444003_0183"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032153">
        <property type="term" value="C:cell division site"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009898">
        <property type="term" value="C:cytoplasmic side of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043093">
        <property type="term" value="P:FtsZ-dependent cytokinesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02033">
        <property type="entry name" value="FtsA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020823">
        <property type="entry name" value="Cell_div_FtsA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003494">
        <property type="entry name" value="SHS2_FtsA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02491">
        <property type="entry name" value="SHS2_FTSA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003101">
        <property type="entry name" value="FtsA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00842">
        <property type="entry name" value="FtsA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01174">
        <property type="entry name" value="ftsA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5 6" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="2 5 6" id="KW-0132">Cell division</keyword>
    <keyword evidence="1 5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FtsA" evidence="7">
        <location>
            <begin position="24"/>
            <end position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR003101"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG61841.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="444" mass="48259" checksum="2A1D1E1099CC5A06" modified="2017-03-15" version="1">MKDVYESQRAMRNMRKAAMQRGVIAILDVGTSKIACLVLRFDGPDQFGTPEGIGSLAGQSQFRVIGAATTRSRGVRFGEVDAMQETERAIRTAVQAAQKMANVRVDHVIACLSGARPRSYGLDGMVEIENGMVTDNDIARVMASCDVPDYGHDRDVLHAQPVNFSLDHRSSLADPRGQMGNKLTTDMHMLTVDSVALQNLFFCIKRCDLELAGIASSAYVSGISSLVEDEQELGAACIDFGGGSTGVSIFMRKHMIYGDAVRMGGDHVTGDISMGLQVPMATAERIKTFYGGVLATGMDDREMIEIGGETGDWEHDRRTVSRAELIGIMRPRVEEILEEVRLRLDAAGFDHLPSQQIVLTGGASQIPGLDGLASKILGSQVRLGRPLRVQGLPQAATGPAFSGAVGLTLFAAHPQDEWWDFDIPADTYPARSLKRAVKWFKDNW</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LA53</accession>
    <name>A0A1M5LA53_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Outer membrane protein assembly factor BamD</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">bamD</name>
        <name evidence="3" type="ORF">SAMN05444003_0186</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the Bam complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the BamD family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61907.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0186"/>
    <dbReference type="EnsemblBacteria" id="SHG61907">
        <property type="protein sequence ID" value="SHG61907"/>
        <property type="gene ID" value="SAMN05444003_0186"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043165">
        <property type="term" value="P:Gram-negative-bacterium-type cell outer membrane assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051205">
        <property type="term" value="P:protein insertion into membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd15830">
        <property type="entry name" value="BamD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00922">
        <property type="entry name" value="OM_assembly_BamD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017689">
        <property type="entry name" value="BamD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039565">
        <property type="entry name" value="BamD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13525">
        <property type="entry name" value="YfiO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03302">
        <property type="entry name" value="OM_YfiO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="domain" description="YfiO" evidence="2">
        <location>
            <begin position="42"/>
            <end position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG61907.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="285" mass="32711" checksum="F73ED80FADBDB67D" modified="2017-03-15" version="1">MSGNRNKGLGRGLRVIAGFSVVVALVACSSFDSRRPGALEQYTAKEIFERGELELERGDGEEAAFYFGEIERLYPYSEYAKRALIMQAFAYHKERDYPNSRSSAQRYIDFYPATEDAAYAQYLLALSYYDQIDEIGRDQGLTFQALQSLRTVIEQYPDTEYARSSVLKFDLAFDHLAAKEMEVGRYYLKRNHFTAAANRFRVVVEDFQTTTHTPEALHRLVECYLSLGLIQEAQTAAAILGYNFQSTEWYEASYALLTLQGLEPRSIGDNWLTAIYRQMIRGEWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LBL2</accession>
    <name>A0A1M5LBL2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0194</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62109.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0194"/>
    <dbReference type="EnsemblBacteria" id="SHG62109">
        <property type="protein sequence ID" value="SHG62109"/>
        <property type="gene ID" value="SAMN05444003_0194"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="153"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG62109.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="173" mass="18920" checksum="3A1C07696A1124D0" modified="2017-03-15" version="1">MLVEIRRLVTSDLALRRIGADLGGLGEGKEDFTPTTVNSGQDAVSIGGLLTAETILTLEAKTMTVHDKLNEDRPIAAEYVLGLLEPSDAEDFEKAMKDDPFLRASYAQWAAYFANENSQIAPVSPPEHVVQNIDKTIFLNDVKEEPVITRWGMLPLLASALCGCAALMVWIVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LHZ3</accession>
    <name>A0A1M5LHZ3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Molybdopterin molybdenumtransferase</fullName>
            <ecNumber evidence="1">2.10.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0299</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>adenylyl-molybdopterin + H(+) + molybdate = AMP + H2O + Mo-molybdopterin</text>
            <dbReference type="Rhea" id="RHEA:35047"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:36264"/>
            <dbReference type="ChEBI" id="CHEBI:62727"/>
            <dbReference type="ChEBI" id="CHEBI:71302"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; molybdopterin biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the MoeA family.</text>
    </comment>
    <dbReference type="EC" id="2.10.1.1" evidence="1"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898735.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0299"/>
    <dbReference type="EnsemblBacteria" id="SHG64638">
        <property type="protein sequence ID" value="SHG64638"/>
        <property type="gene ID" value="SAMN05444003_0299"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00344"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061599">
        <property type="term" value="F:molybdopterin molybdotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032324">
        <property type="term" value="P:molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.980.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036425">
        <property type="entry name" value="MoaB/Mog-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038987">
        <property type="entry name" value="MoeA-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10192">
        <property type="entry name" value="PTHR10192"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53218">
        <property type="entry name" value="SSF53218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0460">Magnesium</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0500">Molybdenum</keyword>
    <keyword evidence="1" id="KW-0501">Molybdenum cofactor biosynthesis</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU365090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG64638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="326" mass="34020" checksum="9B4160492E93441F" modified="2017-03-15" version="1">MKFGEVPISEAEGGILAHRVSNLGKGKVITADDVTLLDKQGIETVVVARLQDGDIGEDEAAQLLAGALVGNTSGLRLTKASTGRVNVVADVPGLAAVSADVINAVNAVDPMVTVATVPDLHRLDAGSLLATIKIISYAVPKEDVLRAVDHASGGLGLHLPQPKTVSLIETYHGEEPQSDKGERALRTRLEALGQTLETSDFAPHQIVRVAGKLTSDPSDIICLLTASATSDARDIGPEAVRAAGGELIHFGMPVDPGNLLFLGRIGDQIVLGLPGCARSPALNGADWVLERLICGIDVRASDIVGMGVGGLLKEIPTRPRPRRSHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LJ65</accession>
    <name>A0A1M5LJ65_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">Translation initiation factor IF-3</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">infC</name>
        <name evidence="8" type="ORF">SAMN05444003_0303</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 5">IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4 5">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4 5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 4 5">Belongs to the IF-3 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64709.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0303"/>
    <dbReference type="EnsemblBacteria" id="SHG64709">
        <property type="protein sequence ID" value="SHG64709"/>
        <property type="gene ID" value="SAMN05444003_0303"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00080">
        <property type="entry name" value="IF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036788">
        <property type="entry name" value="T_IF-3_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036787">
        <property type="entry name" value="T_IF-3_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019813">
        <property type="entry name" value="Translation_initiation_fac3_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001288">
        <property type="entry name" value="Translation_initiation_fac_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019815">
        <property type="entry name" value="Translation_initiation_fac_3_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019814">
        <property type="entry name" value="Translation_initiation_fac_3_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10938">
        <property type="entry name" value="PTHR10938"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00707">
        <property type="entry name" value="IF3_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05198">
        <property type="entry name" value="IF3_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54364">
        <property type="entry name" value="SSF54364"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55200">
        <property type="entry name" value="SSF55200"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00168">
        <property type="entry name" value="infC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00938">
        <property type="entry name" value="IF3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 4 5" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="3 4 5" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="IF3_N" evidence="7">
        <location>
            <begin position="30"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="domain" description="IF3_C" evidence="6">
        <location>
            <begin position="106"/>
            <end position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000646"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF05198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG64709.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="193" mass="22195" checksum="516BECA2042A9FE4" modified="2017-03-15" version="1">MRTTPIAKRTKTIARRPHNAPPQRDTGPRINDRIRATEIRLIGAEGENVGVVSPERALVMAEDAGLDLVEISPNANPPVCKIMDYGKFKYETQKKEAEARKKQKTIEIKEIKFRPNTDNHDYEVKMRNVFKFLENGDKVKITLRFRGREMAHQELGRQLLERVAEDTKETGKVENFPKMEGRQMVMLIGPVQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LMS0</accession>
    <name>A0A1M5LMS0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Thioredoxin peroxidase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_0350</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65623.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898806.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0350"/>
    <dbReference type="EnsemblBacteria" id="SHG65623">
        <property type="protein sequence ID" value="SHG65623"/>
        <property type="gene ID" value="SAMN05444003_0350"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004601">
        <property type="term" value="F:peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000866">
        <property type="entry name" value="AhpC/TSA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024706">
        <property type="entry name" value="Peroxiredoxin_AhpC-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00578">
        <property type="entry name" value="AhpC-TSA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000239">
        <property type="entry name" value="AHPC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="1" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin" evidence="5">
        <location>
            <begin position="4"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="active site" description="Cysteine sulfenic acid (-SOH) intermediate" evidence="4">
        <location>
            <position position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00032824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000239-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG65623.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="155" mass="16989" checksum="3E1D65E8C54F93DD" modified="2017-03-15" version="1">MADLNIGDPAPGFSLPRDGGDEVSLSDLKGQNVVLYFYPKDDTPGCTKEAIAFTGQKDEFAALNTVIYGISKDKVAKHEKFIAKHDLGIPLLSDEKGSMCEDYGVWVEKSMYGKTYMGIERATYLIDTEGKIAQIWRKVKVPGHSDAVLDAVKAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LP45</accession>
    <name>A0A1M5LP45_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="12">LexA repressor</fullName>
            <ecNumber evidence="12">3.4.21.88</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="primary">lexA</name>
        <name evidence="17" type="ORF">SAMN05444003_0372</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>Hydrolysis of Ala-|-Gly bond in repressor LexA.</text>
            <dbReference type="EC" id="3.4.21.88"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="12">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 12 13">Belongs to the peptidase S24 family.</text>
    </comment>
    <dbReference type="EC" id="3.4.21.88" evidence="12"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66123.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898838.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0372"/>
    <dbReference type="EnsemblBacteria" id="SHG66123">
        <property type="protein sequence ID" value="SHG66123"/>
        <property type="gene ID" value="SAMN05444003_0372"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009432">
        <property type="term" value="P:SOS response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06529">
        <property type="entry name" value="S24_LexA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00015">
        <property type="entry name" value="LexA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006200">
        <property type="entry name" value="LexA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039418">
        <property type="entry name" value="LexA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036286">
        <property type="entry name" value="LexA/Signal_pep-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006199">
        <property type="entry name" value="LexA_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006197">
        <property type="entry name" value="Peptidase_S24_LexA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015927">
        <property type="entry name" value="Peptidase_S24_S26A/B/C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01726">
        <property type="entry name" value="LexA_DNA_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00717">
        <property type="entry name" value="Peptidase_S24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00726">
        <property type="entry name" value="LEXASERPTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51306">
        <property type="entry name" value="SSF51306"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00498">
        <property type="entry name" value="lexA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 12 13" id="KW-0068">Autocatalytic cleavage</keyword>
    <keyword evidence="4 12" id="KW-0227">DNA damage</keyword>
    <keyword evidence="10 12" id="KW-0234">DNA repair</keyword>
    <keyword evidence="3 12" id="KW-0235">DNA replication</keyword>
    <keyword evidence="8 12" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5 12 13" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 12" id="KW-0678">Repressor</keyword>
    <keyword evidence="11 12" id="KW-0742">SOS response</keyword>
    <keyword evidence="9 12" id="KW-0804">Transcription</keyword>
    <keyword evidence="7 12" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="LexA_DNA_bind" evidence="16">
        <location>
            <begin position="2"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_S24" evidence="15">
        <location>
            <begin position="109"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="12">
        <location>
            <begin position="26"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="14">
        <location>
            <begin position="75"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="active site" description="For autocatalytic cleavage activity" evidence="12">
        <location>
            <position position="151"/>
        </location>
    </feature>
    <feature type="active site" description="For autocatalytic cleavage activity" evidence="12">
        <location>
            <position position="189"/>
        </location>
    </feature>
    <feature type="site" description="Cleavage; by autolysis" evidence="12">
        <location>
            <begin position="116"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022813"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU003991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF00717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF01726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="SHG66123.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="230" mass="24866" checksum="428B70986182BFB3" modified="2017-03-15" version="1">MLTKKQLDLLEFIHTRTQRDGVPPSFDEMKEALDLRSKSGIHRLITALEERGYIRRLAHRARALEVVKLPESLGGPSSTGFTPRVIEGDKPDSTPPQAMPVEAASLDIPVMGKIAAGVPIEAISHASHNVAVPKSMLGNGEHYALEVKGDSMINAGINDGDIVIVRETSVADDGDIVVALVEGQEATLKTLRRNGSSIALEAANPAYETRVFRDEQVKVQGKLAGLIRTY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LRE5</accession>
    <name>A0A1M5LRE5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0435</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67581.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898928.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG67581">
        <property type="protein sequence ID" value="SHG67581"/>
        <property type="gene ID" value="SAMN05444003_0435"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG67581.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="201" mass="21412" checksum="64E16B8A9FF68C94" modified="2017-03-15" version="1">MQKLTLFFVAIAATMMFALWQRNFVGAFEAQFDERPTLAPQNDGTVLSQAVAAVLEPDFFDKPASHSALTMSLVQSDPANQDLDQAGQIRAAFALGNELGHDGVMERYLSTTKFANGCEGLENARNGLQFAADVPVAIQDLALAAMLDNSGSTQKNATQIRNSVVDLAKNLSSESRISSEIMVEIEALSASTFAISGGCSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LRK7</accession>
    <name>A0A1M5LRK7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Dihydrothymine dehydrogenase</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Dihydrouracil dehydrogenase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_0422</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the dihydropyrimidine dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67269.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898908.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0422"/>
    <dbReference type="EnsemblBacteria" id="SHG67269">
        <property type="protein sequence ID" value="SHG67269"/>
        <property type="gene ID" value="SAMN05444003_0422"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006210">
        <property type="term" value="P:thymine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006212">
        <property type="term" value="P:uracil catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005720">
        <property type="entry name" value="Dihydroorotate_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044512">
        <property type="entry name" value="DPYD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43073">
        <property type="entry name" value="PTHR43073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01180">
        <property type="entry name" value="DHO_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DHO_dh" evidence="5">
        <location>
            <begin position="5"/>
            <end position="319"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010804"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00030119"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00032722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG67269.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="365" mass="39470" checksum="CAA4D2DAECEEB200" modified="2017-03-15" version="1">MTVDLTTKFTGLDFVNPFILASAPPTESKRKILRAFEAGWGGIVTKTIGLHPVENVAGPKTIYQRTSEEKPYVSRMKRADTVSHSSWNWELISDQALEIWLPDLKEIKETYPDRMVIASIMAGAGSQEELDNWCKLAKEVVAVGCDAIELNMSCPHMDRKDMGANIANDEEIIRDIVGAVTKAVDVPIWVKLTPATSTVADAAGAAYDAGAACISICNTFPSLPLMDPETLKFEVEVDGLVTSGGLGGLAILPQALQRVSDINKAHPDGAISGIGGIRGFREAFNFIVHGAGNLQICTAAMEEKGSGGVGVKLIQELKDDLADYLERHGHSSIEDFRGIARDRIVEHSQVRRKSDDYNGGYAKSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LSK9</accession>
    <name>A0A1M5LSK9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0454</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68001.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG68001">
        <property type="protein sequence ID" value="SHG68001"/>
        <property type="gene ID" value="SAMN05444003_0454"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG68001.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="84" mass="9288" checksum="2A6FD866F4F6258F" modified="2017-03-15" version="1">MLALTLRFWRKGQCRTGRVLPPEGDEIDKFDELAHKGDEECPIKEEVVYCKNGKQDATKPEGKRICHAVGVAGSFGDAQPKTVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LSS3</accession>
    <name>A0A1M5LSS3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Transketolase</fullName>
            <ecNumber evidence="5">2.2.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_0456</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the transketolase family.</text>
    </comment>
    <dbReference type="EC" id="2.2.1.1" evidence="5"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68045.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898964.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0456"/>
    <dbReference type="EnsemblBacteria" id="SHG68045">
        <property type="protein sequence ID" value="SHG68045"/>
        <property type="gene ID" value="SAMN05444003_0456"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004802">
        <property type="term" value="F:transketolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd02012">
        <property type="entry name" value="TPP_TK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009014">
        <property type="entry name" value="Transketo_C/PFOR_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005475">
        <property type="entry name" value="Transketolase-like_Pyr-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005478">
        <property type="entry name" value="Transketolase_bac-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020826">
        <property type="entry name" value="Transketolase_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033248">
        <property type="entry name" value="Transketolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033247">
        <property type="entry name" value="Transketolase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005474">
        <property type="entry name" value="Transketolase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43522">
        <property type="entry name" value="PTHR43522"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02779">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02780">
        <property type="entry name" value="Transketolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00456">
        <property type="entry name" value="Transketolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00861">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52922">
        <property type="entry name" value="SSF52922"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00232">
        <property type="entry name" value="tktlase_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00802">
        <property type="entry name" value="TRANSKETOLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0786">Thiamine pyrophosphate</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Transket_pyr" evidence="10">
        <location>
            <begin position="357"/>
            <end position="528"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007131"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM00861"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG68045.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="672" mass="72381" checksum="F285EE7181B1EDA3" modified="2017-03-15" version="1">MDIAALRTAHPDHWMKAAAIRTLTLDAVAAANSGHSGMPMGMADVATVLYEKHLRFDPKDANWPDRDRFILSAGHGSMLLYSLLYLTGYEGMDLQQLKDFRQWGAKTAGHPEYGHAAGIETTTGPLGQGIANSVGFAIAEEIQRARYGKNIVNHRTYVIAGDGCLMEGVSQEAIGLAGKHELGNLIVFWDNNNITIDGTVDIADKTDQVMRFEASGWHVISIDGHDPEAIDKAIIAAQKDPRPSMVACKTHIALGHAAQDTSKGHGALTDPDQLKAAKEAYGWTGGPFEIPADVKAGWEAMGERGAAARAEWQDRFLKLSGTKQAEFNRAYALEAPKKLASAIRAFKKQMAEEAPKLATRAASEKVLGVVNPIMKETIGGSADLTGSNNTKTADLGVFEPENRGGRYIYYGIREHGMAAAMNGMVLHGGARPYGGTFMCFTDYARGSMRLSALMQVPTTYVMTHDSIGLGEDGPTHQPVEHLALLRATPNTHVFRPADIVETAEAWECALTAKTTPHVLALSRQGLPCVRKEHKAKNLSAQGGYVLADAEGKRQVILMASGSEVSVAMEARDILQAEGIGTRVVSMPCMEVFAEQDESYRKRVLPGGPARVAIEAGVRQGWDQWLLGERGREQKAAFVGMDSFGASAPAGTLFEKFGITAKDTSEAAKALLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LU40</accession>
    <name>A0A1M5LU40_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Cytochrome c-type biogenesis protein CcmF</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_0472</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the CcmF/CycK/Ccl1/NrfE/CcsA family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68420.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898985.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0472"/>
    <dbReference type="EnsemblBacteria" id="SHG68420">
        <property type="protein sequence ID" value="SHG68420"/>
        <property type="gene ID" value="SAMN05444003_0472"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015232">
        <property type="term" value="F:heme transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017004">
        <property type="term" value="P:cytochrome complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032523">
        <property type="entry name" value="CcmF_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002541">
        <property type="entry name" value="Cyt_c_assembly"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003567">
        <property type="entry name" value="Cyt_c_biogenesis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003568">
        <property type="entry name" value="Cyt_c_biogenesis_CcmF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43653">
        <property type="entry name" value="PTHR43653"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16327">
        <property type="entry name" value="CcmF_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01578">
        <property type="entry name" value="Cytochrom_C_asm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01410">
        <property type="entry name" value="CCBIOGENESIS"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01411">
        <property type="entry name" value="CCMFBIOGNSIS"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00353">
        <property type="entry name" value="nrfE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0201">Cytochrome c-type biogenesis</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="47"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="96"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="126"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="175"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="207"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="249"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="274"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="312"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="352"/>
            <end position="374"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="394"/>
            <end position="413"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="425"/>
            <end position="442"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="448"/>
            <end position="470"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="491"/>
            <end position="513"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="615"/>
            <end position="634"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrom_C_asm" evidence="8">
        <location>
            <begin position="89"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="domain" description="CcmF_C" evidence="9">
        <location>
            <begin position="315"/>
            <end position="637"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022748"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01578"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF16327"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG68420.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="654" mass="70849" checksum="26BD627EABB8FAD0" modified="2017-03-15" version="1">MLIELAHFCLILAFAISIVQMIVPLVGAHKNWRGWMALAEPAATSQVILVGFAFAVLTWAFVVSDFSVQLVYLNSHTDKPLIYKISGVWGNHEGSLLLWVLILAIFGACAAWFGDDLPARLKARVLAVQAAVSVAFYAFIIFTSNPFVRLEFAPLNGRDLNPLLQDPGLAFHPPLLYLGYVGLSMTFSFAVAALIEGKVDAAWGRWVRPWTLAAWMFLTVGIALGSWWAYYELGWGGFWFWDPVENASFMPWLFAAALLHSAIVVEKREALKSWTILLAILAFGFSLLGTFIVRSGVLTSVHAFANDPERGVYILAIMVIFTGGSLALFAIRSAALEAKGAFGIVSRESALVLNNILLAVSAFVVFIGTMWPLIAEMATGRVLSVGPPFFNAAFTPFMIALALALPIGSMLAWKRGSIKRTAKSLVGWAVLAVAIGLLAYAVQTGRSALGPVGMALGVWVVGGALTDLWSRTGRGGVPDRVRRLRRLPRADWGKALAHFGIGVTFLGVAGILARETEDIRVAQIGESYQVGAYEVTLADVRQERGPNYVTTIADVAIERGGQSYVLQPEKRFYPVAQMPTTEAAIRNGFLRDVYAVIGDPQEGGGYAVRLYIKPLANWIWGGCILMALGGLLSLSDRRLRVAAGAAKAKTVPAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LWS6</accession>
    <name>A0A1M5LWS6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Kef-type potassium/proton antiporter, CPA2 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_0515</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899039.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0515"/>
    <dbReference type="EnsemblBacteria" id="SHG69370">
        <property type="protein sequence ID" value="SHG69370"/>
        <property type="gene ID" value="SAMN05444003_0515"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015079">
        <property type="term" value="F:potassium ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015299">
        <property type="term" value="F:solute:proton antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1530.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006153">
        <property type="entry name" value="Cation/H_exchanger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006036">
        <property type="entry name" value="K_uptake_TrkA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038770">
        <property type="entry name" value="Na+/solute_symporter_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003148">
        <property type="entry name" value="RCK_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00999">
        <property type="entry name" value="Na_H_Exchanger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02254">
        <property type="entry name" value="TrkA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00335">
        <property type="entry name" value="KUPTAKETRKA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51201">
        <property type="entry name" value="RCK_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0406">Ion transport</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0630">Potassium</keyword>
    <keyword evidence="1" id="KW-0633">Potassium transport</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="6"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="30"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="53"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="85"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="113"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="150"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="227"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="268"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="316"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="341"/>
            <end position="365"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="371"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="404"/>
            <end position="423"/>
        </location>
    </feature>
    <feature type="domain" description="RCK N-terminal" evidence="9">
        <location>
            <begin position="447"/>
            <end position="569"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="188"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="192"/>
            <end position="214"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG69370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="656" mass="70143" checksum="A3041550AF797FC4" modified="2017-03-15" version="1">MTDFLALAFVFLAAGVVAVPIASRLGLGSVLGYLIAGIAISPILVILNVDVISIQHFAEFGVVMMLFLVGLELEPKLLWGMRARLLGLGGGQVILTTLAVMGIAMLFGQPWTIALAIGLVLALSSTAIVLQTLNEKGLMKSDGGQSSFSVLLTQDIAVIPMLALIPLLAMPDLMDVAMAADTHGEVAAHASDSSGHGDDHGDGHADDHGDDHGHGGGMSLVDGLDGWQTALVTIGAVAAVVLGGSYLTRPVFRFISAANLRELFTATALMMVVGIALLMSLVGLSAALGTFLAGVVLANSEYRHELESDIDPFKGLLLGLFFMTVGAGINFGLLGANVAMILGLTIGLMFVKGLILFGLGTLFGLRGTDRWLLTLGLAQAGEFGFVLLSFTVANQVLPQSISQMLLLVVAISMLLTPVLFILYDKVIAPKYSDDQARDPDEINERNHIIIAGSGRVGGMVNRMLVAAGFSSTVIDYSAKQLENLRAFGVHNYYGDATRPDLLHAAGIEEAKLLVIAIDDKDQITNLVHYVHQNYPHVHILTRAITRDHVYDLWAAGSRDIVRETFDSSIRMGRSAFEALGIHRDHAQQMADEFVKMDGKAMIAVADVHDPNVPAAQNEAYVARVMEILGPWQDELNQKMNEIRAQDIPDEELEGKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LXI1</accession>
    <name>A0A1M5LXI1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Probable cytosol aminopeptidase</fullName>
            <ecNumber evidence="8">3.4.11.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Leucine aminopeptidase</fullName>
            <shortName evidence="8">LAP</shortName>
            <ecNumber evidence="8">3.4.11.10</ecNumber>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Leucyl aminopeptidase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">pepA</name>
        <name evidence="10" type="ORF">SAMN05444003_0535</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>Release of an N-terminal amino acid, Xaa-|-Yaa-, in which Xaa is preferably Leu, but may be other amino acids including Pro although not Arg or Lys, and Yaa may be Pro. Amino acid amides and methyl esters are also readily hydrolyzed, but rates on arylamides are exceedingly low.</text>
            <dbReference type="EC" id="3.4.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 8">
            <text>Release of an N-terminal amino acid, preferentially leucine, but not glutamic or aspartic acids.</text>
            <dbReference type="EC" id="3.4.11.10"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="8">Binds 2 manganese ions per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the peptidase M17 family.</text>
    </comment>
    <dbReference type="EC" id="3.4.11.1" evidence="8"/>
    <dbReference type="EC" id="3.4.11.10" evidence="8"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69804.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899070.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0535"/>
    <dbReference type="EnsemblBacteria" id="SHG69804">
        <property type="protein sequence ID" value="SHG69804"/>
        <property type="gene ID" value="SAMN05444003_0535"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030145">
        <property type="term" value="F:manganese ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070006">
        <property type="term" value="F:metalloaminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00433">
        <property type="entry name" value="Peptidase_M17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00181">
        <property type="entry name" value="Cytosol_peptidase_M17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011356">
        <property type="entry name" value="Leucine_aapep/pepB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043472">
        <property type="entry name" value="Macro_dom-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000819">
        <property type="entry name" value="Peptidase_M17_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023042">
        <property type="entry name" value="Peptidase_M17_leu_NH2_pept"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008283">
        <property type="entry name" value="Peptidase_M17_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11963">
        <property type="entry name" value="PTHR11963"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00883">
        <property type="entry name" value="Peptidase_M17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02789">
        <property type="entry name" value="Peptidase_M17_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00481">
        <property type="entry name" value="LAMNOPPTDASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52949">
        <property type="entry name" value="SSF52949"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00631">
        <property type="entry name" value="CYTOSOL_AP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8 10" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7 8" id="KW-0464">Manganese</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 8" id="KW-0645">Protease</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CYTOSOL_AP" evidence="9">
        <location>
            <begin position="333"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="active site" evidence="8">
        <location>
            <position position="265"/>
        </location>
    </feature>
    <feature type="active site" evidence="8">
        <location>
            <position position="339"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="253"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="258"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="276"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="335"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="337"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000135"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00000967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS00631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG69804.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="488" mass="51430" checksum="D67E09F7AC18BE98" modified="2017-03-15" version="1">MSQPIELKFEGIDIHDVKSISGALVIFATPDGKLDALGRKVNSASRKAVQRFLESSAFEGMSEGSISRLAFPSGLKADAILIVKLGKRAKALEVRRVGAKLAKMHSASDTNILAGGLKHASELAFGFALRHYEFSSHKTAEAKPVGTVKLHVNAPEAVAKNAKDAAAVAEGVFFTRDLTNEPANVLTTDDFAARLAAMQEIGLDVEILEEKELEKLGMGALLCVGQGSVSPSKVVVMSWNGGGKEPPLALVGKGVVFDTGGISLKNPSGMEEMTMDMGGAGVVSGVMRALALRKAKANVVGLVGLVENMPSDRATRPGDVVTSMKSDTIEVINTDAEGRLVLADVLWYAQERFKPSGVIDLATLTGAMLVALGHDLCGVYSNSDSLVAQLLKAAESEGEGAWRMPLGDGYAKGLKSRIADMKNVGGRYGGANIAAEFLRKFVKEETPWCHLDIAGVALTKSETPMAPAGATGWGVMTLNRLIADHFEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LYI2</accession>
    <name>A0A1M5LYI2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transcriptional regulator, BadM/Rrf2 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0547</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70078.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899088.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0547"/>
    <dbReference type="EnsemblBacteria" id="SHG70078">
        <property type="protein sequence ID" value="SHG70078"/>
        <property type="gene ID" value="SAMN05444003_0547"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000944">
        <property type="entry name" value="Tscrpt_reg_Rrf2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33221">
        <property type="entry name" value="PTHR33221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02082">
        <property type="entry name" value="Rrf2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00738">
        <property type="entry name" value="rrf2_super"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51197">
        <property type="entry name" value="HTH_RRF2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG70078.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="152" mass="16452" checksum="98503D3884202D2D" modified="2017-03-15" version="1">MKLSTKGRYAMVALTDIAMQPETALVNLTEISKRQDISLAYLEQLFVKLRRADLVVSVRGPGGGYRLSRPASDIRVAEILEAVDETVSAMHKGGGATGAESGSRAQSLTNRLWEGLSAHVYVFLHQARLSDVVENDLAPCPAVPALFEVVDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LYJ0</accession>
    <name>A0A1M5LYJ0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0551</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70174.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899092.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG70174">
        <property type="protein sequence ID" value="SHG70174"/>
        <property type="gene ID" value="SAMN05444003_0551"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG70174.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="59" mass="6256" checksum="2FB068CF808D9774" modified="2017-03-15" version="1">MTRFMWVSAFMTGLFCAGFAAVVDALTDQLMVWQVIALAALSGTLGSLFAQVVLGRSGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M5W7</accession>
    <name>A0A1M5M5W7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0655</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72656.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899239.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0655"/>
    <dbReference type="EnsemblBacteria" id="SHG72656">
        <property type="protein sequence ID" value="SHG72656"/>
        <property type="gene ID" value="SAMN05444003_0655"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019613">
        <property type="entry name" value="DUF4198"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10670">
        <property type="entry name" value="DUF4198"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012657682" evidence="1">
        <location>
            <begin position="18"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG72656.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="266" mass="29332" checksum="6A7BC3151246FDCD" modified="2017-03-15" version="1">MRCLALAFALLSSPLQAHELWIEPIAYEVAAQDMAVANLVNGENFEGNNIAYFPNQFRRFVAVNGGQFANIQGRIGDRPAMKLEPLGSGLHVIAYQSNTSLIEYNEWEKFQKFVDHKDLGDAAASHAERGLPDSGFSEAYSRYSKSLISVDGGEGNDRKLGFTTEIVALDNPYTSPDLTEMRLQLYYGADVRADEQIEIFEKAKDGAVNITLVRTDENGIATIPVQPGHSYMADAVVLREPSEQLAADTGAVWETLWANLTWAVPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M647</accession>
    <name>A0A1M5M647_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Pseudouridine-5'-phosphate glycosidase</fullName>
            <shortName evidence="6">PsiMP glycosidase</shortName>
            <ecNumber evidence="6">4.2.1.70</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">psuG</name>
        <name evidence="7" type="ORF">SAMN05444003_0657</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the reversible cleavage of pseudouridine 5'-phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>D-ribose 5-phosphate + uracil = H2O + psi-UMP</text>
            <dbReference type="Rhea" id="RHEA:18337"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:17568"/>
            <dbReference type="ChEBI" id="CHEBI:58380"/>
            <dbReference type="ChEBI" id="CHEBI:78346"/>
            <dbReference type="EC" id="4.2.1.70"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="6">Binds 1 Mn(2+) ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homotrimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the pseudouridine-5'-phosphate glycosidase family.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.70" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72710.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899243.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0657"/>
    <dbReference type="EnsemblBacteria" id="SHG72710">
        <property type="protein sequence ID" value="SHG72710"/>
        <property type="gene ID" value="SAMN05444003_0657"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016798">
        <property type="term" value="F:hydrolase activity, acting on glycosyl bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004730">
        <property type="term" value="F:pseudouridylate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046113">
        <property type="term" value="P:nucleobase catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1790.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01876">
        <property type="entry name" value="PsiMP_glycosidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022830">
        <property type="entry name" value="Indigdn_synthA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007342">
        <property type="entry name" value="PsuG"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42909">
        <property type="entry name" value="PTHR42909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04227">
        <property type="entry name" value="Indigoidine_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110581">
        <property type="entry name" value="SSF110581"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6 7" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="2 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 6" id="KW-0456">Lyase</keyword>
    <keyword evidence="3 6" id="KW-0464">Manganese</keyword>
    <keyword evidence="1 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="139"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="6">
        <location>
            <position position="24"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="6">
        <location>
            <position position="158"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="85"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="105"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="137"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01876"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG72710.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="301" mass="31196" checksum="707FAEDB451BFDB0" modified="2017-03-15" version="1">MIPIAYSAEVAAARETNAPIVALESTIITHGMPYPQNVQTAELVESDVRAAGSTPATIAVLDGTLHIGLEPEQLLQLGQANDVAKLSRADMAACIAQGGNGATTVAATMIAAHMAGIKVFATGGIGGVHKGAENSFDISADLQELAQTPVTVVAAGAKAILDLPKTFEVLETLGVPVIAFGQDTLPAFWSRTSEIPAPLRMDTAADVAQAQLMRAAMGVSGGQLICNPIPANDEISVEVLSPIISQALTEAEVQGISAKDVTPFLLGRIFELTKGRSLDANIALVRNNARLAAEISIKMQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M8J8</accession>
    <name>A0A1M5M8J8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Two component transcriptional regulator, winged helix family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0694</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73556.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899307.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0694"/>
    <dbReference type="EnsemblBacteria" id="SHG73556">
        <property type="protein sequence ID" value="SHG73556"/>
        <property type="gene ID" value="SAMN05444003_0694"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="3">
        <location>
            <begin position="2"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="4">
        <location>
            <begin position="124"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="2">
        <location>
            <begin position="124"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG73556.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="237" mass="26499" checksum="ED0D03F11A13CCDD" modified="2017-03-15" version="1">MRVLLVEDDPTTAKSIELMLSHASLNVYTTEYGEEGVDLAKLYDYDLILLDINLPDMTGHEVLRQLRLARVDTPILILLGEDDTESKLCGFGFGADDCLTKPFLREELIARIHAIIRRSKGHAQSIIKTGAVNVNLDAKTVDVQGNTVHLTCKGYQILELLSLRKGTSLTKEMFLNHLYGGMDEPELKIIDVFICKLRKKLSEATGGQNFIETVWGRGYVLRDPEPKQVKQPMAVTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MFE9</accession>
    <name>A0A1M5MFE9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Predicted metal-binding membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0805</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76025.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0805"/>
    <dbReference type="EnsemblBacteria" id="SHG76025">
        <property type="protein sequence ID" value="SHG76025"/>
        <property type="gene ID" value="SAMN05444003_0805"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018688">
        <property type="entry name" value="DUF2182_TM_metal-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09948">
        <property type="entry name" value="DUF2182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="62"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="106"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="135"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="186"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="240"/>
            <end position="257"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG76025.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="258" mass="28288" checksum="1073CF653656AD46" modified="2017-03-15" version="1">MSHIIRSSLWLTFFAAILAAWWVMYMMSVDMDLDWIGRPGPMGEAMRQMDPRMPMYMPMANFGPLFAMWAIMMAAMMLPTMVPTLRAYEDLMVSANGTRAGWAGVLLGYFIVWVAFAALIAGVQLALLFGGWIDMLGIATNVWLSVILLIAVGLFQFTKAKEVCHGVCHSPTTYFLTRWRTGFSGGLRMGLGLGAFCVGCCWGFMALGFVGGVMSLLWMGAATFFMVLEKLPQIGHRVTKPLGVGLILGGIGLAVWSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MG77</accession>
    <name>A0A1M5MG77_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0819</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76378.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899503.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG76378">
        <property type="protein sequence ID" value="SHG76378"/>
        <property type="gene ID" value="SAMN05444003_0819"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="32"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG76378.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="70" mass="7344" checksum="EB2816941A591F94" modified="2017-03-15" version="1">MPLNVLFLILVNVISAAAFTVWVATSLVSPVSVSPILGLTVLSALALAGSLLLRVASKRHETTENDQAKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MH46</accession>
    <name>A0A1M5MH46_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">SCP-2 sterol transfer family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0830</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0830"/>
    <dbReference type="EnsemblBacteria" id="SHG76640">
        <property type="protein sequence ID" value="SHG76640"/>
        <property type="gene ID" value="SAMN05444003_0830"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1050.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003033">
        <property type="entry name" value="SCP2_sterol-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036527">
        <property type="entry name" value="SCP2_sterol-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02036">
        <property type="entry name" value="SCP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55718">
        <property type="entry name" value="SSF55718"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SCP2" evidence="1">
        <location>
            <begin position="44"/>
            <end position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02036"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG76640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="101" mass="11098" checksum="EB89C9AF4A3342F6" modified="2017-03-15" version="1">MTTLTLTPKAMLDVISARAKDRIKGSVRLEMPEFATFYVDENGAIESDQDADITLTAKAQVFYEISMGEQNPATAFMTRKLKVDGNPMRALKIGELLSTPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MHA0</accession>
    <name>A0A1M5MHA0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Isocitrate dehydrogenase [NADP]</fullName>
            <ecNumber evidence="8">1.1.1.42</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">SAMN05444003_0827</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>D-threo-isocitrate + NADP(+) = 2-oxoglutarate + CO2 + NADPH</text>
            <dbReference type="Rhea" id="RHEA:19629"/>
            <dbReference type="ChEBI" id="CHEBI:15562"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.1.1.42"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8 11">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="8 11">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="8 11">Binds 1 Mg(2+) or Mn(2+) ion per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the isocitrate and isopropylmalate dehydrogenases family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.42" evidence="8"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76561.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899515.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0827"/>
    <dbReference type="EnsemblBacteria" id="SHG76561">
        <property type="protein sequence ID" value="SHG76561"/>
        <property type="gene ID" value="SAMN05444003_0827"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004450">
        <property type="term" value="F:isocitrate dehydrogenase (NADP+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006102">
        <property type="term" value="P:isocitrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019818">
        <property type="entry name" value="IsoCit/isopropylmalate_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004790">
        <property type="entry name" value="Isocitrate_DH_NADP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024084">
        <property type="entry name" value="IsoPropMal-DH-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11822">
        <property type="entry name" value="PTHR11822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00180">
        <property type="entry name" value="Iso_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000108">
        <property type="entry name" value="IDH_NADP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01329">
        <property type="entry name" value="Iso_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00127">
        <property type="entry name" value="nadp_idh_euk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00470">
        <property type="entry name" value="IDH_IMDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8 11" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7 8 11" id="KW-0464">Manganese</keyword>
    <keyword evidence="3 8 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 8 12" id="KW-0521">NADP</keyword>
    <keyword evidence="6 8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="domain" description="Iso_dh" evidence="13">
        <location>
            <begin position="9"/>
            <end position="394"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="10">
        <location>
            <begin position="94"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <begin position="75"/>
            <end position="77"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="77"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="82"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="109"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="132"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="258"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <begin position="308"/>
            <end position="313"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="326"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="site" description="Critical for catalysis" evidence="9">
        <location>
            <position position="139"/>
        </location>
    </feature>
    <feature type="site" description="Critical for catalysis" evidence="9">
        <location>
            <position position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRNR" id="PIRNR000108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000108-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR000108-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR000108-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR000108-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="SMART" id="SM01329"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="SHG76561.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="402" mass="45029" checksum="E0F9194E45578026" modified="2017-03-15" version="1">MSKIKVENPIVELDGDEMTRIIWDFIKKKLILPYLDVDLLYYDLGIEARDDTNDQITIDAAEKIKEIGVGVKCATITPDEARVEEFGLKEMWRSPNGTIRNILGGVVFRAPIICKNVPRLVPGWTQPIVIGRHAFGDQYKATDMKFPGPGKLTMKFVGEDGTVIEHEVYDAPSSGVYMGMYNLDKSIEDFARASFNYGLSLGWPVYLSTKNTILKQYDGQFLLIFEQIFQEEFKAQFDEAGIEYQHRLIDDMVASAMKWSGGFVWACKNYDGDVQSDTVAQGFGSLGLMTSQLMTPDGKVVEAEAAHGTVTRHYRQHQRGEATSTNSIASIYAWTGAIKHRAKLDDNEALRTFAETLEKVIINTVESGYMTKDLALLVGPDQGWLTTEGFLEKIDENLQAAM</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MIB8</accession>
    <name>A0A1M5MIB8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Maltose ABC transporter membrane protein /trehalose ABC transporter membrane protein /sucrose ABC transporter membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0851</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77174.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899551.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0851"/>
    <dbReference type="EnsemblBacteria" id="SHG77174">
        <property type="protein sequence ID" value="SHG77174"/>
        <property type="gene ID" value="SAMN05444003_0851"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="184"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="212"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="246"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="290"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="352"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="178"/>
            <end position="371"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG77174.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="385" mass="42192" checksum="FF762911A267B218" modified="2017-03-15" version="1">MDGLSGQKPIVVWLLNISVVLIVLLWLFPTLGLFVSSFRTGDQITASGWWSAMFPAEQTLQIRAADPDEFRVETSDGVFVVEGQIFGDEPFEGTIQAWSTSSRRLGENAPGDTYDMGDGESFTLNADGTYIWQGNDDQISGRAQRVFIDAETPPEFTLDNYNFVLFDEDNSEGMMKAFLNTLTVVIPATVIPILIAAFAAYALAWMDFPGRALLIAAVVGLLVVPLQLALIPLLSFHNSIGIGKGYLGVWLAHTGFGLPLAIYLLRNYMVGLPRDIIENAKVDGATDFQIFVKIILPLSFPALASFAIFQFLWTWNDLLVALVFLIDASGQTTVMTKQIVELLGTRGGDWEILATSAFVSIAVPLVVFFAMQRYLVRGLLAGSVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MNE1</accession>
    <name>A0A1M5MNE1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 10">3-oxoacyl-[acyl-carrier-protein] synthase 2</fullName>
            <ecNumber evidence="3 10">2.3.1.179</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">SAMN05444003_0900</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Involved in the type II fatty acid elongation cycle. Catalyzes the elongation of a wide range of acyl-ACP by the addition of two carbons from malonyl-ACP to an acyl acceptor. Can efficiently catalyze the conversion of palmitoleoyl-ACP (cis-hexadec-9-enoyl-ACP) to cis-vaccenoyl-ACP (cis-octadec-11-enoyl-ACP), an essential step in the thermal regulation of fatty acid composition.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>(9Z)-hexadecenoyl-[ACP] + H(+) + malonyl-[ACP] = 3-oxo-(11Z)-octadecenoyl-[ACP] + CO2 + holo-[ACP]</text>
            <dbReference type="Rhea" id="RHEA:55040"/>
            <dbReference type="Rhea" id="RHEA-COMP:9623"/>
            <dbReference type="Rhea" id="RHEA-COMP:9685"/>
            <dbReference type="Rhea" id="RHEA-COMP:10800"/>
            <dbReference type="Rhea" id="RHEA-COMP:14074"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:64479"/>
            <dbReference type="ChEBI" id="CHEBI:78449"/>
            <dbReference type="ChEBI" id="CHEBI:83989"/>
            <dbReference type="ChEBI" id="CHEBI:138538"/>
            <dbReference type="EC" id="2.3.1.179"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>a fatty acyl-[ACP] + H(+) + malonyl-[ACP] = a 3-oxoacyl-[ACP] + CO2 + holo-[ACP]</text>
            <dbReference type="Rhea" id="RHEA:22836"/>
            <dbReference type="Rhea" id="RHEA-COMP:9623"/>
            <dbReference type="Rhea" id="RHEA-COMP:9685"/>
            <dbReference type="Rhea" id="RHEA-COMP:9916"/>
            <dbReference type="Rhea" id="RHEA-COMP:14125"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:64479"/>
            <dbReference type="ChEBI" id="CHEBI:78449"/>
            <dbReference type="ChEBI" id="CHEBI:78776"/>
            <dbReference type="ChEBI" id="CHEBI:138651"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 10">Lipid metabolism; fatty acid biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 10 12">Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.179" evidence="3 10"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78293.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899611.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0900"/>
    <dbReference type="EnsemblBacteria" id="SHG78293">
        <property type="protein sequence ID" value="SHG78293"/>
        <property type="gene ID" value="SAMN05444003_0900"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00094"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004315">
        <property type="term" value="F:3-oxoacyl-[acyl-carrier-protein] synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00834">
        <property type="entry name" value="KAS_I_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017568">
        <property type="entry name" value="3-oxoacyl-ACP_synth-2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000794">
        <property type="entry name" value="Beta-ketoacyl_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018201">
        <property type="entry name" value="Ketoacyl_synth_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014031">
        <property type="entry name" value="Ketoacyl_synth_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014030">
        <property type="entry name" value="Ketoacyl_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020841">
        <property type="entry name" value="PKS_Beta-ketoAc_synthase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11712">
        <property type="entry name" value="PTHR11712"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00109">
        <property type="entry name" value="ketoacyl-synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02801">
        <property type="entry name" value="Ketoacyl-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000447">
        <property type="entry name" value="KAS_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00825">
        <property type="entry name" value="PKS_KS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03150">
        <property type="entry name" value="fabF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00606">
        <property type="entry name" value="B_KETOACYL_SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 10" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="8 10" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="6" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="5 10" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10 12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PKS_KS" evidence="13">
        <location>
            <begin position="4"/>
            <end position="416"/>
        </location>
    </feature>
    <feature type="active site" evidence="11">
        <location>
            <position position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012356"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00014657"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRNR" id="PIRNR000447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR000447-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU003694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="SMART" id="SM00825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="SHG78293.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="420" mass="43800" checksum="C216E8990ED55DFE" modified="2017-03-15" version="1">MRRVVVTGLGLVTPLADGVEESWKRILDGQSGAGTITGFDPEGLATTYACEVPLGDGSDGTFNADKYMDPKERRKVDTFIVFGMAAAQQAIEDSGWMPEDNESLERTGILIGSGIGGLNSIANASLILEEKGPRRISPFFVPGALINLISGQVSIKYGFKGPNHSVVTACSTGAHAIGDASRLIQHGDADVMVAGGAEAAICRLGIAGFNACKALSTERAEEPTKASRPWDKDRDGFVMGEGAGIVILEEYEHAKARGAKIYGEVLGYGLSGDAHHITAPPPDHEGAERAMKAACRDAGIEPSQIDYVNAHGTSTMADTIELGAVERLVGPEAAAKLTMSSTKSATGHLLGAAGAIEAIFSILAIRDQVAPPTINLDNVDAETTVDLCANSKREKEINIALSNSFGFGGTNASVVFGKVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MPM5</accession>
    <name>A0A1M5MPM5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Heme exporter protein A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_0944</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79251.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899685.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0944"/>
    <dbReference type="EnsemblBacteria" id="SHG79251">
        <property type="protein sequence ID" value="SHG79251"/>
        <property type="gene ID" value="SAMN05444003_0944"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015439">
        <property type="term" value="F:ABC-type heme transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017004">
        <property type="term" value="P:cytochrome complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005895">
        <property type="entry name" value="ABC_transptr_haem_export_CcmA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43499">
        <property type="entry name" value="PTHR43499"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01189">
        <property type="entry name" value="ccmA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0201">Cytochrome c-type biogenesis</keyword>
    <keyword evidence="1 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="3"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="35"/>
            <end position="42"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022748"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG79251.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="204" mass="21801" checksum="5F2CEB58E0551FF7" modified="2017-03-15" version="1">MTLSVRNLTISRGGLPLLECVSIDVPAGEALILRGPNGVGKTSLLRTLAGLQEAEAGEIDADPDELLYASHADGVKSQLTVVENLTFWAEVYGQTVPEEVYEHFELADLKSRLAGTLSAGQKRRLGLARLGVINRKVLLLDEPTVSLDQVSVKRFASFLQTTHLAAGGSALIATHIDLGLDAPTYDLSQNIAAPTPLDQDEAFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MSS5</accession>
    <name>A0A1M5MSS5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Hint domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0981</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0981"/>
    <dbReference type="EnsemblBacteria" id="SHG79969">
        <property type="protein sequence ID" value="SHG79969"/>
        <property type="gene ID" value="SAMN05444003_0981"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028992">
        <property type="entry name" value="Hedgehog/Intein_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003587">
        <property type="entry name" value="Hint_dom_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036844">
        <property type="entry name" value="Hint_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13403">
        <property type="entry name" value="Hint_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00306">
        <property type="entry name" value="HintN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51294">
        <property type="entry name" value="SSF51294"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HintN" evidence="1">
        <location>
            <begin position="143"/>
            <end position="252"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG79969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="329" mass="36099" checksum="3D3C24D9B3FE8769" modified="2017-03-15" version="1">MATNSSVQTISVYVSDDFPVSEGVAQSEGMSFADDLVLDDIYRLWNRRERRALSLWVDDTGSFRVAGDSPTGRAGNQVVLDSCVTVMGTDSSTQEILLLVELEDGCVEEVYLLPLAHLIPQADYRLVRVDRHAATQRFAEVACVSFSKGTHITMGNGAQVPIEDLKVGDRVLTRDEGPQPIRWIGQTTIRATGDFAPILITKGALHNANDLLVSPDHRLFVYQRQDKLGTGRSDVLVKVGNLVDGERVIQQPGGYVDYFQLLFDSHQIIYAEGIAAESLLIDARNRAAVPDSFSGNEPQPTKDHLRYEVSASLLPSTDAVRLLRKAASS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MVY3</accession>
    <name>A0A1M5MVY3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Protein-S-isoprenylcysteine O-methyltransferase Ste14</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_1050</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81367.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899788.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1050"/>
    <dbReference type="EnsemblBacteria" id="SHG81367">
        <property type="protein sequence ID" value="SHG81367"/>
        <property type="gene ID" value="SAMN05444003_1050"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007318">
        <property type="entry name" value="Phopholipid_MeTrfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04191">
        <property type="entry name" value="PEMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="37"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="105"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG81367.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="148" mass="16901" checksum="BE47CFA7556B5958" modified="2017-03-15" version="1">MKWLDIPPVWLAGMAFLTWHSRGPLGALSFGYGIAQWIGAAMVAVGLILMVLAVLRMQAHRTTPIPHMSPNALVTEGVFALTRNPIYLGDIFILSRLILRWNAPLAVPLVFLFQFILLRRFILPEEARMKEHFGAEFDQYAEKTRRWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MWW0</accession>
    <name>A0A1M5MWW0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">TatD DNase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1070</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the metallo-dependent hydrolases superfamily. TatD-type hydrolase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81788.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899806.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1070"/>
    <dbReference type="EnsemblBacteria" id="SHG81788">
        <property type="protein sequence ID" value="SHG81788"/>
        <property type="gene ID" value="SAMN05444003_1070"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004536">
        <property type="term" value="F:deoxyribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01310">
        <property type="entry name" value="TatD_DNAse"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018228">
        <property type="entry name" value="DNase_TatD-rel_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015991">
        <property type="entry name" value="Hydrolase_TatD-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001130">
        <property type="entry name" value="TatD-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01026">
        <property type="entry name" value="TatD_DNase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005902">
        <property type="entry name" value="DNase_TatD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00010">
        <property type="entry name" value="TIGR00010"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01137">
        <property type="entry name" value="TATD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01090">
        <property type="entry name" value="TATD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009275"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG81788.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="262" mass="28979" checksum="2DF8808E8140FC9D" modified="2017-03-15" version="1">MSNPEIVDSHCHLDFPDFEGERADIIKRAAEAGVARMVTICTRLRLEPEVRTIAEEFDNVYYAAGTHPMSAADEPLATVDELVALAQHPKFVGIGETGLDYHYTAESKDIQQQSLRIHIDAARETGLPLIIHARAADDDMARILRESYDNGAYRCVMHCFSSSAALAKSALDMDFYLSMSGITAFPKSQELRDIFATAPIDRILVETDSPYLAPPPFRGKRNEPAYTAHTAKVGADVFGVSYEQFAAQTTANFDRLFWKAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N0Y8</accession>
    <name>A0A1M5N0Y8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Pseudouridine synthase</fullName>
            <ecNumber evidence="3">5.4.99.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1129</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Responsible for synthesis of pseudouridine from uracil.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>a uridine in RNA = a pseudouridine in RNA</text>
            <dbReference type="Rhea" id="RHEA:48348"/>
            <dbReference type="Rhea" id="RHEA-COMP:12068"/>
            <dbReference type="Rhea" id="RHEA-COMP:12069"/>
            <dbReference type="ChEBI" id="CHEBI:65314"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the pseudouridine synthase RluA family.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.-" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83224.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1129"/>
    <dbReference type="EnsemblBacteria" id="SHG83224">
        <property type="protein sequence ID" value="SHG83224"/>
        <property type="gene ID" value="SAMN05444003_1129"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0120159">
        <property type="term" value="F:rRNA pseudouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000455">
        <property type="term" value="P:enzyme-directed rRNA pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd02869">
        <property type="entry name" value="PseudoU_synth_RluA_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00165">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020103">
        <property type="entry name" value="PsdUridine_synth_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006225">
        <property type="entry name" value="PsdUridine_synth_RluC/D"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006224">
        <property type="entry name" value="PsdUridine_synth_RluC/D_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006145">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002942">
        <property type="entry name" value="S4_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036986">
        <property type="entry name" value="S4_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00849">
        <property type="entry name" value="PseudoU_synth_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55120">
        <property type="entry name" value="SSF55120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00005">
        <property type="entry name" value="rluA_subfam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01129">
        <property type="entry name" value="PSI_RLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PseudoU_synth_2" evidence="4">
        <location>
            <begin position="118"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010876"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR606225-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU362028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG83224.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="368" mass="39399" checksum="546FD28438D6C637" modified="2017-03-15" version="1">MVPLLFYVLALLAEVAASGGSILAKMIERIVSFEIGPNPPKRLDKALARDVPADASFSRSRLVKLLESGAVSVDGAVLDQPRVQVPEGAVVEITVREAEESHIEGEDISLQIVFEDDDLIVVNKPAGMVVHPAPGTPSGTLVNALIHHCGDSLSGVGGSKRPGIVHRIDKETSGLLVVAKSDAAHHGLADQFAAHSVERRYLAICYGAPDSNDPRLRGVKGVNFESGNILKVQTFLDRHKTDRQRQAVFFDRGRHAVTRARIVESLGTPPAAALIECWLETGRTHQIRVHLAHCGHSLIGDPVYGGKRKLSAKAIGQAGVEAASQFGRQALHAATLGFVHPVTGVDLLFEADLPKDMVELLSKMRGQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N4I8</accession>
    <name>A0A1M5N4I8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">TIGR02453 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1185</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84484.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899903.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG84484">
        <property type="protein sequence ID" value="SHG84484"/>
        <property type="gene ID" value="SAMN05444003_1185"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012808">
        <property type="entry name" value="CHP02453"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015996">
        <property type="entry name" value="UCP028451"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36452">
        <property type="entry name" value="PTHR36452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09365">
        <property type="entry name" value="DUF2461"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF028451">
        <property type="entry name" value="UCP028451"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02453">
        <property type="entry name" value="TIGR02453"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG84484.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="212" mass="24132" checksum="781276DC1A79FAEA" modified="2017-03-15" version="1">MSDIIKTARAFYSDLHANNKKDWWDENRGTYDDVLKPFALSFLDQLAPQLADLSDTTVKSKLFRPHRDVRFSKDKTPYKTHMNMMWRLEADAPQSPVFFFGIGLDYVTAGAGMMGFEKPVLENWRQFADLDHKRLLGIFDDLKTKGYGFREPALKRVPNAYDKDHPAGELLRMKGVVCSKDIGTPADLEGTVMAAFKELWPLNALLIQVAEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N7L0</accession>
    <name>A0A1M5N7L0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1208</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85003.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899922.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1208"/>
    <dbReference type="EnsemblBacteria" id="SHG85003">
        <property type="protein sequence ID" value="SHG85003"/>
        <property type="gene ID" value="SAMN05444003_1208"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012702873" evidence="2">
        <location>
            <begin position="20"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="98"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG85003.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="117" mass="12913" checksum="EA596732063C7AEC" modified="2017-03-15" version="1">MKKIALACLIATLAAPVSAEDEGTSLMEEGMQMILRGLVQEMEPAIDDIQSMMKEFGPAMDEFADELGPVLAELLKKADSLTHYESPELLPNGDIIIRRQPDAPPFEPDDENKEIEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N8Q8</accession>
    <name>A0A1M5N8Q8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">NitT/TauT family transport system substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1248</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85934.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899956.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1248"/>
    <dbReference type="EnsemblBacteria" id="SHG85934">
        <property type="protein sequence ID" value="SHG85934"/>
        <property type="gene ID" value="SAMN05444003_1248"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009228">
        <property type="term" value="P:thiamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027939">
        <property type="entry name" value="NMT1/THI5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015168">
        <property type="entry name" value="SsuA/THI5"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31528">
        <property type="entry name" value="PTHR31528"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09084">
        <property type="entry name" value="NMT1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009912541" evidence="1">
        <location>
            <begin position="21"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="domain" description="NMT1" evidence="2">
        <location>
            <begin position="40"/>
            <end position="252"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09084"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG85934.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="336" mass="35534" checksum="A248D889EB577039" modified="2017-03-15" version="1">MKHLTTLAAAFTVSASAVFADGHSTDVAFALDWKFEGPSAPYFAAIDNGHFEEAGLAVEITAGSGSLDAIPKVATGAFPIGFADINSLIRFLDQNPGAPVTAVMMVYDKPPFAVIGRKSLGVSEPSDLEGKVLGAPPPDGAWAQFPIFAAENDLDVDAITVEPVGFPTREPMLAEGNVAAITGFSFSSYLNLVRLGIPEDDISTILMADNGLDLYGNAIIVNTDYASENPGVVSGFLGAVAMGWKDAIADPASVMPALIERNPAADSDLEQRRLQLAIDANVMTDYVMENGMGTIDADRMAAAIEQIKIVYEFQNEPDASLYFTDVYLPDGGFPVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N9E4</accession>
    <name>A0A1M5N9E4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Membrane protein TerC, possibly involved in tellurium resistance</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1259</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86140.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899964.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1259"/>
    <dbReference type="EnsemblBacteria" id="SHG86140">
        <property type="protein sequence ID" value="SHG86140"/>
        <property type="gene ID" value="SAMN05444003_1259"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005496">
        <property type="entry name" value="Integral_membrane_TerC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03741">
        <property type="entry name" value="TerC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="45"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="88"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="129"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="154"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="191"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="247"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG86140.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="279" mass="30865" checksum="77578643AA7F6377" modified="2017-03-15" version="1">MADLLTLENATNLLMLCFLQAVLGFDNLLYISIESKRAPEGQQKAVRTWGIIIAVALRIVLLFTMIQLLASLSEPFWYFEWEGVLTGAVNFATCVFLFGGFFLMYTAVKEISHMLTIEHLDHDVEKRESKSAVQVVALIVMMNLIFSFDSVLSALAITDVFIILAIAIGLSGVAMLLLADRVSEFLEANRMYEVLGLFILLIVGVVLLGEAGQAAVHGVESMGVPHQEAKDLALKVFGFEIVPMSKATFYFSVVVLVIVEVLQTGYKRKLDAERKAARH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NA66</accession>
    <name>A0A1M5NA66_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">NitT/TauT family transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1246</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85893.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899954.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1246"/>
    <dbReference type="EnsemblBacteria" id="SHG85893">
        <property type="protein sequence ID" value="SHG85893"/>
        <property type="gene ID" value="SAMN05444003_1246"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="61"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="91"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="124"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="177"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="218"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="57"/>
            <end position="239"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG85893.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="255" mass="28410" checksum="075B4BBE91467178" modified="2017-03-15" version="1">MNPTFRKFFVPFVAIVIFLALWEGLVWVMGWPNYKMASPSDLIPAYQRYWDLFLIMGWQTLWRTVVGLIVAIIVGTAIGMIMGFSRTMRDALYPLLVGFNAIPKATVVPIVALMFVGAHDFNTILIAFMISFFPIAVSVSIGLSTLEPEYRDILRSLGASQTTIFWKIALPKTLPEFFGALKVAVTLAFIGTNLMEIVSPHGRGLGALFDSGKTNSDYPLMFAVLIALAALGIVLYYVVVWLERTFAGWAERESH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NB55</accession>
    <name>A0A1M5NB55_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">EcsC protein family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1295</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86760.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899998.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1295"/>
    <dbReference type="EnsemblBacteria" id="SHG86760">
        <property type="protein sequence ID" value="SHG86760"/>
        <property type="gene ID" value="SAMN05444003_1295"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024787">
        <property type="entry name" value="EcsC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR41260">
        <property type="entry name" value="PTHR41260"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12787">
        <property type="entry name" value="EcsC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG86760.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="270" mass="28086" checksum="D3F50E4A685E46D2" modified="2017-03-15" version="1">MTSDASDMKLVNPDPPIPKLSQAAEEEILALAQRQKKAAGILMKGINFVGGQVEDTLKLLPDGTKAQVDKVAKDALRTSYDVAAKSRTGRWAKVARSDRAHKLMATVSGAVGGLGGIPTAVAEIPLATTMIFRAVQGVSIQYGEDPNSAETRLQCLAVFGAGGPGSEDDGVDTAFLSARLGLTGAAVNTLIGKVAPKFAAILSQKLASQAVPVLGAAAGAGTNYAFTDYYVEVAHVHFGLRKLARTYGEEQVLDAFHTALVVGSIPVNRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NCG9</accession>
    <name>A0A1M5NCG9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Pilus assembly protein CpaF</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1326</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GSP E family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87208.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900022.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1326"/>
    <dbReference type="EnsemblBacteria" id="SHG87208">
        <property type="protein sequence ID" value="SHG87208"/>
        <property type="gene ID" value="SAMN05444003_1326"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001482">
        <property type="entry name" value="T2SS/T4SS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00437">
        <property type="entry name" value="T2SSE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="T2SP_E" evidence="3">
        <location>
            <begin position="126"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="27"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006611"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG87208.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="477" mass="52463" checksum="8B346E812EF31E6A" modified="2017-03-15" version="1">MFSKYKKPDQAKPEAAKPALAAVAPAEAAPKASLMKARPVKPAEAASGDREKKRKERLGEIKLELHKAVLDNLNLAALETATEQDLRSEINAIAQESLEEMGIVLNREERTTLSQDLFFEVTGLGPLETLLKDETVNDILVNGPQQIFVERAGKLELTDITFKDEKHLLRIIDKIVSAVGRRVDESNPYVDARLQDGSRFNAMVPPIAVDGSLVSIRKFKKDKLGIDDLVQFGAFTEEMAAYLQAAVATRLNVIVSGGTGSGKTTTLNALSSFIDNAERILTIEDTAELQLQQTHVGRMESRPPNVEGKGEVSPRDCLKNALRMRPDRIIVGETRGEEVIDMLQAMNTGHDGSMTTIHANSARDGVSRLENMIAMAGIEMPIKAVRSQISSAVNLIVQASRLQDGSRRMTSITEITGMEGDVISMQEVFRYQRVGLTPDNKIIGHFTATGVRSHYSDRFKLWGYDLPPAIFEPMVAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NMA8</accession>
    <name>A0A1M5NMA8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1497</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90670.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG90670">
        <property type="protein sequence ID" value="SHG90670"/>
        <property type="gene ID" value="SAMN05444003_1497"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG90670.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="70" mass="7515" checksum="6F93605BF9AD2D9E" modified="2017-03-15" version="1">MTELPRLKPLPIPEIHPIPEYAATGALAETFACIKQGLGMPWMGVIAMCLAAFTPDQSVSQQIGSMLCEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NNJ2</accession>
    <name>A0A1M5NNJ2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1518</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91144.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900192.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1518"/>
    <dbReference type="EnsemblBacteria" id="SHG91144">
        <property type="protein sequence ID" value="SHG91144"/>
        <property type="gene ID" value="SAMN05444003_1518"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001451">
        <property type="entry name" value="Hexapep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018357">
        <property type="entry name" value="Hexapep_transf_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017694">
        <property type="entry name" value="Phosphonate_tfrase_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00132">
        <property type="entry name" value="Hexapep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="SSF51161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03308">
        <property type="entry name" value="phn_thr-fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00101">
        <property type="entry name" value="HEXAPEP_TRANSFERASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG91144.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="220" mass="24279" checksum="B1E60B7DB06F808D" modified="2017-03-15" version="1">MTRLGNDPFIHPDCEITDSSFGSFVEIGRGSRIAHSSFDDYSYCDRYADVANAKIGKFANIAAFSRIGATDHPLHTASLHHFLYRSDDYWDDVGCDADFFAHRKSRISVIGHDTWIGAGAMIKPEVTLGDGAVVAAGAVVTKDVDPFTIVAGTPAKALRLRQPREIADRLIALAWWDWEHPKLRCALGDFRALSAEAFLEKYEASQMSEKLQTTVTDGLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NRL4</accession>
    <name>A0A1M5NRL4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Alpha/beta hydrolase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1558</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG92108.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900227.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1558"/>
    <dbReference type="EnsemblBacteria" id="SHG92108">
        <property type="protein sequence ID" value="SHG92108"/>
        <property type="gene ID" value="SAMN05444003_1558"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12697">
        <property type="entry name" value="Abhydrolase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009912678" evidence="1">
        <location>
            <begin position="22"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="domain" description="AB hydrolase-1" evidence="2">
        <location>
            <begin position="32"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG92108.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="250" mass="27211" checksum="72277ABAD4A533C5" modified="2017-03-15" version="1">MKRLLLFCAATLVATTPFTFADDIDEEATECVVLLHGLARSEISFAAMEFYLEAEGYAVVNEGYPSTEYTIQQLVDENVARDVAACGDRTVHFVTHSMGGILARAWLTNNRPVDMGRVVMLGPPNGGSELVDVFGDWDPFQWVNGPAGLQLGTEAESVPNQLELPDFEVGIIAGRTSLNPVYSSVIDGPDDGKVSVESTKLEGMTDHLVLPVTHTFMMNNPLVMAETVRFLQTGQFDDDLSLTDVIFGSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NRQ2</accession>
    <name>A0A1M5NRQ2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative tricarboxylic transport membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1549</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91869.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900218.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1549"/>
    <dbReference type="EnsemblBacteria" id="SHG91869">
        <property type="protein sequence ID" value="SHG91869"/>
        <property type="gene ID" value="SAMN05444003_1549"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012364191" evidence="2">
        <location>
            <begin position="27"/>
            <end position="327"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG91869.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="327" mass="33958" checksum="8219B03D76394CB4" modified="2017-03-15" version="1">MTTFKLGRRALLSAVAAFGLAGPSFADGHQVVDSIHFLIPGGAGGGWDGTARGTGEALTNAGLVGTASYENMSGGGGGKAIGFLIENADSNHGTLMVNSTPIVIRSLTGVFPHNFRDLTLVSGTIGDYAALVVGKDSDINSMDDLLAAYDADPSATAIGGGSVPGGMDHLVAAMVMEAAGKDALGVKYIPYDAGGNAMAALLSGEIAALSTGFSEAVDLANAGEVKIIGVTADERVDAYADAPTMKEQGIDTTFVNWRGFFGAPGLPDDKLAMYQDAIAKMYETPEWEEVRARNGWVNIHNPGDDFQSFLEEQEQVIGDLMKKLGFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NUX7</accession>
    <name>A0A1M5NUX7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Acetyl-coenzyme A synthetase</fullName>
            <shortName evidence="5">AcCoA synthetase</shortName>
            <shortName evidence="5">Acs</shortName>
            <ecNumber evidence="5">6.2.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Acetate--CoA ligase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">Acyl-activating enzyme</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">acsA</name>
        <name evidence="9" type="ORF">SAMN05444003_1606</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>acetate + ATP + CoA = acetyl-CoA + AMP + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:23176"/>
            <dbReference type="ChEBI" id="CHEBI:30089"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.2.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="PTM">
        <text evidence="5">Acetylated. Deacetylation by the SIR2-homolog deacetylase activates the enzyme.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the ATP-dependent AMP-binding enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="6.2.1.1" evidence="5"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93322.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900272.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1606"/>
    <dbReference type="EnsemblBacteria" id="SHG93322">
        <property type="protein sequence ID" value="SHG93322"/>
        <property type="gene ID" value="SAMN05444003_1606"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003987">
        <property type="term" value="F:acetate-CoA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016208">
        <property type="term" value="F:AMP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019427">
        <property type="term" value="P:acetyl-CoA biosynthetic process from acetate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01123">
        <property type="entry name" value="Ac_CoA_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011904">
        <property type="entry name" value="Ac_CoA_lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032387">
        <property type="entry name" value="ACAS_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16177">
        <property type="entry name" value="ACAS_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02188">
        <property type="entry name" value="Ac_CoA_lig_AcsA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0007">Acetylation</keyword>
    <keyword evidence="3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 5" id="KW-0436">Ligase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ACAS_N" evidence="8">
        <location>
            <begin position="24"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding" evidence="6">
        <location>
            <begin position="84"/>
            <end position="523"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="7">
        <location>
            <begin position="532"/>
            <end position="610"/>
        </location>
    </feature>
    <feature type="region of interest" description="Coenzyme A binding" evidence="5">
        <location>
            <begin position="192"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="310"/>
        </location>
        <ligand>
            <name>CoA</name>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="386"/>
            <end position="388"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="410"/>
            <end position="415"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="501"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="516"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="524"/>
        </location>
        <ligand>
            <name>CoA</name>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="527"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="538"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="540"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="543"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="585"/>
        </location>
        <ligand>
            <name>CoA</name>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-acetyllysine" evidence="5">
        <location>
            <position position="610"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022990"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF16177"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG93322.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="649" mass="71598" checksum="36B04C3A210B92AE" modified="2017-03-15" version="1">MSADTTYPPSDAMASGAHADKAKYDEMYAQSVSDPEGFWREHGQRVDWIKPYSKVKDVSYAPGNVSIKWFEDGSLNVAANCIDRHLAERGDQTAIIWEPDSPEDEAQHITYNQLHHDVSKFSNVLKELGVGKGDRVVIYMPMIPQAAYAMLACARIGAIHSVVFAGFSADALAARVNGSEAKVVITADEAPRGGRNTPLKTNADTAFEKIEVDCKMLVVRRTGGDVPMTAGRDYWLHEVEETVSADCPPEEMNAEDPLFILYTSGSTGMPKGVVHTTGGYIVYASMTHQYTFDYHDGDIFWCTADVGWVTGHSYIVYGPLANGATTVMFEGVPTYPDAGRFWAVCQKHKVNQFYTAPTAIRALMGQGDEWVSKYDLSDLKVLGTVGEPINPEAWNWYHEVVGGGNVPIVDTWWQTETGGHLLTPLPGATTTKPGSATLPFFGIQPVILEPTTGEEINDTAAEGVLCMKDSWPAQMRTVWGDHERFEKTYFADYKNYYFTGDGCRRDEDGYYWITGRVDDVINVSGHRMGTAEVESALVAHPKVAESAVVGYPHDIKGQGIYAYVTLMGGEEPSEELRKELETWVRSEIGPIAKPDLIQWAPGLPKTRSGKIMRRILRKIAEDDFGALGDTSTLADPSVVDDLIENRMNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NZ19</accession>
    <name>A0A1M5NZ19_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Small-conductance mechanosensitive channel</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">SAMN05444003_1645</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Mechanosensitive channel that participates in the regulation of osmotic pressure changes within the cell, opening in response to stretch forces in the membrane lipid bilayer, without the need for other proteins. Contributes to normal resistance to hypoosmotic shock. Forms an ion channel of 1.0 nanosiemens conductance with a slight preference for anions.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homoheptamer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell inner membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the MscS (TC 1.A.23) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG94223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900306.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1645"/>
    <dbReference type="EnsemblBacteria" id="SHG94223">
        <property type="protein sequence ID" value="SHG94223"/>
        <property type="gene ID" value="SAMN05444003_1645"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008381">
        <property type="term" value="F:mechanosensitive ion channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007055">
        <property type="entry name" value="BON_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010920">
        <property type="entry name" value="LSM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045275">
        <property type="entry name" value="MscS_archaea/bacteria_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006685">
        <property type="entry name" value="MscS_channel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011066">
        <property type="entry name" value="MscS_channel_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011014">
        <property type="entry name" value="MscS_channel_TM-2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023408">
        <property type="entry name" value="MscS_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30221">
        <property type="entry name" value="PTHR30221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04972">
        <property type="entry name" value="BON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00924">
        <property type="entry name" value="MS_channel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50182">
        <property type="entry name" value="SSF50182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82689">
        <property type="entry name" value="SSF82689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82861">
        <property type="entry name" value="SSF82861"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50914">
        <property type="entry name" value="BON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0407">Ion channel</keyword>
    <keyword evidence="8" id="KW-0406">Ion transport</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0732">Signal</keyword>
    <keyword evidence="6" id="KW-0346">Stress response</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="8" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="10">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012861347" description="Small-conductance mechanosensitive channel" evidence="10">
        <location>
            <begin position="23"/>
            <end position="430"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="121"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="167"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="190"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="domain" description="BON" evidence="11">
        <location>
            <begin position="35"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="410"/>
            <end position="430"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008017"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU369025"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50914"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG94223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="430" mass="47657" checksum="7766C42B63229367" modified="2017-03-15" version="1">MRIFIFALLTWAALCNPSFSQTADGPITTTNVEQLDAEIAIRIREILGELGNYDDVTVVVSDGVVTFRGTTASTAEATELTPLANRIEGVVAVKNEVTETAELVRRLNPTVERFQSRLDQFIVFLPLALIAFCAFALVVFIGFLIARLRQPWDRLAPNAFIADIYRQLVRISFVIFGVVIALDIMNATALLGTILGAAGIIGLAIGFAVRDTVENFIASVMLSFRQPFRPNDTVEINGDQGKVIRLTSRATILLSFDGNHIRIPNATVFKSRIINFSQNVERRFKFSLLIDRNCDLDHARTLVTETVQGLPFVVETPAAQCWIENLHTTGAEIVATGWINQHETSLLRAKGEAMRLVKRALQEDHIALVDSSQVVVLQNQNEQEEPAKSAEPQSVAEVEAIDERALDAMIESERVEEDAENLLREDALKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PNE1</accession>
    <name>A0A1M5PNE1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Zn-dependent alcohol dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1720</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the zinc-containing alcohol dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02743.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900534.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1720"/>
    <dbReference type="EnsemblBacteria" id="SHH02743">
        <property type="protein sequence ID" value="SHH02743"/>
        <property type="gene ID" value="SAMN05444003_1720"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016616">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002328">
        <property type="entry name" value="ADH_Zn_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00059">
        <property type="entry name" value="ADH_ZINC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="PKS_ER" evidence="3">
        <location>
            <begin position="13"/>
            <end position="359"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU361277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH02743.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="360" mass="37031" checksum="F81849980ABBC0CD" modified="2017-03-15" version="1">MSDIRAAVCNAFGQPLDIETLSLRAPEFGEIEVDLKACAICHSDITYMDGGWGGELPAVYGHEAAGRVSAVGAGVRGLALGDPVVVTLIRACGTCPSCASGAPVACETAPPPEGPISDGNGVQVVQAMNCGAFAEKVVVDQSQVVKLPDDMDLVTASVLACGVITGIGAVVNAAKLKAGQDVVVIGAGGVGLNAIQGARIAGARRIIAVDMSEEKLAVAKEFGATEGVLATDPKPWRKAKAAMGRGADAVFVTVGAIPAYDQAPQYLANGGQVIMVGMPHSGAQSTYEPVMLAATGQGMTGSKMGDVVIARDIPWMVDLYQQGRLKLDELVSRTWPLEEINEAIADTKTGSAKRNVIVFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PP53</accession>
    <name>A0A1M5PP53_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">5-hydroxyisourate hydrolase</fullName>
            <shortName evidence="6">HIU hydrolase</shortName>
            <shortName evidence="6">HIUHase</shortName>
            <ecNumber evidence="6">3.5.2.17</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_1757</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the hydrolysis of 5-hydroxyisourate (HIU) to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>5-hydroxyisourate + H2O = 5-hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:23736"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:18072"/>
            <dbReference type="ChEBI" id="CHEBI:58639"/>
            <dbReference type="EC" id="3.5.2.17"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 6">Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.5.2.17" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03508.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900563.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1757"/>
    <dbReference type="EnsemblBacteria" id="SHH03508">
        <property type="protein sequence ID" value="SHH03508"/>
        <property type="gene ID" value="SAMN05444003_1757"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033971">
        <property type="term" value="F:hydroxyisourate hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006144">
        <property type="term" value="P:purine nucleobase metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd05822">
        <property type="entry name" value="TLP_HIUase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014306">
        <property type="entry name" value="Hydroxyisourate_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023418">
        <property type="entry name" value="Thyroxine_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023416">
        <property type="entry name" value="Transthyretin/HIU_hydrolase_d"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036817">
        <property type="entry name" value="Transthyretin/HIU_hydrolase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023419">
        <property type="entry name" value="Transthyretin_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10395">
        <property type="entry name" value="PTHR10395"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00576">
        <property type="entry name" value="Transthyretin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49472">
        <property type="entry name" value="SSF49472"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02962">
        <property type="entry name" value="hdxy_isourate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00768">
        <property type="entry name" value="TRANSTHYRETIN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00769">
        <property type="entry name" value="TRANSTHYRETIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 6" id="KW-0659">Purine metabolism</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TR_THY" evidence="7">
        <location>
            <begin position="6"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU361270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH03508.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="119" mass="13018" checksum="C36AE1C9C430C0AE" modified="2017-03-15" version="1">MPNGFLTTHVLDTSRGLPAAGMEIALYRLNGEEREHLVTMTTNDDGRTDSPILPASDFATGQYELVFKAGAYLDAVGAPLEDPRFLSDIPIRFGISDPDSHYHVPLLISPFGYSTYRGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PQG7</accession>
    <name>A0A1M5PQG7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_1759</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the cytochrome ubiquinol oxidase subunit 2 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03543.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900565.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1759"/>
    <dbReference type="EnsemblBacteria" id="SHH03543">
        <property type="protein sequence ID" value="SHH03543"/>
        <property type="gene ID" value="SAMN05444003_1759"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003317">
        <property type="entry name" value="Cyt-d_oxidase_su2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43141">
        <property type="entry name" value="PTHR43141"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02322">
        <property type="entry name" value="Cyt_bd_oxida_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="87"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="122"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="155"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="188"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="225"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="259"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="301"/>
            <end position="326"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007543"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH03543.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="336" mass="37140" checksum="B263A98A3644BF4D" modified="2017-03-15" version="1">MYLFGDPTIWLPFVFAFLMGVAILIYVVLDGFDLGVGVLFPFADGEEKDRMIASIGPFWDANETWLVLAIGLMLVAFPAAHGEILTALYLPVTIMLIGLILRGVAFEFRVKAPAAYKRLWDNAFFAGSLITSLSQGFMLGLYVMGLDWTWGNVGFAMLTAVFLTVGYSFIGATWIIHKTDGGLQFKAVSWAQGGIWGLVLGIGAISLATPFVSDRIFDKWFSFPSILYLSPLPILSGLLVVWLWSMLRRMPFEADARSWLPFAAATALWLLAFAGMAYSFYPYVVPEKLTIYDAASAPESLFIILIGTCIVLPTILGYSVLAYTIFRGKATELRYD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PQX2</accession>
    <name>A0A1M5PQX2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Peptide deformylase</fullName>
            <shortName evidence="2">PDF</shortName>
            <ecNumber evidence="2">3.5.1.88</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Polypeptide deformylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">def</name>
        <name evidence="3" type="ORF">SAMN05444003_1796</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>H2O + N-terminal N-formyl-L-methionyl-[peptide] = formate + N-terminal L-methionyl-[peptide]</text>
            <dbReference type="Rhea" id="RHEA:24420"/>
            <dbReference type="Rhea" id="RHEA-COMP:10639"/>
            <dbReference type="Rhea" id="RHEA-COMP:10640"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:49298"/>
            <dbReference type="ChEBI" id="CHEBI:64731"/>
            <dbReference type="EC" id="3.5.1.88"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
        <text evidence="2">Binds 1 Fe(2+) ion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the polypeptide deformylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.88" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900596.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1796"/>
    <dbReference type="EnsemblBacteria" id="SHH04245">
        <property type="protein sequence ID" value="SHH04245"/>
        <property type="gene ID" value="SAMN05444003_1796"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042586">
        <property type="term" value="F:peptide deformylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00487">
        <property type="entry name" value="Pep_deformylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.45.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00163">
        <property type="entry name" value="Pep_deformylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023635">
        <property type="entry name" value="Peptide_deformylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036821">
        <property type="entry name" value="Peptide_deformylase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10458">
        <property type="entry name" value="PTHR10458"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01327">
        <property type="entry name" value="Pep_deformylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004749">
        <property type="entry name" value="Pep_def"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01576">
        <property type="entry name" value="PDEFORMYLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56420">
        <property type="entry name" value="SSF56420"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00079">
        <property type="entry name" value="pept_deformyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="2">
        <location>
            <position position="94"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="136"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="140"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH04245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="153" mass="16877" checksum="1C405CE55AE85F31" modified="2017-03-15" version="1">MGARAVVTVPNPVLREICTPVESFNQRLSDLTTDMLATMYEAKGRGLAAPQIGVTDRIFVMDCTWKEGETTPMVFVNPEILSQSEETSTYEEGCLSIPGQTTFVQRPAQVTVRWQTLEGDAREDQFGGFAATCIQHKLDHLNGVLCTDYEGQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PRR4</accession>
    <name>A0A1M5PRR4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Precorrin-6Y C5,15-methyltransferase (Decarboxylating)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1803</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; adenosylcobalamin biosynthesis.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04381.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900601.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1803"/>
    <dbReference type="EnsemblBacteria" id="SHH04381">
        <property type="protein sequence ID" value="SHH04381"/>
        <property type="gene ID" value="SAMN05444003_1803"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00148"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008276">
        <property type="term" value="F:protein methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd11644">
        <property type="entry name" value="Precorrin-6Y-MT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1010.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000878">
        <property type="entry name" value="4pyrrol_Mease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035996">
        <property type="entry name" value="4pyrrol_Methylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014777">
        <property type="entry name" value="4pyrrole_Mease_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012818">
        <property type="entry name" value="CbiE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006365">
        <property type="entry name" value="Cbl_synth_CobL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014008">
        <property type="entry name" value="Cbl_synth_MTase_CbiT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00590">
        <property type="entry name" value="TP_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036428">
        <property type="entry name" value="CobL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53790">
        <property type="entry name" value="SSF53790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02467">
        <property type="entry name" value="CbiE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02469">
        <property type="entry name" value="CbiT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="4" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TP_methylase" evidence="3">
        <location>
            <begin position="6"/>
            <end position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH04381.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="400" mass="42700" checksum="F2D8F8BDC27B1E9C" modified="2017-03-15" version="1">MTSPWLHIVGIGEDGLDGLTPATTAVVEAAEVIIGGQRHHDLAGRVSAERVAWPSPFDAMIDTIESHKGGRVVVLVTGDPLWFSVGARIGRAIDPNEIVYHPQLSAFQLASARMGWSLADVETLTVHGRPVEQMIAFIQPDARLLVLTTGAETPAQIAKFLAERGFGASKMSVLAAMGGENEQRFDGIAEDWAHEVPAFNTLAVECVAAPNAALLPRVPGLADVLFQSDGTMTKQEVRAATLAKLMPMRGALLWDIGCGSGSVAIEWMRAARYARAIGIEPRDDRRAMAGANAMALGTPKLSLVEGQAPQALDGLEAPDAIFIGGGLSRETFEAAWEALRPLGRLVANAVTLESEAELLALSKEFGGELVRLSVQRAEPVGRLTGWRPAMPVTQWSLVKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PSC9</accession>
    <name>A0A1M5PSC9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cobalamin biosynthesis protein CobW</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1816</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the SIMIBI class G3E GTPase family. CobW subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04642.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900613.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1816"/>
    <dbReference type="EnsemblBacteria" id="SHH04642">
        <property type="protein sequence ID" value="SHH04642"/>
        <property type="gene ID" value="SAMN05444003_1816"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012824">
        <property type="entry name" value="Cbl_biosynth_CobW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011629">
        <property type="entry name" value="Cbl_biosynth_CobW-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036627">
        <property type="entry name" value="CobW-likC_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003495">
        <property type="entry name" value="CobW/HypB/UreG_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02492">
        <property type="entry name" value="cobW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07683">
        <property type="entry name" value="CobW_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00833">
        <property type="entry name" value="CobW_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02475">
        <property type="entry name" value="CobW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CobW C-terminal" evidence="3">
        <location>
            <begin position="271"/>
            <end position="361"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="240"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH04642.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="361" mass="39128" checksum="B5B1CB972F3A954B" modified="2017-03-15" version="1">MPAKIPATVVTGFLGAGKTTLIRHMLQNAEGKKIALIINEFGDLGVDGDILKGCGEETCTEDDIVELSNGCICCTVADDFIPTMEQLLSRDDKPDHIVIETSGLALPQPLVRAFNWPGISTKVTVDGVVTVVDGRAVHDGQFAHNVAAVDAQRAQDENLDHETPLSELFEDQVACADMIVVNKTDLLDATEAEDLTSKLQSESRDGVQVVKAKMGALPVDVLLGQGIGAEADLDARHEIHHHHHHDDDHHHDDDHDHHHHDHEHAHGHDEFESFTVDRGEITDPNAFAEQVANVIRSHNILRLKGFAAVAGKPMRLTLQAVGPRVDTYYDQPFGDAPRATRLVVIGQAGLDEAAITAALQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PSL0</accession>
    <name>A0A1M5PSL0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1826</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04845.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900621.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1826"/>
    <dbReference type="EnsemblBacteria" id="SHH04845">
        <property type="protein sequence ID" value="SHH04845"/>
        <property type="gene ID" value="SAMN05444003_1826"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019253">
        <property type="entry name" value="DUF2244_TM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10003">
        <property type="entry name" value="DUF2244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="31"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="54"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH04845.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="166" mass="18994" checksum="25E89BD476C412F3" modified="2017-03-15" version="1">MPYEWSSEPPHQTTRWELSLWPYRSLLRKDFVIFIGATGALVLLPLLAVLGSPVLWGLLPFLLLMLGSIWFALHVSYKRGEVLEELRVDEAHAHLVRHNPNGQVQEWEANRYWVSVHLHPKDGPVENYITLRGGDREVEIGAFLDPAERLALYDELKSALPVDYSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PUN6</accession>
    <name>A0A1M5PUN6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Soluble lytic murein transglycosylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_1833</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the transglycosylase Slt family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the virb1 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04983.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900627.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1833"/>
    <dbReference type="EnsemblBacteria" id="SHH04983">
        <property type="protein sequence ID" value="SHH04983"/>
        <property type="gene ID" value="SAMN05444003_1833"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008933">
        <property type="term" value="F:lytic transglycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000270">
        <property type="term" value="P:peptidoglycan metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023346">
        <property type="entry name" value="Lysozyme-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008939">
        <property type="entry name" value="Lytic_TGlycosylase_superhlx_U"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000189">
        <property type="entry name" value="Transglyc_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008258">
        <property type="entry name" value="Transglycosylase_SLT_dom_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01464">
        <property type="entry name" value="SLT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48435">
        <property type="entry name" value="SSF48435"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53955">
        <property type="entry name" value="SSF53955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00922">
        <property type="entry name" value="TRANSGLYCOSYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012635450" evidence="4">
        <location>
            <begin position="19"/>
            <end position="680"/>
        </location>
    </feature>
    <feature type="domain" description="SLT" evidence="5">
        <location>
            <begin position="489"/>
            <end position="588"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH04983.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="680" mass="76128" checksum="69E4578735D7A7CB" modified="2017-03-15" version="1">MRTILLILALFGATAAVSQVMPEQAVEAVRLAGDDKWEEAEAAVQERLEDQVTADVVEWLRLRAGEGDFAEYRDFLARRPDWPGLSRIRSRGEEVIPEDADPGEVLLWYGDIRPRTGIGAVRLAQALEARGLNELAQDVIETAWVELRLTEEGQEAILERYSAVVEPKHPERVDNLLWRWRTEEAGWMLDLLPDDQRALAEARIAYIRNQSDLDEKVQAVPPALRDTPALQYDRFNWLADRRRYADARDLALSQSTSAEALGQPFRWSSWRRSIARREMREGSPQRAYRLASEHFLTEGSSFADLEWLAGYIALTYLNEPGAAIGHFQTARAAVDTPISIARMEYWTGRAFDVLGMADATAAYQRAAEHQSAFYGLMASEKLSRPLSAAWTGQQDDREWRETDLFENELVRAALTLLEAGERGAAVTFFAELGRTLDEEDLARLGGLLDEMGESFYELILGKQGVVRGVIVPSNYFPIHDLVVLDLPSEPELALSIARRESEFNAVVGSPVGALGLMQLMPATAEEVAGSLDLPYSRNRLTADWQYNARLGAQYLQGLEDRFGFSPVQIAAGYNAGPSRPEAWMSERGDPRLGDVDVIDWIEHIPFRETRNYVMRVTESIPIYQARLTGEVGPVQFTELLTGFKPLVRPIARPDFGIIGGSDGVVVRSAGDDQVRPRVRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PVU9</accession>
    <name>A0A1M5PVU9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1873</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05786.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900663.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1873"/>
    <dbReference type="EnsemblBacteria" id="SHH05786">
        <property type="protein sequence ID" value="SHH05786"/>
        <property type="gene ID" value="SAMN05444003_1873"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="39"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH05786.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="172" mass="19174" checksum="51EAD529D25AED37" modified="2017-03-15" version="1">MSDFLRPEARATLWRFRDVIGAAIMIMMGLWWSSTFYSPVRWIGWAIIGLGAVWALAAFQRLRFAQDGEGPGVVKVVERRLAYFGPLTGGVMEMDDAAKLELEPQAYPAAHWVLTSLTGDRLEIPVNAEGADVLFDLFASLPGIETSKMLATLNDTPDQRVVIWQLTKPLLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PWX9</accession>
    <name>A0A1M5PWX9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Molybdopterin molybdenumtransferase</fullName>
            <ecNumber evidence="7">2.10.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_1893</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 7">Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>adenylyl-molybdopterin + H(+) + molybdate = AMP + H2O + Mo-molybdopterin</text>
            <dbReference type="Rhea" id="RHEA:35047"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:36264"/>
            <dbReference type="ChEBI" id="CHEBI:62727"/>
            <dbReference type="ChEBI" id="CHEBI:71302"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.10.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3 7">Cofactor biosynthesis; molybdopterin biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 7">Belongs to the MoeA family.</text>
    </comment>
    <dbReference type="EC" id="2.10.1.1" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06196.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900679.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1893"/>
    <dbReference type="EnsemblBacteria" id="SHH06196">
        <property type="protein sequence ID" value="SHH06196"/>
        <property type="gene ID" value="SAMN05444003_1893"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00344"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061599">
        <property type="term" value="F:molybdopterin molybdotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032324">
        <property type="term" value="P:molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00887">
        <property type="entry name" value="MoeA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.340.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.980.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036425">
        <property type="entry name" value="MoaB/Mog-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001453">
        <property type="entry name" value="MoaB/Mog_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008284">
        <property type="entry name" value="MoCF_biosynth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038987">
        <property type="entry name" value="MoeA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005111">
        <property type="entry name" value="MoeA_C_domain_IV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036688">
        <property type="entry name" value="MoeA_C_domain_IV_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005110">
        <property type="entry name" value="MoeA_linker/N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036135">
        <property type="entry name" value="MoeA_linker/N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10192">
        <property type="entry name" value="PTHR10192"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00994">
        <property type="entry name" value="MoCF_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03454">
        <property type="entry name" value="MoeA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03453">
        <property type="entry name" value="MoeA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00852">
        <property type="entry name" value="MoCF_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53218">
        <property type="entry name" value="SSF53218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63867">
        <property type="entry name" value="SSF63867"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63882">
        <property type="entry name" value="SSF63882"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00177">
        <property type="entry name" value="molyb_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01079">
        <property type="entry name" value="MOCF_BIOSYNTHESIS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 7" id="KW-0500">Molybdenum</keyword>
    <keyword evidence="6 7" id="KW-0501">Molybdenum cofactor biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="MoCF_biosynth" evidence="8">
        <location>
            <begin position="476"/>
            <end position="613"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002901"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005046"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU365090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH06196.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="697" mass="74963" checksum="EE36DC834EEE27E0" modified="2017-03-15" version="1">MTFEAVVIVDWSGGNDRGAKPTKDAIWACVARDGSLAEPVYFRNRQVFEPWFHDLIAEEISAGRRVFAGFDFPFGYPQGFAKAVTGENDPFALWRWLEGRIVDAPATNNRFEVASELNALCEGAGPFWGNATKSDWPDLPRKGLARAGHGWPEKRQAEQLAKGAFTVWQLAGAGSVGSQTLMGLPVLERVRRAFGRHVSVWPLEPTEREVVLVEVWPSLLADHIAATLPEGEIKDRHQVRVLAQAISQLPEAAMSQMMAVPRTEEGWIFGLGHEETLKEAASLRPPPLRNDCFAMPQGAYWTPEAEALAHLRTHLAGVKAIERRAVADCAGLFLAEDVTAERSHPPTPNSAVDGYAVKGPIPEGAHVLPLVDGRAAAGDPFEGVVPEGHALRILTGAAVPEGVDTVILQEDVNSDRTQIAFHGPLKAGSNARKVGEDMTAGEVIFAKGRKLTPADLGTLTAAGVAEVAVFERLRVGVLSTGDELRNADESASDADIYDANRPMLLANSRSWGFEPVDLGRATDDREVLRGILDKASETCDAILTSGGASGGDEDHVSALLKDTGSFALWRIAIKPGRPLALGLWNEVPVFGLPGNPVAAQVCSLVFAHPALTVLAGGAWSEPAAFPLPANFSKSKKDGRVEYLRARVQEGRVHIFPSEGSGRISGLSWSTGLVRLPQEAATINEGDLVEFLPYATFQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-09-29" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PXK3</accession>
    <name>A0A1M5PXK3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1902</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06382.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900687.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH06382">
        <property type="protein sequence ID" value="SHH06382"/>
        <property type="gene ID" value="SAMN05444003_1902"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036641">
        <property type="entry name" value="HPT_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47226">
        <property type="entry name" value="SSF47226"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH06382.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="109" mass="12061" checksum="F96FCAEF1AC57286" modified="2017-03-15" version="1">MSDFTALLCSRGPDVAEDVVFAALEDMAAKIERLRLLWSESQLEDLRPLARRLHKISDGAGLTSLSAAVEAFRGAVTTENAVTMSATFQRIDRCLDASVETIWRVFDEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PXT7</accession>
    <name>A0A1M5PXT7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Ammonium transporter</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_1908</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the ammonia transporter channel (TC 1.A.11.2) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06490.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900891.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1908"/>
    <dbReference type="EnsemblBacteria" id="SHH06490">
        <property type="protein sequence ID" value="SHH06490"/>
        <property type="gene ID" value="SAMN05444003_1908"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008519">
        <property type="term" value="F:ammonium transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3430.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029020">
        <property type="entry name" value="Ammonium/urea_transptr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001905">
        <property type="entry name" value="Ammonium_transpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018047">
        <property type="entry name" value="Ammonium_transpt_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019879">
        <property type="entry name" value="Ammonium_transptr_marine"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024041">
        <property type="entry name" value="NH4_transpt_AmtB-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00909">
        <property type="entry name" value="Ammonium_transp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00836">
        <property type="entry name" value="amt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03644">
        <property type="entry name" value="marine_trans_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01219">
        <property type="entry name" value="AMMONIUM_TRANSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0924">Ammonia transport</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0732">Signal</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 8" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="9">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012997037" description="Ammonium transporter" evidence="9">
        <location>
            <begin position="23"/>
            <end position="436"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="32"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="77"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="133"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="157"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="194"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="234"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="271"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="301"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="325"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="355"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="385"/>
            <end position="403"/>
        </location>
    </feature>
    <feature type="domain" description="Ammonium_transp" evidence="10">
        <location>
            <begin position="42"/>
            <end position="430"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023177"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU362002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH06490.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="436" mass="45875" checksum="D9A9CD8A51E22B73" modified="2017-03-15" version="1">MKLNKLLPVSAAAILLPTLAFAQDAAPSFDEIGPYIMTTLLFCMAGFLVFFMAAGFAMLEGGLVRSKNVTMQMTKNIALFSIAAIMYWIVGFNTMYPGDFNGWFAIGGQTVLDPVGVAAADAALDYASVGSDFFFQLVFVAATASIVSGALAERIKLWPFLAFVVVLTGFMYPISGSWQWGGGWLSEAGFSDFAGSTVVHSVGGWAALAGAIVLGPRLGKYKDGKVNPMPGSNLALATLGTFILWLGWFGFNGGSQLAMGTVGDVSDVSRIFANTNMAAAAGAVTALILTQILYKKPDLTMVLNGALAGLVSITAEPLAPTLFGALWIGAIGGVIVVLTVPMLDKMKIDDVVGAIPVHLFAGIWGTIAVIFYNGDASLTTQITGIVAYGAFTFVASLIVWFILKAIMGIRVSEEDEMAGLDMSELGMEAYPEFSKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PXW2</accession>
    <name>A0A1M5PXW2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1918</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06648.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900699.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1918"/>
    <dbReference type="EnsemblBacteria" id="SHH06648">
        <property type="protein sequence ID" value="SHH06648"/>
        <property type="gene ID" value="SAMN05444003_1918"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007434">
        <property type="entry name" value="FemAB-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04339">
        <property type="entry name" value="FemAB_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH06648.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="392" mass="43973" checksum="BCF4C7E319379C3E" modified="2017-03-15" version="1">MTDTPVEIAAHADLTTVSEEDWDACAGALDGRPDDPFTTYRFLRALEVSGSVGPGSGWQPRYLTAHQDGQIIAAAPLYAKGHSQGEYIFDHNWAHAYENAGGRYYPKLQIAVPFTPATGRRFLTRPGFEVLGTSALTQGAVQIAAENSLSSLHATFCTEAEAIAGEEMGLLRRVGQQFHWVNNSYESFDDFLASLASRKRKNLRKERAQAQAFGGEIISLTGEQIQPEHWDAFWEFYQDTGHRKWGSPYLTRSFFEEAHAHLRDDILMVLAVRAGRPVAGALNFIGRDTLFGRYWGCTEHHPALHFELCYYQAIDFAIAQGLGKVEAGAQGEHKLARGYLPVPTYSLHWFRDEGFRDAVAKYLDAERDAVDHEIEILTSYGPFRKDNREDHQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q420</accession>
    <name>A0A1M5Q420_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Ribosome-associated protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2019</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the prokaryotic/mitochondrial release factor family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08551.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900779.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2019"/>
    <dbReference type="EnsemblBacteria" id="SHH08551">
        <property type="protein sequence ID" value="SHH08551"/>
        <property type="gene ID" value="SAMN05444003_2019"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003747">
        <property type="term" value="F:translation release factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000352">
        <property type="entry name" value="Pep_chain_release_fac_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045853">
        <property type="entry name" value="Pep_chain_release_fac_I_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00472">
        <property type="entry name" value="RF-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75620">
        <property type="entry name" value="SSF75620"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00745">
        <property type="entry name" value="RF_PROK_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RF_PROK_I" evidence="3">
        <location>
            <begin position="22"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="111"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="122"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010835"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS00745"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH08551.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="139" mass="15960" checksum="C78A025F9BE48BDE" modified="2017-03-15" version="1">MTLRINDQIEIADWEISEQFTRSSGPGGQNVNKVSTAVELRFEAERSPALTAAVKKRLRRIAGRRWTRDGAIVLFVKETRSQVRNREIARERLVEMIEKALVAPKRRIATRPTRGSVRRRLDGKKKRGEVKALRGKVEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q5R3</accession>
    <name>A0A1M5Q5R3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Chlorophyll synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_2053</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09210.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900810.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2053"/>
    <dbReference type="EnsemblBacteria" id="SHH09210">
        <property type="protein sequence ID" value="SHH09210"/>
        <property type="gene ID" value="SAMN05444003_2053"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016765">
        <property type="term" value="F:transferase activity, transferring alkyl or aryl (other than methyl) groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015995">
        <property type="term" value="P:chlorophyll biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd13958">
        <property type="entry name" value="PT_UbiA_chlorophyll"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.357.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006372">
        <property type="entry name" value="Chl_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000537">
        <property type="entry name" value="UbiA_prenyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044878">
        <property type="entry name" value="UbiA_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01040">
        <property type="entry name" value="UbiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01476">
        <property type="entry name" value="chlor_syn_BchG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0149">Chlorophyll biosynthesis</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="33"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="121"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="225"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="250"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="280"/>
            <end position="300"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH09210.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="302" mass="32148" checksum="F8496E10C445C9D1" modified="2017-03-15" version="1">MSIASDIPPIERRWPEPRAALTLIKPITWFPPMWAFLCGAVSSGASLIEGIWMVALGIILAGPIVCGMSQAANDWCDRHVDAINEPHRPIPSGRIPGRWGLWIALAMSVLSLVVGWQLGTWGFVATVAAVAAAWAYSAEPVRLKRSGWWGPGLVGISYETLPWITGAAVLSTGAPSTEILAIALLYGLGAHGIMTLNDFKALEGDRQMGVASLPVALGPERAAKLACWIMAVPQLIVITLLTLWDKPFHAAGVGVVLLAQLAAMRVMLRDPKAKAPWYNGTGVVLYISGMMIAAFALRGIGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q630</accession>
    <name>A0A1M5Q630_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2059</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09330.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH09330">
        <property type="protein sequence ID" value="SHH09330"/>
        <property type="gene ID" value="SAMN05444003_2059"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH09330.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="32" mass="3382" checksum="DBBCDCEA64A5A41E" modified="2017-03-15" version="1">MTLLVPFLLATGTGVAGSPHKGLYCDVIFFRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QI40</accession>
    <name>A0A1M5QI40_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, contains XRE-family HTH domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2126</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH13588.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900927.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2126"/>
    <dbReference type="EnsemblBacteria" id="SHH13588">
        <property type="protein sequence ID" value="SHH13588"/>
        <property type="gene ID" value="SAMN05444003_2126"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="16"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH13588.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="140" mass="15654" checksum="9CE819990E5DF96E" modified="2017-03-15" version="1">MARDLKAVFSAMGARLAIARNEVGLTQTAMADAIGVSHRAYHSYEKGQRGLPVEALVAISDKFDVDAAWILLGTKSVRAAHDFEALKRIEISLDQHLSEENIKIKSEKRGAIVARWYQSHVEGREVSDDDVHTWIELVRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QLP4</accession>
    <name>A0A1M5QLP4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acetyltransferase (GNAT) domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2181</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14711.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH14711">
        <property type="protein sequence ID" value="SHH14711"/>
        <property type="gene ID" value="SAMN05444003_2181"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="13"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH14711.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="172" mass="19907" checksum="D4E618CF6A1DF1CF" modified="2017-03-15" version="1">MTNLTLKLADTESDFDAAQHLCREWLKVHWEIYPDDWPKGDDHPMDSKRFGAIIEDLPNLHARPKGGILVAYLNDQPAGCVMYADAGDRSARFNRLFVSTSARGNAIGRKLLERMFEQMKSDCYKRAFFSSATFLPYVHEMYENAGFTLMPTPDDVPDIWRERVYFMERSLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QPJ1</accession>
    <name>A0A1M5QPJ1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PAS fold</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2246</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16032.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2246"/>
    <dbReference type="EnsemblBacteria" id="SHH16032">
        <property type="protein sequence ID" value="SHH16032"/>
        <property type="gene ID" value="SAMN05444003_2246"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PAS" evidence="1">
        <location>
            <begin position="257"/>
            <end position="341"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH16032.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="463" mass="51649" checksum="46DFEA41FBC8AC36" modified="2017-03-15" version="1">MVDSVLLILASLICFCAGMLFANRRRVSVTNDAANQIPARTAFLFEGEELIDATPTGKDLLAGLDTFGCDKRNLILLCEDEYPDLEMTWDSLESLESATLEHVTTGVSDLAIARSGERISIRFLYNPNSLGKTVQEDLLAARVQSLSEFMDKLPGMIWRQHSSGQILWANRQYQDASAKLARIQTDDDPAVSQMSLFSHTHATSKHLVGSNESFQHIDSNGQDHWFKVTSIPTDDGDLHIAIDATETVEARKAQTTSLRTFVQIFAQLSIGFAIFDENRQLSIYNPSISELSGLDPVFLTGKPTLLRLVEEMRQKGKTPEPKDFEDLRETIRKIERAAEGGTYESVWTLADGQSLRVTARPYHTGSIALLIEDVSSELALARRYRTEVTLYQDLFELVDKPTFLFSADGRFITNNERVTAKTIGPIGTIGNIFDFLEFLNSKTIPGRKLTIKTYPSRVRPASA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QS80</accession>
    <name>A0A1M5QS80_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NAD(P)H-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2276</name>
        <name evidence="3" type="ORF">SAMN05444003_2372</name>
    </gene>
    <organism evidence="2 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16599.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901158.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2276"/>
    <dbReference type="EnsemblBacteria" id="SHH16599">
        <property type="protein sequence ID" value="SHH16599"/>
        <property type="gene ID" value="SAMN05444003_2276"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH18640">
        <property type="protein sequence ID" value="SHH18640"/>
        <property type="gene ID" value="SAMN05444003_2372"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016040">
        <property type="entry name" value="NAD(P)-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13460">
        <property type="entry name" value="NAD_binding_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD(P)-bd_dom" evidence="1">
        <location>
            <begin position="7"/>
            <end position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH16599.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH18640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="209" mass="22795" checksum="0BE1E68B4571CFC4" modified="2017-03-15" version="1">MKVIVFGATGTVGRLAVENLLKAGHTVTAFARSPQNLNLNDPKLRLVAGDAMKLSDVTDAVAGQEAVVVTLGAGMSRKSKIRSQGTMNVIKAMQTHGVRRLIAQSTLGARDSWPTLNFWWKRVMFGALLAPVFRDHELQEQLVEASGLDWTIVRPGAFTDKATERAVIEDVPNTARGLDLKIARSELARFLTRQLSDRQYVGRAVGLSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-09-29" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QSI9</accession>
    <name>A0A1M5QSI9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Sulfotransferase domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2300</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901195.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH17105">
        <property type="protein sequence ID" value="SHH17105"/>
        <property type="gene ID" value="SAMN05444003_2300"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008146">
        <property type="term" value="F:sulfotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037359">
        <property type="entry name" value="NST/OST"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000863">
        <property type="entry name" value="Sulfotransferase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10605">
        <property type="entry name" value="PTHR10605"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00685">
        <property type="entry name" value="Sulfotransfer_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Sulfotransfer_1" evidence="2">
        <location>
            <begin position="4"/>
            <end position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH17105.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="243" mass="28658" checksum="848D0F895F6AA3C2" modified="2017-03-15" version="1">MHLPNLLIAGAQKSGTTWLHVALSQSKQVFGSKRKELNYFNKGQLGDIDTYRSNFPDKRGVKYYFESTPHYFRAIKGKVDIAERVSKTIPDAKIIVVLRDPVARYESAYIHHMMRGRFPYEPIIDNFSEDFGLIRLGQYAKNLTHWQKKMPDIGVFLYDDLLEDKVIFVDSIMSYLEIENDIRPEKLEFRRNDKSKKIKRAGWDQMPKMSPELRQKLYEYFQSDIDDLEVMIDRDLGAWRFDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QU29</accession>
    <name>A0A1M5QU29_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Putrescine transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2315</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17468.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901223.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2315"/>
    <dbReference type="EnsemblBacteria" id="SHH17468">
        <property type="protein sequence ID" value="SHH17468"/>
        <property type="gene ID" value="SAMN05444003_2315"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="7"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="67"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="100"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="130"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="178"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="232"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="61"/>
            <end position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH17468.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="266" mass="28888" checksum="05A6630677CC8408" modified="2017-03-15" version="1">MRRMTSFNVVSLTLGFAFLYIPMLILIIYSFNESKLVTVWAGFSIKWYGELLQNEAFLDAAWVTVKVGFFSSTIATVLGTMAAFVLVRSGRFFGRTLFSGMIYAPLVMPEVITGLSLLLLFISLSVDRGVFTIVLAHATFSMCYVSVVVSSRMATFDQSLEEAAYDLGCTGWDAFKSVTLPIIAPAVISGWLLAFTLSLDDLVIASFTAGPSSTTLPIKIFSSVRLGVSPEINALSTIIIGLVTVGVIVASITSKRALVRRQQETV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QUW4</accession>
    <name>A0A1M5QUW4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Chromosome partitioning protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2327</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901245.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2327"/>
    <dbReference type="EnsemblBacteria" id="SHH17721">
        <property type="protein sequence ID" value="SHH17721"/>
        <property type="gene ID" value="SAMN05444003_2327"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025669">
        <property type="entry name" value="AAA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13614">
        <property type="entry name" value="AAA_31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_31" evidence="1">
        <location>
            <begin position="135"/>
            <end position="329"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH17721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="462" mass="51697" checksum="E30D37D2F56D7B9F" modified="2017-03-15" version="1">MSSASKAPLPPYLNIDPATAAAKLSEPIDTTRFAKAAAFAAKGREDLAKRGHAPDGAKRLRRFSTWEVCRYLIPVAPSHFRRVLKANPDLPQGTGEGNSKWFTLDDVLTLRKHFASEGAADREYLPYRPEGLPAKIISVANFKGGVGKTSTAAHLAMSAALDGYKVLVIDLDSQGSMTSIMGGQVQDEWQTAFPLMAKDFAMHLEAEAREFRSETPQLDETLQEARNMSARDLIQATHWPNIDLIGAQLNLYWAEFQVPVWRMQSRSWPLWDALTNALSGEGILDDYDVILLDTPPALGYLTINALAAADILLVPLGASFLEFDSTGRFFDMLYSTFASIEDGENSVRRQQGLPEMTFEWDAVRAIVTRFDASQQTDLANVIQAYFGDFMTTYRQELTAMVGQAGENVNGIYEADYRDFNRDTYVRGRETFDRTWAEVKEVLLGTWWRDQQMMKAQEEQTNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QZZ2</accession>
    <name>A0A1M5QZZ2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AMP nucleosidase</fullName>
            <ecNumber evidence="1">3.2.2.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">amn</name>
        <name evidence="4" type="ORF">SAMN05444003_2416</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the hydrolysis of the N-glycosidic bond of AMP to form adenine and ribose 5-phosphate. Involved in regulation of AMP concentrations.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>AMP + H2O = adenine + D-ribose 5-phosphate</text>
            <dbReference type="Rhea" id="RHEA:20129"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16708"/>
            <dbReference type="ChEBI" id="CHEBI:78346"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="3.2.2.4"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the AMP nucleosidase family.</text>
    </comment>
    <dbReference type="EC" id="3.2.2.4" evidence="1"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19478.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901380.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2416"/>
    <dbReference type="EnsemblBacteria" id="SHH19478">
        <property type="protein sequence ID" value="SHH19478"/>
        <property type="gene ID" value="SAMN05444003_2416"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008714">
        <property type="term" value="F:AMP nucleosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044209">
        <property type="term" value="P:AMP salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009116">
        <property type="term" value="P:nucleoside metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1730.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1580">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01932">
        <property type="entry name" value="AMP_nucleosidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037109">
        <property type="entry name" value="AMP_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011271">
        <property type="entry name" value="AMP_nucleosidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018953">
        <property type="entry name" value="AMP_nucleoside_Pase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000845">
        <property type="entry name" value="Nucleoside_phosphorylase_d"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035994">
        <property type="entry name" value="Nucleoside_phosphorylase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43691:SF6">
        <property type="entry name" value="PTHR43691:SF6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10423">
        <property type="entry name" value="AMNp_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01048">
        <property type="entry name" value="PNP_UDP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53167">
        <property type="entry name" value="SSF53167"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01717">
        <property type="entry name" value="AMP-nucleosdse"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMNp_N" evidence="3">
        <location>
            <begin position="25"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="domain" description="PNP_UDP_1" evidence="2">
        <location>
            <begin position="276"/>
            <end position="438"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF10423"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH19478.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="493" mass="55117" checksum="77B56DDAC9BBB0AA" modified="2017-03-15" version="1">MNTQKSLEALSPDVPEPEVFTDAAKAVERLKEIYRISAKFLCDNFEDALKTGKAEARYRAFYPEIRFTSTSHTKSDTRLSFGHVAEPGEYSTTVTRPDLFAHYLEQQMTLLMENHDMPVTIGASEIPMPVHFAVANDASVTVPQDGAMEFSLRDCFDVPDLETTHDNIVNGSGYSYPDGSSPLSMFTAQRVDYSLARLSHYTATSAEHFQNHILFTNYQFYVEEFEQYARKMLADKSSGYTSFVSTGNVEITDGDAPLDVPPKLPQMPTYHLKREGGAGITLVNIGVGPSNAKTATDHIAVLRPHAWLMVGHCAGLRNSQQLGDFVLAHAYLREDHVLDDDLPVWVPIPALAEIQIALETAVADVTELKGYDLKRIMRTGTVATIDNRNWELRDHSGPVQRLSQSRAIGLDMESATIAANGFRFRVPYGTLLCVSDKPLHGELKLPGMASDFYKTQVSRHLMIGLRAMEHLREMPLERIHSRKLRSFEETAFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R2K4</accession>
    <name>A0A1M5R2K4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Membrane fusion protein, multidrug efflux system</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2454</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH20250.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2454"/>
    <dbReference type="EnsemblBacteria" id="SHH20250">
        <property type="protein sequence ID" value="SHH20250"/>
        <property type="gene ID" value="SAMN05444003_2454"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032317">
        <property type="entry name" value="HlyD_D23"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006143">
        <property type="entry name" value="RND_pump_MFP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16576">
        <property type="entry name" value="HlyD_D23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01730">
        <property type="entry name" value="RND_mfp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="34"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="domain" description="HlyD_D23" evidence="4">
        <location>
            <begin position="103"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="135"/>
            <end position="193"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF16576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH20250.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="386" mass="41692" checksum="7F4D30DC39C11F98" modified="2017-03-15" version="1">MANKIGFYTVVNTDTNEAKTEPLKFEDDPKSSRSFWIALLLLLGVVGWLVSGFILPAPPPSEESQSLSDRIIEPMAVIAETSIAKPVVQFFKNEGQALPDRDTTLRAQISGQISEVYVKKGEDVEANDVVAKFDTKELEAELERAQAELERAQREVENAIELQERGVATADRVSSAEAALAGARAQLAFAEDNLANTSITAPFAGRIETFELEPGEFIQVGSEIGRLVDNTPLTVAIQVPQISLGVLKNQQPARVKFITGEERAGLVTFVSTSATTATRTFLVEVEVSNSDGKIPAGISAEVEIPYGQVDAHFISPETLSLNEQGALGVKTVDDDNVVRFHDVEVIRATIEGLFVEGLPDEVQIITTGQGFVQDGELVNPQKGADN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RBX9</accession>
    <name>A0A1M5RBX9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Polyribonucleotide nucleotidyltransferase</fullName>
            <ecNumber evidence="7">2.7.7.8</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Polynucleotide phosphorylase</fullName>
            <shortName evidence="7">PNPase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">pnp</name>
        <name evidence="10" type="ORF">SAMN05444003_2503</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>phosphate + RNA(n+1) = a ribonucleoside 5'-diphosphate + RNA(n)</text>
            <dbReference type="Rhea" id="RHEA:22096"/>
            <dbReference type="Rhea" id="RHEA-COMP:14527"/>
            <dbReference type="Rhea" id="RHEA-COMP:17342"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57930"/>
            <dbReference type="ChEBI" id="CHEBI:140395"/>
            <dbReference type="EC" id="2.7.7.8"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the polyribonucleotide nucleotidyltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.8" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2503"/>
    <dbReference type="EnsemblBacteria" id="SHH23867">
        <property type="protein sequence ID" value="SHH23867"/>
        <property type="gene ID" value="SAMN05444003_2503"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004654">
        <property type="term" value="F:polyribonucleotide nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006402">
        <property type="term" value="P:mRNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006396">
        <property type="term" value="P:RNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1370.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.70">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01595">
        <property type="entry name" value="PNPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001247">
        <property type="entry name" value="ExoRNase_PH_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015847">
        <property type="entry name" value="ExoRNase_PH_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036345">
        <property type="entry name" value="ExoRNase_PH_dom2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004087">
        <property type="entry name" value="KH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004088">
        <property type="entry name" value="KH_dom_type_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036612">
        <property type="entry name" value="KH_dom_type_1_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012162">
        <property type="entry name" value="PNPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027408">
        <property type="entry name" value="PNPase/RNase_PH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015848">
        <property type="entry name" value="PNPase_PH_RNA-bd_bac/org-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036456">
        <property type="entry name" value="PNPase_PH_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022967">
        <property type="entry name" value="S1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003029">
        <property type="entry name" value="S1_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11252">
        <property type="entry name" value="PTHR11252"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00013">
        <property type="entry name" value="KH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03726">
        <property type="entry name" value="PNPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01138">
        <property type="entry name" value="RNase_PH"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03725">
        <property type="entry name" value="RNase_PH_C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00575">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005499">
        <property type="entry name" value="PNPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00322">
        <property type="entry name" value="KH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00316">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46915">
        <property type="entry name" value="SSF46915"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54791">
        <property type="entry name" value="SSF54791"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55666">
        <property type="entry name" value="SSF55666"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03591">
        <property type="entry name" value="polynuc_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50126">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 7" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 7 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="S1 motif" evidence="9">
        <location>
            <begin position="691"/>
            <end position="759"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="556"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="562"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01595"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH23867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="777" mass="84990" checksum="1E617ED5B086FE4C" modified="2017-03-15" version="1">MMRIRGRVSRPNSGKTRTPFPTHTFSYKARASECRRPDLSADQRRYRGQGEYALYDNGQPGQKEKHMFNEVKKSIKWGEETLTLETGKVARQADGSVIATMGETSVMANVTFAKKQKPGQDFFPLTVHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDMLAMIAASAALTLSGAPFMGPIAGCRVGFEDGEYILNPEMDDMHNLRMNPEQRLDLVVAGTKDAVMMVESEAYELTEDEMLGAVTFAHEQIQPVIDLIIDLAEDAAKEPFEFEAPDYSELYEVLKAAGEDQMRAAFAITDKQERTAAVAAAREAIMATLSEEQAEDENLGSAMKKLESGVLRGDVVKNGKRIDGRALDTVRPIVSETGILPRTHGSALFTRGETQGLVVTTLGTGDDEQMIDALSGMYKSNFMLHYNFPPYSVGEAGRVGPPGRREIGHGKLAWRALQAVLPAATDFPYTVRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVMEDDGDYAILTDILGDEDHLGDMDFKVAGTAEGITSLQMDIKIAGITPEIMKKALEQAKQGRLHILDEMSKAITTANDLGVHAPKIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGTIKIASSDADAIKKAYDMIHSIVAEPEEGVIYKGKVVKVVDFGAFVNFFGKRDGLVHVSQIENRRLNHPSDVLKEGQEVWVKLLGFDDRGKVRLSMKVVDQETGEEIKKEEAAEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RCY7</accession>
    <name>A0A1M5RCY7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Ribosome-binding factor A</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">rbfA</name>
        <name evidence="3" type="ORF">SAMN05444003_2520</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Monomer. Binds 30S ribosomal subunits, but not 50S ribosomal subunits or 70S ribosomes.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the RbfA family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24207.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901615.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2520"/>
    <dbReference type="EnsemblBacteria" id="SHH24207">
        <property type="protein sequence ID" value="SHH24207"/>
        <property type="gene ID" value="SAMN05444003_2520"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030490">
        <property type="term" value="P:maturation of SSU-rRNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00003">
        <property type="entry name" value="RbfA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000238">
        <property type="entry name" value="RbfA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023799">
        <property type="entry name" value="RbfA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020053">
        <property type="entry name" value="Ribosome-bd_factorA_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33515">
        <property type="entry name" value="PTHR33515"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02033">
        <property type="entry name" value="RBFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89919">
        <property type="entry name" value="SSF89919"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00082">
        <property type="entry name" value="rbfA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01319">
        <property type="entry name" value="RBFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0690">Ribosome biogenesis</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00003"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH24207.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="131" mass="15001" checksum="0CE0DADC0DAE68EA" modified="2017-03-15" version="1">MAKNRNSEGRAPSQRQLRVGELIRRRLSEMLQRGDVNDPDLARMSITVGEVRCSPDLRVATAYVLPLGGGQKEECLAALRNNRHEIRREVSKALSIKFAPEIRFEIDDTFDRMDATTRMLNDPHVRQDLDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RD13</accession>
    <name>A0A1M5RD13_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Dimethlysulfonioproprionate lyase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2519</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24184.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2519"/>
    <dbReference type="EnsemblBacteria" id="SHH24184">
        <property type="protein sequence ID" value="SHH24184"/>
        <property type="gene ID" value="SAMN05444003_2519"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047869">
        <property type="term" value="F:dimethylpropiothetin dethiomethylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031723">
        <property type="entry name" value="DMSP_lyase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16867">
        <property type="entry name" value="DMSP_lyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0456">Lyase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH24184.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="187" mass="20149" checksum="0CE0ED756798237F" modified="2017-03-15" version="1">MISIAIALRDHFAESGIDAVRSIASKWPRSSVVAVAETPATLPVTGWLNDASQGPAINDLRDIASALHWQQTYTATDIGAPFLERYGWTMLVGPDAPIKSDAILAGILILGPDIEYPVHRHSAEEAYVILSGTASWSIGNSDWHQKSAGEVIHNPPWQPHGMCTDCGEPLVLGFLWNAGAVEKSQID</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5REN3</accession>
    <name>A0A1M5REN3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">RNA polymerase sigma-70 factor, ECF subfamily</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2535</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24536.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2535"/>
    <dbReference type="EnsemblBacteria" id="SHH24536">
        <property type="protein sequence ID" value="SHH24536"/>
        <property type="gene ID" value="SAMN05444003_2535"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="2">
        <location>
            <begin position="66"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="3">
        <location>
            <begin position="162"/>
            <end position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH24536.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="218" mass="24838" checksum="786F77E1DF2D1991" modified="2017-03-15" version="1">MLMSSRETDKAGAELVLDRKPHHQGVKRRSVRSETVTDTEANTRLMWVTQIYAVRDTQDKEAFAELFSHFAPRVKSFLMKSGASHDVAEECAQDVMATLWRKAHMFDPAKASVSTWIFTIARNRRIDMLRKQRRPEPEDLPWGPEAEPDQADAMALQEETDQLGQALAQLPEKQRTLIEKAYFGDLSHSEIAAETGLPLGTIKSRIRLALERLRHAMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5REZ3</accession>
    <name>A0A1M5REZ3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2541</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24666.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH24666">
        <property type="protein sequence ID" value="SHH24666"/>
        <property type="gene ID" value="SAMN05444003_2541"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="30"/>
            <end position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH24666.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="59" mass="6745" checksum="FFFFF41E2390AFB7" modified="2017-03-15" version="1">MKNALARLAILSLLVAYGLAFQSERLSQPSVALVVSIFVTYCIGYELYRFWKFLRKNGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RVM5</accession>
    <name>A0A1M5RVM5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">2-keto-myo-inositol dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2716</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901970.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2716"/>
    <dbReference type="EnsemblBacteria" id="SHH30229">
        <property type="protein sequence ID" value="SHH30229"/>
        <property type="gene ID" value="SAMN05444003_2716"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AP_endonuc_2" evidence="1">
        <location>
            <begin position="30"/>
            <end position="278"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH30229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="295" mass="32701" checksum="54018F791EADD3B2" modified="2017-03-15" version="1">MIKIGNAPCSWGVEFADDPRNPAWRKVLQENADAGYKGIELGPVGFMPEDPAILSEALEEFDQELVGGVVFRPFHDPDAWDDVMDGAVRTCKALKAHGAEHLVLIDSISPRRAPTAGRADEAEQLDKAEWTTFRDKIATVAKMGAEEYGLTVGIHAHAAGFMDFEPELERLLDEVDENILKICFDTGHHSYAGFDPVAFMKKHIQRISYMHFKDIDPNVKADVVKNRTDFYEACGQGIFCNLGDGDVDFPAVRQTLLDAGFEGWCTVEQDCDPEGDTSPVDDAKLNRTYLQSIGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RVY7</accession>
    <name>A0A1M5RVY7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">NitT/TauT family transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2703</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH29953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901952.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2703"/>
    <dbReference type="EnsemblBacteria" id="SHH29953">
        <property type="protein sequence ID" value="SHH29953"/>
        <property type="gene ID" value="SAMN05444003_2703"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="7"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="117"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="144"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="230"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="275"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="109"/>
            <end position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH29953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="310" mass="33424" checksum="5F3DF8CDBEFFE99B" modified="2017-03-15" version="1">MRSVFPVLTVLAVIVGLWWAAVAPMNIRPALDIAERSGVAVVPEGSVTRRDVSVWRLMLDNRESIAIGYQLDRPRLPTPSQVGEEFWKTTGEMVAKGRAFSKRSLLYHSWITLRSTFWGFLLGTTFGILGAVAIVYSRVTDMSLMPWAIVSQTIPIVALAPMIIVLSNQVGIDGRGVPKAIISAYLCYFPVLVSMVKGLRSPTASELDLLKTYNASGGQSFWKLRLPASVPYLFAALKVGVAAALVGTIVGELPTGAISGLGARILIGDQFGTPLAIWSALFAAAILAGILVTLIDLIQRAVLPRMGFRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RWZ7</accession>
    <name>A0A1M5RWZ7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">Ribonuclease H</fullName>
            <shortName evidence="5">RNase H</shortName>
            <ecNumber evidence="4 5">3.1.26.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rnhA</name>
        <name evidence="8" type="ORF">SAMN05444003_2737</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>Endonucleolytic cleavage to 5'-phosphomonoester.</text>
            <dbReference type="EC" id="3.1.26.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="5">Binds 1 Mg(2+) ion per subunit. May bind a second metal ion at a regulatory site, or after substrate binding.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3 5">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the RNase H family.</text>
    </comment>
    <dbReference type="EC" id="3.1.26.4" evidence="4 5"/>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30709.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902000.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2737"/>
    <dbReference type="EnsemblBacteria" id="SHH30709">
        <property type="protein sequence ID" value="SHH30709"/>
        <property type="gene ID" value="SAMN05444003_2737"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006401">
        <property type="term" value="P:RNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd09278">
        <property type="entry name" value="RNase_HI_prokaryote_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00042">
        <property type="entry name" value="RNase_H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022892">
        <property type="entry name" value="RNaseHI"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00075">
        <property type="entry name" value="RNase_H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50879">
        <property type="entry name" value="RNASE_H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0540">Nuclease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase H type-1" evidence="7">
        <location>
            <begin position="1"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="127"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="127"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="9"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="52"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="74"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="138"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005300"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH30709.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="151" mass="16667" checksum="4A12A717D12C4526" modified="2017-03-15" version="1">MADLFAYTDGACSGNPGPGGWGALLIAREGDEVVKERELNGGAAETTNNQMELLAAITALETLSSPSRITIVTDSVYVKDGITKWIYGWKSRGWKTAAKKPVKNEELWKRLDEATQKHDVTWEWVKGHAGHPENERADELARQGMEPFKPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S0D4</accession>
    <name>A0A1M5S0D4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">VOC domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2791</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31926.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902080.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2791"/>
    <dbReference type="EnsemblBacteria" id="SHH31926">
        <property type="protein sequence ID" value="SHH31926"/>
        <property type="gene ID" value="SAMN05444003_2791"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004360">
        <property type="entry name" value="Glyas_Fos-R_dOase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00903">
        <property type="entry name" value="Glyoxalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="6"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH31926.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="122" mass="13024" checksum="CFDDDAD763F9C600" modified="2017-03-15" version="1">MTTSPVLVWCEIPVTDLDKSAKFYESVFGYTTVRDDTQVNPMVNLTTDMQAIAGHLYPGTPASDGGNTIHLALSDKLEDGMKRCADAGGEVVSPIITIPPGRFAYAKDIDGNSIGLFEPAMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S4S6</accession>
    <name>A0A1M5S4S6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2859</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33587.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902188.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH33587">
        <property type="protein sequence ID" value="SHH33587"/>
        <property type="gene ID" value="SAMN05444003_2859"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012770670" evidence="1">
        <location>
            <begin position="30"/>
            <end position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH33587.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="190" mass="20088" checksum="726492981A0055ED" modified="2017-03-15" version="1">MKIGFKGISPAAFILSIFAVSTVPTVGLAQDGLSDVCEAETRNGNGWDNAALRPMIEGSWEMAATGTGYTQGTNVETVQIRYDLASRAFVAAGLKLKPLASLPADSPLRRVNIMDTVVDVTKNEDGPGNTVADVALLQGCTDTTQLPIYWWSRTGGGGQAWGMILFMSSEMAVGYMSNSAGGSRTTVMVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SBZ8</accession>
    <name>A0A1M5SBZ8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Carbohydrate ABC transporter membrane protein 2, CUT1 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2886</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH35970.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902264.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2886"/>
    <dbReference type="EnsemblBacteria" id="SHH35970">
        <property type="protein sequence ID" value="SHH35970"/>
        <property type="gene ID" value="SAMN05444003_2886"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="40"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="64"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="97"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="135"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="204"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="240"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="268"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="312"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="372"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="200"/>
            <end position="390"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH35970.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="405" mass="44470" checksum="4BA94CEB02B634FA" modified="2017-03-15" version="1">MSALRFGYITGPLLGALWMFILATTISVGMSLVTGDPFKPYLWLSFFWGALLGYGAVQFPNARTVASGSVAVAFILLGFAGFAPIEVGETTSTFSSAFSWILLGTISAYTTYVIMFDCAVGALTRHEFEAAVIRFLTGLGYIFFTAIVLIPFFVMVMTSLKNQSELIQNPLDFSLDLSKGSDLFRSYIELFTDFNFGIYLWNSFYISVLTVFITLLFAVPGAYAVARLRFNGRAAFSRSILLIYMVPMIVLALPIYIGFSMAGLRNSILGIVMIYPVTTIPVALYMLQGYFRGLPAEVEEAGLMDGLSRLKVIWKITLPLSLPAMASVSLYVFMIAWNEFLLAFMLLDDPSKFTLTRGIASLNSSEIPRQHLMAGSVVATVPIMALFLGLERFMTKGLTAGSVKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SD14</accession>
    <name>A0A1M5SD14_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">GST-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2905</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36406.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902292.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2905"/>
    <dbReference type="EnsemblBacteria" id="SHH36406">
        <property type="protein sequence ID" value="SHH36406"/>
        <property type="gene ID" value="SAMN05444003_2905"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006749">
        <property type="term" value="P:glutathione metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010987">
        <property type="entry name" value="Glutathione-S-Trfase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036282">
        <property type="entry name" value="Glutathione-S-Trfase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004045">
        <property type="entry name" value="Glutathione_S-Trfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004046">
        <property type="entry name" value="GST_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00043">
        <property type="entry name" value="GST_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13417">
        <property type="entry name" value="GST_N_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47616">
        <property type="entry name" value="SSF47616"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50405">
        <property type="entry name" value="GST_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50404">
        <property type="entry name" value="GST_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GST N-terminal" evidence="1">
        <location>
            <begin position="1"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="domain" description="GST C-terminal" evidence="2">
        <location>
            <begin position="85"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH36406.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="209" mass="24083" checksum="CD0E08E350661878" modified="2017-03-15" version="1">MIDLYTWTTPNGRKISIMLEELGVDYTAHAIDIGKDEQFAPEFLKISPNNKIPAIYDHETGQSVMESGAILIYLAEKYGKFFPTDVAGRTKAMEWLMWQMAGFGPMLGQTHHFAKYNPGVSEYAEERFKAESKRLYGVLDKQLEGQDYIVGDYSIVDMACWPWASRYEWQQVDLVKFPNVRAWYQRIAERPAVQRGYHVPMKVNEIPTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SEN9</accession>
    <name>A0A1M5SEN9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2927</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36939.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902328.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2927"/>
    <dbReference type="EnsemblBacteria" id="SHH36939">
        <property type="protein sequence ID" value="SHH36939"/>
        <property type="gene ID" value="SAMN05444003_2927"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007495">
        <property type="entry name" value="NqrM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40691">
        <property type="entry name" value="PTHR40691"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04400">
        <property type="entry name" value="NqrM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH36939.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="80" mass="8656" checksum="A12D62CD7625358A" modified="2017-03-15" version="1">MATFALTFSILLLVMLGMAVGVIFMDKRIKGSCGGLNAIGEGNECLVCNKEIDPDSPLRERLQCPRARKMLERAGLDADA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SIR8</accession>
    <name>A0A1M5SIR8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Phosphopentomutase</fullName>
            <ecNumber evidence="4">5.4.2.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Phosphodeoxyribomutase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">deoB</name>
        <name evidence="6" type="ORF">SAMN05444003_2995</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Phosphotransfer between the C1 and C5 carbon atoms of pentose.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>2-deoxy-alpha-D-ribose 1-phosphate = 2-deoxy-D-ribose 5-phosphate</text>
            <dbReference type="Rhea" id="RHEA:27658"/>
            <dbReference type="ChEBI" id="CHEBI:57259"/>
            <dbReference type="ChEBI" id="CHEBI:62877"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>alpha-D-ribose 1-phosphate = D-ribose 5-phosphate</text>
            <dbReference type="Rhea" id="RHEA:18793"/>
            <dbReference type="ChEBI" id="CHEBI:57720"/>
            <dbReference type="ChEBI" id="CHEBI:78346"/>
            <dbReference type="EC" id="5.4.2.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="4">Binds 1 or 2 manganese ions.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4">Metabolic intermediate biosynthesis; 5-phospho-alpha-D-ribose 1-diphosphate biosynthesis; 5-phospho-alpha-D-ribose 1-diphosphate from D-ribose 5-phosphate (route II): step 1/3.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the phosphopentomutase family.</text>
    </comment>
    <dbReference type="EC" id="5.4.2.7" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38444.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902433.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2995"/>
    <dbReference type="EnsemblBacteria" id="SHH38444">
        <property type="protein sequence ID" value="SHH38444"/>
        <property type="gene ID" value="SAMN05444003_2995"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00087">
        <property type="reaction ID" value="UER00173"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030145">
        <property type="term" value="F:manganese ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008973">
        <property type="term" value="F:phosphopentomutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006015">
        <property type="term" value="P:5-phosphoribose 1-diphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043094">
        <property type="term" value="P:cellular metabolic compound salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009264">
        <property type="term" value="P:deoxyribonucleotide catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd16009">
        <property type="entry name" value="PPM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1250">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00740">
        <property type="entry name" value="Phosphopentomut"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010045">
        <property type="entry name" value="DeoB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006124">
        <property type="entry name" value="Metalloenzyme"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024052">
        <property type="entry name" value="Phosphopentomutase_DeoB_cap_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21110">
        <property type="entry name" value="PTHR21110"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01676">
        <property type="entry name" value="Metalloenzyme"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001491">
        <property type="entry name" value="Ppentomutase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143856">
        <property type="entry name" value="SSF143856"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53649">
        <property type="entry name" value="SSF53649"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01696">
        <property type="entry name" value="deoB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3 4" id="KW-0464">Manganese</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Metalloenzyme" evidence="5">
        <location>
            <begin position="3"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="10"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="310"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="346"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="347"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="358"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010373"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00740"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH38444.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="403" mass="43081" checksum="524E31C927D03DCF" modified="2017-03-15" version="1">MPRAFLVVMDSVGIGGAPDADAFFNDGVPDTGASTLGHIAEACEAGRAEEGRTGPLHLPHMCGLGLAEALALASDRRDLSFSAKVRGAWGAATETSRGKDTPTGHWELAGVPVPWEWHTFPDQKPAFPEEVTRALCEAAGTDGILADCHASGTEIIEREGAEHLRSGWPICYTSADSVLQIAAHEEHFGLDRLLKLCADVAPLLHDMKVGRVIARPFMGDAEAGFTRTQNRKDYAIAPPAPTLLEQVQTAGRHVQAIGKIGDIFSMRGIDAVSKGSDTQLMVDLHDAVETAPEGGLVFANFVEFDSLYGHRRDVSGYARHLEWFDGEIGRVLERLREGDLLIITADHGNDPTWVGTDHTRERVPVIAAGIGARELGQMGFADVAATVAAHLDVAYSGEGRSGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SRH6</accession>
    <name>A0A1M5SRH6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cupin domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3058</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41050.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902587.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3058"/>
    <dbReference type="EnsemblBacteria" id="SHH41050">
        <property type="protein sequence ID" value="SHH41050"/>
        <property type="gene ID" value="SAMN05444003_3058"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013096">
        <property type="entry name" value="Cupin_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07883">
        <property type="entry name" value="Cupin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cupin_2" evidence="1">
        <location>
            <begin position="71"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH41050.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="321" mass="34793" checksum="A88A06645BB12AC4" modified="2017-03-15" version="1">MTPQEIETRIVRYGDLHPCKTAFIDAHTPGSDQKENFTIIGGGVSESSDQHVHISIPHGFNIGAAGQPPKCRNSLHDHHTAEAFFVLKGRWRFFWGRWGDAGEVVLEEGDIFNIPTGIFRGFENIGTDYGMIMAILGGDDAGGGVMWAPQVIEDAADHGLVLGEDGKLYDTKRQQKLPEGVAPMPLMSGEELAKRPEPTTADVLPNHVARYWDLMALSDKEPTTVIGEHGVLRDKPGFEVDFITRGSATEAKNAAKFPTVLMPMRGHWKVTWDGGAATLAPGDTMSVPENLAHSVVPSMTGEASLYRIVATGDPAGLTWQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SRH7</accession>
    <name>A0A1M5SRH7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">SnoaL-like polyketide cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3057</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41027.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902805.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3057"/>
    <dbReference type="EnsemblBacteria" id="SHH41027">
        <property type="protein sequence ID" value="SHH41027"/>
        <property type="gene ID" value="SAMN05444003_3057"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030638">
        <property type="term" value="P:polyketide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009959">
        <property type="entry name" value="Cyclase_SnoaL-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07366">
        <property type="entry name" value="SnoaL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH41027.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="322" mass="35969" checksum="549289EA00D35A29" modified="2017-03-15" version="1">MKGFSNRFTDFPDYIIGITKEIWEDRGIGTLHDYYAPDIPVRSPSSVVKGNQGVIAATMATLAEFPDRTLYGEDVIWSGMPEDGMLSSHRLHSTATHAHDGVYGKATGKTLRYRIIADCHAINNQINDEWLIRDQGAIVRQLGWDPKDYAADLIDREGGPENCVKPFTPEIDIDGPYKGTGNDNKWGQKYAELLTRIMNAEFSVIPQEYDRAVNLEYPGGVSALSHGGADKFWMGLRASFPNAEFKIEHQIGRDDPMMPPRAALRWSLWGKHDGWGSFGTPTGAQVYVMGASHAEFGPWGLRREYTLFDETAIWKQILLATG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SWV9</accession>
    <name>A0A1M5SWV9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">50S ribosomal protein L6</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rplF</name>
        <name evidence="7" type="ORF">SAMN05444003_3169</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 5">This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 4">Belongs to the universal ribosomal protein uL6 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH43034.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3169"/>
    <dbReference type="EnsemblBacteria" id="SHH43034">
        <property type="protein sequence ID" value="SHH43034"/>
        <property type="gene ID" value="SAMN05444003_3169"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.930.12">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01365_B">
        <property type="entry name" value="Ribosomal_L6_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000702">
        <property type="entry name" value="Ribosomal_L6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020040">
        <property type="entry name" value="Ribosomal_L6_a/b-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036789">
        <property type="entry name" value="Ribosomal_L6_a/b-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019906">
        <property type="entry name" value="Ribosomal_L6_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002358">
        <property type="entry name" value="Ribosomal_L6_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11655">
        <property type="entry name" value="PTHR11655"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11655:SF14">
        <property type="entry name" value="PTHR11655:SF14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00347">
        <property type="entry name" value="Ribosomal_L6"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002162">
        <property type="entry name" value="Ribosomal_L6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00059">
        <property type="entry name" value="RIBOSOMALL6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56053">
        <property type="entry name" value="SSF56053"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03654">
        <property type="entry name" value="L6_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00525">
        <property type="entry name" value="RIBOSOMAL_L6_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="1 3 4" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 5" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="Ribosomal_L6" evidence="6">
        <location>
            <begin position="32"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="domain" description="Ribosomal_L6" evidence="6">
        <location>
            <begin position="111"/>
            <end position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003869"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003870"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH43034.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="197" mass="21639" checksum="5A04FDD8447F7421" modified="2017-03-15" version="1">MHVLPTLVVKCSAQYSKGAQMSRIGKRPVDLPSGVTASVSGQTVEVKGPKGTRSFSATDDVTITVEDNAVSVEPRGKSKRARQQWGMSRTQVQNLVTGVTEGFKKELEINGVGYRAQMQGNVLKLSLGYSHEVNFEVPEGVTVTAAKPTEITVEGIDQQLVGQVAANIREWRKPEPYKGKGIKYKDEYIFRKEGKKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T5N7</accession>
    <name>A0A1M5T5N7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">OmpA family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_3253</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3253"/>
    <dbReference type="EnsemblBacteria" id="SHH46059">
        <property type="protein sequence ID" value="SHH46059"/>
        <property type="gene ID" value="SAMN05444003_3253"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07185">
        <property type="entry name" value="OmpA_C-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006664">
        <property type="entry name" value="OMP_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006665">
        <property type="entry name" value="OmpA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036737">
        <property type="entry name" value="OmpA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00691">
        <property type="entry name" value="OmpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01021">
        <property type="entry name" value="OMPADOMAIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103088">
        <property type="entry name" value="SSF103088"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51123">
        <property type="entry name" value="OMPA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009913855" evidence="3">
        <location>
            <begin position="19"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="domain" description="OmpA-like" evidence="4">
        <location>
            <begin position="13"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH46059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="222" mass="24031" checksum="2B49E7ECC394A052" modified="2017-03-15" version="1">MRLLLTLFALLFPVFVAAQDLGTVNFDFDSDVLDAEARAEIAEIAEDLKASPTYKPTVVVGYTDAVGSSGYNQDLGLRRARAVARELVAQGVPVERIGTVESRGENELLVSVSAPLRANRRATVTLDDMLAACRSYRDIAINSASVGDQLQNDLRARLAEAVTAYAFYEANGRNGPAFQMAGAAREDCGIAIGYVNDSLRKVEYAQRCICNSTRLRTAMSGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T6C2</accession>
    <name>A0A1M5T6C2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">2-keto-3-deoxy-L-fuconate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3263</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46301.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902936.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3263"/>
    <dbReference type="EnsemblBacteria" id="SHH46301">
        <property type="protein sequence ID" value="SHH46301"/>
        <property type="gene ID" value="SAMN05444003_3263"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH46301.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="250" mass="25969" checksum="26DEE180EE7DC9E9" modified="2017-03-15" version="1">MGPLAGKRAVVTAAGQGIGAAIARRFSEDGAEVFASDLDPVLMSDLNAQRTDKLDVTDDAAVEAYAAKVGDVDVLCNVAGFVHNGTVLDATNEDWDFSFNLNVKSMHRMIRAFLPGMLARGTADIGGSIINMSSGASSIKGAPSRYIYGATKAAVIGLTKAVAADFAGQKLRCNAICPGTVDSPSWRDRVEAIADEVGGVDAAEAQFVARQPMGRVASADEIAAMAVYLASDESAFVTGAEFKIDGGWTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T738</accession>
    <name>A0A1M5T738_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Urease subunit alpha</fullName>
            <ecNumber evidence="5">3.5.1.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Urea amidohydrolase subunit alpha</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">ureC</name>
        <name evidence="13" type="ORF">SAMN05444003_3273</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="5 10">
            <text>2 H(+) + H2O + urea = CO2 + 2 NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:20557"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16199"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="EC" id="3.5.1.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5 7 10">
            <name>Ni cation</name>
            <dbReference type="ChEBI" id="CHEBI:25516"/>
        </cofactor>
        <text evidence="5 7 10">Binds 2 nickel ions per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 5">Nitrogen metabolism; urea degradation; CO(2) and NH(3) from urea (urease route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Heterotrimer of UreA (gamma), UreB (beta) and UreC (alpha) subunits. Three heterotrimers associate to form the active enzyme.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5 9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="PTM">
        <text evidence="6">Carbamylation allows a single lysine to coordinate two nickel ions.</text>
    </comment>
    <comment type="PTM">
        <text evidence="5">Carboxylation allows a single lysine to coordinate two nickel ions.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 11">Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.5" evidence="5"/>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46539.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902952.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3273"/>
    <dbReference type="EnsemblBacteria" id="SHH46539">
        <property type="protein sequence ID" value="SHH46539"/>
        <property type="gene ID" value="SAMN05444003_3273"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00258">
        <property type="reaction ID" value="UER00370"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016151">
        <property type="term" value="F:nickel cation binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009039">
        <property type="term" value="F:urease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043419">
        <property type="term" value="P:urea catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00375">
        <property type="entry name" value="Urease_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01953">
        <property type="entry name" value="Urease_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011059">
        <property type="entry name" value="Metal-dep_hydrolase_composite"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011612">
        <property type="entry name" value="Urease_alpha_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017950">
        <property type="entry name" value="Urease_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005848">
        <property type="entry name" value="Urease_asu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017951">
        <property type="entry name" value="Urease_asu_c"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029754">
        <property type="entry name" value="Urease_Ni-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01979">
        <property type="entry name" value="Amidohydro_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00449">
        <property type="entry name" value="Urease_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01752">
        <property type="entry name" value="UREASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51338">
        <property type="entry name" value="SSF51338"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01792">
        <property type="entry name" value="urease_alph"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01120">
        <property type="entry name" value="UREASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00145">
        <property type="entry name" value="UREASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51368">
        <property type="entry name" value="UREASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 5 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 5 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 5 7" id="KW-0533">Nickel</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Urease" evidence="12">
        <location>
            <begin position="148"/>
            <end position="586"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="5 8 9">
        <location>
            <position position="339"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5 7">
        <location>
            <position position="153"/>
        </location>
        <ligand>
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 7">
        <location>
            <position position="155"/>
        </location>
        <ligand>
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" description="via carbamate group" evidence="5 7">
        <location>
            <position position="236"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5 9">
        <location>
            <position position="238"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 7">
        <location>
            <position position="265"/>
        </location>
        <ligand>
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 7">
        <location>
            <position position="291"/>
        </location>
        <ligand>
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 7">
        <location>
            <position position="379"/>
        </location>
        <ligand>
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-carboxylysine" evidence="5 6">
        <location>
            <position position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004897"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022596"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR611612-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR611612-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR611612-52"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00700"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU000510"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU004158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHH46539.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="586" mass="62404" checksum="CDE723AAFC34275A" modified="2017-03-15" version="1">MPATISRSDYAAMYGPTVGDKLRLADTDLLIEVERDLIAERSAQAATEVSVANTLQYGEEVKFGGGKVIRDGMGQSQITHTAGAVDTVITNALIVDHTGIYKADIGLKDGRILKIGKAGNPDTQPGVDIIVGPGTEAIAGEGRIVTAGGFDSHIHYICPQQIEDALHSGLTTMLGGGTGPAHGTLATTCTPGPWHIGQMLQSADAFPMNLAFAGKGNASLPAALEEQVNAGACALKLHEDWGTTPAAIDCCLSVADAMDVQVMIHTDTLNESGFVENTVAAMKGRTIHAFHTEGAGGGHAPDIIKICGEDHVLPSSTNPTRPFTVNTVEEHLDMLMVCHHLDKSIPEDVAFAESRIRRETIAAEDILHDMGAFSIIASDSQAMGRVGEVIIRTWQTADKMKKQRGRLADEAGDNDNLRVRRYVAKYTINPAIAHGISTEIGSIEEGKRADLVLWSPAFFGVKPEMVLIGGSIVCAQMGDPNASIPTPQPVYSRPMFGAYGRAVENSAVVFVSEAAYANGIGDRLGLAKSTLPVKNTRNIGKKDLKLNDATPEVEVNPETYEVRADGELLTCQPATELPMAQRYFLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T850</accession>
    <name>A0A1M5T850_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">TRAP transporter, DctM subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_3283</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46780.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902967.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3283"/>
    <dbReference type="EnsemblBacteria" id="SHH46780">
        <property type="protein sequence ID" value="SHH46780"/>
        <property type="gene ID" value="SAMN05444003_3283"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010656">
        <property type="entry name" value="DctM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004681">
        <property type="entry name" value="TRAP_DctM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33362">
        <property type="entry name" value="PTHR33362"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06808">
        <property type="entry name" value="DctM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="6"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="74"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="112"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="154"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="193"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="236"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="267"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="295"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="328"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="357"/>
            <end position="375"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="395"/>
            <end position="425"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="437"/>
            <end position="462"/>
        </location>
    </feature>
    <feature type="domain" description="DctM" evidence="4">
        <location>
            <begin position="13"/>
            <end position="457"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF06808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH46780.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="466" mass="49408" checksum="4C45C5DB54C5FA8C" modified="2017-03-15" version="1">MDSIEIGLWVTGGLLVLVVLGMRVAFAAALSGLIGLIWIFWSRKGYAGDEFGWALSVAVKTAGQVPHSKVSSQALSLIPTFILIGYLAYYAGLTKALFEAAKRWIAWVPGGLAVSTVFATAGFAAVSGASVATSAVFARIAIPEMLKIGYNKQFAAGVVAAGGTLASLIPPSAILVIYAIIVEQDVGKLLLAGFVPGAFSALIYGLLIIGLALTVKNFGPPVSGFTWREKFESLPPALPIIFVVVTIICFVYNPFGEKAWGTPTEGGAIGAFVVFLMALYKGMRWEQLKNALLETAKLSVMIFSIIWGVLLYVRFLGFADLPGAFSDWITGLDMAPMLILICILLAYAVLGMFMDAIGMLLLTLPVVYPAVMALNGGEFVSAAESTFGMSGPMCAIWFGILVVKMAEFCLITPPIGLNCFVVAGVRDDLTVQDVFKGVTPFFIADAITIGLLVAFPAIVLWLPSLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TA70</accession>
    <name>A0A1M5TA70_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">TRAP transporter, DctM subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_3301</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000009">
        <property type="protein sequence ID" value="SHH47667.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072903012.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000009.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3301"/>
    <dbReference type="EnsemblBacteria" id="SHH47667">
        <property type="protein sequence ID" value="SHH47667"/>
        <property type="gene ID" value="SAMN05444003_3301"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010656">
        <property type="entry name" value="DctM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004681">
        <property type="entry name" value="TRAP_DctM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33362">
        <property type="entry name" value="PTHR33362"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06808">
        <property type="entry name" value="DctM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006066">
        <property type="entry name" value="HI0050"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00786">
        <property type="entry name" value="dctM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="12"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="56"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="96"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="137"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="173"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="215"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="243"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="274"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="316"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="358"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="399"/>
            <end position="423"/>
        </location>
    </feature>
    <feature type="domain" description="DctM" evidence="4">
        <location>
            <begin position="10"/>
            <end position="418"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF06808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH47667.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="431" mass="45433" checksum="C302DD610CD72D27" modified="2017-03-15" version="1">MSLELTLGMITLFGMAAIGTPVAYAILVGVLVYLGVSGQDLAIAGTTMVQRLFDGFLLLAVPLFITSANIMNAGTISDRLLQFCIALVGRFRGGMGHVNVVASLIFSGMSGSAVADAAGIGKIIIDMMVKSGRYTRGYAAAITAATATIGPIIPPSIPMVLYALVSNASVGDLFLAGIVPGLVMGVVLMGMNSFISHKRGFGQEEPVPLREIPRLTVRATPALLMPVILLGCIYSGVTTPTEAAAIAALYALIVAAGLYRAIKIKTLYEIFVESARSAASVGLVIGASMILTYIVIQENVPQSISAMFAGADISPLMFMLMVNILVLLLGCILDATVIILVIIPLFIPTCRELGIDLVHFGVLIVVNSMIGLITPPYGILLFVINAVTGIPLKEIIREIWAFLGILIAALVVMILVPDIVLWLPRLFGYQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TDU5</accession>
    <name>A0A1M5TDU5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposase InsO and inactivated derivatives</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3333</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
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            <taxon>Rhodobacteraceae</taxon>
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        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000016">
        <property type="protein sequence ID" value="SHH48957.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH48957">
        <property type="protein sequence ID" value="SHH48957"/>
        <property type="gene ID" value="SAMN05444003_3333"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025948">
        <property type="entry name" value="HTH-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13276">
        <property type="entry name" value="HTH_21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="1">
        <location>
            <begin position="75"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH48957.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="209" mass="24412" checksum="A26E6E1F6C7FB006" modified="2017-03-15" version="1" fragment="single">MPVGRADEERLVADMIELTRQYGRYGYRRIAALLRDAGWLVNDQRVERLWRREGLKVPMKQPKKGRLWTNDGSCIRLRPEYRDHVWSYDFVHHRTDDGKAFQTLNILDEHSRECLAIWVKRKLNSTEVIDALTDLFILRGVPDFIRSDNGPEFIAQAVRDWIAAVGAKTAYIEPGSPWENGYCESFNARLRDELLNGEVFYSLREAQIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-09-29" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L0U2</accession>
    <name>A0A1M5L0U2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0036</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
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        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58704.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898365.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG58704">
        <property type="protein sequence ID" value="SHG58704"/>
        <property type="gene ID" value="SAMN05444003_0036"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
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    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
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        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013382133" evidence="2">
        <location>
            <begin position="17"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="97"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG58704.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="178" mass="19491" checksum="F37E7491A4D0A002" modified="2017-03-15" version="1">MRLIIAALFAASAASAESCPPAPNHTDAIQNLVSQYKSSSQLEARSLTGQLWALWTDAPDQKAQALLDEGMRLISTFDFDGSKAVLDELVAYCPDYAEGYNQRAFAQFLAKDYDGALADLDRTLEIIPNHIGAISGRGMTLIGMGRRPEGEDAIRDALELNPWLSERRFLTEPEGTDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L1Y9</accession>
    <name>A0A1M5L1Y9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative DNA-binding domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0057</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59132.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898394.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0057"/>
    <dbReference type="EnsemblBacteria" id="SHG59132">
        <property type="protein sequence ID" value="SHG59132"/>
        <property type="gene ID" value="SAMN05444003_0057"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
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        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.690">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018640">
        <property type="entry name" value="DUF2063"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044922">
        <property type="entry name" value="DUF2063_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09836">
        <property type="entry name" value="DUF2063"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF2063" evidence="1">
        <location>
            <begin position="4"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09836"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG59132.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="246" mass="26736" checksum="AB74FB3267D8944F" modified="2017-03-15" version="1">MIVTQTAFRKGLLDPALPAPEGLQNPDGAQATKRFDVYRNNVAVSLSDALESAFPVVRKLVGDEFFRAMAGVYLRKFPPSSPLMMHYGEHLPQFLTRFEPTKNHRYLPDIARVELAIRKSYHAADAEPIDGQALAAVAPEDLMALQMTIAPAVQVVSSKDYPIHAIYMANTREDAPKPEPGAESVLIARPHFDPTIHKISTADASCIKALQEGKSLGLALAEAGDDLDLGATLGLLLSQRAIIELN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L353</accession>
    <name>A0A1M5L353_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Polyhydroxyalkanoate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0070</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898407.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0070"/>
    <dbReference type="EnsemblBacteria" id="SHG59375">
        <property type="protein sequence ID" value="SHG59375"/>
        <property type="gene ID" value="SAMN05444003_0070"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042619">
        <property type="term" value="P:poly-hydroxybutyrate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010963">
        <property type="entry name" value="PHA_synth_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010941">
        <property type="entry name" value="PhaC_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07167">
        <property type="entry name" value="PhaC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01838">
        <property type="entry name" value="PHA_synth_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="5" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PhaC_N" evidence="6">
        <location>
            <begin position="109"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="5">
        <location>
            <begin position="9"/>
            <end position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF07167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG59375.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="598" mass="66610" checksum="F2B022D99E6F1DFE" modified="2017-03-15" version="1">MTTEDISESATSGKNIDKLEANLARAEELTQRLLNVMGKGRAVPAALQGPAPDLYAKAVGAYWAEMAQNPAKILEHQLEYWSKSVKHYVEAQHLMMQGKFEAPSDETPKDRRFSHEMWETNPYFNFIKQQYLMSSAAIQQAVDDIDDMEAGEKARVEYFSQQIIDMLSPTNFLPTNPEALELAAETDGESLVKGLENLINDLEANDGDLVVTLADKKAFTLGENLATTEGSVVYRNRMFELIQYKPTTEQVHETPLVIFPPWINKFYVMDLKPQNSLIKWIVDQGFTLFVVSWVNPDETYKDVGMTEYVEEGYLTAIDQVKSICDVKKVNAVGYCIAGTTLSITLALMKQRKDSSVNSATFFTTLTDFSDRGEVGVFLDNDFVDGIEAEVTESGYLDHFYMSRTFSFLRSNDLIYGPAIKSYMMGKAPPAFDLLYWNGDGTNLPAKMSVEYLRGLCQNDRLATDGFEVAGTTVSLKDVTIPMCAIACETDHIAAWKSSYRGVQGMGSKDKTFILSESGHIAGIINPPSKKKYGHYTNPEMGLTPDDWLSDADKHEGSWWPRWGAWLAKKSGKKVPAREIGSAGYEVLASAPGTYVVGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LA01</accession>
    <name>A0A1M5LA01_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 12">D-alanine--D-alanine ligase</fullName>
            <ecNumber evidence="5 12">6.3.2.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="12">D-Ala-D-Ala ligase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="12">D-alanylalanine synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="primary">ddl</name>
        <name evidence="16" type="ORF">SAMN05444003_0181</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 12">Cell wall formation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 12">
            <text>ATP + 2 D-alanine = ADP + D-alanyl-D-alanine + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:11224"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57416"/>
            <dbReference type="ChEBI" id="CHEBI:57822"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="13">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="13">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="13">Binds 2 magnesium or manganese ions per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="12">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="12">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 12">Belongs to the D-alanine--D-alanine ligase family.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.4" evidence="5 12"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61790.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898548.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0181"/>
    <dbReference type="EnsemblBacteria" id="SHG61790">
        <property type="protein sequence ID" value="SHG61790"/>
        <property type="gene ID" value="SAMN05444003_0181"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008716">
        <property type="term" value="F:D-alanine-D-alanine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00047">
        <property type="entry name" value="Dala_Dala_lig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000291">
        <property type="entry name" value="D-Ala_lig_Van_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005905">
        <property type="entry name" value="D_ala_D_ala"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011095">
        <property type="entry name" value="Dala_Dala_lig_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011127">
        <property type="entry name" value="Dala_Dala_lig_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07478">
        <property type="entry name" value="Dala_Dala_lig_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01820">
        <property type="entry name" value="Dala_Dala_lig_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF039102">
        <property type="entry name" value="Ddl/VanB"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01205">
        <property type="entry name" value="D_ala_D_alaTIGR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00843">
        <property type="entry name" value="DALA_DALA_LIGASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00844">
        <property type="entry name" value="DALA_DALA_LIGASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 14" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9 12" id="KW-0133">Cell shape</keyword>
    <keyword evidence="11 12" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="12" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 12 16" id="KW-0436">Ligase</keyword>
    <keyword evidence="13" id="KW-0460">Magnesium</keyword>
    <keyword evidence="13" id="KW-0464">Manganese</keyword>
    <keyword evidence="13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7 14" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10 12" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-grasp" evidence="15">
        <location>
            <begin position="105"/>
            <end position="298"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00003921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010871"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012216"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRSR" id="PIRSR039102-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="SHG61790.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="304" mass="32708" checksum="37850124F50432F9" modified="2017-03-15" version="1">MSSRADPSVVVLMGGPSAEREVSLSSGRECATALRASGCEVVEVDAGPDLAARLIEISPDAVFNALHGRWGEDGCVQGMLEWLRIPYTHSGVVASAVAMDKQRTKDVYRAAGLPFVDSIIAKSSDVSAAHVMEPPYVVKPYNEGSSVGVYIVGESPNGPPQLANDMPVEVMVETYAPGRELTTTVLGDRPLTVTDIITDGWYDYHAKYAEGGSRHELPADVPTEIFDACMDFAVKAHKALGCRGLSRTDYRWDETRGIDGLILLETNTQPGMTPTSLAPEQAENCGISFPDLCRQLVEDASCDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LAY1</accession>
    <name>A0A1M5LAY1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">BolA protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0197</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the BolA/IbaG family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62181.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898573.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0197"/>
    <dbReference type="EnsemblBacteria" id="SHG62181">
        <property type="protein sequence ID" value="SHG62181"/>
        <property type="gene ID" value="SAMN05444003_0197"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002634">
        <property type="entry name" value="BolA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036065">
        <property type="entry name" value="BolA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01722">
        <property type="entry name" value="BolA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003113">
        <property type="entry name" value="BolA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82657">
        <property type="entry name" value="SSF82657"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU003860"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG62181.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="87" mass="9459" checksum="F18404D81758BBC7" modified="2017-03-15" version="1">MSLEQQISEALKQSFAPSHLDVINESHLHAGHDGDDGSGESHWKVVIVSDQFSGLTRIAKHRAVHAALGKDILNRIHALSLDIQSDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LC87</accession>
    <name>A0A1M5LC87_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Leucyl/phenylalanyl-tRNA--protein transferase</fullName>
            <ecNumber evidence="4">2.3.2.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">L/F-transferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Leucyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Phenyalanyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">aat</name>
        <name evidence="5" type="ORF">SAMN05444003_0218</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>L-leucyl-tRNA(Leu) + N-terminal L-arginyl-[protein] = H(+) + N-terminal L-leucyl-L-arginyl-[protein] + tRNA(Leu)</text>
            <dbReference type="Rhea" id="RHEA:50416"/>
            <dbReference type="Rhea" id="RHEA-COMP:9613"/>
            <dbReference type="Rhea" id="RHEA-COMP:9622"/>
            <dbReference type="Rhea" id="RHEA-COMP:12672"/>
            <dbReference type="Rhea" id="RHEA-COMP:12673"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:64719"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78494"/>
            <dbReference type="ChEBI" id="CHEBI:133044"/>
            <dbReference type="EC" id="2.3.2.6"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>L-leucyl-tRNA(Leu) + N-terminal L-lysyl-[protein] = H(+) + N-terminal L-leucyl-L-lysyl-[protein] + tRNA(Leu)</text>
            <dbReference type="Rhea" id="RHEA:12340"/>
            <dbReference type="Rhea" id="RHEA-COMP:9613"/>
            <dbReference type="Rhea" id="RHEA-COMP:9622"/>
            <dbReference type="Rhea" id="RHEA-COMP:12670"/>
            <dbReference type="Rhea" id="RHEA-COMP:12671"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:65249"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78494"/>
            <dbReference type="ChEBI" id="CHEBI:133043"/>
            <dbReference type="EC" id="2.3.2.6"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>an N-terminal L-alpha-aminoacyl-[protein] + L-phenylalanyl-tRNA(Phe) = an N-terminal L-phenylalanyl-L-alpha-aminoacyl-[protein] + tRNA(Phe)</text>
            <dbReference type="Rhea" id="RHEA:43632"/>
            <dbReference type="Rhea" id="RHEA-COMP:9668"/>
            <dbReference type="Rhea" id="RHEA-COMP:9699"/>
            <dbReference type="Rhea" id="RHEA-COMP:10636"/>
            <dbReference type="Rhea" id="RHEA-COMP:10637"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78531"/>
            <dbReference type="ChEBI" id="CHEBI:78597"/>
            <dbReference type="ChEBI" id="CHEBI:83561"/>
            <dbReference type="EC" id="2.3.2.6"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the L/F-transferase family.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.6" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62712.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898610.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0218"/>
    <dbReference type="EnsemblBacteria" id="SHG62712">
        <property type="protein sequence ID" value="SHG62712"/>
        <property type="gene ID" value="SAMN05444003_0218"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008914">
        <property type="term" value="F:leucyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030163">
        <property type="term" value="P:protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.630.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00688">
        <property type="entry name" value="Leu_Phe_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004616">
        <property type="entry name" value="Leu/Phe-tRNA_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042203">
        <property type="entry name" value="Leu/Phe-tRNA_Trfase_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30098">
        <property type="entry name" value="PTHR30098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03588">
        <property type="entry name" value="Leu_Phe_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00667">
        <property type="entry name" value="aat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="1 4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4 5" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00688"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG62712.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="216" mass="24088" checksum="749AB865F1357F1E" modified="2017-03-15" version="1">MRDEDPPLTPQLLLQAYRVGVFPMSESRDDPSVFWVDPRMRGVFPLDGFHASRSLQKTLRKGHFSATANMAFRDVVAGCADRSETWINDTIFDLYLQLHQMGHAHSVEIWDDEELVGGVYGVTLGAAFFGESMFSTATNASKAALFFLIDRLITQGYRLFDTQFITPHLSSLGAIEITRADYHLQLDMAVEQIATFGPAGPLSSAQDVLQRRAQIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LCS1</accession>
    <name>A0A1M5LCS1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Amino acid/amide ABC transporter substrate-binding protein, HAAT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0225</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898629.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0225"/>
    <dbReference type="EnsemblBacteria" id="SHG62902">
        <property type="protein sequence ID" value="SHG62902"/>
        <property type="gene ID" value="SAMN05444003_0225"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028081">
        <property type="entry name" value="Leu-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13458">
        <property type="entry name" value="Peripla_BP_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peripla_BP_6" evidence="2">
        <location>
            <begin position="44"/>
            <end position="406"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="430"/>
            <end position="450"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG62902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="450" mass="47683" checksum="77B3CCF8FC946D32" modified="2017-03-15" version="1">MSNNNVTRRGVLKSGTIAGAGLAVPTIFTASAARAYTNEPGAGSVKIGFNVPQTGPYAEEGLDELRAQELAVEHLNGMGDGGMLNTFSEKNLDGTGILGRKVEFVTGDTQTKSDVARASAQQMIEREGVIMVNGGSSSGVAVAVQALCQEAGIIFMAGLTHSNDTTGKDRKANGFRHFFNSYMSGAALAPVLKNAYGDQRRAYHLTADYNWGYTTQEAVQTSTEAMGWETVETVLTPVGAGDFNSYITPVLNSGADVLVLNHYGGDMVNSLTQAIQAGIRDRVVDGTQMEIVVPLYSELMAAGAGQNIQGILGSMNWNWQLEDAGTAAFTKSFGEKYGRPPSNAAHTCYVQTLLYADAVTRAGTFDPCGVAEALEDFEFDGMGNGPTTYRGADHQCFKDVLVVKGKENPSNQYDTLEIVEVTPRAQVEYAPDHPSFGGADATLGECNSGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LD13</accession>
    <name>A0A1M5LD13_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Bleomycin resistance protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0213</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bleomycin resistance protein family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898600.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG62579">
        <property type="protein sequence ID" value="SHG62579"/>
        <property type="gene ID" value="SAMN05444003_0213"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046677">
        <property type="term" value="P:response to antibiotic"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd08349">
        <property type="entry name" value="BLMA_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000335">
        <property type="entry name" value="Bleomycin-R"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19581">
        <property type="entry name" value="Glyoxalase_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="3">
        <location>
            <begin position="2"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011051"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021572"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG62579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="122" mass="14348" checksum="D350F9FE44B371D9" modified="2017-03-15" version="1">MRLGRATPILRMFDEGKAREFYVDWLQFKVQFEHRFGANMPLYLGLVRDDLELHLSEHHGDTTPGTRVRLAVDGIHAFYDDIASRRYAFLRPGAPQKQEWGEWDLTLTDPFGNKLTFYENMQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LF45</accession>
    <name>A0A1M5LF45_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Protein ImuA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0254</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63575.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0254"/>
    <dbReference type="EnsemblBacteria" id="SHG63575">
        <property type="protein sequence ID" value="SHG63575"/>
        <property type="gene ID" value="SAMN05444003_0254"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG63575.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="224" mass="24713" checksum="DF5DB16E8DA83DA2" modified="2017-03-15" version="1">MQHLPPLTTKGENTPQMVLRNRNHKQEAPEATFAEVFADTVVDAAATGFICAQLAAAGKPILWIQDRLSRREAGKPYLAGLSAPLKVISVTVSKPADVLWSMEEGLRCTGLSAVLGEIWGDPPCLDFTASKRLALRAEARDLPAWLIRRAATPNLSAARMRWRISSLPSETNRYDMRAPGHPLWRAELFRARWRPPGEWVARQSATGLTLSHGLNDAPSHQHTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LLA4</accession>
    <name>A0A1M5LLA4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Penicillin-binding protein 1A</fullName>
            <ecNumber evidence="7">2.4.1.129</ecNumber>
            <ecNumber evidence="6">3.4.16.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="20" type="ORF">SAMN05444003_0342</name>
    </gene>
    <organism evidence="20 21">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="20 21" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20 21">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="16">
            <text>[GlcNAc-(1-&gt;4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)](n)-di-trans,octa-cis-undecaprenyl diphosphate + beta-D-GlcNAc-(1-&gt;4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)-di-trans,octa-cis-undecaprenyl diphosphate = [GlcNAc-(1-&gt;4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)](n+1)-di-trans-octa-cis-undecaprenyl diphosphate + di-trans,octa-cis-undecaprenyl diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:23708"/>
            <dbReference type="Rhea" id="RHEA-COMP:9602"/>
            <dbReference type="Rhea" id="RHEA-COMP:9603"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:58405"/>
            <dbReference type="ChEBI" id="CHEBI:60033"/>
            <dbReference type="ChEBI" id="CHEBI:78435"/>
            <dbReference type="EC" id="2.4.1.129"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Single-pass type II membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">In the C-terminal section; belongs to the transpeptidase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">In the N-terminal section; belongs to the glycosyltransferase 51 family.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.129" evidence="7"/>
    <dbReference type="EC" id="3.4.16.4" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65459.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0342"/>
    <dbReference type="EnsemblBacteria" id="SHG65459">
        <property type="protein sequence ID" value="SHG65459"/>
        <property type="gene ID" value="SAMN05444003_0342"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008658">
        <property type="term" value="F:penicillin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008955">
        <property type="term" value="F:peptidoglycan glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009002">
        <property type="term" value="F:serine-type D-Ala-D-Ala carboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046677">
        <property type="term" value="P:response to antibiotic"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3810.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001264">
        <property type="entry name" value="Glyco_trans_51"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023346">
        <property type="entry name" value="Lysozyme-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036950">
        <property type="entry name" value="PBP_transglycosylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031376">
        <property type="entry name" value="PCB_OB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001460">
        <property type="entry name" value="PCN-bd_Tpept"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17092">
        <property type="entry name" value="PCB_OB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00912">
        <property type="entry name" value="Transgly"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00905">
        <property type="entry name" value="Transpeptidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53955">
        <property type="entry name" value="SSF53955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="14" id="KW-0046">Antibiotic resistance</keyword>
    <keyword evidence="9" id="KW-0121">Carboxypeptidase</keyword>
    <keyword evidence="11" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="12" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="15" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="10" id="KW-0645">Protease</keyword>
    <keyword evidence="21" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="13" id="KW-0735">Signal-anchor</keyword>
    <keyword evidence="11" id="KW-0808">Transferase</keyword>
    <keyword evidence="13" id="KW-0812">Transmembrane</keyword>
    <feature type="domain" description="Transgly" evidence="18">
        <location>
            <begin position="46"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="domain" description="PCB_OB" evidence="19">
        <location>
            <begin position="318"/>
            <end position="424"/>
        </location>
    </feature>
    <feature type="domain" description="Transpeptidase" evidence="17">
        <location>
            <begin position="426"/>
            <end position="712"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004249"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00007739"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00012555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00018638"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00023988"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="Pfam" id="PF00905"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="Pfam" id="PF00912"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="19">
        <source>
            <dbReference type="Pfam" id="PF17092"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="EMBL" id="SHG65459.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="820" mass="89792" checksum="922B87E1C4AA2227" modified="2017-03-15" version="1">MLTLGIAMMALVVGAVFYMYGRDLPSYEVLSQYTPKTISRIYNQEGQIIDEYAVERRLFTPAEEIPDIVKQAFISAEDKNFYTHAGFDPRGIAAAAYEAVATRGDTVRGASTITQQVMKNFLLDGGRTAERKIKEIILAARIDGAMSKEQILELYLNEIDLGVRSFGVTAAALSYFNKPLDELTPAEAAFLAVHPKAPYSYHPVDDREAALDRRNNLVLREMFENGYLTEEEYETALADPLRTVQNGDFPSFQSERPDRDYFSSEVRRQLTRQFGEDDVDFSASGYSIRATVDPDLQQQAALSLQTALERYDRGVGAWRGTGENIAAEALATEESWREALANTDVARDIELGGRWYPAVVLGVEDQQLRLGIEDIASDDVRGNVVPRSDTSWFSGNLFDNFEVGDVIHVSKLDEGWTLRQVPEVQGGFMAMDVNTGRVLAMQGGFSFQHSSFNRATQARRQPGSSFKPFVYAAALDSGYSPATIVVDAPIEINTPQGVWRPQNASNQFYGPTPLRTGIEQSRNLMTVRLAQEVGMDVIASYAEQFGVYDRMNQVLATSLGSDETTLYQMVASYAMFANGGERVEPTLVDRVQDRYGNTIFRHDQRTCWDCDAPLAEGQAPRITSNRERVMNEVTAFQLTSMMQGVVQRGTASGAINLPVPIAGKTGTTNDAKDVWFVGFSSNIVAGCYIGFDTPRSLGRGASGGGICGPVFQSFMSEAIETYGGGAFRAPEGCQFISIDRFTGARLPDGTQGENVVAECFRPGEEPIFGIMFDGGFAMGADLPLFDEVASQARQVTTSTGETATVGPKASFGSLSSGGLY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LNM3</accession>
    <name>A0A1M5LNM3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Anthranilate synthase, component II</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0378</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66259.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898850.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0378"/>
    <dbReference type="EnsemblBacteria" id="SHG66259">
        <property type="protein sequence ID" value="SHG66259"/>
        <property type="gene ID" value="SAMN05444003_0378"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071704">
        <property type="term" value="P:organic substance metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd01743">
        <property type="entry name" value="GATase1_Anthranilate_Synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017926">
        <property type="entry name" value="GATASE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006221">
        <property type="entry name" value="TrpG/PapA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00117">
        <property type="entry name" value="GATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00566">
        <property type="entry name" value="trpG_papA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GATase" evidence="1">
        <location>
            <begin position="3"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG66259.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="193" mass="20924" checksum="DDDE17462038B600" modified="2017-03-15" version="1">MLLLIDNYDSFTYNLVHYLGELGADVVVHRNDALNVQEAMGLKPEMIMLSPGPCDPAQAGICLALTEAAAETRTPLMGVCLGHQTIGEVFGGKVVRCHEIVHGKMGTMKNDGKGLFKGLPASFEATRYHSLVVERETFPDALEITAELEDGTIMGLQHKTLPIHGVQFHPESIASEHGHALLQNFLDLAKVPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LPL9</accession>
    <name>A0A1M5LPL9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0380</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66303.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0380"/>
    <dbReference type="EnsemblBacteria" id="SHG66303">
        <property type="protein sequence ID" value="SHG66303"/>
        <property type="gene ID" value="SAMN05444003_0380"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="47"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="71"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="98"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="127"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="157"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="187"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="219"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="250"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="275"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="12"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="157"/>
            <end position="290"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG66303.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="300" mass="31398" checksum="D2771B458C61E769" modified="2017-03-15" version="1">MSSPPQLTLPSLLMLLALAAVWGGSFFFAEIALTELSPMTVTLHRVLWALPMLFVVVKFAGVPIPTDPKVWGAYLVMGALNNAIPFTLIFWGQTQIDSGLASILNGMTAISGAVIAGLLLKDEPLTAPKIFGALFGVAGVAVIVGPDALQSLSLANIGQFAILLAGVSYSLASVWGRTKLGRQPPLVNALGMIAGSTVLMVPLVFLVDGVPKFEMSATVFAAMLGLVMLSTVLAYLLYFAVLVRAGAANLMLVTLLIPPFAIALGVLFLGEVMTLTAWIGFALIAVGLLVTDGRIFRGSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LPX0</accession>
    <name>A0A1M5LPX0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NADPH:quinone reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0416</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67127.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898903.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0416"/>
    <dbReference type="EnsemblBacteria" id="SHG67127">
        <property type="protein sequence ID" value="SHG67127"/>
        <property type="gene ID" value="SAMN05444003_0416"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002364">
        <property type="entry name" value="Quin_OxRdtase/zeta-crystal_CS"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01162">
        <property type="entry name" value="QOR_ZETA_CRYSTAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PKS_ER" evidence="1">
        <location>
            <begin position="2"/>
            <end position="308"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG67127.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="311" mass="34100" checksum="E007DC2B398DEE5C" modified="2017-03-15" version="1">MRALQNINHKLSLIRGAPEPVRQEGEVKVQIHYASLNPTDADIARGDLDLFIKLARARSSVRTGLEFSGTVAEGSAKFPTGTKVFGYTHLMKGPKTHQDVVSIPESFIAKMPKNLSFSQAAAFPLGAQTSLVALRDIAQLKRGQSVLILGASGGLGVYATQLARHMQLAITGVSGPDGLNLMKELGADEVVNYRRTSIDQMINQFDVVLELSNQYMFRDVRHLLKPHGTFVPTNPQKNLLAIAGNKFRRQKVGYLFVDRGDSTLLTELAGQIAQGVLSVGPVREFDFEDFEQAFASLQQPGQLGRTVMRLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LQB6</accession>
    <name>A0A1M5LQB6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">VPLPA-CTERM protein sorting domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0423</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67294.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898909.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG67294">
        <property type="protein sequence ID" value="SHG67294"/>
        <property type="gene ID" value="SAMN05444003_0423"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022472">
        <property type="entry name" value="VPLPA-CTERM"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03370">
        <property type="entry name" value="VPLPA-CTERM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012951558" evidence="2">
        <location>
            <begin position="22"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="206"/>
            <end position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG67294.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="230" mass="23803" checksum="FA8A285AD2F107AA" modified="2017-03-15" version="1">MVKKFLPVLAASVVIGGSANAAILDFTDLQTLNDLSSNAWEGSILGVGYKVSGSGTIKFNESNVGSSCDDTVLACERDGLGIGDDEIRAGGMTISEGQWITVEFDHAVKITDLYFLDLFRGKNQFAGQFEQAAVSLDDATPLTFDAALTAYGGYLATDDGLFITAKMLKFGAFTGDNLKDRGGNNDYALAGIGIAAGTDTTGLTPVPVPAAGLMLLAGLGGLGALRRSKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LQG7</accession>
    <name>A0A1M5LQG7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0405</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898892.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0405"/>
    <dbReference type="EnsemblBacteria" id="SHG66879">
        <property type="protein sequence ID" value="SHG66879"/>
        <property type="gene ID" value="SAMN05444003_0405"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006979">
        <property type="term" value="P:response to oxidative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000551">
        <property type="entry name" value="MerR-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010211">
        <property type="entry name" value="Redox-sen_tscrpt-act_SoxR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30204:SF0">
        <property type="entry name" value="PTHR30204:SF0"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13411">
        <property type="entry name" value="MerR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00040">
        <property type="entry name" value="HTHMERR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00422">
        <property type="entry name" value="HTH_MERR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01950">
        <property type="entry name" value="SoxR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00552">
        <property type="entry name" value="HTH_MERR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50937">
        <property type="entry name" value="HTH_MERR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH merR-type" evidence="4">
        <location>
            <begin position="4"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG66879.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="145" mass="15725" checksum="67A14BB13B017004" modified="2017-03-15" version="1">MVQGLTIGDLAARTGLAVSAIRFYETHGIVVPVRNAGGHRRYGRQDIRRLSFVMAVQSLGFSLDEIAVHLRDLPAHIAPSKADWARISGNIAEKIDARIAKMQDMRDRLDGCIGCGCLSLEVCALYNPDDVEGRAGVGPRKLNLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LS27</accession>
    <name>A0A1M5LS27_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_0445</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67795.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898948.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0445"/>
    <dbReference type="EnsemblBacteria" id="SHG67795">
        <property type="protein sequence ID" value="SHG67795"/>
        <property type="gene ID" value="SAMN05444003_0445"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003995">
        <property type="term" value="F:acyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006089">
        <property type="entry name" value="Acyl-CoA_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00072">
        <property type="entry name" value="ACYL_COA_DH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00073">
        <property type="entry name" value="ACYL_COA_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="6"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="121"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="227"/>
            <end position="376"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG67795.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="379" mass="40784" checksum="1CCC501EE1172D93" modified="2017-03-15" version="1">MDFSLTEEQSAIFDMAFSFGQENIAPFAQDWDKAGEIPKDLWPRLAELGFGGLYVSEDSGGSGLTRLDATLVFEALSHSCASVAAFLSIHNMCARMIDAYGSDEMKSRILPKALTMETFLSYCLTEPGSGSDAAALKTKAERTNAGYTLNGTKAFISGGGYSDAYIVMARTGDTGPKGISALLVEDGAEGLSFGGLEVKMGWRSQPTRQVQLDGCSVPATNLLGEEGKGFTYAMQGLDGGRLNIAACSLGAAQAALDHTVAYMAERKAFGKSINQFQALQFRLADMEIALQSARTFLRQAAWKLDTGAPDATKFCAMAKKLVTETGSEVADQCLQLHGGYGYLADYGIEKIVRDLRVHQILEGTNEIMRMIVSRDMIKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LSK4</accession>
    <name>A0A1M5LSK4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0449</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898954.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0449"/>
    <dbReference type="EnsemblBacteria" id="SHG67890">
        <property type="protein sequence ID" value="SHG67890"/>
        <property type="gene ID" value="SAMN05444003_0449"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="2"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG67890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="292" mass="32546" checksum="35B0D15FD5D54ABA" modified="2017-03-15" version="1">MFNWDDMRVFLGVAREESLSSAAPRLRMDPATLSRRIARLEAELGQVLFVKSPQGYRLTDFGKRLMKEAADAEAAFLRAADVSTDNSVGLSGQIRIGAPDGCASFLLPQVCAAIQADNPELEIQILSLPRIVNLSQREADMAITVSPPETGRYTVRKITDYQLHLAMRSDQPEPQSLEEVRGVPVVGYIQDMIFDKELDYLDALHAPEVRLTSNSVSVQMQLLKQSNGIGFVHDFALPAFPDLRRVLDDQISLRRSYYLVRHTSDRQSERLQAFAEALTSGLQAEVARLEGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LT46</accession>
    <name>A0A1M5LT46_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0464</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68228.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898978.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0464"/>
    <dbReference type="EnsemblBacteria" id="SHG68228">
        <property type="protein sequence ID" value="SHG68228"/>
        <property type="gene ID" value="SAMN05444003_0464"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG68228.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="301" mass="34015" checksum="C5F46D21DF89625D" modified="2017-03-15" version="1">MDWDKLRIFHAVADAGSLTHAGDTLHLSQSAVSRQIRALEEALNTTLFHRHARGLILTEQGELLFDATKSMNKRLEAASARIRDSEEEVFGELRVTTTIGFGTLWLAPRLPHLYEKYPDLKIDLMLEERVLDLPMREADVAIRMKEPSQADLIRKRLMSVRMRLYATKEYIQKNGAIDAATDISKHRLICQSLSSAQVAAGTTLVRHLLSYDVPSLFTVNNYYGVLQGVLNGLGVGVLPDYVTEDFPDLVRVLPDLESGEVPVFLAYPEELRQSKRIAAFRDFVQDEIISHRRKMREQAAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LVU1</accession>
    <name>A0A1M5LVU1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF2087 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0475</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68493.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898988.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG68493">
        <property type="protein sequence ID" value="SHG68493"/>
        <property type="gene ID" value="SAMN05444003_0475"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018656">
        <property type="entry name" value="DUF2087"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09860">
        <property type="entry name" value="DUF2087"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF2087" evidence="1">
        <location>
            <begin position="82"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09860"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG68493.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="190" mass="21677" checksum="4F144380367CAA97" modified="2017-03-15" version="1">MTRSPLPLVIEDVSAFAQTLRKHWPTEEPSHAQLLSLIAKSAGYRNHQHLKAEVQADPDLSKEAERRIHDALRVFDDTGQMLRWPKKTSVQALCMAWFWSRLPSKTDLSEPQVNDILRSAERFGDHVLLRRSLIEHKLVTRTLDGATYRRIEQSPSPEARQVIRVLSERVLRSQANPDNAGTRPAFGEAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LXR9</accession>
    <name>A0A1M5LXR9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">DNA polymerase III, chi subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0536</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69828.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899072.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0536"/>
    <dbReference type="EnsemblBacteria" id="SHG69828">
        <property type="protein sequence ID" value="SHG69828"/>
        <property type="gene ID" value="SAMN05444003_0536"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007459">
        <property type="entry name" value="DNA_pol3_chi"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036768">
        <property type="entry name" value="PolIII_chi_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38767">
        <property type="entry name" value="PTHR38767"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04364">
        <property type="entry name" value="DNA_pol3_chi"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102400">
        <property type="entry name" value="SSF102400"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG69828.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="153" mass="16309" checksum="063F9F42475ED29B" modified="2017-03-15" version="1">MGAVYFYHLTDTPLEATLPMLLSKARGAGWRILVRGDDQALLERLDQTLWNGPVDDFLPHGLAGGPHDGEQPILLASGLAADGFECVMSVGGSTITASEVGLSERCCVLFDGHDEAALNVARGQWKMLTDAGCAAQYWAQDNGSWTKKAESGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LYP7</accession>
    <name>A0A1M5LYP7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0550</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70148.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899091.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG70148">
        <property type="protein sequence ID" value="SHG70148"/>
        <property type="gene ID" value="SAMN05444003_0550"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="47"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG70148.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="76" mass="8692" checksum="0C7D5FEDC6D53EDF" modified="2017-03-15" version="1">MDDRSTPNTLEEKAGQLQHLLLNWLLPIASVVTLISIWIAVSRGWERGSIVTVVILICAFFIARSFYHFSKKQFSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LZH6</accession>
    <name>A0A1M5LZH6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Acyl carrier protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0563</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70418.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899111.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0563"/>
    <dbReference type="EnsemblBacteria" id="SHG70418">
        <property type="protein sequence ID" value="SHG70418"/>
        <property type="gene ID" value="SAMN05444003_0563"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1200.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036736">
        <property type="entry name" value="ACP-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009081">
        <property type="entry name" value="PP-bd_ACP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006162">
        <property type="entry name" value="Ppantetheine_attach_site"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00550">
        <property type="entry name" value="PP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47336">
        <property type="entry name" value="SSF47336"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50075">
        <property type="entry name" value="CARRIER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00012">
        <property type="entry name" value="PHOSPHOPANTETHEINE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0596">Phosphopantetheine</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Carrier" evidence="4">
        <location>
            <begin position="1"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="modified residue" description="O-(pantetheine 4'-phosphoryl)serine" evidence="3">
        <location>
            <position position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022450"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00258"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG70418.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="86" mass="9310" checksum="B4AACA1B62ACA9D2" modified="2017-03-15" version="1">MSVQDKIIEIIAEQALLEPSDISLDDTLESLGVDSLALVESIFAIEEAFDISVPFNANDPTASDFDITSVKSIIRAVEKLVADQKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M171</accession>
    <name>A0A1M5M171_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase</fullName>
            <shortName evidence="7">UDP-N-acetylglucosamine acyltransferase</shortName>
            <ecNumber evidence="7">2.3.1.129</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">lpxA</name>
        <name evidence="9" type="ORF">SAMN05444003_0590</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>a (3R)-hydroxyacyl-[ACP] + UDP-N-acetyl-alpha-D-glucosamine = a UDP-3-O-[(3R)-3-hydroxyacyl]-N-acetyl-alpha-D-glucosamine + holo-[ACP]</text>
            <dbReference type="Rhea" id="RHEA:67812"/>
            <dbReference type="Rhea" id="RHEA-COMP:9685"/>
            <dbReference type="Rhea" id="RHEA-COMP:9945"/>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
            <dbReference type="ChEBI" id="CHEBI:64479"/>
            <dbReference type="ChEBI" id="CHEBI:78827"/>
            <dbReference type="ChEBI" id="CHEBI:173225"/>
            <dbReference type="EC" id="2.3.1.129"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Glycolipid biosynthesis; lipid IV(A) biosynthesis; lipid IV(A) from (3R)-3-hydroxytetradecanoyl-[acyl-carrier-protein] and UDP-N-acetyl-alpha-D-glucosamine: step 1/6.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homotrimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the transferase hexapeptide repeat family. LpxA subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.129" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70996.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899146.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0590"/>
    <dbReference type="EnsemblBacteria" id="SHG70996">
        <property type="protein sequence ID" value="SHG70996"/>
        <property type="gene ID" value="SAMN05444003_0590"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00359">
        <property type="reaction ID" value="UER00477"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008780">
        <property type="term" value="F:acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009245">
        <property type="term" value="P:lipid A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03351">
        <property type="entry name" value="LbH_UDP-GlcNAc_AT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00387">
        <property type="entry name" value="LpxA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029098">
        <property type="entry name" value="Acetyltransf_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037157">
        <property type="entry name" value="Acetyltransf_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001451">
        <property type="entry name" value="Hexapep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018357">
        <property type="entry name" value="Hexapep_transf_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010137">
        <property type="entry name" value="Lipid_A_LpxA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43480">
        <property type="entry name" value="PTHR43480"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13720">
        <property type="entry name" value="Acetyltransf_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00132">
        <property type="entry name" value="Hexapep"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000456">
        <property type="entry name" value="UDP-GlcNAc_acltr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="SSF51161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01852">
        <property type="entry name" value="lipid_A_lpxA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00101">
        <property type="entry name" value="HEXAPEP_TRANSFERASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7 9" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 7" id="KW-0441">Lipid A biosynthesis</keyword>
    <keyword evidence="1 7" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="5 7" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0677">Repeat</keyword>
    <keyword evidence="3 7 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Acetyltransf_11" evidence="8">
        <location>
            <begin position="176"/>
            <end position="252"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF13720"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG70996.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="260" mass="27597" checksum="A3E2D29A522438E1" modified="2017-03-15" version="1">MSEIHPSAVIAESAKIGQGCSIGPFCVIGGDVVLGDDVTLKSHVVIDGDTHIGDGTTIFSFAVVGEIPQDLKFDGERTRVRIGARNRIREHVTINSGTSGGGGETRIGDDGLFMAGCHIAHDAQIGDRVIVVNSSAVAGHCILEDDVIVGGLSGVHQFVRIGQGAIIGALSMVTNDVIPHGLVMGPRAELEGLNLVGLKRKGVDRKDIMALRAAFQSLKDGEGTFHDRAERLKDEADSPYVKHMVDFVLGETDRNFLTPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M3F3</accession>
    <name>A0A1M5M3F3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0622</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG71844.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899176.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG71844">
        <property type="protein sequence ID" value="SHG71844"/>
        <property type="gene ID" value="SAMN05444003_0622"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG71844.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="130" mass="13941" checksum="584879CFA0249F01" modified="2017-03-15" version="1">MISIAPTYASVPAAVLATTFAGPAFGDSLLCTLQCQTGSECSDETVELAFDIDRNQFVSAVDPNEPPYRKVTTVKMGQETFEAEPFLVKDTRGFWAENLNAIFVVNADGSATFSNSTTGQTLTGLCEDQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M682</accession>
    <name>A0A1M5M682_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">3-hydroxybutyrate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0661</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72801.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899252.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0661"/>
    <dbReference type="EnsemblBacteria" id="SHG72801">
        <property type="protein sequence ID" value="SHG72801"/>
        <property type="gene ID" value="SAMN05444003_0661"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003858">
        <property type="term" value="F:3-hydroxybutyrate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011294">
        <property type="entry name" value="3-OHbutyrate_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01963">
        <property type="entry name" value="PHB_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG72801.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="254" mass="26856" checksum="9FA5AFD30B61C805" modified="2017-03-15" version="1">MAKTAVITGSNSGIGLGVAWEMARAGVDVVLNSFTDDEKDHALATEIAKETGVNARYIQADMSDGDACRALIETAGGCDILVNNAGIQHVSPIEDFPVEKWDAIIAINMSSAFHTTATALPVMRERGWGRIVNIASAHGLTASPFKSAYIAAKHGVVGMTKTVALETAREQITCNAICPGYVLTPLVEAQIPDTAKKYGMTEEEVKQKVILERQPSKEFATVEQLGGTVNFLCSDAAAQITGTTISVDGGWTAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M868</accession>
    <name>A0A1M5M868_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0676</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73169.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG73169">
        <property type="protein sequence ID" value="SHG73169"/>
        <property type="gene ID" value="SAMN05444003_0676"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG73169.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="70" mass="8048" checksum="3CA31A0D84E9FF60" modified="2017-03-15" version="1">MIKNPKLISKAEFTVDMIETLQQYFEAYEVDGVVEVEVTSEGLWLPNPETGGRQFLGRAKLEQQVQHPRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MC51</accession>
    <name>A0A1M5MC51_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Agmatinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0753</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the arginase family. Agmatinase subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74858.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899412.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0753"/>
    <dbReference type="EnsemblBacteria" id="SHG74858">
        <property type="protein sequence ID" value="SHG74858"/>
        <property type="gene ID" value="SAMN05444003_0753"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016813">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901564">
        <property type="term" value="P:organonitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005925">
        <property type="entry name" value="Agmatinase-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006035">
        <property type="entry name" value="Ureohydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023696">
        <property type="entry name" value="Ureohydrolase_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11358">
        <property type="entry name" value="PTHR11358"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00491">
        <property type="entry name" value="Arginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036979">
        <property type="entry name" value="Arginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00116">
        <property type="entry name" value="ARGINASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52768">
        <property type="entry name" value="SSF52768"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01230">
        <property type="entry name" value="agmatinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51409">
        <property type="entry name" value="ARGINASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG74858.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="325" mass="35093" checksum="CA06B8FEF7A45B15" modified="2017-03-15" version="1">MQDHGYKGGRLNLPFVGISTFAKSRHVEDWESIDADVAILGAPFDFGTQWRSGARFGPRAVREASTLFSFGHAGAYDHEDDATYLDASVRIADLGDADIIHTKTDESHENIAFGVRKALQAGALPVVIGGDHSVNIPCINAFADDCAENGPIHIVQIDAHLDFVDERHGVTAGHGNPMRRAIEKDYVSGMTQLGIRNVSSTAKEGYEDARARGSDILSVRQVRALGTDAVLDRIPQGARVYVTIDIDAFCPSIASGTGTPSHGGFLYYDVLEILQGLSKRNHIVGVDLVEVAPAYDPTESTQILAAQVLMNFIGFIFHESNKSST</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MD97</accession>
    <name>A0A1M5MD97_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Phage integrase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0766</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75162.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG75162">
        <property type="protein sequence ID" value="SHG75162"/>
        <property type="gene ID" value="SAMN05444003_0766"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tyr recombinase" evidence="2">
        <location>
            <begin position="285"/>
            <end position="471"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG75162.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="484" mass="54725" checksum="8968FB662FDBFDB5" modified="2017-03-15" version="1">MAITMTLPYLTRNKGKLVFRRRIPKALTNRFSKTFFETRLLNQETGAAQVEEHTALIAAFDRIVSDALSGEPSAQGDAAIERYIDATRNRLTDRRTQKEVWEDYKVEARNLVRSVHIGGAIVDDELEDEARRLVAEDLERSGADPMLYKAVVLPDAEPPEPTVGDAVKFYEKETVGENPKKSANDTFKRAVRRLEATWGPLDMIPLVDLKRQHARDVRDKLAAEPKYGGGPRSPNSIQREVNSMKSIIETGIVEFDLQTKVSNPFKNLKIEGAVESRGAAKSEWELREPLPYDILKSTRHRILNRTRIIELRHIWRLLQATGCRGAEISGLRVDDVDLEHDVPHVWVRWNDERSIKTKSSIRPIPLLGDGLLAAKEAVEIAGENEYVFARYAKEGGPDNVSGALMRHMREVTKEDVHVVYSLRHNMKQWLGLAEVSEREEDRLLGHTQDAVGNRHYGGLLERLRGTANALEAALGQSPEDIWEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-06-02" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MDI3</accession>
    <name>A0A1M5MDI3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0772</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75271.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899433.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG75271">
        <property type="protein sequence ID" value="SHG75271"/>
        <property type="gene ID" value="SAMN05444003_0772"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG75271.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="127" mass="14473" checksum="E7F5616358DAEC1B" modified="2017-03-15" version="1">MNTHYQRPTGSNATSVGDKNRRRWSRCLRSRVFELFKPIDFLNAEGSVVLNAIHKQMADHRRGRWNDRPSWVSTRIRTDQMAIINMLQSRHLNATGKEISKAEVLAALMAAGLETIINHRDFGGDAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MJW6</accession>
    <name>A0A1M5MJW6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 7">6-phosphogluconolactonase</fullName>
            <shortName evidence="7">6PGL</shortName>
            <ecNumber evidence="5 7">3.1.1.31</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">pgl</name>
        <name evidence="9" type="ORF">SAMN05444003_0867</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 7">Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>6-phospho-D-glucono-1,5-lactone + H2O = 6-phospho-D-gluconate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:12556"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57955"/>
            <dbReference type="ChEBI" id="CHEBI:58759"/>
            <dbReference type="EC" id="3.1.1.31"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 7">Carbohydrate degradation; pentose phosphate pathway; D-ribulose 5-phosphate from D-glucose 6-phosphate (oxidative stage): step 2/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 7">Belongs to the glucosamine/galactosamine-6-phosphate isomerase family. 6-phosphogluconolactonase subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.1.1.31" evidence="5 7"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77531.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899572.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0867"/>
    <dbReference type="EnsemblBacteria" id="SHG77531">
        <property type="protein sequence ID" value="SHG77531"/>
        <property type="gene ID" value="SAMN05444003_0867"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00115">
        <property type="reaction ID" value="UER00409"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017057">
        <property type="term" value="F:6-phosphogluconolactonase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006098">
        <property type="term" value="P:pentose-phosphate shunt"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd01400">
        <property type="entry name" value="6PGL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005900">
        <property type="entry name" value="6-phosphogluconolactonase_DevB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006148">
        <property type="entry name" value="Glc/Gal-6P_isomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037171">
        <property type="entry name" value="NagB/RpiA_transferase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039104">
        <property type="entry name" value="PGLS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11054">
        <property type="entry name" value="PTHR11054"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01182">
        <property type="entry name" value="Glucosamine_iso"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100950">
        <property type="entry name" value="SSF100950"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01198">
        <property type="entry name" value="pgl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glucosamine_iso" evidence="8">
        <location>
            <begin position="7"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002681"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004961"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010662"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00020337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU365095"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01182"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG77531.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="223" mass="23779" checksum="55C2A0CB2EE24017" modified="2017-03-15" version="1">MKLIEYPDKEMMMMRLADILASELEDVLLTQDSASLAVPGGTTPGPVFDSLCGAPLDWSRVSVMLTDERWVPEGSGRSNTRLLRGRLLTGRAASATLVPLYADAEHPEDMLDELNTGIEKATPISVMLLGMGADMHTASIFPGADNLEAALTGDSNLVAMRAPGAPEPRITLSAKVINAAINRHIVIVGAEKKEALERAQTLPATEAPVSAILQGTTVHWAEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MM01</accession>
    <name>A0A1M5MM01_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">3-oxoacyl-[acyl-carrier-protein] reductase</fullName>
            <ecNumber evidence="3">1.1.1.100</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0902</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>a (3R)-hydroxyacyl-[ACP] + NADP(+) = a 3-oxoacyl-[ACP] + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:17397"/>
            <dbReference type="Rhea" id="RHEA-COMP:9916"/>
            <dbReference type="Rhea" id="RHEA-COMP:9945"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:78776"/>
            <dbReference type="ChEBI" id="CHEBI:78827"/>
            <dbReference type="EC" id="1.1.1.100"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Lipid metabolism; fatty acid biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.100" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78338.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899615.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0902"/>
    <dbReference type="EnsemblBacteria" id="SHG78338">
        <property type="protein sequence ID" value="SHG78338"/>
        <property type="gene ID" value="SAMN05444003_0902"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00094"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004316">
        <property type="term" value="F:3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011284">
        <property type="entry name" value="3oxo_ACP_reduc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01830">
        <property type="entry name" value="3oxo_ACP_reduc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="3" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="3" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="3" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="2 3" id="KW-0521">NADP</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="152"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="38"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="87"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="152"/>
            <end position="156"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="185"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR611284-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR611284-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU366074"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG78338.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="245" mass="25094" checksum="DAF5891873A99187" modified="2017-03-15" version="1">MFDLTGKNALVTGASGGIGGAIAKSLHEAGATVGLSGTRVEPLEALASELGDRAHVLPCNLSDAEAVTALPKSAADSMGSVDILVNNAGITRDNIFLRMSDEEWASVLEVNLTSTMRLCKGVIRGMMKSRWGRIVNISSVVGATGNPGQANYAASKAGMVGMSKSIAYEVASRGITVNCVAPGFITTAMTDKLNDDQKSGILGQIPAGRMGEADEIAAAVLYLSSAEAGYVTGTTLHVNGGMAML</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MPP5</accession>
    <name>A0A1M5MPP5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LuxR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0933</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79042.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0933"/>
    <dbReference type="EnsemblBacteria" id="SHG79042">
        <property type="protein sequence ID" value="SHG79042"/>
        <property type="gene ID" value="SAMN05444003_0933"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005143">
        <property type="entry name" value="TF_LuxR_autoind-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036693">
        <property type="entry name" value="TF_LuxR_autoind-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03472">
        <property type="entry name" value="Autoind_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75516">
        <property type="entry name" value="SSF75516"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Autoind_bind" evidence="1">
        <location>
            <begin position="32"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG79042.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="163" mass="18363" checksum="EB4AB6256FAAA136" modified="2017-03-15" version="1">MSKDVKFCSELEELSEKASKGFALAFQIRLTTPSYLFQSYSQEWNKHYSENGLLMQDPTVMWGFENQGTIRWSDLVHLDEKGVIASAADFGMKFGMTWAIANDDSRSIGSFARSDREFSDEEMSELLAIVQTIHNATLSLTPLSTNDLQALTSRGYLISQNLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MQC7</accession>
    <name>A0A1M5MQC7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Protein-export membrane protein SecF</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">secF</name>
        <name evidence="10" type="ORF">SAMN05444003_0946</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Forms a complex with SecD. Part of the essential Sec protein translocation apparatus which comprises SecA, SecYEG and auxiliary proteins SecDF-YajC and YidC.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell membrane</location>
            <topology evidence="9">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the SecD/SecF family. SecF subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79282.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899689.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0946"/>
    <dbReference type="EnsemblBacteria" id="SHG79282">
        <property type="protein sequence ID" value="SHG79282"/>
        <property type="gene ID" value="SAMN05444003_0946"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015450">
        <property type="term" value="F:protein-transporting ATPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0065002">
        <property type="term" value="P:intracellular protein transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006605">
        <property type="term" value="P:protein targeting"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043952">
        <property type="term" value="P:protein transport by the Sec complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01464_B">
        <property type="entry name" value="SecF_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022813">
        <property type="entry name" value="SecD/SecF_arch_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022645">
        <property type="entry name" value="SecD/SecF_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022646">
        <property type="entry name" value="SecD/SecF_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005665">
        <property type="entry name" value="SecF_bac"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30081">
        <property type="entry name" value="PTHR30081"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07549">
        <property type="entry name" value="Sec_GG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02355">
        <property type="entry name" value="SecD_SecF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01755">
        <property type="entry name" value="SECFTRNLCASE"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00916">
        <property type="entry name" value="2A0604s01"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00966">
        <property type="entry name" value="3a0501s07"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 9" id="KW-0653">Protein transport</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 9" id="KW-0811">Translocation</keyword>
    <keyword evidence="4 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 9" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="20"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="143"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="170"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="196"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="250"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="274"/>
            <end position="300"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG79282.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="322" mass="35404" checksum="5FDAD20DFBFCE213" modified="2017-03-15" version="1">MRLRLVKQGTNIDFFSRAKLWLGISGFMMVLAVVSFMVQGLNFGIDFQGGTSIRTQAEAPIVVSEYRDAIEPLELGDVSITEVFDPSFEENQNVAMIRIQAQEGEESVTNETIGQVQTALQAMDPTLTFTAVESVGPKVSGELIQTAFIAVALAVLAILLYIWLRFEWQFAVGAVLALVHDVVLTVGVFSELQIKFDLAIIAAILTIVGYSINDTVIVYDRVRENLRKYKKKDLKDVLNISINETLSRTLMTSVTTMLALLSLFILGGDVIRGFVFAMMWGVLIGTYSSIFVATAILLVLGVKRDWSKKAVAAGTRYGDIDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MQK2</accession>
    <name>A0A1M5MQK2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0958</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79505.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899705.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG79505">
        <property type="protein sequence ID" value="SHG79505"/>
        <property type="gene ID" value="SAMN05444003_0958"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG79505.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="195" mass="20043" checksum="E386C30DB408E7C2" modified="2017-03-15" version="1">MRLSFLPALAMATALSGCLQDLYTDSGFTNVTSTGSVTERLGQQGIASVIDADGDGFAYSSGTESGGGLRAVAGFTNPSDIGLRPVTSVGRYTGRYELIEVYDIDLRGGFISGSQDQVSGSIVLNADFSTGTLTGRAGELSVSGRALGSQLTGGVQYRGVSGDLRGVLGDDKAIGAFHGNDADLIYAGGFLTYRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MS22</accession>
    <name>A0A1M5MS22_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0984</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80026.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899728.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0984"/>
    <dbReference type="EnsemblBacteria" id="SHG80026">
        <property type="protein sequence ID" value="SHG80026"/>
        <property type="gene ID" value="SAMN05444003_0984"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG80026.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="205" mass="22753" checksum="A35943D5300C8029" modified="2017-03-15" version="1">MPLQNRALPTGEIVAIDARGTLTGNRGIIHGPDKQLSTKRWSHHAWICCVLDWQGRKRDVMSGRKWTELFFLDEATALAAGHRPCGYCRREAYQAFKQAWHDAFGGDVGAKQMDQVLHAERVEPRSRSQKTHLAEAKALPSGAMYRYGGKIYLVADRLVRPFSVKGYGPSETVPEGKVEVLTPPSLVKVLSAGYKPLLHASPFST</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MUS8</accession>
    <name>A0A1M5MUS8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1037</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81110.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899776.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG81110">
        <property type="protein sequence ID" value="SHG81110"/>
        <property type="gene ID" value="SAMN05444003_1037"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012928879" evidence="1">
        <location>
            <begin position="23"/>
            <end position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG81110.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="142" mass="15498" checksum="75644BC10BFB0DAC" modified="2017-03-15" version="1">MNNKLLKVLCLVLGLGPNLASAQQVQIADNFLGGRMQWDTAAYTLIRWIPTIVDGEIYVCGAISTRGAARIKRFGSQMEARSRVFMGNTLIKRNLNEFTDISSRHIDDGLDGQMAGCGGTGVQGTAEDLANVRLDMFTGPYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MVN6</accession>
    <name>A0A1M5MVN6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1051</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81394.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899789.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1051"/>
    <dbReference type="EnsemblBacteria" id="SHG81394">
        <property type="protein sequence ID" value="SHG81394"/>
        <property type="gene ID" value="SAMN05444003_1051"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG81394.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="252" mass="26573" checksum="7B680533C2AB27CA" modified="2017-03-15" version="1">MQIENTHALITGGGTGIGLDIALALAKQGAQVTITGRRAEVLEQAAEQSENLFPLVMDVSDEGSVREGVAEAAALRGPVEICVANAGIAEGKPFAKVTMDDWRRMMATNLDGVFLTLQAALATIPEDQPGRMIVMSSIAGVKGLNRAVPYTVSKHGIVGLIRGLALEYKTRPVTFNALCPGYVETDIVRQQLPGLIDRLGLDEDAAKAVFAAGNEHDRLLQVDEITGAALWLCSEGARSVNGQTIEIAGGQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MXD9</accession>
    <name>A0A1M5MXD9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 7">Carbamoyl-phosphate synthase small chain</fullName>
            <ecNumber evidence="7">6.3.5.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6 7">Carbamoyl-phosphate synthetase glutamine chain</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">carA</name>
        <name evidence="9" type="ORF">SAMN05444003_1079</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>2 ATP + H2O + hydrogencarbonate + L-glutamine = 2 ADP + carbamoyl phosphate + 2 H(+) + L-glutamate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:18633"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17544"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.5.5"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 7">Amino-acid biosynthesis; L-arginine biosynthesis; carbamoyl phosphate from bicarbonate: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="7">Pyrimidine metabolism; UMP biosynthesis via de novo pathway; (S)-dihydroorotate from bicarbonate: step 1/3.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Composed of two chains; the small (or glutamine) chain promotes the hydrolysis of glutamine to ammonia, which is used by the large (or ammonia) chain to synthesize carbamoyl phosphate.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the CarA family.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.5" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81968.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899812.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1079"/>
    <dbReference type="EnsemblBacteria" id="SHG81968">
        <property type="protein sequence ID" value="SHG81968"/>
        <property type="gene ID" value="SAMN05444003_1079"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00171"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00070">
        <property type="reaction ID" value="UER00115"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004088">
        <property type="term" value="F:carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006207">
        <property type="term" value="P:'de novo' pyrimidine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044205">
        <property type="term" value="P:'de novo' UMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006526">
        <property type="term" value="P:arginine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01744">
        <property type="entry name" value="GATase1_CPSase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01209">
        <property type="entry name" value="CPSase_S_chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006274">
        <property type="entry name" value="CarbamoylP_synth_ssu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002474">
        <property type="entry name" value="CarbamoylP_synth_ssu_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036480">
        <property type="entry name" value="CarbP_synth_ssu_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035686">
        <property type="entry name" value="CPSase_GATase1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017926">
        <property type="entry name" value="GATASE"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00988">
        <property type="entry name" value="CPSase_sm_chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00117">
        <property type="entry name" value="GATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01097">
        <property type="entry name" value="CPSase_sm_chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52021">
        <property type="entry name" value="SSF52021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01368">
        <property type="entry name" value="CPSaseIIsmall"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="4 7" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="7" id="KW-0436">Ligase</keyword>
    <keyword evidence="7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CPSase_sm_chain" evidence="8">
        <location>
            <begin position="9"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="region of interest" description="CPSase" evidence="7">
        <location>
            <begin position="1"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="7">
        <location>
            <position position="276"/>
        </location>
    </feature>
    <feature type="active site" evidence="7">
        <location>
            <position position="360"/>
        </location>
    </feature>
    <feature type="active site" evidence="7">
        <location>
            <position position="362"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007800"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00019036"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00030197"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM01097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG81968.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="386" mass="41405" checksum="84011E9845338149" modified="2017-03-15" version="1">MSDNANSKPTACLALADGTVFYGFGFGATGETTAELCFNTAMTGYQEIMTDPSYAGQVVTFTFPHIGNTGVNPEDDETADPVAAGMVVKWDPTVASNWRATDELRDWLAKRGRIGIGGVDTRRLTRAIRQQGAPHVALAHDPDGNFDIDALVKAARAFSGLEGLDLAKEVTCAQSYHWNEMRWAWPEGYSPQHQPKHKVVAIDYGAKRNILRCLASAGCDVTVLPATATAEDVLALSPDGVFLSNGPGDPAATGEYAVPMIQGVLEQSDVPVFGICLGHQMLALALGAKTIKMNHGHHGANHPVKDIETGKVEITSMNHGFAVDSQTLPQGVKETHTSLFDGSNCGIRMTDRPVFSVQYHPEASPGPQDSYYLFERFAEAMAARAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N1J9</accession>
    <name>A0A1M5N1J9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1134</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83325.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899859.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1134"/>
    <dbReference type="EnsemblBacteria" id="SHG83325">
        <property type="protein sequence ID" value="SHG83325"/>
        <property type="gene ID" value="SAMN05444003_1134"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009394">
        <property type="entry name" value="MmcB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06319">
        <property type="entry name" value="MmcB-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF031796">
        <property type="entry name" value="UPC031796"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG83325.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="152" mass="17299" checksum="C554F1170F33935C" modified="2017-03-15" version="1">MPEDTSQPQLMPGQLLARGVCRHLRQHDFVSVVELTPTSGLRVDVMALGPKGEVWVIECKSSRADFQSDHKWQGYLEWCDRFFWAVDQDFPTELLPDDTGLIIADGYDAEILRMGPETKLAAARRKVMIQKFARHAAIRAQAARDPNAIYDW</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N6L0</accession>
    <name>A0A1M5N6L0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glyoxalase-like domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1212</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85097.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899925.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1212"/>
    <dbReference type="EnsemblBacteria" id="SHG85097">
        <property type="protein sequence ID" value="SHG85097"/>
        <property type="gene ID" value="SAMN05444003_1212"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025870">
        <property type="entry name" value="Glyoxalase-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13468">
        <property type="entry name" value="Glyoxalase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyoxalase-like_dom" evidence="1">
        <location>
            <begin position="4"/>
            <end position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13468"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG85097.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="203" mass="22219" checksum="E33FACF1C40E1A0C" modified="2017-03-15" version="1">MLHLDHIAVVAENLEDGRRWVEGILGVPLQQGGKHDRFGTHNYLLGLGPDLYFEVIAKDPNAAPTGRPTWFGLDHFRGAPRLGNWICSADDYDAALDSAPKTVGPALSLSRDDITWQLTAPDDGNLPFDGAFPSLIRWGEGVVPPPAKLPDQGVRLTKWEVHHPKASDIAKQVTMVDDRVVWVDGPQGFRAEFDTPAGTKVLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N787</accession>
    <name>A0A1M5N787_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1222</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85312.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900443.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1222"/>
    <dbReference type="EnsemblBacteria" id="SHG85312">
        <property type="protein sequence ID" value="SHG85312"/>
        <property type="gene ID" value="SAMN05444003_1222"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005829">
        <property type="entry name" value="Sugar_transporter_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00216">
        <property type="entry name" value="SUGAR_TRANSPORT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="18"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="51"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="83"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="108"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="140"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="168"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="217"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="244"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="278"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="309"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="340"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="375"/>
            <end position="397"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="17"/>
            <end position="403"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG85312.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="404" mass="42145" checksum="1BE51B6C3E61A613" modified="2017-03-15" version="1">MNTLNPVRFLDRTSPPHILTLTLLAGISALNMSIFLPSLSGMTEYFGTSYATMQLAVSGYFLATAVIQFVIGPISDKFGRRTVVLVSLSIFILATIGAMLSTTAEMFLFFRLLQAAVATSISLSRAIVRDMFDTRKAASMIGYVTMGMALVPMVGPMIGGAIDEAFGWQAIFTFLTFAGIAVLLLCYFDLGETVRGGGMGFADQLRTYPELLKSPRFWGYTAAAAFGSGAFFALLGGASYVSATVFGLTPFWSGVALGAPAIGYAVGNGISGRFTERFGINAMALAGSIITVVGLGISLILTLSGITSAFLFFSFVTFLGLGNGLLMPNTSVGLMSVRPHLAGTASGLGAAIMITGGAVLSQLAGTLLDGGDSALPLQLVMVSTSALACISMIFVIVRARQVEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N8Y5</accession>
    <name>A0A1M5N8Y5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Ceramidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1255</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86066.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899960.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1255"/>
    <dbReference type="EnsemblBacteria" id="SHG86066">
        <property type="protein sequence ID" value="SHG86066"/>
        <property type="gene ID" value="SAMN05444003_1255"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016811">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006672">
        <property type="term" value="P:ceramide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008901">
        <property type="entry name" value="ACER"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05875">
        <property type="entry name" value="Ceramidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="23"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="48"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="71"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="99"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="127"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="155"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="189"/>
            <end position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG86066.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="218" mass="24681" checksum="EFB03FC99CDD83E3" modified="2017-03-15" version="1">MDWFQQFDGYCERTDLTYWSEPINAVTNLAFIVAALIMWRLVGQNFRAGILCVILFLIGSGSYLFHTHATVWAGLADVAPIGAFILFYLYLVNRDLLGWPLWAALLGTIAFLPYAAAVTTIAQALPFFFISSFYWTVPLLLLIYAAALRKNRPRLARGFLVGAVILSISITFRSLDEILCDTIPFGTHFLWHCLNAVMLAYMIHVYARHVLADRPQPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N9T9</accession>
    <name>A0A1M5N9T9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">D-aminoacyl-tRNA deacylase</fullName>
            <shortName evidence="1">DTD</shortName>
            <ecNumber evidence="1">3.1.1.96</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Gly-tRNA(Ala) deacylase</fullName>
            <ecNumber evidence="1">3.1.1.-</ecNumber>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">dtd</name>
        <name evidence="2" type="ORF">SAMN05444003_1267</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA-based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a D-aminoacyl-tRNA + H2O = a D-alpha-amino acid + a tRNA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13953"/>
            <dbReference type="Rhea" id="RHEA-COMP:10123"/>
            <dbReference type="Rhea" id="RHEA-COMP:10124"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:59871"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:79333"/>
            <dbReference type="EC" id="3.1.1.96"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>glycyl-tRNA(Ala) + H2O = glycine + H(+) + tRNA(Ala)</text>
            <dbReference type="Rhea" id="RHEA:53744"/>
            <dbReference type="Rhea" id="RHEA-COMP:9657"/>
            <dbReference type="Rhea" id="RHEA-COMP:13640"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78522"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="1">A Gly-cisPro motif from one monomer fits into the active site of the other monomer to allow specific chiral rejection of L-amino acids.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the DTD family.</text>
    </comment>
    <dbReference type="EC" id="3.1.1.96" evidence="1"/>
    <dbReference type="EC" id="3.1.1.-" evidence="1"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86280.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899972.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1267"/>
    <dbReference type="EnsemblBacteria" id="SHG86280">
        <property type="protein sequence ID" value="SHG86280"/>
        <property type="gene ID" value="SAMN05444003_1267"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051499">
        <property type="term" value="F:D-aminoacyl-tRNA deacylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106026">
        <property type="term" value="F:Gly-tRNA(Ala) hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043908">
        <property type="term" value="F:Ser(Gly)-tRNA(Ala) hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019478">
        <property type="term" value="P:D-amino acid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.80.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00518">
        <property type="entry name" value="Deacylase_Dtd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003732">
        <property type="entry name" value="Daa-tRNA_deacyls_DTD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023509">
        <property type="entry name" value="DTD-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10472">
        <property type="entry name" value="PTHR10472"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02580">
        <property type="entry name" value="Tyr_Deacylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69500">
        <property type="entry name" value="SSF69500"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00256">
        <property type="entry name" value="TIGR00256"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="1" id="KW-0820">tRNA-binding</keyword>
    <feature type="short sequence motif" description="Gly-cisPro motif, important for rejection of L-amino acids" evidence="1">
        <location>
            <begin position="137"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00518"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG86280.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="145" mass="15344" checksum="A8EC7A3C99D5863D" modified="2017-03-15" version="1">MRALLQRVSSANVVVDGEKIGAIDRGLLILVCGMQGDDETKPRQLAAKISKLRIFPDDAGKMNKSIVDIGGAALIVSQFTLAADTSRGNRPGFSQAAPPELGNALYEQFIEEIVALGIPTQTGSFGADMKVGLTNDGPVTIWMDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NA05</accession>
    <name>A0A1M5NA05_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phosphoglycolate phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1271</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899976.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1271"/>
    <dbReference type="EnsemblBacteria" id="SHG86350">
        <property type="protein sequence ID" value="SHG86350"/>
        <property type="gene ID" value="SAMN05444003_1271"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006439">
        <property type="entry name" value="HAD-SF_hydro_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041492">
        <property type="entry name" value="HAD_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023198">
        <property type="entry name" value="PGP-like_dom2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13419">
        <property type="entry name" value="HAD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00413">
        <property type="entry name" value="HADHALOGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01549">
        <property type="entry name" value="HAD-SF-IA-v1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01509">
        <property type="entry name" value="HAD-SF-IA-v3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG86350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="237" mass="25282" checksum="CB7095B984EEAA9B" modified="2017-03-15" version="1">MSDRSNQIKGVIFDKDGTLFDFNATWGAWAETMIAAETRGDSVLKQRLADRLDYDLENKVFRPGSIVIAETVEVTADAILEVLKSDDKSGLIKRMNDAATQVPQIEATPLGAFVAELKELGLKIGVATNDAEGPARSHLSRAGVEQAFDFIAGFDSGYGGKPAPGQLLGFCEQEGLQPDECVMVGDSTHDLDAGRAAGMICVGVLTGPAPEEELAPFADVVLTSIAQLPDWLRTGRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NAX5</accession>
    <name>A0A1M5NAX5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">8-oxo-dGTP pyrophosphatase MutT, NUDIX family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1290</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86680.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899993.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1290"/>
    <dbReference type="EnsemblBacteria" id="SHG86680">
        <property type="protein sequence ID" value="SHG86680"/>
        <property type="gene ID" value="SAMN05444003_1290"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="1">
        <location>
            <begin position="28"/>
            <end position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG86680.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="165" mass="18830" checksum="03F02102A143DCD1" modified="2017-03-15" version="1">MAQAKSKDQKTKKRGQLPIKLRVGGKTDVRTQFAALCYRYEGEKLKICMVTSRRSGRWILPKGWPMHKQTPAEAAAQEAWEEAGVTGKAIDRCLGVYSYVKPLSENPAPVVVMIYPVSVDQIHDKWPEQKERKRKWVSPKKAAKKLQEPELRRIVSTFDPALLSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NB61</accession>
    <name>A0A1M5NB61_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1297</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900000.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1297"/>
    <dbReference type="EnsemblBacteria" id="SHG86794">
        <property type="protein sequence ID" value="SHG86794"/>
        <property type="gene ID" value="SAMN05444003_1297"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016646">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002563">
        <property type="entry name" value="Flavin_Rdtase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01613">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00903">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavin_Reduct" evidence="1">
        <location>
            <begin position="18"/>
            <end position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG86794.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="202" mass="22033" checksum="70B236F3786E217D" modified="2017-03-15" version="1">MFYRPEDGHGLPHNPFNAVVTPRPIGWISTRGADGSENLAPYSFFNAVAYEPPQVMFASTSAKPDRDGTKDTVANITETGEFAVNIVSFEMANAMNMTSGPWEKDIDEFEKASLTKAACSEIGCSYVDGAPAVLECKLTQITTLPGEANRVVFGEVVGVHLRDDCLVDGKFDVTKFHPLARLGYRDYTKVQDLFSLSRPGDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NF43</accession>
    <name>A0A1M5NF43_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1374</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88057.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1374"/>
    <dbReference type="EnsemblBacteria" id="SHG88057">
        <property type="protein sequence ID" value="SHG88057"/>
        <property type="gene ID" value="SAMN05444003_1374"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="1">
        <location>
            <begin position="178"/>
            <end position="277"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG88057.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="279" mass="30561" checksum="1A064BE6C385E965" modified="2017-03-15" version="1">MSCFLGPNVSLHIEHANQALQQTVVGAPDAYSIGVVLNEDTYFRANGQNIGCEDIFIVPPGCTLHLRSPEDGMILAVIVSTKTFERAFSVAPAVADWLLSLRDIVACCRAPTFAQRLRNDAYNALKTNALDSRFGQNQTLLGEILVNSLVSSLILEWGNGVEFLGAKLPRSFSRFLAIQKHTSGATANTIDIAAMSEELSLSRRSIQYAYAQEGTLGFGAYQRLLRLHAARRSLSNPANTDKSIGDIAAEFGFLNWSHFGEQYLTAFGERPSDTRSRLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NJH0</accession>
    <name>A0A1M5NJH0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1454</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89658.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900137.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG89658">
        <property type="protein sequence ID" value="SHG89658"/>
        <property type="gene ID" value="SAMN05444003_1454"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG89658.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="72" mass="7797" checksum="49BB77B85A4CA106" modified="2017-03-15" version="1">MGHKWILDVLTDLRSFAQDNDLQLLTDQLAQTTKVASVEIAATSEEKSLVPNGDSQHNRALFTGVGAQKGLC</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NLV0</accession>
    <name>A0A1M5NLV0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF45 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1487</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90447.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900166.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1487"/>
    <dbReference type="EnsemblBacteria" id="SHG90447">
        <property type="protein sequence ID" value="SHG90447"/>
        <property type="gene ID" value="SAMN05444003_1487"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002725">
        <property type="entry name" value="YgjP-like_metallopeptidase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01863">
        <property type="entry name" value="DUF45"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF45" evidence="1">
        <location>
            <begin position="23"/>
            <end position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01863"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG90447.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="230" mass="25837" checksum="C7C3C8ABB691F107" modified="2017-03-15" version="1">MGRQFSIGNPPIAVNVKTSARARRLSLRVSRLDGAVSLTVPKYSSDREAMAFLQEREEWLRKHLGDVMPKASVQIGGSVMFGGVETPIVAAEVRRARFEDGVFYVPDDASQSGVRLKALLKLKARDALAVASDHYAAELGRRYTRISLRDTRSRWGSCSSQGVLMYSWRLIMAPVDVLNYVAAHEASHLVEMNHSAAFWETVAGLMPDYEVHRRWLRENGDSLHRYDFGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NN10</accession>
    <name>A0A1M5NN10_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase</fullName>
            <shortName evidence="1">PRPn C-P lyase</shortName>
            <ecNumber evidence="1">4.7.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1510</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the breakage of the C-P bond in alpha-D-ribose 1-methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>AH2 + alpha-D-ribose 1-methylphosphonate 5-phosphate + S-adenosyl-L-methionine = 5'-deoxyadenosine + A + alpha-D-ribose 1,2-cyclic phosphate 5-phosphate + H(+) + L-methionine + methane</text>
            <dbReference type="Rhea" id="RHEA:34707"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16183"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:68686"/>
            <dbReference type="ChEBI" id="CHEBI:68687"/>
            <dbReference type="EC" id="4.7.1.1"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the PhnJ family.</text>
    </comment>
    <dbReference type="EC" id="4.7.1.1" evidence="1"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90951.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900184.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1510"/>
    <dbReference type="EnsemblBacteria" id="SHG90951">
        <property type="protein sequence ID" value="SHG90951"/>
        <property type="gene ID" value="SAMN05444003_1510"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098848">
        <property type="term" value="F:alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019700">
        <property type="term" value="P:organic phosphonate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010306">
        <property type="entry name" value="PhnJ"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06007">
        <property type="entry name" value="PhnJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF011468">
        <property type="entry name" value="PhnJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00379">
        <property type="entry name" value="Phosphonate_metabolism_(PhnJ)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="1" id="KW-0408">Iron</keyword>
    <keyword evidence="1" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1 2" id="KW-0456">Lyase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR011468"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG90951.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="291" mass="32373" checksum="8FE2AA1F5CC18D25" modified="2017-03-15" version="1">MSESAYNFAYLDEQTKRMIRRAILKGLAIPGYQVPFASREMPMPYGWGTGGVQVSAAVLTPEDTFKVIDQGADDTTNAVSIRTFFERTADVETTTETSAASVIQTRHRIPEEPLTEDQILVYQVPIPEPLRFLEPRESETRKMHSLEEYGLMHVKLYEDISRHGHIATSYAYPVKVEGRYVMDPSPIPKFDNPKLGQMAAVQLFGAGREQRIYALPPYTDVVSLDFDDHPFEASKADQVCGLCGAEDSYLDEVIIDDQGGRLFCCSDTDYCTSRRAAGHQGPAFPGSEVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NNG4</accession>
    <name>A0A1M5NNG4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1515</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91072.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900189.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1515"/>
    <dbReference type="EnsemblBacteria" id="SHG91072">
        <property type="protein sequence ID" value="SHG91072"/>
        <property type="gene ID" value="SAMN05444003_1515"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019634">
        <property type="term" value="P:organic phosphonate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015716">
        <property type="term" value="P:organic phosphonate transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009609">
        <property type="entry name" value="Phosphonate_metab_PhnG"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06754">
        <property type="entry name" value="PhnG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03293">
        <property type="entry name" value="PhnG_redo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG91072.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="151" mass="16119" checksum="94C4D7B94D93364A" modified="2017-03-15" version="1">MKDTFEEENPRKRWMGLLAKAPAGRVSALLDACIARPSFEWLRAPEIGSTMVQARAGGTGAPFNLGEMSVTRCALTLESGEVGHAYIQGRRKADAEAAALVDALMQTDAAEQVRTAILEPLAAEAAARRAARSSKAAATKVDFFTLVRGED</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-09-29" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NT42</accession>
    <name>A0A1M5NT42_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">2-hydroxychromene-2-carboxylate isomerase</fullName>
            <ecNumber evidence="1">5.99.1.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1578</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>2-hydroxychromene-2-carboxylate = (3E)-4-(2-hydroxyphenyl)-2-oxobut-3-enoate</text>
            <dbReference type="Rhea" id="RHEA:27401"/>
            <dbReference type="ChEBI" id="CHEBI:59350"/>
            <dbReference type="ChEBI" id="CHEBI:59353"/>
            <dbReference type="EC" id="5.99.1.4"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the GST superfamily. NadH family.</text>
    </comment>
    <dbReference type="EC" id="5.99.1.4" evidence="1"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG92618.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900246.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG92618">
        <property type="protein sequence ID" value="SHG92618"/>
        <property type="gene ID" value="SAMN05444003_1578"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018845">
        <property type="term" value="F:2-hydroxychromene-2-carboxylate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901170">
        <property type="term" value="P:naphthalene catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03022">
        <property type="entry name" value="DsbA_HCCA_Iso"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001853">
        <property type="entry name" value="DSBA-like_thioredoxin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014440">
        <property type="entry name" value="HCCAis_GSTk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044087">
        <property type="entry name" value="NahD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01323">
        <property type="entry name" value="DSBA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006386">
        <property type="entry name" value="HCCAis_GSTk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DSBA" evidence="3">
        <location>
            <begin position="4"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="2">
        <location>
            <position position="12"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR006386"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR006386-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG92618.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="199" mass="21849" checksum="2C08ED43D8E858C2" modified="2017-03-15" version="1">MAHVDYFFSPISPFTYLTGTRLEDMAKAHGATITYKPLDIMGLFGRTGGVPPKDRHPNRQEYRLQELRRRAALAGMPINIKPMFWPTNAAPASYAIIAAQADGSGDVGKLVNRLTACCWAEEKDISQDDVIRACLTESGFDADLADKGMMASADTFAANLEEAVNRGAFGAPFYITDADERFWGQDRLDDLEAHLAGKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NXF9</accession>
    <name>A0A1M5NXF9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1648</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG94256.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG94256">
        <property type="protein sequence ID" value="SHG94256"/>
        <property type="gene ID" value="SAMN05444003_1648"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004803">
        <property type="term" value="F:transposase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002514">
        <property type="entry name" value="Transposase_8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010921">
        <property type="entry name" value="Trp_repressor/repl_initiator"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01527">
        <property type="entry name" value="HTH_Tnp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48295">
        <property type="entry name" value="SSF48295"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG94256.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="124" mass="13879" checksum="A4DF1020AEE609F0" modified="2017-03-15" version="1">MNKKSGTSKDAADKLVKNIRRKTRRLHATEEKIRIVLAGLQGEESIAALCRREGISESLYYSWSKEFLEAGKQRLAGDTARQATSPEVKELRSESAALKEVVADLTLENRLLKKSILGDGEYEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PJW4</accession>
    <name>A0A1M5PJW4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Regulatory protein, luxR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1681</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH01977.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900502.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1681"/>
    <dbReference type="EnsemblBacteria" id="SHH01977">
        <property type="protein sequence ID" value="SHH01977"/>
        <property type="gene ID" value="SAMN05444003_1681"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="51"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="101"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00421"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH01977.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="168" mass="18156" checksum="EFB8F8FF7F0BF93D" modified="2017-03-15" version="1">MPSSRHGSSSQKTFLIALLIVQIACAALYLINLLSSITGIGVLSWAVHEFIELGAALGLLLGVILGAITLRRTLQRNQIVEDQLKAASGAFMDLLNERFEEWALTPAERDVALFSIKGLSIQEIAGVRDVSEGTIKAQTNAIYRKAGVSGRPQLLSLFVDELIELPQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PK78</accession>
    <name>A0A1M5PK78_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1688</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02110.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900507.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH02110">
        <property type="protein sequence ID" value="SHH02110"/>
        <property type="gene ID" value="SAMN05444003_1688"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012341452" evidence="1">
        <location>
            <begin position="21"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH02110.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="115" mass="12356" checksum="C793D032FDC1848D" modified="2017-03-15" version="1">MKKTILATTIAILAATAVSAQDMFARMEADVDQNSSVIVFEPLTASADGYVAVFDNHKDEVGRLLGVASVREGANSETRVVLGHPVRQDVIAFLFTGDDFMNPDNAVDSIKIDVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PMJ8</accession>
    <name>A0A1M5PMJ8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1731</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02941.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH02941">
        <property type="protein sequence ID" value="SHH02941"/>
        <property type="gene ID" value="SAMN05444003_1731"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH02941.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="155" mass="16915" checksum="3EBD8FEDAF743319" modified="2017-03-15" version="1">MELARRVPDVIWDLIRIASLSLIASSAVAWEYSPTPICKLSYEGESGSVIVTYDPMLGDYAISLTRANGLWPNAPVFGILFAGPRQIQIGTDRHTLSDDQRTITATDKGFGNVLDGLEFNNFAIAQAGDELFRFDLSDAAEPVRAFRNCGAELTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PPD3</accession>
    <name>A0A1M5PPD3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">5-oxoprolinase (ATP-hydrolysing)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1760</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the oxoprolinase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03556.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900566.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1760"/>
    <dbReference type="EnsemblBacteria" id="SHH03556">
        <property type="protein sequence ID" value="SHH03556"/>
        <property type="gene ID" value="SAMN05444003_1760"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008040">
        <property type="entry name" value="Hydant_A_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002821">
        <property type="entry name" value="Hydantoinase_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003692">
        <property type="entry name" value="Hydantoinase_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045079">
        <property type="entry name" value="Oxoprolinase_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11365">
        <property type="entry name" value="PTHR11365"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05378">
        <property type="entry name" value="Hydant_A_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01968">
        <property type="entry name" value="Hydantoinase_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02538">
        <property type="entry name" value="Hydantoinase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hydant_A_N" evidence="4">
        <location>
            <begin position="8"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="domain" description="Hydantoinase_A" evidence="2">
        <location>
            <begin position="203"/>
            <end position="495"/>
        </location>
    </feature>
    <feature type="domain" description="Hydantoinase_B" evidence="3">
        <location>
            <begin position="687"/>
            <end position="1190"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010403"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF05378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH03556.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="1191" mass="127070" checksum="DBF0F0C84A8C9787" modified="2017-03-15" version="1">MTGKKWEFWIDRGGTFTDIVARRPDGGIETHKLLSENPERYRDAAVQGIKELMQTKTPSEGSIRAVKMGTTVATNALLERKGEDVLLLITKGFRDLLVIGYQNRPNLFDLEIKRPARLYQDVEEVAERLTADGEVLIDLDEDGARAALQSGFDRGLRSVAIALLHAYLNPVHELRVAEIAEEIGFTQISTSHGVSRLAKLVGRGDTTVVDAYLSPILRRYVEQVAGALDVGKVCERLLFMQSNGGLTDANRFQGKDAVLSGPAGGIVGMVKTAEIAGFDKLIGFDMGGTSTDVSHYAGTYERSFETEVAGVRMRAPMMDIHTVAAGGGSICQFRDGRLQVGPESAGADPGPACYRRGGPLTVTDCNVMLGKLSPEHFPRVFGPNGDLPLDTDAVRARFEELAAEIAAETGDPIREPEDLARGFLRIAVDNMANAIKKISVERGHDVTDYTLQCFGGAGGQHACLVADALGMRRVLIHPYAGVLSAFGMGLAEIRALREAQVDAPIEELATAETALVRVATAARAEIEDQGVANVTIVSRAQLRYDGSHQPLEVPFGDVSDMKNAFEAAHKQRFGFISPERAIVFEMVSAEAIGGTPDYTAPAVASEDDAKPFAEVSIAYETSENAQLFQREELAIGATVSGPAIILEPTGTNLVEPGWEATVDVHGNLILNRIAEAPRPPAAGTKADPVVLEVMSNLFMSVADQMGATLANTSWSVNIKERLDFSCAIFDARGDLVANAPHVPVHLGSMSDSIKTVMRLNPDVAEGDAYMLNSPYNGGTHLPDVTVVTPVFVDGTPAFWLGSRGHHADIGGRTPGSGPPDSTHIDEEGVLIDNVQLVRGGTLLEDQARAVLASGKYPCRNIDQNMADLKAQVAANETGRQALLKVCEAYGGDVVTAYMGHVQDNAAESVARVIEGLSDGRYSYPMDEGQVIEVAVSVDKEARTATVDFTGTAAQHSGNYNAPKAVCRAVVLYVFRTLVGTNIPLNEGCLRPINIIVPEGSMLNPTYPAAVIAGNTEVSQAACNALIGALGVMACSQATMNNFIWGNDSFQNYETIAGGTGAGPGFDGCDAVQTHMTNTRMTDPEILEKRFPVRLDTFGIRDGSGGAGQWRGGHGSYREMTFLEPVTVTTLCSHRVVPPYGVNGGASGQVGHNWIRLPDGTTRDLRGNDEVNLPAGGTFILESPGGGGWGQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PRB0</accession>
    <name>A0A1M5PRB0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Probable membrane transporter protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_1790</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the 4-toluene sulfonate uptake permease (TSUP) (TC 2.A.102) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04126.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900590.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1790"/>
    <dbReference type="EnsemblBacteria" id="SHH04126">
        <property type="protein sequence ID" value="SHH04126"/>
        <property type="gene ID" value="SAMN05444003_1790"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002781">
        <property type="entry name" value="TM_pro_TauE-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01925">
        <property type="entry name" value="TauE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="7"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="48"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="78"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="103"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="171"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="203"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="233"/>
            <end position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363041"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH04126.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="252" mass="27473" checksum="A1ECE3021A3475DE" modified="2017-03-15" version="1">MFASFDLWASLPLFAVIFLTAGVIKGTLGIGLPTVAVGLMSQFFPPHLAIALVVFPLLTTNLWQALRERVGLDTVKTYWRLMAALAGSLWITTFFVVQTSPDVLLGVIGFVIAVFAITSLVKSTPELPERFDRLGQIVAGTTAGILGGLTSIWGPPLVTYLLARRVERDEFVKAAGLFLFVGGLPLMVGFWQAGLFRGETAQVSAVMVIPAVLGFTIGEAMRRRMSAETFRTALLWMFLLMGLNLLRRAFFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PXF5</accession>
    <name>A0A1M5PXF5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">NlpC/P60 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1900</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase C40 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900686.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1900"/>
    <dbReference type="EnsemblBacteria" id="SHH06350">
        <property type="protein sequence ID" value="SHH06350"/>
        <property type="gene ID" value="SAMN05444003_1900"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000064">
        <property type="entry name" value="NLP_P60_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041382">
        <property type="entry name" value="SH3_16"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00877">
        <property type="entry name" value="NLPC_P60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18348">
        <property type="entry name" value="SH3_16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="SSF54001"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51935">
        <property type="entry name" value="NLPC_P60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NlpC/P60" evidence="3">
        <location>
            <begin position="150"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007074"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH06350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="274" mass="29858" checksum="B7D5BAFFEEF724DE" modified="2017-03-15" version="1">MTDRRLTPANDRVAKRGMANPPDGVILTGGTPEQVITEVADLCAAPNGARDRQLLRGEKILTLDVHKGWAFIECATGYVGYVGEAQVSEYIGKTHFVCTAATHGYEAEDLKGSTVSSLPFRAGVTVLDERRKYFETDAGFIPKAHLRPLDRPLTDPVAAAQLFFGVPYLWGGNSTRGVDCSGLIAEAFTACGLVVPADSDLQRDHFGTHLASDSKPQRGDLMFWNGHVGIMVDEDVMLHANAHHMACRYEPLEQAKLRIEAQGDGQMIAHKRIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q137</accession>
    <name>A0A1M5Q137_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1969</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07632.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1969"/>
    <dbReference type="EnsemblBacteria" id="SHH07632">
        <property type="protein sequence ID" value="SHH07632"/>
        <property type="gene ID" value="SAMN05444003_1969"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH07632.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="53" mass="5933" checksum="DB08CBD05B3F7A4C" modified="2017-03-15" version="1">MLAKIIFLFMAFMAVLAIFGKWRFPGQDKLEAAKCKSCGRYRIGKGSCRCGRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q2L9</accession>
    <name>A0A1M5Q2L9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Chromosome partitioning ATPase, Mrp family, contains Fe-S cluster</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1973</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07713.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900745.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1973"/>
    <dbReference type="EnsemblBacteria" id="SHH07713">
        <property type="protein sequence ID" value="SHH07713"/>
        <property type="gene ID" value="SAMN05444003_1973"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002586">
        <property type="entry name" value="CobQ/CobB/MinD/ParA_Nub-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01656">
        <property type="entry name" value="CbiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CbiA" evidence="2">
        <location>
            <begin position="91"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH07713.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="271" mass="30252" checksum="DDA6D7539D44D5C5" modified="2017-03-15" version="1">MEKLQAALATARQNRTGKAPERRLTEDLARRKQQRSAGSVVWSQLEEFHPPADKLREHRVVTQTASSAATPFDILRTKILLQMQQNGWTRLAITSPMPDSGKTTTACNLALGLARQKELRSMLFDMDLRDPSVNQFFEKNPRNSIGSLLEGDVSFEEQALRIGDNLAISMASSPESDPSRILLSEQATTVLDEVQQRFHPDVMIFDLPSVLVNDDTRAFLKNVDCALIISRANATKYSQFDICEREIAEHTNVLGVVLNACRHGRGSTDFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q4H1</accession>
    <name>A0A1M5Q4H1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Threonine/homoserine efflux transporter RhtA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2023</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08629.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2023"/>
    <dbReference type="EnsemblBacteria" id="SHH08629">
        <property type="protein sequence ID" value="SHH08629"/>
        <property type="gene ID" value="SAMN05444003_2023"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="34"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="66"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="90"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="117"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="140"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="172"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="196"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="227"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="255"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="7"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="142"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH08629.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="278" mass="29747" checksum="BC560C65E4A4F689" modified="2017-03-15" version="1">MWQVAAMVVGAMFLIVGGDIAGTILTREGVSPVFVAWSRFAVAAVVLAPFCGVALREVPAFLDWRLMVRTLLIVCGIFCILTALQTEAIANVFGAFFVSPIFAFVLSVVLFKERAGWMRAVLLLVSFGGVLIVVRPGFGMTIGLAFALAAGLFHGSYLVATKWLADQYRPRFLLLSQLLIGAVFLAPFGIGDMPNLSWPVLGLVMVSALGSAFGNLLIVLASRIADASLIAPLIYSQLIHAAFLGWAVFGEWPDRQSLIGLSIILVSGFATLILAKRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q502</accession>
    <name>A0A1M5Q502_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Intrinsic membrane protein PufX</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2060</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09347.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900816.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2060"/>
    <dbReference type="EnsemblBacteria" id="SHH09347">
        <property type="protein sequence ID" value="SHH09347"/>
        <property type="gene ID" value="SAMN05444003_2060"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020169">
        <property type="entry name" value="Intrinsic_membrane_PufX"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11511">
        <property type="entry name" value="RhodobacterPufX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="27"/>
            <end position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH09347.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="77" mass="8269" checksum="B863B30AE70F310D" modified="2017-03-15" version="1">MEDDNILNLEGRTRLSADITLLMLKGAGYAAVLVLAIWLVIAVIAGIGRALPEDSRNTPDPINRSSLELLETPINIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q5F1</accession>
    <name>A0A1M5Q5F1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 19">Reaction center protein M chain</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="17 19">Photosynthetic reaction center M subunit</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="20" type="ORF">SAMN05444003_2061</name>
    </gene>
    <organism evidence="20 21">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="20 21" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20 21">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 19">The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="19">Reaction center is composed of four bacteriochlorophylls, two bacteriopheophytins, two ubiquinones, one iron, and highly hydrophobic polypeptide chains.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Reaction center is composed of four bacteriochlorophylls, two bacteriopheophytins, two ubiquinones, one iron, and three highly hydrophobic polypeptide chains (designated L, M, and H).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3 19">Cellular chromatophore membrane</location>
            <topology evidence="3 19">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 18">Belongs to the reaction center PufL/M/PsbA/D family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09364.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900817.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2061"/>
    <dbReference type="EnsemblBacteria" id="SHH09364">
        <property type="protein sequence ID" value="SHH09364"/>
        <property type="gene ID" value="SAMN05444003_2061"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030077">
        <property type="term" value="C:plasma membrane light-harvesting complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042717">
        <property type="term" value="C:plasma membrane-derived chromatophore membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042314">
        <property type="term" value="F:bacteriochlorophyll binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045156">
        <property type="term" value="F:electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009772">
        <property type="term" value="P:photosynthetic electron transport in photosystem II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.85.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036854">
        <property type="entry name" value="Photo_II_D1/D2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000484">
        <property type="entry name" value="Photo_RC_L/M"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005781">
        <property type="entry name" value="Photo_RC_M"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00124">
        <property type="entry name" value="Photo_RC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00256">
        <property type="entry name" value="REACTNCENTRE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81483">
        <property type="entry name" value="SSF81483"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01115">
        <property type="entry name" value="pufM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00244">
        <property type="entry name" value="REACTION_CENTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13 19" id="KW-0076">Bacteriochlorophyll</keyword>
    <keyword evidence="8 19" id="KW-0148">Chlorophyll</keyword>
    <keyword evidence="15 19" id="KW-0157">Chromophore</keyword>
    <keyword evidence="19" id="KW-0249">Electron transport</keyword>
    <keyword evidence="19" id="KW-0408">Iron</keyword>
    <keyword evidence="12 19" id="KW-0460">Magnesium</keyword>
    <keyword evidence="16 19" id="KW-0472">Membrane</keyword>
    <keyword evidence="11 19" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9 19" id="KW-0602">Photosynthesis</keyword>
    <keyword evidence="7 19" id="KW-0674">Reaction center</keyword>
    <keyword evidence="21" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10 19" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="14 19" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="19" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="50"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="111"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="144"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="200"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="265"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002611"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004548"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00008204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00018761"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022469"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00022991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00031893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="RuleBase" id="RU004331"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="RuleBase" id="RU364137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="EMBL" id="SHH09364.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="304" mass="34202" checksum="15FF785304EB6E1B" modified="2017-03-15" version="1">MAEYQNIFTQVQVQGPAEMGVNEAEFRTKSASFSKLFGWFGNAQLGPVHLGTFGVVSLATGLMWFFIVGINFWIQAGWSPGVFLRDLFWFSLEPPAPEYGLGMAPLEEGGWWLISSFFLLVSVCSWWIRTYLRAEELGMGKHVSWAFASAIWLFLVLGLIRPILMGSWSEAVPYGVFSHLDWTNLFSITHGNLFYNPFHALSIAFLYGSALLFAMHGATILAVSRFGGEREIEQIVDRGTASERAALFWRWTMGFNATMEGIHRWAWWFAVLTTLTGGIGILLSGTVVDNWYVWAQQHGFAPLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q6U1</accession>
    <name>A0A1M5Q6U1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Chlorophyllide a reductase subunit Y</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_2067</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Porphyrin-containing compound metabolism; bacteriochlorophyll biosynthesis.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09479.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900823.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2067"/>
    <dbReference type="EnsemblBacteria" id="SHH09479">
        <property type="protein sequence ID" value="SHH09479"/>
        <property type="gene ID" value="SAMN05444003_2067"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00669"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016731">
        <property type="term" value="F:oxidoreductase activity, acting on iron-sulfur proteins as donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030494">
        <property type="term" value="P:bacteriochlorophyll biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015979">
        <property type="term" value="P:photosynthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010245">
        <property type="entry name" value="BchY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000510">
        <property type="entry name" value="Nase/OxRdtase_comp1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016209">
        <property type="entry name" value="Protochlorophyllide_Rdtase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00148">
        <property type="entry name" value="Oxidored_nitro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000163">
        <property type="entry name" value="PCP_ChlB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02015">
        <property type="entry name" value="BchY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0077">Bacteriochlorophyll biosynthesis</keyword>
    <keyword evidence="4" id="KW-0149">Chlorophyll biosynthesis</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2" id="KW-0602">Photosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="94"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="domain" description="Oxidored_nitro" evidence="7">
        <location>
            <begin position="79"/>
            <end position="469"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004800"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00148"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH09479.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="526" mass="55394" checksum="168C6E2EB222E449" modified="2017-03-15" version="1">MTTREGFEVGYDASGEIQIIEGVTPEASEVVQETALDGGCTAGAATMEAAARKAGKSDILDQFAKDYPQGPHDQPQSMCPAFGSLRVGLRMKRVATVLSGSACCVYGLTFVSHFYGARRSVGYVPFNSETLVTGQLYEDIRDSVHEMADPDRYDAIVVTNLCVPTASGVPLRLLPKEINGVRIVGIDVPGFGVPTHAEAKDVLAAAMLNYAREEIAAGPVQAPVGGKSDRPTVALLGEMFPADPMMIGAMLGPLGLAAGPVVPTREWRELYAALDCGAAAAIHPFYTATVREFDAAGRPVVGSAPVGYDGTADWLARIGDTFNVPTAQVAGAQNAFLPKIKEALATVPINGTITLSGYEGSELLVARLLIESGADLPYVGTACPKTPWSAADAEWLESKGVKVKFRTSLEDDISAVDAIKPDLAIGTTPVVQHAKEAGIPSLYFTNLISARPLMGPAGAGSLGQVVNAAIAGKEKMDAMRTFFEGVGNEDTAGVWEGAPNVREDFRAQHQKKLDKAKRAAEAARMI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q7N0</accession>
    <name>A0A1M5Q7N0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, MarR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2093</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH10002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2093"/>
    <dbReference type="EnsemblBacteria" id="SHH10002">
        <property type="protein sequence ID" value="SHH10002"/>
        <property type="gene ID" value="SAMN05444003_2093"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023187">
        <property type="entry name" value="Tscrpt_reg_MarR-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12802">
        <property type="entry name" value="MarR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01117">
        <property type="entry name" value="HTH_MARR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="18"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH10002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="168" mass="18866" checksum="79169D98E63F673F" modified="2017-03-15" version="1">MGQPNQSQTGQSLLFLTDEQLRVGIEAMFFAYRGFTADPDRILAEKGYGRAHHRAIHFIHRSPGTTVNNLLAILGVTKQSLNRVLRTLIEDGLVSNTVGQKDRRERHLHLTEAGETLERTLSDAQRARMRAAFRSAGPEAVAGFRTVLEAMMDEDMRRNYATLKEGTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QJC0</accession>
    <name>A0A1M5QJC0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PTS IIA-like nitrogen-regulatory protein PtsN</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2156</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14195.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900970.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2156"/>
    <dbReference type="EnsemblBacteria" id="SHH14195">
        <property type="protein sequence ID" value="SHH14195"/>
        <property type="gene ID" value="SAMN05444003_2156"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00211">
        <property type="entry name" value="PTS_IIA_fru"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016152">
        <property type="entry name" value="PTrfase/Anion_transptr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002178">
        <property type="entry name" value="PTS_EIIA_type-2_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00359">
        <property type="entry name" value="PTS_EIIA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55804">
        <property type="entry name" value="SSF55804"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51094">
        <property type="entry name" value="PTS_EIIA_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00372">
        <property type="entry name" value="PTS_EIIA_TYPE_2_HIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PTS EIIA type-2" evidence="1">
        <location>
            <begin position="5"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51094"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH14195.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="154" mass="16363" checksum="AB2CD96C8925F69B" modified="2017-03-15" version="1">MLMSDILDANAVKVLSGCTSKKRLFHDLGALAEGVHGLDPTVVIEALIERENLGPTAVGKGIALPHARFDGIDEVCGMFVRLEKPLEFDAADKQPVDLIFALLAPVNAGVQHLKALALVSRTMRNADICAKLRANSDVAALHTLLTATETNQAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QL55</accession>
    <name>A0A1M5QL55_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC-type polysaccharide/polyol phosphate export permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2164</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14363.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900981.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2164"/>
    <dbReference type="EnsemblBacteria" id="SHH14363">
        <property type="protein sequence ID" value="SHH14363"/>
        <property type="gene ID" value="SAMN05444003_2164"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="37"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="72"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="115"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="152"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="242"/>
            <end position="260"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH14363.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="273" mass="30379" checksum="72121AAB2BB4BE4D" modified="2017-03-15" version="1">MFQTSYNRSKTRSAFALLEIMYHTIVRDIRKGHRNAFIGLLLNMMQAIIFVVVFFAMFEILGMRDAAIRGDFLLYIMSGIFLFLTHTKAVSAVVGAEGPASPMMQHAPMNTAISITAAAISSLYTQVLSLLVILFIYHVAFTPVVIEDPVGAFGMLLLAWFTGVAVGMVFLALKPWLPELVGILTMLYMRANMIASGKMFVANSLPGSMLVLFDWNPLFHAIDQNRGFVFINYNPHFSSISYPLYVGLALILIGLMGEFYTRRHASLSWGAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QLM9</accession>
    <name>A0A1M5QLM9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">8-oxo-dGTP diphosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2177</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14630.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901001.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2177"/>
    <dbReference type="EnsemblBacteria" id="SHH14630">
        <property type="protein sequence ID" value="SHH14630"/>
        <property type="gene ID" value="SAMN05444003_2177"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008413">
        <property type="term" value="F:8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003561">
        <property type="entry name" value="Mutator_MutT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029119">
        <property type="entry name" value="MutY_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020476">
        <property type="entry name" value="Nudix_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020084">
        <property type="entry name" value="NUDIX_hydrolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14815">
        <property type="entry name" value="NUDIX_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00502">
        <property type="entry name" value="NUDIXFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00586">
        <property type="entry name" value="mutt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00893">
        <property type="entry name" value="NUDIX_BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="4">
        <location>
            <begin position="1"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="region of interest" description="8-oxo-dGTP binding" evidence="2">
        <location>
            <begin position="34"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="23"/>
        </location>
        <ligand>
            <name>8-oxo-dGTP</name>
            <dbReference type="ChEBI" id="CHEBI:77896"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="37"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="57"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR603561-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR603561-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH14630.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="132" mass="14800" checksum="6E501562BD580C5D" modified="2017-03-15" version="1">MKTVLVSAVALIDIDGRVLLAQRPEGKSMAGLWEFPGGKVEPGETPEIALIRELEEELGINTWESCLAPLTFASHSYDDFHLLMPLFACRKWEGTPQSREGQALKWVKANALKDYPMPEADIPLIPILRDWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QLY7</accession>
    <name>A0A1M5QLY7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Glutaredoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2194</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 2">Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the glutaredoxin family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14976.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901030.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2194"/>
    <dbReference type="EnsemblBacteria" id="SHH14976">
        <property type="protein sequence ID" value="SHH14976"/>
        <property type="gene ID" value="SAMN05444003_2194"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097573">
        <property type="term" value="F:glutathione oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045454">
        <property type="term" value="P:cell redox homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03418">
        <property type="entry name" value="GRX_GRXb_1_3_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002109">
        <property type="entry name" value="Glutaredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014025">
        <property type="entry name" value="Glutaredoxin_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011900">
        <property type="entry name" value="GRX_bact"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00462">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00160">
        <property type="entry name" value="GLUTAREDOXIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02181">
        <property type="entry name" value="GRX_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2" id="KW-0249">Electron transport</keyword>
    <keyword evidence="2" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Glutaredoxin" evidence="3">
        <location>
            <begin position="4"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002549"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU364065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH14976.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="85" mass="9381" checksum="B2520A7FA8A0428C" modified="2017-03-15" version="1">MARVEIYTKMTCGFCHAAKRLLKAKGVSFEETDILLKPKKRPEMIQRANGRSTVPQIFIDGKHVGGFDDLAAAESNGKLDKMLAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QQK2</accession>
    <name>A0A1M5QQK2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cysteine synthase A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2265</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16384.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901140.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2265"/>
    <dbReference type="EnsemblBacteria" id="SHH16384">
        <property type="protein sequence ID" value="SHH16384"/>
        <property type="gene ID" value="SAMN05444003_2265"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="PLP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="Trypto_synt_PLP_dependent"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="SSF53686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PALP" evidence="3">
        <location>
            <begin position="34"/>
            <end position="313"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH16384.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="346" mass="38663" checksum="1BDAECEA31B0CC43" modified="2017-03-15" version="1">MRRWVSKAVEKIEADYQRSADTHLFKLDIPTLKDIDIYLKDESTHPTGSLKHRLARSLFLYALCNGRISENTTIIEASSGSTAVSEAYFARMLGLKFIAVMPRNTAQSKINKITLFGGQCYFVDNATQMHDAATSLADQTGGYFMDQFMFAERATDWRGNNNIAESIFLQMEKETHPIPHTLVMSAGTGGTSATLGRYIRFRGHDTSLVVVDPENSVFYDSFTKKDLCLENNSSSKIEGIGRPKVEKSFQPHVIDSMIKVPDAASVATMLWLERRIGRRAGASTGTNLWGALQVAMEMRKEGLAGSVVSIMCDDGDRYLDTYYNAEWVRAVIGETQTYSEELEKLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QRR4</accession>
    <name>A0A1M5QRR4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Long-chain acyl-CoA synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2278</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901491.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2278"/>
    <dbReference type="EnsemblBacteria" id="SHH16638">
        <property type="protein sequence ID" value="SHH16638"/>
        <property type="gene ID" value="SAMN05444003_2278"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="17"/>
            <end position="470"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH16638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="649" mass="71730" checksum="315B0ADEC93E3D60" modified="2017-03-15" version="1">MGNTSSDLVTMPQLLVRNVARYGDKAAYREKEFGIWQSWTWAEASDEIHQIARGFVALGLKEGDSVAIIGRNRPVLYWSMIAAQMCGATPVPLYQDAVAEEMAYVLDHCGARIVIAADQEQVDKTIEVQETVKGIEQVVYVDGRGLRKYDHSTMHSMDDLKAMGKPEHQAELDARASRQNGDTTCVILYTSGTTGRPKGVVLSNSNIIETSKNSSDFDHLRADDDVLAYLPMGWVGDFIFSIGQAMWTGFCVNCPESGDTLHTDLREIGPTYYFAPPRVFETQLTNVMIRMEDSGRFKKWLFDHYMAHAKKVGPAILDGESVSPGDRLKYRLGNLFVYGPLKNTLGFSRVRVGYTAGEAIGPEIFDFYRSLGINLKQLYGQTEASVYITQQPDGEVRGDTVGVPSPGVELKIADSGEVFYRSPGVFQEYFKNADSTASTKDPEGWVATGDAGFIEEGSGHLRIIDRAKDVGKMADGSLFAPKYVENKLKFFPNILEAVVFGNGRDRCTAFLNIDLTAVGNWAERNNIAYSSYQELAGHPQVMDTLQAHVEEVNASVAEDPMLAGCQVHRFVVLHKQLDADDGELTRTQKVRRKIIEEKFEDLITALYDGSGSVFTETEVTYEDGRKGKISATLEIRDAAVVAPMAVAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QS74</accession>
    <name>A0A1M5QS74_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2286</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901171.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH16808">
        <property type="protein sequence ID" value="SHH16808"/>
        <property type="gene ID" value="SAMN05444003_2286"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH16808.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="220" mass="24850" checksum="30EF3B113EB1202D" modified="2017-03-15" version="1">MLKRSTIHLQEKLMQTWPGRALDPRGIVRISNESGEKHPIFWIFNSARTAEALAKFLGPDQPIVFTRSTTLMFSEFEARSKGAEELSRHALLYIKKEVDFTNLRIGTACEGNKLLSLICADLKESGAKIPALYLINCSLLLPALGLPALLIYGDEDLRYDPFCDPSRDAEYEASCKFSKFRRVVLPAKHARYFTPKNIRKGWENYEEFLSELSISAAASS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R266</accession>
    <name>A0A1M5R266_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Choloylglycine hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2455</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase C59 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH20271.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901433.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2455"/>
    <dbReference type="EnsemblBacteria" id="SHH20271">
        <property type="protein sequence ID" value="SHH20271"/>
        <property type="gene ID" value="SAMN05444003_2455"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029132">
        <property type="entry name" value="CBAH/NAAA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02275">
        <property type="entry name" value="CBAH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CBAH" evidence="3">
        <location>
            <begin position="2"/>
            <end position="324"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006625"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02275"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH20271.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="344" mass="37865" checksum="41D46BF643FBBE03" modified="2017-03-15" version="1">MCTGIRLKAQNGSIVYGRSMEWGAFDLNSNVCVIPKDYAFTGTTPEGTNGKEWKSEYGVLALDFLGTDWLADGLNEAGLAVGMFYHPDFADYPEYNADMASNTIAAMDIAGFLLTQFASIGEVKNALAGLQVVGVTQELLGTSDPAHWMVTDKTGASITIEYIDGKVSIFDNPLGVITNAPTYDWHMTNLRNYVNLSPVALPTRKVEDIDFAPLGAGSGMIGLPGDNTPPSRFVRAVAMTQTTRPMPNSDEAVYEALRILDNFNLPLGGAEGSDHEGNTANMRSSTIWTTVWNMEKQDLYFHTQHNRRVRLVSLKEMNFEGNEIKRITLDREKSQDIEDLSGHF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RDH9</accession>
    <name>A0A1M5RDH9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Lipoprotein signal peptidase</fullName>
            <ecNumber evidence="6">3.4.23.36</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Prolipoprotein signal peptidase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Signal peptidase II</fullName>
            <shortName evidence="6">SPase II</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">lspA</name>
        <name evidence="9" type="ORF">SAMN05444003_2527</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 7">This protein specifically catalyzes the removal of signal peptides from prolipoproteins.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6 7">
            <text>Release of signal peptides from bacterial membrane prolipoproteins. Hydrolyzes -Xaa-Yaa-Zaa-|-(S,diacylglyceryl)Cys-, in which Xaa is hydrophobic (preferably Leu), and Yaa (Ala or Ser) and Zaa (Gly or Ala) have small, neutral side chains.</text>
            <dbReference type="EC" id="3.4.23.36"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="6">Protein modification; lipoprotein biosynthesis (signal peptide cleavage).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 8">Belongs to the peptidase A8 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="3.4.23.36" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24354.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901627.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2527"/>
    <dbReference type="EnsemblBacteria" id="SHH24354">
        <property type="protein sequence ID" value="SHH24354"/>
        <property type="gene ID" value="SAMN05444003_2527"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00665"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00161">
        <property type="entry name" value="LspA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001872">
        <property type="entry name" value="Peptidase_A8"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33695">
        <property type="entry name" value="PTHR33695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01252">
        <property type="entry name" value="Peptidase_A8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00781">
        <property type="entry name" value="LIPOSIGPTASE"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00077">
        <property type="entry name" value="lspA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00855">
        <property type="entry name" value="SPASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6 7" id="KW-0064">Aspartyl protease</keyword>
    <keyword evidence="2 6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 6 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 7" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="65"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="90"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="127"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="117"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH24354.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="161" mass="17683" checksum="BE21878B4A59DF6A" modified="2017-03-15" version="1">MRLLYWTAFWVFAVDQLSKWLIVQWLDLPNLTEGRLTVVPGFVEFRMAWNRGVNFGLFSEFDMKWVLIAVALAITVGVLIWLHRSGATRMGYIAGGLLVGGALGNVIDRLVYGAVADFLNVTCCGIVNPYAFNVADIAIFVGAIGLAFAPDPKDASKPKKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RG09</accession>
    <name>A0A1M5RG09_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Carbohydrate ABC transporter substrate-binding protein, CUT1 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2572</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial solute-binding protein 1 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25287.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901692.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2572"/>
    <dbReference type="EnsemblBacteria" id="SHH25287">
        <property type="protein sequence ID" value="SHH25287"/>
        <property type="gene ID" value="SAMN05444003_2572"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006059">
        <property type="entry name" value="SBP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01547">
        <property type="entry name" value="SBP_bac_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0574">Periplasm</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013359379" evidence="4">
        <location>
            <begin position="22"/>
            <end position="409"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH25287.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="409" mass="43023" checksum="AEC6480B3BE4024A" modified="2017-03-15" version="1">MKLSTKLLSATAIVGASAVSAAELEVTHWWTSGGEAAAVAEFASAFNATEHTWIDGAIAGSGGTARPIIISRILGGDPMHATQLNHGRQAEELVEAGLMLDLTDVAEAEGWADVVNPSRLLDACTLDGKVYCVPVNIHSPQWLWLSHDAFAKAGVDVPADWFEFVDAAPALRDAGLVPLAMGQQSWQTSLAFGALMVAVGGTDLYIDVLTNKNADAAASEDMTKVWEAYAAARLLSEGSNVNDWNQATNLVITGQAGGQIHGDWAQGEFQVAEQVAGTDYTCLPGLGVNEIIATGGDAFYFPKQDDPAIEAAQKELASLMISQEVQVAFNLKKGSLPIRGDIDLSAANDCMQKGLAILAAGNVLPDGVNSFSADTAGQIDDLTVEFWNDTSISVEDAQARYVDIIASAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RI59</accession>
    <name>A0A1M5RI59_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Homocysteine S-methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2606</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="3">Binds 1 zinc ion per subunit.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25995.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901746.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2606"/>
    <dbReference type="EnsemblBacteria" id="SHH25995">
        <property type="protein sequence ID" value="SHH25995"/>
        <property type="gene ID" value="SAMN05444003_2606"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047150">
        <property type="term" value="F:betaine-homocysteine S-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009086">
        <property type="term" value="P:methionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017226">
        <property type="entry name" value="Betaine-hCys_S-MeTrfase_BHMT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003726">
        <property type="entry name" value="HCY_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036589">
        <property type="entry name" value="HCY_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02574">
        <property type="entry name" value="S-methyl_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037505">
        <property type="entry name" value="Betaine_HMT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82282">
        <property type="entry name" value="SSF82282"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50970">
        <property type="entry name" value="HCY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1 4 6" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4 6" id="KW-0808">Transferase</keyword>
    <keyword evidence="3 4" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Hcy-binding" evidence="5">
        <location>
            <begin position="1"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3 4">
        <location>
            <position position="199"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3 4">
        <location>
            <position position="272"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3 4">
        <location>
            <position position="273"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR037505-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00333"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH25995.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="290" mass="30809" checksum="CA69F2360B83C6D8" modified="2017-03-15" version="1">MITLLDGGMGQELVRLAGKATGMWSNQALFDRPEHVRQVHDAYFAAGADVATTNTYAVLPDRFEAYDVLDRLDEMTVRACELAVAARDAHGSGIIAGSMGPMGFSYQPDKAPPAAEAAEGYARLAKVQADFVDAHLLETMASVDQAKGGLMGASVTGKPVWIGLTVNDEDGTQLRSGEPLADLAPVLAEYQPAVIFLNCSMPEAINQGLPELAKLGDTFGAYANGFTKITDDFDHIGATVDQLTARTDLTPDAYADHAQGWADTGAIYIGGCCEVTPAHIKELARRFKGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RJZ9</accession>
    <name>A0A1M5RJZ9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Threonine/homoserine/homoserine lactone efflux protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2637</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26692.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901796.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH26692">
        <property type="protein sequence ID" value="SHH26692"/>
        <property type="gene ID" value="SAMN05444003_2637"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001123">
        <property type="entry name" value="LeuE-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30086">
        <property type="entry name" value="PTHR30086"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01810">
        <property type="entry name" value="LysE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="43"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="74"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="118"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="151"/>
            <end position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH26692.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="207" mass="21689" checksum="85426F02E4908BCC" modified="2017-03-15" version="1">MIDATFGFVLLAWALAGASPGPATLSIAGAAMQQGRISGLATASGVLAGSVTWGIAAAFGMSAIMLAHGRLVEIIRYIGAGYLLFLGLKAARSALQDKPMKIGTINEASVSRHFLKGFLIHITNPKAIFALGAMFAVVMPPGSGIQDILTALFLLFLVSAIVFLSYGLLFSTSGAIAIYVRLRRWIEGGFAAMFGYAGFKILTSRLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RK11</accession>
    <name>A0A1M5RK11_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">GTP pyrophosphokinase rsh</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">(p)ppGpp synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="2">ATP:GTP 3'-pyrophosphotransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_2634</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">In eubacteria ppGpp (guanosine 3'-diphosphate 5'-diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the relA/spoT family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26627.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901790.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2634"/>
    <dbReference type="EnsemblBacteria" id="SHH26627">
        <property type="protein sequence ID" value="SHH26627"/>
        <property type="gene ID" value="SAMN05444003_2634"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015969">
        <property type="term" value="P:guanosine tetraphosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd05399">
        <property type="entry name" value="NT_Rel-Spo_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01668">
        <property type="entry name" value="TGS_RSH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006674">
        <property type="entry name" value="HD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004811">
        <property type="entry name" value="RelA/Spo_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045600">
        <property type="entry name" value="RelA/SpoT_AH_RIS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007685">
        <property type="entry name" value="RelA_SpoT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004095">
        <property type="entry name" value="TGS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012676">
        <property type="entry name" value="TGS-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033655">
        <property type="entry name" value="TGS_RelA/SpoT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13291">
        <property type="entry name" value="ACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19296">
        <property type="entry name" value="DUF5913"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04607">
        <property type="entry name" value="RelA_SpoT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02824">
        <property type="entry name" value="TGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00471">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00954">
        <property type="entry name" value="RelA_SpoT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81271">
        <property type="entry name" value="SSF81271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00691">
        <property type="entry name" value="spoT_relA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51831">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51880">
        <property type="entry name" value="TGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0418">Kinase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HD" evidence="6">
        <location>
            <begin position="45"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="domain" description="TGS" evidence="7">
        <location>
            <begin position="382"/>
            <end position="447"/>
        </location>
    </feature>
    <feature type="domain" description="ACT" evidence="5">
        <location>
            <begin position="627"/>
            <end position="701"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00014315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00029754"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00032407"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51831"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH26627.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="710" mass="80388" checksum="582C2A40EE56B599" modified="2017-03-15" version="1">MTTADDLIALVRTYNPRTNEAMLADAYAFGEQMHDGQFRQSGEPYFTHPVAVAMLLAEQQMDDATLITALLHDTIEDTKASFSEVEKRFGREVADLVDGVTKLTNLQLNSAETKQAENFRKLFMATSRDLRVTLVKLADRLHNMRTIKAMRHEKQVQKSRETMDIYAPLAGRMGMQWMREELEDLAFRVLNPEARNSIIRRFITLQRETGDVVQKITADMRIELEKGHIQAEVFGRAKKPYSIWRKMEEKQQSFSRLSDIYGFRIITATEADCYRALGAIHQRWRAVPGRFKDYISQPKSNGYRSIHTTVSGRDGKRVEVQIRTREMHEVAETGVAAHWSYRNGERVENQFAVDPVHWIASLTERFEDDEDHGEFLEAVKLEMYTDQVFCFSPKGDVIKLPRGATPIDFAYAIHTRIGSACVGAKVDGIRVPLWTRLKNGQSIEIITAEGQTPQATWIDIAVTGRAKAAIRKSLREEDRGRFIRLGHELARVAFENVGKKVSDKALSTAAKTFALPSVDELLVRLGSAELSARDVVTSLYPKLADKHDDEIDSVRAVVGLPSDQTHRRARCCQPIPGERIVGITFRGQGVELHTIDCEALVQYEDQTERWVDLRWQEGHHKAVNNVTIDVAISNETGVLGRICSLIGEQGANISNLEFIDRKPDYYRLLVDVDLSDTEHLHRVMTALEAESAVSRVKRKQDPSLAGVKET</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RMS8</accession>
    <name>A0A1M5RMS8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Protein translocase subunit SecE</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">secE</name>
        <name evidence="8" type="ORF">SAMN05444003_2671</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Component of the Sec protein translocase complex. Heterotrimer consisting of SecY, SecE and SecG subunits. The heterotrimers can form oligomers, although 1 heterotrimer is thought to be able to translocate proteins. Interacts with the ribosome. Interacts with SecDF, and other proteins may be involved. Interacts with SecA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the SecE/SEC61-gamma family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH27479.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901848.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2671"/>
    <dbReference type="EnsemblBacteria" id="SHH27479">
        <property type="protein sequence ID" value="SHH27479"/>
        <property type="gene ID" value="SAMN05444003_2671"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008320">
        <property type="term" value="F:protein transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0065002">
        <property type="term" value="P:intracellular protein transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009306">
        <property type="term" value="P:protein secretion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006605">
        <property type="term" value="P:protein targeting"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043952">
        <property type="term" value="P:protein transport by the Sec complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.1030">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00422">
        <property type="entry name" value="SecE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005807">
        <property type="entry name" value="SecE_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038379">
        <property type="entry name" value="SecE_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001901">
        <property type="entry name" value="Translocase_SecE/Sec61-g"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33910">
        <property type="entry name" value="PTHR33910"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00584">
        <property type="entry name" value="SecE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00964">
        <property type="entry name" value="secE_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 7" id="KW-0653">Protein transport</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0811">Translocation</keyword>
    <keyword evidence="2 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1 7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="27"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00422"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH27479.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="64" mass="7106" checksum="D90EE6E2D0E7844D" modified="2017-03-15" version="1">MATNPVKFINETRAEISKVVWPTRREVVMTTIMVFIMAALTAVFFSLVDLIIRTGLAGVLGMFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RMU6</accession>
    <name>A0A1M5RMU6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6">Transcription termination/antitermination protein NusG</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">nusG</name>
        <name evidence="9" type="ORF">SAMN05444003_2672</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 6">Participates in transcription elongation, termination and antitermination.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 6">Belongs to the NusG family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH27499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901850.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2672"/>
    <dbReference type="EnsemblBacteria" id="SHH27499">
        <property type="protein sequence ID" value="SHH27499"/>
        <property type="gene ID" value="SAMN05444003_2672"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006354">
        <property type="term" value="P:DNA-templated transcription, elongation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006353">
        <property type="term" value="P:DNA-templated transcription, termination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032784">
        <property type="term" value="P:regulation of DNA-templated transcription, elongation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031564">
        <property type="term" value="P:transcription antitermination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.940">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00948">
        <property type="entry name" value="NusG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005824">
        <property type="entry name" value="KOW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006645">
        <property type="entry name" value="NGN_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036735">
        <property type="entry name" value="NGN_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043425">
        <property type="entry name" value="NusG-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014722">
        <property type="entry name" value="Rib_L2_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001062">
        <property type="entry name" value="Transcrpt_antiterm_NusG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015869">
        <property type="entry name" value="Transcrpt_antiterm_NusG_bac_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008991">
        <property type="entry name" value="Translation_prot_SH3-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30265">
        <property type="entry name" value="PTHR30265"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30265:SF2">
        <property type="entry name" value="PTHR30265:SF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00467">
        <property type="entry name" value="KOW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02357">
        <property type="entry name" value="NusG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00338">
        <property type="entry name" value="NUSGTNSCPFCT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00739">
        <property type="entry name" value="KOW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00738">
        <property type="entry name" value="NGN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50104">
        <property type="entry name" value="SSF50104"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82679">
        <property type="entry name" value="SSF82679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00922">
        <property type="entry name" value="nusG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01014">
        <property type="entry name" value="NUSG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 6" id="KW-0804">Transcription</keyword>
    <keyword evidence="2 5 6" id="KW-0889">Transcription antitermination</keyword>
    <keyword evidence="3 5 6" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="1 5 6" id="KW-0806">Transcription termination</keyword>
    <feature type="domain" description="NGN" evidence="7">
        <location>
            <begin position="2"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="domain" description="KOW" evidence="8">
        <location>
            <begin position="122"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00948"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00739"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH27499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="176" mass="20114" checksum="50028110922756C8" modified="2017-03-15" version="1">MAKRWYSVSVLSNFEKKIAETIRQKAEELGLSDQIDEVLVPTEEVIEVRRNKKVTAERRFMPGYVLVHMEMSDEGYHLINSINRVTGFLGPQGRPMPMRDAEVNAILNRVEEGQEAPRTLISFEVGEKVKVNDGPFEDFDGLVEEVDDENQRLKVTVSIFGRATPVELEYTQVTKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RUR2</accession>
    <name>A0A1M5RUR2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">NitT/TauT family transport system ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2704</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH29976.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901954.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2704"/>
    <dbReference type="EnsemblBacteria" id="SHH29976">
        <property type="protein sequence ID" value="SHH29976"/>
        <property type="gene ID" value="SAMN05444003_2704"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="7"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="43"/>
            <end position="50"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH29976.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="260" mass="28638" checksum="357DA618587AED64" modified="2017-03-15" version="1">MTSSLKISANDLSLTFQTNDGPVHALSDVNLDIHEGDFVSFIGPSGCGKTTFLRVIADLEQPTGGSITVNGVSPQEARLARAYGYVFQAAGLYPWRNIGGNIKLPLEIMGFSKSEQQQRVTRVLEMVDLAGFENKFPWQLSGGMQQRASIARALAFDADILLMDEPFGALDEIVRDHLNEQLLELWAKTNKTIGFVTHSIPEAVFLSTKIVVMSPRPGRVTDVIDSPLPKGRPLEIRDTPEFLEVAQRVREGLRAGHSYD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RXS1</accession>
    <name>A0A1M5RXS1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">30S ribosomal protein S16</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rpsP</name>
        <name evidence="5" type="ORF">SAMN05444003_2752</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the bacterial ribosomal protein bS16 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31046.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902024.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2752"/>
    <dbReference type="EnsemblBacteria" id="SHH31046">
        <property type="protein sequence ID" value="SHH31046"/>
        <property type="gene ID" value="SAMN05444003_2752"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00385">
        <property type="entry name" value="Ribosomal_S16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000307">
        <property type="entry name" value="Ribosomal_S16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023803">
        <property type="entry name" value="Ribosomal_S16_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12919">
        <property type="entry name" value="PTHR12919"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00886">
        <property type="entry name" value="Ribosomal_S16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54565">
        <property type="entry name" value="SSF54565"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00002">
        <property type="entry name" value="S16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="1 3 5" id="KW-0689">Ribosomal protein</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="66"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="78"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00385"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH31046.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="140" mass="15415" checksum="AB3BEDBA295CA905" modified="2017-03-15" version="1">MAMKIRLARGGSKKRPFYSIVAADSRMPRDGRFIEKLGTYNPMLPKDSEERVKMNMERVKYWLGEGAQPSDRVSRMLEAAGELPKKERNNPKKGTPGKAAQERAEEKAEKAKAAEEAAAAPAEEEAPAEEPAAEEAAAEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RYK3</accession>
    <name>A0A1M5RYK3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2768</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31432.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902049.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2768"/>
    <dbReference type="EnsemblBacteria" id="SHH31432">
        <property type="protein sequence ID" value="SHH31432"/>
        <property type="gene ID" value="SAMN05444003_2768"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003908">
        <property type="term" value="F:methylated-DNA-[protein]-cysteine S-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06445">
        <property type="entry name" value="ATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014048">
        <property type="entry name" value="MethylDNA_cys_MeTrfase_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036217">
        <property type="entry name" value="MethylDNA_cys_MeTrfase_DNAb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036631">
        <property type="entry name" value="MGMT_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01035">
        <property type="entry name" value="DNA_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46767">
        <property type="entry name" value="SSF46767"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53155">
        <property type="entry name" value="SSF53155"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00589">
        <property type="entry name" value="ogt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="1">
        <location>
            <begin position="13"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH31432.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="279" mass="30669" checksum="C3608B98AAD535A8" modified="2017-03-15" version="1">MEQNDSYHYQVIARAIELIDAHDSEPLSLTELARQMNMSPAHFQRLFTQWVGVSPKRYQQYLALGHAKSLLRDRFTTLETSNAVGLSGSSRLHDLFVRWEAMTPGDFAKGGSDLTINWGWFESPFGPALLMGTDKGICGLAFSAVTGEDEAMVDMTSRWPKANFVENPEAIRPWAEATLSLSGETRLHMIGAPLQLKVWEALLMIPPGHVTTYSEIAEAIGKPKAVRAVGTAVGRNPVSLLIPCHRALRKSGALGGYHWGLAVKRSLLAWESAREDAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RZB1</accession>
    <name>A0A1M5RZB1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Histidine triad (HIT) family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2775</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31576.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902060.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2775"/>
    <dbReference type="EnsemblBacteria" id="SHH31576">
        <property type="protein sequence ID" value="SHH31576"/>
        <property type="gene ID" value="SAMN05444003_2775"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.428.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019808">
        <property type="entry name" value="Histidine_triad_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001310">
        <property type="entry name" value="Histidine_triad_HIT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011146">
        <property type="entry name" value="HIT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036265">
        <property type="entry name" value="HIT-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23089">
        <property type="entry name" value="PTHR23089"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01230">
        <property type="entry name" value="HIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00332">
        <property type="entry name" value="HISTRIAD"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54197">
        <property type="entry name" value="SSF54197"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00892">
        <property type="entry name" value="HIT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51084">
        <property type="entry name" value="HIT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HIT" evidence="2">
        <location>
            <begin position="10"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Histidine triad motif" evidence="1">
        <location>
            <begin position="103"/>
            <end position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51084"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH31576.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="121" mass="13445" checksum="EFC169192365836A" modified="2017-03-15" version="1">MQFDYDDQNIFAKILRGEIPNSTVFESEHALAFHDIQPQAQVHVLVIPKGPYVSLDHFARDASAEEQAGFMAAVAEVCRITGVVDGFRAIANTRTHGVQDVPHFHLHIIGGQQLGRMLPRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RZL3</accession>
    <name>A0A1M5RZL3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Molecular chaperone IbpA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2779</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2 3">Belongs to the small heat shock protein (HSP20) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31655.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902066.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2779"/>
    <dbReference type="EnsemblBacteria" id="SHH31655">
        <property type="protein sequence ID" value="SHH31655"/>
        <property type="gene ID" value="SAMN05444003_2779"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd06470">
        <property type="entry name" value="ACD_IbpA-B_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.790">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002068">
        <property type="entry name" value="A-crystallin/Hsp20_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037913">
        <property type="entry name" value="ACD_IbpA/B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008978">
        <property type="entry name" value="HSP20-like_chaperone"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00011">
        <property type="entry name" value="HSP20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49764">
        <property type="entry name" value="SSF49764"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01031">
        <property type="entry name" value="SHSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0346">Stress response</keyword>
    <feature type="domain" description="SHSP" evidence="4">
        <location>
            <begin position="30"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003616"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS01031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH31655.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="155" mass="17388" checksum="873B1896AB6EB453" modified="2017-03-15" version="1">MRRFDMTPLYRATVGFDQIADLMDRALASDVGQNSYPPYNIEKTEEDGWMISIAVAGFSDTDLAIEVKERSLVITGRKADEGKDRKYLHRGIATRAFERRFHLADHVKVTGASHVDGMLNIDLLREVPEALKPRQIEISKAPSSDANVIDAEKVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S0Z3</accession>
    <name>A0A1M5S0Z3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2800</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32150.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902094.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2800"/>
    <dbReference type="EnsemblBacteria" id="SHH32150">
        <property type="protein sequence ID" value="SHH32150"/>
        <property type="gene ID" value="SAMN05444003_2800"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="419"/>
            <end position="442"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH32150.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="457" mass="51634" checksum="94C712B64C4D72B7" modified="2017-03-15" version="1">MDLLIEKGLMFGNLIRIDSPVLVERYNRALDALTGKRTELTEFHIDIAGFSPEIGDELADPLYLNHEGVNRQFILLTTEQKRAPLLSSKFSTSRSILRQFIDENERELFALTVRDAVAGEVVNSVFRIETPADLFEIRKLRIEADTTDGTVRVAKRLRGMIDEFKTRPDAWFDDVLIGEMIGLAKETGDVTRNPVILPEMEFDQSNFWTSHFGGLYVFRDIENPAVISVGPKKKIGKTPLPIVFDFDDRAHIATFLDLNDLVEPIIKARGMDATAVLRQKMDFIVARVAADRGEELSQATRRDLRALGRKYAASLPAEWQGLAALVRWAEEGGSWPHITSGHPAYFYSLRAKPHKDADLVNRLLAELSPLDFRQLFICHKDAFYAAYAEWPDAKQAYVARFLESEYQVDKAGAREALFGSEADMSEPDPQDASPWSAGRSRDMIDRVGPWGAINRRM</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S128</accession>
    <name>A0A1M5S128_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycolate oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2783</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31733.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902071.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2783"/>
    <dbReference type="EnsemblBacteria" id="SHH31733">
        <property type="protein sequence ID" value="SHH31733"/>
        <property type="gene ID" value="SAMN05444003_2783"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.45.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016166">
        <property type="entry name" value="FAD-bd_PCMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016164">
        <property type="entry name" value="FAD-linked_Oxase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004113">
        <property type="entry name" value="FAD-linked_oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006094">
        <property type="entry name" value="Oxid_FAD_bind_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016171">
        <property type="entry name" value="Vanillyl_alc_oxidase_C-sub2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02913">
        <property type="entry name" value="FAD-oxidase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01565">
        <property type="entry name" value="FAD_binding_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55103">
        <property type="entry name" value="SSF55103"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51387">
        <property type="entry name" value="FAD_PCMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding PCMH-type" evidence="1">
        <location>
            <begin position="48"/>
            <end position="226"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH31733.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="478" mass="50779" checksum="83FA99C070E6897F" modified="2017-03-15" version="1">MEMPQPDQSILNRKNMIVEKLHSVLPADAVIHDPAETRAYECDGLAAYKCPPLCAVLPATTEEVAAVLKICHAEGIPVVPRGSGTSLAGGAMPTADSVILGVARLNQVIETNYPDRTITVQSGRTNLSVTGAVETDGFFYAPDPSSQLACAIAGNIAMNSGGAHCLKYGVTTNNLHGVKMVMMDGTIVDIGGAHLDAGGLDLLGVICGSEGQLGVVTEATLRILHKPEGALPVLMGFDSAEVAGECVSDIIKAGVLPVAIEYMDKLCIEVCEDFAKAGYPLCEALLIVEVEGSELEIEEQLSKIKAIAQTHNPVELREANDADEAARIWLGRKSAFGAMGQINDYMCLDGTIPVSELPFVLRRIGELSKEYGLDVGNVFHAGDGNMHPLILFDANTPGQLETCEALGAEILKLCVEVGGCLTGEHGVGIEKRDLMNAQYTDADLEAQMQVKDVFDPNWLLNPAKVFPLKDSETRRAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S2X6</accession>
    <name>A0A1M5S2X6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">VCBS repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2834</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the peptidase M10B family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2834"/>
    <dbReference type="EnsemblBacteria" id="SHH32992">
        <property type="protein sequence ID" value="SHH32992"/>
        <property type="gene ID" value="SAMN05444003_2834"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04277">
        <property type="entry name" value="ZnMc_serralysin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.150.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018511">
        <property type="entry name" value="Hemolysin-typ_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001343">
        <property type="entry name" value="Hemolysn_Ca-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024079">
        <property type="entry name" value="MetalloPept_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013858">
        <property type="entry name" value="Peptidase_M10B_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006026">
        <property type="entry name" value="Peptidase_Metallo"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034033">
        <property type="entry name" value="Serralysin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011049">
        <property type="entry name" value="Serralysin-like_metalloprot_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010221">
        <property type="entry name" value="VCBS_rpt"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00353">
        <property type="entry name" value="HemolysinCabind"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08548">
        <property type="entry name" value="Peptidase_M10_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00235">
        <property type="entry name" value="ZnMc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51120">
        <property type="entry name" value="SSF51120"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01965">
        <property type="entry name" value="VCBS_repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00330">
        <property type="entry name" value="HEMOLYSIN_CALCIUM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0964">Secreted</keyword>
    <feature type="domain" description="ZnMc" evidence="4">
        <location>
            <begin position="79"/>
            <end position="241"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001913"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH32992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="959" mass="101700" checksum="2EDA9D0AC61CEC09" modified="2017-03-15" version="1">MSNITDVVASYNSLDTSDSLHFNGCACSVCMAAKDDLERSEEGGSGSTASLAAEASLGEMADYLQYGYWNNYGRHHNVGSAGYDANDGVLLYNLSGYGTDADGITEARAELVRDAFDLFEAVLGIEFQETTSTNTSDVDFFFRDNDSGAYAWSSRYGETIRYSEINIAANWSGGSSNYDDYTLQTIIHEIGHALGLGHQGQYNGSANYGSNAIYELDSWQATMMSYFSQTQNSAVDANYEFLQTPMAVDWIALDNIYGQYGYGVSNAFQGDTVYGFNTNISEETSRIWHEFSNYANRTASTIVDGDGIDTLDVSGYSNNQKIDLTIQTADQTYQNSSNIGGRTGNLTLAVGTVIENAVGGSGNDEIIGNSADNILSGGGGNDTLIGLLGNDQFHGNGGTDTVVFSYGFDAYDFSIFGAAIEVVGEGIDYVFDTIENLQFSDGLYSFASLFQNIDNAKPDAVNDVVHLDEGQNSKISILSNDNDADGDALTIVEINGLSVTAGDALTLSSGAEVTLNADGTLTYSQSGAFSALNNGQTAVETITYRVSDGTAFDDAELTIRVSGNSAPNARNDNLSAKVGVRKTFDVLSNDGDDESDTIQITAINGNAIEKGGSVTLSSGARVTLTQTGKLQYDQLGAFLALAAGTSATETFTYTISDGLGADTARANIEVTANSAPIVVDEDVRIGEGRVFALDLLKNDRDKDNDTLSIAEIEGKAISVGGSVVLESGARLILNADGTLTYDQRGAFKGLDNWDSAADAFEYTVSDGSTTTKGSVDVSIDGHSKPKSEYDDWHVGKSSAEWLAVGVVGNNKVFAGNGNDDVVGSSSSKGDVLSGGGGRDWLWGLAGDDILLGNQGQDRLFGGSGSDSLFGGTDNDRLMGGAGADRFVFEKNSGADVIVDFNPNQDQIVIDPDNYATFDDISSRFVRKGDDLLIRLNSDDSIKLLDVSLPDLDESHFVFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S5V6</accession>
    <name>A0A1M5S5V6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Iron complex transport system substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2862</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33658.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902193.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2862"/>
    <dbReference type="EnsemblBacteria" id="SHH33658">
        <property type="protein sequence ID" value="SHH33658"/>
        <property type="gene ID" value="SAMN05444003_2862"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002491">
        <property type="entry name" value="ABC_transptr_periplasmic_BD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01497">
        <property type="entry name" value="Peripla_BP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50983">
        <property type="entry name" value="FE_B12_PBP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012522408" evidence="1">
        <location>
            <begin position="21"/>
            <end position="311"/>
        </location>
    </feature>
    <feature type="domain" description="Fe/B12 periplasmic-binding" evidence="2">
        <location>
            <begin position="39"/>
            <end position="311"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH33658.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="311" mass="34264" checksum="E76E91F9D3C86526" modified="2017-03-15" version="1">MTKTLLTSTALILLANVAAADATVQSCDRTVTFDAPPERAVSNDVNLTEMMLVLGLADRMVGYTGISGWKTLDEEMRAGVEELPELSAKYPSKEVIVGADADFFFAGWNYGMKVGGEVTPETLEPFGVQVYELTESCTHIMEKDKASIEDMYNDLANLGDIFDVEDRATVLIDGYRAELASFTEGLETGEPLRVFVYDSGEDTPFTAGRYAMPTALIEAAGGVNIMDDFEKSWATVTWEEVVERNPEVVMIVNYGDVTAEQKREFMMSNPAFADLDAVKNDRFVTLEYVEATPGPRNIQAIKTLAEAFWAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S6A6</accession>
    <name>A0A1M5S6A6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Acyl-CoA reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2868</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902201.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2868"/>
    <dbReference type="EnsemblBacteria" id="SHH33808">
        <property type="protein sequence ID" value="SHH33808"/>
        <property type="gene ID" value="SAMN05444003_2868"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="4">
        <location>
            <begin position="28"/>
            <end position="489"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="264"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH33808.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="507" mass="54039" checksum="8DADADAF8666160A" modified="2017-03-15" version="1">MKDLTVQPSIGFELPEVFQGKHLIAGEWVSEGDTFDRISPSHGVVVSRSAKGDEAMTERAIAAARETFDSGAWSRISGKERAAALLKVADLIEANVDRIAVQESLESGKPISQARGEVGGAADLWRYAASLARTTHGDSHNTLGEDMLGVVVKDPIGVVSIITPWNFPFWILSQKLPFALAAGCTVVVKPSEMTPSSTVMMGELLVEAGLPAGVCNIVLGYGQPVGSVMSTHKDVDMVTFTGSTAVGKLITEASAGTLKKVALELGGKNPQVIFPDADLDNATDAVTFGVYFNVGQCCNSSSRIIVHEDIAEDFVARVVALSRKVKFGDPMDPETQVGAIVTAEHNAKIDGYVQKAVQAGARVEIGGATLAVDGLGEQFYQPTVVSGVTADMAIAREEVFGPVLTVLTFRTLDEAIALTNDSDYGLSAGVWSDDIHTCLEFARRADAGTVWTNTWMDGYPELAFGGMKQSGQGREIGRYGFEEFLEVKSLVMRVGRDSRAPWVNSGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SD98</accession>
    <name>A0A1M5SD98_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sarcosine oxidase subunit beta</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2909</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36496.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902300.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2909"/>
    <dbReference type="EnsemblBacteria" id="SHH36496">
        <property type="protein sequence ID" value="SHH36496"/>
        <property type="gene ID" value="SAMN05444003_2909"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008115">
        <property type="term" value="F:sarcosine oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046653">
        <property type="term" value="P:tetrahydrofolate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001763">
        <property type="entry name" value="Rhodanese-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006278">
        <property type="entry name" value="SoxB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01373">
        <property type="entry name" value="soxB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50206">
        <property type="entry name" value="RHODANESE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rhodanese" evidence="1">
        <location>
            <begin position="35"/>
            <end position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH36496.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="416" mass="44974" checksum="00579ED34E4FA8AC" modified="2017-03-15" version="1">MKRYSAWQLFREGLRGGKGWGMAWRTPKPKKQYDVVIIGAGGHGLSTAYYLAKNHGITDIAVIEKGWLGGGNTGRNTTAIRSNYFYPESAQLYDLSVRLYEGLSKDLNYNVMFSQRGMMVLAHSEPEMEMAARQYNAMRLNGIDAEFLDAKEVRKRAPILNYRDDARYPIHGAVNQPRGGTGRHDAVAWGYARAADALGVDIIQNCEVTDFLMEGGRCVGVNTAFGEIRSGMVAATVAGHSSVIAGMAGFKLPIHSYALQAFVSEPYKPVLDTVVLSPAVGTYISQSDKGGLVFGGALDRVPSYGQRGNMPVQEAVIGGLLEFMPALSKVKLLRHWGGIVDVTPDSSPIIGPSGVDGLYLNCGWGTGGFKAIPAGGYLLAHRMATGQHHEISRPFDLDRFTTGRLIDESAASGIAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SEB6</accession>
    <name>A0A1M5SEB6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="15">Na(+)-translocating NADH-quinone reductase subunit D</fullName>
            <shortName evidence="15">Na(+)-NQR subunit D</shortName>
            <shortName evidence="15">Na(+)-translocating NQR subunit D</shortName>
            <ecNumber evidence="15">7.2.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="15">NQR complex subunit D</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="15">NQR-1 subunit D</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="15" type="primary">nqrD</name>
        <name evidence="16" type="ORF">SAMN05444003_2922</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="15">NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="15">
            <text>a ubiquinone + H(+) + n Na(+)(in) + NADH = a ubiquinol + n Na(+)(out) + NAD(+)</text>
            <dbReference type="Rhea" id="RHEA:47748"/>
            <dbReference type="Rhea" id="RHEA-COMP:9565"/>
            <dbReference type="Rhea" id="RHEA-COMP:9566"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16389"/>
            <dbReference type="ChEBI" id="CHEBI:17976"/>
            <dbReference type="ChEBI" id="CHEBI:29101"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="7.2.1.1"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="15">Composed of six subunits; NqrA, NqrB, NqrC, NqrD, NqrE and NqrF.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="15">Cell membrane</location>
            <topology evidence="15">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="15">Belongs to the NqrDE/RnfAE family.</text>
    </comment>
    <dbReference type="EC" id="7.2.1.1" evidence="15"/>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36819.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902321.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2922"/>
    <dbReference type="EnsemblBacteria" id="SHH36819">
        <property type="protein sequence ID" value="SHH36819"/>
        <property type="gene ID" value="SAMN05444003_2922"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016655">
        <property type="term" value="F:oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009399">
        <property type="term" value="P:nitrogen fixation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006814">
        <property type="term" value="P:sodium ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00428">
        <property type="entry name" value="NqrD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011292">
        <property type="entry name" value="NqrD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003667">
        <property type="entry name" value="NqrDE/RnfAE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30586:SF1">
        <property type="entry name" value="PTHR30586:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02508">
        <property type="entry name" value="Rnf-Nqr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006102">
        <property type="entry name" value="NQR_DE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01939">
        <property type="entry name" value="nqrD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="3 15" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10 15" id="KW-0406">Ion transport</keyword>
    <keyword evidence="12 15" id="KW-0472">Membrane</keyword>
    <keyword evidence="8 15" id="KW-0520">NAD</keyword>
    <keyword evidence="14" id="KW-0535">Nitrogen fixation</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 15" id="KW-0915">Sodium</keyword>
    <keyword evidence="13 15" id="KW-0739">Sodium transport</keyword>
    <keyword evidence="6 15" id="KW-1278">Translocase</keyword>
    <keyword evidence="5 15" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 15" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 15" id="KW-0813">Transport</keyword>
    <keyword evidence="11 15 16" id="KW-0830">Ubiquinone</keyword>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="38"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="71"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="98"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="137"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="179"/>
            <end position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023053"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00428"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="SHH36819.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="217" mass="23749" checksum="6F3EA008EF0F8918" modified="2017-03-15" version="1">MAHKRREMLVDPLVDNNPITLQVLGICSALAVTSSMQVALVMTIAVTFVTAFASMFISIIRNHIPGSIRIIVQMVIIASLVILVDQILKAYAFEISKTLSVFVGLIITNCIVMGRAEAFAMKNPPIDSFIDGVGNGLGYGLILMLVGFIRELFGSGSLFGVTIFETVNNGGWYVPNGMLLLPPSAFFIIGLIIWAFRAWKPAQVEEREYKIQTVDAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SLN1</accession>
    <name>A0A1M5SLN1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3044</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH39477.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902495.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH39477">
        <property type="protein sequence ID" value="SHH39477"/>
        <property type="gene ID" value="SAMN05444003_3044"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH39477.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="552" mass="62198" checksum="7A6B0B9BE9C9A26E" modified="2017-03-15" version="1">MKINLLSSLFLISSEDFPECHRFSGYFFEGANLYQGTEGATHFYEQFGCLPSGQDGIFVSVTRKKQILEIAGDSAGLVPLFLLRVPGYWAVSPSFDRLLTEAKKHGHQLNILPDVLQAWRITGAIAQFPTTSQTCVAEITVVPTWGEIVCTADKAVIVPRKQTFAENYQEAINRYRVETIGRFRTIVSSNEPLTFDITGGIDSRSILATAWEAFGAEEFRALNRAGKISLRSNPKQGVDIRIANKIVEALDVELSGPINLGDFAENPANLSQKGSRQSKILSVWRRQRLGRSAIPQWNHNHVDGFWSSGVFGGNFKSPNPNELSVWDGQRFLEKFERHFDNRSLFEGWRDRVLEDQVAAQIHGRGHRLPFWPVFNRDVVMRMHARQYLGSKRLYPLSFKSLNDAANFLDAFSLRNHQIHHDLIFTGAPELIEIEYDKEAKSVQDGFSPSILAKNDSFDKDALEGRQFGTKTLDEATETLPPCNPSELSQLVSKRALRLLKDPEIAKLVGARGTRKRQRMLKEVSNLGPGQSHVLANSHLPHLIDRLKKMDML</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SV54</accession>
    <name>A0A1M5SV54_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 13">Membrane protein insertase YidC</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="12 13">Foldase YidC</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11 13">Membrane integrase YidC</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">Membrane protein YidC</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="primary">yidC</name>
        <name evidence="15" type="ORF">SAMN05444003_3135</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="13">Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.</text>
    </comment>
    <comment type="subunit">
        <text evidence="13">Interacts with the Sec translocase complex via SecD. Specifically interacts with transmembrane segments of nascent integral membrane proteins during membrane integration.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="13">Cell membrane</location>
            <topology evidence="13">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 13">Belongs to the OXA1/ALB3/YidC family. Type 1 subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42412.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902698.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3135"/>
    <dbReference type="EnsemblBacteria" id="SHH42412">
        <property type="protein sequence ID" value="SHH42412"/>
        <property type="gene ID" value="SAMN05444003_3135"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032977">
        <property type="term" value="F:membrane insertase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.98.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01810">
        <property type="entry name" value="YidC_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019998">
        <property type="entry name" value="Membr_insert_YidC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028055">
        <property type="entry name" value="Membr_insert_YidC/Oxa1_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028053">
        <property type="entry name" value="Membr_insert_YidC_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001708">
        <property type="entry name" value="YidC/ALB3/OXA1/COX18"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038210">
        <property type="entry name" value="YidC_periplasmic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038221">
        <property type="entry name" value="YidC_periplasmic_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12428">
        <property type="entry name" value="PTHR12428"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02096">
        <property type="entry name" value="60KD_IMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14849">
        <property type="entry name" value="YidC_periplas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00701">
        <property type="entry name" value="60KDINNERMP"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01900">
        <property type="entry name" value="YIDCPROTEIN"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03593">
        <property type="entry name" value="yidC_nterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03592">
        <property type="entry name" value="yidC_oxa1_cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 13" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10 13" id="KW-0143">Chaperone</keyword>
    <keyword evidence="9 13" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 13" id="KW-0653">Protein transport</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 13" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 13" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4 13" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="7"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="363"/>
            <end position="383"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="426"/>
            <end position="446"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="492"/>
            <end position="511"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="532"/>
            <end position="552"/>
        </location>
    </feature>
    <feature type="domain" description="YidC_periplas" evidence="14">
        <location>
            <begin position="73"/>
            <end position="352"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00015325"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00033245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00033342"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF14849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="SHH42412.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="598" mass="67141" checksum="AA875CA4DB8765D4" modified="2017-03-15" version="1">MDEQNRNLILATALSFLVILVWFWLFPPEEVQPPVEDASVATQNVDATLPTASGTETTTTTVAPSEDVVEAGRIDIETGKLLGSISLQGGRIDDLSLLGYQETIEEGSPTVKLLKPEGEREAYFAAYGWIGLDGLTAVPTPETLWSLESGETLTVDTPVTLVWDNGEGQTFRRTISVDEEFMFTVTQSVENNGADITARPYGLLRRYGEPSDLKNFFILHEGLVRMSDGELEETDYDDIVDYTENEGRIDVAEQGWIGWTDHYWMTTLIPDPGTGFRSETRYFANRDIYQAEAVLAPMTIAAGTTSEITTHLFAGAKEWDAIRAYEEEGVEGFLDSIDWGWFFFLTKPIFWLLHTLNVMIGNMGWAIIALTFVIKLIVLPLAYKSYVSMAKMKELQPEMEALKERVGEDRQAMQQGMMKLYKDNKVNPASGCLPILIQIPIFFSLYKVIFVTIELRHAPWIGWIKDLSAPDPSSIFNMFGLFPWDAPEPTSFMALIFIGILPILLGISMWLQQKLNPAPTDPTQKMIFAWMPWVFMFMLGGFASGLVIYWIANNVITFIQQYSIMRSVGAKPDIFGNIRDGFKRASKPDADDSKSKGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SVM3</accession>
    <name>A0A1M5SVM3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="10">L-glutamine ABC transporter membrane protein /L-glutamate ABC transporter membrane protein /L-aspartate ABC transporter membrane protein /L-asparagine ABC transporter membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_3146</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the binding-protein-dependent transport system permease family. HisMQ subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42602.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902716.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3146"/>
    <dbReference type="EnsemblBacteria" id="SHH42602">
        <property type="protein sequence ID" value="SHH42602"/>
        <property type="gene ID" value="SAMN05444003_3146"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010065">
        <property type="entry name" value="AA_ABC_transptr_permease_3TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043429">
        <property type="entry name" value="ArtM/GltK/GlnP/TcyL/YhdX-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30614">
        <property type="entry name" value="PTHR30614"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01726">
        <property type="entry name" value="HEQRo_perm_3TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="28"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="98"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="140"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="196"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="227"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="268"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="348"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="372"/>
            <end position="397"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="94"/>
            <end position="394"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH42602.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="406" mass="44425" checksum="3CDCD4343C27AE1D" modified="2017-03-15" version="1">MSTTTDPDTRPDGFRLGMLINDTRYRSYTFQFIALVLLILGLGYLISNLLDNLARAGLNISWAFLGEPAGYDINQRPIEYTSQSTHARASMVGAINTLIVAFLACISATVIGVVAGVLRLSNNWIVSKLMSVYVEAFRNVPVLIWILIIFLAMSNALPQPRTFRGDDATSSMLFDAIAVTNRGVYIPSFVNGAGSLIFWIVVIASIVGVFWYRKYAKKVLYATGRMLPTFLPSLGILIVPGLLAYFILGRPVTLEYPELSGFNFKGGIHLRLSLIALWFALAIYTGAFIAENVRAGIQAVSKGQTEAAGALGLRPGRIMNLVILPQALRVIIPPLISQYLNITKNSSLAIAVGYMDITGTLGGITLNQTGRAIEAILLLMLFYLVVSLSISAIMNVYNNRMKLQER</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SWV3</accession>
    <name>A0A1M5SWV3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">N-acyl-L-homoserine lactone synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3152</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42698.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3152"/>
    <dbReference type="EnsemblBacteria" id="SHH42698">
        <property type="protein sequence ID" value="SHH42698"/>
        <property type="gene ID" value="SAMN05444003_3152"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH42698.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="186" mass="21087" checksum="ADB2A182C25A4F52" modified="2017-03-15" version="1">MSFSNIHRHGELFGKIMEARKPTQLPSNWEDTGTGNHDFDQYDTPQSRWLAIQSDDGDVLASLRLTPTTAQSGVYSYMIRDAQKGLLEDVPKDLLFEDAPVDEGTWEMTRANLKPGMFGVDRDVVRYRLLQQLSETAKTEKIAKFVALLPTNWKSWALDHDFKIKPAGRVWRVGGRDLQAHILSVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SXW9</accession>
    <name>A0A1M5SXW9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">50S ribosomal protein L29</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpmC</name>
        <name evidence="6" type="ORF">SAMN05444003_3176</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the universal ribosomal protein uL29 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH43190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902766.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3176"/>
    <dbReference type="EnsemblBacteria" id="SHH43190">
        <property type="protein sequence ID" value="SHH43190"/>
        <property type="gene ID" value="SAMN05444003_3176"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.310">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00374">
        <property type="entry name" value="Ribosomal_L29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001854">
        <property type="entry name" value="Ribosomal_L29/L35"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036049">
        <property type="entry name" value="Ribosomal_L29/L35_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00831">
        <property type="entry name" value="Ribosomal_L29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46561">
        <property type="entry name" value="SSF46561"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00012">
        <property type="entry name" value="L29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 6" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00374"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH43190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="68" mass="7675" checksum="C73AD2F423C94E42" modified="2017-03-15" version="1">MDAKELREKTPDQLRDELANLKKESFNLRFQQATGQMENTAAMRNARRNAARVKTILNEKAAAAAKEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SY18</accession>
    <name>A0A1M5SY18_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 7 9">50S ribosomal protein L16</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rplP</name>
        <name evidence="12" type="ORF">SAMN05444003_3187</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7 9">Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7 9">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 8">Belongs to the universal ribosomal protein uL16 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH43417.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902781.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3187"/>
    <dbReference type="EnsemblBacteria" id="SHH43417">
        <property type="protein sequence ID" value="SHH43417"/>
        <property type="gene ID" value="SAMN05444003_3187"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01433">
        <property type="entry name" value="Ribosomal_L16_L10e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1170.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01342">
        <property type="entry name" value="Ribosomal_L16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016180">
        <property type="entry name" value="Ribosomal_L10e/L16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036920">
        <property type="entry name" value="Ribosomal_L10e/L16_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000114">
        <property type="entry name" value="Ribosomal_L16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020798">
        <property type="entry name" value="Ribosomal_L16_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12220">
        <property type="entry name" value="PTHR12220"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00252">
        <property type="entry name" value="Ribosomal_L16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00060">
        <property type="entry name" value="RIBOSOMALL16"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54686">
        <property type="entry name" value="SSF54686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01164">
        <property type="entry name" value="rplP_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00586">
        <property type="entry name" value="RIBOSOMAL_L16_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00701">
        <property type="entry name" value="RIBOSOMAL_L16_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7 8" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 7 8" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="7 9" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 7 9" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="2 7 9" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="Ribosomal_L16" evidence="11">
        <location>
            <begin position="4"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="10">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00029546"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01342"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004413"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU004414"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00252"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHH43417.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="137" mass="15664" checksum="E6C8A3EB7D927DB4" modified="2017-03-15" version="1">MLQPKRTKFRKMHKGRIKGQAKGGSDLNFGTYGLKALEPERISARQIEAARRAMTRQMKRQGRVWIRIFPDVPVSAKPIEVRMGKGKGSVDRWTAKVKPGRIMFEIDGVPEPIAREALRLAAMKLPIKTRTVVREDW</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TA67</accession>
    <name>A0A1M5TA67_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3297</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000009">
        <property type="protein sequence ID" value="SHH47578.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072903004.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000009.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3297"/>
    <dbReference type="EnsemblBacteria" id="SHH47578">
        <property type="protein sequence ID" value="SHH47578"/>
        <property type="gene ID" value="SAMN05444003_3297"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH47578.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="218" mass="24521" checksum="91ED310C82ECC535" modified="2017-03-15" version="1">MPVIPLSIADPFFAVLVVENEPAVEIDRRTIVLNLSDTAIVVQDQTIGSLQSVILQNTEIKHVAHAVLIKGLDDHPDDAELMRSVRDAWPSAYDVRKEERLKGIGHYMSPKVWVGQFGFTLYHSATIPLNVGLHKFHDFCPVPGFREVHTQIVGFGKMQQCREKDINTLYCEEPMAPGTTHRPMYDAEGNYPWHQYETITPSIFMAVEMLPDGATPPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L0M5</accession>
    <name>A0A1M5L0M5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized alpha/beta hydrolase domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0030</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58567.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898358.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG58567">
        <property type="protein sequence ID" value="SHG58567"/>
        <property type="gene ID" value="SAMN05444003_0030"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018712">
        <property type="entry name" value="DUF2235"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09994">
        <property type="entry name" value="DUF2235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF2235" evidence="1">
        <location>
            <begin position="31"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG58567.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="354" mass="39683" checksum="6C5D8AE2F8904DC1" modified="2017-03-15" version="1">MSLRDWVLGLLGRGPTQETGPRVVRGHATHVIILDGTASSLMPGCETNAGLTYQLLREVGSRGDLSIYYEAGIQWQDWRGTWDVMTGKGINRQIRRAYGVLASRYRPGDKIVLIGYSRGAYAVRSLAGVLDLVGLLKPEAATVSNIRTAYRHYQAGATSQAAAEFRCYCHDDAPIEAVAVWDTVKALGFRFPLIWRWTMRKHAFHNHALGPSIRNGFHAVARDETRMAYAPVMWMCPVAWEGRMEQVWFKGTHADIGGQVGPSHRYRPLSNIPLVWMLEQLEQVGMPLPEGWKNRYPQDVETPSIGRWHGWSKLFLHRRKRKIGVCRSESLHPTIAGDVTDDARDAILIGSEAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L388</accession>
    <name>A0A1M5L388_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0063</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG59249">
        <property type="protein sequence ID" value="SHG59249"/>
        <property type="gene ID" value="SAMN05444003_0063"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012115662" evidence="1">
        <location>
            <begin position="21"/>
            <end position="227"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG59249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="227" mass="23132" checksum="8CA226A5CE01B0DE" modified="2017-03-15" version="1">MFARNFLRSALALGGFAALASCGGGSTSTPAAASFADVQGEISDFVDELNALPATPVSNLPVNQDISYRGAIVVFETNDRLEQFSPLGVPGLDLDFASRAPTLDLDYAAIGELDIVIGYPAPGGRGTITGSADNFYELRNPNGGVDAAGSRGSIDGSLNFGRNGVISGDLDKVSGETASYELRSGDFGFILPFGNNADAIAGGAIGNSSASGRARVNAGAVFLGDRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L435</accession>
    <name>A0A1M5L435_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 11">Protein-export membrane protein SecG</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">SAMN05444003_0091</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Involved in protein export. Participates in an early event of protein translocation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 11">Cell membrane</location>
            <topology evidence="2 11">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 11">Belongs to the SecG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59778.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898437.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0091"/>
    <dbReference type="EnsemblBacteria" id="SHG59778">
        <property type="protein sequence ID" value="SHG59778"/>
        <property type="gene ID" value="SAMN05444003_0091"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015450">
        <property type="term" value="F:protein-transporting ATPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009306">
        <property type="term" value="P:protein secretion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004692">
        <property type="entry name" value="SecG"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34182">
        <property type="entry name" value="PTHR34182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03840">
        <property type="entry name" value="SecG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01651">
        <property type="entry name" value="SECGEXPORT"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00810">
        <property type="entry name" value="secG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 11" id="KW-0653">Protein transport</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 11" id="KW-0811">Translocation</keyword>
    <keyword evidence="6 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 11" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5 11" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="51"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="86"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008445"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00017876"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU365087"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHG59778.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="118" mass="11432" checksum="F834FD6706F3C7BB" modified="2017-03-15" version="1">MENVVLVIHLILASSLIGAVLMQRSEGAGLGLGGGGGGPTGGRAAATALGKFTWLIAIGFICTSIALTIIGAQNASGSSVVDGLDLLPPAAEDGTTPDLGDSLLPPSGGDEPLIPSGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LA20</accession>
    <name>A0A1M5LA20_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Cell division protein FtsQ</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">ftsQ</name>
        <name evidence="10" type="ORF">SAMN05444003_0182</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Essential cell division protein.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell inner membrane</location>
            <topology evidence="8">Single-pass type II membrane protein</topology>
        </subcellularLocation>
        <text evidence="8">Localizes to the division septum.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the FtsQ/DivIB family. FtsQ subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61810.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898549.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0182"/>
    <dbReference type="EnsemblBacteria" id="SHG61810">
        <property type="protein sequence ID" value="SHG61810"/>
        <property type="gene ID" value="SAMN05444003_0182"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032153">
        <property type="term" value="C:cell division site"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090529">
        <property type="term" value="P:cell septum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043093">
        <property type="term" value="P:FtsZ-dependent cytokinesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11690">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00911">
        <property type="entry name" value="FtsQ_subfam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005548">
        <property type="entry name" value="Cell_div_FtsQ/DivIB_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026579">
        <property type="entry name" value="FtsQ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045335">
        <property type="entry name" value="FtsQ_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034746">
        <property type="entry name" value="POTRA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013685">
        <property type="entry name" value="POTRA_FtsQ_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35851">
        <property type="entry name" value="PTHR35851"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03799">
        <property type="entry name" value="FtsQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08478">
        <property type="entry name" value="POTRA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51779">
        <property type="entry name" value="POTRA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="3 8 10" id="KW-0132">Cell division</keyword>
    <keyword evidence="2 8" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="1 8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="28"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="domain" description="POTRA" evidence="9">
        <location>
            <begin position="81"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00911"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51779"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG61810.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="295" mass="32603" checksum="5947C4D1418C783C" modified="2017-03-15" version="1">MRPLIRRNHRASLRDPAPSKWGYRMQRLLLTPGFVTSVRVGIPLALIGIIAATWFSDEQRVADFNKRIAEVKASVQERPEFMVTSLDVVGAGPVLEADVRRVLPIDFPASSFDLDLEAMREVVAALNAVADASVRVGENNALTVEVTPRIPVALWRAHDNLRLIDADGVFSGVVAERGDRLDLPLIAGDGAHDHIQEALALFRNAGPLAPRVRGLVRMGERRWDIVLDRGQRIKLPAEGAMAALDRVIVLHQSNDILEKDVVAIDLRNRDRATVQMTTEAASALRRVNTFEAEDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LAN5</accession>
    <name>A0A1M5LAN5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Cobaltochelatase CobS subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0193</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CbbQ/NirQ/NorQ/GpvN family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0193"/>
    <dbReference type="EnsemblBacteria" id="SHG62081">
        <property type="protein sequence ID" value="SHG62081"/>
        <property type="gene ID" value="SAMN05444003_0193"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011704">
        <property type="entry name" value="ATPase_dyneun-rel_AAA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013615">
        <property type="entry name" value="CbbQ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025865">
        <property type="entry name" value="CobS_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006537">
        <property type="entry name" value="PD_CobS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07728">
        <property type="entry name" value="AAA_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08406">
        <property type="entry name" value="CbbQ_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12556">
        <property type="entry name" value="CobS_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01650">
        <property type="entry name" value="PD_CobS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CobS_N" evidence="4">
        <location>
            <begin position="15"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="domain" description="AAA_5" evidence="2">
        <location>
            <begin position="74"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="domain" description="CbbQ_C" evidence="3">
        <location>
            <begin position="245"/>
            <end position="300"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08406"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF12556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG62081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="335" mass="37536" checksum="E87FD215AA4E39DA" modified="2017-03-15" version="1">MNLKGEDMADGMIDMDAKPTEEISVREVFGIDTDMKVKGFADASDRVPEIDSTYKFDPDTTLAILAGFGYNRRVMIQGYHGTGKSTHIEQVAARLNWPAVRVNLDSHISRIDLIGKDAIKLRDGVQVTEFHEGILPWALRNPVAIVFDEYDAGRADVMFVIQRVLEHDGKLTLMDQNQILTPHPYFRLFATANTVGLGDTTGLYHGTQQINQAQMDRWSLVATLNYLSHDAEAAIVLSKSPHFNTEVGRKTISQMVTVADLTRTAFMNGDLSTVMSPRTVLAWAENTRIFQDVGYAFRLSFLNKCDELERQTVAEFYQRCFDEELPESAASMSLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LFA8</accession>
    <name>A0A1M5LFA8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Nitrate/nitrite transport system ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0245</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63379.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898664.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0245"/>
    <dbReference type="EnsemblBacteria" id="SHG63379">
        <property type="protein sequence ID" value="SHG63379"/>
        <property type="gene ID" value="SAMN05444003_0245"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015112">
        <property type="term" value="F:nitrate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005890">
        <property type="entry name" value="NO3_transporter_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01184">
        <property type="entry name" value="ntrCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="4"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="290"/>
            <end position="520"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="36"/>
            <end position="43"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="323"/>
            <end position="330"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG63379.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="555" mass="61293" checksum="EFD353744AC54AB1" modified="2017-03-15" version="1">MSFLSFKDVSKGYGDMPVLKDINLDVEEGEFVVILGFSGTGKTTLVNLMAGLEMPTSGSVTFKGEPITEPGRERGVIFQSYSLMPWLTVNGNVALAVDTMFPELSKQERAAKVDHYVKMVGLSHATTRRPAELSGGMRQRVNVARALAMDPEMLLLDEPLSALDALTRANLADEIEAIWHKDKKTCVLITNDVDEAIILADRIIALNPDGTLGDEFKVSIPRPRDRMEMNNNETFKTLRRDVTKYLMDVGIEAKVEGSRILPDVTPIHGVPAAVAKAQEGLIENRFLDFSQLDKVYPTPNGPLTVVEDFDLKIDKGEFISLIGHSGCGKSTVLTMAAGLNEISKGAIRLDGRHVEGADPERAVVFQSPNLFPWLTAKENVAIGVDKVYPKASQTERQDVVEYYLERVGLADSMDKGAADLSNGMKQRVGIARAFALSPKLLLLDEPFGMLDSLTRWELQEVLMEVWSRTKVTAICVTHDVDEAILLADRVVMMTNGPQATIGKIVDVDLPRPRTRKALLEHPDYYAYRQDVLDFLEEYEHGAKPKPKKLAAIAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LGI2</accession>
    <name>A0A1M5LGI2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">WYL domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0273</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64075.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898706.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0273"/>
    <dbReference type="EnsemblBacteria" id="SHG64075">
        <property type="protein sequence ID" value="SHG64075"/>
        <property type="gene ID" value="SAMN05444003_0273"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013196">
        <property type="entry name" value="HTH_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026881">
        <property type="entry name" value="WYL_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08279">
        <property type="entry name" value="HTH_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13280">
        <property type="entry name" value="WYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH_11" evidence="1">
        <location>
            <begin position="6"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="domain" description="WYL" evidence="2">
        <location>
            <begin position="135"/>
            <end position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08279"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13280"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG64075.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="219" mass="24633" checksum="E4A7CCEA01E8D078" modified="2017-03-15" version="1">MRRSDRLMNLIQILRDGSLHKAEDLAKRTDVSLRTIYRDMDTLAASGVPIEGERGVGYRVMAAITLPPLNLTMTEVEALHLGLMAVSTSTDPDLTQAAKDLARKLDSVMPEDPSKAPEGFNLAVYPFADAARGFQHLPTIRQAIRTRQKLSVTLDDNIRTLRPLQLDYWGRLWTCVAWCETTQSFDELRVDQISDLRILPGLFVDEADKSYAAYLRQKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LI14</accession>
    <name>A0A1M5LI14_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0301</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64681.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898739.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0301"/>
    <dbReference type="EnsemblBacteria" id="SHG64681">
        <property type="protein sequence ID" value="SHG64681"/>
        <property type="gene ID" value="SAMN05444003_0301"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008775">
        <property type="entry name" value="Phytyl_CoA_dOase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05721">
        <property type="entry name" value="PhyH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG64681.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="381" mass="41738" checksum="0C8FE0477627F174" modified="2017-03-15" version="1">MQGYFSDADCNIDNFAAHLDQVTASDAVPFASSIVHNIPIYDMEELRPTLHSERRRALLSEWAAVMLNGCGVIVLKSAYAHTDAIDEATDVYLKIIAEEKEQSGAVGDHFAAAGSNDRVWNALQKLCMADPALFARYFGNEAIQAASEAWLGPMYQMTAQVNLVYPGGAAQTAHRDYHLGFQTADVAGSFPAHVHDLSPVMTLQGAIAHCDMPVESGPTKLLPFSQSYRPGYMAYRLPEFQDHFEENHVQIPLEKGDAIFFNPALFHAAGSNTSKDINRFANLLQVGSAMGRSIEAVDRTAMCKALYPELRRANLSPHEKDAAIACCAEGYSFPTNLDSDPPIGGLVPQTHADLFREALDEGWDNDVFDAALDELDARRRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LK71</accession>
    <name>A0A1M5LK71_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Rhamnose ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0334</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65300.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900361.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0334"/>
    <dbReference type="EnsemblBacteria" id="SHG65300">
        <property type="protein sequence ID" value="SHG65300"/>
        <property type="gene ID" value="SAMN05444003_0334"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="21"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="268"/>
            <end position="510"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="53"/>
            <end position="60"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG65300.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="510" mass="54995" checksum="019C18BA4A568595" modified="2017-03-15" version="1">MLMETDQKSAPTGAEPKVPVLALREVTKTFPGVTALSEVSLELFPGKVTALVGENGAGKSTVVKIMTGIYQPNGGQIEIDGSPVHFPTAQDAGDVGVTAIHQETVLFDELSVAENVFLGHAPRGRFGLIDTSAMMDHSREILDGIGASIDPRTKLKDLGIANKHLVAIARALSIDARVVIMDEPTAALSQKEIEELYELVEELKAQGKAILFISHKFDEIFRIADSYTVFRDGALVGNGAIADVTEAELVKLMVGRDVSQIFPNRERNTGDEIFSVDGYEHPTEFADISFTLRRGEILGFYGLVGAGRSEFMQALFGITRPSSGKVTIDGEDAIIRSPADAVGKGIVYVPEDRGRQGAITTLPIFQNVTLPSLDRTSKNGFLRLAEEFKLAREYTERLDLRAASLDTDVGNLSGGNQQKVVIAKWLATQPKVIILDEPTKGIDIGSKAAVHEFMAELAAQGLAVIMISSEIPEVLGMSDRVIVMREGRIATEVTGEDMTPETLVRHAAGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LMY3</accession>
    <name>A0A1M5LMY3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Enoyl-[acyl-carrier-protein] reductase [NADH]</fullName>
            <ecNumber evidence="7">1.3.1.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_0386</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>a 2,3-saturated acyl-[ACP] + NAD(+) = a (2E)-enoyl-[ACP] + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:10240"/>
            <dbReference type="Rhea" id="RHEA-COMP:9925"/>
            <dbReference type="Rhea" id="RHEA-COMP:9926"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:78784"/>
            <dbReference type="ChEBI" id="CHEBI:78785"/>
            <dbReference type="EC" id="1.3.1.9"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Lipid metabolism; fatty acid biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the short-chain dehydrogenases/reductases (SDR) family. FabI subfamily.</text>
    </comment>
    <dbReference type="EC" id="1.3.1.9" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66437.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898860.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0386"/>
    <dbReference type="EnsemblBacteria" id="SHG66437">
        <property type="protein sequence ID" value="SHG66437"/>
        <property type="gene ID" value="SAMN05444003_0386"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00094"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004318">
        <property type="term" value="F:enoyl-[acyl-carrier-protein] reductase (NADH) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016631">
        <property type="term" value="F:enoyl-[acyl-carrier-protein] reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd05372">
        <property type="entry name" value="ENR_SDR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014358">
        <property type="entry name" value="Enoyl-ACP_Rdtase_NADH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43159">
        <property type="entry name" value="PTHR43159"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000094">
        <property type="entry name" value="Enoyl-ACP_rdct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="6 7" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="7" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="6 7" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="5 7 9" id="KW-0520">NAD</keyword>
    <keyword evidence="4 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="8">
        <location>
            <position position="147"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="8">
        <location>
            <position position="157"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="15"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="21"/>
            <end position="22"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="42"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="66"/>
            <end position="67"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="94"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="164"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="193"/>
            <end position="197"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009233"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRNR" id="PIRNR000094"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000094-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000094-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG66437.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="268" mass="28740" checksum="4FDCBDB5CD3910CC" modified="2017-03-15" version="1">MSNNLLSGKRGLIMGLANDKSIAWGIAKACADAGAELAFSYQGDALKKRVEPLAQSVGSDTVLPCDVSDEASIDGLFDALKDKWGSIDFVVHAIGFSDKSELRGRYVDTSRGNFAMSMDISVYSFTAVVQRAEKMMNEGGSCLTLTYYGAERVMPHYNVMGVAKAALEASVRYLAEDLGKDGIRVNAISAGPIKTLAASGIGDFRYILKWNEYNSPLRRTVTIEDVGKSALYLLSDLGSGTTGEVLHVDSGYHVVGMKAVDAPDITKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LST5</accession>
    <name>A0A1M5LST5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0461</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68157.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG68157">
        <property type="protein sequence ID" value="SHG68157"/>
        <property type="gene ID" value="SAMN05444003_0461"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG68157.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="84" mass="9152" checksum="5C640816F557B7BD" modified="2017-03-15" version="1">MSSGFFIFLVSSAILILLIGRAISVVQKEGNEPVRGSEPGEGVHTIHAEYSSGFSGHSTTYTIPRDPQAYAKRFVPKQRTDNAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LU67</accession>
    <name>A0A1M5LU67_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DNA-binding transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0477</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68536.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898991.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG68536">
        <property type="protein sequence ID" value="SHG68536"/>
        <property type="gene ID" value="SAMN05444003_0477"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="6"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG68536.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="299" mass="32596" checksum="94A709FFBBE14010" modified="2017-03-15" version="1">MIKSRFTLKQLEAFAFVVDLGTFRAAAEVLGTTQPNISARIAALEATLGATLLQRDAGSVRLTAEGEALLDNAREVLWAGEALLEAAGRRDSVTERLRLGVTELVACTWLQPFLKRLRAEYPQLKIELQVDLSAKIDDLLGAGLLDLALQNLPFSRKVSAQIALGRVPYVWVERVEGAAQARVRKTVEQLFEQPVMTHARETQAGLALHDMARERGLDVGQIVHSSALSACLPMLHEGVGVALLPCPLVQGDVSRGELRLIQVDWAPPELEFYARYHADRAARFVGQAAEVAAEVFAAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LUC9</accession>
    <name>A0A1M5LUC9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Indolepyruvate ferredoxin oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0465</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898979.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0465"/>
    <dbReference type="EnsemblBacteria" id="SHG68249">
        <property type="protein sequence ID" value="SHG68249"/>
        <property type="gene ID" value="SAMN05444003_0465"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016903">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07034">
        <property type="entry name" value="TPP_PYR_PFOR_IOR-alpha_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.920.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019752">
        <property type="entry name" value="Pyrv/ketoisovalerate_OxRed_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002880">
        <property type="entry name" value="Pyrv_Fd/Flavodoxin_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002869">
        <property type="entry name" value="Pyrv_flavodox_OxRed_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009014">
        <property type="entry name" value="Transketo_C/PFOR_II"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01558">
        <property type="entry name" value="POR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52922">
        <property type="entry name" value="SSF52922"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53323">
        <property type="entry name" value="SSF53323"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="2">
        <location>
            <begin position="626"/>
            <end position="656"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG68249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="1136" mass="124429" checksum="A65EAB032695DCD0" modified="2017-03-15" version="1">MSHEKISLNDRYDLDKTTVLLNGTQALVRLMLMQRARDERAGLNTAGYVTGYRGSPLGAVDMQMTRAAEPLTKVNIKFQLGLNEDLAATAIWGSQQAELRGEGKYDGVFGLWYGKGPGVDRSGDVMRHANMAGTSPHGGVIMAMGDDHTGESSTTLHQSDWAMLDAYMPIVSPAGVQEILDYGLYAYELSRFSGLWVGLKTMKDTIEVTSVVEADPFEAQFVRPEVPMPPEGLNIMLGETPQQQEARVIDYKRHAAEAFARANKIDKRMHGKAGAKIGIVAAGKNWLDVQHALSLLGVDEAEAEKLGITTYKIGQVWPLDMASFHEWAEGLELIIVVEEKRKLIEVQVKEAIFDDRRGRRVYGWHKGDEHSANKEEIFPTRADLNPILIAEKLGNVFVEEGCASSKVTSGLEALIEAKKADNAPEIAARLPYFCSGCPHNSSTKVPEGSRAYAGIGCHYMVQWMDRETVGFTQMGGEGANWVGEAPFSTRGHVFQNLGDGTYNHSGVQAIRFALLAGTNITYKILYNDAVAMTGGQGNDGGLTADQITRELLAMGVKDVTVVYDDKEDVDPAKFPKGIPLHERAELQQVQERLSKVEGVTAIVYIQTCAAEKRRRRKRNLFPDPDKRVFINTDVCEGCGDCGVQSNCVSIVPVETELGRKRAIDQSSCNKDFSCVNGFCPSFVTIEGAKIRKEATASIDIPDLPQPDLPQIEGTHNVVITGVGGTGVVTIGAVLAMAAHIDGKGAGMMEMAGLAQKGGAVHIHCRLANKPSDISAIRVATGEADALIGGDLVVSAGAKTIGLMKTGRTKGVVNSHEIITGDFTRDTEFKLPSDQLKLSLEARLRDDLAMFDASDLAKALMGDSIYSNMMIFGAVWQMGAIPISFEAILHAITLNGAAVERNKQAFEYGRWAFLHPDEAAKVLTPNVVALPKSLDEKIAFRADHLVKYQSKRLAKRYTKRLAQISDPVLKEAVALGYHKLLSYKDEYEVARLLKDTEAKARETFDGDLKLTHHMAPPVLSKVGPNGRPVKKEYGAMTARMFPILARFKRLRGTWLDVFGYTAERKMERALIKEYEADLKEILTAVRDDTKDAAVSWAKLPMEIRGFGPVKEANARAAAKRREEYLAVLRAKPMEMAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LVI8</accession>
    <name>A0A1M5LVI8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_0498</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69016.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0498"/>
    <dbReference type="EnsemblBacteria" id="SHG69016">
        <property type="protein sequence ID" value="SHG69016"/>
        <property type="gene ID" value="SAMN05444003_0498"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029151">
        <property type="entry name" value="Sensor-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017055">
        <property type="entry name" value="Sig_transdc_His_kinase_DctB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036431">
        <property type="entry name" value="STHK_DctB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103190">
        <property type="entry name" value="SSF103190"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="10" id="KW-0418">Kinase</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="287"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="9">
        <location>
            <begin position="367"/>
            <end position="577"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="7">
        <location>
            <begin position="314"/>
            <end position="358"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG69016.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="584" mass="64271" checksum="7BA73697E4A8AD69" modified="2017-03-15" version="1">MSETSSVRRPYRFGGWRLRAVVIAITTIAVLVIYASNQLLTQRFTESTRNRSEVRLTFYVASLMAELQRNSIVPQLLSRDPELIEALESGDYSLSTARLLSFVDEIGAASLMLLDVDGRTVAATDRNRLGENHKKEPYFINTIRTNQSTFTTSPLEGGGFGFTYARKIASAGDTLGVIAVQVDIPKLERNWAGVSDAVFVEDSEGTIIMSTEPTWRGLNEEEAIALRPVPTAIERAWRATQGWGGLPVDAYLAGEAVLRRDVRVPFQGWRMVSYTAYSSVRDRVNTILALEIMGFAVLLAFVFWISSRSSASRVALFQRESAELRQLNQRLQREIAERKRAEKNLEVAEQTIAQSSKLAALGEMSAAVSHELNQPLAAMKTYLAGARLLLTRKRSDEALSSFQRIDDLIERMGAITRQLKSYARKGSEAFEPVDTRDAVSTALSMMEPQLKSRHVQITRTLPDQPAMILGDRLRLEQVIINLLRNALDATSAVDDPEVEVLVAVGDTVTLTVRDNGAGIENLDELFEPFYTTKEPGDGVGLGLAISSGIVNDLGGRLTARNGTKGGAVFEVKLPVLTSEIAVAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LWF1</accession>
    <name>A0A1M5LWF1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0513</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69341.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899038.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG69341">
        <property type="protein sequence ID" value="SHG69341"/>
        <property type="gene ID" value="SAMN05444003_0513"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG69341.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="115" mass="12575" checksum="2F539D46F3EE5824" modified="2017-03-15" version="1">MSFQYKSAAFATVFALGLAGCVEQNASSDGFNRNVLINNQTGETIWRFYGSRVSTNSWEEDILGSTVLGNGRSVSINFDDGTGACNFDMKAEFQDGRSIERYNVNVCTAASVTFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M1G4</accession>
    <name>A0A1M5M1G4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0591</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG71020.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899147.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0591"/>
    <dbReference type="EnsemblBacteria" id="SHG71020">
        <property type="protein sequence ID" value="SHG71020"/>
        <property type="gene ID" value="SAMN05444003_0591"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.140.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010415">
        <property type="entry name" value="LpxI_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043167">
        <property type="entry name" value="LpxI_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041255">
        <property type="entry name" value="LpxI_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06230">
        <property type="entry name" value="LpxI_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17930">
        <property type="entry name" value="LpxI_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LpxI_N" evidence="2">
        <location>
            <begin position="2"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="domain" description="LpxI_C" evidence="1">
        <location>
            <begin position="130"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF06230"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17930"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG71020.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="291" mass="30822" checksum="66117D529380E430" modified="2017-03-15" version="1">MIALIAGTGDLPSEVFKALTAKGEAPLVCAMEGFVPDLNPDITFRIEHLGSLLETLATLGIKRVCMAGAVKRPNIDPTQIDERTLPLVPRVQSAMALGDDGTLREIIAILEEFGMQVVGAAELVPELLPPEGVLTKAQPNNTMDANAMLGVQTVERMGVADSGQACVIKDRRILAEEGPDGTDAMIRRFVPTHSDAQGFGPLGMIDDLVSASADWLTGIAGTGKGAMLYKAPKPQQDRRADLPVIGPETALVAAEAGFAGIIIEQGGVMVLDRETVVQTLDANDMFLWVRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M584</accession>
    <name>A0A1M5M584_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Threonine dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0644</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72406.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899221.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0644"/>
    <dbReference type="EnsemblBacteria" id="SHG72406">
        <property type="protein sequence ID" value="SHG72406"/>
        <property type="gene ID" value="SAMN05444003_0644"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="PLP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="Trypto_synt_PLP_dependent"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="SSF53686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PALP" evidence="3">
        <location>
            <begin position="22"/>
            <end position="309"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG72406.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="323" mass="34991" checksum="89EC088A69BC63BE" modified="2017-03-15" version="1">MKDIVENIPTYEDMLEAHERIKPHIRRTPIRTSNYLNELTGAELFFKCENFQEPGAFKVRGATNAVFGLDDDQAKRGVATHSSGNHASCLSYAAMLRGIPCNVVMPSTAPQAKKDTVRRYGGKITECEPSTSAREATFAKVQAETGGDFVHPYNDPRVIAGQGTCAKEFMEQTGGLDIAMAPIGGGGMVSGTCLTLSTLAPETQIIAAEPEQADDAMRSFKAGYIIADDAPKTIADGLLVPLKERTWHFVSNHVTDILTASEEEIIDAMKLTWKHLRIVMEPSSAVPLATVLKNTDRFAGKRVGIIITGGNVDLDKLPWTLGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M5R8</accession>
    <name>A0A1M5M5R8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">30S ribosomal protein S2</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpsB</name>
        <name evidence="8" type="ORF">SAMN05444003_0652</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the universal ribosomal protein uS2 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72581.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899233.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0652"/>
    <dbReference type="EnsemblBacteria" id="SHG72581">
        <property type="protein sequence ID" value="SHG72581"/>
        <property type="gene ID" value="SAMN05444003_0652"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015935">
        <property type="term" value="C:small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01425">
        <property type="entry name" value="RPS2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00291_B">
        <property type="entry name" value="Ribosomal_S2_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001865">
        <property type="entry name" value="Ribosomal_S2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005706">
        <property type="entry name" value="Ribosomal_S2_bac/mit/plastid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018130">
        <property type="entry name" value="Ribosomal_S2_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023591">
        <property type="entry name" value="Ribosomal_S2_flav_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12534">
        <property type="entry name" value="PTHR12534"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00318">
        <property type="entry name" value="Ribosomal_S2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00395">
        <property type="entry name" value="RIBOSOMALS2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52313">
        <property type="entry name" value="SSF52313"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01011">
        <property type="entry name" value="rpsB_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00962">
        <property type="entry name" value="RIBOSOMAL_S2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00963">
        <property type="entry name" value="RIBOSOMAL_S2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 6" id="KW-0689">Ribosomal protein</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="245"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00016777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG72581.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="266" mass="28482" checksum="DAC57D92A386B16A" modified="2017-03-15" version="1">MALPEFTMRQLLEAGVHFGHQTARWNPKMQNYIYGSRNGIHIMDLTQTVPMLDQALQVIRDTVAKGGRILFVGTKRQAAKPIAEAAEKSAQYYMNHRWLGGTLTNWQTVSQSISRLRAIEEAAATGFAGLTKKERLGMEREQGKLQASLGGIAEMGGTPDLLFVIDVNKEDLAIAEAKKLGIPVVAVVDTNCTPEGVDYVIPGNDDAARAIALYCDLAARAALDGMSAQLGAAGVDMGAMEDVAEELPAEEAPTEEAAAEEAPAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M5X5</accession>
    <name>A0A1M5M5X5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ornithine cyclodeaminase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0642</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72349.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899217.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0642"/>
    <dbReference type="EnsemblBacteria" id="SHG72349">
        <property type="protein sequence ID" value="SHG72349"/>
        <property type="gene ID" value="SAMN05444003_0642"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1780.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003462">
        <property type="entry name" value="ODC_Mu_crystall"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023401">
        <property type="entry name" value="ODC_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13812">
        <property type="entry name" value="PTHR13812"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02423">
        <property type="entry name" value="OCD_Mu_crystall"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001439">
        <property type="entry name" value="CryM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG72349.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="321" mass="33845" checksum="B54FADC6704CB9F3" modified="2017-03-15" version="1">MIIVPEREIAGLMTRKAAFDAVEKVFAAMSAGDAYNFPVVREAIGHEDALYGFKGGFDQAGLTLGLKAGGYWPNNLEKRNLINHQSTVFLFDPDTGKAKAMVGGNLLTALRTAAASSVSIKHLARKDAKVIGMVGAGHQATFQLRAALEQRDFEKVIGWNLHPEMLPNIEKVAEEAGLPFEAVDLSGMTEADVIISITSSFAPSLMADHVSSGTHIACMGTDTKGKKEVEAALLETATVFTDEVAQSISIGEAQHAIAEGLISQNDVNELGAVINGTHAGRIDEDQITLFDGTGVGLQDLAVAASVVDLAAAKGIAIEVDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MC43</accession>
    <name>A0A1M5MC43_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Aldehyde dehydrogenase (NAD+)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_0752</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74836.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899411.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0752"/>
    <dbReference type="EnsemblBacteria" id="SHG74836">
        <property type="protein sequence ID" value="SHG74836"/>
        <property type="gene ID" value="SAMN05444003_0752"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016160">
        <property type="entry name" value="Ald_DH_CS_CYS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00070">
        <property type="entry name" value="ALDEHYDE_DEHYDR_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="5">
        <location>
            <begin position="15"/>
            <end position="476"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="253"/>
        </location>
    </feature>
    <feature type="active site" evidence="3">
        <location>
            <position position="287"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG74836.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="492" mass="53154" checksum="FF8D3BB5B674925F" modified="2017-03-15" version="1">MSKNRHYQLYIDGAWCEGSERQTMTSQNPATGRDWASFACASPDDVDRAISAARRVLDDPEWRDMTQTNRGKLLYRLAELIEENAAHLGQIETTDSGKLLAETSAQTAYVADYYRYFAGLADKIEGAVLPIDKPDMHVFTRREPLGVVVAIVPWNAQMFLTATKVGPALAAGCSVVLKASEIAPAPMLEFAKLVEQAGFPKGVVSVITGDAENCAIPLTRHPDVDRIAFTGGPETARHVVRNSAENFAVTSLELGGKSPILVFEDADLEGAANGLIAGNFGASGQSCVAGSRGIVHRSILNDLATRIQEKMADVTIGDPLEAATRIGPLCTKAQVDKIKTMLSKATSQGAEIRFGGYQPDRDGNFFAPTLVTCPNTDIETLKVEMFGPVMSLIPFDTEEEAITIANDTPFGLGSGVFTQNVARAHRVSSRIKAGICWVNTYRAISPIAPFGGFNQSGYGREAGVDSIHDYTRTKTVWLNTSDQPMANPFIMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5ME26</accession>
    <name>A0A1M5ME26_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative spermidine/putrescine transport system substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0757</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial solute-binding protein 1 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899416.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0757"/>
    <dbReference type="EnsemblBacteria" id="SHG74953">
        <property type="protein sequence ID" value="SHG74953"/>
        <property type="gene ID" value="SAMN05444003_0757"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006059">
        <property type="entry name" value="SBP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13416">
        <property type="entry name" value="SBP_bac_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0574">Periplasm</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012251667" evidence="4">
        <location>
            <begin position="22"/>
            <end position="362"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG74953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="362" mass="39715" checksum="E67122199552CC28" modified="2017-03-15" version="1">MKLSTSILAIAAASVAGMATAQEMTIVSWGGAYTESQKRAYHDPYSTNTGVTIINDDSAAEAVAKLRAMNEAGNVTWDVVDVVAADAIRLCDEGLALEINADEQLAPAPDGTPASEDFGDLIVSDCFIPQIVYSTTFGYRTDLVGDTPPTDVCAVFDTEAYPGMRSLEKRPINNMEWALICDGVAFEDVYDVLETEEGQEQALAKLDTIKDSVIWWSAGADTPQLLADGEVVMGSTYNGRLFSLIEEQNQPVAMLWDAQVFDLDGWIIPTGLSEERTQRALDYVYFATDTQRLADQAKYISYGPARASSAPLVGTHADLGIEMAPHMPTDPENSKRTFLYNYEFWADYRDDIDAKFQAWLSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MFQ0</accession>
    <name>A0A1M5MFQ0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">50S ribosomal protein L32</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpmF</name>
        <name evidence="7" type="ORF">SAMN05444003_0810</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the bacterial ribosomal protein bL32 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76150.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899488.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0810"/>
    <dbReference type="EnsemblBacteria" id="SHG76150">
        <property type="protein sequence ID" value="SHG76150"/>
        <property type="gene ID" value="SAMN05444003_0810"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00340">
        <property type="entry name" value="Ribosomal_L32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002677">
        <property type="entry name" value="Ribosomal_L32p"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044957">
        <property type="entry name" value="Ribosomal_L32p_bact"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011332">
        <property type="entry name" value="Ribosomal_zn-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35534">
        <property type="entry name" value="PTHR35534"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01783">
        <property type="entry name" value="Ribosomal_L32p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57829">
        <property type="entry name" value="SSF57829"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01031">
        <property type="entry name" value="rpmF_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 7" id="KW-0689">Ribosomal protein</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021233"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00340"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG76150.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="68" mass="7573" checksum="B661D71239CB7CA8" modified="2017-03-15" version="1">MAVQQNKVSKSRRNNRRAHDALVAANPQECENCGELKRPHHVCPSCGHYASREIVAMTDDIDLDEDAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MGE6</accession>
    <name>A0A1M5MGE6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MerR HTH family regulatory protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0814</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76257.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899493.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0814"/>
    <dbReference type="EnsemblBacteria" id="SHG76257">
        <property type="protein sequence ID" value="SHG76257"/>
        <property type="gene ID" value="SAMN05444003_0814"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000551">
        <property type="entry name" value="MerR-type_HTH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13411">
        <property type="entry name" value="MerR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00422">
        <property type="entry name" value="HTH_MERR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50937">
        <property type="entry name" value="HTH_MERR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH merR-type" evidence="1">
        <location>
            <begin position="10"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG76257.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="193" mass="20700" checksum="54811600A02B2E75" modified="2017-03-15" version="1">MAKAPDAFRTISEVAEALHTPAHVLRFWESKFSQIKPVKRAGGRRYYRPDDIALLAGIKHLLHEQGLTIKGAQKLLRENGVKHVASLVGPPIPTEEADTGATPIVESPAPAPEPEVAEAIESAVTPLKVVSDPAPEPSIDLDALTPAEMPSDMPPRWFDASGKLDATVVKGNADAILPLLERLEAVRARMSAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MJN8</accession>
    <name>A0A1M5MJN8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Maltose ABC transporter ATP-binding protein /trehalose ABC transporter ATP-binding protein /sucrose ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0849</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899549.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG77129">
        <property type="protein sequence ID" value="SHG77129"/>
        <property type="gene ID" value="SAMN05444003_0849"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008643">
        <property type="term" value="P:carbohydrate transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03301">
        <property type="entry name" value="ABC_MalK_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015855">
        <property type="entry name" value="ABC_transpr_MalK-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040582">
        <property type="entry name" value="OB_MalK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17912">
        <property type="entry name" value="OB_MalK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="6">
        <location>
            <begin position="4"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="37"/>
            <end position="44"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG77129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="362" mass="39270" checksum="65D3807F7DE73E77" modified="2017-03-15" version="1">MADLKLTDVAKTYGGTVDVLKNINLDIKQGELIVFVGPSGCGKSTLLRMIAGLEKITGGTLEIDGQVVNDIPPAQRGIAMVFQSYALYPHMTVRDNMSFALKLAKKSKAEIDEAVSRAAKILQLEDYLDRLPKALSGGQRQRVAIGRSIVRDPKVYLFDEPLSNLDAALRVATRIEIAQLKESMPESTMIYVTHDQVEAMTLASRIVVLANKGIAQVGSPLELYERPKNEFVAQFIGSPSMNLLPGEIVETGEQTTIKLAGGGMAVSAVPTQEADKGLKVNVGARPEDMVETDGDFVFEGKVDIIEALGEVTLLYFEKDGDADPVIGKLPGIHGDLRGKTVRLTVAPEKVQVFHNGTSLYYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MJS0</accession>
    <name>A0A1M5MJS0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0864</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77465.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899569.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0864"/>
    <dbReference type="EnsemblBacteria" id="SHG77465">
        <property type="protein sequence ID" value="SHG77465"/>
        <property type="gene ID" value="SAMN05444003_0864"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd06150">
        <property type="entry name" value="YjgF_YER057c_UK114_like_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035959">
        <property type="entry name" value="RutC-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006175">
        <property type="entry name" value="YjgF/YER057c/UK114"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035709">
        <property type="entry name" value="YoaB-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47328">
        <property type="entry name" value="PTHR47328"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01042">
        <property type="entry name" value="Ribonuc_L-PSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55298">
        <property type="entry name" value="SSF55298"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG77465.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="115" mass="12172" checksum="C57D1031BC33C008" modified="2017-03-15" version="1">MSDITRIESGARMSQVVIHNGIAYLAGQVGAEGASVTEQTEAVLASVDRLLAEAGTDKTKLLTAQIWVADITDFAEMNAVWDAWVAPGCAPARWTGEAKLATPRFKVEVIVTAAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MKB2</accession>
    <name>A0A1M5MKB2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Tripartite ATP-independent transporter, DctQ component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0871</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77627.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899575.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0871"/>
    <dbReference type="EnsemblBacteria" id="SHG77627">
        <property type="protein sequence ID" value="SHG77627"/>
        <property type="gene ID" value="SAMN05444003_0871"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="89"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="128"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="174"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="212"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="283"/>
            <end position="305"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG77627.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="339" mass="38484" checksum="B6F34680CBBC49C8" modified="2017-03-15" version="1">MEEEIACSGFFRANAEDTISCLEKFQESGGIQFVAGGLVEAPYNLVAALSNPSSWLGWLGHVSLDQKIQDLEAAQSLIRFVYYGASWEFFFVLFFIFLVTTIIGLFRNSFMWACVRGLEGFANGIGRFFAWAGLLMVLQQIVIIFMQRVFAVSEISIGLGKTVTYDVSWWSEELKFYNAMIVCMCVSYTFVQGGHVRVDLVYSAVKFRTKRLIDMFGSIVFMIPAALLTYFYGWFFLWRHMVTPKLSASDASKDLDSLLNKARALKFNVETIGFSPNGFNAYFLFKVLLVAFTILVILQAVAFFYRSYLERKEGEESEGKYLDKDQLGDPQAELVAEIH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MM47</accession>
    <name>A0A1M5MM47_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Peptidyl-prolyl cis-trans isomerase</fullName>
            <shortName evidence="3">PPIase</shortName>
            <ecNumber evidence="3">5.2.1.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0887</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 3">PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>[protein]-peptidylproline (omega=180) = [protein]-peptidylproline (omega=0)</text>
            <dbReference type="Rhea" id="RHEA:16237"/>
            <dbReference type="Rhea" id="RHEA-COMP:10747"/>
            <dbReference type="Rhea" id="RHEA-COMP:10748"/>
            <dbReference type="ChEBI" id="CHEBI:83833"/>
            <dbReference type="ChEBI" id="CHEBI:83834"/>
            <dbReference type="EC" id="5.2.1.8"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 3">Belongs to the cyclophilin-type PPIase family.</text>
    </comment>
    <dbReference type="EC" id="5.2.1.8" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77989.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900412.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0887"/>
    <dbReference type="EnsemblBacteria" id="SHG77989">
        <property type="protein sequence ID" value="SHG77989"/>
        <property type="gene ID" value="SAMN05444003_0887"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000413">
        <property type="term" value="P:protein peptidyl-prolyl isomerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.100.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029000">
        <property type="entry name" value="Cyclophilin-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024936">
        <property type="entry name" value="Cyclophilin-type_PPIase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002130">
        <property type="entry name" value="Cyclophilin-type_PPIase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044666">
        <property type="entry name" value="Cyclophilin_A-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45625">
        <property type="entry name" value="PTHR45625"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00160">
        <property type="entry name" value="Pro_isomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001467">
        <property type="entry name" value="Peptidylpro_ismrse"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00153">
        <property type="entry name" value="CSAPPISMRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50891">
        <property type="entry name" value="SSF50891"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50072">
        <property type="entry name" value="CSA_PPIASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0697">Rotamase</keyword>
    <feature type="domain" description="PPIase cyclophilin-type" evidence="4">
        <location>
            <begin position="18"/>
            <end position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002388"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU363019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG77989.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="168" mass="18146" checksum="E7F1385E2C2A2DE5" modified="2017-03-15" version="1">MADIKDPENTIIMTLKDGDVVIELLPDVAPAHCERMKELARSGAYDNVCFHRVIDGFMAQSGDVANGNMENNFNIGRAGTGGSDMPDLPAEFSKIPHARGSLGAARSANPNSANSQFFINFKDNDFLNGQYTVYGQVISGMEHVDAITRGEPPMNPDRMISVKVAADV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MNA2</accession>
    <name>A0A1M5MNA2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Polyisoprenoid-binding protein YceI</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0905</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78399.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900414.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0905"/>
    <dbReference type="EnsemblBacteria" id="SHG78399">
        <property type="protein sequence ID" value="SHG78399"/>
        <property type="gene ID" value="SAMN05444003_0905"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.128.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007372">
        <property type="entry name" value="Lipid/polyisoprenoid-bd_YceI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036761">
        <property type="entry name" value="TTHA0802/YceI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04264">
        <property type="entry name" value="YceI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00867">
        <property type="entry name" value="YceI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101874">
        <property type="entry name" value="SSF101874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012431942" evidence="1">
        <location>
            <begin position="22"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="domain" description="YceI" evidence="2">
        <location>
            <begin position="25"/>
            <end position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00867"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG78399.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="192" mass="20395" checksum="5276FEABFEEB1012" modified="2017-03-15" version="1">MKHLIAATALGLSAVATQATAAPEAYILDPSHSQIIFNYNHLGFSTTYGMFSGFEGEIMFDQDDPAASSVSVSMPVMSMFTGWEARDGHFMSGDFFGASEGDLVTFTSTGIEVTGDNTAMITGDLSMNGVTKSVVLDAKLNQVGEHPMANTPWAGFDATTTILRSDFDVGNFAPFVSDEVNVQISIEAQKAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MRA6</accession>
    <name>A0A1M5MRA6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Sarcosine oxidase subunit delta</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0970</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79736.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899716.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0970"/>
    <dbReference type="EnsemblBacteria" id="SHG79736">
        <property type="protein sequence ID" value="SHG79736"/>
        <property type="gene ID" value="SAMN05444003_0970"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008115">
        <property type="term" value="F:sarcosine oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046653">
        <property type="term" value="P:tetrahydrofolate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2270.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006279">
        <property type="entry name" value="SoxD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038561">
        <property type="entry name" value="SoxD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04267">
        <property type="entry name" value="SoxD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG79736.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="106" mass="12101" checksum="B01D277A4C3A3549" modified="2017-03-15" version="1">MLILRCPYCGVDVDETDLHGGGEAHLKRFGPGSTDDEFHDYLFMRENPKGVHFERWQHSYGCGKWFLAARCTATLEVFGTYPAQTTEPPKEVVEAIKAKRPNWEVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MSZ7</accession>
    <name>A0A1M5MSZ7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1007</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80494.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899750.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1007"/>
    <dbReference type="EnsemblBacteria" id="SHG80494">
        <property type="protein sequence ID" value="SHG80494"/>
        <property type="gene ID" value="SAMN05444003_1007"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020308">
        <property type="entry name" value="Uncharacterised_Ynq1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17272">
        <property type="entry name" value="DUF5337"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="15"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="45"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG80494.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="72" mass="8204" checksum="EEFA2FE4389A2D74" modified="2017-03-15" version="1">MTDNHTPETQKEGRTIAITIAIAGLLSILAPNIVETLGLEPRYEILLYLFSLAAFFWALVVTWKLWQKTRSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MT97</accession>
    <name>A0A1M5MT97_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1013</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80610.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG80610">
        <property type="protein sequence ID" value="SHG80610"/>
        <property type="gene ID" value="SAMN05444003_1013"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="39"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="62"/>
            <end position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG80610.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="93" mass="10271" checksum="C598879294571490" modified="2017-03-15" version="1">MDQPFTQVFNAATSWTLAGLIFLLVCVFPARVIQKRHGYSNWVLAWVLVALAFLIASQFVVLIAFAFVPVLVPLVLLWAFALSTPKMTSEASS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MTF8</accession>
    <name>A0A1M5MTF8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1011</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80568.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899754.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG80568">
        <property type="protein sequence ID" value="SHG80568"/>
        <property type="gene ID" value="SAMN05444003_1011"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG80568.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="116" mass="11509" checksum="1AB9C50CF4313AA2" modified="2017-03-15" version="1">MMKQIALVSGFAALSACSGGLEVPDLRGAGEGLFGSGSDAAVEDAAPALTAKERLVAAVEAQGCVIDPTTINAVLASAQLSTDDLQTVVPELEAEGRIVGAGETALRIVSANCPAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MUS6</accession>
    <name>A0A1M5MUS6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">NADH-quinone oxidoreductase subunit B</fullName>
            <ecNumber evidence="9">7.1.1.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">NADH dehydrogenase I subunit B</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">NDH-1 subunit B</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">nuoB</name>
        <name evidence="12" type="ORF">SAMN05444003_1015</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>a quinone + 5 H(+)(in) + NADH = a quinol + 4 H(+)(out) + NAD(+)</text>
            <dbReference type="Rhea" id="RHEA:57888"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="9">Binds 1 [4Fe-4S] cluster.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">NDH-1 is composed of 14 different subunits. Subunits NuoB, C, D, E, F, and G constitute the peripheral sector of the complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell membrane</location>
            <topology evidence="9">Peripheral membrane protein</topology>
            <orientation evidence="9">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9 10">Belongs to the complex I 20 kDa subunit family.</text>
    </comment>
    <dbReference type="EC" id="7.1.1.-" evidence="9"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80649.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1015"/>
    <dbReference type="EnsemblBacteria" id="SHG80649">
        <property type="protein sequence ID" value="SHG80649"/>
        <property type="gene ID" value="SAMN05444003_1015"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008137">
        <property type="term" value="F:NADH dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048038">
        <property type="term" value="F:quinone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01356">
        <property type="entry name" value="NDH1_NuoB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006137">
        <property type="entry name" value="NADH_UbQ_OxRdtase-like_20kDa"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006138">
        <property type="entry name" value="NADH_UQ_OxRdtase_20Kd_su"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01058">
        <property type="entry name" value="Oxidored_q6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01957">
        <property type="entry name" value="nuoB_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01150">
        <property type="entry name" value="COMPLEX1_20K"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 9 10" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="1 9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 9 10" id="KW-0408">Iron</keyword>
    <keyword evidence="9 10" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="4 9 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 9 10" id="KW-0520">NAD</keyword>
    <keyword evidence="3 9" id="KW-0874">Quinone</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-1278">Translocase</keyword>
    <keyword evidence="9" id="KW-0813">Transport</keyword>
    <keyword evidence="7 9" id="KW-0830">Ubiquinone</keyword>
    <feature type="domain" description="Oxidored_q6" evidence="11">
        <location>
            <begin position="55"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="55"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="56"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="120"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="150"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022719"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01356"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU004464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF01058"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG80649.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="176" mass="19274" checksum="90AA9A8AD472D618" modified="2017-03-15" version="1">MGVMTGTQVGADKEAATSALNAELQDKGFLVTSTADMINWARTGSLHWMTFGLACCAVEMIHTSMPRYDLERFGTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGILQLQRKIRRTGTIVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MUT5</accession>
    <name>A0A1M5MUT5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">NADH dehydrogenase subunit E</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_1009</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>2Fe-2S cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49601"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the complex I 24 kDa subunit family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80533.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899752.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1009"/>
    <dbReference type="EnsemblBacteria" id="SHG80533">
        <property type="protein sequence ID" value="SHG80533"/>
        <property type="gene ID" value="SAMN05444003_1009"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03064">
        <property type="entry name" value="TRX_Fd_NuoE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.1590">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002023">
        <property type="entry name" value="NuoE-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042128">
        <property type="entry name" value="NuoE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041921">
        <property type="entry name" value="NuoE_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01958">
        <property type="entry name" value="nuoE_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01099">
        <property type="entry name" value="COMPLEX1_24K"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="240"/>
            <end position="283"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001939"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG80533.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="348" mass="38319" checksum="BE21817F5906FBF9" modified="2017-03-15" version="1">MLRRLYHDQPDVFAFTPANKAWAEGQITKYPEGRQASAVIPLLWRAQEQEGWLTRPAIEHVAEMLDMAYIRVLEVASFYFMFQLQPVGSVAHIQICGTLSCMICGAEDLVAVCKEKIAAKPHTLSEDGKFSWEEVECLGSCANAPMAQIGKDYYEDLTTAKLGELIDEMAAGRVPTPGPQNGRYAAEPLKGLTSLTEYDSGKTQYNASVQLATDLGDTIKRIDGTEVPLLTPWIAKASKPAAKKPATKKAPVKAAAPKPAAKKLAAKAKGPTKPRTMKAPRKAGADDLKLISGVGPKLEQTLNELGFWHFDQIAKWTKAEIEWVDDRLKFKGRITRDKWIAQAKKLAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MWK9</accession>
    <name>A0A1M5MWK9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1060</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81595.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG81595">
        <property type="protein sequence ID" value="SHG81595"/>
        <property type="gene ID" value="SAMN05444003_1060"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG81595.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="190" mass="20645" checksum="5571FE89927D58C6" modified="2017-03-15" version="1">MNLGQVGLIMCTCLASGTSTLADAARNVGQSETARQNSVFFYDIEWRVYCELGACAATEGHIWLVCFGGDLFLTAKEGVEIQHWYNRSAQPLPLAEPLDSFQVSTLLAEGKLVLLADLGDAVVQVARISTPPIERVLEAMLPHAACVPPGGPNSYRLLLDDQQRANQNQNVPVNKPQVEFAIRSQTGAFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N8F2</accession>
    <name>A0A1M5N8F2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, XRE family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1239</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85745.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899949.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1239"/>
    <dbReference type="EnsemblBacteria" id="SHG85745">
        <property type="protein sequence ID" value="SHG85745"/>
        <property type="gene ID" value="SAMN05444003_1239"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="13"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG85745.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="123" mass="14033" checksum="B401C1BF57893FAD" modified="2017-03-15" version="1">MKHPVDVYVGKRIRHRRWMNGTTQQQLAEAVGIKFQQIQKYETGMNRVSASRLWDISKVLDVQISYFFEGLNDSVEESNAGGGVAGDVLTDKEALELLRSYYAIPENQRRRLFDLARVLSDAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N8Q5</accession>
    <name>A0A1M5N8Q5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_1243</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the BI1 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85832.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899952.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1243"/>
    <dbReference type="EnsemblBacteria" id="SHG85832">
        <property type="protein sequence ID" value="SHG85832"/>
        <property type="gene ID" value="SAMN05444003_1243"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006214">
        <property type="entry name" value="Bax_inhibitor_1-related"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23291">
        <property type="entry name" value="PTHR23291"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01027">
        <property type="entry name" value="Bax1-I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="29"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="81"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="108"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="132"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="164"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="187"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="225"/>
            <end position="252"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU004379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG85832.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="256" mass="27720" checksum="F8F5C0D7E4BB7C9C" modified="2017-03-15" version="1">MAEYQTIRTAGGVRTAEIDEGLRAHMNKVYGTMSVGMVITALAAWALSGLAMSTDPTPYQIGANTYLTEFGATLWTSPLKWVIMFAPLVMVFAFGAMINRLSAAGAQLFFYAFATAMGASISWIFAVYTGFSIIQVFLITSIAFAGLSLWGYTTKKDISGWGSFLIMGVIGLIVASIVNIWLASPAIMFAVSMLGVLIFAGLTAYDTQNIKNTYLAHATSGDSEWLAKAAIMGALNLYLDFINMFMFLLQLFGSRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NBT3</accession>
    <name>A0A1M5NBT3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Protoheme IX farnesyltransferase</fullName>
            <ecNumber evidence="9">2.5.1.141</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Heme B farnesyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">Heme O synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">ctaB</name>
        <name evidence="10" type="ORF">SAMN05444003_1309</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>(2E,6E)-farnesyl diphosphate + H2O + heme b = diphosphate + Fe(II)-heme o</text>
            <dbReference type="Rhea" id="RHEA:28070"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
            <dbReference type="ChEBI" id="CHEBI:60530"/>
            <dbReference type="ChEBI" id="CHEBI:175763"/>
            <dbReference type="EC" id="2.5.1.141"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="9">Porphyrin-containing compound metabolism; heme O biosynthesis; heme O from protoheme: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Interacts with CtaA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell membrane</location>
            <topology evidence="9">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="9">Carbon 2 of the heme B porphyrin ring is defined according to the Fischer nomenclature.</text>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the UbiA prenyltransferase family. Protoheme IX farnesyltransferase subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.141" evidence="9"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86957.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900011.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1309"/>
    <dbReference type="EnsemblBacteria" id="SHG86957">
        <property type="protein sequence ID" value="SHG86957"/>
        <property type="gene ID" value="SAMN05444003_1309"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00834">
        <property type="reaction ID" value="UER00712"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008495">
        <property type="term" value="F:protoheme IX farnesyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048034">
        <property type="term" value="P:heme O biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd13957">
        <property type="entry name" value="PT_UbiA_Cox10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.357.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00154">
        <property type="entry name" value="CyoE_CtaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006369">
        <property type="entry name" value="Protohaem_IX_farnesylTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000537">
        <property type="entry name" value="UbiA_prenyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030470">
        <property type="entry name" value="UbiA_prenylTrfase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044878">
        <property type="entry name" value="UbiA_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43448">
        <property type="entry name" value="PTHR43448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01040">
        <property type="entry name" value="UbiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01473">
        <property type="entry name" value="cyoE_ctaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00943">
        <property type="entry name" value="UBIA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 9" id="KW-0350">Heme biosynthesis</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9 10" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="26"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="51"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="92"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="118"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="159"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="222"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="285"/>
            <end position="302"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000689"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG86957.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="311" mass="33234" checksum="EEB8A6D0450AD9E8" modified="2017-03-15" version="1">MSDVSVETGTYEAKMGDYFALLKPRVMSLVIFTALVGMLVAPVPVHPFVGFVAILCIAVGAGASGALNMWWDADIDAKMKRTVGRPIPSGRVQPGEALGIGLALSGFSVVLLALATNFFAAGLLAFTIFFYAVIYSMWLKRSTPQNIVIGGAAGAFPPMVGWAVATGGASIESVLMFALIFMWTPPHFWSLALFVKTDYGDAGVPMLNVTHGTRSTRNHILVYTFLLAPVAIGLGFTSIGGPIYLATAVVMNAWFLKGAYKVWKRDDADAEADKFKAERAVFKTSLYYLFAHFVALLVEGILRTTGAGGVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NCF5</accession>
    <name>A0A1M5NCF5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Tetratricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1329</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87254.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900025.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1329"/>
    <dbReference type="EnsemblBacteria" id="SHG87254">
        <property type="protein sequence ID" value="SHG87254"/>
        <property type="gene ID" value="SAMN05444003_1329"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012364166" evidence="2">
        <location>
            <begin position="21"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="106"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG87254.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="184" mass="19717" checksum="1B42835A12A52E6F" modified="2017-03-15" version="1">MRLILAATFSLILAACSQGGFDTSNDPLAAPGVAGESNIDGLIVGHRLMAAGEFELALKAYTRAAAQQGLNVDTLSALGSANLRLGRLGQAESLLRRATEEAPDFPAAWNNLGVILLEKGNYAEASEVFRRAFATDNGNSDQIRENLRLALANLDDPNYDPSQQNQEFKLVRRGQGDFVILTAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NCX0</accession>
    <name>A0A1M5NCX0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1332</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87305.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900028.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1332"/>
    <dbReference type="EnsemblBacteria" id="SHG87305">
        <property type="protein sequence ID" value="SHG87305"/>
        <property type="gene ID" value="SAMN05444003_1332"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG87305.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="437" mass="49187" checksum="E93AC996761EC447" modified="2017-03-15" version="1">MNMQVSNGVQAPPAPKRLEGMQLPLSMMRDILIKTMFRRNIEMVSDMSKIICLPIPVTQELMDLARSQLLVEATGTLNANSGNEMGYRLTDAGKSRALDALAQSEYFGAMPVPLDVYHEQIKRQSIRNISVSRERLTTAMGHLILPEDLLDNLGPAVGAGRSILMYGPPGNGKSSISNGIRDALGDKIYVPRAIEYSGQVITVYDPIVHSAAEEQVDDPNSLRRTSGRFDTRYVRCERPTVITGGELSLDMLDLVYNETARTYQAPLQLKSTGGIFIVDDLGRQAEPPQALVNRWIVPLEENKDILALQSGEKFEVPFDTLVIFSTNFHPNEIFDKAALRRIFYKIKIDGPNQENFLKIFAMVARKRQMPLDEGALIHLLNNRYPEIDNEYANYQPIFLIDQMISICEFEGIPNQMTPELIDRAWANMFVKEEVIVH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NFE9</accession>
    <name>A0A1M5NFE9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1384</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88248.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900076.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG88248">
        <property type="protein sequence ID" value="SHG88248"/>
        <property type="gene ID" value="SAMN05444003_1384"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="35"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG88248.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="59" mass="6538" checksum="E5DDBFFE46663C07" modified="2017-03-15" version="1">MEWIVFGFMGGLALIVAFIIGFALYRVNFGSDKDEANQGPNLQGTKNDAINTHDNMNNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NFX9</accession>
    <name>A0A1M5NFX9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Predicted secreted protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1391</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88365.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900081.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1391"/>
    <dbReference type="EnsemblBacteria" id="SHG88365">
        <property type="protein sequence ID" value="SHG88365"/>
        <property type="gene ID" value="SAMN05444003_1391"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009935">
        <property type="entry name" value="DUF1467"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07330">
        <property type="entry name" value="DUF1467"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="58"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG88365.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="92" mass="10255" checksum="DB818821531FC705" modified="2017-03-15" version="1">MGITSALVLYAVCWFMVFFIVLPLRMVTQGDEGQIVPGTHASAPADPQLKRKAKITTLWALGIWVILAAIIWSGVITVRDIDWFNRMSPPSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NGT4</accession>
    <name>A0A1M5NGT4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1412</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88774.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900098.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG88774">
        <property type="protein sequence ID" value="SHG88774"/>
        <property type="gene ID" value="SAMN05444003_1412"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="39"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="78"/>
            <end position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG88774.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="98" mass="10436" checksum="5034E0FBD8FCAD25" modified="2017-03-15" version="1">MMATRSRSRADFWSGFFAGTVLAAILIAMIPLVGLGLGLAALLTSIAPPVIVFAAVIDAIVGRYKIEGRTRWAATEQVAGFFFPIALVGVPGLYFYLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NHI4</accession>
    <name>A0A1M5NHI4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Molybdopterin or thiamine biosynthesis adenylyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1421</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88952.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900107.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1421"/>
    <dbReference type="EnsemblBacteria" id="SHG88952">
        <property type="protein sequence ID" value="SHG88952"/>
        <property type="gene ID" value="SAMN05444003_1421"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008641">
        <property type="term" value="F:ubiquitin-like modifier activating enzyme activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045886">
        <property type="entry name" value="ThiF/MoeB/HesA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000594">
        <property type="entry name" value="ThiF_NAD_FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035985">
        <property type="entry name" value="Ubiquitin-activating_enz"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10953">
        <property type="entry name" value="PTHR10953"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00899">
        <property type="entry name" value="ThiF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69572">
        <property type="entry name" value="SSF69572"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="29"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="59"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="domain" description="ThiF" evidence="2">
        <location>
            <begin position="105"/>
            <end position="338"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG88952.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="348" mass="37140" checksum="7239B6595FFED3FC" modified="2017-03-15" version="1">MIMVAAMAATLWGIGMAMGTPRQARWTMIGLLLVAVIAVQIILPDGHPLRENTGGDARLWGLLLGFAAIAFGYRMLFQMIKEKAQPAPEPPVRSDSFSETELDRYARHIVLREIGGPGQKALRNAKVLVIGAGGLGAPALQYLGAAGVGTIGVIDDDTVENANLQRQVIHADQRIGDPKVQSAADAIVAQNPFVDVKTYHRRLNAEIAEELFSEYDLILDGCDNFSTRYLVNETAVKLEKPLIAAALTQWEGQISLYDPSKGGPCYACVFPTAPDPSLVPSCAEAGVIGPLPGVIGSMMAVEAVKAITGAGDTLRGRMMIYDALYADVRTIALKPRADCPICDGKGAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NI33</accession>
    <name>A0A1M5NI33_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Amino acid/amide ABC transporter substrate-binding protein, HAAT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1432</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89188.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900117.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1432"/>
    <dbReference type="EnsemblBacteria" id="SHG89188">
        <property type="protein sequence ID" value="SHG89188"/>
        <property type="gene ID" value="SAMN05444003_1432"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028081">
        <property type="entry name" value="Leu-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13458">
        <property type="entry name" value="Peripla_BP_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peripla_BP_6" evidence="1">
        <location>
            <begin position="48"/>
            <end position="377"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG89188.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="394" mass="40148" checksum="E5288916CEEDEF08" modified="2017-03-15" version="1">MSHSVALPKFLIGKLFAILSFAWLVACEPVAIDTNANTGQRIDTSIPVQVALLVPGGGTEGSDQLIANDLESAARLAIGDLNGVDVDLRVYNTGSDPAQAATVARAAVDDGAKILLGPLFAESANAAGVAVAGDNVNVLAFSNNPAIAGGNVFVLGSTFENTANRLSNYAARNGIVRIGIVHGDDVAGQAGRNAIATALRANGSQLAGVESYPLSQQGIFTSVGQITSSLRANDAQAVFLTGGVTGDLPIIATALDDNGLGADEIQYIGLTRWNAVPQAMSLPSLQGGVFAIPDRALTASFESRFFEAYGATPHPLAGLAYDGIAAIGALVATGNPDALTKAALTTPQGFQGTNGVFRLLPNGLNERGLAIATLQEGQVVILEPAPRSFGSAGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NKF5</accession>
    <name>A0A1M5NKF5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1472</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90066.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900153.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1472"/>
    <dbReference type="EnsemblBacteria" id="SHG90066">
        <property type="protein sequence ID" value="SHG90066"/>
        <property type="gene ID" value="SAMN05444003_1472"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009915">
        <property type="entry name" value="NnrU_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07298">
        <property type="entry name" value="NnrU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="60"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="93"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="118"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="157"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="domain" description="NnrU" evidence="2">
        <location>
            <begin position="4"/>
            <end position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07298"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG90066.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="181" mass="19538" checksum="C38D31A519143E7D" modified="2017-03-15" version="1">MILITAGLLLWSAAHFWKRLAPDQRAGFGEKGKGIVALASVAAIVLMVIGYRGADGTFYWGRSTALVGINNLLMLFAFYLFASSGAKTRVTKLIRHPQLTAVVVWCVAHLLVNGDSPSFLLFGGLGVWAIAEMILINRAEGPKEAYHAVPIKKEVTAVIATLVVFSVVSAIHLWLGYNPFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NKR6</accession>
    <name>A0A1M5NKR6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">(3S)-malyl-CoA thioesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1473</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the HpcH/HpaI aldolase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90092.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900466.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1473"/>
    <dbReference type="EnsemblBacteria" id="SHG90092">
        <property type="protein sequence ID" value="SHG90092"/>
        <property type="gene ID" value="SAMN05444003_1473"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005000">
        <property type="entry name" value="Aldolase/citrate-lyase_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011206">
        <property type="entry name" value="Citrate_lyase_beta/mcl1/mcl2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_Kinase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040442">
        <property type="entry name" value="Pyrv_Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03328">
        <property type="entry name" value="HpcH_HpaI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015582">
        <property type="entry name" value="Cit_lyase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="SSF51621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HpcH_HpaI" evidence="6">
        <location>
            <begin position="7"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="68"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 5">
        <location>
            <position position="120"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="146"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005568"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR015582-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR015582-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF03328"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG90092.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="280" mass="29573" checksum="1B904E6A4EA39B44" modified="2017-03-15" version="1">MTHRPTRSALYIPGSRDRALDKARGLPVDVILFDLEDAVAPDEKAAARETLEEALAAGGYGPRYKVVRINGLDTDWGAADVAAVAEMACDAVLLPKVNSAADVEALAAQLPDVPIWAMMETPQGILNAAEIAAHPRLEGFVMGTNDLAKELNSRTRAAMRVSLQTCLLAARACAVIAIDGVYNAFKDEEGLRAECDEGRDFGFDGKSLIHPAQVAIANEVFGPSEAEIDLARRQIAAFEDAVAGGQGVAVVDGKIVENLHVETARATLAKAEAIATLEAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NNR5</accession>
    <name>A0A1M5NNR5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glutathione S-transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1493</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90573.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900170.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1493"/>
    <dbReference type="EnsemblBacteria" id="SHG90573">
        <property type="protein sequence ID" value="SHG90573"/>
        <property type="gene ID" value="SAMN05444003_1493"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006749">
        <property type="term" value="P:glutathione metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010987">
        <property type="entry name" value="Glutathione-S-Trfase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036282">
        <property type="entry name" value="Glutathione-S-Trfase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040079">
        <property type="entry name" value="Glutathione_S-Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004045">
        <property type="entry name" value="Glutathione_S-Trfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004046">
        <property type="entry name" value="GST_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00043">
        <property type="entry name" value="GST_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13417">
        <property type="entry name" value="GST_N_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00019">
        <property type="entry name" value="Glutathione_Transferase_(cytos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47616">
        <property type="entry name" value="SSF47616"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50405">
        <property type="entry name" value="GST_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50404">
        <property type="entry name" value="GST_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GST N-terminal" evidence="1">
        <location>
            <begin position="1"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="domain" description="GST C-terminal" evidence="2">
        <location>
            <begin position="86"/>
            <end position="216"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG90573.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="226" mass="24656" checksum="E88513A075B909CC" modified="2017-03-15" version="1">MGVALIGYPVSPFVRKVRVALETKGISYTLDPIVPYTEREKVLTVNPAGTVPVLIPGESAAPITESADVVAWSDQTVPSPAIIPKDPQLRARALDVQRFADGQMAQVFGGMMFGQRIVVPYYFGKAQGKEDMVQNAITQLAPPLLDTVANLIGDESFVARDFSVADIAMASWLRGARLAGFQLDEARWPMVAQWLGRCFDQPGFASVIASEEKTEVVRWARARYAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NR64</accession>
    <name>A0A1M5NR64_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1553</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91967.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900222.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1553"/>
    <dbReference type="EnsemblBacteria" id="SHG91967">
        <property type="protein sequence ID" value="SHG91967"/>
        <property type="gene ID" value="SAMN05444003_1553"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009531">
        <property type="entry name" value="DUF1150"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06620">
        <property type="entry name" value="DUF1150"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG91967.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="74" mass="7900" checksum="D3FDA901BB54A180" modified="2017-03-15" version="1">MQRKHELKALAGNMIYLKPVATSDLPDEVREDAGSLGTVFAVHNTEGEQVALVANEAIAADLAAQNDMQVVSVH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NTH2</accession>
    <name>A0A1M5NTH2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Hydroxyacylglutathione hydrolase</fullName>
            <ecNumber evidence="5">3.1.2.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Glyoxalase II</fullName>
            <shortName evidence="5">Glx II</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">gloB</name>
        <name evidence="7" type="ORF">SAMN05444003_1588</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>an S-(2-hydroxyacyl)glutathione + H2O = a 2-hydroxy carboxylate + glutathione + H(+)</text>
            <dbReference type="Rhea" id="RHEA:21864"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57925"/>
            <dbReference type="ChEBI" id="CHEBI:58896"/>
            <dbReference type="ChEBI" id="CHEBI:71261"/>
            <dbReference type="EC" id="3.1.2.6"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="5">Binds 2 Zn(2+) ions per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="5">Secondary metabolite metabolism; methylglyoxal degradation; (R)-lactate from methylglyoxal: step 2/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Monomer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the metallo-beta-lactamase superfamily. Glyoxalase II family.</text>
    </comment>
    <dbReference type="EC" id="3.1.2.6" evidence="5"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG92866.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900256.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1588"/>
    <dbReference type="EnsemblBacteria" id="SHG92866">
        <property type="protein sequence ID" value="SHG92866"/>
        <property type="gene ID" value="SAMN05444003_1588"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00619">
        <property type="reaction ID" value="UER00676"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004416">
        <property type="term" value="F:hydroxyacylglutathione hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019243">
        <property type="term" value="P:methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07723">
        <property type="entry name" value="hydroxyacylglutathione_hydrolase_MBL-fold"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01374">
        <property type="entry name" value="Glyoxalase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035680">
        <property type="entry name" value="Clx_II_MBL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032282">
        <property type="entry name" value="HAGH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017782">
        <property type="entry name" value="Hydroxyacylglutathione_Hdrlase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16123">
        <property type="entry name" value="HAGH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005457">
        <property type="entry name" value="Glx"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03413">
        <property type="entry name" value="GSH_gloB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Lactamase_B" evidence="6">
        <location>
            <begin position="13"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="56"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="58"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="60"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="61"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="112"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="131"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="169"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01374"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG92866.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="253" mass="27205" checksum="C4E2E434C22E1403" modified="2017-03-15" version="1">MPLELVTIPCLEDNYAYLLHNAETGETALVDAPEPGPIQAELDKRGWALTDIILTHHHWDHIDGLEPLRGNARVIGAAADAHRLPELDLPVAEGDTPTVLGESVQIFDVSGHTIGHIAIYFPEAGVAFTADSLMAMGCGRLFEGTPEQMWNSMLKLRTLPSETIIASGHEYTLGNANFAASLGETNNAVAERIGDVQTARATGQTTVPTTLALECATNPFLRADDPALKSAIGLPNGNDVDVFTEIRSRKDKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NUW4</accession>
    <name>A0A1M5NUW4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Oligopeptide transport system substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1603</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial solute-binding protein 5 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900269.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1603"/>
    <dbReference type="EnsemblBacteria" id="SHG93245">
        <property type="protein sequence ID" value="SHG93245"/>
        <property type="gene ID" value="SAMN05444003_1603"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030288">
        <property type="term" value="C:outer membrane-bounded periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030678">
        <property type="entry name" value="Peptide/Ni-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039424">
        <property type="entry name" value="SBP_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023765">
        <property type="entry name" value="SBP_5_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000914">
        <property type="entry name" value="SBP_5_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30290">
        <property type="entry name" value="PTHR30290"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00496">
        <property type="entry name" value="SBP_bac_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002741">
        <property type="entry name" value="MppA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01040">
        <property type="entry name" value="SBP_BACTERIAL_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012567572" evidence="3">
        <location>
            <begin position="25"/>
            <end position="543"/>
        </location>
    </feature>
    <feature type="domain" description="SBP_bac_5" evidence="4">
        <location>
            <begin position="83"/>
            <end position="466"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG93245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="543" mass="59718" checksum="12B655481D12BF86" modified="2017-03-15" version="1">MTLKSILTATTAVSLIAVGSAAWADGHATHPVTGETLASDQSFTYRDLDESPSIDPGTAEDSAGGDILRDLFEGLMNQAPDGTLVPGVATSFASSDDGLVYTFTLRDNAKWSNGDTVTAGDFEYAWKRAASPELASPYSWFIELMSLENASEVIAGDVDPSELGVTAIDDTTLEVRLTQPLPYFAQMTTHFTTFPVHQATIEAHGDDWTKPGNMVSNGAYVLSEHVPQEKLVRVRNESYWDNDATIIDSVTSLIINDEAVALTRYLAGELDRTDVPAGQFPRLQAEYPEQAVSVPLACSYYYMFNLRDGAPEEIQDANVRKALSLAIDRDIITENVLAGGQESAYTFTHWATAGFETPNIPMASMTQEERNAMAKELMAEAGYADGGLEIDLVYNTSESHKSVAIAVSQMWKQTLGVETTLANQEWQTFLEARSNGDYEVARGGWCADYNEASTFLDLMDSGSGYNDSKYVNAEVDALLAEAKTADNPQPNYDRVEEFIAQDTPIIPIYHYASVKMFAEDLKGWPFDNFQQNWYSRQLYKVAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PJX6</accession>
    <name>A0A1M5PJX6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DNA-binding transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1672</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH01799.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900494.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH01799">
        <property type="protein sequence ID" value="SHH01799"/>
        <property type="gene ID" value="SAMN05444003_1672"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd08417">
        <property type="entry name" value="PBP2_Nitroaromatics_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037402">
        <property type="entry name" value="YidZ_PBP2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="9"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH01799.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="312" mass="34533" checksum="D0F1636798969D18" modified="2017-03-15" version="1">MENFDVLRLDGHSLSVFLSVCETGSISKTAVAYDLNQSTISHTIDKVRAAVGDPLFVKAGRGIVPTEAALSLVPRVERLVAEIQGLAIPESYDPRKDNQPFALGIQTPAQLHDVKLLQVKLAKIAPNVRLEMKRAVPQNHIAQMLQEKEIDISFVINGHARSPFLNRTPYGQDELVVFYDPKVRGPIESVEDYAEATHGVVNFGGNSKTQIDIAFEKLGRERKIALVAPTTSMLGNLLAGTPAIATMPSRWASTVSRDLTFCKAPIDLPPIYYDIAWHRRNEHSGRIIWLRNLLDEVGRELYGEAAHAQKNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PLS6</accession>
    <name>A0A1M5PLS6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pimeloyl-ACP methyl ester carboxylesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1715</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02646.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900530.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1715"/>
    <dbReference type="EnsemblBacteria" id="SHH02646">
        <property type="protein sequence ID" value="SHH02646"/>
        <property type="gene ID" value="SAMN05444003_1715"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12697">
        <property type="entry name" value="Abhydrolase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="24"/>
            <end position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH02646.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="271" mass="30010" checksum="B564EA79A9653D29" modified="2017-03-15" version="1">MPSFSTADGINLYYTDEGNGLPVLALAGLTRNGRDFNHVAPHLPVRLIRLDYRGRGQSDWADPETYTIPQEAQDALALMDHLGLERAAILGTSRGGLIAMVLAATAKDRLLGVALNDIGPEIADKGLEVIKDYIGKRPLQATYTEVAAFRAKVWTHFQDVPMERWLAEVSNHYEEREDGLHLRYDPKLRDAVLKSAAPAPDLWPLFDALEGLPLALVRGVNSDLLTRACADEMTKRRPDMIRAEVPGRGHVPFLDEKEALAALTAWVEKLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PMJ5</accession>
    <name>A0A1M5PMJ5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, GntR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1735</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">In the C-terminal section; belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03025.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900545.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1735"/>
    <dbReference type="EnsemblBacteria" id="SHH03025">
        <property type="protein sequence ID" value="SHH03025"/>
        <property type="gene ID" value="SAMN05444003_1735"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="2">
        <location>
            <begin position="16"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH03025.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="490" mass="54462" checksum="B5460008CB87D25A" modified="2017-03-15" version="1">MAIPLETFFLDPSTEGTLQARIQQMVAQGILDGRFRRGEKLPSSRKMAQHLGVSRITVTLAYTELVADDYLSSRGRSGYFVSENAPEPPAFPARRSNRSSVDWSRAIGQRFAPVLGMDKPADWADYRYPFNYGQADPTLFDGANWRMCALQALGKRDFSSLTADYFDGDDPQLVEFIARQTLPRRGISAGPDEILVTMGAQNALWLTAQILLTQRRIAAIENPCYPALRSILLQSRCQLATVDVDEDGLVPAHLPEGTDVVFTTPSHQCPTAATMPITRRHELLDKAESEDFLIVEDDYEFEMAFLKPPSPSLKSLDKNGRVIYVGSFSKSLFPGLRLGYLVGPAQFIREARALRAAVFRHAPGHTQRTVSYFLSLGHYDALVRRMSRAYHDRRRVLDSALEKHGITVAGKGAYGGSSVWVKAPKPVDTVQLARRLREDGVLIEPGSPFFSGDEPPRNYFRLAYSSIPAERIEKGVSFIGKAIESELGNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PN04</accession>
    <name>A0A1M5PN04_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1732</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02959.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900542.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1732"/>
    <dbReference type="EnsemblBacteria" id="SHH02959">
        <property type="protein sequence ID" value="SHH02959"/>
        <property type="gene ID" value="SAMN05444003_1732"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH02959.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="158" mass="17400" checksum="1D4DBEEDF603078C" modified="2017-03-15" version="1">MTKDQPSPIRPTDDEARLLARTLLTEARFGALAVSLPDQTAPYVSRVATVAIEGAPHLLVSELSLHTKALTTHPDCSLLIGEPEDRGDPLTHPRMTLMARAEIADKASLKETWLEAIPKAKLYYDFTDFVMFRLTITKAHLNGGFGKAFHLEASDFAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PU73</accession>
    <name>A0A1M5PU73_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TIGR02302 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1853</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05405.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900646.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1853"/>
    <dbReference type="EnsemblBacteria" id="SHH05405">
        <property type="protein sequence ID" value="SHH05405"/>
        <property type="gene ID" value="SAMN05444003_1853"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012683">
        <property type="entry name" value="CHP02302_TM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13779">
        <property type="entry name" value="DUF4175"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="52"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="143"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="636"/>
            <end position="737"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="791"/>
            <end position="841"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="637"/>
            <end position="714"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="716"/>
            <end position="731"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="791"/>
            <end position="834"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH05405.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="877" mass="96839" checksum="6B9696654FBF4762" modified="2017-03-15" version="1">MQHLKRPVALTRFGMMAEQVVRAFWPLWSVIFVGLAPILFGWHETMSLEGLWTFFVVVFLALVGALVWGIRQFKWPSRQEAVDKVDAALPGRPIAAVADSQAIGSGDAASEAVWQAHMARMAERTKDAAAVEPDLRVADRDPYGLRFIALLFFVCALTFGSLFRITTVGESLSTDGPNLAAGPVWEGWVTPPAYTGKPTLYLNDIPPGPLPVPVGSEIALRLYGEVGALTVAETVSGRTEDLGAASDAQQEFVVAQSGEIAIEGENGAAWAVNVIEDQPPFVELTGPIEADALGEMSQPFRAEDDYGVVSGTAEIALDLGAVDRRHGLAIAPEARGPVVIDLPMPFSGDRSDFEELLIDDFSEHPFANLPVTITLSVQDEAEQMGVTEPERIILPGRRFFQPFARAIIEQRRDLLWSKDNGKRVVQIMKAIAHRPEGLFSNEVTFLRMRAITRRLDTFVENGFTDENRDEIVQALWDLAIQLEEGTLADARERLRRAQERLSEAMRNGASDEEIAELMNELREATNEYMQMLADQMDPNQNNTDQPQTSENSMEFTQDELQALMDRIEELMQEGRMAEAQQLMEQLNQLMENLQITQGQGGEGGPLTPGQQSMQDLADTLREQEELSDDAFRDLQEETNRGQQGQQGQQQSGQQPGQQQGREQGQLQPGQQNGQTGSGQEGEAGDQFGQQNQNGEGQGSGRADNSGQGGDEQSLADRQQALRDELERQQRVLPNLEGEAGEFARRSLEQAEGAMDGAEEALREGDLAEAIDRQAEAMNALRNGMRSLREALAQNENTEPGQGNQQGDATGRTQPNRTDPLGREVGNSGQFGTDENLLNGEDVYRRADELLGEIRRRSGEQSRPEVERDYLKRLLDRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PZP3</accession>
    <name>A0A1M5PZP3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Glutathione-dependent peroxiredoxin</fullName>
            <ecNumber evidence="3">1.11.1.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1920</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>a hydroperoxide + 2 glutathione = an alcohol + glutathione disulfide + H2O</text>
            <dbReference type="Rhea" id="RHEA:62632"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:30879"/>
            <dbReference type="ChEBI" id="CHEBI:35924"/>
            <dbReference type="ChEBI" id="CHEBI:57925"/>
            <dbReference type="ChEBI" id="CHEBI:58297"/>
            <dbReference type="EC" id="1.11.1.27"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the peroxiredoxin family. Prx5 subfamily.</text>
    </comment>
    <dbReference type="EC" id="1.11.1.27" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06673.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900701.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1920"/>
    <dbReference type="EnsemblBacteria" id="SHH06673">
        <property type="protein sequence ID" value="SHH06673"/>
        <property type="gene ID" value="SAMN05444003_1920"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004601">
        <property type="term" value="F:peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd03013">
        <property type="entry name" value="PRX5_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037944">
        <property type="entry name" value="PRX5-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013740">
        <property type="entry name" value="Redoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10430">
        <property type="entry name" value="PTHR10430"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08534">
        <property type="entry name" value="Redoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0049">Antioxidant</keyword>
    <keyword evidence="2 3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="1 3" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="3" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin" evidence="4">
        <location>
            <begin position="3"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU366011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH06673.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="163" mass="16877" checksum="880FB24D63D091A5" modified="2017-03-15" version="1">MTISTGAALPDAKLLTVGAEGPEAVSLGDKIKDKKVVIFGLPGAYTGVCTTAHVPSFIRTKDDFAAKGVDEIICVTVNDPFVCKAWSDSTGAGDAGISILGDADGEFTKAIGMDFTAPPAGLFGRSKRYTMLVDNGVVSILNEEESPGQCEISAGETLLDQMS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q196</accession>
    <name>A0A1M5Q196_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC-2 type transport system ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1972</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07692.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900744.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1972"/>
    <dbReference type="EnsemblBacteria" id="SHH07692">
        <property type="protein sequence ID" value="SHH07692"/>
        <property type="gene ID" value="SAMN05444003_1972"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="5"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="38"/>
            <end position="45"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH07692.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="308" mass="33704" checksum="6A223742C3E52BF0" modified="2017-03-15" version="1">MTSIVSVRDLKKSYAGGFEALSGVNLEIEKGEILALLGPNGAGKTTLISTICGISIPTSGTVRVGGHDVVTDFRAARNLIGLVPQEINLEPFETVMNTVRFSRGLFGKPRNDALIDQILKDLSLHDKRDSKIMMLSGGMKRRVLIAKALSHEPSILFLDEPTAGVDVELRKDMWDVVAKLKASGVTIILTTHYIEEAEAIADRVGIISKGSILLVEKKEDLMQRMGKKRLRIELSTPISELPQELADRGLEIAADGNALIHDYDTRSDRTGITALLKDLQNAGLKMTDLETQQSSLEDIFVDLVRETS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q302</accession>
    <name>A0A1M5Q302_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1999</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08151.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900761.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1999"/>
    <dbReference type="EnsemblBacteria" id="SHH08151">
        <property type="protein sequence ID" value="SHH08151"/>
        <property type="gene ID" value="SAMN05444003_1999"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="36"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH08151.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="90" mass="9930" checksum="959D5D780FC1E126" modified="2017-03-15" version="1">MPLWLEWWVWMSAALALATLEVIVPGYIFLGFAIGALVMGVLLLLGLTGLSLPLLLVIFAVLSLVAYLAMRKVFGLKTGQVKIWDRDIND</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q6D5</accession>
    <name>A0A1M5Q6D5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Chlorophyllide reductase subunit Z</fullName>
            <ecNumber evidence="8">1.3.7.15</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="14">Chlorin reductase subunit Z</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">SAMN05444003_2066</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Converts chlorophylls (Chl) into bacteriochlorophylls (BChl) by reducing ring B of the tetrapyrrole.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>3-deacetyl-3-(1-hydroxyethyl)bacteriochlorophyllide a + ADP + 2 oxidized [2Fe-2S]-[ferredoxin] + phosphate = 3-devinyl-3-(1-hydroxyethyl)chlorophyllide a + ATP + H(+) + H2O + 2 reduced [2Fe-2S]-[ferredoxin]</text>
            <dbReference type="Rhea" id="RHEA:48948"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:90791"/>
            <dbReference type="ChEBI" id="CHEBI:90792"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="1.3.7.15"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>3-deacetyl-3-vinylbacteriochlorophyllide a + ADP + 2 oxidized [2Fe-2S]-[ferredoxin] + phosphate = ATP + chlorophyllide a + H(+) + H2O + 2 reduced [2Fe-2S]-[ferredoxin]</text>
            <dbReference type="Rhea" id="RHEA:37051"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:83348"/>
            <dbReference type="ChEBI" id="CHEBI:83373"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="1.3.7.15"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ADP + bacteriochlorophyllide a + 2 oxidized [2Fe-2S]-[ferredoxin] + phosphate = 3-acetyl-3-devinylchlorophyllide a + ATP + H(+) + H2O + 2 reduced [2Fe-2S]-[ferredoxin]</text>
            <dbReference type="Rhea" id="RHEA:48944"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:90794"/>
            <dbReference type="ChEBI" id="CHEBI:90795"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="1.3.7.15"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="5">Porphyrin-containing compound metabolism; bacteriochlorophyll biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Chlorophyllide reductase is composed of three subunits; BchX, BchY and BchZ. Forms a heterodimer of one BchY and one BchZ subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the ChlB/BchB/BchZ family.</text>
    </comment>
    <dbReference type="EC" id="1.3.7.15" evidence="8"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09460.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900822.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2066"/>
    <dbReference type="EnsemblBacteria" id="SHH09460">
        <property type="protein sequence ID" value="SHH09460"/>
        <property type="gene ID" value="SAMN05444003_2066"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00669"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016730">
        <property type="term" value="F:oxidoreductase activity, acting on iron-sulfur proteins as donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030494">
        <property type="term" value="P:bacteriochlorophyll biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015979">
        <property type="term" value="P:photosynthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010244">
        <property type="entry name" value="BchZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013580">
        <property type="entry name" value="LI-POR_suB-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000510">
        <property type="entry name" value="Nase/OxRdtase_comp1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016209">
        <property type="entry name" value="Protochlorophyllide_Rdtase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00148">
        <property type="entry name" value="Oxidored_nitro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08369">
        <property type="entry name" value="PCP_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000163">
        <property type="entry name" value="PCP_ChlB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02014">
        <property type="entry name" value="BchZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13" id="KW-0077">Bacteriochlorophyll biosynthesis</keyword>
    <keyword evidence="12" id="KW-0149">Chlorophyll biosynthesis</keyword>
    <keyword evidence="11" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-0602">Photosynthesis</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Oxidored_nitro" evidence="15">
        <location>
            <begin position="12"/>
            <end position="397"/>
        </location>
    </feature>
    <feature type="domain" description="PCP_red" evidence="16">
        <location>
            <begin position="427"/>
            <end position="476"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000410"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00000965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001586"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00003934"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00004800"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00008935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00011283"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00012326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00019776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00032447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF00148"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF08369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="SHH09460.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="486" mass="53302" checksum="47F1B6C08942C4D6" modified="2017-03-15" version="1">MLITDHDRAGGYWGAVYAFCAVKGLQVVVDGPVGCENLPVTSVLHYTDGLPPHELPIVVTGLSETEMGEGTEDAMKRAWDTLDPALPAVVVTGSIAEMIGGGVTPQGTNIQRFLPRTIDEDQWECADRAMTWIFTEFGMTKGRMPPEKKREEGAKPRVNILGPMYGTFNMPSDLAEIRRLVEGIGAEVNMVMPLGAHLAEMRNLVNADVNICMYREFGRGLAEVLGKPYLQAPMGLNSTTKFLRKLGDLLGIDPEPFIEQEKHSTIKPVWDLWRSVTQDFFATAEFAVVANETYTRGLRNYLENDLGFPCALAVARCRGKKTNNDEVRELIHQKRPLVVFGSINEKMYLAEMSGGHGPSPSFIPASFPGAAIRRATGTPFMGYAGATYVLQEVCNGLFDSLFHILPLASDMDATDATLTPLRRDFPWDEDAQAKLDEIVASHPILTRISAAKKLRDAAERAALDAGNDRVVLETVETLESVSGGQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q746</accession>
    <name>A0A1M5Q746_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">1-deoxy-D-xylulose-5-phosphate synthase</fullName>
            <ecNumber evidence="10">2.2.1.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">1-deoxyxylulose-5-phosphate synthase</fullName>
            <shortName evidence="10">DXP synthase</shortName>
            <shortName evidence="10">DXPS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">dxs</name>
        <name evidence="12" type="ORF">SAMN05444003_2088</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>D-glyceraldehyde 3-phosphate + H(+) + pyruvate = 1-deoxy-D-xylulose 5-phosphate + CO2</text>
            <dbReference type="Rhea" id="RHEA:12605"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57792"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="EC" id="2.2.1.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="10">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </cofactor>
        <text evidence="10">Binds 1 thiamine pyrophosphate per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 10">Metabolic intermediate biosynthesis; 1-deoxy-D-xylulose 5-phosphate biosynthesis; 1-deoxy-D-xylulose 5-phosphate from D-glyceraldehyde 3-phosphate and pyruvate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3 10">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 10">Belongs to the transketolase family. DXPS subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.2.1.7" evidence="10"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900843.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2088"/>
    <dbReference type="EnsemblBacteria" id="SHH09895">
        <property type="protein sequence ID" value="SHH09895"/>
        <property type="gene ID" value="SAMN05444003_2088"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00064">
        <property type="reaction ID" value="UER00091"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008661">
        <property type="term" value="F:1-deoxy-D-xylulose-5-phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052865">
        <property type="term" value="P:1-deoxy-D-xylulose 5-phosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016114">
        <property type="term" value="P:terpenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009228">
        <property type="term" value="P:thiamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02007">
        <property type="entry name" value="TPP_DXS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00315">
        <property type="entry name" value="DXP_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005477">
        <property type="entry name" value="Dxylulose-5-P_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009014">
        <property type="entry name" value="Transketo_C/PFOR_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005475">
        <property type="entry name" value="Transketolase-like_Pyr-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033248">
        <property type="entry name" value="Transketolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005474">
        <property type="entry name" value="Transketolase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43322">
        <property type="entry name" value="PTHR43322"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13292">
        <property type="entry name" value="DXP_synthase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02779">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02780">
        <property type="entry name" value="Transketolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00861">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52922">
        <property type="entry name" value="SSF52922"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00204">
        <property type="entry name" value="dxs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00801">
        <property type="entry name" value="TRANSKETOLASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 10" id="KW-0414">Isoprene biosynthesis</keyword>
    <keyword evidence="6 10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 10" id="KW-0784">Thiamine biosynthesis</keyword>
    <keyword evidence="8 10" id="KW-0786">Thiamine pyrophosphate</keyword>
    <keyword evidence="4 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TRANSKETOLASE_1" evidence="11">
        <location>
            <begin position="34"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="region of interest" description="Thiamine pyrophosphate binding" evidence="10">
        <location>
            <begin position="119"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="region of interest" description="Thiamine pyrophosphate binding" evidence="10">
        <location>
            <begin position="151"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="78"/>
        </location>
        <ligand>
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="150"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="179"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="288"/>
        </location>
        <ligand>
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="370"/>
        </location>
        <ligand>
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS00801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHH09895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="636" mass="67375" checksum="495C02C4CBB13DD3" modified="2017-03-15" version="1">MDRPITPLLDTIAAPSDLKVLSVAQLSQLADEVRAETISAVSVTGGHLGAGLGVVEMTVALHAVFDTPKDKIIWDVSHQCYPHKILTGRRDRIRTLRQKDGLSGFTKRSESEYDPFGAAHSSTSISAALGFSVARDLGGEGGDAIAVIGDGALSAGMAYEAMNNAGHLKKRLIVILNDNEMSIAPPVGAMSSYLSQLYAGEPFQELKAAAKGAVSLLPEPFREGAKRAKDMVKHMTVGGTLFEQLGFSYLGPIDGHDMDQLLAVLRTVKQRATGPILIHAITKKGKGYAPAEAARDRGHGVGKFDVVTGEQKKAPSNAPSYTSVFADTLVKMAAEDSKICAVTAAMPDGTGLNKFMERYASRCFDVGIAEQHAVTFAAALAAGGMKPFCALYSTFLQRGYDQVVHDVAIQRLPVRFAIDRAGLVGADGSTHAGAFDVCFMTNLPGMVMMAAADEAELVRMVATAAAYEDGPSAFRFPRGEGVGEDIPEDAEPLEIGRGRMIREGSGVAILSFGTRLQEVEAACESLAAKGVTPTVADARFAKPLDRDLILRLAADHEALITVEEGAVGGFGSHVAQLLSDEGVFDHGLKFRSMVLPDTFIDQASPRDMYAVAGLNAEDIEAKVLEVLGVDVLGKRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q817</accession>
    <name>A0A1M5Q817_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2101</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH10142.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2101"/>
    <dbReference type="EnsemblBacteria" id="SHH10142">
        <property type="protein sequence ID" value="SHH10142"/>
        <property type="gene ID" value="SAMN05444003_2101"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH10142.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="264" mass="29119" checksum="BD297F225C429AE3" modified="2017-03-15" version="1">MMHRAYTERTQAVHTHRTHTATIGAGMLTLLVAIGLTATPAFSQTAETFSLPAGCEAWVTVQAKDCTVEHNFTCEGDPVGLKQRVTLDEEGMTYLGATDDESQWIRSFHPRSGHTEQLEDNPRDRASLTELIETGIDTYDFRTLSPELGATRFVGQDSLTGRVVTIDGVTLEETQFNITAYAEDGTELWSAEGNEYISRDWRMFQAGPGTVTTPRETYEEDDSPVEYIFPGEPGFLSVNPKHGCGLTLSSSPVTALKEYLNVDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q8K7</accession>
    <name>A0A1M5Q8K7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">NADH dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2104</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH10196.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900856.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2104"/>
    <dbReference type="EnsemblBacteria" id="SHH10196">
        <property type="protein sequence ID" value="SHH10196"/>
        <property type="gene ID" value="SAMN05444003_2104"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016040">
        <property type="entry name" value="NAD(P)-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13460">
        <property type="entry name" value="NAD_binding_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="242"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="domain" description="NAD(P)-bd_dom" evidence="2">
        <location>
            <begin position="9"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH10196.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="327" mass="35346" checksum="21219555149AC768" modified="2017-03-15" version="1">MSQMVTIFGGSGFVGRYIARRMAQEGWRVRVAVRNPNEAMYVRPYGSVGQVEPVFCNIRDDASVAAVTAGADAVVNCVGVLDEVGKNTFEAVQAEAPGRIARLAAEHGVSRMVHISSIGASGNSASEYSRTKAAGEAAVLEHMPDAMILRPSIIFGPEDDFFNRFASMSRLGPVLPVVGADTLFQPVFVDDVAAAAEKGVLGAADGGVYELGGPDKESFRELMQRMLDVVRRRRLILNMPNWIARIMAFTFSVAHVLTLGIIPKAITADQIKNLAVDNVVADDAKGLDDLCIRPTAMAAILPDYLWRFRPSGQYDAIKESAKNLRES</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QK72</accession>
    <name>A0A1M5QK72_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2170</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14487.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900989.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH14487">
        <property type="protein sequence ID" value="SHH14487"/>
        <property type="gene ID" value="SAMN05444003_2170"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH14487.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="61" mass="6404" checksum="22D5379E61A631AE" modified="2017-03-15" version="1">MELVKQPLWQRALLGVLALILLVFTVPAYIDTANNPGLANLNGEVASLGSVAGAFLARQLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QKK1</accession>
    <name>A0A1M5QKK1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2162</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14319.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900977.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2162"/>
    <dbReference type="EnsemblBacteria" id="SHH14319">
        <property type="protein sequence ID" value="SHH14319"/>
        <property type="gene ID" value="SAMN05444003_2162"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008690">
        <property type="term" value="F:3-deoxy-manno-octulosonate cytidylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009103">
        <property type="term" value="P:lipopolysaccharide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02517">
        <property type="entry name" value="CMP-KDO-Synthetase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003329">
        <property type="entry name" value="Cytidylyl_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004528">
        <property type="entry name" value="KdsB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02348">
        <property type="entry name" value="CTP_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0448">Lipopolysaccharide biosynthesis</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022985"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH14319.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="266" mass="29386" checksum="F5A57DE93D83E92D" modified="2017-03-15" version="1">MSVIIVIPARYASSRFPGKPLATLVGATGESLSLIERSWRAAMAVNGADRVVVATDDDRIRDAAQAFGAEVVMTSSECKNGTERCAEVLERIGENYEIVVNLQGDAPLTPSWFIEDLVKGLRDDQSFDVATPVLCADGATLAGLKEDRRNGRVGGTTAVFAHDMKALYFSKEVIPFVEEEFDADQPTPVFHHVGVYAYRPEALREYLTHPIGIYEKLEGLEQLRFLEAGHNVLCVEVEAKGRQFWEVNNPEDVPKIEKMLQEMGIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QN20</accession>
    <name>A0A1M5QN20_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">dITP/XTP pyrophosphatase</fullName>
            <ecNumber evidence="7">3.6.1.66</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Non-canonical purine NTP pyrophosphatase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Non-standard purine NTP pyrophosphatase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Nucleoside-triphosphate diphosphatase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Nucleoside-triphosphate pyrophosphatase</fullName>
            <shortName evidence="7">NTPase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_2218</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>H2O + ITP = diphosphate + H(+) + IMP</text>
            <dbReference type="Rhea" id="RHEA:29399"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <dbReference type="ChEBI" id="CHEBI:61402"/>
            <dbReference type="EC" id="3.6.1.66"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>H2O + XTP = diphosphate + H(+) + XMP</text>
            <dbReference type="Rhea" id="RHEA:28610"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57464"/>
            <dbReference type="ChEBI" id="CHEBI:61314"/>
            <dbReference type="EC" id="3.6.1.66"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>dITP + H2O = dIMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:28342"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61194"/>
            <dbReference type="ChEBI" id="CHEBI:61382"/>
            <dbReference type="EC" id="3.6.1.66"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="7">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 8">Belongs to the HAM1 NTPase family.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.66" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15485.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901071.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2218"/>
    <dbReference type="EnsemblBacteria" id="SHH15485">
        <property type="protein sequence ID" value="SHH15485"/>
        <property type="gene ID" value="SAMN05444003_2218"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035870">
        <property type="term" value="F:dITP diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036220">
        <property type="term" value="F:ITP diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017111">
        <property type="term" value="F:nucleoside-triphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036222">
        <property type="term" value="F:XTP diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009117">
        <property type="term" value="P:nucleotide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009146">
        <property type="term" value="P:purine nucleoside triphosphate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00515">
        <property type="entry name" value="HAM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01405">
        <property type="entry name" value="Non_canon_purine_NTPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020922">
        <property type="entry name" value="dITP/XTP_pyrophosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002637">
        <property type="entry name" value="Ham1p-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029001">
        <property type="entry name" value="ITPase-like_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11067">
        <property type="entry name" value="PTHR11067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01725">
        <property type="entry name" value="Ham1p_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52972">
        <property type="entry name" value="SSF52972"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00042">
        <property type="entry name" value="TIGR00042"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 7" id="KW-0546">Nucleotide metabolism</keyword>
    <keyword evidence="3 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="13"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="160"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="188"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="7">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="45"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="74"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="75"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="183"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH15485.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="202" mass="22420" checksum="DAE274831FD97577" modified="2017-03-15" version="1">MRRFEGTELVVATHNIGKLEEIAALLEPYQIKVTSNRDHTLPEPEETETTFAGNARIKAHAAAKATGLPALADDSGIEVDGLDGAPGVYTADWAEGPEGRDFSKAMTRTWKELEERDAPFPRTARFCSTLVLAWPDGHDEVFPGKIEGEVVWPMRGDQGHGYDPIFRPNGYDITFGEMDRWEKNKISHRADAFSKLIAGCFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QN62</accession>
    <name>A0A1M5QN62_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2210</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901058.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2210"/>
    <dbReference type="EnsemblBacteria" id="SHH15321">
        <property type="protein sequence ID" value="SHH15321"/>
        <property type="gene ID" value="SAMN05444003_2210"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH15321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="231" mass="26075" checksum="3E578FDB5D12C252" modified="2017-03-15" version="1">MRIAMWSGPRNLSTAMMYSFANREDFAAWDEPFYAPYLKATGLDHPLAQEIIASHESDPISVANACLGSIPDEKPHFYMKHMPHHMIDGFPLDWASECVNIHLIRHPARVIASYGRKREQATLSDIGFQQQFDVYEKVGGLIVDSADIRADPRSKLEQICAEIGLEFDPAMLSWEAGPRRFDGVWAKHWYDAVHKSTGFAGAEGPLPDCEDQVELLEQALPIYEKLAKMKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QNA0</accession>
    <name>A0A1M5QNA0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 11">tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10 11">Glucose-inhibited division protein A</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">mnmG</name>
        <name evidence="11" type="synonym">gidA</name>
        <name evidence="14" type="ORF">SAMN05444003_2223</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 11">NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 11">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="9 11">Homodimer. Heterotetramer of two MnmE and two MnmG subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 11">Belongs to the MnmG family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15584.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901480.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2223"/>
    <dbReference type="EnsemblBacteria" id="SHH15584">
        <property type="protein sequence ID" value="SHH15584"/>
        <property type="gene ID" value="SAMN05444003_2223"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002098">
        <property type="term" value="P:tRNA wobble uridine modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.570">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00129">
        <property type="entry name" value="MnmG_GidA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004416">
        <property type="entry name" value="MnmG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002218">
        <property type="entry name" value="MnmG-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020595">
        <property type="entry name" value="MnmG-rel_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026904">
        <property type="entry name" value="MnmG_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044920">
        <property type="entry name" value="MnmG_C_subdom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040131">
        <property type="entry name" value="MnmG_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11806">
        <property type="entry name" value="PTHR11806"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11806:SF0">
        <property type="entry name" value="PTHR11806:SF0"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01134">
        <property type="entry name" value="GIDA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13932">
        <property type="entry name" value="GIDA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00136">
        <property type="entry name" value="gidA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01280">
        <property type="entry name" value="GIDA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 11" id="KW-0274">FAD</keyword>
    <keyword evidence="5 11" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="8 11" id="KW-0520">NAD</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 11" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="GIDA" evidence="12">
        <location>
            <begin position="5"/>
            <end position="393"/>
        </location>
    </feature>
    <feature type="domain" description="GIDA_C" evidence="13">
        <location>
            <begin position="398"/>
            <end position="607"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="10"/>
            <end position="15"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="122"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="177"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="269"/>
            <end position="283"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="366"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007653"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00020461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00025948"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00031800"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00129"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF01134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF13932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="SHH15584.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="620" mass="67158" checksum="1C2F041DAC5ADC41" modified="2017-03-15" version="1">MKHFDVVVIGGGHAGCEAAFAADRAGAKTALVTLRREDLGVMSCNPAIGGLGKGHLVREIDALDGVMGRGADAAGIQFRLLNRKKGPAVQGPRAQIDRALYRAFMQNEAQSNSTVEIIEDEVVDLVLNGQAIAGVDLASGQRIETNAVVLTTGTFLRGVIHIGDEQRPGGRMGDRPSTKLAERLDSFELPLGRLKTGTPPRLDGNTIDWDVLEMQDGDDEPSMFSSLSNGPAVRQVACGIAHTNEKTHDIIRENLERSAMYGGHIEGVGPRYCPSIEDKVVRFADKTSHQVFLEPEGLNDSTVYPNGISTSLPSPIQKDYVKSIKGLENATILQPGYAIEYDYVDPRSLNETLECKSVDGFFLGGQINGTTGYEEAAAQGLVAGVNAARQALGLPVATFSRTNSYIGVMIDDLITRGVAEPYRMFTSRAEFRLSLRSDNADQRLTEIGREIGLVGDVRWAAYSEFKEKLDRSRSDLEAISLSARDLQAAGAKINPDSPSRSGYNALSLADFGPSELFSLVPEADEMDKKVLKQLKCDALYANYIERQKKDIEAMQRDEGAKIPENLDIEGLGGLSYELRRKVLLAKPSSIAQAKKIDGMTPAALMVLQAAIRDPSKRFAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QUV5</accession>
    <name>A0A1M5QUV5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 6">Thiazole synthase</fullName>
            <ecNumber evidence="4 6">2.8.1.10</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">thiG</name>
        <name evidence="8" type="ORF">SAMN05444003_2337</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 6">Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>1-deoxy-D-xylulose 5-phosphate + 2-iminoacetate + [sulfur-carrier protein ThiS]-C-terminal Gly-NH-CH2-C(O)SH = 2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate + [sulfur-carrier protein ThiS]-C-terminal Gly-Gly + 2 H(+) + 2 H2O</text>
            <dbReference type="Rhea" id="RHEA:26297"/>
            <dbReference type="Rhea" id="RHEA-COMP:12908"/>
            <dbReference type="Rhea" id="RHEA-COMP:12909"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57792"/>
            <dbReference type="ChEBI" id="CHEBI:62899"/>
            <dbReference type="ChEBI" id="CHEBI:77846"/>
            <dbReference type="ChEBI" id="CHEBI:90619"/>
            <dbReference type="ChEBI" id="CHEBI:90778"/>
            <dbReference type="EC" id="2.8.1.10"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 6">Cofactor biosynthesis; thiamine diphosphate biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homotetramer. Forms heterodimers with either ThiH or ThiS.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the ThiG family.</text>
    </comment>
    <dbReference type="EC" id="2.8.1.10" evidence="4 6"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17934.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901259.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2337"/>
    <dbReference type="EnsemblBacteria" id="SHH17934">
        <property type="protein sequence ID" value="SHH17934"/>
        <property type="gene ID" value="SAMN05444003_2337"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00060"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990107">
        <property type="term" value="F:thiazole synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009229">
        <property type="term" value="P:thiamine diphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd04728">
        <property type="entry name" value="ThiG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00443">
        <property type="entry name" value="ThiG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033983">
        <property type="entry name" value="Thiazole_synthase_ThiG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008867">
        <property type="entry name" value="ThiG"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34266">
        <property type="entry name" value="PTHR34266"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05690">
        <property type="entry name" value="ThiG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0704">Schiff base</keyword>
    <keyword evidence="5 6" id="KW-0784">Thiamine biosynthesis</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="ThiG" evidence="7">
        <location>
            <begin position="5"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="region of interest" description="DXP binding" evidence="6">
        <location>
            <begin position="184"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="region of interest" description="DXP binding" evidence="6">
        <location>
            <begin position="206"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with DXP" evidence="6">
        <location>
            <position position="96"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="157"/>
        </location>
        <ligand>
            <name>1-deoxy-D-xylulose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57792"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002834"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004948"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00443"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF05690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH17934.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="257" mass="27117" checksum="5E5C8E71DECAE636" modified="2017-03-15" version="1">MRDFYGVTLANGFMLGTAQYPSPAILADAFKRSGASVATVSLRRESGQDRAGQDFWALIKDLGVHILPNTAGCHTVKEAVTTAHMAREVFGTKWIKLEVIGEEDTLQPDVFGLTEAARILSEDGFEVFPYCTEDLVVAGKLVDAGCEVLMPWGAPIGSGQGLNNVFGLRAMRAHFPDIPLVVDAGLGLPSHAAQAMELGYDAVLLNTAVAKAGDPALMAEAFASAIKAGVQAQISDPMEPRDMAAPSTPVIGKAFLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QV93</accession>
    <name>A0A1M5QV93_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Glycosyl transferase family 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2324</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17660.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2324"/>
    <dbReference type="EnsemblBacteria" id="SHH17660">
        <property type="protein sequence ID" value="SHH17660"/>
        <property type="gene ID" value="SAMN05444003_2324"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH17660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="342" mass="38290" checksum="D431BCC38543D390" modified="2017-03-15" version="1">MAGDPILIYTTMKNEGPYMLEWVAYHKSLGVDQFLIFTNDCTDGTDAIAERLTELGVAIHVDNAVAPGGSPQNQMLRRVRRHKAFKRAGWTFCLDVDEFLNIRILGAGVPELIAKLEEVSGGPIDVASFAWKLFGCGGIETFEDRPVTQQFFMCDDEVTPYSGVAQGFKSITRNNGTFPRYGPHRPKGASDDIAPRLRWSDGSGQLMPYETVSWRARPGFGHEFARLHHYVVRSVDGFLVKRDRGKTNHVNHDQAETYWNNMNANLCEDRTILPAVERAEIVRLELMADPALSELHEAAVAWHKAKISELRARDDWQEFRDFLKANLTHRAASTKAGGGVSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QW01</accession>
    <name>A0A1M5QW01_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycosyltransferase involved in cell wall bisynthesis</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2357</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18357.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901294.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2357"/>
    <dbReference type="EnsemblBacteria" id="SHH18357">
        <property type="protein sequence ID" value="SHH18357"/>
        <property type="gene ID" value="SAMN05444003_2357"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028098">
        <property type="entry name" value="Glyco_trans_4-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13439">
        <property type="entry name" value="Glyco_transf_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_4-like_N" evidence="2">
        <location>
            <begin position="26"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="domain" description="Glycos_transf_1" evidence="1">
        <location>
            <begin position="226"/>
            <end position="384"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH18357.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="414" mass="45777" checksum="BAC45463E2E08131" modified="2017-03-15" version="1">MADTKEPHHIAYLTGEYPAVSHTFILREVEALKRLGSRVSTCSIRQTGPEHHRGPSEKAALESTFYVLKTARRPVKLFAALLAAVLSPGRLFRAIALAWRTRPPGFKAGLYQVFYLIEAMILSKHLKEKAVDHLHNHFGNSSCSVAMLTSELSGIPFSYTMHGPAIFFEPRYWRIDEKIARAKFVACISHFCRSQGMIFADPQYWPKMHIVHCGVQPENYTPNPAGKSGRQFIFVGRLAAVKGILVLIDAFAKTRAQHPDARLTIVGDGVERAKIEDFIAQKGVSDAVHLTGYLSQDEVAEHLSNSDVFVLPSFAEGVPVVLMEAMASRLPVIATRIAGIQELVADGQTGTTIPPADVDALATAMSAMFDDPDQWSKMGDEGRKKIETDFNQDKEAAWLRTLIEAETTPPTLRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QYI3</accession>
    <name>A0A1M5QYI3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Exopolysaccharide biosynthesis protein YbjH</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2383</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18830.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH18830">
        <property type="protein sequence ID" value="SHH18830"/>
        <property type="gene ID" value="SAMN05444003_2383"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010344">
        <property type="entry name" value="YbjH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06082">
        <property type="entry name" value="YjbH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012793503" evidence="1">
        <location>
            <begin position="23"/>
            <end position="700"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH18830.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="700" mass="76987" checksum="818D8D8AEB68B359" modified="2017-03-15" version="1">MKFSKTLGYSVLFAALANSTHAQETTYTLYGTPGLVEMPTARSAPDGEIIASYSHWNLQQKTSFTFQLTPRLSGTFRYSGIDERSGPDTDGTFDRSFDFKYRIVDETDWRPAIAIGIQDFAGTGILSAEYVVATKAVTDSIDVTAGLGWGRFASRGGFSNPLGFIFPEFEERPQRDNGEGGTPSTDQFFRGDAALFGGIDYRVSEKLSFQIEYSSDAYEREANLDTIDIRSPINVGMIYRPFPNLAFNLAYLQGSEIAGAVTVSVNPRKRIAPVVPLEAPVPLAGRNGDPSVAASWEGAITSQSPVARELSSQGIRLIGYDVSGSTARIRFVNTRYRSEAQATGRAVRVLSGYLPDTVETIIAEPSQNGIPLSSATFDRRTLMENEVRADGANAVLAASTIEDANLSYNLNNVADTSSRFSWGLLPYVQLFVFNANDPVQIDAGLELTTMYRIQPNLVIDGSFRQTLVGARDLPPTREDSSEDVPNVRSDGRYYGIDGQPVISSLTLTHYGRPGENLYSRASVGYLERMFGGVSGEVLWKPVDSRLALGAELNYAVQREEDMLFGFQDYDVVTGHLSAYYDFENGFLGQVDVGRYLAGDWGATFSLDREFENGWKVGAYFTLTDMPFEEFGEGSFDKGIRVTVPVDFFLGNPTRREINSNLNSLARDGGARLNVDGRLYEIVRDGHTAGPLGDTWGRFWQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RCJ8</accession>
    <name>A0A1M5RCJ8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2505</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23908.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901593.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2505"/>
    <dbReference type="EnsemblBacteria" id="SHH23908">
        <property type="protein sequence ID" value="SHH23908"/>
        <property type="gene ID" value="SAMN05444003_2505"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH23908.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="297" mass="33553" checksum="C1DFB7DAD191560B" modified="2017-03-15" version="1">MDWTSLPYFLAAVRTGTLRGAAEATGSTHATVNRHIEVLENSYGVRLFRRTRRGLELTSAGRDILPVVEEAERKVNEAKRRVQGLDKEETGTVRFSTTGTLVYEIVSPILGRFTKAYPDIDLDIRVSDRFEDINRLQTDVSLRFAHDVQDDVIARKLYPLALVPMASRSYLEKHLPLAGPNGEGLSWLGWDAIDRRPDWLADTPFPGAEVRHATTDPILQLSLARQGVGIVNSSVYFTTIYPELVPVPGVEPVLDRNLWLLFHNELRRTIRVRRFIDFLSKELIDLKPLLQAGVRTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RFT3</accession>
    <name>A0A1M5RFT3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2561</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25058.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901897.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2561"/>
    <dbReference type="EnsemblBacteria" id="SHH25058">
        <property type="protein sequence ID" value="SHH25058"/>
        <property type="gene ID" value="SAMN05444003_2561"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013291079" evidence="1">
        <location>
            <begin position="19"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH25058.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="158" mass="17050" checksum="F32F76252ECB07C9" modified="2017-03-15" version="1">MKFSSAAALCFIASQATALSCMPPDVATAFNRMNEVPEDVYVLRGKLDFDESLLPQGVVNKERHPAPISGTFTGEALTRDGFTSRFDSPAIVQSVCYGPWCGGVGSSEDLITFAKIIDGAVVVEVDPCDSTVFYNPTPKMESDLISCIRGETCEPKER</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RKN9</accession>
    <name>A0A1M5RKN9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Predicted N-formylglutamate amidohydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2624</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26403.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901775.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2624"/>
    <dbReference type="EnsemblBacteria" id="SHH26403">
        <property type="protein sequence ID" value="SHH26403"/>
        <property type="gene ID" value="SAMN05444003_2624"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007709">
        <property type="entry name" value="N-FG_amidohydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011227">
        <property type="entry name" value="UCP029730"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05013">
        <property type="entry name" value="FGase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF029730">
        <property type="entry name" value="UCP029730"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH26403.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="245" mass="27229" checksum="DECAA3AD50926701" modified="2017-03-15" version="1">MTETVYHIFNQAKTGRWVLTCDHASNRVPNWVNGGDLGLPAEDMQRHIAFDIGAAGVTRHLSELLNSPAILSDFSRIVIDPNRGHDDPTLMRKIYDGSIIPANRDATVQDLQRRKDELYFPYHAAIAETATKVENPVICAIHSFTPQLQNQPKRPWEIGILYAKDARLATPLMDACRAVGWCVGDNEPYNGDLPGDAIDQHALQHGRPNILIELRNDLIADDAGQRLWAERLAPILTETLAATGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RKR3</accession>
    <name>A0A1M5RKR3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Pyridoxine 5'-phosphate synthase</fullName>
            <shortName evidence="2">PNP synthase</shortName>
            <ecNumber evidence="2">2.6.99.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">pdxJ</name>
        <name evidence="3" type="ORF">SAMN05444003_2636</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>1-deoxy-D-xylulose 5-phosphate + 3-amino-2-oxopropyl phosphate = H(+) + 2 H2O + phosphate + pyridoxine 5'-phosphate</text>
            <dbReference type="Rhea" id="RHEA:15265"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57279"/>
            <dbReference type="ChEBI" id="CHEBI:57792"/>
            <dbReference type="ChEBI" id="CHEBI:58589"/>
            <dbReference type="EC" id="2.6.99.2"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Cofactor biosynthesis; pyridoxine 5'-phosphate biosynthesis; pyridoxine 5'-phosphate from D-erythrose 4-phosphate: step 5/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homooctamer; tetramer of dimers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the PNP synthase family.</text>
    </comment>
    <dbReference type="EC" id="2.6.99.2" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26668.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901794.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2636"/>
    <dbReference type="EnsemblBacteria" id="SHH26668">
        <property type="protein sequence ID" value="SHH26668"/>
        <property type="gene ID" value="SAMN05444003_2636"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00244">
        <property type="reaction ID" value="UER00313"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033856">
        <property type="term" value="F:pyridoxine 5'-phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008615">
        <property type="term" value="P:pyridoxine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00003">
        <property type="entry name" value="PNPsynthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00279">
        <property type="entry name" value="PdxJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004569">
        <property type="entry name" value="PyrdxlP_synth_PdxJ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036130">
        <property type="entry name" value="Pyridoxine-5'_phos_synth"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30456">
        <property type="entry name" value="PTHR30456"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03740">
        <property type="entry name" value="PdxJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63892">
        <property type="entry name" value="SSF63892"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00559">
        <property type="entry name" value="pdxJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 2" id="KW-0664">Pyridoxine biosynthesis</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="1-deoxy-D-xylulose 5-phosphate binding" evidence="2">
        <location>
            <begin position="12"/>
            <end position="13"/>
        </location>
    </feature>
    <feature type="region of interest" description="3-amino-2-oxopropyl phosphate binding" evidence="2">
        <location>
            <begin position="219"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="46"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="2">
        <location>
            <position position="197"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="10"/>
        </location>
        <ligand>
            <name>3-amino-2-oxopropyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57279"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="21"/>
        </location>
        <ligand>
            <name>3-amino-2-oxopropyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57279"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="48"/>
        </location>
        <ligand>
            <name>1-deoxy-D-xylulose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57792"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="53"/>
        </location>
        <ligand>
            <name>1-deoxy-D-xylulose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57792"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="103"/>
        </location>
        <ligand>
            <name>1-deoxy-D-xylulose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57792"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="198"/>
        </location>
        <ligand>
            <name>3-amino-2-oxopropyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57279"/>
        </ligand>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="2">
        <location>
            <position position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023096"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00279"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH26668.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="247" mass="26712" checksum="40DE18507366FFA9" modified="2017-03-15" version="1">MMNELRLGVNIDHVATVRNARGGAVPDPVRAAKMAEEAGADGITAHLREDRRHIADADIEALMDALTVPLNFEMAATAEMQEIALRHKPHAVCIVPEKREERTTEGGLEVAREENSLAHYIAPLRDAGCRVSIFIAADQAQIEAASRIGAEVIELHTGAYCDAHAEGHFDLRDLELAKLTEMAAFANSLGLEVHAGHGLTYGCVSPVAALSQVKELNIGHFLIGESIFRGLPDAIGEMRRIMDEARA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RN09</accession>
    <name>A0A1M5RN09_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">DNA topoisomerase 4 subunit A</fullName>
            <ecNumber evidence="5">5.6.2.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Topoisomerase IV subunit A</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">parC</name>
        <name evidence="9" type="ORF">SAMN05444003_2663</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>ATP-dependent breakage, passage and rejoining of double-stranded DNA.</text>
            <dbReference type="EC" id="5.6.2.2"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="5">Heterotetramer composed of ParC and ParE.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.2" evidence="5"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH27313.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901836.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2663"/>
    <dbReference type="EnsemblBacteria" id="SHH27313">
        <property type="protein sequence ID" value="SHH27313"/>
        <property type="gene ID" value="SAMN05444003_2663"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019897">
        <property type="term" value="C:extrinsic component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003918">
        <property type="term" value="F:DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007059">
        <property type="term" value="P:chromosome segregation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006265">
        <property type="term" value="P:DNA topological change"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00187">
        <property type="entry name" value="TOP4c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.268.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.199.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00936">
        <property type="entry name" value="ParC_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006691">
        <property type="entry name" value="GyrA/parC_rep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035516">
        <property type="entry name" value="Gyrase/topoIV_suA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013760">
        <property type="entry name" value="Topo_IIA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013758">
        <property type="entry name" value="Topo_IIA_A/C_ab"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013757">
        <property type="entry name" value="Topo_IIA_A_a_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002205">
        <property type="entry name" value="Topo_IIA_dom_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005742">
        <property type="entry name" value="TopoIV_A_Gneg"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03989">
        <property type="entry name" value="DNA_gyraseA_C"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00521">
        <property type="entry name" value="DNA_topoisoIV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00434">
        <property type="entry name" value="TOP4c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101904">
        <property type="entry name" value="SSF101904"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56719">
        <property type="entry name" value="SSF56719"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3 5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4 5 9" id="KW-0413">Isomerase</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0799">Topoisomerase</keyword>
    <feature type="domain" description="TOP4c" evidence="8">
        <location>
            <begin position="17"/>
            <end position="495"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="746"/>
            <end position="780"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="467"/>
            <end position="494"/>
        </location>
    </feature>
    <feature type="active site" description="O-(5'-phospho-DNA)-tyrosine intermediate" evidence="5">
        <location>
            <position position="128"/>
        </location>
    </feature>
    <feature type="site" description="Interaction with DNA" evidence="5">
        <location>
            <position position="48"/>
        </location>
    </feature>
    <feature type="site" description="Interaction with DNA" evidence="5">
        <location>
            <position position="84"/>
        </location>
    </feature>
    <feature type="site" description="Interaction with DNA" evidence="5">
        <location>
            <position position="86"/>
        </location>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="5">
        <location>
            <position position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH27313.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="780" mass="87116" checksum="2C26BCC6A33B91E8" modified="2017-03-15" version="1">MSESSDEFQEENTDVTEPLRRAIGERYLTYALSTIMNRALPDARDGLKPVHRRILYAMSRLKLSSTGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAAARYTEARMTSAAEALLVGLSENAVDFRPNYDGRLEEPSVLPATYPNLLANGAAGIAVGMATNIPPHNLHELIDACLHLIKAPNARDETLMEYVPGPDFPTGGVIVESPENILEAYKTGRGAMRLRAKWEIEDLGRGQWQAVVTEIPYQVQKSKLIEKLAEVIQTKKVPLLTDVRDESADDIRIVLEPRAKTVDPEVMMGLLFKHSELETRFSLNMNVLIDGLTPKVCSLKEVLRAFLDHRRDVLIRRSQHRMEKIDIRLEVLEGFIVAFLNLDRVIDIIRYDDDPKKALMIEDWALDHPRATSEKDYVSPITEDADPEVSLTEAQAEAILNMRLRSLRRLEEIELLKERDDLMKERADLEDLLEDEGLQWSKIAEQLRETRKEFGRDSTGGARRTQFAEAEEIADIPMEAMIEREPITVVLSQMGWIRAMTGHIDLARELKFKDGDGPRFIFHAETTDRLLVFASNGRFYTVSGSNLPGGRGMGEPLRLMVDLPNEAEIIDIFAHKSGEKLLVASAEGNGFVVPEDDVVAQTRTGKQVLNVKDTVAKICKRVTGDHVAVVSENAKLLVFPLEDLPEMGRGKGVRIQKYKKATGRQGTLELDGGLSDVTTFNWADGLSWEMGGGKTRTEPDMTDWKGARAGVGKRPPYGFPKNNRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RN17</accession>
    <name>A0A1M5RN17_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">DNA-directed RNA polymerase subunit beta'</fullName>
            <shortName evidence="8">RNAP subunit beta'</shortName>
            <ecNumber evidence="8">2.7.7.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">RNA polymerase subunit beta'</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Transcriptase subunit beta'</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">rpoC</name>
        <name evidence="11" type="ORF">SAMN05444003_2678</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8 9">DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7 8 9">
            <text>a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate + RNA(n+1)</text>
            <dbReference type="Rhea" id="RHEA:21248"/>
            <dbReference type="Rhea" id="RHEA-COMP:14527"/>
            <dbReference type="Rhea" id="RHEA-COMP:17342"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61557"/>
            <dbReference type="ChEBI" id="CHEBI:140395"/>
            <dbReference type="EC" id="2.7.7.6"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="8">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="8">Binds 2 Zn(2+) ions per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8 9">Belongs to the RNA polymerase beta' chain family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.6" evidence="8"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH27645.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901862.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2678"/>
    <dbReference type="EnsemblBacteria" id="SHH27645">
        <property type="protein sequence ID" value="SHH27645"/>
        <property type="gene ID" value="SAMN05444003_2678"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003899">
        <property type="term" value="F:DNA-directed 5'-3' RNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006351">
        <property type="term" value="P:transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.132.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.274.100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.860.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01322">
        <property type="entry name" value="RNApol_bact_RpoC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045867">
        <property type="entry name" value="DNA-dir_RpoC_beta_prime"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012754">
        <property type="entry name" value="DNA-dir_RpoC_beta_prime_bact"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000722">
        <property type="entry name" value="RNA_pol_asu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006592">
        <property type="entry name" value="RNA_pol_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007080">
        <property type="entry name" value="RNA_pol_Rpb1_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007066">
        <property type="entry name" value="RNA_pol_Rpb1_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042102">
        <property type="entry name" value="RNA_pol_Rpb1_3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007083">
        <property type="entry name" value="RNA_pol_Rpb1_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007081">
        <property type="entry name" value="RNA_pol_Rpb1_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044893">
        <property type="entry name" value="RNA_pol_Rpb1_clamp_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038120">
        <property type="entry name" value="Rpb1_funnel_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19376">
        <property type="entry name" value="PTHR19376"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04997">
        <property type="entry name" value="RNA_pol_Rpb1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00623">
        <property type="entry name" value="RNA_pol_Rpb1_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04983">
        <property type="entry name" value="RNA_pol_Rpb1_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05000">
        <property type="entry name" value="RNA_pol_Rpb1_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04998">
        <property type="entry name" value="RNA_pol_Rpb1_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00663">
        <property type="entry name" value="RPOLA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02386">
        <property type="entry name" value="rpoC_TIGR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 8 9" id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 8 9" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8 9" id="KW-0804">Transcription</keyword>
    <keyword evidence="2 8 9" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 8" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="RPOLA_N" evidence="10">
        <location>
            <begin position="238"/>
            <end position="517"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="72"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="74"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="87"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="90"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="463"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="465"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="467"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="811"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="885"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="892"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="895"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00024550"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01322"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU004279"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM00663"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH27645.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="1417" mass="156918" checksum="B62BC05E0B414E41" modified="2017-03-15" version="1">MNQELTNNPFNPLTPAKTFDEIKVSLASPERILSWSFGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLKSLPSRIGLMLDMTLRDLERILYFENYVVIEPGLTDLTYGQLMSEEEFYDAQDTYGMDAFQANIGAEAIREMLSMIDLESEAEQLRADLKEATGELKPKKIIKRLKIVESFIESGNRPEWMILTVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRMLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVTGPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIREHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNNVLSPSNGAPIIVPSQDMILGLYYTTIEREGMKGEGMTFSNIEEVEHALGAGEVHLHAKITARIPQINEEGLEELVRVETTPGRLRLGALLPLNAKAPFSLVNRLLRKKEVQQVIDTVYRYCGQKESVIFCDQIMSMGFREAFRAGISFGKDDMVIPDTKWDLVNETREQVKDFEQQYMDGLITQGEKYNKVVDAWSKSNDKVTDAMMATIGETPTLEDGSQGEPNSVYMMAHSGARGSVTQMKQLGGMRGLMAKPNGEIIETPIISNFKEGLTVLEYFNSTHGARKGLSDTALKTANSGYLTRRLVDVAQDCIVREPDCGTENAITAEAAVNDGEVVATLAERVLGRVSADEVLKPGTDEVLAEKGELIDERKADMIDAAGIAKMRIRSPLTCESEDGVCATCYGRDLARGTRVNIGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFLEASQTGKVEFRNANLLENKAGEQVVMGRNMVLAIMGPDGEERANHKVGYGSKVFVKEGADVHRGDKLFEWDPFTLPIIAEKAGKVKYVDLVNGIAVREETDDATGMTQKIVADWRAAPKGNELAPKIIVAGTDGEPVLKDDGNPVSYAMSVDAVLSVEDGEDIQAGDVVARIPREGAKTKDITGGLPRVAELFEARRPKDHAIIAEIDGYVRFGKDYKNKRRIAIESSDDPDTKVEYMVPKGKHIPVAEGDFVQKGDFIMDGNPAPHDILAVLGVEALADYMINEVQDVYRLQGVKINDKHIEVIVRQMLQKWEIQDSGDTVLLKGENVDKAEFDEANAKAIARGDRPATGEPILLGITKASLQTRSFISAASFQETTRVLTEASVQGKKDKLIGLKENVIVGRLIPAGTGGATQRVTRIASERDNVVIEARREEAEQATLLAAPTEMADDIVGGDEFDQIIVDTPESRDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RW00</accession>
    <name>A0A1M5RW00_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Myo-inositol 2-dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2722</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30359.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901977.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2722"/>
    <dbReference type="EnsemblBacteria" id="SHH30359">
        <property type="protein sequence ID" value="SHH30359"/>
        <property type="gene ID" value="SAMN05444003_2722"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004104">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000683">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030827">
        <property type="entry name" value="Myo_inos_IolG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01408">
        <property type="entry name" value="GFO_IDH_MocA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02894">
        <property type="entry name" value="GFO_IDH_MocA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04380">
        <property type="entry name" value="myo_inos_iolG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GFO_IDH_MocA" evidence="1">
        <location>
            <begin position="2"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="domain" description="GFO_IDH_MocA_C" evidence="2">
        <location>
            <begin position="133"/>
            <end position="328"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH30359.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="328" mass="35001" checksum="D5AE17E3C9756E1E" modified="2017-03-15" version="1">MIKIGLLGAGRIGQVHARSLVTMPNAKVATVSDFVPEAAEALAAKSGGIAMTTEQVIADPSIDAVVIGTPTTTHFDLIHQAADAGKAIFCEKPIDLSVERIHACISAVSSAGVPFMTAFNRRFDPNFQKVQRQVQDGVIGAVEMVTIQSRDPSPPPIGYIETSGGLFRDMMIHDLDMARFLLGEDPVEVFAQASCLVDPAIGAAGDIDTAMVSLKTASGKLCQISNSRRATYGYDQRVEVHGSRGMLRADNVLTDTVEVATADGYRKSVTEPFFLERYAAAYTNEMAHFVECLTDSKPMAPSIEDGLKAQVLADAADESHRSGKPVSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RZ23</accession>
    <name>A0A1M5RZ23_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC-2 type transport system ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2776</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31592.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902062.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2776"/>
    <dbReference type="EnsemblBacteria" id="SHH31592">
        <property type="protein sequence ID" value="SHH31592"/>
        <property type="gene ID" value="SAMN05444003_2776"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="6"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="44"/>
            <end position="51"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH31592.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="307" mass="33447" checksum="69C3AD90CE7F534F" modified="2017-03-15" version="1">MTANAIEISGLRKTYAASKTQEAKVALKGIDLNIPQGSIFGLLGPNGAGKSTLINILAGLVTKSEGSVKIWGFDQDENPRQSRASIGIMPQEPNLDPYFTPAGSLDVQAGLYGVPRMQRKTAEILELIGLSDKANAYARSLSGGMRRRLLLGKALVHSPQILVLDEPTAGVDITLRNQLWENVRRLNDEGMTIILTTHYLEEAEQMCDEIAIINHGELIVRDTTSNLLSKLDSKTLVITPAEAVSRVVLPAEISQQTTEDGALRLSYRPANISDNEVLDHLRQAGVVIKDIQTDIPDLEDVFLSLTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RZZ9</accession>
    <name>A0A1M5RZZ9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, GntR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2766</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31393.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902045.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH31393">
        <property type="protein sequence ID" value="SHH31393"/>
        <property type="gene ID" value="SAMN05444003_2766"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011711">
        <property type="entry name" value="GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008920">
        <property type="entry name" value="TF_FadR/GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07729">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00035">
        <property type="entry name" value="HTHGNTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00895">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48008">
        <property type="entry name" value="SSF48008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="4">
        <location>
            <begin position="9"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH31393.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="255" mass="29019" checksum="1902BBF5F676408E" modified="2017-03-15" version="1">MPFQTVQQEKLSQSVVRQIEELILRGILRPGERLPSERELSEKMGVSRPSLREALSDLQDRGLLTSKAGAGVFVADVLGSAFAPALVTLFATHDSAVFDYISFRRDMEGLAAERAARLGSDTDLKVIDTIFKKMEVAQQKRNPTEEAALDADFHLAIIEASHNIIMLHMMRSMYELLREGVFYNRSVMFKQRMTRDHLLDQHRAINDALQERDPERAKAAVASHLDYVEQALADHQKAEKNEAFAQRRYEHEAKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S4B3</accession>
    <name>A0A1M5S4B3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2826</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32793.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH32793">
        <property type="protein sequence ID" value="SHH32793"/>
        <property type="gene ID" value="SAMN05444003_2826"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH32793.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="179" mass="20387" checksum="8C00DE099427FD0F" modified="2017-03-15" version="1">MEAIGGSLALSFLGNLLYQIFSNEWQNLSFSFDVVDMPDTQDPFAIASTLLKVTEQSYWDRDFETFASCFRIPHIIGSLEGDRIVETLEELRAIFDTMGAHYEALGALALRREAYEAVLVDNDNLRVMFTSQQELPNRVLTNKINFYSEVEREGEDWKITLTRAVSSDETLGPSFIPDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S5C2</accession>
    <name>A0A1M5S5C2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Iron complex transport system ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2863</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33686.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902194.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2863"/>
    <dbReference type="EnsemblBacteria" id="SHH33686">
        <property type="protein sequence ID" value="SHH33686"/>
        <property type="gene ID" value="SAMN05444003_2863"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="6"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="40"/>
            <end position="47"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH33686.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="261" mass="28423" checksum="AF661551ECF8FFC3" modified="2017-03-15" version="1">MTAATLSVQELSWAPAKSADLVLHPTSFELDAGRVLGIVGPNGAGKTSLLRLLYRYHRPTVGTVQVDGQDIWSMPARAVAQRVAAVLQEQPSDFALTVGEIVALGRTPHRRGFVGAVGARDLDIINHALDQLDLHELADRHLGTLSGGERQRVMVARALAQEPKLLILDEPTNHLDIRHQLEVLELIRNLPLTIVTSLHDLNLAAGVCDNILLLHSGRPIGFGTPSDVLTEKSVAHAFQVNARREQLSHSGNEHLTFHLQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SBN1</accession>
    <name>A0A1M5SBN1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Carbohydrate ABC transporter membrane protein 1, CUT1 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2887</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH35997.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902524.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2887"/>
    <dbReference type="EnsemblBacteria" id="SHH35997">
        <property type="protein sequence ID" value="SHH35997"/>
        <property type="gene ID" value="SAMN05444003_2887"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="20"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="187"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="228"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="278"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="322"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="376"/>
            <end position="404"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="191"/>
            <end position="403"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH35997.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="413" mass="45519" checksum="E4CEA5C8E46B6FE9" modified="2017-03-15" version="1">MTTMTPPTGTGPLARREARLAWGLLFPTIAAVALVVILPLLAIFWISFKPVGLADLRPPEMVVRADIRGDAEAVGDEITVRYRIRNSNQDKTISGVTLTQAWPAGLDPQEVDERCEISGGFIRCDFGDVEGGFRDQIRIPSIVGQDFLDSGGDLSGEPEVTGEADNILTNSEFTLENFAKVFDSDEFWGVLGVTLFYTIFGTIGALVFGLFAALLLNKSFRGQGILRGLYLFPYVAPVIAVAFAWILLFDPFSGSANALLIQMGVTESSIDFFGQRPLALIMVTIFEIWRYFPLSFLFILARMQSIDTDMYEAADMDGASPFQIFWSLSMPQLLGILSVLFLLRFIWTFNKFDDIFLLTGGNAGTRTLTVNVYEQAFAIGNIGAGAAVAVVIFCCLLIFSFFFFRYGNQEDGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SCS8</accession>
    <name>A0A1M5SCS8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2891</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36088.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2891"/>
    <dbReference type="EnsemblBacteria" id="SHH36088">
        <property type="protein sequence ID" value="SHH36088"/>
        <property type="gene ID" value="SAMN05444003_2891"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH36088.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="82" mass="8673" checksum="74D71A9E217F2FCC" modified="2017-03-15" version="1">MQCRKVNFRPNNGVDMGFLEKGRSTFLGCVALATVGLLYPTQIQATPFTTTVPGTGVALPDEYPEAGGVAMVLTGANGNIYY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SEV6</accession>
    <name>A0A1M5SEV6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Purine nucleoside phosphorylase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_2935</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>adenosine + H(+) + H2O = inosine + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:24408"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16335"/>
            <dbReference type="ChEBI" id="CHEBI:17596"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="EC" id="3.5.4.4"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="4">
            <dbReference type="Rhea" id="RHEA:24409"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>adenosine + phosphate = adenine + alpha-D-ribose 1-phosphate</text>
            <dbReference type="Rhea" id="RHEA:27642"/>
            <dbReference type="ChEBI" id="CHEBI:16335"/>
            <dbReference type="ChEBI" id="CHEBI:16708"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57720"/>
            <dbReference type="EC" id="2.4.2.1"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="2">
            <dbReference type="Rhea" id="RHEA:27643"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>inosine + phosphate = alpha-D-ribose 1-phosphate + hypoxanthine</text>
            <dbReference type="Rhea" id="RHEA:27646"/>
            <dbReference type="ChEBI" id="CHEBI:17368"/>
            <dbReference type="ChEBI" id="CHEBI:17596"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57720"/>
            <dbReference type="EC" id="2.4.2.1"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="1">
            <dbReference type="Rhea" id="RHEA:27647"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>phosphate + S-methyl-5'-thioadenosine = adenine + S-methyl-5-thio-alpha-D-ribose 1-phosphate</text>
            <dbReference type="Rhea" id="RHEA:11852"/>
            <dbReference type="ChEBI" id="CHEBI:16708"/>
            <dbReference type="ChEBI" id="CHEBI:17509"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58533"/>
            <dbReference type="EC" id="2.4.2.28"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="3">
            <dbReference type="Rhea" id="RHEA:11853"/>
        </physiologicalReaction>
    </comment>
    <comment type="similarity">
        <text evidence="5 9">Belongs to the purine nucleoside phosphorylase YfiH/LACC1 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37127.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902337.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2935"/>
    <dbReference type="EnsemblBacteria" id="SHH37127">
        <property type="protein sequence ID" value="SHH37127"/>
        <property type="gene ID" value="SAMN05444003_2935"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004000">
        <property type="term" value="F:adenosine deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017061">
        <property type="term" value="F:S-methyl-5-thioadenosine phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd16833">
        <property type="entry name" value="YfiH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.140.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003730">
        <property type="entry name" value="Cu_polyphenol_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038371">
        <property type="entry name" value="Cu_polyphenol_OxRdtase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011324">
        <property type="entry name" value="Cytotoxic_necrot_fac-like_cat"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30616">
        <property type="entry name" value="PTHR30616"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02578">
        <property type="entry name" value="Cu-oxidase_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64438">
        <property type="entry name" value="SSF64438"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00726">
        <property type="entry name" value="TIGR00726"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <keyword evidence="8" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001292"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00001600"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00007353"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU361274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH37127.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="251" mass="26769" checksum="417110CFF1676C57" modified="2017-03-15" version="1">MTLEIITDDSLSGVRHGFFTRAGGASSGIYEGLNCGTGSQDQDGIVAINRQRVAEAMGVESDGLRGVHQVHSADVIVVDGPSAEKPKADAIVTATKGVALSILTADCQPVLFADQEAGVIGAAHAGWKGAKDGVLENTVDAMVELGARVKNIVAVIGPSISQRAYEVGPEFFDAFVDEDESAARFFAQGAGDRMQFDLPAFGLAKLREAGVTQTSWTRHCTYSDPERFYSYRRSVHQKEADYGRLISVITL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SFX8</accession>
    <name>A0A1M5SFX8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Guanidinopropionase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2948</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the arginase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37426.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902364.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2948"/>
    <dbReference type="EnsemblBacteria" id="SHH37426">
        <property type="protein sequence ID" value="SHH37426"/>
        <property type="gene ID" value="SAMN05444003_2948"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016813">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006035">
        <property type="entry name" value="Ureohydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023696">
        <property type="entry name" value="Ureohydrolase_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11358">
        <property type="entry name" value="PTHR11358"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00491">
        <property type="entry name" value="Arginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036979">
        <property type="entry name" value="Arginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00116">
        <property type="entry name" value="ARGINASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52768">
        <property type="entry name" value="SSF52768"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51409">
        <property type="entry name" value="ARGINASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00742"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH37426.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="326" mass="35096" checksum="D7A0AC3C3104BA2E" modified="2017-03-15" version="1">MADKHDAAMMENLYWWGIPTLYRCPNEGPEGADIALVGVPHSVGNGTTERDQHLGPRALRNVSSVSRRVHGGFGIDPWASAKIVDVGDVPFPRANDNEACNEDITQFYKGIDAAGARPVSIGGDHSITGGIVQALGCGQITNGEPVCFLHLDAHTDVFTKVDHFLGAKKSAAHWGAYLADQGQVDPTHSMQIGLRGHARTLDWLQPSYDYGYNVVTMKEFRKRGLEDVVAQAREVLAGKPVYITFDLDCLDPTIAPGVSNIEPGEKGFDIDEAVGLLHAVRGLNIVGGDVVCMMPTKDSPNQITALTASAVMFEMISMMAENVARA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SGD3</accession>
    <name>A0A1M5SGD3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Hemolysin III</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2953</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37525.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902370.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2953"/>
    <dbReference type="EnsemblBacteria" id="SHH37525">
        <property type="protein sequence ID" value="SHH37525"/>
        <property type="gene ID" value="SAMN05444003_2953"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004254">
        <property type="entry name" value="AdipoR/HlyIII-related"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20855">
        <property type="entry name" value="PTHR20855"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03006">
        <property type="entry name" value="HlyIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="51"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="101"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="137"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="167"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="197"/>
            <end position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH37525.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="220" mass="23973" checksum="93905145F4B760F5" modified="2017-03-15" version="1">MRKPQTPYPNYAVSERIADGSMHLVGVMGAIVGACYLIIWSFGHLGTGQAIALTVYASALIATFFASAFYHMTPWESLRPRLRQIDHAAIYVKIAGTYTPLVAMIGSAFAYVILGVVWALAIFGVVTKLFFWQRPGWFSTGLYLAMGWLSVALIWELAPVVPTPTMVLIAVGGALYTVGVIFFMWDRLKFSNAIWHGFVVAASACFFAAITLGAMAVSMV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SGR2</accession>
    <name>A0A1M5SGR2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Hint domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2933</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37083.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2933"/>
    <dbReference type="EnsemblBacteria" id="SHH37083">
        <property type="protein sequence ID" value="SHH37083"/>
        <property type="gene ID" value="SAMN05444003_2933"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028992">
        <property type="entry name" value="Hedgehog/Intein_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13403">
        <property type="entry name" value="Hint_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hint_2" evidence="1">
        <location>
            <begin position="75"/>
            <end position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13403"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH37083.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="265" mass="29009" checksum="A943B7A19096B05E" modified="2017-03-15" version="1">MDTTLSTVAGLATENYSSSVQTDRYASQDGRSVRSRPLMRRYEIAHLNSSNEIEYVTRLAPAVKAFEDCFGVLGRGAILQTALGPTAVEDLLPGDQVMTSSSGLQTLLWKGSMTLVPNYENMRPESCSMTRIPADSFGLGRPTPDLVLGPAARILHKTTGIRTLTGSDAAFIPAADFVDQSQFISLTPASPVNVYQIGFEQHERVSVNGIEVESLHPGALHTLNLLPEYQQLLMSLFPHKIAFGDFGSMIHPRLRLKDLDIFETI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T479</accession>
    <name>A0A1M5T479_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Fatty acid desaturase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3230</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45551.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902882.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3230"/>
    <dbReference type="EnsemblBacteria" id="SHH45551">
        <property type="protein sequence ID" value="SHH45551"/>
        <property type="gene ID" value="SAMN05444003_3230"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005804">
        <property type="entry name" value="FA_desaturase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00487">
        <property type="entry name" value="FA_desaturase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="33"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="63"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="129"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="159"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="185"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="domain" description="FA_desaturase" evidence="2">
        <location>
            <begin position="34"/>
            <end position="273"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00487"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH45551.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="307" mass="35524" checksum="C82D562FB1217AF4" modified="2017-03-15" version="1">MVSRAELPTLLLIALCYGVFGAATYLAGSEGGALPVMILALVITLYSSLQHEVIHGHPFRKQIWNDALVFPAFGLFVPYLRFKETHLVHHFDPNLTDPYEDPETNFVDVLEWNKMSFLRRLGHKLNTTLLGRMTVGPIIGLGGFFRDDIKALLNGEKRLVWHYVQHLFGVAIVLFWLVTVTKFPVWLYVAAAYLGMSILRIRTYLEHQAHERAAARSVIIEDRGLLAFLFLNNNFHAVHHSHPRLVWHQLPKAFERKRAHFLKKNDGYYYRSYWSVFKGHFVRPKDGPVHPLWSKEPESLRNMRMGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T505</accession>
    <name>A0A1M5T505_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Carbohydrate ABC transporter ATP-binding protein, CUT1 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_3240</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45772.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902897.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH45772">
        <property type="protein sequence ID" value="SHH45772"/>
        <property type="gene ID" value="SAMN05444003_3240"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008643">
        <property type="term" value="P:carbohydrate transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03301">
        <property type="entry name" value="ABC_MalK_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015855">
        <property type="entry name" value="ABC_transpr_MalK-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013611">
        <property type="entry name" value="Transp-assoc_OB_typ2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08402">
        <property type="entry name" value="TOBE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="6">
        <location>
            <begin position="4"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="36"/>
            <end position="43"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH45772.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="366" mass="39300" checksum="158100EB2B7B5AC5" modified="2017-03-15" version="1">MATLDLLSINKSFGAAKVLHDISLAIEDKEFVVFVGPSGCGKSTLLRIIAGLEETTSGQIMIDGKDVSDAHPVDRGISMVFQSYALYPHLTVYENIAFPLRVQKMPQPEMDAAVNRAAEILQLTDKLQLKPGQLSGGQRQRVAIGRSIVRNPKVFLFDEPLSNLDAALRGDMRVELSQLHRSLEATMVYVTHDQVEAMTMADRIVVLNAGRVEQFGTPMELYHHPKTKFVASFIGQPNMNLLPAKVLGSDAKSLKVELDGGHQMVVPVEAGLVSKGDNVEVGIRPEHVSLGDSGLSVTVNVLERLGGVSITYGAVGNGTRFCASLPGDAAIREGTPVTLAVNPDDCHVFDANGDVLSRQAAPELAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T5E1</accession>
    <name>A0A1M5T5E1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Carbon-monoxide dehydrogenase small subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3231</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45573.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902884.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3231"/>
    <dbReference type="EnsemblBacteria" id="SHH45573">
        <property type="protein sequence ID" value="SHH45573"/>
        <property type="gene ID" value="SAMN05444003_3231"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002888">
        <property type="entry name" value="2Fe-2S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036884">
        <property type="entry name" value="2Fe-2S-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01799">
        <property type="entry name" value="Fer2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47741">
        <property type="entry name" value="SSF47741"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="1">
        <location>
            <begin position="2"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH45573.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="156" mass="16752" checksum="6D2E16FB218CB129" modified="2017-03-15" version="1">MSKISLTVNGRSISKEVSDNTLLVEFIRENLRLTGTHVGCDTSQCGACTVHVDGKSIKSCTMLAVEADGSQITTIEGIANGELHPMQQAFNDNHGLQCGFCTPGMIMAGIDMVNRYKASNKPLDEAAIRGELEGNICRCTGYHNIVRSIADASTKM</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T5G4</accession>
    <name>A0A1M5T5G4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, XRE family with cupin sensor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3248</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45942.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902910.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3248"/>
    <dbReference type="EnsemblBacteria" id="SHH45942">
        <property type="protein sequence ID" value="SHH45942"/>
        <property type="gene ID" value="SAMN05444003_3248"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013096">
        <property type="entry name" value="Cupin_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07883">
        <property type="entry name" value="Cupin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="28"/>
            <end position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH45942.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="208" mass="23067" checksum="6ECB75D1F4EE9ED2" modified="2017-03-15" version="1">MVQKLNQDPHATQQAREKVLEVAIGRAVRGHRKQQNMTVSNLSDLTGLSIGMLSKIENGNTSPSLSTMQSLANALSVPLTSFFRQYEERREAVHTKAGDGVETEREGTRAGHQYKLLGHIGSNSSGVIVEPYLIELTAESDTFETFQHDGIETIYMLEGAVDYRHGPNIFELRPGDTLFFDADSPHGPERLVKLPAKYLAVISYPQNQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T5Z6</accession>
    <name>A0A1M5T5Z6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">H+/Cl-antiporter ClcA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_3256</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46126.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902923.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH46126">
        <property type="protein sequence ID" value="SHH46126"/>
        <property type="gene ID" value="SAMN05444003_3256"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005247">
        <property type="term" value="F:voltage-gated chloride channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014743">
        <property type="entry name" value="Cl-channel_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001807">
        <property type="entry name" value="Cl-channel_volt-gated"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00654">
        <property type="entry name" value="Voltage_CLC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81340">
        <property type="entry name" value="SSF81340"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="39"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="81"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="104"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="165"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="205"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="239"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="280"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="305"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="330"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="354"/>
            <end position="378"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH46126.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="388" mass="40589" checksum="9F752A1FC47291EC" modified="2017-03-15" version="1">MRLTLLSAGYGFLAGIVAAFVLWLMELLAHFIWSGPETRWYIFTMTMVGGMILAVLRHWYAGSGLNEQIAGARMLESQKRRNTAFLAIMAIVAVGFGGAVGPEAGILAVVAEMSLLISMLIARDHAEARLIGEIGAAGALGGIYGSPPGAAVIAQEHPEAPKLRLYLAALTGLLGFILTVRMFLPENPLHIHLPDHVPAGDGTDIIFAVLPAILGAGAGVFFLLILPLITSVLSRWEHIWLQTLVGTALFAMLATAFPILRFSGHHELEEMLVWGQEFGMAALLGLAALKMLALALCLSSGWRGGAAFPLLFAGAAAGGAVVWLLPATPLTVALVSGMAAAITAGMGKPIAAMLIALLLIGPVAIWPLCVGALVGWGASKLAPPQVLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TAM0</accession>
    <name>A0A1M5TAM0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Tat (Twin-arginine translocation) pathway signal sequence</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_3309</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial solute-binding protein 7 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000009">
        <property type="protein sequence ID" value="SHH47835.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072903026.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000009.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3309"/>
    <dbReference type="EnsemblBacteria" id="SHH47835">
        <property type="protein sequence ID" value="SHH47835"/>
        <property type="gene ID" value="SAMN05444003_3309"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071702">
        <property type="term" value="P:organic substance transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018389">
        <property type="entry name" value="DctP_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019546">
        <property type="entry name" value="TAT_signal_bac_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038404">
        <property type="entry name" value="TRAP_DctP_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33376">
        <property type="entry name" value="PTHR33376"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03480">
        <property type="entry name" value="DctP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01409">
        <property type="entry name" value="TAT_signal_seq"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0574">Periplasm</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012206417" evidence="6">
        <location>
            <begin position="27"/>
            <end position="344"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH47835.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="344" mass="38582" checksum="394BD062F4F44748" modified="2017-03-15" version="1">MTTRRKFLTTAAVGAAAAPLATPALAQSTIKWRMQTYAGPALAAHVIDPAIEMFNKIAGDRMQIELFYADQLVPTGELFRAMQQGTIDAVQSDDDSMASPTDVTVFGGYFPFASRYSLDVPVLFNQYGLNEIWDEQYSAVGVKHISAGSWDPCHFATKDPIRSLEDLKGKRVFTFPTAGRFLSQFGVVPVTLPWEDIEVAVQTGELDGIAWSGITEDYTVGWADVTNYFLTNNISGAWAGSFFANMDRWNELPEDLQTLFRVCCDQSHYYRQWWYWGGEANLRVNGTKMELTSIPDEEWAQVENAAVAFWDEIASEGEVQAKVVDIFRKYNADMQKAGRPYRYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TBP8</accession>
    <name>A0A1M5TBP8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3315</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000010">
        <property type="protein sequence ID" value="SHH48139.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH48139">
        <property type="protein sequence ID" value="SHH48139"/>
        <property type="gene ID" value="SAMN05444003_3315"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH48139.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="291" mass="32276" checksum="CBB44A162437063C" modified="2017-03-15" version="1">MIRQIGLSAILIVSAEAAVGEIVAGGEFYEDRSGYPCFATLNTDAGKSVTLQLSDYKDVWSLTFIISDRASVYRRFFDSRGLRDEGAFEDAFEGVRIGECSFDFNDTSLFEVRRQDVDEKTAGIFSVDEQHNVARVLEAMADDGIEIEGLVSLDGTATVLSEFRSCSYAAMRLQEGERVETDFRAEYRMIFEGVFENWVTSMAQAEHCLATRFDDDAVSEVIDAAADAFYPGILNVRKRSEYRENLDGLLPMAKLSGMVDAETEGCLMAGRLADVSRMPVDRAIEEAAKLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TCL8</accession>
    <name>A0A1M5TCL8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3321</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000011">
        <property type="protein sequence ID" value="SHH48370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3321"/>
    <dbReference type="EnsemblBacteria" id="SHH48370">
        <property type="protein sequence ID" value="SHH48370"/>
        <property type="gene ID" value="SAMN05444003_3321"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH48370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="31" mass="3435" checksum="7F7008E32F3B02A9" modified="2017-03-15" version="1" fragment="single">RLEGMEGHARAADVRLAKYFPGQNFDLTAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TCZ2</accession>
    <name>A0A1M5TCZ2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">VPLPA-CTERM protein sorting domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3326</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000012">
        <property type="protein sequence ID" value="SHH48546.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072903049.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000012.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3326"/>
    <dbReference type="EnsemblBacteria" id="SHH48546">
        <property type="protein sequence ID" value="SHH48546"/>
        <property type="gene ID" value="SAMN05444003_3326"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016788">
        <property type="term" value="F:hydrolase activity, acting on ester bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001087">
        <property type="entry name" value="GDSL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00657">
        <property type="entry name" value="Lipase_GDSL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012702939" evidence="2">
        <location>
            <begin position="21"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="293"/>
            <end position="312"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH48546.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="321" mass="33457" checksum="30D788900BA0CE06" modified="2017-03-15" version="1">MKLKKLGLIATLSVASGISAATVSASTLEQYGFSDVVIFGDSLSDPVNNFGPPTSFIYPNDQVTNGDTWAVKLGYDDPSTNNFAVSGATAKTDGGGDFMEQIETFMGTNQTLGDSALAIVWLGGNDIANALFGDPSNAVNRLTEGVTALATGLAALATTGFDQALVFTSPDIGDTPLAKASGVEGAAFASFLTTEFNRALVGIGEAEVAQGVTLNELIDLAFLDVPTLALEAKGTIDYTNDEDACFDGQTFVNGCDLANANGFFYYDPFHPTDTTHGFIAQKAELAAEQLAPVPLPAGFVLMGTVLAGFGFVSRRQRKQQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L3J3</accession>
    <name>A0A1M5L3J3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Adenosylmethionine-8-amino-7-oxononanoate aminotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0077</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59510.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898419.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0077"/>
    <dbReference type="EnsemblBacteria" id="SHG59510">
        <property type="protein sequence ID" value="SHG59510"/>
        <property type="gene ID" value="SAMN05444003_0077"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00610">
        <property type="entry name" value="OAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005814">
        <property type="entry name" value="Aminotrans_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00202">
        <property type="entry name" value="Aminotran_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000521">
        <property type="entry name" value="Transaminase_4ab_Lys_Orn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00600">
        <property type="entry name" value="AA_TRANSFER_CLASS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="1 2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG59510.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="455" mass="49916" checksum="D78272982C2B0BFE" modified="2017-03-15" version="1">MNKHAPNSWEARADEHSFYGFTDLPTIDDRGAIVLTHGNGPYVYDVHGREYLDGNSGLWNMVAGFDHKGMAEAAKAQYDRFPGYHAFFGRMSDQTVMLSEKLIEVSPFERGKVFYTNSGSEANDTMVKMLWMLGWAEGTPQKRKIITRINGYHGVTAVAASMTGKPYNHVFGLPFDEFIHVGCPHYWRFGHDGETEAEFTARLAQELEDTIQKEGADTIAGFFAEPVMGAGGVIPPSEGYFQAIQKVLKKHNIPLISDEVITGFGRTGETWGCQTYDFVPDVIISSKNLTAGYFPMGAVILGPEMTDRMQAASEKFDEFPHGFTASGHPVGCAVALKAIDVIMNEGLIDNVRTLTPLFEEGMARIAEHKNIGEWRGKGLMGALEAVADKNTKEPFDGSLSVSERIANACTDQGLICRPLGQAIVLCPAFILTPSQMDEMFGKLEKALDGVFAEVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L3V2</accession>
    <name>A0A1M5L3V2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Amino acid ABC transporter ATP-binding protein, PAAT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_0087</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59697.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898429.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0087"/>
    <dbReference type="EnsemblBacteria" id="SHG59697">
        <property type="protein sequence ID" value="SHG59697"/>
        <property type="gene ID" value="SAMN05444003_0087"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015424">
        <property type="term" value="F:ABC-type amino acid transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030679">
        <property type="entry name" value="ABC_ATPase_HisP-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF039085">
        <property type="entry name" value="ABC_ATPase_HisP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="6"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="38"/>
            <end position="45"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG59697.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="256" mass="27854" checksum="61FD1D3AAE68AD58" modified="2017-03-15" version="1">MTTPVIQIKDLHKSYGALEVLKGVDIVAGTGDVVSLIGSSGSGKSTLLRCTNLLEDSQSGEILFDGEPVKWSGSGLNRRPADRAQMIRIRTNLSMVFQQFNLWAHMTILQNVMEAPVTVLGRDKAEVEASALKYLDKVGIGDKCDVYPAQLSGGQQQRAAIARALCMEPKALLFDEPTSALDPELEQEVVRVIKDLAAEGRTMIIVTHDMRLASDVSDHVVFLHQGKIEEEGPPEAVFKNPQTERLKGFLSATVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L4M8</accession>
    <name>A0A1M5L4M8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Periplasmic serine endoprotease DegP-like</fullName>
            <ecNumber evidence="5">3.4.21.107</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0105</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>Acts on substrates that are at least partially unfolded. The cleavage site P1 residue is normally between a pair of hydrophobic residues, such as Val-|-Val.</text>
            <dbReference type="EC" id="3.4.21.107"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the peptidase S1C family.</text>
    </comment>
    <dbReference type="EC" id="3.4.21.107" evidence="5"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60064.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898461.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0105"/>
    <dbReference type="EnsemblBacteria" id="SHG60064">
        <property type="protein sequence ID" value="SHG60064"/>
        <property type="gene ID" value="SAMN05444003_0105"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.42.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001478">
        <property type="entry name" value="PDZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036034">
        <property type="entry name" value="PDZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011782">
        <property type="entry name" value="Pept_S1C_Do"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001940">
        <property type="entry name" value="Peptidase_S1C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13180">
        <property type="entry name" value="PDZ_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00834">
        <property type="entry name" value="PROTEASES2C"/>
    </dbReference>
    <dbReference type="SMART" id="SM00228">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50156">
        <property type="entry name" value="SSF50156"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="SSF50494"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02037">
        <property type="entry name" value="degP_htrA_DO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50106">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 7" id="KW-0645">Protease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0720">Serine protease</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="5" id="KW-0346">Stress response</keyword>
    <feature type="domain" description="PDZ" evidence="6">
        <location>
            <begin position="274"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="domain" description="PDZ" evidence="6">
        <location>
            <begin position="391"/>
            <end position="483"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="4">
        <location>
            <position position="124"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="4">
        <location>
            <position position="156"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="4">
        <location>
            <position position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001772"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR611782-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU364067"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG60064.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="495" mass="51712" checksum="814AB9A1554266F1" modified="2017-03-15" version="1">MSSQALVIEEQSLAPRRTITALVAGAAIALAMAVGTPTPSYGQDRPATFADLAEQVSPSVVNITTSTVVAGQTGPQGIVPEGSPFEDFFEDLQPEGDNNRQRRSSALGSGFVISEDGYIVTNNHVIEGADEILVEFYPGGEPGVPAELVGTDPNTDIALLKVDLEGLPFVEFGDSNAEGARVGDWVMAMGNPLGQGFSVSAGIVSARNRALSGTYDDYIQTDAAINRGNSGGPLFNMDGEVIGVNTAILSPNGGSIGIGFAMSSAVVTNVVDQLEEFGETRRGWLGVRIQDVTPDMVDAIDGLETARGALVTEVPPGPAEDAGMASGDVITIFDGVEIEDTRELVRVVGNSPVGKEVAVTVLRSGDETDLTVVLGRRETAEAVAFPAPEPEEEVAPESTELLGLSLSVVTEELQDQYGITGEDGLVITAIDPESEAASKGLLEGDVITEAGQQKVASVEDFEARIEEAKEAGRKSLLLLVRRGGDPRFVALGLEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LAU5</accession>
    <name>A0A1M5LAU5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Aminoglycoside/hydroxyurea antibiotic resistance kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0171</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61533.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG61533">
        <property type="protein sequence ID" value="SHG61533"/>
        <property type="gene ID" value="SAMN05444003_0171"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016773">
        <property type="term" value="F:phosphotransferase activity, alcohol group as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006468">
        <property type="term" value="P:protein phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019748">
        <property type="term" value="P:secondary metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006748">
        <property type="entry name" value="NH2Glyco/OHUrea_AB-resist_kin"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04655">
        <property type="entry name" value="APH_6_hur"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG61533.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="285" mass="31779" checksum="1AA0755FC7C5D7F1" modified="2017-03-15" version="1">MGSANPKLERKAAQVAKRWGLTLEQQLVAEKNRIAFKVSSPWGPAALKVYRDLNAAGERSAASFYRKLPKGLGPTLYKTSPLNRAILVEWLDGPNLGELRASGQEDEANVYLAQVTRALYRAKIQIPFRYLRLAKTMEQKLKVASSVTITDEFAKALDQVANLLNELNNTTQTEQVIHGDLHYENVILTSEGPKLFDPKVYRADPAAELSKGLLAGHADRPIEEFSDRITKRADALAPATDSQPERLIGWSTVLYATRLFKAKHKVVHQSDFEKLDLLLKLSATM</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LDV5</accession>
    <name>A0A1M5LDV5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0237</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63208.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898652.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0237"/>
    <dbReference type="EnsemblBacteria" id="SHG63208">
        <property type="protein sequence ID" value="SHG63208"/>
        <property type="gene ID" value="SAMN05444003_0237"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG63208.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="291" mass="33149" checksum="16F78E839D59CF3E" modified="2017-03-15" version="1">MKIALHIGANCTDDDKLLKSLLKNADTFVKERIKVPGPSKYRRILRETIQNLDGAKPEEATRLYIQDVIVDGEEPQRLIMSNSNFICIPNRMFDGGTFYPQTEDKLRGVAALFPDADFEIFIGLRNPATFLPAAFSKSKAATLDAFLKGFHPTHIRWSDIIRRINHVMPNARVTVWCNEDTPLIWAELIRAFADLPETHQITGGFDLLAKIMAPDGMKRMLDYMRSHPPKSEAHKRKIIAAFLDKYALDEEIEETVDLQGLDEQMVEDLTEIYDQDVEVISQMSGVRFIEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LH10</accession>
    <name>A0A1M5LH10_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Amidophosphoribosyltransferase</fullName>
            <shortName evidence="5">ATase</shortName>
            <ecNumber evidence="5">2.4.2.14</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Glutamine phosphoribosylpyrophosphate amidotransferase</fullName>
            <shortName evidence="5">GPATase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">purF</name>
        <name evidence="11" type="ORF">SAMN05444003_0282</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5 6">
            <text>5-phospho-beta-D-ribosylamine + diphosphate + L-glutamate = 5-phospho-alpha-D-ribose 1-diphosphate + H2O + L-glutamine</text>
            <dbReference type="Rhea" id="RHEA:14905"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:58681"/>
            <dbReference type="EC" id="2.4.2.14"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5 8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="5 8">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5 9">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="5 9">Binds 1 [4Fe-4S] cluster per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 5 6">Purine metabolism; IMP biosynthesis via de novo pathway; N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-alpha-D-ribose 1-diphosphate: step 1/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 5 6">In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.14" evidence="5"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64265.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0282"/>
    <dbReference type="EnsemblBacteria" id="SHG64265">
        <property type="protein sequence ID" value="SHG64265"/>
        <property type="gene ID" value="SAMN05444003_0282"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00124"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004044">
        <property type="term" value="F:amidophosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009113">
        <property type="term" value="P:purine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00715">
        <property type="entry name" value="GPATase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01931">
        <property type="entry name" value="PurF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017932">
        <property type="entry name" value="GATase_2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005854">
        <property type="entry name" value="PurF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035584">
        <property type="entry name" value="PurF_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13537">
        <property type="entry name" value="GATase_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000485">
        <property type="entry name" value="Amd_phspho_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01134">
        <property type="entry name" value="purF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51278">
        <property type="entry name" value="GATASE_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="5 6 11" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="5 9" id="KW-0408">Iron</keyword>
    <keyword evidence="5 9" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5 8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 5 6" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glutamine amidotransferase type-2" evidence="10">
        <location>
            <begin position="20"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="5 7">
        <location>
            <position position="20"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5 9">
        <location>
            <position position="259"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 8">
        <location>
            <position position="306"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 8">
        <location>
            <position position="368"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 8">
        <location>
            <position position="369"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 9">
        <location>
            <position position="405"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 9">
        <location>
            <position position="462"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 9">
        <location>
            <position position="465"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010138"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR000485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000485-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000485-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000485-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG64265.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="489" mass="53232" checksum="9A9356DF84678E2A" modified="2017-03-15" version="1">MSSQMPPAHPFDDDKLKEECGVFGVIGVSDASNFIALGLHALQHRGQEAGGIVTHDPETGFNQMRRFGLVRDNFTSADTMAKIPGGIGIGHVRYSTAGSKGQTAIRDVQPFFGEFSMGGAAIAHNGNITNALSLRRELIERGSIFQSTSDSECIIHLMARSMGRNIPDRMEEALRKVEGAFSVVAMTRTKLIGCRDPLGVRPLVLGKVGDGWVLASETCALDIIGADFVREIEPGEMVVINGSGVQSHFPFRPAASRFCIFEHVYFSRPDSQLGGRSVYETRENIGRELAKENPVDADLVCPVPDSGTPAAIGYSLESGIPYAMGIIRNNYMGRTFIEPTEQIRNMGVRLKLNVNRALIKGKRVILVDDSVVRGTTSRKIKEMILDAGAAEVHFRIASPPTAWPCFYGVDTPQREKLLAATMSEEEMRDHLGVDSLRFISLDGLYRAVGEANGRDSSCPAYCDACFSGEYPVAPSDMIEDGFQMKTAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LHS7</accession>
    <name>A0A1M5LHS7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0296</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64577.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898729.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG64577">
        <property type="protein sequence ID" value="SHG64577"/>
        <property type="gene ID" value="SAMN05444003_0296"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="42"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG64577.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="94" mass="9794" checksum="01F230FA28F5DC80" modified="2017-03-15" version="1">MFGFLIALGAGFLTPFLEKPLAEPLAKAMEGQIKVEAGEMRLLAFMIAMLIGAICCAALGTGSMFSIVIGASLGYFGLRIVDVIKGAVDGKPKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LK50</accession>
    <name>A0A1M5LK50_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Gamma-butyrobetaine dioxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_0345</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the gamma-BBH/TMLD family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65514.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898796.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0345"/>
    <dbReference type="EnsemblBacteria" id="SHG65514">
        <property type="protein sequence ID" value="SHG65514"/>
        <property type="gene ID" value="SAMN05444003_0345"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2020.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010376">
        <property type="entry name" value="GBBH-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038492">
        <property type="entry name" value="GBBH-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042098">
        <property type="entry name" value="TauD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003819">
        <property type="entry name" value="TauD/TfdA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06155">
        <property type="entry name" value="GBBH-like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02668">
        <property type="entry name" value="TauD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 9" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GBBH-like_N" evidence="8">
        <location>
            <begin position="6"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="domain" description="TauD" evidence="7">
        <location>
            <begin position="120"/>
            <end position="357"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008654"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02668"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF06155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG65514.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="379" mass="41796" checksum="5636D77B8B50F7F1" modified="2017-03-15" version="1">MDVSVSEDGGILTLATQQNTIRFHAIWLRDNSPDPDTKSSGNGQRLIALRDIPKDIRISNVQADGGSLDITFAPEEKTASFDLGWLVENAYDIGSNQGNGWLSDEVTKWDSTLQSSVPSAKLSDLAQRGDIYSDWIEKIARYGFGKVEGGPVSEGALFDVVDLFGFVRETNYGKLFEVRTEVNPTNLAFTGLGLQAHTDNPYRDPVPTIQVLYCLESSAAGGENMVVDGFACALRLKEESPEHFDVLSEYCARFEYAGEDGVCLTSKRPLIELAPDGELIGVRFNNRSLSAVTDVPFENMGLWYEAYRRLGEIIDDPAMEVVFRLEPGEAFIVDNTRVLHARKAYSGTGKRWLQGCYADKDGLLSTRNALRRKAGKGAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LRJ4</accession>
    <name>A0A1M5LRJ4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">2-dehydro-3-deoxy-phosphogluconate aldolase</fullName>
            <ecNumber evidence="3">4.1.2.14</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0439</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>2-dehydro-3-deoxy-6-phospho-D-gluconate = D-glyceraldehyde 3-phosphate + pyruvate</text>
            <dbReference type="Rhea" id="RHEA:17089"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:57569"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="EC" id="4.1.2.14"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the KHG/KDPG aldolase family.</text>
    </comment>
    <dbReference type="EC" id="4.1.2.14" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67668.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898936.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0439"/>
    <dbReference type="EnsemblBacteria" id="SHG67668">
        <property type="protein sequence ID" value="SHG67668"/>
        <property type="gene ID" value="SAMN05444003_0439"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008675">
        <property type="term" value="F:2-dehydro-3-deoxy-phosphogluconate aldolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd00452">
        <property type="entry name" value="KDPG_aldolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000887">
        <property type="entry name" value="Aldlse_KDPG_KHG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031337">
        <property type="entry name" value="KDPG/KHG_AS_1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30246">
        <property type="entry name" value="PTHR30246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01081">
        <property type="entry name" value="Aldolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01182">
        <property type="entry name" value="eda"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00159">
        <property type="entry name" value="ALDOLASE_KDPG_KHG_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0456">Lyase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000654"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG67668.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="213" mass="21678" checksum="57478357B760D8F0" modified="2017-03-15" version="1">MTPQQASIEAAKVCNLAPVVPVLVLKDASKAKGLATALVAGGLPALEVTLRTDAALDAIREMASVEGGVVGAGTLLTPRDVEKAKEAGAQFGVSPGATDILLEACEANELPLLPGAATSSEAMRLLERGYNVQKFFPAEANGGAKTLKAIGAPIPQVSFCPTGGISLKNANEYLSLSNTLCVGGSWVAPQDMIANEDWAGIEALAAEAAALPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LSA7</accession>
    <name>A0A1M5LSA7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Glyceraldehyde-3-phosphate dehydrogenase</fullName>
            <ecNumber evidence="8">1.2.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_0453</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.-" evidence="8"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67977.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898960.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0453"/>
    <dbReference type="EnsemblBacteria" id="SHG67977">
        <property type="protein sequence ID" value="SHG67977"/>
        <property type="gene ID" value="SAMN05444003_0453"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006006">
        <property type="term" value="P:glucose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020831">
        <property type="entry name" value="GlycerAld/Erythrose_P_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020830">
        <property type="entry name" value="GlycerAld_3-P_DH_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020829">
        <property type="entry name" value="GlycerAld_3-P_DH_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020828">
        <property type="entry name" value="GlycerAld_3-P_DH_NAD(P)-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006424">
        <property type="entry name" value="Glyceraldehyde-3-P_DH_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43148">
        <property type="entry name" value="PTHR43148"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02800">
        <property type="entry name" value="Gp_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00044">
        <property type="entry name" value="Gp_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000149">
        <property type="entry name" value="GAP_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00078">
        <property type="entry name" value="G3PDHDRGNASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00846">
        <property type="entry name" value="Gp_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01534">
        <property type="entry name" value="GAPDH-I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00071">
        <property type="entry name" value="GAPDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0520">NAD</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2 8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Gp_dh_N" evidence="9">
        <location>
            <begin position="3"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="region of interest" description="Glyceraldehyde 3-phosphate binding" evidence="4">
        <location>
            <begin position="150"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="region of interest" description="Glyceraldehyde 3-phosphate binding" evidence="4">
        <location>
            <begin position="209"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="3">
        <location>
            <position position="151"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="12"/>
            <end position="13"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="36"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="80"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="120"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="181"/>
        </location>
        <ligand>
            <name>D-glyceraldehyde 3-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="232"/>
        </location>
        <ligand>
            <name>D-glyceraldehyde 3-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="314"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="site" description="Activates thiol group during catalysis" evidence="6">
        <location>
            <position position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007406"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000149-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000149-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000149-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000149-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000397"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU361160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM00846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG67977.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="333" mass="35581" checksum="5768B244157EB37C" modified="2017-03-15" version="1">MAVKVAINGFGRIGRNVLRAIIESGRTDIEVVAINDLGPVETNAHLLRFDSVHGRFPAEVKTTETTIDVGRGPIEVTAIRNPADLPWSHVDVVMECTGIFTSKEACQPHLENGSSRVLISAPGKNADKTIVYGVNDGTLTSDDIVVSNASCTTNCLSPVAKVLNDAVGITKGFMTTIHSYTGDQPTLDTMHKDLYRARAAALSMIPTSTGAAKAVGLVLPELNGKLDGVAIRVPTPNVSVVDLTFEASRATTVEEINAAIIAAADGPLKGVLGYTDLPMVSSDFNHDPHSSIFHLDQTKVLDDNMVRILSWYDNEWGFSNRMADTAVAMGKLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LSN1</accession>
    <name>A0A1M5LSN1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Glyceraldehyde 3-phosphate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_0455</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68021.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898962.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0455"/>
    <dbReference type="EnsemblBacteria" id="SHG68021">
        <property type="protein sequence ID" value="SHG68021"/>
        <property type="gene ID" value="SAMN05444003_0455"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006006">
        <property type="term" value="P:glucose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020831">
        <property type="entry name" value="GlycerAld/Erythrose_P_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020829">
        <property type="entry name" value="GlycerAld_3-P_DH_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020828">
        <property type="entry name" value="GlycerAld_3-P_DH_NAD(P)-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006424">
        <property type="entry name" value="Glyceraldehyde-3-P_DH_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43148">
        <property type="entry name" value="PTHR43148"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02800">
        <property type="entry name" value="Gp_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00044">
        <property type="entry name" value="Gp_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000149">
        <property type="entry name" value="GAP_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00078">
        <property type="entry name" value="G3PDHDRGNASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00846">
        <property type="entry name" value="Gp_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01534">
        <property type="entry name" value="GAPDH-I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0520">NAD</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Gp_dh_N" evidence="8">
        <location>
            <begin position="3"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="region of interest" description="Glyceraldehyde 3-phosphate binding" evidence="4">
        <location>
            <begin position="150"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="region of interest" description="Glyceraldehyde 3-phosphate binding" evidence="4">
        <location>
            <begin position="209"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="3">
        <location>
            <position position="151"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="12"/>
            <end position="13"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="120"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="181"/>
        </location>
        <ligand>
            <name>D-glyceraldehyde 3-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="232"/>
        </location>
        <ligand>
            <name>D-glyceraldehyde 3-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="314"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="site" description="Activates thiol group during catalysis" evidence="6">
        <location>
            <position position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007406"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000149-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000149-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000149-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000149-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000397"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG68021.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="333" mass="35761" checksum="DBD99B08D44B366D" modified="2017-03-15" version="1">MTVTLGINGFGRIGRCTLAHITEAARNDVQVVKINATGPIETNAHLLKYDSVHGRFGNEVRVDGNTLDLGRGPIEVMSTYDPTELNWDGIDVVLECTGKFNDGQKSSVHFDQGAKKVLISAPATNVDRTVVYGVNHRDMLANEKMISNGSCTTNCLAPLAKVLNDAIGIERGIMTTIHSYTGDQPTLDRRHNDLYRARAAAMAMIPTSTGAARALGEVLPELSGKLDGTAMRVPTPNVSAVDLTFEAGKDVTVNDVNEIVAEAAAGYMGMVLGYDAEAKVSIDFNHTTESSIFAPDQTKVVGGRTVRVLAWYDNEWGFSARMADVASAMGRLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LVK4</accession>
    <name>A0A1M5LVK4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Lipoprotein-anchoring transpeptidase ErfK/SrfK</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_0502</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the YkuD family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69098.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0502"/>
    <dbReference type="EnsemblBacteria" id="SHG69098">
        <property type="protein sequence ID" value="SHG69098"/>
        <property type="gene ID" value="SAMN05444003_0502"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071972">
        <property type="term" value="F:peptidoglycan L,D-transpeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd16913">
        <property type="entry name" value="YkuD_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005490">
        <property type="entry name" value="LD_TPept_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038063">
        <property type="entry name" value="Transpep_catalytic_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03734">
        <property type="entry name" value="YkuD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141523">
        <property type="entry name" value="SSF141523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="YkuD" evidence="5">
        <location>
            <begin position="107"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="39"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF03734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG69098.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="246" mass="26879" checksum="668EACED54C3B633" modified="2017-03-15" version="1">MSATSRRKFMGGAAALFSGPIATPLLGQEALEEIAEQRAAEAALAAAAPPADPAPRPPRSNPANWDGWDARVTPANYDPATSNPWGLHPRFLPVRVQANSGLKPGDIHVDAVARYLYHIQPDGTAMRYGVAIARGSLYEPGVYTIRRKSKWPTWRPTDAMIEREPEQFERFKDGMDGGPSNPLGSRALYLYVGNRDTYLRIHGTPSPRSIGGRASSGCVRMVMRHIIDLYDNVQTGSTAHLYPAET</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LVW6</accession>
    <name>A0A1M5LVW6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cytochrome c-type biogenesis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0504</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69146.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0504"/>
    <dbReference type="EnsemblBacteria" id="SHG69146">
        <property type="protein sequence ID" value="SHG69146"/>
        <property type="gene ID" value="SAMN05444003_0504"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017004">
        <property type="term" value="P:cytochrome complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003834">
        <property type="entry name" value="Cyt_c_assmbl_TM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02683">
        <property type="entry name" value="DsbD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="60"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="95"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="136"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="177"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="217"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="domain" description="DsbD" evidence="2">
        <location>
            <begin position="20"/>
            <end position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG69146.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="250" mass="26570" checksum="998993F90E61CBD4" modified="2017-03-15" version="1">MDAVTLLDATLLPAIAIAVFAGLLSFLSPCVLPIVPPYLAYMGGVSVGDMDEERAARKRVFTAALFFVLGLSTVFIFLGMAVSAVGRAFLQYQDWFIYGAGIIVVIFGLHFLGVFRIGFLQKEARLDAGDRGGSSFGAYVLGLAFAFGWTPCIGPILGAILGLAASEADVARGTTLLAAYALGLGIPFLLVAAFFPRLKGAMAWMKRHMVAIERVSGVLLVTVGVLMLTGQFTALSYWLFEKFPALAVLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LXH3</accession>
    <name>A0A1M5LXH3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">LPS-assembly protein LptD</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">lptD</name>
        <name evidence="3" type="ORF">SAMN05444003_0532</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Component of the lipopolysaccharide transport and assembly complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the LptD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69738.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899065.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0532"/>
    <dbReference type="EnsemblBacteria" id="SHG69738">
        <property type="protein sequence ID" value="SHG69738"/>
        <property type="gene ID" value="SAMN05444003_0532"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043165">
        <property type="term" value="P:Gram-negative-bacterium-type cell outer membrane assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015920">
        <property type="term" value="P:lipopolysaccharide transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010033">
        <property type="term" value="P:response to organic substance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01411">
        <property type="entry name" value="LPS_assembly_LptD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020889">
        <property type="entry name" value="LipoPS_assembly_LptD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007543">
        <property type="entry name" value="LptD_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04453">
        <property type="entry name" value="LptD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013415646" description="LPS-assembly protein LptD" evidence="1">
        <location>
            <begin position="19"/>
            <end position="697"/>
        </location>
    </feature>
    <feature type="domain" description="LptD" evidence="2">
        <location>
            <begin position="264"/>
            <end position="600"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01411"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04453"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG69738.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="697" mass="77800" checksum="9447220A09648B57" modified="2017-03-15" version="1" precursor="true">MRWLVPILFWFFATPVLSQGVASLVADSISIENGDRLIASGGVEAFFGDQTMTAEQVIFDQTTDQLDIVGPIVIRTNNGAVFTAERATLDPQLENGLLRGARLVLNQQIQLAANQINRVDGRYSQLYKSAVTSCQVCGTEIPLWQIRAERVIHDQVERQLYFQNATLRIRNIPILWIPRLRLPDPTLERATGFLIPRIRTTDRLSTGIKVPYYITVGDHSDLTLIPYLSTETRTLEARYRQAFLTGEIEVNLAVSEDTLRPDITRGYIVAEGSFELPSDFKLEFDIENATDPAYLLEYGYSSKDRLDSALAISRIRDSDFFTGSLTYYETLRDDETNSTLPPVVADLSYERRLRNVLGGLLNWRLDADAIAREADGADAGRDLSRVGTEVSWHRNWISGTGLVTSSDVRLGADFFRISDDPTFDESQFRVTSSATVVLSYPLISRTEYSQNLLEPLVAVSFRNVTGDPTPNEDSTRPELDAGNLLWPDRLPGQDVAETGMSTAIGLRWTHRTTAGRQARLTFGKVYQESANLAFNQGSGLDGTVSDWLIAAQLDLFDGLRFDGRVLLSDNGETTLATAGLDWETERLDLAANYIWQTSDQDLRTEAISEWSFDTAYRISDKWKVEFDGRYDVVADEPTRASLGLEWRNECTIVDLTVSRRFTSSTNIEPSTDFGLSIELTGFSAGGSIAGPARRCNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LYE1</accession>
    <name>A0A1M5LYE1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0545</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70038.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899086.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0545"/>
    <dbReference type="EnsemblBacteria" id="SHG70038">
        <property type="protein sequence ID" value="SHG70038"/>
        <property type="gene ID" value="SAMN05444003_0545"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="60"/>
            <end position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG70038.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="79" mass="8360" checksum="19197FB5DD5DE7A5" modified="2017-03-15" version="1">MSFIDDMGMALADEALAEAAASGDEKLVDRIATMLGASSQSLEEAYLTGIRVRRAEARAKEMIDESRKKRSADAAPAAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M1W1</accession>
    <name>A0A1M5M1W1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Aquaporin Z</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_0600</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the MIP/aquaporin (TC 1.A.8) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG71245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899154.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0600"/>
    <dbReference type="EnsemblBacteria" id="SHG71245">
        <property type="protein sequence ID" value="SHG71245"/>
        <property type="gene ID" value="SAMN05444003_0600"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015267">
        <property type="term" value="F:channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1080.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023271">
        <property type="entry name" value="Aquaporin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034294">
        <property type="entry name" value="Aquaporin_transptr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000425">
        <property type="entry name" value="MIP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022357">
        <property type="entry name" value="MIP_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45724">
        <property type="entry name" value="PTHR45724"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00230">
        <property type="entry name" value="MIP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00783">
        <property type="entry name" value="MINTRINSICP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81338">
        <property type="entry name" value="SSF81338"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00221">
        <property type="entry name" value="MIP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="5"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="30"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="77"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="125"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="160"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="201"/>
            <end position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG71245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="229" mass="22954" checksum="65F16282A23B110D" modified="2017-03-15" version="1">MSKPFFAEVIGTFILVFFGCGAAVFMGDEIGMLGISFAFGLAIVAAAYSVGNISGAHLNPAVSLGVLLAGKMESSAFVTYVIAQIIGAIVAAFALLMIANGQPSYDIAVTGLGQNLYGPGTAGEYGLTSALLFEGIATFLFVTVILGATQANAPAMMAGLAIGLTLAAIHMVGIIITGVSVNPARSIGPAIFAGGQALSDLWVFIVAPLVGGALAGVIFKMGLTSAEDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M4N4</accession>
    <name>A0A1M5M4N4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Phosphate ABC transporter ATP-binding protein, PhoT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_0637</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899207.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0637"/>
    <dbReference type="EnsemblBacteria" id="SHG72221">
        <property type="protein sequence ID" value="SHG72221"/>
        <property type="gene ID" value="SAMN05444003_0637"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015415">
        <property type="term" value="F:ATPase-coupled phosphate ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005315">
        <property type="term" value="F:inorganic phosphate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03260">
        <property type="entry name" value="ABC_PstB_phosphate_transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015850">
        <property type="entry name" value="ABC_transpr_PstB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005670">
        <property type="entry name" value="Phosp_transpt1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43423">
        <property type="entry name" value="PTHR43423"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43423:SF3">
        <property type="entry name" value="PTHR43423:SF3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00972">
        <property type="entry name" value="3a0107s01c2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="1" id="KW-0592">Phosphate transport</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="19"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="51"/>
            <end position="58"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022592"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG72221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="266" mass="29714" checksum="FBECED67C6B33FB8" modified="2017-03-15" version="1">MEDLAYMDRQMSTEQDIKISAKNVQVYYADNHAIKDVNVDIADKTVTAFIGPSGCGKSTFLRCINRMNDTIDVCRVEGAIKIDGEDIYDKRVDPVQLRAKVGMVFQKPNPFPKSIYDNVAYGPRIHGLAKNRAELDDIVEKALRRGAIWDEVKDRLDAPGTGLSGGQQQRLCIARAVATEPQVLLMDEPCSALDPIATAQVEELIDELRQNYSVVIVTHSMQQAARVSQKTAFFHLGNLVEYDDTDKIFTNPEDERTESYISGRIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M561</accession>
    <name>A0A1M5M561_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transcriptional regulator, IclR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_0646</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72454.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899224.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0646"/>
    <dbReference type="EnsemblBacteria" id="SHG72454">
        <property type="protein sequence ID" value="SHG72454"/>
        <property type="gene ID" value="SAMN05444003_0646"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014757">
        <property type="entry name" value="Tscrpt_reg_IclR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005471">
        <property type="entry name" value="Tscrpt_reg_IclR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09339">
        <property type="entry name" value="HTH_IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01614">
        <property type="entry name" value="IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00346">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51077">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51078">
        <property type="entry name" value="ICLR_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH iclR-type" evidence="4">
        <location>
            <begin position="30"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="domain" description="IclR-ED" evidence="5">
        <location>
            <begin position="92"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG72454.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="278" mass="31021" checksum="FF12D1AE2E8EF7B2" modified="2017-03-15" version="1">MEHQKEADSGLRRSRGRPRDWHDKTEQNTIKSLDRAMQVFEYLSQEQGKPLSLLAEETGQSPATLYRILVTLEGRGLVEFDAENQIWHIGSQAFVIGARFLRRTSLVERARPILRRLMEATGETANLGVEKGGMVLFLSQVETHENIRAFFPPGTLSPMHSSGIGKALLSQMSDDRFGQWLKDQQLEKFTDRTLANADNLRKDLKGIRQSGYSFDNEEKNVGMQCIAAPVFDMNGEVVAGLSISGPTSRMAMREIDDLGQAVIRSANELSNAIGGQVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MB51</accession>
    <name>A0A1M5MB51_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF2059 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0736</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74520.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0736"/>
    <dbReference type="EnsemblBacteria" id="SHG74520">
        <property type="protein sequence ID" value="SHG74520"/>
        <property type="gene ID" value="SAMN05444003_0736"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018637">
        <property type="entry name" value="DUF2059"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09832">
        <property type="entry name" value="DUF2059"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012793436" description="DUF2059 domain-containing protein" evidence="1">
        <location>
            <begin position="24"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="domain" description="DUF2059" evidence="2">
        <location>
            <begin position="79"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG74520.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="276" mass="30591" checksum="AB7CEA0717B254AE" modified="2017-03-15" version="1">MLKIAGAGTFALALATMPIAAVAQTNKAETLYETLLLPEVITLMREEGLTYGSDLADDFFPGRTIADWDGVVNVIYNADKMEGEIKDAFSAALEGDDVDSMLAFFQSELGQEIVQLEISARRALKDEQVEQLAEENAAIAMQDETDRFLQVEEFVDVNNVIESNVVGALNSNFAFYTGLLDGGAFGDDLTEEQILNDVWNQEPDIRQNTTEWAFSFLLLAYQPLNDSDLRQYIEFSKTDAGQELNGALFEAFDGMLERISRDLGLATSKYMGQQEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MBV5</accession>
    <name>A0A1M5MBV5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pimeloyl-ACP methyl ester carboxylesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0749</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74758.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899407.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0749"/>
    <dbReference type="EnsemblBacteria" id="SHG74758">
        <property type="protein sequence ID" value="SHG74758"/>
        <property type="gene ID" value="SAMN05444003_0749"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12697">
        <property type="entry name" value="Abhydrolase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00111">
        <property type="entry name" value="ABHYDROLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="25"/>
            <end position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG74758.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="262" mass="28271" checksum="6BD1A1A21D8B0F72" modified="2017-03-15" version="1">MMWTTQPRSEIAGYPAIVKGKGQPVLFLHGVGLRAEAWAAQLDGLANHAQVFAPDMLGHGENKRSRSSQTMSDYLDVTSAILGSLPFPAIVVGHSMGSMLALALAKQHPDLVETVVALNAIFDRSNAAAKAVQSRADELDGVTQVDPTVTLERWFEDKESPERDACRSWLETVDPSAYKSAYTAFAYSQIPNRELLTNVACPSIFMTGVQEPNSTPAMSTTMAEIVPRGRAIIVEGAAHMLPMTHPDQVNSVLLEILEGAAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MFU6</accession>
    <name>A0A1M5MFU6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, GntR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0806</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76052.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899480.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0806"/>
    <dbReference type="EnsemblBacteria" id="SHG76052">
        <property type="protein sequence ID" value="SHG76052"/>
        <property type="gene ID" value="SAMN05444003_0806"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011711">
        <property type="entry name" value="GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008920">
        <property type="entry name" value="TF_FadR/GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07729">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00035">
        <property type="entry name" value="HTHGNTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00895">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48008">
        <property type="entry name" value="SSF48008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="4">
        <location>
            <begin position="9"/>
            <end position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG76052.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="251" mass="27029" checksum="EC422A2BF0E711E7" modified="2017-03-15" version="1">MKIDPDSNADLSAQIAGAIRDAIISGDLRVDERLPSESELSDQFGVSRPTVREALKRLGAQSLIRTQRGATGGAFVNKLTYPDAYGQQITTSTLLLSMNAVSFQTACEARYALERACAPLSTKRRTADHLATMRAEAHRQAQPGLSDESFCASDVAFHRALVDAADNPVLSYQLAGAVEAMQPLMNMITFTARSRERIVALHTAIADAIEAQDAEATDRHLEELAAYTNELAQSVFDARAKQSASKSGVSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MPH4</accession>
    <name>A0A1M5MPH4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 11">Heme exporter protein D</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">SAMN05444003_0941</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 11">Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3 11">Cell inner membrane</location>
            <topology evidence="3 11">Single-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 11">Belongs to the CcmD/CycX/HelD family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79198.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899680.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG79198">
        <property type="protein sequence ID" value="SHG79198"/>
        <property type="gene ID" value="SAMN05444003_0941"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017004">
        <property type="term" value="P:cytochrome complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015886">
        <property type="term" value="P:heme transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007078">
        <property type="entry name" value="Haem_export_protD_CcmD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04995">
        <property type="entry name" value="CcmD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03141">
        <property type="entry name" value="cytochro_ccmD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="7 11" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="11" id="KW-0201">Cytochrome c-type biogenesis</keyword>
    <keyword evidence="10 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 11" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6 11" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002442"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004377"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00008741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00016461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU363101"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG79198.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="46" mass="5148" checksum="4F13270BB31E84F3" modified="2017-03-15" version="1">MPDLGKYATEVLLSYGVTILLVAGLVWVSWRQSVAAKRRLEALEDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MPL0</accession>
    <name>A0A1M5MPL0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">V8-like Glu-specific endopeptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0949</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79334.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0949"/>
    <dbReference type="EnsemblBacteria" id="SHG79334">
        <property type="protein sequence ID" value="SHG79334"/>
        <property type="gene ID" value="SAMN05444003_0949"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043504">
        <property type="entry name" value="Peptidase_S1_PA_chymotrypsin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001254">
        <property type="entry name" value="Trypsin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018114">
        <property type="entry name" value="TRYPSIN_HIS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00089">
        <property type="entry name" value="Trypsin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="SSF50494"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50240">
        <property type="entry name" value="TRYPSIN_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00134">
        <property type="entry name" value="TRYPSIN_HIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="13"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="38"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase S1" evidence="2">
        <location>
            <begin position="53"/>
            <end position="269"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG79334.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="269" mass="28762" checksum="C7A397815683CDD3" modified="2017-03-15" version="1">MEVAAHYERGLKIATLLTGFLLPTDVFRCIWCLMIKPSILAIALICLFVGPSVVSAQQVTRLTPTQQAPWAAVGQLVKGRIGTQSVCTATLVAPDVILTAAHCVNGAKNETPSGLRQYTFAAGWNKGEAFATRSISEIIVPRSYVPGGEDRLRNLNSDWALVRLSDPITNIEPVPIVPLPGPWETVYFLTYSNAEPDTPYLTSGCAHRTLEEGPLQIACPVSSGNSGAAVFVGQPDNPQIVAVIAAKAQNNAFAVVPGEELLSRIESLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MRF2</accession>
    <name>A0A1M5MRF2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0965</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79642.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899711.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0965"/>
    <dbReference type="EnsemblBacteria" id="SHG79642">
        <property type="protein sequence ID" value="SHG79642"/>
        <property type="gene ID" value="SAMN05444003_0965"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="62"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="202"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="226"/>
            <end position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG79642.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="281" mass="30521" checksum="E791F683EA550BC2" modified="2017-03-15" version="1">MSGNSVISAVDVFALPLWLLVLLVLILIPSAALLGYRTGRHTYGLQQDLPSDKKAQPSDTSIGAFLALLGLLLAFTYSFALSRFDDRKDALLLEANALGTAFVQAMLLEEPKQTDYREAILAYAETRSFGTAMNRDGTPLGDLLNVSLERQAALIDALETVLASDVEAAIRNSMTGSLTDILDAHTIRVEAQADSIPQALKYLLTMVAAFAVFMVGHDAGIRGKPLTWRVLAFSGLLIIVLVQIFDFERPASGIIRVPETIILITIEDMRSELAVEQSSLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MS03</accession>
    <name>A0A1M5MS03_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0982</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79985.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG79985">
        <property type="protein sequence ID" value="SHG79985"/>
        <property type="gene ID" value="SAMN05444003_0982"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG79985.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="184" mass="18658" checksum="9480BC78628A7ADB" modified="2017-03-15" version="1">MFGRSDLALVIAVVSMSACGGSSTSGDVDPIEAQPPEVVTGRFDVPQSGTARYSGFMNLNLPNGAIRETATGNLSLSVDFSASSDQVTGQARGFSIPSSGSLTGTIFVTAGNLEAEQGNTPPGFEAEISGALRGGSLINSLITGDMVAEFDTTDLSSASGVVFGDVTTTQGIDIFDGSFSVAKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MUK9</accession>
    <name>A0A1M5MUK9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF6434 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1027</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899767.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG80895">
        <property type="protein sequence ID" value="SHG80895"/>
        <property type="gene ID" value="SAMN05444003_1027"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045492">
        <property type="entry name" value="DUF6434"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20026">
        <property type="entry name" value="DUF6434"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF6434" evidence="1">
        <location>
            <begin position="71"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF20026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG80895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="198" mass="22597" checksum="8D90A83C2A4F39D1" modified="2017-03-15" version="1">MTDRPDISDCADAATFRQWYYLKEELVAFARDHGFQSTGGKFEIADRIAYYLDHGEAPPPAPKARKATSTFDWHSGDLSDATVITDSYKNTQNVRRYFKRHIDGFAFSIPLMDWMKANAGKTLADAVVEAKRIKDAKRKGVKQPDQPHNQYNAYTRAYFAAVADGTQEVVRALWAERRKRPGPYVFDLKDLDLVRAQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MXM8</accession>
    <name>A0A1M5MXM8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">2-octaprenyl-6-methoxyphenol hydroxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1082</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2">Cofactor biosynthesis; ubiquinone biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the UbiH/COQ6 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82031.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899814.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1082"/>
    <dbReference type="EnsemblBacteria" id="SHG82031">
        <property type="protein sequence ID" value="SHG82031"/>
        <property type="gene ID" value="SAMN05444003_1082"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00232"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006744">
        <property type="term" value="P:ubiquinone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002938">
        <property type="entry name" value="FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010971">
        <property type="entry name" value="UbiH/COQ6"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01494">
        <property type="entry name" value="FAD_binding_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01988">
        <property type="entry name" value="Ubi-OHases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD_binding_3" evidence="4">
        <location>
            <begin position="6"/>
            <end position="344"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005349"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG82031.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="397" mass="42543" checksum="F08CFE5326A1C1CB" modified="2017-03-15" version="1">MVETNCDILICGGGGAGLTAAAAFGTAGFSVVIVDPMPPVTSIKDAGADLRTTAFLLPAKEFLDKAGLWVKLEPFSTPLQTMAIVDAAKEPPVERAFEAKDISDNPFGWNLPNWLLRREMVARLEDLENVDFRTGVGFKSMVSRTSAALVRLTDGSKVTAKLVVGADGRDSAVRKAAGIAVSTTRYGQTALTFAVSHKAPHDNISTEVHKSGGPFTLVPLPDHEGGPCSAVVWMTNAADAKRLRDLNEDAFNQEATERSAGVLGPLTLVTRRTTWPIISQLASTLIAPRTVLVAEAAHVMPPIGAQGLNMSLKDLSFLLDLSQQHRNALGEAPMLDAYQRARHTDIKLRVNGIDMLNRASIAGNPVLQDMRRWGVQALHDIKPIRTGLMRMGLGANG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N214</accession>
    <name>A0A1M5N214_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 7">6,7-dimethyl-8-ribityllumazine synthase</fullName>
            <shortName evidence="7">DMRL synthase</shortName>
            <shortName evidence="7">LS</shortName>
            <shortName evidence="7">Lumazine synthase</shortName>
            <ecNumber evidence="4 7">2.5.1.78</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">ribH</name>
        <name evidence="8" type="ORF">SAMN05444003_1143</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>(2S)-2-hydroxy-3-oxobutyl phosphate + 5-amino-6-(D-ribitylamino)uracil = 6,7-dimethyl-8-(1-D-ribityl)lumazine + H(+) + 2 H2O + phosphate</text>
            <dbReference type="Rhea" id="RHEA:26152"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15934"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58201"/>
            <dbReference type="ChEBI" id="CHEBI:58830"/>
            <dbReference type="EC" id="2.5.1.78"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 7">Cofactor biosynthesis; riboflavin biosynthesis; riboflavin from 2-hydroxy-3-oxobutyl phosphate and 5-amino-6-(D-ribitylamino)uracil: step 1/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the DMRL synthase family.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.78" evidence="4 7"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83517.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899866.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1143"/>
    <dbReference type="EnsemblBacteria" id="SHG83517">
        <property type="protein sequence ID" value="SHG83517"/>
        <property type="gene ID" value="SAMN05444003_1143"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00275">
        <property type="reaction ID" value="UER00404"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009349">
        <property type="term" value="C:riboflavin synthase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000906">
        <property type="term" value="F:6,7-dimethyl-8-ribityllumazine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009231">
        <property type="term" value="P:riboflavin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd09209">
        <property type="entry name" value="Lumazine_synthase-I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.960">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00178">
        <property type="entry name" value="Lumazine_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034964">
        <property type="entry name" value="LS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002180">
        <property type="entry name" value="LS/RS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036467">
        <property type="entry name" value="LS/RS_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21058">
        <property type="entry name" value="PTHR21058"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00885">
        <property type="entry name" value="DMRL_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52121">
        <property type="entry name" value="SSF52121"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00114">
        <property type="entry name" value="lumazine-synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0686">Riboflavin biosynthesis</keyword>
    <keyword evidence="6 7" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="5-amino-6-(D-ribitylamino)uracil binding" evidence="7">
        <location>
            <begin position="58"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="region of interest" description="5-amino-6-(D-ribitylamino)uracil binding" evidence="7">
        <location>
            <begin position="82"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="region of interest" description="1-deoxy-L-glycero-tetrulose 4-phosphate binding" evidence="7">
        <location>
            <begin position="87"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="7">
        <location>
            <position position="90"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="27"/>
        </location>
        <ligand>
            <name>5-amino-6-(D-ribitylamino)uracil</name>
            <dbReference type="ChEBI" id="CHEBI:15934"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="114"/>
        </location>
        <ligand>
            <name>5-amino-6-(D-ribitylamino)uracil</name>
            <dbReference type="ChEBI" id="CHEBI:15934"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="128"/>
        </location>
        <ligand>
            <name>(2S)-2-hydroxy-3-oxobutyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58830"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007424"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022619"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00178"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG83517.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="177" mass="18695" checksum="E13BD6B3631DDF96" modified="2017-03-15" version="1">MAGPSHYIMARAEMDKPTKILIVVSPYYKDIADNMVAGAIAEIEASGATHEIVEVPGALEIPTAIGIAERMSNFDGYVALGCVIRGETTHYDTVCNDSSRAIQLLGLQGLCIGNGILTVENRTQAEVRADPADQNKGGSAAAAALHLVALSRKWGRPEKGVGFTSDILLAQDDTKTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N282</accession>
    <name>A0A1M5N282_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Polysaccharide export outer membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1148</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83631.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899871.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1148"/>
    <dbReference type="EnsemblBacteria" id="SHG83631">
        <property type="protein sequence ID" value="SHG83631"/>
        <property type="gene ID" value="SAMN05444003_1148"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015159">
        <property type="term" value="F:polysaccharide transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003715">
        <property type="entry name" value="Poly_export"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02563">
        <property type="entry name" value="Poly_export"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG83631.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="381" mass="39653" checksum="DD144C660816820E" modified="2017-03-15" version="1">MITLTLRFAKGAALIVTLGAVSACGLLPRSGPNKSEIFSGSVMEEGNAFVMVVDDRINGIAGVSPALGFSEAFKNAGVVGSDTIRAGDVLGLTIWENVEDGLLSAPGASATPLEEVQVDGSGFIFVPYAGRIKAAGNSPEAIRRIISEKLADQTPDPQVQVRRLAGDGATVSIVGGVSGQGIYPIERPTRTLATMLARAGGVASEPEIAKVTVVRGNHSGSIWFEDLYANPGNDIALRGGDIIFVEDSQRYFTALGATGSQNRVQFADQAISAIEAIAQVGGLSANAADPTGVFVLREEPASVANQLLNRDDLVGSQRVVYVLDLTQPNGLFIARDFMIRDQDTVYVTEAPFVQFNKGVSALTGTLGSAAGLTEAVNNAGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N4X0</accession>
    <name>A0A1M5N4X0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized conserved protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1174</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the YciI family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1174"/>
    <dbReference type="EnsemblBacteria" id="SHG84229">
        <property type="protein sequence ID" value="SHG84229"/>
        <property type="gene ID" value="SAMN05444003_1174"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005545">
        <property type="entry name" value="YCII"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03795">
        <property type="entry name" value="YCII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="YCII" evidence="2">
        <location>
            <begin position="1"/>
            <end position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007689"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG84229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="92" mass="10133" checksum="BA7292F8A7B33586" modified="2017-03-15" version="1">MKAYGDFTQKVRDEGKLVAGDALQGVETATTVSVRNGKTETIDGPFAETKEQLGGYYLLDCKDLDEAIEYAAMIPTADYGRIEVRPIVVWDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N5G2</accession>
    <name>A0A1M5N5G2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">(2R)-3-sulfolactate dehydrogenase (NADP+)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1197</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84751.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899912.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1197"/>
    <dbReference type="EnsemblBacteria" id="SHG84751">
        <property type="protein sequence ID" value="SHG84751"/>
        <property type="gene ID" value="SAMN05444003_1197"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1530.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1370.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043144">
        <property type="entry name" value="Mal/L-sulf/L-lact_DH-like_ah"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043143">
        <property type="entry name" value="Mal/L-sulf/L-lact_DH-like_NADP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036111">
        <property type="entry name" value="Mal/L-sulfo/L-lacto_DH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003767">
        <property type="entry name" value="Malate/L-lactate_DH-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11091">
        <property type="entry name" value="PTHR11091"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02615">
        <property type="entry name" value="Ldh_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89733">
        <property type="entry name" value="SSF89733"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG84751.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="324" mass="33100" checksum="679E4B494C6B2D44" modified="2017-03-15" version="1">MKVSVDEIFETSQAALLKHGAGPAQARAVAKAVARAEALGNIICGLYYVESYCTQLTSGRVNGTVEPVVSTPRAGSIMADARFGFAQPAFDAGLEAAIEACRTNGVATLSVAHAHTCTSLGYFTEQIGAAGLIGMGFTNASPVVAPPCGNKAVIGTNPFAMSVPGDGKLLMHFDFSTSAVALGKITMAKAAGESIPLGWAVDAEGQPTTDPEAALRGALVSAGGYKGWGFGLMVEILAAGMTGSVNSLDVSGLKVPDGPPHGLGQFYILIDPATHGDHFAERFARVAEAVAAQEGARIPGVNRVAMNEVDVPDALWDLVSGLAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N9P9</accession>
    <name>A0A1M5N9P9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Aldehyde dehydrogenase (NAD+)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_1269</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86316.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899974.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1269"/>
    <dbReference type="EnsemblBacteria" id="SHG86316">
        <property type="protein sequence ID" value="SHG86316"/>
        <property type="gene ID" value="SAMN05444003_1269"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016160">
        <property type="entry name" value="Ald_DH_CS_CYS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00070">
        <property type="entry name" value="ALDEHYDE_DEHYDR_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="5">
        <location>
            <begin position="16"/>
            <end position="478"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="252"/>
        </location>
    </feature>
    <feature type="active site" evidence="3">
        <location>
            <position position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG86316.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="483" mass="51725" checksum="267BDB40756BD5C8" modified="2017-03-15" version="1">MTRFNDYYKNYIDGAWVDGGAGRIEVTNPGTGAVLTEHALANASDVDRAVQAAKRVHESGVLTTLRPVERGRMVKAMGQYILDNDQMYAEMLSEEQGKPLWEALIEIRGAARYFEYYGNQAETVEGKSIPLGDGYIDYTVYEPYGVTAHIIPWNYPVEMAARSVSAALTTGNTIVVKSAEMTPVTSMIWGHAAEAAGLPKGAVNVLCGYGHEAGAALAGHPDVRQVVFTGSVATGTRVAEAAAKNVVPCVLELGGKSAAIVHDDADLDAFERDIRWGIFFNAGQVCSAMSRVIVHESRKNELVDRAVAIAQSLSVGPGIDRPEFGANMGSMVSEQQRDRALGLIAGAVDQGATVATGGHALNIPGAFLEPTIISDVTPHMTIAQEEVFGPVMSVLSFKDEEEAHQISNSTEFGLVGGVFTKDLGRATRATRAIRAGQIFVNEWYAGGVETPFGGFGKSGYGREKGREALWNYVQTKNVAIKMS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NAT5</accession>
    <name>A0A1M5NAT5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Acetoin utilization protein AcuC</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_1289</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Ketone degradation; acetoin degradation.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the histone deacetylase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86664.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899992.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1289"/>
    <dbReference type="EnsemblBacteria" id="SHG86664">
        <property type="protein sequence ID" value="SHG86664"/>
        <property type="gene ID" value="SAMN05444003_1289"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00040"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045150">
        <property type="term" value="P:acetoin catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd09994">
        <property type="entry name" value="HDAC_AcuC_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.800.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003085">
        <property type="entry name" value="AcuC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000286">
        <property type="entry name" value="His_deacetylse"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023801">
        <property type="entry name" value="His_deacetylse_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037138">
        <property type="entry name" value="His_deacetylse_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023696">
        <property type="entry name" value="Ureohydrolase_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00850">
        <property type="entry name" value="Hist_deacetyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01270">
        <property type="entry name" value="HDASUPER"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52768">
        <property type="entry name" value="SSF52768"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0006">Acetoin catabolism</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hist_deacetyl" evidence="5">
        <location>
            <begin position="21"/>
            <end position="303"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005101"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00020218"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022627"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG86664.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="375" mass="41600" checksum="26CC7208F12C254B" modified="2017-03-15" version="1">MTKPLFIGSEIYRNSSYGDWHPLRVPRVSTVMDLSRALGWLPVDQYITSPTAKPAALTSFHTAEYVSALSKAEKDQEVPAEVKERHHLGIPSNPIFPEMYRRPATSVGAALLAGELLRDGGVVHAPGCGTHHGMPDRANGFCYLNDPVFAIQSLFRNGCRRVAYVDIDAHHPDGVEYAFEGDPNVLMISIHEENRWPRTGALEDRGAGNVWNLPVPRGLNDDEMLLILNKLLLPLVQNFQPDAIVLQCGADAVEEDPQSKLSLSNRSHYAVVRELMPLSDRLLVTGGGGYNPWSVGRLWTGVWGVLNGIDPPSDLIDEAQAGLRDIKWTGQRRFKEPLPHWITSLIDPPNNGPIRDEVRGSIGQLVRRRRATQQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NDG9</accession>
    <name>A0A1M5NDG9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Tight adherence protein C</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_1328</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87239.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900024.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1328"/>
    <dbReference type="EnsemblBacteria" id="SHG87239">
        <property type="protein sequence ID" value="SHG87239"/>
        <property type="gene ID" value="SAMN05444003_1328"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018076">
        <property type="entry name" value="T2SS_GspF_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00482">
        <property type="entry name" value="T2SSF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="18"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="113"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="147"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="298"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="domain" description="T2SSF" evidence="7">
        <location>
            <begin position="185"/>
            <end position="313"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00482"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG87239.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="327" mass="36121" checksum="ECA022798A36024E" modified="2017-03-15" version="1">MIDQINELITQNLGPQGGLMIVGLLGVLLILITLPILLQKQEDPLEKLKKQQRAQVSEDGQAAKLRAGSNKKSKLEKYSTFLEPQDAEEFSAVKLKLLQAGYRSKNAVQYYHFSQFALGIVGLIIGGILVILKTNQAGDEGLTTQAMAMWGVGPGAAGYMFPKYWVTRRVDTRKEAIEQGFPDSLDMMLVCVEAGQSLDQSIIRVARELQAGFPDLAWEYELVAHEMKAGKAKEQVLRDMSERCGVQDITSFVTVLIQSQQFGTSIADALRVYASEMRDKRVMRAEEKANKLPTKMTLATMMLTVPPLLVILIGPSIYNISQNLGGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NDK1</accession>
    <name>A0A1M5NDK1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized conserved protein YjiS, DUF1127 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1352</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87654.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900043.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1352"/>
    <dbReference type="EnsemblBacteria" id="SHG87654">
        <property type="protein sequence ID" value="SHG87654"/>
        <property type="gene ID" value="SAMN05444003_1352"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009506">
        <property type="entry name" value="DUF1127"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06568">
        <property type="entry name" value="DUF1127"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG87654.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="68" mass="7464" checksum="436AC89080F7F4C3" modified="2017-03-15" version="1">MAAFDTNRTVNVMSAGRVTRAVADAFGSVIAWNDARVTRNALNKLSARELEDIGLVRGDIDNIANRRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NER3</accession>
    <name>A0A1M5NER3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">2-polyprenyl-6-methoxyphenol hydroxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1372</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88020.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900064.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1372"/>
    <dbReference type="EnsemblBacteria" id="SHG88020">
        <property type="protein sequence ID" value="SHG88020"/>
        <property type="gene ID" value="SAMN05444003_1372"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002938">
        <property type="entry name" value="FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01494">
        <property type="entry name" value="FAD_binding_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD_binding_3" evidence="1">
        <location>
            <begin position="5"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="domain" description="FAD_binding_3" evidence="1">
        <location>
            <begin position="275"/>
            <end position="311"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG88020.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="389" mass="41652" checksum="F8D8C1C166A48D1F" modified="2017-03-15" version="1">MNYSIGIAGAGIGGLTAAALLAKQGHQVAVFDQFDTPKPVGSGLVIQPVGQDVLSQIGALDAALATGRPITRMAGHEVDSGRSVLDVTYNLNHPAFFGLAIHRGALFQAILDAAKHAGARLKPDAKVLEAKHQLIETDKDQHGPFDLIIDATGAGSPLSPLLSKPLPYGALWATVDWPYETGLPDNELRQAYRKASRMIGAMPIGKPELNGPEKATIFWSLPCNGLKSWQSAGLQRWKDEAIALWPEIAPFVDQIQTPADMTFAQYSHGTLRRPYGAGIVHIGDAAHRASPQLGQGANMAMLDALAIAKAIQSAPLSDVGQLYAKARRLHVGIYQAMSAAFTPQYQSNSNALPILRDRILFPLSRIHPIPRILSTLVCGTMVKPIGKLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NH83</accession>
    <name>A0A1M5NH83_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Glyoxylate reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_1418</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88891.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900104.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1418"/>
    <dbReference type="EnsemblBacteria" id="SHG88891">
        <property type="protein sequence ID" value="SHG88891"/>
        <property type="gene ID" value="SAMN05444003_1418"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016616">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006139">
        <property type="entry name" value="D-isomer_2_OHA_DH_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029753">
        <property type="entry name" value="D-isomer_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029752">
        <property type="entry name" value="D-isomer_DH_CS1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006140">
        <property type="entry name" value="D-isomer_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00389">
        <property type="entry name" value="2-Hacid_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02826">
        <property type="entry name" value="2-Hacid_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00065">
        <property type="entry name" value="D_2_HYDROXYACID_DH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00671">
        <property type="entry name" value="D_2_HYDROXYACID_DH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2-Hacid_dh" evidence="4">
        <location>
            <begin position="8"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="domain" description="2-Hacid_dh_C" evidence="5">
        <location>
            <begin position="113"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005854"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003719"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00389"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG88891.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="328" mass="36131" checksum="8F93EC04E3A7CBE5" modified="2017-03-15" version="1">MPSRKLSVVVTRRLPSEVEMRMSELFDVTLREDDTPMTTDELAEAMANADVLVPTITDQLNAALLARAGDRLKLIANYGAGVDNIDVATARQRGIHVSNTPDVMTDDTADMTMGLILGVTRRLAEGFRIAQSDDWGGWAPTAMLGGRIKGRRLGILGMGRIGQAVARRASAFGMQVHYHNRRRLRPEVEEDLEATYWESLDQMVARIDVLSINCPHTPSTFHLMNARRLRLLKPTAVIVNTSRGEVIDENALTRMIRAGEIAGAGLDVFERGNEINPRLKALPNVILLPHMGSATVEGRIEMGEKVLINIKTFADGHRPPDLVVPSML</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NKK9</accession>
    <name>A0A1M5NKK9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Succinate dehydrogenase hydrophobic membrane anchor subunit</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">SAMN05444003_1468</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Membrane-anchoring subunit of succinate dehydrogenase (SDH).</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="4">Carbohydrate metabolism; tricarboxylic acid cycle.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Part of an enzyme complex containing four subunits: a flavoprotein, an iron-sulfur protein, plus two membrane-anchoring proteins, SdhC and SdhD.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900150.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1468"/>
    <dbReference type="EnsemblBacteria" id="SHG89975">
        <property type="protein sequence ID" value="SHG89975"/>
        <property type="gene ID" value="SAMN05444003_1468"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00223"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000104">
        <property type="term" value="F:succinate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1300.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034804">
        <property type="entry name" value="SQR/QFR_C/D"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014312">
        <property type="entry name" value="Succ_DH_anchor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000701">
        <property type="entry name" value="SuccDH_FuR_B_TM-su"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01127">
        <property type="entry name" value="Sdh_cyt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81343">
        <property type="entry name" value="SSF81343"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02968">
        <property type="entry name" value="succ_dehyd_anc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="11" id="KW-0249">Electron transport</keyword>
    <keyword evidence="8" id="KW-0349">Heme</keyword>
    <keyword evidence="13" id="KW-0408">Iron</keyword>
    <keyword evidence="14 15" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 15" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="12 15" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="31"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="58"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="99"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011558"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00019425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="SHG89975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="123" mass="13251" checksum="1FA8C83C05684C12" modified="2017-03-15" version="1">MAFLTDRKRASGMGSAKTGTEHHWQMMVTSVALLILVPLFMFTFGSVLGGTYEEVVAYYSRPVPAVIAILTLLVGFFHFAKGAQTLIEDYVHGLARKGLIIGVICLSYGAAALGVFAIIRLAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NLL7</accession>
    <name>A0A1M5NLL7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1482</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90335.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900161.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG90335">
        <property type="protein sequence ID" value="SHG90335"/>
        <property type="gene ID" value="SAMN05444003_1482"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG90335.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="114" mass="12479" checksum="C82D84D28A2D7302" modified="2017-03-15" version="1">MPGDAGQPAMNSPKSKDSDEGTPDGTVYWLSKHLGWQPTLGSEMPSLCVVSAIAKDSDHEHCAGCWEKFGSGTKFEGKIFATNKDSEVAKHFVCENCWDLMKKVKNGERKVTSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NM53</accession>
    <name>A0A1M5NM53_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Low temperature requirement protein LtrA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1492</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90547.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900169.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG90547">
        <property type="protein sequence ID" value="SHG90547"/>
        <property type="gene ID" value="SAMN05444003_1492"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010640">
        <property type="entry name" value="Low_temperature_requirement_A"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36840">
        <property type="entry name" value="PTHR36840"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06772">
        <property type="entry name" value="LtrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="53"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="85"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="113"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="148"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="240"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="275"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="310"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="349"/>
            <end position="366"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG90547.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="396" mass="44728" checksum="AFC4A23B276BE0D1" modified="2017-03-15" version="1">MALHDHPMWRKPQHHHELDHTHEHVHWTELFYDLIHVVTIFQLGNYLSHHLDVQGFLVFAGVFVALWYAWGELSLFNSIYVSTDVWHRVIMSVMICTLMFMAAAIPAIEGGGWMFFALGFAANRAMLAALYLRARRVNASSHSMCSEQARNFAIFAVLFAITAFLPKPFAFWAFAAVMVATQLPYMIPEVSVLRFDRFIPRAGHMAERFALLTLIVLGEGFFKLVVTLSEKGIYKVSPDVLVNFVIGGVSMFVMCWIYFDFVGNGKPKDNRPSTLITWWLSHLSLMLCGVMVGVALAAEVKVGFWAPYPTKYAAIGCFGLAGYIAMLWALQHVIEHRVASEFGRGDVRLFGIALAITTFFIVPHVPAIVGNLLWGTALFSQIIIPVTRAWLRFRHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NMY2</accession>
    <name>A0A1M5NMY2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 11">Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex</fullName>
            <ecNumber evidence="6 11">2.3.1.61</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">2-oxoglutarate dehydrogenase complex component E2</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">SAMN05444003_1481</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 11">E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2-oxoglutarate to succinyl-CoA and CO(2).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>(R)-N(6)-dihydrolipoyl-L-lysyl-[2-oxoglutarate dehydrogenase complex component E2] + succinyl-CoA = (R)-N(6)-(S(8)-succinyldihydrolipoyl)-L-lysyl-[2-oxoglutarate dehydrogenase complex component E2] + CoA</text>
            <dbReference type="Rhea" id="RHEA:15213"/>
            <dbReference type="Rhea" id="RHEA-COMP:10581"/>
            <dbReference type="Rhea" id="RHEA-COMP:10582"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57292"/>
            <dbReference type="ChEBI" id="CHEBI:83100"/>
            <dbReference type="ChEBI" id="CHEBI:83120"/>
            <dbReference type="EC" id="2.3.1.61"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>(R)-lipoate</name>
            <dbReference type="ChEBI" id="CHEBI:83088"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="4 11">Amino-acid degradation; L-lysine degradation via saccharopine pathway; glutaryl-CoA from L-lysine: step 6/6.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 11">Belongs to the 2-oxoacid dehydrogenase family.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.61" evidence="6 11"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90303.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900160.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1481"/>
    <dbReference type="EnsemblBacteria" id="SHG90303">
        <property type="protein sequence ID" value="SHG90303"/>
        <property type="gene ID" value="SAMN05444003_1481"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00868">
        <property type="reaction ID" value="UER00840"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045252">
        <property type="term" value="C:oxoglutarate dehydrogenase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004149">
        <property type="term" value="F:dihydrolipoyllysine-residue succinyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033512">
        <property type="term" value="P:L-lysine catabolic process to acetyl-CoA via saccharopine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.559.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003016">
        <property type="entry name" value="2-oxoA_DH_lipoyl-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001078">
        <property type="entry name" value="2-oxoacid_DH_actylTfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000089">
        <property type="entry name" value="Biotin_lipoyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023213">
        <property type="entry name" value="CAT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036625">
        <property type="entry name" value="E3-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004167">
        <property type="entry name" value="PSBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011053">
        <property type="entry name" value="Single_hybrid_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006255">
        <property type="entry name" value="SucB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00198">
        <property type="entry name" value="2-oxoacid_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00364">
        <property type="entry name" value="Biotin_lipoyl"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02817">
        <property type="entry name" value="E3_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47005">
        <property type="entry name" value="SSF47005"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51230">
        <property type="entry name" value="SSF51230"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01347">
        <property type="entry name" value="sucB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50968">
        <property type="entry name" value="BIOTINYL_LIPOYL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00189">
        <property type="entry name" value="LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51826">
        <property type="entry name" value="PSBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="10 11" id="KW-0450">Lipoyl</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 11" id="KW-0808">Transferase</keyword>
    <keyword evidence="8 11" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="domain" description="Lipoyl-binding" evidence="13">
        <location>
            <begin position="2"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="domain" description="Lipoyl-binding" evidence="13">
        <location>
            <begin position="105"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="domain" description="Peripheral subunit-binding (PSBD)" evidence="14">
        <location>
            <begin position="207"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="80"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="249"/>
            <end position="271"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001267"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001938"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00007317"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012945"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00019511"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU361138"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS51826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="SHG90303.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="501" mass="51473" checksum="035EB907361C0307" modified="2017-03-15" version="1">MSTEVRVPTLGESVTEATVATWFKKPGDSVAVDEMLCELETDKVTVEVPSPAAGTLSEIVAAEGDTVGVDALLAQISDGAAAPEPKAETPAQAPAPAAASGGGENIDVMVPTLGESVTEATVSSWFKAAGDAVAQDEILCELETDKVSVEVPAPAAGVLSEIVAAEGTTVDASAKLAVIAAGAAAAAAPAPAAAAPAATASAPAGMKDGPAAEKALAEAGMTRDQVAGTGRDGRVTKSDVAAAVAAGGSAPAPAATAPAPRAPVAADQAAREERVKMTRLRQTIAKRLKDSQNTAAMLTTYNEVDMTEVMALRNEYKDLFLKKHGVKLGFMSFFTKACCHALNEVPEVNAEIDGTDIVYKSYVNMGIAAGTPTGLVVPVINDADAMSFAAIEKAIAEKGAKARDGKLSMEEMQGGTFTISNGGVYGSLMSSPILNPPQSGILGMHKIQDRPMAINGEVVIRPMMYLALSYDHRIVDGKGAVTFLVRVKEALEDPRRLLMDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PLD0</accession>
    <name>A0A1M5PLD0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LysR substrate binding domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1710</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02552.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900526.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH02552">
        <property type="protein sequence ID" value="SHH02552"/>
        <property type="gene ID" value="SAMN05444003_1710"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LysR_substrate" evidence="1">
        <location>
            <begin position="4"/>
            <end position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03466"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH02552.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="161" mass="18039" checksum="F353C5EA63F5E047" modified="2017-03-15" version="1">MSDLTRRDADIAIRHVRPQQPDLIAKRLDDLDIGFFASRDYLSSLGRMKAPEDFGVAQFIGYGSAERLVPQLKAMGIPATKDNFVAVSDNGPVMFELIRQGGGIGPLSVKLAKRNPELVRILPDVAIAKLETWLVTHRELHTSRRIRYTFDHLAAELFRNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PLK2</accession>
    <name>A0A1M5PLK2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Threonine dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1716</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02664.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900531.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1716"/>
    <dbReference type="EnsemblBacteria" id="SHH02664">
        <property type="protein sequence ID" value="SHH02664"/>
        <property type="gene ID" value="SAMN05444003_1716"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006520">
        <property type="term" value="P:cellular amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="PLP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000634">
        <property type="entry name" value="Ser/Thr_deHydtase_PyrdxlP-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="Trypto_synt_PLP_dependent"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="SSF53686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00165">
        <property type="entry name" value="DEHYDRATASE_SER_THR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PALP" evidence="3">
        <location>
            <begin position="14"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH02664.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="320" mass="33555" checksum="D29E38B1D175D102" modified="2017-03-15" version="1">MNIDMIRAAAKRLEGHARRTPLLSSPFLDEIAGRKLLVKAECLQHTGSFKFRGGWSAVSNLSDNELKTGVIAFSSGNHAQGVALAAREHGAPAVIVMPSNAPEVKIENTRALGAEVVLYDRENESREEIGEALSRKRGLTLIRPFDEPQVIAGQGTCGLEIVADAGVTEADVLVCCGGGGLTGGIALALAAEAPGMTVRPCEPEGFDDVTRSLLSGQREKNDSESGSICDAILTPSPGEITFPILKEHCGPGIVVTEDECLRAMGLAFERLRIVVEPGGAAALAGALFHGNELGHDTVIAVATGGNVDKEVFQRALETLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-09-29" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PLU0</accession>
    <name>A0A1M5PLU0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">MFS transporter, DHA1 family, tetracycline resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1719</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02722.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900533.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH02722">
        <property type="protein sequence ID" value="SHH02722"/>
        <property type="gene ID" value="SAMN05444003_1719"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001958">
        <property type="entry name" value="Tet-R_TetA/multi-R_MdtG"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01035">
        <property type="entry name" value="TCRTETA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="7"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="43"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="77"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="102"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="135"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="163"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="218"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="251"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="282"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="306"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="339"/>
            <end position="365"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="377"/>
            <end position="400"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="6"/>
            <end position="400"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH02722.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="406" mass="42839" checksum="ACB99D966AB450A9" modified="2017-03-15" version="1">MDNRLPITFILISVVLDSMGIGLIMPVMPDLIQEVEGAGIADAAVWGGILATIFAAMQFIFGPTLGSLSDRFGRRPVLLISLAVMAFDYILMAIAGSITFLIVARIIGGITAATQSTAAAYMADISEPDQKAANFGLIGAAFGVGFVLGPLMGGVLAEYGTRAPFYAAAALAAANFLFGYFVLPETVTDKIRRPFKWRRANPMGAFKHINKLPGLGRLMLITFIYTIAFFVYPGVWAYFGAAQFGWGPGMIGLSLGVFGVGIAIVQGVLMRPILRVLGERNAVIVGLSIDVVAFVALGFIQNGWVALALTPLTALGSIAGPALQGIMSRRADDNQQGELQGALASINAVATIAAPLVVTQTFWYFTKDDAAIYLPGAPFLLSAVLVIGCIFIFVTSPILAEAKSDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PMA0</accession>
    <name>A0A1M5PMA0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="9">ETC complex I subunit conserved region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_1728</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02884.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900540.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1728"/>
    <dbReference type="EnsemblBacteria" id="SHH02884">
        <property type="protein sequence ID" value="SHH02884"/>
        <property type="gene ID" value="SAMN05444003_1728"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070469">
        <property type="term" value="C:respirasome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022900">
        <property type="term" value="P:electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006885">
        <property type="entry name" value="NADH_UbQ_FeS_4_mit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038532">
        <property type="entry name" value="NDUFS4-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12219">
        <property type="entry name" value="PTHR12219"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04800">
        <property type="entry name" value="ETC_C1_NDUFA4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0249">Electron transport</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="4" id="KW-0999">Mitochondrion inner membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0679">Respiratory chain</keyword>
    <keyword evidence="5" id="KW-0809">Transit peptide</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022660"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022792"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH02884.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="103" mass="11409" checksum="0675BB6E21813FA2" modified="2017-03-15" version="1">MRARIYKPAKTAMSSGTAKTKHWVLEFAKDSSREIDPLMGWTSSSDTQSQVKLTFETKEAAIEYAADNGIDATVTEPKPRKANIRAGGYGENFATNRRGAWTH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PMK9</accession>
    <name>A0A1M5PMK9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Taurine-pyruvate aminotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1733</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900543.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1733"/>
    <dbReference type="EnsemblBacteria" id="SHH02984">
        <property type="protein sequence ID" value="SHH02984"/>
        <property type="gene ID" value="SAMN05444003_1733"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00610">
        <property type="entry name" value="OAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005814">
        <property type="entry name" value="Aminotrans_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00202">
        <property type="entry name" value="Aminotran_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000521">
        <property type="entry name" value="Transaminase_4ab_Lys_Orn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00600">
        <property type="entry name" value="AA_TRANSFER_CLASS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="1 2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="3" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH02984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="461" mass="50526" checksum="D68CEA6E92C0305A" modified="2017-03-15" version="1">MDLNQLTNDPEAIVEADRAHVWHHLIQHKPFEKDIDPRIIVEGKGMKVWDIKGKEHLDAVSGGVWTVNVGYGRERIGKAISDAVTKMCFFGGTAGTIPGATFSEMLIDKMPGLDRVYYANSGSEANEKAFKMVRQISHKYYGGKKSKILYRERDYHGSTLATMSAGGQDERNAQYGPFAPGFIRVPHCLEYRAQNDYAGDSYGVKAAEAIEEVILREGPDTIGALCLEPITAGGGIIVPPKGYWEKVQEICKKYEILLHIDEVVCGIGRTGTWFGYQQFGVKPDIVTMAKGVASGYAAISCCVTTNEVFDKFKDASDHLGYFRDISTFGGCTGGPAAAIENMNIIIEEDLLDNSKAMGLHLNEKLHELMDKHNWIGDVRGMGLFAGIELVQDRGTKEPVDEKKVMGIVADCMNQGVIIGATNRSLPGYNNTLLFAPPLIATKDDLNHVVDAVDQAMTRVLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PP63</accession>
    <name>A0A1M5PP63_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">SAMN05444003_1758</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="12">Cell inner membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 12">Belongs to the cytochrome ubiquinol oxidase subunit 1 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03524.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900564.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1758"/>
    <dbReference type="EnsemblBacteria" id="SHH03524">
        <property type="protein sequence ID" value="SHH03524"/>
        <property type="gene ID" value="SAMN05444003_1758"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070069">
        <property type="term" value="C:cytochrome complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019646">
        <property type="term" value="P:aerobic electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002585">
        <property type="entry name" value="Cyt-d_ubiquinol_oxidase_su_1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30365">
        <property type="entry name" value="PTHR30365"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01654">
        <property type="entry name" value="Cyt_bd_oxida_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006446">
        <property type="entry name" value="Cyt_quinol_oxidase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 12" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 12" id="KW-0249">Electron transport</keyword>
    <keyword evidence="5 12" id="KW-0349">Heme</keyword>
    <keyword evidence="10 12" id="KW-0408">Iron</keyword>
    <keyword evidence="11 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 12" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 12" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="54"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="95"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="128"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="182"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="216"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="324"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="360"/>
            <end position="381"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="414"/>
            <end position="437"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRNR" id="PIRNR006446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHH03524.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="458" mass="50611" checksum="DBF688B6C3BCF02A" modified="2017-03-15" version="1">MLDTLLLSRIQFAANISFHILFPTITIALGWVLLFFKLRYNRTGEQRWMDAYGFWVKIFALSFAMGVVSGITMSFQFGTNWPGFMEKVGNVAGPLLAYEVLTAFFLEAVFLGIMLFGASRVPSWVHTLATFLVAFGTTMSAFWIIVLNSWMHTPQGFEMIDGVAHATDWWAIVFNPSMPYRFFHMLIASFLTVSFLIAGVSAFRWLIGGRTEGVRAALKTAVFGAAVLIPIQIFVGDQHGLNTLEYQPQKVAAMEANWNTDTHVPLILFAIPDDEARENRFEIAIPNLASIILTHHADGEVPGLNDFVTDDGEIMHPRVAPVFWSFRVMVGTGVAMLLLSWTASVMMLRKRHGVEGLPKVMLWALVGMTFSGWLATLAGWYTTEIGRQPWLVQGVLTTKEAVADVPAPMVLSTLLTYLAVYVILLGAYISVIFYLAVKASRGENLGGGIAAPSPVPAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PUL5</accession>
    <name>A0A1M5PUL5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cell division transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1850</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05340.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1850"/>
    <dbReference type="EnsemblBacteria" id="SHH05340">
        <property type="protein sequence ID" value="SHH05340"/>
        <property type="gene ID" value="SAMN05444003_1850"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004513">
        <property type="entry name" value="ABC_transpt_FtsX"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47755">
        <property type="entry name" value="PTHR47755"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="2" id="KW-0132">Cell division</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="31"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="176"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="229"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="271"/>
            <end position="293"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH05340.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="301" mass="31943" checksum="0ABBB66A2AE53ACE" modified="2017-03-15" version="1">MKRLISEATGMVIGDPEAERSVPPTGFTARLTVFTAAAMAFLSVFALALSLATDRLADQWASELAQTSTIRISAPAEQAEAQVAAALRVLETTPGVASARALTDAEQRELLAPWFGPDLPVDRLPIPRLIEVVETSDGFDTTGLRARLQAEVPGAILDDHTRWREPLVDAASRLRLLGWIAIALIIGATGTMITLAAQSALAANAQVIRVMRLVGAEDGYIARAFVRRFTLRALAGALIGAILAGVAILTLPSADTTGGFLTGLGFRGIEWLWLLAIPVLIGVVAFFATRAAALRVLREQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q0G2</accession>
    <name>A0A1M5Q0G2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">3-oxoacyl-[acyl-carrier-protein] reductase /acetoacetyl-CoA reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1959</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07420.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900899.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1959"/>
    <dbReference type="EnsemblBacteria" id="SHH07420">
        <property type="protein sequence ID" value="SHH07420"/>
        <property type="gene ID" value="SAMN05444003_1959"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018454">
        <property type="term" value="F:acetoacetyl-CoA reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042619">
        <property type="term" value="P:poly-hydroxybutyrate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011283">
        <property type="entry name" value="Acetoacetyl-CoA_reductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01829">
        <property type="entry name" value="AcAcCoA_reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH07420.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="241" mass="25409" checksum="739870994265B5A8" modified="2017-03-15" version="1">MSRVALVTGGSRGIGAAISTALKEAGYTVAATYAGNDEKAAAFTAETGIKTYKWDVGNYEACAEGIAQVEADLGPVEILVNNAGITRDAPFHKMTPQQWKEVMDTNLSGVFNMTHPLWPGMRERKFGRVINISSINGQKGQFAQANYAAAKAGDIGFTKALAQEGARAGITVNVIAPGYINTEMMSTIPEKVMNEVILPQIPVGRLGEASEIARAVVFLASDEAGFVTGSTMSVNGGQYLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q0X9</accession>
    <name>A0A1M5Q0X9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">UPF0178 protein SAMN05444003_1945</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1945</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the UPF0178 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07133.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900721.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1945"/>
    <dbReference type="EnsemblBacteria" id="SHH07133">
        <property type="protein sequence ID" value="SHH07133"/>
        <property type="gene ID" value="SAMN05444003_1945"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00489">
        <property type="entry name" value="UPF0178"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003791">
        <property type="entry name" value="UPF0178"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35146">
        <property type="entry name" value="PTHR35146"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02639">
        <property type="entry name" value="DUF188"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008522"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00489"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH07133.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="148" mass="15982" checksum="ECDC745AFB1128FC" modified="2017-03-15" version="1">MIYVDADACPVKAEVERVGTRHKVKIFIVSNGGIRPSQNPFVETVVVPDGPDIADMWIADRATKGDVVVTGDIPLAAKCIEAGALVIKHNGEALTERNIGNVLATRDLMADMRAADPFRQGGGRPFSKADRSRFLDGLEKALRQAKTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q2V5</accession>
    <name>A0A1M5Q2V5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Formate dehydrogenase</fullName>
            <ecNumber evidence="6">1.17.1.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">SAMN05444003_2012</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>formate + NAD(+) = CO2 + NADH</text>
            <dbReference type="Rhea" id="RHEA:15985"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.17.1.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mo-bis(molybdopterin guanine dinucleotide)</name>
            <dbReference type="ChEBI" id="CHEBI:60539"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">In the C-terminal section; belongs to the prokaryotic molybdopterin-containing oxidoreductase family.</text>
    </comment>
    <dbReference type="EC" id="1.17.1.9" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08414.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900772.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2012"/>
    <dbReference type="EnsemblBacteria" id="SHH08414">
        <property type="protein sequence ID" value="SHH08414"/>
        <property type="gene ID" value="SAMN05444003_2012"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009326">
        <property type="term" value="C:formate dehydrogenase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008863">
        <property type="term" value="F:formate dehydrogenase (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043546">
        <property type="term" value="F:molybdopterin cofactor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015942">
        <property type="term" value="P:formate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd02790">
        <property type="entry name" value="MopB_CT_Formate-Dh_H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd02753">
        <property type="entry name" value="MopB_Formate-Dh-H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009010">
        <property type="entry name" value="Asp_de-COase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041925">
        <property type="entry name" value="CT_Formate-Dh_H"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041924">
        <property type="entry name" value="Formate_Dh-H_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006478">
        <property type="entry name" value="Formate_DH_asu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006657">
        <property type="entry name" value="MoPterin_dinucl-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006656">
        <property type="entry name" value="Mopterin_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006963">
        <property type="entry name" value="Mopterin_OxRdtase_4Fe-4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006655">
        <property type="entry name" value="Mopterin_OxRdtase_prok_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027467">
        <property type="entry name" value="MopterinOxRdtase_cofactor_BS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12838">
        <property type="entry name" value="Fer4_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04879">
        <property type="entry name" value="Molybdop_Fe4S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00384">
        <property type="entry name" value="Molybdopterin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01568">
        <property type="entry name" value="Molydop_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00926">
        <property type="entry name" value="Molybdop_Fe4S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50692">
        <property type="entry name" value="SSF50692"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01591">
        <property type="entry name" value="Fdh-alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51669">
        <property type="entry name" value="4FE4S_MOW_BIS_MGD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00551">
        <property type="entry name" value="MOLYBDOPTERIN_PROK_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00490">
        <property type="entry name" value="MOLYBDOPTERIN_PROK_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="13" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="10 13" id="KW-0408">Iron</keyword>
    <keyword evidence="11 13" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="8 13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-0520">NAD</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="14">
        <location>
            <begin position="3"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="15">
        <location>
            <begin position="142"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="15">
        <location>
            <begin position="181"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S Mo/W bis-MGD-type" evidence="16">
        <location>
            <begin position="227"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="234"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="237"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="241"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="268"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000455"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00010312"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00013128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS51669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="SHH08414.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="920" mass="101069" checksum="2A0B9F8227492218" modified="2017-03-15" version="1">MSEKITFTLDGQQVTAEPGETIWEVANGRGLVIPHLCHKPQPGYRSDGNCRACMVAIEGERTLAASCIREPSEGMVVTTDQPREVQARRMVMELLVADQPEQEVARDKSSHLWDMAAKQDVSDSRFPAMEQDHIPLLDDSHVAMSVNLDACIQCGLCVRACREVQVNDVIGMSGRGHNAYPTFDFDDPMGASTCVACGECVQACPTGALMPSSLMDGDQVGDRSDYDSEVKSVCAFCGVGCQISIKVKDNKVKYVEGINGPANEGRLCVKGRFGYDYIHHQHRLTKPLIRREDAPAKGLNVNPDNWQEFFREASWDEALDFAANGLKGRGREVAGFGSAKCTNEEAYLFQKFIRQGFGHNNVDHCTRLCHASSVAALIENVGSGAVTATFNEIENADVAIVIGANPLENHPVAATYFKQFTKRGGKLIVMDPRNQSLRRFATHMLQFKPGADVSMLNGIMNVIVEEGLYDEQYIAAFTEDWDAQKEHLKRFPPEKMEELCGIDADIIRAVARDFATAKAGMIFWGMGVSQHIHGTDNSRCLISLALMCGHVGRPGTGLHPLRGQNNVQGASDAGLIPMFLPDYQTVTDDGVRSAFTDVWNSGDFSNERGLTVTEIMDAVHEDKIKAMYILGENPAMSDPDVEHARDALAKLDHLVVQDIFITETANYADVILPASALYEKSGTVSNTNRTVQMLRPAVTPPGEAQEDWWIEVELAKRCGLPWDYKHPSEVFAEMAINMRSLDNITWERLEGGAVTYPSLSPEDPGQSVVFGDAFPRSEGRAKFTPAEVVSPDDMPTPEFPMVLTTGRQLEHWHTGSMTRRSKVLDAVEPEANCSLHPSTLRKLGVEPGGHVTLTTKRGSITIMAREDRAVSPDMVFVPFAYVEAAANILTNPAIDPYGKIPEFKYSAVRVEKASASYAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q4Y4</accession>
    <name>A0A1M5Q4Y4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Trehalose utilization protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2052</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09184.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900809.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH09184">
        <property type="protein sequence ID" value="SHH09184"/>
        <property type="gene ID" value="SAMN05444003_2052"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029010">
        <property type="entry name" value="ThuA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009381">
        <property type="entry name" value="Trehalose_catabolism_ThuA_prok"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06283">
        <property type="entry name" value="ThuA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF030013">
        <property type="entry name" value="ThuA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ThuA" evidence="1">
        <location>
            <begin position="9"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF06283"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH09184.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="261" mass="29361" checksum="1CE91F6C745F4511" modified="2017-03-15" version="1">MAIRTIVWGENVHEQTNKIVSDLYPNGMHGCIADALNADDRFSATTATLQEDEHGLPDTRLAETDVLLWWGHAAHGDVSDEVVERVADHVNAGMGLILLHSAHFAKIFKRLMGTPCNLTWREAGERERLWVTSRNHPIAAGLPDHFELENEEMYGEPFGVPEPLETVFISWFQGGEVFRSGLTYKRGAGNVFYFRPGHETYPTYYDQNVQTVLRNAVAWAYNPAPRVVGVNDAPNVPVEQALEPIEERGPRLHKDGEEGYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q7W9</accession>
    <name>A0A1M5Q7W9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2109</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH10274.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH10274">
        <property type="protein sequence ID" value="SHH10274"/>
        <property type="gene ID" value="SAMN05444003_2109"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH10274.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="87" mass="10060" checksum="274046D741B22227" modified="2017-03-15" version="1">MLALVDAYKSFTKKPDTVPFWEKLLLRVAAFILLELFGQGIRKLTVDGRYDLRKFGFRKAQGLNSYPVEDGSQIFQSKLFMIEIKNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QH98</accession>
    <name>A0A1M5QH98_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2123</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH13525.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH13525">
        <property type="protein sequence ID" value="SHH13525"/>
        <property type="gene ID" value="SAMN05444003_2123"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH13525.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="35" mass="4047" checksum="12FC3FE2C77ADF12" modified="2017-03-15" version="1">MNVGLGRGQTILKQRERIKRKTIETRRLLHSKSAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QQ72</accession>
    <name>A0A1M5QQ72_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DNA helicase</fullName>
            <ecNumber evidence="2">3.6.4.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">SAMN05444003_2241</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.12"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="3.6.4.12" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15929.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901108.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2241"/>
    <dbReference type="EnsemblBacteria" id="SHH15929">
        <property type="protein sequence ID" value="SHH15929"/>
        <property type="gene ID" value="SAMN05444003_2241"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014151">
        <property type="entry name" value="DNA_helicase_AddA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014017">
        <property type="entry name" value="DNA_helicase_UvrD-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000212">
        <property type="entry name" value="DNA_helicase_UvrD/REP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011604">
        <property type="entry name" value="PDDEXK-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038726">
        <property type="entry name" value="PDDEXK_AddAB-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014016">
        <property type="entry name" value="UvrD-like_ATP-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11070">
        <property type="entry name" value="PTHR11070"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12705">
        <property type="entry name" value="PDDEXK_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00580">
        <property type="entry name" value="UvrD-helicase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13361">
        <property type="entry name" value="UvrD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02784">
        <property type="entry name" value="addA_alphas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51198">
        <property type="entry name" value="UVRD_HELICASE_ATP_BIND"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51217">
        <property type="entry name" value="UVRD_HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0227">DNA damage</keyword>
    <keyword evidence="8" id="KW-0234">DNA repair</keyword>
    <keyword evidence="6" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="9 13" id="KW-0347">Helicase</keyword>
    <keyword evidence="9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="4 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UvrD-like helicase ATP-binding" evidence="11">
        <location>
            <begin position="3"/>
            <end position="477"/>
        </location>
    </feature>
    <feature type="domain" description="UvrD-like helicase C-terminal" evidence="12">
        <location>
            <begin position="494"/>
            <end position="781"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="909"/>
            <end position="951"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="909"/>
            <end position="933"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="24"/>
            <end position="31"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001665"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51217"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHH15929.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="1121" mass="124960" checksum="10DDA058815CD5DC" modified="2017-03-15" version="1">MIRDAASQNQVDAADPHRNTWLSANAGSGKTRVLTDRVARLLLDGVSPQNILCLTYTKAAASEMQNRLFQRLGAWSMLSDADLRKDLQRLGADDKSGQISLSEARCLFARAIETPGGLKIQTIHSFCSSVLRRFPLEAGVSPQFVELDETAAELLQEECLDDIAEGPNKDILRRVLDRFPSVELLKLTAAISKESRYFLAPFDEAGLRRDLSVRPDFKVSDLIEAVFEPGWKKTLSDLITVLRTSGKNDQKDAAKLDPICSQSPDLSTLRDLEDVFLYGDKAKAPFAARVDRFPTKPIQKAHPDLVETVHEFMESVADAREQRLSFLAFERAQTLHQFGSLFVQIYEAKKLERGVLDFDDLIEKTLFLLKDSKVAQWVLYRLDGGIDHLLVDEAQDTSPIQWSVIEALTQEFSSGASARENQKRTVFVVGDKKQSIYSFQGADPKEFDRMRAHFDQALNEAQTPLQTPELRHSFRSSSAILNIVDHVFQGDRGDAIGGTAAHFAFNDDLPGRVDIWPLIEKSDDAEYGQDWFEPIDTLQESHHDVRLAEQIADEIGKTIAQEILPVKNRDTGEIGYRKITEGDFLILVQRRSDLFNEIIRACKSKGLKVAGADRLQLNAELAVKDICAILSFLALPEDSLSLANALKSPLFDWSEQDLYALAYHRTEDHLWQALRNSTEHPKTLGVLNDLRSKSDFLRPYEIIERLLTRHDGRRKLLRRLGVEAADGIDALLTQAINYESKGTPSLTGFLCWLESEMTEIKRQSDSQSDEIRVMTVHGAKGLEAPIVILPDTADRQNRLQDAIVKFDGQIHWKPASDETPSALQDGLSAIKDAQENERMRLLYVAMTRAENWLIVCGAGQSNIDKGSWYAIVDAALDHADRFEIVRNGEVIKRVEFGDWHTTPTLQNKVANTSSAPLPTLQSIEPSMPTKTLSPSDLGGAKALAGEPHSEEDGLARGRAIHHLLENMTRVPADERSKFATKILANHPDGPVLNQSDIDQTIALLDDQKLSWIFAPNAIKEVPISTNLPTLNGARMHGIIDRLVIEDETITAVDFKSNSTTPTSASETPEGILRQMGAYAEALSQIYPDKQIKTAILWTETAEIFDLSNDLVSSALARVNTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QTC1</accession>
    <name>A0A1M5QTC1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Glycine dehydrogenase (decarboxylating)</fullName>
            <ecNumber evidence="7">1.4.4.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Glycine cleavage system P-protein</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Glycine decarboxylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Glycine dehydrogenase (aminomethyl-transferring)</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">gcvP</name>
        <name evidence="9" type="ORF">SAMN05444003_2302</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 7">The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6 7">
            <text>(R)-N(6)-lipoyl-L-lysyl-[glycine-cleavage complex H protein] + glycine + H(+) = (R)-N(6)-(S(8)-aminomethyldihydrolipoyl)-L-lysyl-[glycine-cleavage complex H protein] + CO2</text>
            <dbReference type="Rhea" id="RHEA:24304"/>
            <dbReference type="Rhea" id="RHEA-COMP:10494"/>
            <dbReference type="Rhea" id="RHEA-COMP:10495"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:83099"/>
            <dbReference type="ChEBI" id="CHEBI:83143"/>
            <dbReference type="EC" id="1.4.4.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 7 8">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="4 7">The glycine cleavage system is composed of four proteins: P, T, L and H.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the GcvP family.</text>
    </comment>
    <dbReference type="EC" id="1.4.4.2" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17151.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901199.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2302"/>
    <dbReference type="EnsemblBacteria" id="SHH17151">
        <property type="protein sequence ID" value="SHH17151"/>
        <property type="gene ID" value="SAMN05444003_2302"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004375">
        <property type="term" value="F:glycine dehydrogenase (decarboxylating) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019464">
        <property type="term" value="P:glycine decarboxylation via glycine cleavage system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00613">
        <property type="entry name" value="GDC-P"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00711">
        <property type="entry name" value="GcvP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003437">
        <property type="entry name" value="GcvP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020581">
        <property type="entry name" value="GDC_P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11773">
        <property type="entry name" value="PTHR11773"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02347">
        <property type="entry name" value="GDC-P"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00461">
        <property type="entry name" value="gcvP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7 8" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="7 8">
        <location>
            <position position="699"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003788"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010756"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00033655"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00711"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR603437-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH17151.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="947" mass="103636" checksum="7B95BB4BDDA6D59D" modified="2017-03-15" version="1">MTFKPTEYLPYDFANRRHIGPSPEEMEEMLKVVGAESLDALIDDTLPPAIRQKEPLDFGKAKSERELLHHMRVTASKNKVLTSLIGQGYHGTVTPPAIQRNILENPAWYTAYTPYQPEISQGRLEALLNFQTMVCDLTGLEIANASLLDEATACAEAMTMAQRVSKSKVKAFFVDENCHPQNISVMKTRAAPLGIEVIVGSPDDLDASAVFGAIFQYPGTYGQLRDFTDEISKLHEHKGIGIISADPLSLTLLKEPGAMGADIAVGSTQRFGVPIGYGGPHAAYMATKSNYGRNMPGRIVGVSIDAHGNRAYRLSLQTREQHIRREKATSNVCTAQALLAVMAGFYAVFHGPKGLQAIAQRIHRKTARLAEGLSQAGFEVRPKAFFDTITVEVGPLQKAVMKSAVDEGINLRAVGETKIGITLDERTRPATLEAVWRAFGIEREDKDYTPHYSMPEKLIRKSEYLTHEIFHMNRSETEMMRYMRRLADRDLALDRAMIPLGSCTMKLNSAAEMMPVSWREFSLLHPYAPEDQALGYKEMIDDLSSKLCDITGYDAISMQPNSGAQGEYAGLLTIASYHRANGQGHRNVCLIPMSAHGTNPASAQMVGWKVVPIKSAENGDIDLEDFRAKTELHSENLAGCMITYPSTHGVFEETVTEVTKITHDHGGQVYIDGANMNAMVGLSRPGDLGGDVSHLNLHKTFCIPHGGGGPGMGPIGVKEHLVAHLPGDPNGGEGAVSAAAFGSPSLLPISWAYCLMMGGEGLTQATRVAILNANYIAKRLEGAYDIMFTGPKGRIAHECILDTRPFADSAHVTVDDIAKRLIDSGFHAPTMSWPVAGTLMVEPTESESKAELDRFCDAMLSIRAEIAEIEDGKIDGENNALKNAPHTVEDLVGDWDRPYTREQGCFPAGAFRVDKYWPPVNRVDNVYGDRNLVCTCPPMEEYLEAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QW89</accession>
    <name>A0A1M5QW89_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Exosortase D, VPLPA-CTERM-specific</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_2347</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18146.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901277.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2347"/>
    <dbReference type="EnsemblBacteria" id="SHH18146">
        <property type="protein sequence ID" value="SHH18146"/>
        <property type="gene ID" value="SAMN05444003_2347"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013426">
        <property type="entry name" value="EpsH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026392">
        <property type="entry name" value="Exo/Archaeosortase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019127">
        <property type="entry name" value="Exosortase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026491">
        <property type="entry name" value="ExosortD_VPLPA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014263">
        <property type="entry name" value="Methanolan_biosynth_EpsI"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11984">
        <property type="entry name" value="DUF3485"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09721">
        <property type="entry name" value="Exosortase_EpsH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02602">
        <property type="entry name" value="8TM_EpsH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02914">
        <property type="entry name" value="EpsI_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04178">
        <property type="entry name" value="exo_archaeo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04152">
        <property type="entry name" value="exosort_VPLPA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0645">Protease</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="22"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="84"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="108"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="133"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="159"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="199"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="226"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="267"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="321"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="domain" description="DUF3485" evidence="10">
        <location>
            <begin position="324"/>
            <end position="530"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF11984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH18146.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="535" mass="59744" checksum="0F8DFFBB5022312E" modified="2017-03-15" version="1">MAVTNEGAVEGRFPTAFLTKGMLCLVLATLFAGFFFSNGLQALLNAWQLPEYSHGPLIPVLSLLLFLKQLKDYPIDPGPKRDRWVGVCVVLLAVIVGYLGNLARINDIVAYATIIWIGGMLLISFGWETGRHFWPGVLHLVYMLPLPGVVYYKMTTSLQFVSSEVGVWFLQLMSIPVFLDGNIIDLGVMKLHVAEACSGLRYLFPILSFSYIFAALYKGSNWHKAILLLSAAPIAILMNSIRIAVAGYIVNYYGIEWVNGFSHFFEGWVIFAICIALLFLLAWVLVRFNSEHDGLVDALDLNTDGLGVQLGRLQYVRASKAMITAAVLMATAAVSLNFVPDRGTYKVDRQSFVTFPQTFGTWEQFGPRERLAENVARTLGADDYHQVTLVNSEQVMPSVGLFMAWYEDQSRGGVHSPEICLPGAGWEIAWLERTDVADQMGFDESFQLNRAVIQKGETRMMVYYWFEQKGRRIAWDFAAKFYLMTDGIATGRTDGGLVRLTTLIQPDETDAAAEARLQNVLKDVVEPLNDFMPEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QWC5</accession>
    <name>A0A1M5QWC5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Polymer biosynthesis protein, WecB/TagA/CpsF family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2362</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18454.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2362"/>
    <dbReference type="EnsemblBacteria" id="SHH18454">
        <property type="protein sequence ID" value="SHH18454"/>
        <property type="gene ID" value="SAMN05444003_2362"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06533">
        <property type="entry name" value="Glyco_transf_WecG_TagA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004629">
        <property type="entry name" value="WecG_TagA_CpsF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34136">
        <property type="entry name" value="PTHR34136"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03808">
        <property type="entry name" value="Glyco_tran_WecG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00696">
        <property type="entry name" value="wecG_tagA_cpsF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH18454.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="260" mass="27911" checksum="60C2707A4FD793BE" modified="2017-03-15" version="1">MMNWAKVTSASQGQSVAVNVPSRVRFLEELRSMIANGKGFTVATLNLDHVVKLRSNASFRSAYAKHSHITADGNPIVWLSRLSGVDVELIPGSELIEPVAKIAAEQGATVALFGSTIEALEPAAEALQSRFPGLEIAAVLSPPMGFDPSSADALGAIEDLKSSGARIVFLALGAPKQEEFAIHAASQMPSTGFFSIGAGLDFISGAQTRAPRWVRRLALEWLWRLLSSPIRLGRRYFACIVILPRLFVEALRSRKGSAAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QXS8</accession>
    <name>A0A1M5QXS8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2375</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18688.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901318.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2375"/>
    <dbReference type="EnsemblBacteria" id="SHH18688">
        <property type="protein sequence ID" value="SHH18688"/>
        <property type="gene ID" value="SAMN05444003_2375"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001034">
        <property type="entry name" value="DeoR_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013196">
        <property type="entry name" value="HTH_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026881">
        <property type="entry name" value="WYL_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08279">
        <property type="entry name" value="HTH_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13280">
        <property type="entry name" value="WYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51000">
        <property type="entry name" value="HTH_DEOR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH deoR-type" evidence="3">
        <location>
            <begin position="3"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51000"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH18688.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="237" mass="26488" checksum="FFEF3C0B84803884" modified="2017-03-15" version="1">MNSRTRQDAIIRNLRRSGATTIETLRKEVGTSRSTILRDLSALRDEGYMIIAEQGRGGGVYLDPSSVQTTAKLSVPEVFALIIGISSMRAVGSLPFAGLADSGLTKIEKSLPPDKLRDLRRLLDCLYVGPLAPQVDVSDVGEIDIGLLTAFERAFLERWSLKFDYVDAKGARSQRCVEPQAMLILLPLWYLVAWDPSRDDVRHFRVDRISQPDVIEGPTFRLRRIVFDAGVQPIRYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QYV3</accession>
    <name>A0A1M5QYV3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Magnesium chelatase</fullName>
            <ecNumber evidence="3">6.6.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_2396</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O + Mg(2+) + protoporphyrin IX = ADP + 3 H(+) + Mg-protoporphyrin IX + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13961"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57306"/>
            <dbReference type="ChEBI" id="CHEBI:60492"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.6.1.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="9">Porphyrin-containing compound metabolism.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the Mg-chelatase subunit H family.</text>
    </comment>
    <dbReference type="EC" id="6.6.1.1" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19078.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901351.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2396"/>
    <dbReference type="EnsemblBacteria" id="SHH19078">
        <property type="protein sequence ID" value="SHH19078"/>
        <property type="gene ID" value="SAMN05444003_2396"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00557">
        <property type="reaction ID" value="UER00612"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016851">
        <property type="term" value="F:magnesium chelatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015995">
        <property type="term" value="P:chlorophyll biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015979">
        <property type="term" value="P:photosynthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd10150">
        <property type="entry name" value="CobN_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003672">
        <property type="entry name" value="CobN/Mg_chltase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022571">
        <property type="entry name" value="Mg_chelatase_H_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44119">
        <property type="entry name" value="PTHR44119"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02514">
        <property type="entry name" value="CobN-Mg_chel"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11965">
        <property type="entry name" value="DUF3479"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0149">Chlorophyll biosynthesis</keyword>
    <keyword evidence="5" id="KW-0436">Ligase</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-0602">Photosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF3479" evidence="10">
        <location>
            <begin position="7"/>
            <end position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001499"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010851"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023444"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF11965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH19078.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="1176" mass="127275" checksum="94150631662A37B4" modified="2017-03-15" version="1">MTYPPYRVVIVTLDQHAAGPAARVADSLAQDFPGLTVSVHAAAEWGKNPQALAATKEAVATGDIIIANMLFLEEHVQAIHADLLARRDDCDALVGMIADTDIVKLTKLGDLDMSKPSSGVMSLLKKLRGKSKPGAGSGAKQLKTLRRLPKILKLIPGKAQDVRAWFLSMQYWLGGSDDNVEGMIRYLVGRYAQRDGWGDIAAPLPIDYPEVGLYHPDLPDHHITTELAELPSPAAPVATVGLLMLRSYILASDAAHYDAVIRSFEAANIRVIPAFAGGLDGTPAIETYLAGNIDAMVSLTGFSLIGGPAYNDSDAAVALLQKLNVPYIAAQPLEFQTLDQWAQSGQGLGPVETTMLVALPEIDGATNPTVFAGRHGESGCSGCAENCAAAGTLKTMAPCPERIAALTARAKKLAVLRRKENAKKTVGIVLYGFPPNAGAVGTAAYLSVFESLHNTLTQMKRDGYDLDVPETVDDLRALVLDGNAKQYGQEANVAAHVVAEDIVRNTPWLSDIEEVWGPAPGRIQSDGQGVFILGAQLGKVFIGVQPTFGYEGDPMRLLFEKGFAPTHAFAQFYLWIRNTLQADAVLHFGMHGALEFMPGKQSGPSESCWPDRLIGDLPNIYLYAANNPSEASLAKRRSNAITVTHMTPPLAQAGLYKGLSELKESLVRWRAMEPNDPARDDLSALIRDQANAVDLNARDIEKLWLTVLETEGSLIPDGLHIFGKPLTDAAKFDLLNLMPAEARKIAEPLLGDDHELPALMRALSGEFIAPVPGGDIIRSPEILPTGRNIHAFDPFRMPTAFAVSEGSKQADLLLETHETLPRTVAMVLWGSDNIKSDGTPISQALALMGAKPRFDNYGRLAGADLIPLEKLGRPRIDVVMTLSGIFRDLLPLQTKMLAEAALKCAELDEPLDQNYIRAHALAYAEEMGCDLETAALRVFSNAEGAYGSNVNQLIDSSAFGDEDELADAYEARKSFAYGVNGKAEQNAELLQKALKDVDLAYQNLESVELGVTTVDHYFDTLGGIARAVKRAKGGEEAPVYIGDQTRGGAKVRTLQDQVALETRSRSLNPKFYEGLLKHGHEGVRQIEAQITNTMGWSATTGEVEPWVYQRLSETFVLDESMRERLAALNPQASMRMANRLLEASDRDYWAPDAETLEALQDAADTLEDRVEGVAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QZ56</accession>
    <name>A0A1M5QZ56_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">PH domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2401</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19188.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901358.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2401"/>
    <dbReference type="EnsemblBacteria" id="SHH19188">
        <property type="protein sequence ID" value="SHH19188"/>
        <property type="gene ID" value="SAMN05444003_2401"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005182">
        <property type="entry name" value="DUF304"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03703">
        <property type="entry name" value="bPH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="40"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="70"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="107"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="domain" description="bPH_2" evidence="3">
        <location>
            <begin position="96"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="191"/>
            <end position="212"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH19188.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="212" mass="23583" checksum="F636F3604F1F2220" modified="2017-03-15" version="1">MSHDDFNFEPIRGLPEQLPEGEYILWQGAPDFRRLAREALGVRWVMAYFAILIVWRVGVSSTENPLSVSISHAVPFIVAATITCALVYLLAYVQARSTVYTLTNKRVAMRIGAALTMTLNLPYTWIGTAQLDLKKSGHGTLVMELIGETRLSYLMTWPHVKPWSMARTKPALRCIPEAEKVAQIFADAAETRVSEPQISRKPTGPSGQVPAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QZJ5</accession>
    <name>A0A1M5QZJ5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Threonine/homoserine efflux transporter RhtA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2418</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19512.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901382.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH19512">
        <property type="protein sequence ID" value="SHH19512"/>
        <property type="gene ID" value="SAMN05444003_2418"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="33"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="65"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="92"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="121"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="147"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="176"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="209"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="243"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="265"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="5"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="148"/>
            <end position="282"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH19512.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="290" mass="30423" checksum="F3C0DDCF92398B33" modified="2017-03-15" version="1">MDIRAIFMGLAFALMWSSAFTSARIIVAYAPPMASLSLRFLISGLIGVGLAYALGQTARLDRNQWIAVIVFGVCQNALYLGLNFVAMQTVEASLASIIASSLPLLVGLIGWLVFGDRLRPLGIVGLIVGFAGVGLIMGARFQGGGNGFGIVLCVIGALSLAIATLAVRGASSGGNILMIVGLQMLVGSVVLVVPSLMFETFEVTWSWQLIAAFIYTTLVPGLIATVTWFYLVGRVGAVKASTFHFLNPFFGVAIAAVLLGEQLSMSDFVGVAIIMAAILAVNLSKDPTVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R0I4</accession>
    <name>A0A1M5R0I4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2440</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19957.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH19957">
        <property type="protein sequence ID" value="SHH19957"/>
        <property type="gene ID" value="SAMN05444003_2440"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH19957.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="80" mass="8660" checksum="7BA98A0602C7DA0F" modified="2017-03-15" version="1">MSVSPIAIHAINLESAGRFKTWPLGSPNLTLSAKNLLKVQKAFGAAVVQFLEEGHIALGQGVTLKKPKMRMFRAAAMRTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R115</accession>
    <name>A0A1M5R115_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Molecular chaperone Hsp31 and glyoxalase 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2435</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19858.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2435"/>
    <dbReference type="EnsemblBacteria" id="SHH19858">
        <property type="protein sequence ID" value="SHH19858"/>
        <property type="gene ID" value="SAMN05444003_2435"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002818">
        <property type="entry name" value="DJ-1/PfpI"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01965">
        <property type="entry name" value="DJ-1_PfpI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DJ-1_PfpI" evidence="1">
        <location>
            <begin position="78"/>
            <end position="276"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH19858.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="289" mass="31155" checksum="BF6773068D2CC97B" modified="2017-03-15" version="1">MGILRKLFRAESQPTADGAFSPSPLAIKLGTSSTTDYDGGAYTERYKGTRNRVLMVCTEERNMTMANGKKFSTGNHPVEMGLPMLHLMNAGFEIDVVTPTGAPVVIEDWAMPADDADIQKLYRDFADAFQNPGSLADFAANSLVDDTLYAAVFIPGGHGAMLGLPDNADLGKVLHWAHNTGLHTLALCHGPAALLAARNDAGFLYDGYKITVFPDAVDKQTPMIGYLPGPMPWWVCEKLNALGVETINKKADNSTHVDRRLVTGASPQAANTFGRLAAETLLKRTETNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R1Z3</accession>
    <name>A0A1M5R1Z3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2462</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH20425.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901445.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH20425">
        <property type="protein sequence ID" value="SHH20425"/>
        <property type="gene ID" value="SAMN05444003_2462"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="91"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="118"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="35"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH20425.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="150" mass="16227" checksum="A19A836AF38AEF09" modified="2017-03-15" version="1">MDQRLNRQVAAKYGLITPVRREPNKKFSNTIALDSRALSRPDTSSGKENTRPLLGQAQGGTEHDYNKSIESLEIDLSRIDLTDEETSKPPIFLACLALGGFFGLVAVAYAYSMGMQMLSLIAVYSAVGCAISLASAVVINLLSSEELNND</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RBX5</accession>
    <name>A0A1M5RBX5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Anti-ECFsigma factor, ChrR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2476</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23313.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901548.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH23313">
        <property type="protein sequence ID" value="SHH23313"/>
        <property type="gene ID" value="SAMN05444003_2476"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025979">
        <property type="entry name" value="ChrR-like_cupin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12973">
        <property type="entry name" value="Cupin_7"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cupin_7" evidence="1">
        <location>
            <begin position="19"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="domain" description="Cupin_7" evidence="1">
        <location>
            <begin position="129"/>
            <end position="215"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12973"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH23313.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="220" mass="24568" checksum="7B30CCD7DF87FC31" modified="2017-03-15" version="1">MRLRDNFAERVVVTPDDYEWVASPANGVDRMMLDRIGDEVARATTIVRFAPNSQFDTHEHGGGEEFLVLEGVFSDEHNDYPAGTYVRNPIGTAHTPHIGPEGATILVKLHQFDEDDTAHFHINTREAEFRPGVALGLSVLPLHSHTSENVALVRWAPGTKFSAHQHWGGEEIFVIEGTFQDEHGDYPAGSWIRSPHMSKHDPWSDEGCLIYVKTGHLPQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RCZ3</accession>
    <name>A0A1M5RCZ3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">30S ribosomal protein S15</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rpsO</name>
        <name evidence="7" type="ORF">SAMN05444003_2513</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.</text>
    </comment>
    <comment type="function">
        <text evidence="3 6">One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Part of the 30S ribosomal subunit. Forms a bridge to the 50S subunit in the 70S ribosome, contacting the 23S rRNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 4">Belongs to the universal ribosomal protein uS15 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24068.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901884.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2513"/>
    <dbReference type="EnsemblBacteria" id="SHH24068">
        <property type="protein sequence ID" value="SHH24068"/>
        <property type="gene ID" value="SAMN05444003_2513"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00353">
        <property type="entry name" value="Ribosomal_S15p_S13e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01343_B">
        <property type="entry name" value="Ribosomal_S15_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000589">
        <property type="entry name" value="Ribosomal_S15"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005290">
        <property type="entry name" value="Ribosomal_S15_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009068">
        <property type="entry name" value="S15_NS1_RNA-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23321">
        <property type="entry name" value="PTHR23321"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00312">
        <property type="entry name" value="Ribosomal_S15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01387">
        <property type="entry name" value="Ribosomal_S15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47060">
        <property type="entry name" value="SSF47060"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00952">
        <property type="entry name" value="S15_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00362">
        <property type="entry name" value="RIBOSOMAL_S15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="1 3 4" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 6" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01343"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003920"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004524"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH24068.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="89" mass="10268" checksum="D6E09ABB63D33D4F" modified="2017-03-15" version="1">MSITADEKARIMKEFATKEGDTGSPEVQVAILSSRIATLTEHFKTHKKDNHGRRGLLKMVAQRRKLLDYTKAKDEARYQDLIKRLGLRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RD26</accession>
    <name>A0A1M5RD26_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2494</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23693.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901576.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2494"/>
    <dbReference type="EnsemblBacteria" id="SHH23693">
        <property type="protein sequence ID" value="SHH23693"/>
        <property type="gene ID" value="SAMN05444003_2494"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021959">
        <property type="entry name" value="DUF3576"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12100">
        <property type="entry name" value="DUF3576"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5011979705" evidence="1">
        <location>
            <begin position="28"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH23693.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="143" mass="14855" checksum="6E52674171CB9183" modified="2017-03-15" version="1">MTFAPRKITVAAAAVALLALPSCSLFGSSSTESATQQASRVSGAETVAVNRYLWAAALDVLNFLPVQSVDPFTGVISTGYGTPPGGSRAYRATVYITDPALDARALNVALQTRSGPVAAETQRAVEDAILSRARQLRSGDGQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RDJ9</accession>
    <name>A0A1M5RDJ9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Beta-barrel assembly machine subunit BamF</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2528</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24374.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901629.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2528"/>
    <dbReference type="EnsemblBacteria" id="SHH24374">
        <property type="protein sequence ID" value="SHH24374"/>
        <property type="gene ID" value="SAMN05444003_2528"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021395">
        <property type="entry name" value="DUF3035"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11233">
        <property type="entry name" value="DUF3035"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH24374.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="166" mass="17376" checksum="C7B5BE09008B86F3" modified="2017-03-15" version="1">MRVVFCALTAVALMGCAGERGLRDLRSSTGGPDEFSVVPSAPLEIPETLALPTPTPGGSNRTDINPNANAVVALGGSPARAFAGGIPASDSALVARASRYGTQADIRPVLAAEDEAFRQRGRILNVFNVLGRDRYYQTYASQALNAYGELDRFRAAGVATPSAPPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RF17</accession>
    <name>A0A1M5RF17_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Rhodanese-related sulfurtransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2556</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24947.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901670.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2556"/>
    <dbReference type="EnsemblBacteria" id="SHH24947">
        <property type="protein sequence ID" value="SHH24947"/>
        <property type="gene ID" value="SAMN05444003_2556"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.250.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001763">
        <property type="entry name" value="Rhodanese-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036873">
        <property type="entry name" value="Rhodanese-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00581">
        <property type="entry name" value="Rhodanese"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00450">
        <property type="entry name" value="RHOD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52821">
        <property type="entry name" value="SSF52821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50206">
        <property type="entry name" value="RHODANESE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Rhodanese" evidence="1">
        <location>
            <begin position="28"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH24947.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="124" mass="12955" checksum="EF1B71CF770EC186" modified="2017-03-15" version="1">MKSSKDYLAEANAVVPRMSAEDAIDKHAEGNGVFVDVRDSSAVAQTGKIQGALHIPRGMLEFVADPETALYNDALQKEAEIYLICAAGGQAALAGKTLIDMGYENVTNIGGISAWKDAGGPTEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RF20</accession>
    <name>A0A1M5RF20_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">UPF0246 protein SAMN05444003_2544</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2544</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0246 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24720.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901652.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2544"/>
    <dbReference type="EnsemblBacteria" id="SHH24720">
        <property type="protein sequence ID" value="SHH24720"/>
        <property type="gene ID" value="SAMN05444003_2544"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00652">
        <property type="entry name" value="UPF0246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005583">
        <property type="entry name" value="YaaA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30283">
        <property type="entry name" value="PTHR30283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03883">
        <property type="entry name" value="H2O2_YaaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00652"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH24720.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="256" mass="28612" checksum="7A7049F6600035E6" modified="2017-03-15" version="1">MLIVISPAKSLDWSPVEVDTTAPAYQDDAVRLSKTMRNQTLGQLKSLMSISDDLARLNRDRFKSFAEEPAADVTKAAAFAFNGDTYQGLEAKTLDEAALDWAQSRLRILSGLYGLLRPLDAIQPYRLEMGSRLKTRRGNSLYDYWGDQLAKDLNAQAAALETDLLLNCASQEYFGAADTKALKLRVITPKFLEVKDDKPRIVSFFAKRARGAMARFAVENRVTEAEQLKEFATGGYQFDADLSDGDTWAFVRDYPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RFN0</accession>
    <name>A0A1M5RFN0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF1801 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2562</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901677.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH25081">
        <property type="protein sequence ID" value="SHH25081"/>
        <property type="gene ID" value="SAMN05444003_2562"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014922">
        <property type="entry name" value="DUF1801"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08818">
        <property type="entry name" value="DUF1801"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1801" evidence="1">
        <location>
            <begin position="17"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08818"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH25081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="127" mass="14054" checksum="6B96DEDEFA3B46C1" modified="2017-03-15" version="1">MSAEVCAAFEAMPPQARDAALQLRELIFDVADDTPEIGPIEEVLRWGQPSYITPKKKAASTLRLGVPKNGTFAIFAHCQSSVISDYVALFPDQDRIEGNRAVLFDTKDQIDPNRHGLLIKSALTYHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RG87</accession>
    <name>A0A1M5RG87_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Beta-mannosidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2576</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyl hydrolase 2 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25367.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901698.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2576"/>
    <dbReference type="EnsemblBacteria" id="SHH25367">
        <property type="protein sequence ID" value="SHH25367"/>
        <property type="gene ID" value="SAMN05444003_2576"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036156">
        <property type="entry name" value="Beta-gal/glucu_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041625">
        <property type="entry name" value="Beta-mannosidase_Ig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006102">
        <property type="entry name" value="Glyco_hydro_2_Ig-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00703">
        <property type="entry name" value="Glyco_hydro_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17753">
        <property type="entry name" value="Ig_mannosidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49303">
        <property type="entry name" value="SSF49303"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="SSF49785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_hydro_2" evidence="4">
        <location>
            <begin position="194"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="domain" description="Ig_mannosidase" evidence="5">
        <location>
            <begin position="717"/>
            <end position="791"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007401"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF17753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH25367.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="797" mass="89397" checksum="4843D8117103FC89" modified="2017-03-15" version="1">MTQLDLAGVWHLSDIGTDYSCPITFPGDGITALHAAGKIPDPYWGRNEYDVRWICERDWIATREFELTSNDVSLTLSRVDTVATIELNGVVIGETDNAFRTYRFDLSSAAKIGQNTLRITFHSSVEAGKALYDAHLFEIPWSTDNCPIPYGNFLRKPACDFGWDWNIALAPFGVYGDIKAEENAAPRIEGAHIRQDHSDQRVKLTVSVEVANFDEEVIFDFDGHAVSVGVENGKATAVIEVTDPSLWWPSGQGDQPLYGLTVTAGTAVEKRRIGLRTIELVTEADDIGLGFKFRVNGRDVFCKGANWIPADALQGRVTQDGVRDMLQSAKDANMNMIRIWGGGQYEPTWFYDLCDELGLMVWQDFMFACNLYPSDRVYLENVKAEVRDNVARLQHHACLAVWCGDNELIGALGWYDVSRKDRDRYLVNYDRLNRALEDTLFEVDPDAIWWPSSPSPGPMNFGDAWHDDGSGDMHFWSVWHENRDFDHYRDVGPRFCSEFGFQSYPTMNAIRRFSDPVDWNIASPVLESHQKNASAAGNARIAQTMFRYFRWPERFEDFVYLSQVQQGVAIKTAVTHWRSLKPRNMGTLIWQLNDTWPVCSWASLDHGGDWKVMHHMAKDFYADVIVTAVPMGDKIELRAVNDAPDSVELDVKLSAVSGTTARALSTQSLTVGTVAETVSSIAVSDLGAEEFLCIDWSYAGGSGREVYAPKPYKSYDLEDPNAKMAVNNAGETYDITVTSEGLALFTTVEADTEGRFSDNAFDMMPGETKILRFTLKDPSAQPNFSLRHLHNATYAKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RI00</accession>
    <name>A0A1M5RI00_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Outer membrane lipoprotein-sorting protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2596</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25798.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2596"/>
    <dbReference type="EnsemblBacteria" id="SHH25798">
        <property type="protein sequence ID" value="SHH25798"/>
        <property type="gene ID" value="SAMN05444003_2596"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd16325">
        <property type="entry name" value="LolA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029046">
        <property type="entry name" value="LolA/LolB/LppX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004564">
        <property type="entry name" value="OM_lipoprot_carrier_LolA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35869">
        <property type="entry name" value="PTHR35869"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03548">
        <property type="entry name" value="LolA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89392">
        <property type="entry name" value="SSF89392"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012115729" evidence="2">
        <location>
            <begin position="23"/>
            <end position="200"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH25798.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="200" mass="21719" checksum="A60F9E54BE50CDEA" modified="2017-03-15" version="1">MMFRRGFLAGAAALALATPASAQQLSLAEISNYLNRLQTAEGGFTQINGDGTLSTGQIYIKRPGRIRFEYNPPDDSLVMAGGGQVAIFDPRSNVPPERFPLNQTPLNIILEQNVDLTRTNMVTGHTSDGTTTTVRAQDPDNPQLGNIQLVFTADPIELRQWIVTDDIGAETTVILNDLESGGAVGDIQFNILNEMNKRGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RI36</accession>
    <name>A0A1M5RI36_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="13">Dual-specificity RNA methyltransferase RlmN</fullName>
            <ecNumber evidence="13">2.1.1.192</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">23S rRNA (adenine(2503)-C(2))-methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">23S rRNA m2A2503 methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">Ribosomal RNA large subunit methyltransferase N</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">tRNA (adenine(37)-C(2))-methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">tRNA m2A37 methyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="primary">rlmN</name>
        <name evidence="16" type="ORF">SAMN05444003_2580</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="13">Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="13">
            <text>adenosine(2503) in 23S rRNA + 2 reduced [2Fe-2S]-[ferredoxin] + 2 S-adenosyl-L-methionine = 2-methyladenosine(2503) in 23S rRNA + 5'-deoxyadenosine + L-methionine + 2 oxidized [2Fe-2S]-[ferredoxin] + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42916"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="Rhea" id="RHEA-COMP:10152"/>
            <dbReference type="Rhea" id="RHEA-COMP:10282"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74411"/>
            <dbReference type="ChEBI" id="CHEBI:74497"/>
            <dbReference type="EC" id="2.1.1.192"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="13">
            <text>adenosine(37) in tRNA + 2 reduced [2Fe-2S]-[ferredoxin] + 2 S-adenosyl-L-methionine = 2-methyladenosine(37) in tRNA + 5'-deoxyadenosine + L-methionine + 2 oxidized [2Fe-2S]-[ferredoxin] + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:43332"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="Rhea" id="RHEA-COMP:10162"/>
            <dbReference type="Rhea" id="RHEA-COMP:10485"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74411"/>
            <dbReference type="ChEBI" id="CHEBI:74497"/>
            <dbReference type="EC" id="2.1.1.192"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="13">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="13">Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 13">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="13">Reaction proceeds by a ping-pong mechanism involving intermediate methylation of a conserved cysteine residue.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 13">Belongs to the radical SAM superfamily. RlmN family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.192" evidence="13"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25453.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901903.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2580"/>
    <dbReference type="EnsemblBacteria" id="SHH25453">
        <property type="protein sequence ID" value="SHH25453"/>
        <property type="gene ID" value="SAMN05444003_2580"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070040">
        <property type="term" value="F:rRNA (adenine-C2-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002935">
        <property type="term" value="F:tRNA (adenine-C2-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070475">
        <property type="term" value="P:rRNA base methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01849">
        <property type="entry name" value="RNA_methyltr_RlmN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040072">
        <property type="entry name" value="Methyltransferase_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027492">
        <property type="entry name" value="RNA_MTrfase_RlmN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004383">
        <property type="entry name" value="rRNA_lsu_MTrfase_RlmN/Cfr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30544">
        <property type="entry name" value="PTHR30544"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006004">
        <property type="entry name" value="CHP00048"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00275">
        <property type="entry name" value="adenosine_C2_methyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00048">
        <property type="entry name" value="rRNA_mod_RlmN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 13" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="4 13" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="12 13" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="10 13" id="KW-0408">Iron</keyword>
    <keyword evidence="11 13" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="9 13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 13 16" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 13" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="8 13" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="7 13 16" id="KW-0808">Transferase</keyword>
    <keyword evidence="13" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="Radical SAM core" evidence="15">
        <location>
            <begin position="121"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="14">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="13">
        <location>
            <begin position="194"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="13">
        <location>
            <begin position="248"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="13">
        <location>
            <position position="115"/>
        </location>
    </feature>
    <feature type="active site" description="S-methylcysteine intermediate" evidence="13">
        <location>
            <position position="368"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="135"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="139"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="142"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="226"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="325"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007544"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="SHH25453.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="392" mass="43824" checksum="4B0AB0890F85A109" modified="2017-03-15" version="1">MTAKAPITQDVHTIPRKLPDGPTNTVGLTREALRDALIEMGTPEKQAKMRTGQIWQWVYHWGVRDFDAMTNLSKDYRAKLAEHFVVEIPELVTKQVSEDGTRKYLVRIAGGHEVEVVYIPETDRGTLCVSSQVGCTLTCSFCHTGTQKLVRNLTAAEIIGQVMMARDDLDEWPVPGAPKDETRLLSNIVLMGMGEPLYNFENVRDAMKIAMDGEGIALSRRRITLSTSGVVPEMARTAEEIGCQLAISFHATTDEVRDILVPINKRWPLEELLEALKSYPKVSNSERITFEYVMLDGINDSDEDAHRLVKLIEGIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYATPIRTPRGEDIMAACGQLKSATERARKSRKQIEAEAGLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RI93</accession>
    <name>A0A1M5RI93_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Dimethylglycine dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2605</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GcvT family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25974.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901744.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH25974">
        <property type="protein sequence ID" value="SHH25974"/>
        <property type="gene ID" value="SAMN05444003_2605"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032503">
        <property type="entry name" value="FAO_M"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013977">
        <property type="entry name" value="GCV_T_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006222">
        <property type="entry name" value="GCV_T_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029043">
        <property type="entry name" value="GcvT/YgfZ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027266">
        <property type="entry name" value="TrmE/GcvT_dom1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16350">
        <property type="entry name" value="FAO_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01571">
        <property type="entry name" value="GCV_T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08669">
        <property type="entry name" value="GCV_T_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101790">
        <property type="entry name" value="SSF101790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAO" evidence="2">
        <location>
            <begin position="9"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="domain" description="FAO_M" evidence="5">
        <location>
            <begin position="381"/>
            <end position="434"/>
        </location>
    </feature>
    <feature type="domain" description="GCV_T" evidence="3">
        <location>
            <begin position="437"/>
            <end position="705"/>
        </location>
    </feature>
    <feature type="domain" description="GCV_T_C" evidence="4">
        <location>
            <begin position="731"/>
            <end position="812"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF08669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF16350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH25974.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="820" mass="90875" checksum="3EB52FB31BB62CC2" modified="2017-03-15" version="1">MADFPTSARVVIIGGGVVGVSTLYHLAKMGWTDCVLLEKNELTAGSTWHAAGNCPSFSTSWGVMNMQRYSLGLYAGLAEEVDYPMNYHVTGSLRLSHSKERTQEFQRAMGMANYQGLSMEMLTPDQAVGMYPFLETHDIDSVLFDPDDGDIDPAQLTQALAKGAREMGANIQRFCPATGVTQKPNGTWTVHTEKGDIDCEKVVNAAGYYAQRVGEWFKPYGGRTVPMATMSHQYFLTEEIPELKEWTEKNGRKIPLLRDVDSSYYLRQDKNGLNLGPYERNCKAHWITKDDPMPDDFSFQLYPDDLERLEWYIEDAMARVPLLGTAGVGRVINGPIPYAPDGLPLVGPMPGVKNAFEACVFTFGITQGGGAGKVAAEWIVNGETEWDMWSVDPRRYTDYTDEQYCIDKAMEVYGHEYAMHFPQHEWPAARDRKHSTLHSRLQDAGAVFGPYNGWERANWFAQESDDTSLEATETWSRNGPWQQRVKEECEAVRDHCGMLPITGFSRFKVEGAGARDYIDSLSASRLPSPGRIGLIYFADARGRIVTEMSAVVHSDDHVSLITAAVAQWHDAEVIKANAPEGITVTDRTKEVECLLVTGPKAREILAPLTEGHDLSKGWLTTSLAEEGTIAGEACAMVRVSFAGELGWEIHCPPASMPAIWDALSDAGVKPFGMYALNALRMEKGYRAWKGDLSTDYSLLEGGLDRFTKLDKPHDFPGKAALLAEKQRGVSKRFTTLTLDAPGEYDAPYMSTIWHDGAVVGETTSGAFGYRTNQSIALAMVQAELSTPGTKLEVEIYGERYAATVQEDQPLWDPANERIRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RIU4</accession>
    <name>A0A1M5RIU4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2610</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26076.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901751.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH26076">
        <property type="protein sequence ID" value="SHH26076"/>
        <property type="gene ID" value="SAMN05444003_2610"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="6"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="29"/>
            <end position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH26076.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="192" mass="21001" checksum="6C9203C17EE652CE" modified="2017-03-15" version="1">MPRKPEYDREELIDRACDLFWTKGWAGTSMKDLEQTLGLKPGSFYAAFGSKAALYELTLDRYAQKGMTRLSAMVAEHGPLGALQTYPMLVIDDSAASVKACMLAKTVLELRGQNDPLADCANAHLTDKEGQFADVFQKAQEAGQISTEYDPIALARRYQSDLLGLRVSAERSGVDAHAIAQEISDSLARLAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RJ72</accession>
    <name>A0A1M5RJ72_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Ribosomal RNA large subunit methyltransferase H</fullName>
            <ecNumber evidence="4">2.1.1.177</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">23S rRNA (pseudouridine1915-N3)-methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">23S rRNA m3Psi1915 methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">rRNA (pseudouridine-N3-)-methyltransferase RlmH</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rlmH</name>
        <name evidence="5" type="ORF">SAMN05444003_2614</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>pseudouridine(1915) in 23S rRNA + S-adenosyl-L-methionine = H(+) + N(3)-methylpseudouridine(1915) in 23S rRNA + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42752"/>
            <dbReference type="Rhea" id="RHEA-COMP:10221"/>
            <dbReference type="Rhea" id="RHEA-COMP:10222"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:65314"/>
            <dbReference type="ChEBI" id="CHEBI:74486"/>
            <dbReference type="EC" id="2.1.1.177"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the RNA methyltransferase RlmH family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.177" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26158.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901757.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2614"/>
    <dbReference type="EnsemblBacteria" id="SHH26158">
        <property type="protein sequence ID" value="SHH26158"/>
        <property type="gene ID" value="SAMN05444003_2614"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070038">
        <property type="term" value="F:rRNA (pseudouridine-N3-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd18081">
        <property type="entry name" value="RlmH-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00658">
        <property type="entry name" value="23SrRNA_methyltr_H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029028">
        <property type="entry name" value="Alpha/beta_knot_MTases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003742">
        <property type="entry name" value="RlmH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029026">
        <property type="entry name" value="tRNA_m1G_MTases_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33603">
        <property type="entry name" value="PTHR33603"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02590">
        <property type="entry name" value="SPOUT_MTase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004505">
        <property type="entry name" value="MT_bac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75217">
        <property type="entry name" value="SSF75217"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 4 5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="3 4" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 4 5" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="4">
        <location>
            <begin position="123"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="104"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00658"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH26158.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="156" mass="17178" checksum="4FF43F04AB9DACBB" modified="2017-03-15" version="1">MKVSFSAIGKLGARSEERVLTDDYLKRFAQTGRQLGWQFTGETEADDKRSLGMAEEAKLLRKAIPNGALIVTMDERGKLLTSPEFASQMTKWADQGRDTAFVIGGADGIDPSLRAEADFSISLGKMVWPHKLVRVMLAEQLYRAASIATGAPYHRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RJF5</accession>
    <name>A0A1M5RJF5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2619</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26266.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901770.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2619"/>
    <dbReference type="EnsemblBacteria" id="SHH26266">
        <property type="protein sequence ID" value="SHH26266"/>
        <property type="gene ID" value="SAMN05444003_2619"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="73"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="143"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="200"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="232"/>
            <end position="256"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH26266.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="279" mass="30362" checksum="708094BF4485F72D" modified="2017-03-15" version="1">MFSRLPGALFRAFLVVLLIVVPSVFLPLASSDGSLVVLLIAMCAAFFTLVEYAGASPSIVEFRDAPPFNRIRFFALFITVGILSVVLSDAVQTNLAAQLLEVLGQRIGESMDFPFSPVRLLVLMMPPDTNAATIEALRMSGGLAYLISLLSIAIFVIMLRLKRWPRRSGTFNVWVNLPRFDPTAGGDVVARLNKDSGVNLILGFLLPFVIPAVVKLVTLFGGSVNISNPQTMLWMITAWAFLPASLLMRGVALNRVAQLIHTQRKKAYAQAVSDGMLPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RL99</accession>
    <name>A0A1M5RL99_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Two component transcriptional regulator, winged helix family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2648</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26959.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901815.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2648"/>
    <dbReference type="EnsemblBacteria" id="SHH26959">
        <property type="protein sequence ID" value="SHH26959"/>
        <property type="gene ID" value="SAMN05444003_2648"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="3"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="5">
        <location>
            <begin position="133"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="3">
        <location>
            <begin position="133"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH26959.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="233" mass="26867" checksum="3B07F8A34205F84E" modified="2017-03-15" version="1">MSKIALVDDDRNILTSVSMTLEAEGFEVETYNDGQAALDAFNKRMPDMAVLDIKMPRMDGMDLLQRLRQKTSMPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLRRQDAISGETIEETEDTKVMVRGELTMDPLRHAVKWKGKDVSLTVTEFLLLQALAQRPGFVKSRDQLMDVAYDDQVYVDDRTIDSHIKRLRKKMRMADDEFSAIETLYGIGYRYNEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RN78</accession>
    <name>A0A1M5RN78_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">S-adenosylmethionine uptake transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2682</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH27722.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901868.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2682"/>
    <dbReference type="EnsemblBacteria" id="SHH27722">
        <property type="protein sequence ID" value="SHH27722"/>
        <property type="gene ID" value="SAMN05444003_2682"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="36"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="79"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="103"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="128"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="151"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="181"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="211"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="243"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="266"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="8"/>
            <end position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH27722.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="294" mass="31644" checksum="46B144AD3CE0ABD8" modified="2017-03-15" version="1">MAMLSENMRGALLMVGSMTAFTLNDAFMKSLSDELPLFQSIFFRSIGVFICLSIAGLAMGQIKLNQSRRDWMFISLRSLFELGGALFFLLALFNMPIANVTAILQVLPLTVSLAAAVFLGASLGWRRLSAILVGFAGVLLIVKPGGEGFNIYAVSALLAVLCVTIRDILVRKISPEVPTMLVSWFTVFAVMAGSGLASLTEVWQPVSSLAAFQLGGAILTIIGGYIFSVAVMRHGDIAFVAPFRYSSLLVAVVIGFWIFGEVPDTLTIVGSIIVVGTGLFTLYREGQIRKRAKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RV63</accession>
    <name>A0A1M5RV63_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">DNA-binding transcriptional regulator, LacI/PurR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2714</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30185.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901966.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2714"/>
    <dbReference type="EnsemblBacteria" id="SHH30185">
        <property type="protein sequence ID" value="SHH30185"/>
        <property type="gene ID" value="SAMN05444003_2714"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01392">
        <property type="entry name" value="HTH_LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000843">
        <property type="entry name" value="HTH_LacI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046335">
        <property type="entry name" value="LacI/GalR-like_sensor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00356">
        <property type="entry name" value="LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13377">
        <property type="entry name" value="Peripla_BP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00354">
        <property type="entry name" value="HTH_LACI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50932">
        <property type="entry name" value="HTH_LACI_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH lacI-type" evidence="4">
        <location>
            <begin position="3"/>
            <end position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH30185.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="332" mass="35459" checksum="A561244A1192B3DB" modified="2017-03-15" version="1">MAVTLKDVSERAGVSRSAVSRTFTEGASVSARTREKVEKAASELGYSPNALASSLTTGRTKMIGVVSNNFHNPIFLEVFDLVTKGLQESGLRPLLVNLSDETDPANSVRMLRQYSVDGVIVASSTLPVTFAEAFQDAGVPVVHPFGRQVADPKVTTIGIDNHAAGRMAAETLIARGYRRIAFLGGPKSATSTQDRCAGFLGEASQHAGIETSVSYADSYSFDGGRDEMTRLIDGTLADAYFCGDDVVSIGALSSLETAGIAVPEEVGLIGLNDMEMAGWANINLTTIHNPIGEIIRESIELMKGMLSSERKWPEARLHSGRIVERGTLRPLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S0M1</accession>
    <name>A0A1M5S0M1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Lipoprotein-anchoring transpeptidase ErfK/SrfK</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2794</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the YkuD family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2794"/>
    <dbReference type="EnsemblBacteria" id="SHH32004">
        <property type="protein sequence ID" value="SHH32004"/>
        <property type="gene ID" value="SAMN05444003_2794"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071972">
        <property type="term" value="F:peptidoglycan L,D-transpeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd16913">
        <property type="entry name" value="YkuD_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005490">
        <property type="entry name" value="LD_TPept_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038063">
        <property type="entry name" value="Transpep_catalytic_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03734">
        <property type="entry name" value="YkuD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141523">
        <property type="entry name" value="SSF141523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="YkuD" evidence="4">
        <location>
            <begin position="94"/>
            <end position="227"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF03734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH32004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="287" mass="31788" checksum="6B4025433129F869" modified="2017-03-15" version="1">MLTADRIAESQLGMNMISDSITRRSFGALMLSSAAACGQLPFSNPEVEETPQFLEGYGPIFDAGYTLPGIPEEYTQGINRRMEGFYTGEAEPGTIDVDPYSKFLYLIQEDGRAVRYPVGVGRAGRSFSGRGTIQLKKKWPGWTPTQNMIRTEPDVYGPFRRGIPGGLRSPLGARALYLYRGGRDTFYRIHGTNDLESIGNSGSAGCIRMFNQDIIDLYNRVSTPMKVNVRSEAESLRVDPEYFGRGVELPPKFLDADEVYNALETDTPPDFDAVDPALIPEVVESEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S2S9</accession>
    <name>A0A1M5S2S9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2805</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32273.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902102.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2805"/>
    <dbReference type="EnsemblBacteria" id="SHH32273">
        <property type="protein sequence ID" value="SHH32273"/>
        <property type="gene ID" value="SAMN05444003_2805"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003313">
        <property type="entry name" value="AraC-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018062">
        <property type="entry name" value="HTH_AraC-typ_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02311">
        <property type="entry name" value="AraC_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00041">
        <property type="entry name" value="HTH_ARAC_FAMILY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="4">
        <location>
            <begin position="195"/>
            <end position="264"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH32273.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="272" mass="30404" checksum="5B3099A16ADF4C07" modified="2017-03-15" version="1">MVAVLNFKDICAKGEHVHFARTALTTARPNPLHSHDFFELFWVQNGQVRHHLPDSTETLTEGDLVLVPPGQEHGVQAKGEHSLLVSVSLDPEVVHQLVARHQNDLPDLTTLQFATIDSRDLASLNRAALRLERSNRGDLATEAFLLPILLAFAKKDVPQNIPSWLIDAMEAARNPEVFQNGSAGLVALTGKAHAHVSRTMRAQLGQSPSEFINDIRMTYAARQLVTDDEAVQTIAEQCGIPNMAHFHKLFRERHGTTPLKYRQKYQRDVIQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SBN6</accession>
    <name>A0A1M5SBN6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, LacI family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2889</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36042.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2889"/>
    <dbReference type="EnsemblBacteria" id="SHH36042">
        <property type="protein sequence ID" value="SHH36042"/>
        <property type="gene ID" value="SAMN05444003_2889"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01392">
        <property type="entry name" value="HTH_LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000843">
        <property type="entry name" value="HTH_LacI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046335">
        <property type="entry name" value="LacI/GalR-like_sensor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00356">
        <property type="entry name" value="LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13377">
        <property type="entry name" value="Peripla_BP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00354">
        <property type="entry name" value="HTH_LACI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50932">
        <property type="entry name" value="HTH_LACI_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH lacI-type" evidence="4">
        <location>
            <begin position="17"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH36042.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="378" mass="41177" checksum="8E44FB3EA1AB4ADD" modified="2017-03-15" version="1">MAAAQRQNGRSRPGRRATISDVSNALGLTKSTVSRALNDYPDIAETTRARVKRMAQKLGYRPLATAQSIRTGRVRAIGFIIELAEHDAHRPFMAEFLAGMSRSASAEGWTLTVAASSTPEETLEIISKLQMESKADGFIIPRTLIDDERITRLRNDYIPFVTFGRTNSDEETVWYDIAGEEAMRSAVLHLHDLGHDRIAFVNGGSKYKYSELRREGYIQGLTDAGLDIDHSLIFEECLSEEDGRAAAQSILAADNPPTAFVYALDRAALGLYPLAKELDLTIGEHLSVISYDGVPEGAAVEPPLSTYAVDIARAGERLGALLIRHLRDDEAKDLHELEQATFLDRGSAGAPALTSAQLSAHLRGLGPKGAFSNGRNST</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SGR3</accession>
    <name>A0A1M5SGR3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">8-oxo-dGTP pyrophosphatase MutT, NUDIX family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2965</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37792.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902545.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2965"/>
    <dbReference type="EnsemblBacteria" id="SHH37792">
        <property type="protein sequence ID" value="SHH37792"/>
        <property type="gene ID" value="SAMN05444003_2965"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="1">
        <location>
            <begin position="18"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH37792.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="149" mass="16756" checksum="0B4A3479AB6EA76B" modified="2017-03-15" version="1">MIAQLKSAFAEAKSYFRPPVSQVAALCHRETKTGRKVLLITSSNGRWIFPKGWPMDGKTDAQAAMQEAWEEAGVKSGEVANDPLASYRGEKKYDDGRTIACQTNVYAVEVTDTKKRFPEANKRDRKWVDIEEAKDLIDDDGMRDALDQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SIK6</accession>
    <name>A0A1M5SIK6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2980</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38108.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH38108">
        <property type="protein sequence ID" value="SHH38108"/>
        <property type="gene ID" value="SAMN05444003_2980"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH38108.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="36" mass="3920" checksum="AC5A6F2630A4DF23" modified="2017-03-15" version="1">MRIFLIAALVTTLTACETVKGIGRDITRAAETVDRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SKV4</accession>
    <name>A0A1M5SKV4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Fatty-acyl-CoA synthase/long-chain acyl-CoA synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3028</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH39192.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902478.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3028"/>
    <dbReference type="EnsemblBacteria" id="SHH39192">
        <property type="protein sequence ID" value="SHH39192"/>
        <property type="gene ID" value="SAMN05444003_3028"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="34"/>
            <end position="476"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="485"/>
            <end position="561"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH39192.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="628" mass="68531" checksum="84F4C6CEF8EE89F0" modified="2017-03-15" version="1">MAYANVADRNAIENEMPWESRELPTTTFEMLSNTASKFSGRKAVTFQLQSGVSDPDETFTWGQLRDKTAQTANLFRSLGVGENDVVAYLLPNASETVLTYLGGQVAGIVNPINPLLEAEQIAAILRETNAKVLVTLKAFPKTDVPQKAAEALAMAPNVKTVLEVDLLRYLTGLKKFIVPLIRPKNPVKHNAKVLDFMSEVNKQPKELAFADSTEDRVAAYFHTGGTTGMPKVAQHRYSGIIYNAWLGDRLLFTENDVQMCPLPMFHVFAAIVSLGASLGSGAQIVFPTPQGYRGDGVFDNFWKLIERHKATFMITVPTAMSALMQRKVDADISTLRLAFCGSAPLPLELYRRFEEAAGVTICEGYGLTEATCLVSINPPDGEKKVGSIGVPFPYCDVKIMSTATGEESTMGEIGEICVSNPGVYMGMTYTEEDKNVNLFYPGPKSNAQYLRTGDLGRLDEDGYLWITGRAKDLIIRGGHNIDPAEIEEALAGHDAVAFAGAIGQPDAHAGEVPCAYVELVEGATISEEELRAYAKEHIHERAAHPKHLEIMAELPKTAVGKIFKPDLRKSAMTRVFNAALADVDASIDSVVEDKKRGLVSKVAKGPNCDEAEVAKIMGSYANKWDWVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SQW7</accession>
    <name>A0A1M5SQW7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Carbohydrate ABC transporter substrate-binding protein, CUT1 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_3049</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial solute-binding protein 1 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH40886.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902571.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3049"/>
    <dbReference type="EnsemblBacteria" id="SHH40886">
        <property type="protein sequence ID" value="SHH40886"/>
        <property type="gene ID" value="SAMN05444003_3049"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006059">
        <property type="entry name" value="SBP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01547">
        <property type="entry name" value="SBP_bac_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0574">Periplasm</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012883827" evidence="4">
        <location>
            <begin position="23"/>
            <end position="410"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH40886.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="410" mass="42708" checksum="7BF6AB05A6F2CF5F" modified="2017-03-15" version="1">MFLKKIALAGTFAGLMGTAAYACGPSGESVRILGSDFPAIQAVSGTAQANCGGDAGEFTVTLRDDTRDMMNQAQTPNPAQYTSVIVANSTLTQLMNDGLVRPLDDLVAKYGQDLNPNQMITIDGQIMAVAFMANSQHLYSRTDILEQAGVEGIPATVDEVVAAAQAIRAAGIMEYPIVLNASGWNMGELFNLFYFAHGGELFKPGSAEPNVNNEIGVAALNSIKSLTEYAHPDHLSHASNETQGLWEAGQAALGIMWGSRGGAILDDEGSSPEVTENTVLSAAPTVDGGSIPAATLWWDGVTIATNISDAEAEATFAALASAMSADMVAEHNDDAIWLIDGYQPGPAAAGVSATAQGGAKPYPMIPYVNFMHNAASAELADFLKGDESAEQTLSDIEAAYTTAATEAGFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SR65</accession>
    <name>A0A1M5SR65_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, LacI family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_3056</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41012.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902585.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3056"/>
    <dbReference type="EnsemblBacteria" id="SHH41012">
        <property type="protein sequence ID" value="SHH41012"/>
        <property type="gene ID" value="SAMN05444003_3056"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01392">
        <property type="entry name" value="HTH_LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000843">
        <property type="entry name" value="HTH_LacI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046335">
        <property type="entry name" value="LacI/GalR-like_sensor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00356">
        <property type="entry name" value="LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13377">
        <property type="entry name" value="Peripla_BP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00354">
        <property type="entry name" value="HTH_LACI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50932">
        <property type="entry name" value="HTH_LACI_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH lacI-type" evidence="4">
        <location>
            <begin position="6"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH41012.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="340" mass="36281" checksum="DC491AF9F60CD9F2" modified="2017-03-15" version="1">MAQTKVTSAEVAARAGVSQSAVSRVFTPGASASAKTVEKVKAAAKELGYRPNVLARAMVSGKSRIIGLVVAYLDNHFFPVALELLSNELQKKGYHVLIFTAPNSVDAVDNLVQELMDYQVDGIIAASVSMSSTLADRAKLAGIPVVLFNRGLDGSGMSSVTSTNTEGGRKVAEFLVDAGHQRIAHISGWSGSSTGRDRAFGFKESLAKSGHALVAEIDGMYSREVASEAARDLMSRPDPPDAIFVGNDHMAFAVMDTIRFELGLRVPEDVSIVGYDDVPMASWAAYDLTTVRQPVNQMTEATIDTLLGQINDPTRTSTKIEIPGPLIARGSARRPEGWTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SRQ3</accession>
    <name>A0A1M5SRQ3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Demethylmenaquinone methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3061</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41097.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902593.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3061"/>
    <dbReference type="EnsemblBacteria" id="SHH41097">
        <property type="protein sequence ID" value="SHH41097"/>
        <property type="gene ID" value="SAMN05444003_3061"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd16841">
        <property type="entry name" value="RraA_family"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005493">
        <property type="entry name" value="RraA/RraA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036704">
        <property type="entry name" value="RraA/RraA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03737">
        <property type="entry name" value="RraA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89562">
        <property type="entry name" value="SSF89562"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH41097.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="230" mass="24784" checksum="98C91C8E959A8E8C" modified="2017-03-15" version="1">MDDALLTLLRSVDTPTVCNAIEVVEGKRGFNNFTRGTMQISDPNGVLIGYARTAKIAAIDPPTEAPDVIKKRRMAYYEQMATGPRPALAVVEDLDGNDAIGAFWGEINTTVHKGFGLCGALTNGVMRDLGDLPNGFPVIAGQIGPSHGFVHVKEIGTPVRIFGLEIADGDLVHADRHGALVIGKEHIEGLAVAIKKLLDTESIVLDAARRADFDFESFADAWSRFEAERT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SSC2</accession>
    <name>A0A1M5SSC2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Hemolysin-type calcium-binding repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_3077</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41405.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902612.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3077"/>
    <dbReference type="EnsemblBacteria" id="SHH41405">
        <property type="protein sequence ID" value="SHH41405"/>
        <property type="gene ID" value="SAMN05444003_3077"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090729">
        <property type="term" value="F:toxin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.150.10.10">
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018511">
        <property type="entry name" value="Hemolysin-typ_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001343">
        <property type="entry name" value="Hemolysn_Ca-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003995">
        <property type="entry name" value="RTX_toxin_determinant-A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011049">
        <property type="entry name" value="Serralysin-like_metalloprot_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00353">
        <property type="entry name" value="HemolysinCabind"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01488">
        <property type="entry name" value="RTXTOXINA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51120">
        <property type="entry name" value="SSF51120"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00330">
        <property type="entry name" value="HEMOLYSIN_CALCIUM"/>
        <property type="match status" value="7"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0964">Secreted</keyword>
    <keyword evidence="3" id="KW-0800">Toxin</keyword>
    <keyword evidence="4" id="KW-0843">Virulence</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="595"/>
            <end position="706"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="610"/>
            <end position="633"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH41405.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="861" mass="89551" checksum="9B5D376C55267E6E" modified="2017-03-15" version="1">MSDIFGTSNNEFLQGTRDPDKIVGLAGDDVIEGAAGEDTIYGDFDPVNLLEGTEGASSFSEFGATGAWQVQDNPDGSTSMTQTVETVANTTYSISFDIAANYGAQSLSGAVEVLWNGVVIDSFDTNSAVFSAHSVDFSGTGGPGELTFKSAESSAENSGPVINTDGPAFWYQKTVSFGEAELNVSAFAEGQTHVYQVMNGTLNVFDVETETYNKAGIDSNVNINAIGFNQEDDLLYGIAVGNGTDTLGNSVSYGDLMMIDAQGKNYNLGSTPYRSWTADFDNNGNLWSFHSSMDRLTMIDVDQFDSDGNPITTTFKFPTDLVTDKMWDVAFDEATQSFYGLVKPSAEGQPGKLYTIDISEVANGGQPTFTSVSVTSSKINGVVKQGMPALTFGALMLDSDGNLYAGGNGGDHDMNNSTRTSGGIYKLELDASTGEYSLVLIADAPKAYSNDGAMDPRTSDPFKAKDTSVNVLIKSPELTPKLDANETYDDIIHGGGGKDNLSGGFGIDEIVGSSLGDTIDGGVGDDALYGGAGPDAVSNGLISIYDANGLRYDQFGNLLPEDDDILIGGDGNDLLDGSAGYDTLYGGVGDDTLNGGTGNDELHGGDGNDILSGGKHDDVLKGDEGDDHLDGGTGADELQGGEGDDLIFGGKHDDVIAGGVGSDDIQGGSGNDTIDGGDGDDVINSGSDDDDVMGGVGNDHIDSSSGNDTVYGGAGNDHIKSGSGNDVVVGGEGNDYISAHKGDDVIDGGTGRDKINAGSGADVISGGAGSDTFVFRSDVLDGEKNIIQDFTRTGSENDRLDLRSLNLLAADQTEAEWIQENVDKNTSSITINLGSTTIVLIDHNDLGVENFLDEISDGFLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SSZ4</accession>
    <name>A0A1M5SSZ4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Dihydroxyacetone kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_3088</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41625.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902812.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3088"/>
    <dbReference type="EnsemblBacteria" id="SHH41625">
        <property type="protein sequence ID" value="SHH41625"/>
        <property type="gene ID" value="SAMN05444003_3088"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004371">
        <property type="term" value="F:glycerone kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006071">
        <property type="term" value="P:glycerol metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.340">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004006">
        <property type="entry name" value="DhaK_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004007">
        <property type="entry name" value="DhaL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036117">
        <property type="entry name" value="DhaL_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02733">
        <property type="entry name" value="Dak1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02734">
        <property type="entry name" value="Dak2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01120">
        <property type="entry name" value="Dak2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101473">
        <property type="entry name" value="SSF101473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51481">
        <property type="entry name" value="DHAK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51480">
        <property type="entry name" value="DHAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 7" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DhaK" evidence="6">
        <location>
            <begin position="7"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="domain" description="DhaL" evidence="5">
        <location>
            <begin position="352"/>
            <end position="539"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51480"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH41625.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="539" mass="55340" checksum="FA7581100353430F" modified="2017-03-15" version="1">MQHFINQKENMVTDAIDGTIKASGGKLTRLDGYPHIRVVVRSDWDKSKVALVSGGGSGHEPSHAGFVGKGMLTAAVCGDVFASPSVDAVLAGILAVAGPAGCLLIVKNYTGDRLNFGLAAERARAFGHKVSMVIVDDDVALPDLPQARGVAGTLFVHKIAGAMAENGANLEACTLAAERVVKSTRTIGMSLDTCTVPGSLKEDRIPHGMAELGLGIHGEAGVEQVASNGAADAIAKVTEKLADGMPRTPHVALVNNLGGASCLEMSILTNSLLASELGSNIRHVVGPDALMTALDMHGFSISLLELAEGDEKHLAQPVEASAWPGMNEIAEPDVLPLPDGLSPIRAPASAHDATKEFLVACCTVLIESEADLNALDAKSGDGDTGSTLASAARALIDAMDSLPLADHTQLYRAIGLELSQTMGGSSGVLLAIFFAAAGDASSSGLPMKDALRAGLDRMREIGGANPGDRTMVDALIPALDGLKTSMSSAATAARKGANYTATLTTAKAGRASYINADQLDGHVDPGAEAVARLFEHLAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SUL2</accession>
    <name>A0A1M5SUL2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">TVP38/TMEM64 family membrane protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3119</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the TVP38/TMEM64 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42120.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3119"/>
    <dbReference type="EnsemblBacteria" id="SHH42120">
        <property type="protein sequence ID" value="SHH42120"/>
        <property type="gene ID" value="SAMN05444003_3119"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032816">
        <property type="entry name" value="SNARE_assoc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015414">
        <property type="entry name" value="TMEM64"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12677">
        <property type="entry name" value="PTHR12677"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09335">
        <property type="entry name" value="SNARE_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="55"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="95"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="134"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="183"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="214"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="256"/>
            <end position="276"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU366058"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH42120.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="282" mass="30503" checksum="2DD0F879E36132BD" modified="2017-03-15" version="1">MPYETESSLTTSSSAREVGILVFICSPSRVQTPRPEDEKVSTMSEPNENAFLRKLPLIIIVTVAIIGAFFLRDYLSFEALRDNREALLAFRDENYILTVAVFILAYVVIVAFSLPGAAIATLTGGFLFATFPGALYNVIGATVGATAIFLAARWGFGEKLGAKLEGSEGVVKQIKDGIDENQWSMLFLIRLVPAIPFFLANLIPSFLEVPLRRFVISTFFGIMPGSIVYTSVGAGLGEVFESGETPNLGIIFEPAIFLPIAGLCALALLPIVIKAIRGKKEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SVM6</accession>
    <name>A0A1M5SVM6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phosphohistidine phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3141</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42526.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902708.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3141"/>
    <dbReference type="EnsemblBacteria" id="SHH42526">
        <property type="protein sequence ID" value="SHH42526"/>
        <property type="gene ID" value="SAMN05444003_3141"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd07067">
        <property type="entry name" value="HP_PGM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013078">
        <property type="entry name" value="His_Pase_superF_clade-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029033">
        <property type="entry name" value="His_PPase_superfam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00300">
        <property type="entry name" value="His_Phos_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00855">
        <property type="entry name" value="PGAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53254">
        <property type="entry name" value="SSF53254"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH42526.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="163" mass="18229" checksum="D55BFB79CC80082C" modified="2017-03-15" version="1">MTKRLILIRHAKSGWDDPFADDHQRVLTERGRKASATIGNWLRRMDYLPDRMLVSDAARTKETAELLFGALGCNASVVFKPMLYHASPDTILDLILRETDETIAVIGHNPGIAMLAHGLVKDRPKHDRFSDYPTCATTVIDFEAGVRIGQGRCLDFIVPRDLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SXL3</accession>
    <name>A0A1M5SXL3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3177</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH43206.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH43206">
        <property type="protein sequence ID" value="SHH43206"/>
        <property type="gene ID" value="SAMN05444003_3177"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH43206.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="143" mass="15549" checksum="D6537AEAD10423F2" modified="2017-03-15" version="1">MPFFKVLLLGLLSLVGGCTDLISTKVINPYPDEPERHMRISTSLRAISGVAWSLEQDGSFVSFGGPLGGKIDFPLSRVILISNTGITLETASDTFREATKVQTLHDEAEAYCGEIGYIRKEIGGSYVGTKNGDLFFVDLCEPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T2X9</accession>
    <name>A0A1M5T2X9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Rhodanese-related sulfurtransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3209</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45048.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902846.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3209"/>
    <dbReference type="EnsemblBacteria" id="SHH45048">
        <property type="protein sequence ID" value="SHH45048"/>
        <property type="gene ID" value="SAMN05444003_3209"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.250.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001763">
        <property type="entry name" value="Rhodanese-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036873">
        <property type="entry name" value="Rhodanese-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00581">
        <property type="entry name" value="Rhodanese"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00450">
        <property type="entry name" value="RHOD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52821">
        <property type="entry name" value="SSF52821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50206">
        <property type="entry name" value="RHODANESE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Rhodanese" evidence="1">
        <location>
            <begin position="32"/>
            <end position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH45048.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="132" mass="14645" checksum="3CE5274C15B7150E" modified="2017-03-15" version="1">MKKLKVSAAEMVADARARIEEVETPDLIAMVDDPNVIIVDIRDIRERQKGHIPGSVHAPRGMVEFWVDPDSPYFKEVFGQDKKYVLHCASGWRSALTVATLQEMGFDAAHLREGFSTWEAQGGPVEVPAPKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T9X4</accession>
    <name>A0A1M5T9X4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Predicted dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3296</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000009">
        <property type="protein sequence ID" value="SHH47557.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072903002.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000009.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH47557">
        <property type="protein sequence ID" value="SHH47557"/>
        <property type="gene ID" value="SAMN05444003_3296"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004104">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000683">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01408">
        <property type="entry name" value="GFO_IDH_MocA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02894">
        <property type="entry name" value="GFO_IDH_MocA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GFO_IDH_MocA" evidence="1">
        <location>
            <begin position="21"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="domain" description="GFO_IDH_MocA_C" evidence="2">
        <location>
            <begin position="159"/>
            <end position="392"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH47557.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="393" mass="42517" checksum="A8A96571DF6EBABD" modified="2017-03-15" version="1">MLLPGQIDFEGPFPKFSRRLRLGVVGGGRVSGMQATAARLSYRWDVVAGAMSSDPVRAKTAAADWFLDEDRCYTSFAEMAEVEAARDDGVDAVMITTPNHLHHDAAIAFLNKGIDVLCDKPLTNEVSEADALIEAAEKSGCVFGVSYVMSCFAVIRQARDLVASGAIGRINQIHVEFMQDWMTPDDVADAPHVKWRLDPAKSGKTSCVGDIGTHAAHLAQFVSGLAMKEVRADFHVCGAPKPLEDTAFMTTRFEGGVPGTLMCTRLAPGNRGGLRLRIFGSEGGIEWDLENSEQLKLNRFGQPDQIISRGHGHGMTTANERLVRTARGFPEGIIEAWGNLYTEFAMAVAARKDGIRAPSDWLGMPRVADGAKGVAFIEASFQSHQSGGAWVHI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L0M7</accession>
    <name>A0A1M5L0M7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">HTH-type transcriptional regulator MetR</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_0033</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58634.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900319.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0033"/>
    <dbReference type="EnsemblBacteria" id="SHG58634">
        <property type="protein sequence ID" value="SHG58634"/>
        <property type="gene ID" value="SAMN05444003_0033"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009086">
        <property type="term" value="P:methionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd08441">
        <property type="entry name" value="PBP2_MetR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037406">
        <property type="entry name" value="MetR_PBP2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-0486">Methionine biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="7">
        <location>
            <begin position="3"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00019365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG58634.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="307" mass="34300" checksum="F960754F9348DD86" modified="2017-03-15" version="1">MHIEFRHLRTIKAIHDTGGLARAADMLNITQSALSHQIKGIEDQAGVELFVRRTKPLRLSAAGLKMLAAAETILPQVAALEAEFEGLVAGSAGRLHIAIECHACFEWLFPVLEEFRKAWPEVDVDIRPGLAFDALPALKREEVDLVVSSDPEDIDETDFTPIFDYEPVFVASSQHPLAQKKFIEASDFEGETLITYPVERSRLDVFSQLLMPAGVEPAEVRQVELTAVILLLVASNRGVAVLPDWVVREVRYNSDYVTRPLTDKGITRRLYAATRSEDTGLPYMAHLLRLARQEAVKLQRPMRDAHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L138</accession>
    <name>A0A1M5L138_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Helix-turn-helix</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0042</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58822.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900321.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0042"/>
    <dbReference type="EnsemblBacteria" id="SHG58822">
        <property type="protein sequence ID" value="SHG58822"/>
        <property type="gene ID" value="SAMN05444003_0042"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="2">
        <location>
            <begin position="19"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="102"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG58822.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="131" mass="14449" checksum="085B5B400FA17649" modified="2017-03-15" version="1">MTATENWYAEDAATFGDRLAAAREAAGLTQAELAKRLGVKTSVVQAWEDDIKEPRANRLQMLSGMLNVTLSWLLTGQGEGVDGPFDEAGPSDHSMQLLLADIRALRAEMTQSAERMGQLEKRLRKLMEDDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L2V1</accession>
    <name>A0A1M5L2V1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pimeloyl-ACP methyl ester carboxylesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0064</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59265.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898403.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0064"/>
    <dbReference type="EnsemblBacteria" id="SHG59265">
        <property type="protein sequence ID" value="SHG59265"/>
        <property type="gene ID" value="SAMN05444003_0064"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12697">
        <property type="entry name" value="Abhydrolase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="46"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG59265.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="252" mass="27334" checksum="B070261457E9DCCD" modified="2017-03-15" version="1">MTSDLAKPVSFTSPQGRRIAYHLTEGTGPTVVFLGGFKSDMGGTKAVFLEERAKAQGRGFLRFDYSGHGESGEEFTDGSIGDWFEDACAALALVDGPVLLVGSSMGGWISLLVSRTMPEKVAGLVTIAAAPDFTEDSMWAGFDEVQRAELESEGQVALPSDYGEPYIITKRLIEEGRDRLVLRDPLPLNFPVRFLQGTADEDVEMSVALRLLEHADGPDMRLTLVDGADHRFSDETCLALIVDAVEDVSSRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L4V5</accession>
    <name>A0A1M5L4V5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8 19">Adenosylcobinamide-GDP ribazoletransferase</fullName>
            <ecNumber evidence="7 19">2.7.8.26</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="18 19">Cobalamin synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="17 19">Cobalamin-5'-phosphate synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="19" type="primary">cobS</name>
        <name evidence="20" type="ORF">SAMN05444003_0108</name>
    </gene>
    <organism evidence="20 21">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="20 21" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20 21">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="16 19">Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 19">
            <text>adenosylcob(III)inamide-GDP + alpha-ribazole 5'-phosphate = adenosylcob(III)alamin 5'-phosphate + GMP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:23560"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57918"/>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
            <dbReference type="ChEBI" id="CHEBI:60487"/>
            <dbReference type="ChEBI" id="CHEBI:60493"/>
            <dbReference type="EC" id="2.7.8.26"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 19">
            <text>adenosylcob(III)inamide-GDP + alpha-ribazole = adenosylcob(III)alamin + GMP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:16049"/>
            <dbReference type="ChEBI" id="CHEBI:10329"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:18408"/>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
            <dbReference type="ChEBI" id="CHEBI:60487"/>
            <dbReference type="EC" id="2.7.8.26"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3 19">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="5 19">Cofactor biosynthesis; adenosylcobalamin biosynthesis; adenosylcobalamin from cob(II)yrinate a,c-diamide: step 7/7.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="19">Cell membrane</location>
            <topology evidence="19">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="4">Membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6 19">Belongs to the CobS family.</text>
    </comment>
    <dbReference type="EC" id="2.7.8.26" evidence="7 19"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60122.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0108"/>
    <dbReference type="EnsemblBacteria" id="SHG60122">
        <property type="protein sequence ID" value="SHG60122"/>
        <property type="gene ID" value="SAMN05444003_0108"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00148">
        <property type="reaction ID" value="UER00238"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051073">
        <property type="term" value="F:adenosylcobinamide-GDP ribazoletransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008818">
        <property type="term" value="F:cobalamin 5'-phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00719">
        <property type="entry name" value="CobS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003805">
        <property type="entry name" value="CobS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34148">
        <property type="entry name" value="PTHR34148"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02654">
        <property type="entry name" value="CobS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00317">
        <property type="entry name" value="cobS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 19" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10 19" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="13 19" id="KW-0460">Magnesium</keyword>
    <keyword evidence="15 19" id="KW-0472">Membrane</keyword>
    <keyword evidence="21" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11 19" id="KW-0808">Transferase</keyword>
    <keyword evidence="12 19" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="14 19" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="63"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="91"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="138"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="166"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="208"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="256"/>
            <end position="276"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001017"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00004663"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00010561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00013200"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00015850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00025228"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00032605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="ARBA" id="ARBA00032853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00719"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="EMBL" id="SHG60122.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="277" mass="29292" checksum="57CC1E394E220450" modified="2017-03-15" version="1">MVATCLTIKIGNESAERGEFLQKGDTPPLVTWADVPAALGLLTRLPIRVDTDAAMERGAASAWAYPIVGICIAFITWMFASLFLWLGLPPLVIATFCLIIPVVLTGAMHEDGLADCADGLWGGWTKDRRLEIMKDSRIGAYGVLALVFSVMLRFGAVLGVLSTEVFWPALIVAATVSRTNMVVLMTFLPHAREGGLSQSVGRPSQSTMLVGCGVAIFVTLFFAGWATPFILVAAALSAFACAAIAKVKIGGQTGDVLGATQLVTEIVILICFATIAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L587</accession>
    <name>A0A1M5L587_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 10">Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase</fullName>
            <shortName evidence="10">NN:DBI PRT</shortName>
            <ecNumber evidence="4 10">2.4.2.21</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9 10">N(1)-alpha-phosphoribosyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">cobT</name>
        <name evidence="11" type="ORF">SAMN05444003_0109</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>5,6-dimethylbenzimidazole + nicotinate beta-D-ribonucleotide = alpha-ribazole 5'-phosphate + H(+) + nicotinate</text>
            <dbReference type="Rhea" id="RHEA:11196"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15890"/>
            <dbReference type="ChEBI" id="CHEBI:32544"/>
            <dbReference type="ChEBI" id="CHEBI:57502"/>
            <dbReference type="ChEBI" id="CHEBI:57918"/>
            <dbReference type="EC" id="2.4.2.21"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 10">Nucleoside biosynthesis; alpha-ribazole biosynthesis; alpha-ribazole from 5,6-dimethylbenzimidazole: step 1/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 10">Belongs to the CobT family.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.21" evidence="4 10"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60146.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898463.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0109"/>
    <dbReference type="EnsemblBacteria" id="SHG60146">
        <property type="protein sequence ID" value="SHG60146"/>
        <property type="gene ID" value="SAMN05444003_0109"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00061">
        <property type="reaction ID" value="UER00516"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008939">
        <property type="term" value="F:nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02439">
        <property type="entry name" value="DMB-PRT_CobT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1610.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10210">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00230">
        <property type="entry name" value="CobT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003200">
        <property type="entry name" value="Nict_dMeBzImd_PRibTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017846">
        <property type="entry name" value="Nict_dMeBzImd_PRibTrfase_bact"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023195">
        <property type="entry name" value="Nict_dMeBzImd_PRibTrfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036087">
        <property type="entry name" value="Nict_dMeBzImd_PRibTrfase_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02277">
        <property type="entry name" value="DBI_PRT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52733">
        <property type="entry name" value="SSF52733"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03160">
        <property type="entry name" value="cobT_DBIPRT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 10" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="7 10 11" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 10 11" id="KW-0808">Transferase</keyword>
    <feature type="active site" description="Proton acceptor" evidence="10">
        <location>
            <position position="306"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001058"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00015486"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00030686"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00230"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG60146.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="338" mass="33988" checksum="26FD5BF0BA53CBFD" modified="2017-03-15" version="1">MSAPFSTLAEFRAVLANAPGKNTEAQAGAEARNGQLTKPPGALGRLEDLAIWYASWRGTDRPEMKAPQVIIFAGNHGVCAQGVSAFPPEVTVQMVANFEHGGAAINQLSKAFGAKMDVHALDLDTPTADFTQAPAMTEEEVVAALQTGWNAVDPNADVLVTGEMGIGNTTSAAAVAAAVFGGEAGDWTGRGTGVDDAGLSRKTDVVARGLALHADAIKDPLQALRCLGGRELAAMAGAIAAARSCSIPVILDGFICSAAAASLHAAQDGALDHVVAGHLSAEGAHANILSNLGKDPLLSLGLRLGEGSGAALALGVLKGAIACHSGMATFAEAGVADG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L890</accession>
    <name>A0A1M5L890_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Creatinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0159</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61247.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900337.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0159"/>
    <dbReference type="EnsemblBacteria" id="SHG61247">
        <property type="protein sequence ID" value="SHG61247"/>
        <property type="gene ID" value="SAMN05444003_0159"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029149">
        <property type="entry name" value="Creatin/AminoP/Spt16_NTD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036005">
        <property type="entry name" value="Creatinase/aminopeptidase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000587">
        <property type="entry name" value="Creatinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000994">
        <property type="entry name" value="Pept_M24"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01321">
        <property type="entry name" value="Creatinase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00557">
        <property type="entry name" value="Peptidase_M24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53092">
        <property type="entry name" value="SSF53092"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55920">
        <property type="entry name" value="SSF55920"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Creatinase_N" evidence="2">
        <location>
            <begin position="26"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M24" evidence="1">
        <location>
            <begin position="165"/>
            <end position="381"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG61247.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="400" mass="44386" checksum="E6E987D401A9F915" modified="2017-03-15" version="1">MNRPQFHRFHQGEKCLPFSDAEYEARLAGLRQIMADQGVDACVMTSMHNIAYYSGFLYCAFGRPYAQVVTATETVTISAGIDAAQPWRRGFGDNITYTDWERNNYWRAIKTVTGEGRVVGFEGDHLSIVQMSLLNAFLAPKATKDIAPATMRQRMSKSAAEIDLIRAGANTADVGGFAIRDAIKAGAREIDVAMAGRDAMELEIARRFPDAEYRDTWVWFQSGINTDGAHNPVTSRKLERGDILSLNTFPMISGYYTALERTLFVETVDDASLKVWEANVAAHEYGMSLLKPGATCAEVTEQINAFFAERNLLQYRTFGYGHSFGVLSHYYGREAGLELREDIDTVLEPGMVISMEPMLTIPEGQPGAGGYREHDILIITEDGNENITGFPYGPEHNVVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L8K5</accession>
    <name>A0A1M5L8K5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase</fullName>
            <ecNumber evidence="7">6.3.2.13</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Meso-A2pm-adding enzyme</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Meso-diaminopimelate-adding enzyme</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">UDP-MurNAc-tripeptide synthetase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">UDP-N-acetylmuramyl-tripeptide synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">murE</name>
        <name evidence="12" type="ORF">SAMN05444003_0168</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>ATP + meso-2,6-diaminoheptanedioate + UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamate = ADP + H(+) + phosphate + UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptanedioate</text>
            <dbReference type="Rhea" id="RHEA:23676"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57791"/>
            <dbReference type="ChEBI" id="CHEBI:83900"/>
            <dbReference type="ChEBI" id="CHEBI:83905"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.13"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="7 8">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7 8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="PTM">
        <text evidence="7">Carboxylation is probably crucial for Mg(2+) binding and, consequently, for the gamma-phosphate positioning of ATP.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the MurCDEF family. MurE subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.13" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61454.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898534.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0168"/>
    <dbReference type="EnsemblBacteria" id="SHG61454">
        <property type="protein sequence ID" value="SHG61454"/>
        <property type="gene ID" value="SAMN05444003_0168"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008765">
        <property type="term" value="F:UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00208">
        <property type="entry name" value="MurE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036565">
        <property type="entry name" value="Mur-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004101">
        <property type="entry name" value="Mur_ligase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036615">
        <property type="entry name" value="Mur_ligase_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013221">
        <property type="entry name" value="Mur_ligase_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000713">
        <property type="entry name" value="Mur_ligase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035911">
        <property type="entry name" value="MurE/MurF_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005761">
        <property type="entry name" value="UDP-N-AcMur-Glu-dNH2Pim_ligase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01225">
        <property type="entry name" value="Mur_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02875">
        <property type="entry name" value="Mur_ligase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08245">
        <property type="entry name" value="Mur_ligase_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53244">
        <property type="entry name" value="SSF53244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53623">
        <property type="entry name" value="SSF53623"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63418">
        <property type="entry name" value="SSF63418"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01085">
        <property type="entry name" value="murE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7 8" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="2 7 8" id="KW-0132">Cell division</keyword>
    <keyword evidence="3 7 8" id="KW-0133">Cell shape</keyword>
    <keyword evidence="6 7 8" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 12" id="KW-0436">Ligase</keyword>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 7 8" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mur_ligase" evidence="9">
        <location>
            <begin position="22"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="domain" description="Mur_ligase_M" evidence="11">
        <location>
            <begin position="112"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="domain" description="Mur_ligase_C" evidence="10">
        <location>
            <begin position="335"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="region of interest" description="UDP-MurNAc-L-Ala-D-Glu binding" evidence="7">
        <location>
            <begin position="155"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="region of interest" description="Meso-diaminopimelate binding" evidence="7">
        <location>
            <begin position="411"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Meso-diaminopimelate recognition motif" evidence="7">
        <location>
            <begin position="411"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="29"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamate</name>
            <dbReference type="ChEBI" id="CHEBI:83900"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="114"/>
            <end position="120"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="182"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamate</name>
            <dbReference type="ChEBI" id="CHEBI:83900"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="188"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamate</name>
            <dbReference type="ChEBI" id="CHEBI:83900"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="190"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamate</name>
            <dbReference type="ChEBI" id="CHEBI:83900"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="387"/>
        </location>
        <ligand>
            <name>meso-2,6-diaminoheptanedioate</name>
            <dbReference type="ChEBI" id="CHEBI:57791"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="465"/>
        </location>
        <ligand>
            <name>meso-2,6-diaminoheptanedioate</name>
            <dbReference type="ChEBI" id="CHEBI:57791"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="469"/>
        </location>
        <ligand>
            <name>meso-2,6-diaminoheptanedioate</name>
            <dbReference type="ChEBI" id="CHEBI:57791"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-carboxylysine" evidence="7">
        <location>
            <position position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00208"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004135"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02875"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF08245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG61454.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="498" mass="51680" checksum="B60BDC79087C0CD0" modified="2017-03-15" version="1">MAKSSSLAALGLTAQGGREATITDITVDSRDAGQGTLFAALPGSNVHGASFIGKALAAGASAILTDAEGAEIAAEDLAASDAALIVAQDPRQTLAQTASLWFGAHPATVVAVTGTNGKTSVSTFTRQIWEALGIAGVNLGTTGVEGSWSHPLRHTTPEPITLHRVLAEASANAITHVAMEASSHGLDQCRLDGVHLTAAGFTNFTQDHLDYHETFDAYFDAKMGLFTRVLSPEGVAVVNLDDPKGKEVAKICEERGQEVIGVGASEDARLRLSARRFDATGQDLRFTWQGKPFQTRLDLMGGFQADNVLLAAGLVIAAGAAPSDVFETLDTLTTVRGRMELAATRDNGAAVFVDYAHTPDAVSTALQAMRPHVMGKIVVIVGAGGDRDTTKRPLMGAAAAEHADVVIITDDNPRSEDPAAIRAAVMAGAVQAGEADQIIEVGDRAEAILRGIDMLEVGDALLIAGKGHESGQIVGDSVLPFDDVEQASVAVAALEGRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L917</accession>
    <name>A0A1M5L917_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">N-methylglutamate dehydrogenase subunit C</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_0143</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GcvT family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60913.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898500.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0143"/>
    <dbReference type="EnsemblBacteria" id="SHG60913">
        <property type="protein sequence ID" value="SHG60913"/>
        <property type="gene ID" value="SAMN05444003_0143"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008115">
        <property type="term" value="F:sarcosine oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046653">
        <property type="term" value="P:tetrahydrofolate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.440">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042204">
        <property type="entry name" value="2Fe-2S-bd_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028896">
        <property type="entry name" value="GCST/YgfZ/DmdA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013977">
        <property type="entry name" value="GCV_T_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006222">
        <property type="entry name" value="GCV_T_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029043">
        <property type="entry name" value="GcvT/YgfZ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006277">
        <property type="entry name" value="Sarcosine_oxidase_asu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041117">
        <property type="entry name" value="SoxA_A3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027266">
        <property type="entry name" value="TrmE/GcvT_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43757">
        <property type="entry name" value="PTHR43757"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01571">
        <property type="entry name" value="GCV_T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08669">
        <property type="entry name" value="GCV_T_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17806">
        <property type="entry name" value="SO_alpha_A3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037980">
        <property type="entry name" value="SoxA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101790">
        <property type="entry name" value="SSF101790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01372">
        <property type="entry name" value="soxA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SO_alpha_A3" evidence="5">
        <location>
            <begin position="499"/>
            <end position="583"/>
        </location>
    </feature>
    <feature type="domain" description="GCV_T" evidence="3">
        <location>
            <begin position="599"/>
            <end position="865"/>
        </location>
    </feature>
    <feature type="domain" description="GCV_T_C" evidence="4">
        <location>
            <begin position="893"/>
            <end position="977"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF08669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF17806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG60913.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="985" mass="106449" checksum="9A3826C71AF8566F" modified="2017-03-15" version="1">MTQQNRISGGQIDTSQTLKFTFDGKQYTGHPGDTLASALLANGVRLMGRSFKYHRPRGVLSAGSEEPNALVELRGGARQEPNTRATTVELYNGLLANSQNRLGSLKFDLLAINDRLSNFLTAGFYYKTFMWPAAFWEKLYEPIIRKAAGLGSLSLKEDPDVYDKGFLHCDVLIIGAGPAGLAAALTAGRSGASVILADEDFRMGGRLNSETFTIGDASGADWAAATVAELASLPNVRLMSRTTVIGAFDHGIYGAVERNNDHVATPDEGKPRQTLWRIYSKQAVVCAGALERPIGFENNDRPGIMLASAMRSYANRWAVAADKRVAIFTNNDDGHRAAADLHAKGVKISAVVDTRADAPRNNDYEVLVGAQVIDTKGRLGLTFADVRLADGSERTLECGALGMSGGWNPNVHMTCHQRGRPVWNDDLAAFVPGADLPAGMTVAGAANGDFSTAGAMASGVIGAKSALKAIGLKAKTTKLPQAEDAPINISAFWYVKEGKGRAWLDQQNDVTVKDVKLSHQEGFRSVEHLKRYTTLGMATDQGKTSNMGGLAIMAELAGKTIPEVGTTIFRPPYTPTAIGVLAGRARGQEFHPKRLTPSHHWAKEQGAVFVEVGNWLRAQWFPQKGETHWRQSVDREVIATRKSVGVCDVTTLGKIDVQGADAAEFLNKIYCNGFAKLAVGKTRYGLMLREDGIAMDDGTAARMAEDHFVVTTTTANALGVYRHMEFVRQCLFPDMDVQLISTTEAWAQFAVAGPNSRRLLQKIVDPEYDISNEAFPFMACGNITICGGLRARLFRISFSGELAYEIAVPTRYGDALMRRIMEEGAEFDVVPYGTEALGVMRIEKGHATGNELNGTTTALNLGMGRMVSKKKDSIGSILSEREGLNTDDVLMQVGIKPVDPSKPVPAGAHLMNLTGPVDADHDQGYVTSACYSPILGHHIALGFVKGGGNRKGEKMRLVSPLTKVETEIEIVSAHFVDPEGERLRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LBU9</accession>
    <name>A0A1M5LBU9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, ArsR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0210</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62498.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898596.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG62498">
        <property type="protein sequence ID" value="SHG62498"/>
        <property type="gene ID" value="SAMN05444003_0210"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001845">
        <property type="entry name" value="HTH_ArsR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00778">
        <property type="entry name" value="HTHARSR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00418">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50987">
        <property type="entry name" value="HTH_ARSR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH arsR-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG62498.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="103" mass="10987" checksum="32785F49ADB9404F" modified="2017-03-15" version="1">MSYEDAIAALADPSRRAIVESLRTGARPVGEIADGLPISRPAVSQHLRVLTDAGLLTCASSGTKRLYAISPEGVDALRRYLDSLWGDALACFSEAAQSKKEQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LBV0</accession>
    <name>A0A1M5LBV0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">ATP-dependent Clp protease ATP-binding subunit ClpX</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">clpX</name>
        <name evidence="9" type="ORF">SAMN05444003_0212</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Component of the ClpX-ClpP complex. Forms a hexameric ring that, in the presence of ATP, binds to fourteen ClpP subunits assembled into a disk-like structure with a central cavity, resembling the structure of eukaryotic proteasomes.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6 7">Belongs to the ClpX chaperone family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62562.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898598.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0212"/>
    <dbReference type="EnsemblBacteria" id="SHG62562">
        <property type="protein sequence ID" value="SHG62562"/>
        <property type="gene ID" value="SAMN05444003_0212"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.20.220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00175">
        <property type="entry name" value="ClpX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019489">
        <property type="entry name" value="Clp_ATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004487">
        <property type="entry name" value="Clp_protease_ATP-bd_su_ClpX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046425">
        <property type="entry name" value="ClpX_bact"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010603">
        <property type="entry name" value="Znf_CppX_C4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038366">
        <property type="entry name" value="Znf_CppX_C4_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07724">
        <property type="entry name" value="AAA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10431">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06689">
        <property type="entry name" value="zf-C4_ClpX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01086">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00994">
        <property type="entry name" value="zf-C4_ClpX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00382">
        <property type="entry name" value="clpX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51902">
        <property type="entry name" value="CLPX_ZB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 6 7" id="KW-0143">Chaperone</keyword>
    <keyword evidence="9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 6 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6 7" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="ClpX-type ZB" evidence="8">
        <location>
            <begin position="3"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="15"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="18"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="37"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="40"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="118"/>
            <end position="125"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01250"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG62562.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="421" mass="45875" checksum="F3A65B3750CE829B" modified="2017-03-15" version="1">MANNSGKDSKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREETKSAGLKAGEGVPTPTEICGVLDDYVIGQMHAKRVLSVAVHNHYKRLNHSEKSDIELAKSNIMLIGPTGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIIGQRGKGSAMGFGADVREEDDRGIGEIFTDLEPEDLLKFGLIPEFVGRLPVIATLTDLDEDALVTILTQPKNALVKQYQRLFELEDTKLTFTDDALRAIAGRAIERKTGARGLRSILEDILLDTMFDLPGMDSVSEVVVNEEAVTSDTAPLMIHDDTKTKESATAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LDF0</accession>
    <name>A0A1M5LDF0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0231</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63047.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898641.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0231"/>
    <dbReference type="EnsemblBacteria" id="SHG63047">
        <property type="protein sequence ID" value="SHG63047"/>
        <property type="gene ID" value="SAMN05444003_0231"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="41"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="79"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="108"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG63047.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="143" mass="14605" checksum="72ABDE7096984AB5" modified="2017-03-15" version="1">MRSLVAFLVGGLFGAGLLISGMTDTRKVQGWLDIFGDWDPTLAFVMGGAIIPMAIAWQLTKGRTALIGGAFTALSDPQVDRRIVIGSVLFGAGWGLSGPCPGPAIASLSFGGLSGLVFATAMIGGMAMAPTANRYLDGSPQTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LF87</accession>
    <name>A0A1M5LF87_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="17">Assimilatory nitrite reductase (NAD(P)H) large subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">SAMN05444003_0244</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 11">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2">Nitrogen metabolism; nitrate reduction (assimilation).</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63359.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898661.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0244"/>
    <dbReference type="EnsemblBacteria" id="SHG63359">
        <property type="protein sequence ID" value="SHG63359"/>
        <property type="gene ID" value="SAMN05444003_0244"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00653"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008942">
        <property type="term" value="F:nitrite reductase [NAD(P)H] activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042128">
        <property type="term" value="P:nitrate assimilation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.1100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.413.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007419">
        <property type="entry name" value="BFD-like_2Fe2S-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041854">
        <property type="entry name" value="BFD-like_2Fe2S-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016156">
        <property type="entry name" value="FAD/NAD-linked_Rdtase_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005117">
        <property type="entry name" value="NiRdtase/SiRdtase_haem-b_fer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036136">
        <property type="entry name" value="Nit/Sulf_reduc_fer-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012744">
        <property type="entry name" value="Nitri_red_NirB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017121">
        <property type="entry name" value="Nitrite_Rdtase_lsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006067">
        <property type="entry name" value="NO2/SO3_Rdtase_4Fe4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045854">
        <property type="entry name" value="NO2/SO3_Rdtase_4Fe4S_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006066">
        <property type="entry name" value="NO2/SO3_Rdtase_FeS/sirohaem_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041575">
        <property type="entry name" value="Rubredoxin_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04324">
        <property type="entry name" value="Fer2_BFD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01077">
        <property type="entry name" value="NIR_SIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03460">
        <property type="entry name" value="NIR_SIR_ferr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18267">
        <property type="entry name" value="Rubredoxin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037149">
        <property type="entry name" value="NirB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00397">
        <property type="entry name" value="SIROHAEM"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55124">
        <property type="entry name" value="SSF55124"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56014">
        <property type="entry name" value="SSF56014"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02374">
        <property type="entry name" value="nitri_red_nirB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00365">
        <property type="entry name" value="NIR_SIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="6 11" id="KW-0274">FAD</keyword>
    <keyword evidence="5 11" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="4" id="KW-0349">Heme</keyword>
    <keyword evidence="8" id="KW-0408">Iron</keyword>
    <keyword evidence="9" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10 11" id="KW-0534">Nitrate assimilation</keyword>
    <keyword evidence="7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="15">
        <location>
            <begin position="4"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="domain" description="Rubredoxin_C" evidence="16">
        <location>
            <begin position="314"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="domain" description="Fer2_BFD" evidence="14">
        <location>
            <begin position="418"/>
            <end position="465"/>
        </location>
    </feature>
    <feature type="domain" description="Fer2_BFD" evidence="14">
        <location>
            <begin position="480"/>
            <end position="529"/>
        </location>
    </feature>
    <feature type="domain" description="NIR_SIR_ferr" evidence="13">
        <location>
            <begin position="555"/>
            <end position="619"/>
        </location>
    </feature>
    <feature type="domain" description="NIR_SIR" evidence="12">
        <location>
            <begin position="629"/>
            <end position="762"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005096"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRNR" id="PIRNR037149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF01077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF03460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF04324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF18267"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="SHG63359.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="811" mass="87765" checksum="2166BE6F50DC6244" modified="2017-03-15" version="1">MTKKLIVIGAGMASGRALEHLFDTGGDYDVTLFNAEPRGNYNRIMLSPVLAGEQTYEEIVTHDDAWYAEHNVTCRFGEKIANIDRNAKTVTADNGDVLSYDKLLFGTGSNPFMIPLPGHDLKGVIAYRDLEDTERMMAMGPDNKVVVIGGGLLGLEAAAGMAARGVDVTVVHIMGHLMERQLDEAAGYLLRKALVDKGITVKCSANSKEILGENGHVKALMLDDGTELPCDLLVMAVGIRPNVALAQEAGLAVGKGIHVDDQMVTSDENILAVGECVEHNGAIFGLVAPLYDQAKVVAKTLTGEEDTFVQKELSTKLKVTGCDLFSAGDFADGEGREDIVFRDPARGVYRRLVIENDVVIGAVMYGDTADSNWFFGLIKDKTDISEMRDTLIFGPAYQGGEPPDPLAAVAALPLDAEICGCNGICKGTIVEAINAGATDLGAIKATTKASASCGTCTGLVEQVLASTLGDAFVMPTAQPMCGCTDMTHEDVRRMIKSQKLTSMQAVMQECGWKTSCGCHVCRPALNFYLLADWPLEYQDDPQSRFINERKHANIQKDGTFSVVPRMWGGITTPNELRAIADAADKYMVPTVKVTGGQRIDLLGVKSEDLPNIWADLNAAGMVSGHAYSKGLRTVKTCVGTDHCRFGTQDSTGLGIKLERELWGSWTPHKLKLAVSGCPRNCAEATCKDIGVICVDSGYQVSIGGAAGMDVKETELLVQVPTEDEAVLVIKAVTQLYRENAKYLDRIYKWMGKVGLDWIKERIVDDIDERAALVDRFELSQAIYRKDPWAEHASTKADSYRPLANLSLEAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LFP6</accession>
    <name>A0A1M5LFP6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative lipoprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0270</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63944.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898702.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0270"/>
    <dbReference type="EnsemblBacteria" id="SHG63944">
        <property type="protein sequence ID" value="SHG63944"/>
        <property type="gene ID" value="SAMN05444003_0270"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.128.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005184">
        <property type="entry name" value="DUF306_Meta_HslJ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038670">
        <property type="entry name" value="HslJ-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039366">
        <property type="entry name" value="Pilotin"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03724">
        <property type="entry name" value="META"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09619">
        <property type="entry name" value="YscW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012770574" evidence="1">
        <location>
            <begin position="24"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="domain" description="META" evidence="2">
        <location>
            <begin position="142"/>
            <end position="249"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG63944.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="253" mass="27712" checksum="1A707583521E85FA" modified="2017-03-15" version="1">MFRTKMLAAIGGAFLATASMAVADIFHLEATISYRERILLPEEAVLEVELLDTSRADAPSIRMASQRFRLGGVPRRVEIAYDSDLIDDRHTYTVAAKILLGDEVLFRSTTAYMVLTRGAPDKTEIVLEAMPVQADMGDADDQSIYGETWTIYEVTGRLLVTEDLPVMMIDEEGNFGLYAGCNNFAGSLTAEDGVLTMPAAFAGTKKLCEEGKMTLEQDIIDALSVSTGYVRNDQILAFTNDAGVTVLRMQITE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LH50</accession>
    <name>A0A1M5LH50_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0259</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63693.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898684.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG63693">
        <property type="protein sequence ID" value="SHG63693"/>
        <property type="gene ID" value="SAMN05444003_0259"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="46"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="76"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="100"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG63693.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="128" mass="13325" checksum="185A6526171AF467" modified="2017-03-15" version="1">MRGAGGSEGGTLTFFIGLAMMIAGGYLLLSNIVIRPVFGFRTAAFNIGGFGITTGMILIPFIFGVGLVFYNSSSKFGWGLAIGSVIALVAGVIANLNIQFAALSIFDLLVILILLFGGLGLFLRSLRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LL82</accession>
    <name>A0A1M5LL82_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">N-acetylmuramoyl-L-alanine amidase</fullName>
            <ecNumber evidence="2">3.5.1.28</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_0341</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Hydrolyzes the link between N-acetylmuramoyl residues and L-amino acid residues in certain cell-wall glycopeptides.</text>
            <dbReference type="EC" id="3.5.1.28"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="3.5.1.28" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0341"/>
    <dbReference type="EnsemblBacteria" id="SHG65439">
        <property type="protein sequence ID" value="SHG65439"/>
        <property type="gene ID" value="SAMN05444003_0341"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008745">
        <property type="term" value="F:N-acetylmuramoyl-L-alanine amidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009253">
        <property type="term" value="P:peptidoglycan catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02696">
        <property type="entry name" value="MurNAc-LAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021731">
        <property type="entry name" value="AMIN_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002508">
        <property type="entry name" value="MurNAc-LAA_cat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01520">
        <property type="entry name" value="Amidase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11741">
        <property type="entry name" value="AMIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00646">
        <property type="entry name" value="Ami_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013268508" description="N-acetylmuramoyl-L-alanine amidase" evidence="4">
        <location>
            <begin position="18"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="domain" description="MurNAc-LAA" evidence="5">
        <location>
            <begin position="231"/>
            <end position="386"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011901"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00646"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG65439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="395" mass="42768" checksum="CDA3D1D7731F3E0E" modified="2017-03-15" version="1">MIRAVLFWLLMSSAAVAQSFTGLARVDPTESRVVDTAGGIDLTLALSQIVPYRVFTLEAPERLVLDFREVNWGDLDTLDFDQAKHVTNVSFGQLRPGWSRMVLELSEPMFLNLASATVEDTDATAVVEISLQRTDAETFAGLSGAPVDPQWGDLFAAPTLQAPNYDDDTLVVVVDPGHGGIDPGAEHGGVTEADLMLTLGIEVAEALNRLDGVEAILTRVSDVFVPLNTRMTIARQNNADLLISLHADALEAGQARGGSVYTLSDKAASVAARRMAERHQRGDLIAGLDLTEQDDRVASVLMDLARAKTGPEGVRFAEVLVANLMENDVRLHRNSLRQGPLAVLNAADFASVLFEVGYLSNDRDRSILLNEDTRKPIVDALAQAVSDWLAMRGLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LLQ2</accession>
    <name>A0A1M5LLQ2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0348</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0348"/>
    <dbReference type="EnsemblBacteria" id="SHG65579">
        <property type="protein sequence ID" value="SHG65579"/>
        <property type="gene ID" value="SAMN05444003_0348"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.70.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045974">
        <property type="entry name" value="DUF5930"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011055">
        <property type="entry name" value="Dup_hybrid_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016047">
        <property type="entry name" value="Peptidase_M23"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19353">
        <property type="entry name" value="DUF5930"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01551">
        <property type="entry name" value="Peptidase_M23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51261">
        <property type="entry name" value="SSF51261"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="52"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="domain" description="DUF5930" evidence="4">
        <location>
            <begin position="13"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M23" evidence="3">
        <location>
            <begin position="340"/>
            <end position="434"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="83"/>
            <end position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF19353"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG65579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="445" mass="49134" checksum="2A02D93579831608" modified="2017-03-15" version="1">MRGMDGARNDNVKSRIAHRIHAKLEKHFPEKRLFLRSDTETRFIRLKPETQLVAWAGGAAVVAWTIVATAILLMDSIGSGNFRAQAQRDQLIYEQRLNALSDERDARAEEAIAAQQRFSSALSQISMMQTELLRTEERRRELETALDAVQGTLRDTMQEREVARSELAEITENGGAAAVASSQEGDGTVDLLATALAETAAERDMIASDAEYAINHAAELELELRLMEDKNDEIFRQLEEAMLVSVEPLDQMFRSAGLNPDSLLSAVRRGYSGQGGPLAPLQFSTSGGTIDPDAARANSILDRMDRINMYRIAAERAPFDIPVKSNFRYTSGFGPRWGRMHAGTDFAAPVGTPIYATADGVVTHASWSSGYGRLIKIQHDFGIETRYAHLNRIRVNVGERVSRGERIGDMGNSGRSTGPHLHYEVRVGGNAVNPMTYIRAGQNVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LML0</accession>
    <name>A0A1M5LML0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0362</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898827.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0362"/>
    <dbReference type="EnsemblBacteria" id="SHG65889">
        <property type="protein sequence ID" value="SHG65889"/>
        <property type="gene ID" value="SAMN05444003_0362"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008912">
        <property type="entry name" value="Uncharacterised_CoxE"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05762">
        <property type="entry name" value="VWA_CoxE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG65889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="395" mass="45515" checksum="95BE3C3AD896447F" modified="2017-03-15" version="1">MFLPFFDNLRRAKVPVSLREFLSFLEAMKAGLATYDIEAFYFLARAIMVKDERHIDRFDQAFAATFSGLEEISAADVLNAVDIPEEWLRKMTEKHLSEEEKAEIEALGGFDKLMETLKERLKEQEGRHQGGNKWIGTGGTSPFGAYGYNPEGVRIGQKESRHQRAVKVWDKREFRNLDGDVELGTRNIKVALKRLRRWARDGAEEELDLPGTIQSTAEHGYIDVKTRPERRNAVKVLLFLDIGGSMDAHVKIVEELFSAAKAEFKHMEHFYFHNCLYEGVWKDNRRRWDQQTPTWDVLRTYGPDYKCIFVGDASMSPYEIAFAGGANEHWNKEAGHVWLERARDQWAGHLWINPVPEKYWGYTQSIGMIQEVFGADRMVPMTLSGIETGMKVLVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LRI8</accession>
    <name>A0A1M5LRI8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phytoene synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0421</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898907.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0421"/>
    <dbReference type="EnsemblBacteria" id="SHG67249">
        <property type="protein sequence ID" value="SHG67249"/>
        <property type="gene ID" value="SAMN05444003_0421"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.600.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008949">
        <property type="entry name" value="Isoprenoid_synthase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002060">
        <property type="entry name" value="Squ/phyt_synthse"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00494">
        <property type="entry name" value="SQS_PSY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48576">
        <property type="entry name" value="SSF48576"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG67249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="255" mass="28391" checksum="26612BA1ABD24D2A" modified="2017-03-15" version="1">MSFEACAAIVERGDTDRFRAAMAAPVEARKILFPLYAFNVEVTRAPWVTQEHMIAEMRLQWWRDALEEIRQGGPVRKHEVVDELAKILDKEACETLDALIAARRWDIYSDPFEDEAHLDDYIHATSSNLMQVAAQALGAADVKTIRYVGYASGLANLFRAIPALEQAGRKPLVDGRPIAIRTLAERGAECLKRARSTKHAVSKAASPALIAAFRAKPTLEQIIKDPNLVASVALEPSPAKDSLRFANVTMRGWWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LZW3</accession>
    <name>A0A1M5LZW3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 10">Shikimate kinase</fullName>
            <shortName evidence="10">SK</shortName>
            <ecNumber evidence="3 10">2.7.1.71</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">aroK</name>
        <name evidence="11" type="ORF">SAMN05444003_0570</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>ATP + shikimate = 3-phosphoshikimate + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13121"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:36208"/>
            <dbReference type="ChEBI" id="CHEBI:145989"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.71"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="10">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 10">Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 5/7.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the shikimate kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.71" evidence="3 10"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70561.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900381.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0570"/>
    <dbReference type="EnsemblBacteria" id="SHG70561">
        <property type="protein sequence ID" value="SHG70561"/>
        <property type="gene ID" value="SAMN05444003_0570"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00053">
        <property type="reaction ID" value="UER00088"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004765">
        <property type="term" value="F:shikimate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009073">
        <property type="term" value="P:aromatic amino acid family biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008652">
        <property type="term" value="P:cellular amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009423">
        <property type="term" value="P:chorismate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00464">
        <property type="entry name" value="SK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00109">
        <property type="entry name" value="Shikimate_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031322">
        <property type="entry name" value="Shikimate/glucono_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000623">
        <property type="entry name" value="Shikimate_kinase/TSH1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023000">
        <property type="entry name" value="Shikimate_kinase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01202">
        <property type="entry name" value="SKI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01128">
        <property type="entry name" value="SHIKIMATE_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 10" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9 10" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="8 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 10 11" id="KW-0418">Kinase</keyword>
    <keyword evidence="10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 10" id="KW-0808">Transferase</keyword>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="24"/>
            <end position="29"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="28"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="46"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="70"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="92"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="130"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="149"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG70561.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="190" mass="21010" checksum="A1EC5C3FDDCD7F05" modified="2017-03-15" version="1">MNSDHAISSAYRLKRSVVLVGMMGSGKSAIGRALSEKLCVPFLDSDAAIEAAANATIAEIFARDGEAFFRERETEVIARLLSGEPCILSTGGGAFLAERNRALIDEKGASVWLDADLKLLWERVRHKDTRPLLRTDNPFQTLSDIFDVRQPIYQLAQLRVDVQPGASIDETTQRTIEVLLSEDHILELIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M1D8</accession>
    <name>A0A1M5M1D8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Long-chain fatty acid transport protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_0593</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell outer membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the OmpP1/FadL family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG71066.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899148.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG71066">
        <property type="protein sequence ID" value="SHG71066"/>
        <property type="gene ID" value="SAMN05444003_0593"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005017">
        <property type="entry name" value="OMPP1/FadL/TodX"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35093">
        <property type="entry name" value="PTHR35093"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03349">
        <property type="entry name" value="Toluene_X"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0732">Signal</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <feature type="signal peptide" evidence="8">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5011957306" evidence="8">
        <location>
            <begin position="21"/>
            <end position="400"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG71066.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="400" mass="41395" checksum="080F0EB2471F5059" modified="2017-03-15" version="1">MKNYLSTGAALLLTATAASAGGLDRGGNSYSVLFENGNYAELSFSIAQPEVSGDYPAGLGGGSTGKMSEDFNTFGVALKFAINDQIDLGLFLNQPFGADASYGTGPYTGLEAEWDSNQIAIVGKYQVNPNVSVYGGLRVVKSEANISIPDTLNRGSAAQALGDGIAQAIAAGAPPAVISDLEGQLAAVQGAPAGAFGYSATAAANSQVGYVIGAAYEKPEIALRVSLTYESGLTHDFDTLEVFQGVTTEATTDIKLPQSLTLDFQTGVAEDTLVFGSIRWAEWSVWDVRPPAFEAFSGGAVTSLDNDTITYRLGVGRRINDDLSLFARVTYEEASGGVASRLSPTDGTTSIGIGGTYNLDGVSLRGGIEYSMLGDATDGSGVEFEENTALGLGLSVGYSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M261</accession>
    <name>A0A1M5M261_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">2-methylcitrate dehydratase PrpD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0605</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PrpD family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG71387.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899159.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0605"/>
    <dbReference type="EnsemblBacteria" id="SHG71387">
        <property type="protein sequence ID" value="SHG71387"/>
        <property type="gene ID" value="SAMN05444003_0605"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.4100.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036148">
        <property type="entry name" value="MmgE/PrpD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042183">
        <property type="entry name" value="MmgE/PrpD_sf_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042188">
        <property type="entry name" value="MmgE/PrpD_sf_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005656">
        <property type="entry name" value="MmgE_PrpD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045337">
        <property type="entry name" value="MmgE_PrpD_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045336">
        <property type="entry name" value="MmgE_PrpD_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16943">
        <property type="entry name" value="PTHR16943"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03972">
        <property type="entry name" value="MmgE_PrpD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19305">
        <property type="entry name" value="MmgE_PrpD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103378">
        <property type="entry name" value="SSF103378"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MmgE_PrpD" evidence="2">
        <location>
            <begin position="10"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="domain" description="MmgE_PrpD_C" evidence="3">
        <location>
            <begin position="256"/>
            <end position="409"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03972"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF19305"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG71387.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="427" mass="45421" checksum="F1CB6DF4207ACDA0" modified="2017-03-15" version="1">MTVEQTLVRFALSDLKAPPRDLARLCLFDWAVCGIAGIPEPVSNNLRDKAISEGGRAHATLIGGGKVPAPQAALVNGATSHALDYDDTHFAHIGHTSVVVISSALAVAEMKDASFDELLDAIAVGSEAATRVGEWLGRRHYQIGFHQTATSGAFGATLAACRLLKLSEGETIIALGLCASRASGLKAQFGTMAKPLNAGIAAEAGVQAALWAHAGITASLEALSAFAATHLGENNDDAMDGLGEEWQFSGISHKFHACCHGLHAMLEALSMIECKTDEIRKIEVCANPRWMSVCNIAQPETGLEAKFSYRFTAAMALSGVDTASIESYACETLKNQELQRLSECVSVLEDAGISETASRTTIHLAGGEMIEASHDLLSPLTIEMRADKLQRKATSILGVRHKQRLWDLAQGDDLKDFVSLLSDQGVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M683</accession>
    <name>A0A1M5M683_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">NTE family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0660</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72776.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899250.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0660"/>
    <dbReference type="EnsemblBacteria" id="SHG72776">
        <property type="protein sequence ID" value="SHG72776"/>
        <property type="gene ID" value="SAMN05444003_0660"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016042">
        <property type="term" value="P:lipid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016035">
        <property type="entry name" value="Acyl_Trfase/lysoPLipase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002641">
        <property type="entry name" value="PNPLA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01734">
        <property type="entry name" value="Patatin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52151">
        <property type="entry name" value="SSF52151"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51635">
        <property type="entry name" value="PNPLA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0442">Lipid degradation</keyword>
    <keyword evidence="1 2" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PNPLA" evidence="3">
        <location>
            <begin position="7"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="GXGXXG" evidence="2">
        <location>
            <begin position="11"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="GXSXG" evidence="2">
        <location>
            <begin position="39"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="DGA/G" evidence="2">
        <location>
            <begin position="201"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="2">
        <location>
            <position position="41"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="201"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51635"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG72776.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="344" mass="37193" checksum="531CF6CE322CAB37" modified="2017-03-15" version="1">MTKRINLALQGGGAHGAFTWGVLNVLLQDEGIEIAALSGTSAGALNGAAVKSGLVAGGRDGAVENLRWLWSQIGAVTEPEFAPWMSALSSSAAYWAKALEFSPAYAAFDFTTRMTSPYVYGPLMQNPLGRIVGDFHFDEVCAPDGPQLWICATNVRSGKIKLFSGKDIGPKAIMASACLPSLFQAVEIEDSETGKLEAYWDGGYTGNPALYPLFHPDLPDDILVVNINPLYREELPTNSQAIQNRINEISFNSSLLRELRAISFVKRLLADGTMGRGSMKDVLVHMISDDELMNALNVATKTIPTPVILDRLRLAGEVAAKAFLSAHRDDLNERGTVDLEAMFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M8H2</accession>
    <name>A0A1M5M8H2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">VPLPA-CTERM protein sorting domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0697</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73624.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG73624">
        <property type="protein sequence ID" value="SHG73624"/>
        <property type="gene ID" value="SAMN05444003_0697"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022472">
        <property type="entry name" value="VPLPA-CTERM"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03370">
        <property type="entry name" value="VPLPA-CTERM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012047780" evidence="1">
        <location>
            <begin position="24"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG73624.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="198" mass="19899" checksum="BDA108B76D341162" modified="2017-03-15" version="1">MNIKHLLISSAIAIPLAATSATASTVSFDVDGPGSEAFISGQLSAGAAIFAEPSADLDNEIFDLGVGDSYSFDFIDFSIVDVESFIGGGLFAVEATLAFEAPGGSVSDSGFGGFGTFAGFLSGGVLEWTTGTQQVSLDDGTVFTVELEEGSVFGFGNSATAQATVTLDVAPVPLPASSLLLLAGLSGLGIAARRKRAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MBH4</accession>
    <name>A0A1M5MBH4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0742</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74657.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899397.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG74657">
        <property type="protein sequence ID" value="SHG74657"/>
        <property type="gene ID" value="SAMN05444003_0742"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041586">
        <property type="entry name" value="PsrA_TetR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17939">
        <property type="entry name" value="TetR_C_30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="20"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="43"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG74657.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="214" mass="23333" checksum="9F7B543B897E827C" modified="2017-03-15" version="1">MSNSQATGKIRKRALSERAKQTRERVFDAAETIFATRGFDGATIRDIAAAAGEPVGTIHHHGGGKEALFNTVVARRAETLSQARLAALEAAGASKPMDLRSVLSAFIRPLFDLVEEDPRWQNYAKLVAFVSVDDRWTEIAAQHFDPTAQKFMEELQCLLPKLSRQRIAEGFVFTVSAMLALVTSERRISALGEGTSHTASVDHLVTFCAAGFGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MC67</accession>
    <name>A0A1M5MC67_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Putative spermidine/putrescine transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0755</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74900.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899414.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0755"/>
    <dbReference type="EnsemblBacteria" id="SHG74900">
        <property type="protein sequence ID" value="SHG74900"/>
        <property type="gene ID" value="SAMN05444003_0755"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="37"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="64"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="87"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="125"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="192"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="223"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="267"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="319"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="365"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="188"/>
            <end position="387"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG74900.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="403" mass="43944" checksum="39209224C66BEB88" modified="2017-03-15" version="1">MAALTPVERAPLSFVVPVVALAGAILGLFVGTANGSGLMGILIGAALLAVVSWAMIVVIKNERVARWGLVIAFAILGFVLGSVPGGLIGLISGWFFGWFTFWLFESRYRMRLLPYLTPRQVLWHYAFRVICGAIFVFLITPILVVIPLSFNAQDFFTFTPEMLRFDPEGYSLKHYEDFFTNNEWQRSFKNSLLIAPIATIISVTLGTLAAIGLSQAHVPGKRAIMAILISPMIVPLIISATGMFFFYSNIGNFLEGTLGMNKTFVGYVKVILAHAVLGVPFVIITVTATLVGFDRSLTRAAANMGADPVKTFFKIQMPLILPGVIAGGLFAFITSFDEVVVVLFVGSASQKTLPWQMFTGLREQISPTILAVATILVVISIALLTTLELLRRRSERLRGMSPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MC98</accession>
    <name>A0A1M5MC98_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Putative spermidine/putrescine transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0756</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899415.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0756"/>
    <dbReference type="EnsemblBacteria" id="SHG74930">
        <property type="protein sequence ID" value="SHG74930"/>
        <property type="gene ID" value="SAMN05444003_0756"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="33"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="206"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="235"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="291"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="344"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="388"/>
            <end position="411"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="203"/>
            <end position="411"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG74930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="424" mass="47030" checksum="56E2E483A94B1ADF" modified="2017-03-15" version="1">MSDTAQDGPMLAADGTTLKQSLARSLRREKMRALLLIAPLLIFIFLSFVVPIVSMLFRSIENSILQDTLPETVVALENWDDQSGELPDEEVYAAFVRDMLVAVDAKTHTRLGTRLNYEETGMSSMFRRSGRQISRLDPVEDAPFKDKLIDIHDGWGDVNTWAVIKTHAVPYTNGYFLNAVDMQRTPEGAQAQPESKQILVKLFGRTLYMSLVITGFCILLGYPIAFLLANLPMRSANLLMILVLLPFWTSLLVRTSAWKVMLQQQGVINDTLVWLGLVDDAARLIIINNQIGTIVAMTHILLPFMILPMYSVMQTIPPTYVRAAKSLGATNWTAFWRVYFPQSIPGIGAGSILVFILAIGYYITPEIVGGTQGVFISNRIAYHISSSLNWGLAAALGTILLGAVLILYWAYDRIVGIDNVKLGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MJU3</accession>
    <name>A0A1M5MJU3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Type IV leader peptidase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0865</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77485.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899570.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG77485">
        <property type="protein sequence ID" value="SHG77485"/>
        <property type="gene ID" value="SAMN05444003_0865"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="29"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="52"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="95"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="134"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG77485.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="152" mass="16512" checksum="26FF9ABCE685DCE3" modified="2017-03-15" version="1">MTVEMISYAVGAAILIAAFLDAKVAKIPNWIIFVLLALFVAQAVMFPTTVDLYWQIGVAAAVFVAGLVLFALGAIGAGAVKFGAAIMLFMPLEQWGWLLGIFVAGLFFYTFLFILMQGMFGSEDSNWAALRKRIVPMSWPIGTMALAGLFYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MMF7</accession>
    <name>A0A1M5MMF7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0914</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78594.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899632.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG78594">
        <property type="protein sequence ID" value="SHG78594"/>
        <property type="gene ID" value="SAMN05444003_0914"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG78594.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="296" mass="32300" checksum="F76BDEFDFCCD1617" modified="2017-03-15" version="1">MSIRALRTLVAVSQNGSFRAAAEAENLTPSAVSHQMKGLEDQLGVELFDRSAKSAVLNSQGHLLATRAERMVNDYDNLAMEISPQGQLAGELALGAVPTTLTDIVPKALADLRVLYPALKIRLVPGLTNDLLMQLERGQIQAAVISKPDVLPAKLKFSNIAVEEMMLLTSTLEEALDPIDLLQSRPFIRFSRDAVVGKTIEAWLQEHQIHVSEVMELEGLEAITSMVANGIGVSIVPWNRKAQKIDKRLRWAPLGDKGPRRIVGLASRPSSTTGQLHDVLHSALEQSFQWGGSHDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MQP2</accession>
    <name>A0A1M5MQP2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Sarcosine oxidase subunit alpha</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0969</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GcvT family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79714.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899715.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0969"/>
    <dbReference type="EnsemblBacteria" id="SHG79714">
        <property type="protein sequence ID" value="SHG79714"/>
        <property type="gene ID" value="SAMN05444003_0969"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008115">
        <property type="term" value="F:sarcosine oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046653">
        <property type="term" value="P:tetrahydrofolate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.440">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042204">
        <property type="entry name" value="2Fe-2S-bd_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028896">
        <property type="entry name" value="GCST/YgfZ/DmdA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013977">
        <property type="entry name" value="GCV_T_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006222">
        <property type="entry name" value="GCV_T_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029043">
        <property type="entry name" value="GcvT/YgfZ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006277">
        <property type="entry name" value="Sarcosine_oxidase_asu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041117">
        <property type="entry name" value="SoxA_A3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027266">
        <property type="entry name" value="TrmE/GcvT_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43757">
        <property type="entry name" value="PTHR43757"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01571">
        <property type="entry name" value="GCV_T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08669">
        <property type="entry name" value="GCV_T_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17806">
        <property type="entry name" value="SO_alpha_A3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037980">
        <property type="entry name" value="SoxA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101790">
        <property type="entry name" value="SSF101790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01372">
        <property type="entry name" value="soxA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="4">
        <location>
            <begin position="170"/>
            <end position="420"/>
        </location>
    </feature>
    <feature type="domain" description="SO_alpha_A3" evidence="6">
        <location>
            <begin position="520"/>
            <end position="602"/>
        </location>
    </feature>
    <feature type="domain" description="GCV_T" evidence="3">
        <location>
            <begin position="620"/>
            <end position="883"/>
        </location>
    </feature>
    <feature type="domain" description="GCV_T_C" evidence="5">
        <location>
            <begin position="909"/>
            <end position="994"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF08669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF17806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG79714.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="1002" mass="108996" checksum="A1BBF8BCA28CC839" modified="2017-03-15" version="1">MSTRLQSSGRLLNKNNPVSFTFNGKKLRGYEGDTLASALLANDQLLVGRSFKYHRPRGVVASGAEEPNGLVNLGRDGHFEPNQRVTTQELFDGLEATSQNHFPTLEFDVGAINTHLSRFLPAGFYYKMFIYPRPFWKHVYEPFIRKSAGLGKAPKDRDADTYEHFHAYVDVLIVGGGIAGLTAALAAGRAGAQVLLIEQTAHWGGRAMVDQPEIDGMSAEAWVAQTLAELNGMANVQTRTRMMGSGVYDHGFAMAYERLGDHGPHDGPRHRLWKIRAKQIVTATGAIERPLSFAANDLPGVLLASAVRDYALNYGVSVGDRTVVVTNNDDAYRTAIALKEAGLEVPAIIDARTEATGQLPEAARALGIRVETGKGVATVKGGKRVTGVAICAQAGEGSVLEEIGCDCVAMSGGWSPVVHLWSHCGGKLKWDDEQAMFRPDPKRPPMNQNGIGFVSTAGVANGFLSTEGALTDAFAAGETAAKLAGAKGKADKAPMGADAAEQPISPVWLMPQGASYKLRSKAWLDFQNDVKVSDVQLAAQEGFESVEHAKRYTTLGMATDQGKLSNINGLAILSKSLDSEIPNVGTTTFRPPYTPISMSSIAGVAQNELFQPLRKTPVSDWSNDNGADNEPVGAWRRAFAYVRSGESVHDAVNREVKNTRENLGLLDASTLGKLIVKGPDAGKFLDMMYTNMMSNLKVGKCRYGLMCTENGFLMDDGVVARIDEDTWLCHTTTGGAERIHGWMEDWLQCEWWDWKVYVANVTEQFAQIAVVGPNARKVLEKLGGMDVSKEALPFMEWRDGKIGEFDARAYRISFSGELSYEIAVPASQGRAFWDALTEAGEEFGVMPYGTECLHILRAEKGFIMIGDETDGTVIPQDLNLQWALSKKKDDYLGKRAHERSHMADPNRWKLVGLETLDGSVLPDGAYAIAEGTNENGQRNTQGRVTSTYYSANLGRGIAMGLVHNGPNRMGEVISFTNIGGEPIRTKIVDPVVYDKDGEKQNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MRB1</accession>
    <name>A0A1M5MRB1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0971</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79757.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG79757">
        <property type="protein sequence ID" value="SHG79757"/>
        <property type="gene ID" value="SAMN05444003_0971"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="16"/>
            <end position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG79757.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="58" mass="5874" checksum="BE537C92E10066E4" modified="2017-03-15" version="1">MVDFTDKYEVEKSGSAGVYIAAAFVVAVLLFMLFAGGGGTVSDPALLTTPEATATTGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MRL1</accession>
    <name>A0A1M5MRL1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Peroxiredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0976</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79855.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899721.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0976"/>
    <dbReference type="EnsemblBacteria" id="SHG79855">
        <property type="protein sequence ID" value="SHG79855"/>
        <property type="gene ID" value="SAMN05444003_0976"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016209">
        <property type="term" value="F:antioxidant activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000866">
        <property type="entry name" value="AhpC/TSA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00578">
        <property type="entry name" value="AhpC-TSA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin" evidence="2">
        <location>
            <begin position="8"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="162"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG79855.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="181" mass="19961" checksum="F6DD5430A0D89975" modified="2017-03-15" version="1">MLLDTPICDFGWQAPEFTLKDPDGTAFTMSEHLGDKGLLIAFICNHCPYVKAIADRLAADAKALQSEGVNVLAVMSNDYLSYTADSPEKMKKFSEQYGFTFPYLVDEDQFVGQAYGAVCTPDFFGFNKDGGLQYRGRLDSAAMGDPTDRVPELLNAMRQVAETGEGPRDQTPSMGCSIKWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MRW4</accession>
    <name>A0A1M5MRW4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Superfamily II DNA and RNA helicase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_0985</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="6">Belongs to the DEAD box helicase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80048.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899729.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0985"/>
    <dbReference type="EnsemblBacteria" id="SHG80048">
        <property type="protein sequence ID" value="SHG80048"/>
        <property type="gene ID" value="SAMN05444003_0985"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003724">
        <property type="term" value="F:RNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000629">
        <property type="entry name" value="RNA-helicase_DEAD-box_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014014">
        <property type="entry name" value="RNA_helicase_DEAD_Q_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00039">
        <property type="entry name" value="DEAD_ATP_HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51195">
        <property type="entry name" value="Q_MOTIF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 6 11" id="KW-0347">Helicase</keyword>
    <keyword evidence="2 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Q_MOTIF" evidence="10">
        <location>
            <begin position="2"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase ATP-binding" evidence="8">
        <location>
            <begin position="33"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="9">
        <location>
            <begin position="244"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="375"/>
            <end position="451"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Q motif" evidence="5">
        <location>
            <begin position="2"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="375"/>
            <end position="436"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000492"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG80048.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="465" mass="51305" checksum="243866EA6ADA9F75" modified="2017-03-15" version="1">MIKFTDLPLHTKVLKAIEEAGYTEPTPIQAGAIPPACEGKDVLGIAQTGTGKTASFTLPMITLLNRGRARARMPRSLVLAPTRELAAQVAENFDTYAKYTKLTKALLIGGVSFKDQDALIDRGVDVLIATPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIEEIFKKTPFTRQTLFFSATMAPEIERITNTFLSAPVKVEVARAATTSENIKQGVVMFKASRKDREGTEKRKLLRALIDAEGDDCTNAIIFCNRKTDVDICAKSLKKYGYNASPIHGDLDQTQRMKTLDGFRDGSIRFLVASDVAARGLDIPNVSHVFNFDVPSHAEDYVHRIGRTGRAGRKGTAMMICVPRDEKNFADVERLVKLEIPRVESPMKPEPPKEKAQDDKPKQSKGRIRKKDEAPKVEAAPESSEKPAERPKRERGGRGRSRNEPANTVVGVGDDVPGFLAMSFAERGKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MZT0</accession>
    <name>A0A1M5MZT0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Dihydroneopterin aldolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1092</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82253.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899824.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1092"/>
    <dbReference type="EnsemblBacteria" id="SHG82253">
        <property type="protein sequence ID" value="SHG82253"/>
        <property type="gene ID" value="SAMN05444003_1092"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004150">
        <property type="term" value="F:dihydroneopterin aldolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006760">
        <property type="term" value="P:folic acid-containing compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006157">
        <property type="entry name" value="FolB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043133">
        <property type="entry name" value="GTP-CH-I_C/QueF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02152">
        <property type="entry name" value="FolB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00905">
        <property type="entry name" value="FolB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FolB" evidence="1">
        <location>
            <begin position="27"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00905"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG82253.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="305" mass="33501" checksum="503CA2CD83E9FAD5" modified="2017-03-15" version="1">MNDDIRLAFAHPSERAAASTDVPYDRISLRDYTVEVEIGAFQAERGKLQRVKFNVVVEVLPDTGPIDDDVDRILSYDKVIEAIQVELEAERINLLETLAARVAERILLEPMAERVFVRIEKLDRGPFALGVEIVRSSDGAQPAWQDVVDAPHPRVLFLSNEAIASPNLKGWIDQLDDREAPLILCVGAGDLQCPSTGHAMTQRRIDLLAIEQNAWVLAARDLRCKVVATRTELDWAMKNGQICVWAPSKIVLDAVEGPSASSRDAVGLAAWFAEEMLAKELVVIGADAPDVSMPARSVSSDQATL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N7Z6</accession>
    <name>A0A1M5N7Z6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Probable transcriptional regulatory protein SAMN05444003_1230</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_1230</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the TACO1 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85552.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899940.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1230"/>
    <dbReference type="EnsemblBacteria" id="SHG85552">
        <property type="protein sequence ID" value="SHG85552"/>
        <property type="gene ID" value="SAMN05444003_1230"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.980">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00693">
        <property type="entry name" value="Transcrip_reg_TACO1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017856">
        <property type="entry name" value="Integrase-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002876">
        <property type="entry name" value="Transcrip_reg_TACO1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026564">
        <property type="entry name" value="Transcrip_reg_TACO1-like_dom3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029072">
        <property type="entry name" value="YebC-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12532">
        <property type="entry name" value="PTHR12532"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01709">
        <property type="entry name" value="Transcrip_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75625">
        <property type="entry name" value="SSF75625"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01033">
        <property type="entry name" value="TIGR01033"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2 4" id="KW-0805">Transcription regulation</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00693"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG85552.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="249" mass="27275" checksum="8418C88A37EA9055" modified="2017-03-15" version="1">MAGHSKWANIQHRKGRQDKLRSKLFSKLAKEITVAAKMGDPDPEKNPRLRLAVKEARSNSVPKDVIDRAIKKSQGGDAENYDEIRYEGYGPNGVAVIVETMTDNKNRTASTVRSTFSKNGGNLGETGSVGFMFERKGQIIYPGSVGDEDTVMMAAIEAGAEDAQSDEETHVIICADTDLHEVSNALESDLGESESTKLIWQPTTTTELDLEGLTKLMKLVDTLEEDDDVQTVTTNFEASDNVMEAFGNQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NCN0</accession>
    <name>A0A1M5NCN0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Bifunctional protein FolD</fullName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName evidence="10">Methylenetetrahydrofolate dehydrogenase</fullName>
                <ecNumber evidence="10">1.5.1.5</ecNumber>
            </recommendedName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="10">Methenyltetrahydrofolate cyclohydrolase</fullName>
                <ecNumber evidence="10">3.5.4.9</ecNumber>
            </recommendedName>
        </domain>
    </protein>
    <gene>
        <name evidence="10" type="primary">folD</name>
        <name evidence="13" type="ORF">SAMN05444003_1336</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>(6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + NADP(+) = 5,10-methenyltetrahydrofolate + NADPH</text>
            <dbReference type="Rhea" id="RHEA:22812"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:57455"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.5.1.5"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>5,10-methenyltetrahydrofolate + H2O = (6S)-10-formyltetrahydrofolate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:23700"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57454"/>
            <dbReference type="ChEBI" id="CHEBI:57455"/>
            <dbReference type="EC" id="3.5.4.9"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="10">One-carbon metabolism; tetrahydrofolate interconversion.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the tetrahydrofolate dehydrogenase/cyclohydrolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="1.5.1.5" evidence="10"/>
    <dbReference type="EC" id="3.5.4.9" evidence="10"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87376.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900032.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1336"/>
    <dbReference type="EnsemblBacteria" id="SHG87376">
        <property type="protein sequence ID" value="SHG87376"/>
        <property type="gene ID" value="SAMN05444003_1336"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00193"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004477">
        <property type="term" value="F:methenyltetrahydrofolate cyclohydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004488">
        <property type="term" value="F:methylenetetrahydrofolate dehydrogenase (NADP+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009086">
        <property type="term" value="P:methionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006164">
        <property type="term" value="P:purine nucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035999">
        <property type="term" value="P:tetrahydrofolate interconversion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd01080">
        <property type="entry name" value="NAD_bind_m-THF_DH_Cyclohyd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01576">
        <property type="entry name" value="THF_DHG_CYH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046346">
        <property type="entry name" value="Aminiacid_DH-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000672">
        <property type="entry name" value="THF_DH/CycHdrlase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020630">
        <property type="entry name" value="THF_DH/CycHdrlase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020867">
        <property type="entry name" value="THF_DH/CycHdrlase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020631">
        <property type="entry name" value="THF_DH/CycHdrlase_NAD-bd_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00763">
        <property type="entry name" value="THF_DHG_CYH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02882">
        <property type="entry name" value="THF_DHG_CYH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00085">
        <property type="entry name" value="THFDHDRGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53223">
        <property type="entry name" value="SSF53223"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00767">
        <property type="entry name" value="THF_DHG_CYH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 10" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7 10" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="4 10 13" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8 10" id="KW-0486">Methionine biosynthesis</keyword>
    <keyword evidence="9 10" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="5 10" id="KW-0521">NADP</keyword>
    <keyword evidence="1 10" id="KW-0554">One-carbon metabolism</keyword>
    <keyword evidence="6 10" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3 10" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="THF_DHG_CYH" evidence="11">
        <location>
            <begin position="6"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="THF_DHG_CYH_C" evidence="12">
        <location>
            <begin position="126"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="166"/>
            <end position="168"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="191"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="232"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF02882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHG87376.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="299" mass="31508" checksum="CD892A0073036520" modified="2017-03-15" version="1">MTGQVIDGKAFAADVRAQIAEHVVRLKEENGITPGLAVILVGEDPASEVYVAAKHKQTLEVGMASFEHKLPADVSEKDLFDLIDQLNADPSVHGILCQFPVPDHLEERRVVARIDPSKDVDGLSVVNAGLLASGEKGLVSCTPLGCLMLLRDQLGNMSGKEAVVIGRSNLFGKPMGQLLLQENCTVTIAHSRTADLPEVCRRADILVAAVGRAEMVKADWVKPGATVIDVGITRIPHPEKPGKSKLLGDVAYVEVAAVADAITPVPGGVGPMTIACLLANTLTACCRAHNLDEPSGLTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NE22</accession>
    <name>A0A1M5NE22_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Peptide methionine sulfoxide reductase MsrA</fullName>
            <shortName evidence="4">Protein-methionine-S-oxide reductase</shortName>
            <ecNumber evidence="4">1.8.4.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Peptide-methionine (S)-S-oxide reductase</fullName>
            <shortName evidence="4">Peptide Met(O) reductase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">msrA</name>
        <name evidence="6" type="ORF">SAMN05444003_1355</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 4">
            <text>[thioredoxin]-disulfide + H2O + L-methionine = [thioredoxin]-dithiol + L-methionine (S)-S-oxide</text>
            <dbReference type="Rhea" id="RHEA:19993"/>
            <dbReference type="Rhea" id="RHEA-COMP:10698"/>
            <dbReference type="Rhea" id="RHEA-COMP:10700"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:50058"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:58772"/>
            <dbReference type="EC" id="1.8.4.11"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 4">
            <text>[thioredoxin]-disulfide + H2O + L-methionyl-[protein] = [thioredoxin]-dithiol + L-methionyl-(S)-S-oxide-[protein]</text>
            <dbReference type="Rhea" id="RHEA:14217"/>
            <dbReference type="Rhea" id="RHEA-COMP:10698"/>
            <dbReference type="Rhea" id="RHEA-COMP:10700"/>
            <dbReference type="Rhea" id="RHEA-COMP:12313"/>
            <dbReference type="Rhea" id="RHEA-COMP:12315"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16044"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:44120"/>
            <dbReference type="ChEBI" id="CHEBI:50058"/>
            <dbReference type="EC" id="1.8.4.11"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the MsrA Met sulfoxide reductase family.</text>
    </comment>
    <dbReference type="EC" id="1.8.4.11" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87707.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900046.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1355"/>
    <dbReference type="EnsemblBacteria" id="SHG87707">
        <property type="protein sequence ID" value="SHG87707"/>
        <property type="gene ID" value="SAMN05444003_1355"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033744">
        <property type="term" value="F:L-methionine:thioredoxin-disulfide S-oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008113">
        <property type="term" value="F:peptide-methionine (S)-S-oxide reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1060.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01401">
        <property type="entry name" value="MsrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002569">
        <property type="entry name" value="Met_Sox_Rdtase_MsrA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036509">
        <property type="entry name" value="Met_Sox_Rdtase_MsrA_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01625">
        <property type="entry name" value="PMSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55068">
        <property type="entry name" value="SSF55068"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00401">
        <property type="entry name" value="msrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PMSR" evidence="5">
        <location>
            <begin position="49"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="active site" evidence="4">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001497"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01401"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01625"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG87707.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="216" mass="23532" checksum="6FB9C7841085838D" modified="2017-03-15" version="1">MFFMSKAKSEMVSAGDALVGREMAIPTADTHFVYGRPLNADVPDGMEEAMFGMGCFWGVERMFWKLNGVYSTMVGYAGGYTPNATYEEVCSGKTGHNEVVRVVYDPDVISYDDLLRVFWEGHDPTQGMRQGNDRGTQYRSGIYTYSDAQAKAAEASKAAFAPKLSAAGYGMITTEIIDAPTFYFAEDYHQQYLAKNPNGYCGIGGTGVTCPIGVGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NIL8</accession>
    <name>A0A1M5NIL8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nucleotide-binding universal stress protein, UspA family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1440</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89360.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900124.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1440"/>
    <dbReference type="EnsemblBacteria" id="SHG89360">
        <property type="protein sequence ID" value="SHG89360"/>
        <property type="gene ID" value="SAMN05444003_1440"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006016">
        <property type="entry name" value="UspA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00582">
        <property type="entry name" value="Usp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Usp" evidence="1">
        <location>
            <begin position="1"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG89360.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="151" mass="16695" checksum="1F073064CD6CF00D" modified="2017-03-15" version="1">MRKLMVVLDDSKECLNAMRFAAMRAAHSEGSVTVLAVIPPEEFNHWIGVGNIMREEARERIEVHFEVFAKWMREKQNINPELVIREGVAVQEIMSQISEDPEIGILVLGAGSENNGPGPLVTKLSRQAGTLPIPIAIVPGDISKERLEAIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NLF1</accession>
    <name>A0A1M5NLF1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">MAPEG family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1484</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90380.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900163.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1484"/>
    <dbReference type="EnsemblBacteria" id="SHG90380">
        <property type="protein sequence ID" value="SHG90380"/>
        <property type="gene ID" value="SAMN05444003_1484"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.550">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023352">
        <property type="entry name" value="MAPEG-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001129">
        <property type="entry name" value="Membr-assoc_MAPEG"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01124">
        <property type="entry name" value="MAPEG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161084">
        <property type="entry name" value="SSF161084"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="7"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="65"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="89"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="117"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG90380.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="136" mass="14960" checksum="4CC2F0320F6386EC" modified="2017-03-15" version="1">MTPELQVLAYAVVLQATQFALMSISANLDLGPSKTLSARDESHLGGPLSSQLSDKPARLYRAMNNHFEALILYTAAVVVVVLGDKTTGLTAICAWTYLAARILYVPAYYFGWAPWRSLIWFTGFLATLAMVLSTWI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NQ90</accession>
    <name>A0A1M5NQ90_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Dimethylamine/trimethylamine dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1538</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">In the N-terminal section; belongs to the NADH:flavin oxidoreductase/NADH oxidase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91605.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900209.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1538"/>
    <dbReference type="EnsemblBacteria" id="SHG91605">
        <property type="protein sequence ID" value="SHG91605"/>
        <property type="gene ID" value="SAMN05444003_1538"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02929">
        <property type="entry name" value="TMADH_HD_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001155">
        <property type="entry name" value="OxRdtase_FMN_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037348">
        <property type="entry name" value="TMADH/HD_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00724">
        <property type="entry name" value="Oxidored_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Oxidored_FMN" evidence="2">
        <location>
            <begin position="10"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="domain" description="Pyr_redox_2" evidence="3">
        <location>
            <begin position="389"/>
            <end position="613"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG91605.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="676" mass="74393" checksum="C173B7EAC8BCE0DB" modified="2017-03-15" version="1">MTRDPRFDVLFEPVKIGPVTAKNRFYQVPHCNGMGRAFPSSMTEMRRTKAEGGWAVICTEEMEIHHTADHTPWAGARLWDDRDIPVWAKMCDGIHEFGSLAGAELNHAGATTANRWSREVPLGPSHFPVEMYDPVQVRAMDREDIRALRRWHRDAALRAKKAGFDLVYVYLGHQLSTMSHFLSPYRNRRSDEYGGSLENRARLAREILEETKDAVGDTCAVAIRFSVDELMGDAGITSEGEGRELIEMFAELPDLWDVNISGWEHDSATSRFKGSGFQDDYVAFVKQVTTKPVVGVGRYTSPDAMVSLVKSGKLDMIGAARPSIADPFLPKKIEEGRIEDIRECIGCNICVSGDHHSAPIRCTQNPTMGEEWRKGWHPERIAPKDSDASVLIVGAGPAGLEAARALGQRGYTVTLADKAAEAGGRVARERRLPGLSEWGRVVDYRLYQISQMPNVSLYLESEMTPDTLDEFGADHVALATGARWNADGIGRQNPRGISIADGAKIMTPDDVMAGVVPDGPVVVFDDDHFYMGGAVAEMLLRAGADVTFVTPAPEVSSWTHHTLEQHAIQKRLLDLGAKIHCGQNVASIDKDTVTLENVYNDALQVLAASAVILVSMRTPVDDLWLARPEVTRIGDAYGPSTIAASVYSGHRYARELDAAPHDGVPFLRELVELSPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NQI5</accession>
    <name>A0A1M5NQI5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Sulfate permease, SulP family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1544</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 5">Membrane</location>
            <topology evidence="1 5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the SLC26A/SulP transporter (TC 2.A.53) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91748.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900213.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1544"/>
    <dbReference type="EnsemblBacteria" id="SHG91748">
        <property type="protein sequence ID" value="SHG91748"/>
        <property type="gene ID" value="SAMN05444003_1544"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008271">
        <property type="term" value="F:secondary active sulfate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.750.24">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011547">
        <property type="entry name" value="SLC26A/SulP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001902">
        <property type="entry name" value="SLC26A/SulP_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002645">
        <property type="entry name" value="STAS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036513">
        <property type="entry name" value="STAS_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11814">
        <property type="entry name" value="PTHR11814"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01740">
        <property type="entry name" value="STAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00916">
        <property type="entry name" value="Sulfate_transp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52091">
        <property type="entry name" value="SSF52091"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50801">
        <property type="entry name" value="STAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="49"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="95"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="127"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="174"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="198"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="244"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="327"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="380"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="domain" description="STAS" evidence="6">
        <location>
            <begin position="444"/>
            <end position="553"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG91748.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="565" mass="59270" checksum="08E753E3787C0EA9" modified="2017-03-15" version="1">MKQLLTLPGGLKLNRTNIVPDLVAGATFAVVNVPQGMANAVLASVNPVAGLYALMIAMPIGAMYTSSVYMNVSTTGALSVAAGEALSDVPDQSKISALVTLVVLIGLAQLAMGVLKLGSLVRYISNSVMTGFITGIAALIILGAIPDITGYESPLPNHLLRIADTILNWRSLDYAAVVFGIATIAIIFYAQTTRVAKFALIVALVAVTAMVQLSMAVLSIGDTELVKDVAAIPRSLPDFVLPDLGYLPSLTLPAIAIAVIGLVQGAGVGQSYPNPDGRFPDASQDFVGQGVANTAAGFFGAIPSGGSMSGTAVNVQAGAKSRWANIFAGLIVIAIVFFFVGLVELVPMAALGGLLVVVGIQNVSPKNILIIWNTGTLPRIAMSVTFLATLMVPLQYAILLGIALSFVLQVMQASNRVEVRELELVANGFPIDKPRPYHLVADRVSILRVRGALFFASAKALEAQLPDASTGDRSVVILILRDVDDLGSTVIRLLQRYAQELEQTQSALMLAGVNDQLMRQLGRTGLLEQLSADNVFAEQDKIGAALNEAIEQANAWIEGKGQSVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NSE2</accession>
    <name>A0A1M5NSE2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Inorganic diphosphatase</fullName>
            <ecNumber evidence="3">3.6.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Pyrophosphate phospho-hydrolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_1569</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>diphosphate + H2O = H(+) + 2 phosphate</text>
            <dbReference type="Rhea" id="RHEA:24576"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="EC" id="3.6.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <dbReference type="EC" id="3.6.1.1" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG92387.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900238.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1569"/>
    <dbReference type="EnsemblBacteria" id="SHG92387">
        <property type="protein sequence ID" value="SHG92387"/>
        <property type="gene ID" value="SAMN05444003_1569"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004427">
        <property type="term" value="F:inorganic diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.310.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001667">
        <property type="entry name" value="DDH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038763">
        <property type="entry name" value="DHH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004097">
        <property type="entry name" value="DHHA2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038222">
        <property type="entry name" value="DHHA2_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01368">
        <property type="entry name" value="DHH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02833">
        <property type="entry name" value="DHHA2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01131">
        <property type="entry name" value="DHHA2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64182">
        <property type="entry name" value="SSF64182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0464">Manganese</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DHHA2" evidence="8">
        <location>
            <begin position="180"/>
            <end position="305"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00032535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM01131"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG92387.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="305" mass="32994" checksum="D044A744B4C0A22F" modified="2017-03-15" version="1">MTTLVFGHKAPDTDSLGSALIWDWFLNHTGTDAKAVLLGDPNTEAAFVAKRWGFDQPEIIADVADDQPCVIVDTNNPAELPANINNADVQAIIDHHKLVGGLETKGPIDITIRPLACTATIMYHLMGEHAAHMPEGIKGLVLSCILSDTLEFRSPTTTEIDQNLAIQLASELDIDLKAYASEMFEAKSDVSAFSDAELLRMDSKEYAVGDTKFRVSVLETTAPKIVLDRKDSLMATMTDVAAEDGVDQVLLFVVDILAEEATMLIPNELSKTVAEKSFDATVSGDTVVLPGVMSRKKQIIPNLAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NW14</accession>
    <name>A0A1M5NW14_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acyl-CoA thioesterase-1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1621</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93668.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1621"/>
    <dbReference type="EnsemblBacteria" id="SHG93668">
        <property type="protein sequence ID" value="SHG93668"/>
        <property type="gene ID" value="SAMN05444003_1621"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016788">
        <property type="term" value="F:hydrolase activity, acting on ester bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013830">
        <property type="entry name" value="SGNH_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13472">
        <property type="entry name" value="Lipase_GDSL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SGNH_hydro" evidence="1">
        <location>
            <begin position="24"/>
            <end position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG93668.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="210" mass="21940" checksum="F8F0EB6EB48CF275" modified="2017-03-15" version="1">MRNLSVGLLLLGGAAQAETVRIAALGDSLIAGYGLTPETGFVPQLQAWLDEAGADVIVINAGVSGDTTAGGLSRVAWMLTPEVDAMIVMLGANDYLRAIDPNLAEENLQGVINVGAEAGVEMLLIGMEVGSNYGPEYKAAFDAMYPRLAEGNDIALFGNWFQGLRDVTANQSEFTQYLQGDGLHPTAEGVGLIVDAMGPAVLDLIASVEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PIM8</accession>
    <name>A0A1M5PIM8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1662</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH01600.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900485.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH01600">
        <property type="protein sequence ID" value="SHH01600"/>
        <property type="gene ID" value="SAMN05444003_1662"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018062">
        <property type="entry name" value="HTH_AraC-typ_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020449">
        <property type="entry name" value="Tscrpt_reg_HTH_AraC-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009594">
        <property type="entry name" value="Tscrpt_reg_HTH_AraC_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06719">
        <property type="entry name" value="AraC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00032">
        <property type="entry name" value="HTHARAC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00041">
        <property type="entry name" value="HTH_ARAC_FAMILY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="2">
        <location>
            <begin position="192"/>
            <end position="289"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH01600.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="290" mass="31892" checksum="F1228203D2517BD9" modified="2017-03-15" version="1">MLQDQIRNHIEPFIHQDGLTETGLPGVQLFRATEALPCVPAVYDPSVIAIVSGSKEAVLDGKRFVYDKSQYLCCPTSLPLKAGTPKASLEAPLYGVFISLNARIMNELSLEMENAGNPGIRTDGGPSYRAIGLSRWDERFSDALLRLLSLLSNEMDAAVLADVRVRELYYAILKGDAGQFVRDSFGVGNAIARSIAHVSSNLDRPLSIDDLAGRAHMSRAVFHRKFKDATTMSPIQFVKSMRLNSAAMRIAEGYPVNQAATDVGYVSASQFSRDFKRMYGQSPRQWSLAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PIW1</accession>
    <name>A0A1M5PIW1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1668</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH01722.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1668"/>
    <dbReference type="EnsemblBacteria" id="SHH01722">
        <property type="protein sequence ID" value="SHH01722"/>
        <property type="gene ID" value="SAMN05444003_1668"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.109.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000415">
        <property type="entry name" value="Nitroreductase-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55469">
        <property type="entry name" value="SSF55469"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH01722.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="380" mass="41731" checksum="D890A8624BE40C51" modified="2017-03-15" version="1">MELTRRKMLGIIGGGTVIAAGAGFGYHVTRPLEVALKPWKLAGQYDDVRRNVLSYALLAPNPHNRQPWMVDLSTDNEITLFADLDRLLPHTDPYSRQITIGLGCFLELLRMAAAQEGYGVAFDLFPDGSNPEALDLRPIARVTLNAGAGDPDPLFQYVMERRSTKEPYDLTRPVAAGTLATVADVVINGGSAGGTVDPDDIDELRALSLRARLIETETPHTYKESFDLFRIGRKEVDANPDGIDFSGPLFETARSAGFLSREAALDPASQVYSGGIDYITNNSMTAMGFVWLTTQTNTRTDQINAGRDWLRMNLAVTPLDLAMQPMSQALQEYPEMAEEYAAIHNRLAPQGETVQMLARVGYGPKVAASPRWTLENKIIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PLM6</accession>
    <name>A0A1M5PLM6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Endonuclease/Exonuclease/phosphatase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1717</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02684.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900532.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1717"/>
    <dbReference type="EnsemblBacteria" id="SHH02684">
        <property type="protein sequence ID" value="SHH02684"/>
        <property type="gene ID" value="SAMN05444003_1717"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="SSF56219"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="2" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endo/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="39"/>
            <end position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH02684.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="395" mass="43946" checksum="80F3EA45C457C49C" modified="2017-03-15" version="1">MTEFTIASFNVKNLIGAEQEYYTYESYTPEEHAWKQSWLAEQVLTLNADVICFQEIFEEDALQAVIDEADAAGMEANESNIPDRSKKYARKAIFRKLAYAPYTNAALAFAPNISDGAPGHRRPGVAILSKTGFVGEPEIIQDLSEPLEIPFTDLGGSDGGSYKVSRLSRPLLKARVPVGDTVITVFNCHLKSKLGELDRPDGAPFPPAADLVNYDAAARALGSLRAGLRRMAEAWVLRRAILESLEAGQPVMVLGDFNDSEHAVSTEIITGEAPFKNYAWMRRHDATHKSDRYTDAENEIIQEKISSVKLHSAEKLFVRKSLRDMVFTSAFGGVFESIDQILMSQHFHPDNPNRIGQMDYFSVLNDHLTDGSHPEAPYNKLASDHGQIMAHMHIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PNQ2</accession>
    <name>A0A1M5PNQ2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cob(II)yrinic acid a,c-diamide reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1727</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02863.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900539.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1727"/>
    <dbReference type="EnsemblBacteria" id="SHH02863">
        <property type="protein sequence ID" value="SHH02863"/>
        <property type="gene ID" value="SAMN05444003_1727"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.109.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012825">
        <property type="entry name" value="BluB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029479">
        <property type="entry name" value="Nitroreductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000415">
        <property type="entry name" value="Nitroreductase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00881">
        <property type="entry name" value="Nitroreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55469">
        <property type="entry name" value="SSF55469"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02476">
        <property type="entry name" value="BluB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nitroreductase" evidence="2">
        <location>
            <begin position="16"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="187"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="193"/>
            <end position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH02863.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="207" mass="23285" checksum="52A0BD5321683D10" modified="2017-03-15" version="1">MKFDDAHQDALRDILTWRRDVRHFRSDPIEAEVLAAIEASVDYAPSVGNSRPWRFVRVQTEAVREIVIASFENSNEAAALDYAEDEATDYRALKLAGLREAPVHIAVFTAPNPEEGRGLGRQTMPEMLAYSTVGAINTMWLVARSLNVGIGWVSILEPAAVCDALDVPEDWQLTGYLCLGYPQEDHDTPELQRRGWQSNTETVWIDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PPA3</accession>
    <name>A0A1M5PPA3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 8 9">Uroporphyrinogen decarboxylase</fullName>
            <shortName evidence="8">UPD</shortName>
            <shortName evidence="8">URO-D</shortName>
            <ecNumber evidence="4 8 9">4.1.1.37</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">hemE</name>
        <name evidence="13" type="ORF">SAMN05444003_1764</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8 9">
            <text>4 H(+) + uroporphyrinogen III = 4 CO2 + coproporphyrinogen III</text>
            <dbReference type="Rhea" id="RHEA:19865"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57308"/>
            <dbReference type="ChEBI" id="CHEBI:57309"/>
            <dbReference type="EC" id="4.1.1.37"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 8 9">Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; coproporphyrinogen-III from 5-aminolevulinate: step 4/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3 8">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8 10">Belongs to the uroporphyrinogen decarboxylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.37" evidence="4 8 9"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03617.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900569.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1764"/>
    <dbReference type="EnsemblBacteria" id="SHH03617">
        <property type="protein sequence ID" value="SHH03617"/>
        <property type="gene ID" value="SAMN05444003_1764"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00251">
        <property type="reaction ID" value="UER00321"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004853">
        <property type="term" value="F:uroporphyrinogen decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006782">
        <property type="term" value="P:protoporphyrinogen IX biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00717">
        <property type="entry name" value="URO-D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.210">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00218">
        <property type="entry name" value="URO_D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038071">
        <property type="entry name" value="UROD/MetE-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006361">
        <property type="entry name" value="Uroporphyrinogen_deCO2ase_HemE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000257">
        <property type="entry name" value="Uroporphyrinogen_deCOase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01208">
        <property type="entry name" value="URO-D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51726">
        <property type="entry name" value="SSF51726"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01464">
        <property type="entry name" value="hemE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00906">
        <property type="entry name" value="UROD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00907">
        <property type="entry name" value="UROD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 8 9" id="KW-0210">Decarboxylase</keyword>
    <keyword evidence="6 8 9" id="KW-0456">Lyase</keyword>
    <keyword evidence="7 8 9" id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Uroporphyrinogen_deCOase" evidence="11">
        <location>
            <begin position="20"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="domain" description="Uroporphyrinogen_deCOase" evidence="12">
        <location>
            <begin position="140"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="8">
        <location>
            <begin position="25"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="75"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="152"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="207"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="323"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="8">
        <location>
            <position position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004804"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00218"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU000554"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU004169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS00906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS00907"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHH03617.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="344" mass="36903" checksum="5723B55D6BF23C17" modified="2017-03-15" version="1">MTASKTILRALAGETLPTPPIWMMRQAGRYLPEYKATRAQAGDFLSLCYNPELAAEVTLQPIRRYGFDAAILFADILLLPQALGADLWFETGEGPRLSTITSGAELANLKPVEDIHETLNPVYETVKILSEELPKETTLIGFAGAPWTVATYMIAGHGTPDQGPAHALKAEGKTTFEGILDRLTEGTIEYLSRQIQAGAEVVKIFDSWAGSLQGTDFNDYSLKPMQRITSAIKERHPGVPVIAFPRGAGQDYEGAHAATGADCIALDDGVTAEWAAGAVQKDGCVQGNLASSHMVTGGDALISETKRICQAFNQGPHIFNLGHGITPDADPKNVAIMIETVRNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PQ06</accession>
    <name>A0A1M5PQ06_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Polyketide cyclase / dehydrase and lipid transport</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1778</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03897.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900581.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1778"/>
    <dbReference type="EnsemblBacteria" id="SHH03897">
        <property type="protein sequence ID" value="SHH03897"/>
        <property type="gene ID" value="SAMN05444003_1778"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH03897.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="154" mass="17528" checksum="6BAAB9CCE3AB45EF" modified="2017-03-15" version="1">MKFSAREDVEAPAEFVFQQITDFQSYERQALRRGADVRRVDSGDYKVGSAWDVAFTYRGKDRKLRATVEEQTPPSIVRVSSKSDGLEGETVLEVVPLSQNRTRIAASIDIRPKTLSARLLIQSLKLAKTNLTNRFKRRVSDFAEVLETRYQSAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PQ24</accession>
    <name>A0A1M5PQ24_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">NAD(+) diphosphatase</fullName>
            <ecNumber evidence="2">3.6.1.22</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_1779</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the Nudix hydrolase family.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.22" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1779"/>
    <dbReference type="EnsemblBacteria" id="SHH03917">
        <property type="protein sequence ID" value="SHH03917"/>
        <property type="gene ID" value="SAMN05444003_1779"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000210">
        <property type="term" value="F:NAD+ diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015375">
        <property type="entry name" value="NADH_PPase-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020476">
        <property type="entry name" value="Nudix_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020084">
        <property type="entry name" value="NUDIX_hydrolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015376">
        <property type="entry name" value="Znr_NADH_PPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09296">
        <property type="entry name" value="NUDIX-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09297">
        <property type="entry name" value="zf-NADH-PPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00502">
        <property type="entry name" value="NUDIXFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00893">
        <property type="entry name" value="NUDIX_BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0520">NAD</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="8">
        <location>
            <begin position="188"/>
            <end position="319"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012381"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003476"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH03917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="327" mass="36238" checksum="1D8CB1CB52DE9E59" modified="2017-03-15" version="1">MIAAQSERCHVFVMKIAEQVTFGGSGLDRAAERRGKLAAADFESADFIVLWRGKVLIEDAALVRVGETHPILNDPKHPPVFLGVDEGKLIFAVDISNWEPETDVSDLDTFADKTEQSHPSLPDSNIFVELRLHMAKFFARDAELAATAKAILGWHETHQFCSKCGHLSEMQLDGWQRDCPACGAHHFPRTDPVVIMLITKGNSVLLGRSHGWPDGMYSLLAGFIEPGETMEAAVRREVFEEAGIEVGEVGYLASQPWPFPSSLMMGCYGEALNDQIKVDPEELDDALWCTREEMAEVFAGDHPTILPARKGAIAHFLLENWLADRLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PQ29</accession>
    <name>A0A1M5PQ29_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Microcin C transport system ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1772</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03776.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900576.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1772"/>
    <dbReference type="EnsemblBacteria" id="SHH03776">
        <property type="protein sequence ID" value="SHH03776"/>
        <property type="gene ID" value="SAMN05444003_1772"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015833">
        <property type="term" value="P:peptide transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013563">
        <property type="entry name" value="Oligopep_ABC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08352">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="6">
        <location>
            <begin position="7"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="6">
        <location>
            <begin position="284"/>
            <end position="522"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="41"/>
            <end position="48"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="316"/>
            <end position="323"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH03776.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="531" mass="58537" checksum="50CB2F54EC261C89" modified="2017-03-15" version="1">MSRVLEVKDLNVRFRQDGEITHAVRGVSYHVEKGETVALVGESGSGKSVTALSTVDLLTESATIEGSITYEGAQMVGADEAELRRVRGNDISFIFQEPMTSLNPLHTLEKQLTESIELHQGLRGDAVRERIIELLTQVGIHDPETRLGSYPHQLSGGQRQRVMIAMALANGPELLIADEPTTALDVTIQAQILDLLAELKRDVGMSMLFITHDLTIVRKIADRVCVMKDGEIVEHGPTAEIFENPQHPYTKTLLAAESGGRPAPVPVEADTVVETDSLRIWFPIQRGLLKRTVGHVKAVNSATLDVRAGETLGVVGESGSGKTTLALAIMRLLQSEGRISFRNSDIHTLSQRQMRPLRSDMQIVFQDPFGSLSPRMTVEQIIAEGLTVHQVDPDRKPRELVGEIMSEVGLDPDLMDRYPHEFSGGQRQRIAIARAMILRPKLVILDEPTSALDMTVQVQIVELLRDLQEKYGLAYLFISHDLKVVRALSHKVMVMKQGDVVEAGTAEEIFDAPQTDYTKTLMAAAFEGRAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PQ68</accession>
    <name>A0A1M5PQ68_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">2-keto-3-deoxy-phosphogalactonate aldolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1753</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the KHG/KDPG aldolase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03423.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900559.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1753"/>
    <dbReference type="EnsemblBacteria" id="SHH03423">
        <property type="protein sequence ID" value="SHH03423"/>
        <property type="gene ID" value="SAMN05444003_1753"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00452">
        <property type="entry name" value="KDPG_aldolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000887">
        <property type="entry name" value="Aldlse_KDPG_KHG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30246">
        <property type="entry name" value="PTHR30246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01081">
        <property type="entry name" value="Aldolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH03423.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="201" mass="20463" checksum="59D51EBF8BAD0AF8" modified="2017-03-15" version="1">MSRPLIAILRGITPPEAAPIAEALIDAGIDRIEVPLNSPDPFDSIKAVSDAFGTDALIGAGTVLSTDDVGRVAQAGGKLIVSPNCDQRVIVATKTAGMQSWPGVMTPTECFAALKAGADGLKIFPASLLGPDGIKAIRAVLPEGTQVFAVGGAGAENFAEWMAATADGFGIGSSLYKAGFSVEEVASRAKDMVGAYDEAAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PQY2</accession>
    <name>A0A1M5PQY2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1785</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04026.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900585.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH04026">
        <property type="protein sequence ID" value="SHH04026"/>
        <property type="gene ID" value="SAMN05444003_1785"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009913003" evidence="2">
        <location>
            <begin position="23"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="38"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="69"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="103"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH04026.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="136" mass="14327" checksum="0F7A76AA8EB96E34" modified="2017-03-15" version="1">MGPIRRRLILAFLTLIPSQAFAQACEVLRPGWDGEPVTALGEAIALFSTPPSLLLLIATAFVVRLKSMWGGLAVVVGWAAWISILDSPAVFPDNAAAAIEGCIGPDTLFIALAIAICALIVIFTSPRRAADKNGEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PRK5</accession>
    <name>A0A1M5PRK5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Cobalt-precorrin 5A hydrolase / precorrin-3B C17-methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_1801</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; adenosylcobalamin biosynthesis.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04340.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900600.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1801"/>
    <dbReference type="EnsemblBacteria" id="SHH04340">
        <property type="protein sequence ID" value="SHH04340"/>
        <property type="gene ID" value="SAMN05444003_1801"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00148"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd11646">
        <property type="entry name" value="Precorrin_3B_C17_MT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1010.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000878">
        <property type="entry name" value="4pyrrol_Mease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035996">
        <property type="entry name" value="4pyrrol_Methylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014777">
        <property type="entry name" value="4pyrrole_Mease_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014776">
        <property type="entry name" value="4pyrrole_Mease_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021744">
        <property type="entry name" value="CbiG_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006363">
        <property type="entry name" value="Cbl_synth_CobJ/CibH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002750">
        <property type="entry name" value="CobE/GbiG_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036518">
        <property type="entry name" value="CobE/GbiG_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038029">
        <property type="entry name" value="GbiG_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01890">
        <property type="entry name" value="CbiG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11760">
        <property type="entry name" value="CbiG_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00590">
        <property type="entry name" value="TP_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF159664">
        <property type="entry name" value="SSF159664"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF159672">
        <property type="entry name" value="SSF159672"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53790">
        <property type="entry name" value="SSF53790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01466">
        <property type="entry name" value="cobJ_cbiH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 8" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="CbiG_N" evidence="7">
        <location>
            <begin position="49"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="domain" description="CbiG_C" evidence="6">
        <location>
            <begin position="210"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="domain" description="TP_methylase" evidence="5">
        <location>
            <begin position="345"/>
            <end position="560"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01890"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF11760"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH04340.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="605" mass="63497" checksum="40F134EA6BA45EF5" modified="2017-03-15" version="1">MALNPVVLALSRSGEDVAHRVAAAIGAQVHGREGRVERADAFFANALDHARDLFAAGRPIVGVCASGILIRGVAPLLSDKTTEPPVVSVSDDGSVVVPLLGGHRGANRLAKEIAEVLGGAAAVTTAGDVSLGIALDEPPLGWSVGTPDLAKQTMAELLDGKAARLTGAEAEGADWLQALPQAEGEAGVEIAATMAPAVEGVMTFHPQRATLGVGCSRNCPPEELAELVNRMIAEAEMDPKALHSINTVDLKADEPAILDLAARLGVPLRFFSAAELEQQVGRVQNPSEVVFEEIGTHSVAEAAALSQSGDNTLWFAKQKTANATCAIGIAPQPLVELQGQARGRLSIVGIGPGQSSWRTPEVSKLVSEAEELVGYGLYIDLLGPLAGGKTRTDFPLGGEEDRCRYALEEAAKGKNVALVCSGDAGIYAMGALVFELMDRDEDVLGVSQAAKAVDVVCSPGVSALQGAAARSGAPLGHDFCAISLSDLLTPREDIVKRLTAAADGDFVIAFYNPVSKRRRTLLAEAREILLQHRPAETPVLLASSLGRPEEYIRYRRLDELDVDEVDMLTVVLVGSSHSRLAHLGTGPRMYTPRGYARKIDGDLAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PSX7</accession>
    <name>A0A1M5PSX7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1836</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05047.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH05047">
        <property type="protein sequence ID" value="SHH05047"/>
        <property type="gene ID" value="SAMN05444003_1836"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012590092" evidence="1">
        <location>
            <begin position="23"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH05047.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="109" mass="11248" checksum="4B385E4C49858B6E" modified="2017-03-15" version="1">MSIKMIALAAATVAATTTAASADNYFAFGDRLENSSTLELGTIRAAADGVVEIYDGRFGDLGALLGTEEVMAGANSDVRVNVGHGPDADVIAVLKVDGQIVAQQEYEVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PTH7</accession>
    <name>A0A1M5PTH7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1842</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1842"/>
    <dbReference type="EnsemblBacteria" id="SHH05175">
        <property type="protein sequence ID" value="SHH05175"/>
        <property type="gene ID" value="SAMN05444003_1842"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="36"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="64"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH05175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="90" mass="8226" checksum="FC50961863611FA1" modified="2017-03-15" version="1">MGTMELIIQLIAGAVGGNAIGAAGKSMSLGTAGNTVVGALGGLGGSQLLGMIGATAASAGGIDIMGLLGSAGGGAILTAIIGLIKNKAMS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PUR2</accession>
    <name>A0A1M5PUR2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Thiol-disulfide interchange protein, contains DsbC and DsbD domains</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1861</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05558.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1861"/>
    <dbReference type="EnsemblBacteria" id="SHH05558">
        <property type="protein sequence ID" value="SHH05558"/>
        <property type="gene ID" value="SAMN05444003_1861"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028250">
        <property type="entry name" value="DsbDN"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11412">
        <property type="entry name" value="DsbC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012838726" evidence="1">
        <location>
            <begin position="20"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="domain" description="DsbC" evidence="2">
        <location>
            <begin position="37"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF11412"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH05558.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="265" mass="27897" checksum="5A9A42E8D014D8E9" modified="2017-03-15" version="1">MKKLALTILVSCLATTAISQNMDEIADLEVLPGWRTADGSHMAGLRITLAPGWKTYWRAPGDGGIPMQFNLTGSENLDGAEFRWPTPEVFYQSGLRSVGYTDGVVIPMVISPDDRSDDISVSGQVTIGVCEEICVPMTFDVTAILPPQGQRDGSIVAALVDRPETAQEAGVTAATCRLVPTNNGFEITTQVSMPGLRGNEEVVIETADPSVWVSEPDVSISGGQITAVSDLVPMGTGGFALDRSGVRITILGNGRAIDVQGCTGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PWB1</accession>
    <name>A0A1M5PWB1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Molybdopterin guanine dinucleotide biosynthesis accessory protein MobB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1892</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900678.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1892"/>
    <dbReference type="EnsemblBacteria" id="SHH06175">
        <property type="protein sequence ID" value="SHH06175"/>
        <property type="gene ID" value="SAMN05444003_1892"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004435">
        <property type="entry name" value="MobB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03205">
        <property type="entry name" value="MobB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00176">
        <property type="entry name" value="mobB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MobB" evidence="1">
        <location>
            <begin position="4"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH06175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="163" mass="17842" checksum="4F43980F134FC425" modified="2017-03-15" version="1">MNVYGVVGYKNAGKTGLMERLVVEMVSRGLSVSTVKHAHHTFDVDQPGKDSYRHRVAGASQTLLSSGNRWALLSELRGAPEPSLQELLAQLAPVDLVLVEGYKRDGHPKIEAYREETGHPLICSEDESVRAVAADFELECPVPLFDLNDTKAIADFILTDLGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PXI9</accession>
    <name>A0A1M5PXI9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1904</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06416.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900689.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH06416">
        <property type="protein sequence ID" value="SHH06416"/>
        <property type="gene ID" value="SAMN05444003_1904"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.150.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001343">
        <property type="entry name" value="Hemolysn_Ca-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011049">
        <property type="entry name" value="Serralysin-like_metalloprot_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00353">
        <property type="entry name" value="HemolysinCabind"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51120">
        <property type="entry name" value="SSF51120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="24"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH06416.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="272" mass="28268" checksum="CF096C9BB874F8DB" modified="2017-03-15" version="1">MIDPTVIGALLLLGLGFLAFGGDGNEETEEDTSEDTLDESARFSGLSPQDDIKTFVRFDDEDDVADLGDGKQVAFGESGNDQIAGGAGDDEIFLAFGNDKSFIDEDLDGLPDDPVTGAMGDDFIRGGDGNDILIDGEGSNEIFGDLKSDFIDVTENDPSATDAADTAYGGFGADTLVGDDGDILYGGDNEDSFFVELDGSSDDPVTIGDYEAGEEITVMVPADTTVTEASATVNESGTGLNVTMDGELILTVEGITDLDDLNLAFEATLPSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q2F3</accession>
    <name>A0A1M5Q2F3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 13">Chaperone protein ClpB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="primary">clpB</name>
        <name evidence="15" type="ORF">SAMN05444003_1996</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase activity; ATP hydrolysis unfolds the denatured protein aggregates, which probably helps expose new hydrophobic binding sites on the surface of ClpB-bound aggregates, contributing to the solubilization and refolding of denatured protein aggregates by DnaK.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Homohexamer. The oligomerization is ATP-dependent.</text>
    </comment>
    <comment type="subunit">
        <text evidence="13">Homohexamer; The oligomerization is ATP-dependent.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 13">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 12">Belongs to the ClpA/ClpB family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08086.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900758.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1996"/>
    <dbReference type="EnsemblBacteria" id="SHH08086">
        <property type="protein sequence ID" value="SHH08086"/>
        <property type="gene ID" value="SAMN05444003_1996"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042026">
        <property type="term" value="P:protein refolding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009408">
        <property type="term" value="P:response to heat"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1780.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017730">
        <property type="entry name" value="Chaperonin_ClpB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019489">
        <property type="entry name" value="Clp_ATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036628">
        <property type="entry name" value="Clp_N_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004176">
        <property type="entry name" value="Clp_R_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001270">
        <property type="entry name" value="ClpA/B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018368">
        <property type="entry name" value="ClpA/B_CS1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028299">
        <property type="entry name" value="ClpA/B_CS2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041546">
        <property type="entry name" value="ClpA/ClpB_AAA_lid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07724">
        <property type="entry name" value="AAA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17871">
        <property type="entry name" value="AAA_lid_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02861">
        <property type="entry name" value="Clp_N"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10431">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00300">
        <property type="entry name" value="CLPPROTEASEA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM01086">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81923">
        <property type="entry name" value="SSF81923"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03346">
        <property type="entry name" value="chaperone_ClpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51903">
        <property type="entry name" value="CLP_R"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00870">
        <property type="entry name" value="CLPAB_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00871">
        <property type="entry name" value="CLPAB_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 12 15" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8 12" id="KW-0143">Chaperone</keyword>
    <keyword evidence="7 13" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="13" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="15" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 12" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="15" id="KW-0645">Protease</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 11" id="KW-0677">Repeat</keyword>
    <keyword evidence="13" id="KW-0346">Stress response</keyword>
    <feature type="domain" description="Clp R" evidence="14">
        <location>
            <begin position="3"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="13">
        <location>
            <begin position="412"/>
            <end position="492"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008675"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00017574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00025613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00026057"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU004432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU362034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS51903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="SHH08086.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="870" mass="95496" checksum="FAAE161EDBB1066D" modified="2017-03-15" version="1">MNLDKFTERSRGFIQAAQTIAMRENNQSLMPEHLLKALMDDEEGLSANLITKSAGDAASVRQSVDVAVARLPKVTGASGQIYMDAATGRVLAEAEKLASKASDSFVPVERLLTALAVVKSKAKEALVAGMVTAKGLNSAINELRKGRTADSATAEDSFDALNKYARDLTEAAEQGKIDPIIGRDEEIRRSMQVLSRRTKNNPVLIGEPGVGKTAIAEGLALRIVNGDVPESLRNKKLMSLDMGALIAGAKYRGEFEERLKAILKEIEAAAGEIILFIDEMHQLVGAGKTDGAMDAANLIKPALARGELHCIGATTLDEYRKYVEKDAALARRFQALIVEEPTVVDTISILRGIKEKYELHHGVRISDSALVSAATLSHRYITDRFLPDKAIDLMDEAASRLRMEVDSKPEELDALDRQIMQLQIEQEALKKEDDKASKDRLLKLDEELANLQDRATEMTAKWEAERAKLEGSRELKEQLDRARAELDIAKREGNLAKAGELSYGVIPDLERKLSEAEDNDDLMVEEAVRPEQIADVVERWTGIPTSKMLEGEREKLLRMEEELGKRVIGQKAAVTSVSNAVRRARAGLNDENRPLGSFLFLGPTGVGKTELTKAVAEYLFDDDSAMVRIDMSEFMEKHAVARLIGAPPGYVGYDEGGVLTEAVRRRPYQVVLFDEVEKAHPDVFNVLLQVLDDGVLTDGQGRTVDFKQTLIILTSNLGAQALSQLPDGADASDAKRDVMDAVRAHFRPEFLNRLDETVIFDRLVREDMAGIVAIQLRRLTDRLASRHITLDLDDGAMTWLADEGYDPVFGARPLKRVIQRALQDQLAEMILAGDVLDGSTVSVSAGADGLIVGDRLSVSNKPKPDDAIVH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q7K1</accession>
    <name>A0A1M5Q7K1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2081</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900836.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2081"/>
    <dbReference type="EnsemblBacteria" id="SHH09761">
        <property type="protein sequence ID" value="SHH09761"/>
        <property type="gene ID" value="SAMN05444003_2081"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.225.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001303">
        <property type="entry name" value="Aldolase_II/adducin_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036409">
        <property type="entry name" value="Aldolase_II/adducin_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00596">
        <property type="entry name" value="Aldolase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01007">
        <property type="entry name" value="Aldolase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53639">
        <property type="entry name" value="SSF53639"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldolase_II" evidence="1">
        <location>
            <begin position="16"/>
            <end position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH09761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="250" mass="28489" checksum="0FA649BE155A1955" modified="2017-03-15" version="1">MNTIAHHNMTHYAERTDLAAAFRWTARMNLHEGVANHFSFAINNDGTQFLMNPNQMHFSRIKASDLITVDANDPDTLKEPDAPDPTAWGLHGGIHRLVPHARCAMHVHSIHATVLTSLKDSRLPPIDQNCCTFFNRYVIDEDYGGLAFEEEGERCATLFTDPKKRVMIMGNHGILIIGETIAETFNRLYYFERACETYIRALQTGQPLRVIPDDIAEKTARELEEYPEQDQRHLAELRAILDEEGSDYAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QGQ9</accession>
    <name>A0A1M5QGQ9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Putative spermidine/putrescine transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2114</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH13345.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2114"/>
    <dbReference type="EnsemblBacteria" id="SHH13345">
        <property type="protein sequence ID" value="SHH13345"/>
        <property type="gene ID" value="SAMN05444003_2114"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="40"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="102"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="134"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="179"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="240"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="283"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="96"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH13345.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="314" mass="35159" checksum="9432C846134F2EBF" modified="2017-03-15" version="1">MERVHRSLSDARRRALALRHTETLGQTAGAGLRNNTVIGWLLAAPLALVLVVFLVLPIVMIVVVSFWGATEWSIYPAFLFDNYEFLLTSDVTYRVFFNTFKYAAITWAFTLLIGFTVAYYLAFHIRSLTWQIALFLLCTIPFLTSNIIRMISWIPFLGRNGIANSTLISMGVIDEPLEWLLFSDFSVVLAFVHLYTLFMVVPIFNTMMRIDKSLIEAAVDAGATGWQTLRHVIIPLTKPGIMIGTIFVVALVMGDFITVRFMSGSQSANMGRLIQNDIALLQYPSASATAVILLVTVLILIGTLLRLVDIRKEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QIX7</accession>
    <name>A0A1M5QIX7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2138</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH13821.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900943.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH13821">
        <property type="protein sequence ID" value="SHH13821"/>
        <property type="gene ID" value="SAMN05444003_2138"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="31"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH13821.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="79" mass="8064" checksum="EA9D39F39CB15BD0" modified="2017-03-15" version="1">MNSIKNFLAVSFGIVVAVILAPFVALFGLMMLGLTFGLALIAAGTVTAVVKEAEKEAQNVAADVEAEAETVVTGNEVPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QMW3</accession>
    <name>A0A1M5QMW3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 4">Protein GrpE</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">HSP-70 cofactor</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">grpE</name>
        <name evidence="7" type="ORF">SAMN05444003_2215</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 4">Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3 5">Belongs to the GrpE family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15425.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901067.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2215"/>
    <dbReference type="EnsemblBacteria" id="SHH15425">
        <property type="protein sequence ID" value="SHH15425"/>
        <property type="gene ID" value="SAMN05444003_2215"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000774">
        <property type="term" value="F:adenyl-nucleotide exchange factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051087">
        <property type="term" value="F:chaperone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042803">
        <property type="term" value="F:protein homodimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00446">
        <property type="entry name" value="GrpE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.22.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.20.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01151">
        <property type="entry name" value="GrpE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000740">
        <property type="entry name" value="GrpE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013805">
        <property type="entry name" value="GrpE_coiled_coil"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009012">
        <property type="entry name" value="GrpE_head"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21237">
        <property type="entry name" value="PTHR21237"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01025">
        <property type="entry name" value="GrpE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00773">
        <property type="entry name" value="GRPEPROTEIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51064">
        <property type="entry name" value="SSF51064"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF58014">
        <property type="entry name" value="SSF58014"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01071">
        <property type="entry name" value="GRPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 4" id="KW-0143">Chaperone</keyword>
    <keyword evidence="6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0346">Stress response</keyword>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="11"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU000639"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU004478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH15425.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="184" mass="20498" checksum="77E5629F26A8B931" modified="2017-03-15" version="1">MNEQDAEPMSLDELAAEADEMEAAGEGAFEEIAALEAERDEFKDKFMRALADAENMRKRADRDRREAENYGGSKLARDLLPVYDNMRRALKSKDEVEGDANAALLEGVELTMRELLNVFKKHGIEPIVPEVGDKFDPQFHQAMFEAPVPGTKTGDILEIMAEGFMLHDRLLRPAQVGVSSMPAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QN66</accession>
    <name>A0A1M5QN66_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Chromosome partitioning protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2221</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15544.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2221"/>
    <dbReference type="EnsemblBacteria" id="SHH15544">
        <property type="protein sequence ID" value="SHH15544"/>
        <property type="gene ID" value="SAMN05444003_2221"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025669">
        <property type="entry name" value="AAA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13614">
        <property type="entry name" value="AAA_31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_31" evidence="1">
        <location>
            <begin position="10"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH15544.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="271" mass="29634" checksum="44952785F95AD67B" modified="2017-03-15" version="1">MNRSTSRRAKIISVANQKGGVGKTTTSINLTAALAEIGKKTLLIDLDPQGNASTGLGISQSDRTITTYDFLAGEVSPGAAIQKTQFENVYIIPANTDLSSADIKLISNEKRSFLLRDALHQLSMDVFEFDYILIDCPPSLNILTVNALVASDSVLVPLQSEFFALEGLSQLMLSVRDVRETANPNLRIEGVVLTMYDIRNNLSQQVEQDARDNLRDLVFKTVIPRNVRLSEAPSFAMPVLSYDSASKGSQAYRLLAQELDQRQNPVGGKNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QNI4</accession>
    <name>A0A1M5QNI4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Nucleoside triphosphate pyrophosphatase</fullName>
            <ecNumber evidence="3">3.6.1.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Nucleotide pyrophosphatase</fullName>
            <shortName evidence="3">Nucleotide PPase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2227</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>a 2'-deoxyribonucleoside 5'-triphosphate + H2O = a 2'-deoxyribonucleoside 5'-phosphate + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:44644"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:65317"/>
            <dbReference type="EC" id="3.6.1.9"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>a ribonucleoside 5'-triphosphate + H2O = a ribonucleoside 5'-phosphate + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:23996"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58043"/>
            <dbReference type="ChEBI" id="CHEBI:61557"/>
            <dbReference type="EC" id="3.6.1.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the Maf family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.9" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15657.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901086.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2227"/>
    <dbReference type="EnsemblBacteria" id="SHH15657">
        <property type="protein sequence ID" value="SHH15657"/>
        <property type="gene ID" value="SAMN05444003_2227"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036218">
        <property type="term" value="F:dTTP diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035529">
        <property type="term" value="F:NADH pyrophosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009117">
        <property type="term" value="P:nucleotide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00555">
        <property type="entry name" value="Maf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00528">
        <property type="entry name" value="Maf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029001">
        <property type="entry name" value="ITPase-like_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003697">
        <property type="entry name" value="Maf-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43213">
        <property type="entry name" value="PTHR43213"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02545">
        <property type="entry name" value="Maf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006305">
        <property type="entry name" value="Maf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52972">
        <property type="entry name" value="SSF52972"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00172">
        <property type="entry name" value="maf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 3" id="KW-0546">Nucleotide metabolism</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="3">
        <location>
            <position position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH15657.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="198" mass="21920" checksum="688E62820BD48C76" modified="2017-03-15" version="1">MSRLILASGSEIRASLLRNAGVTFDVSVARVDEQAIKQSLVSEGANARDLADALAEVKARKISQKNPTSLVLGCDQVLDHSGTFLSKATSPEEAVCQLSELSGSQHNLLSAAVLYDDGKPLWRFVGKVRLTMRQLSEDYIRAYVDRNWDEIQYCVGCYQLEHEGIRLFSRVEGDYFHVLGLPLIEVLNHLTLIGEIEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QTC6</accession>
    <name>A0A1M5QTC6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">UDP-galactopyranose mutase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2294</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UDP-galactopyranose/dTDP-fucopyranose mutase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901185.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2294"/>
    <dbReference type="EnsemblBacteria" id="SHH16969">
        <property type="protein sequence ID" value="SHH16969"/>
        <property type="gene ID" value="SAMN05444003_2294"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008767">
        <property type="term" value="F:UDP-galactopyranose mutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004379">
        <property type="entry name" value="UDP-GALP_mutase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015899">
        <property type="entry name" value="UDP-GalPyranose_mutase_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03275">
        <property type="entry name" value="GLF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00031">
        <property type="entry name" value="UDP-GALP_mutase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GLF" evidence="4">
        <location>
            <begin position="149"/>
            <end position="347"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF03275"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH16969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="382" mass="43768" checksum="4382D1A2C4E5DAD2" modified="2017-03-15" version="1">MSKSPVIVGAGFSGAVIAREFAEAGHDVRVIEARSHVAGNCYTERDAETGVLLHVYGPHIFHTANEDIWNYVTRWGSFMPYSHRVQTTVGEKVFSLPINLLTINQFFNKAFRPDEARAFVAEQADGTIIDPQSFEDQALSMVGPDLYEAFFKGYTEKQWGCSPTELPASILKRLPLRFNYDDSYFNHPFQGIPEHGYTPIVESILDHPRIDVQLNTVFDPKDTDDAHVFWSGPLDGYFDHKLGRLGYRTLDFHHFREEGDWQGTPVMNYGLRDVPYTRITEHKHFAPWEEHEKTLCTREYSRECGPDDIPYYPIRLVDEKAMLSEYVDLARATENVTFIGRLGTYRYLDMDVCIKEALDVAETYLTAHSEGRPIPTFVHDPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QYS5</accession>
    <name>A0A1M5QYS5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">3-vinyl bacteriochlorophyllide hydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2393</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19028.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2393"/>
    <dbReference type="EnsemblBacteria" id="SHH19028">
        <property type="protein sequence ID" value="SHH19028"/>
        <property type="gene ID" value="SAMN05444003_2393"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016836">
        <property type="term" value="F:hydro-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030494">
        <property type="term" value="P:bacteriochlorophyll biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019685">
        <property type="term" value="P:photosynthesis, dark reaction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009905">
        <property type="entry name" value="BCHF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07284">
        <property type="entry name" value="BCHF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02020">
        <property type="entry name" value="BchF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="71"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="111"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="137"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH19028.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="170" mass="19180" checksum="9FF2E154370B20EB" modified="2017-03-15" version="1">MTIMSDQPKAVAAAPRRVSEPLYTPEQRQRRDATVWTLVQGILAPLQFVVFLVSLGLVLRYMATGVGYDAATWSIVIKTAILLTIMVTGAIWEKVVFGQYLFAPSFFWEDVFSFAVIALHLLYIFGLWFELFSPDQLMLIALAAYAAYVINAGQFLWKLRQARLQAEVPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R0P2</accession>
    <name>A0A1M5R0P2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cytochrome c biogenesis protein CcdA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2419</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19539.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901384.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH19539">
        <property type="protein sequence ID" value="SHH19539"/>
        <property type="gene ID" value="SAMN05444003_2419"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017004">
        <property type="term" value="P:cytochrome complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003834">
        <property type="entry name" value="Cyt_c_assmbl_TM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02683">
        <property type="entry name" value="DsbD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="39"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="69"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="121"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="152"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="198"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="domain" description="DsbD" evidence="2">
        <location>
            <begin position="7"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH19539.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="237" mass="25000" checksum="2CCB74E0D3AA29BA" modified="2017-03-15" version="1">MDLILGYLAGLLTLINPCVLPVLPIVLATALQAGRTGPLVLVAGMSLSFVVVGMTVAVFGRAIGIDDQTIAQAGAVLMIVFGVVLLVPRFAESFATAMAGMSARADAGLDEIDRTGLKGQFFGGVLLGAVWVPCVGPTLGGAIALASSGEDLLWAAMTMLSFALGISTIIVLLAYGAQNAIQSRKDWMRSMSSKARPAMGIIFILVGIGLLFNLHKHAEIWLLDRLPYWLQDLSVRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RAK8</accession>
    <name>A0A1M5RAK8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 14">Adenine DNA glycosylase</fullName>
            <ecNumber evidence="4 14">3.2.2.31</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">SAMN05444003_2478</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Adenine glycosylase active on G-A mispairs. MutY also corrects error-prone DNA synthesis past GO lesions which are due to the oxidatively damaged form of guanine: 7,8-dihydro-8-oxoguanine (8-oxo-dGTP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 14">
            <text>Hydrolyzes free adenine bases from 7,8-dihydro-8-oxoguanine:adenine mismatched double-stranded DNA, leaving an apurinic site.</text>
            <dbReference type="EC" id="3.2.2.31"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="14">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="14">Binds 1 [4Fe-4S] cluster.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 14">Belongs to the Nth/MutY family.</text>
    </comment>
    <dbReference type="EC" id="3.2.2.31" evidence="4 14"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23355.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901550.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2478"/>
    <dbReference type="EnsemblBacteria" id="SHH23355">
        <property type="protein sequence ID" value="SHH23355"/>
        <property type="gene ID" value="SAMN05444003_2478"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000701">
        <property type="term" value="F:purine-specific mismatch base pair DNA N-glycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006284">
        <property type="term" value="P:base-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03431">
        <property type="entry name" value="DNA_Glycosylase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00056">
        <property type="entry name" value="ENDO3c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1670.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005760">
        <property type="entry name" value="A/G_AdeGlyc_MutY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011257">
        <property type="entry name" value="DNA_glycosylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004036">
        <property type="entry name" value="Endonuclease-III-like_CS2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003651">
        <property type="entry name" value="Endonuclease3_FeS-loop_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004035">
        <property type="entry name" value="Endouclease-III_FeS-bd_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003265">
        <property type="entry name" value="HhH-GPD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023170">
        <property type="entry name" value="HhH_base_excis_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000445">
        <property type="entry name" value="HhH_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044298">
        <property type="entry name" value="MIG/MutY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029119">
        <property type="entry name" value="MutY_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42944">
        <property type="entry name" value="PTHR42944"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10576">
        <property type="entry name" value="EndIII_4Fe-2S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00633">
        <property type="entry name" value="HHH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00730">
        <property type="entry name" value="HhH-GPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14815">
        <property type="entry name" value="NUDIX_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00478">
        <property type="entry name" value="ENDO3c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48150">
        <property type="entry name" value="SSF48150"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01084">
        <property type="entry name" value="mutY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00764">
        <property type="entry name" value="ENDONUCLEASE_III_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01155">
        <property type="entry name" value="ENDONUCLEASE_III_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="8 14" id="KW-0227">DNA damage</keyword>
    <keyword evidence="12" id="KW-0234">DNA repair</keyword>
    <keyword evidence="13 14" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="10 14" id="KW-0408">Iron</keyword>
    <keyword evidence="11" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ENDO3c" evidence="15">
        <location>
            <begin position="45"/>
            <end position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000843"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008343"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU365096"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="SMART" id="SM00478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="SHH23355.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="350" mass="39083" checksum="10BF642B896B73AF" modified="2017-03-15" version="1">MRDQTAELLSWYDTHARVMPWRVGPSERKKGIRPNPYHVWMSEIMLQQTTVKAVKDYFVKFIRLWPTVQDLAAAEDADVMAAWAGLGYYARARNLLKCARVVVADYGGEFPADHAELLKLPGIGPYTAAAVSAIAFDLPETVLDGNVERVMARKHNVQTPLPTAKPELMTLAESYTPNERPGDYAQAVMDLGATICTPKNPACGICAWRDDCQGRLAGTAAELPRKLPKKAKPIRLGIAYVARREDGAWLLETRPEKGLLGGMLGWPGSEWNEDPSLNPPLDLEWSELREEARHTFTHFHLRLKIMVGWAPSDAKPTMGHFIPHTEFAPSALPTVMRKVFDLAHVTLRPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RB98</accession>
    <name>A0A1M5RB98_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2490</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23614.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901569.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2490"/>
    <dbReference type="EnsemblBacteria" id="SHH23614">
        <property type="protein sequence ID" value="SHH23614"/>
        <property type="gene ID" value="SAMN05444003_2490"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.260">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004792">
        <property type="entry name" value="BaiN-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022460">
        <property type="entry name" value="Flavoprotein_PP4765"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023166">
        <property type="entry name" value="HI0933-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42887">
        <property type="entry name" value="PTHR42887"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03862">
        <property type="entry name" value="flavo_PP4765"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00275">
        <property type="entry name" value="TIGR00275"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH23614.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="386" mass="41262" checksum="20BCE52D229BCFEE" modified="2017-03-15" version="1">MLRQKSALIIGGGPAGLMAAEELSTAGIAVTIADAMPSIGRKFLMAGKSGLNLTKSEDYDSFLAAYGDANQTLEKAIQAFGPDDVVSWAEDLGQATFTGSTGRVFPKAMKASPLLRAWIARVGPTILTRHRWVGFDGDAALFETPEGPKAIAADTTILAMGGGSWARLGSDGRWADQFEGLMTPFRPSNCGFIVDWSPHMTKHLGTPIKGTKLTSGALTSRGEWVISERGIEGGGVYTVSREMRDGHSLTVDLLPDRNVDEIRLALSKARSKDSLTTTLRKVLKLDPAKIALFSEFGRPFPDDIAPLLKFLPIQHLGPRPIDEAISTAGGLRFDALTDDLMLKSRPGVFCAGEMLDWDAPTGGYLLTACFATGRMAGRAAVSYLKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RBS9</accession>
    <name>A0A1M5RBS9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Methyltransferase</fullName>
            <ecNumber evidence="7">2.1.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_2474</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 2'-deoxyadenosine in DNA + S-adenosyl-L-methionine = an N(6)-methyl-2'-deoxyadenosine in DNA + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:15197"/>
            <dbReference type="Rhea" id="RHEA-COMP:12418"/>
            <dbReference type="Rhea" id="RHEA-COMP:12419"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:90615"/>
            <dbReference type="ChEBI" id="CHEBI:90616"/>
            <dbReference type="EC" id="2.1.1.72"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the N(4)/N(6)-methyltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.-" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23273.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901544.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2474"/>
    <dbReference type="EnsemblBacteria" id="SHH23273">
        <property type="protein sequence ID" value="SHH23273"/>
        <property type="gene ID" value="SAMN05444003_2474"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008170">
        <property type="term" value="F:N-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009007">
        <property type="term" value="F:site-specific DNA-methyltransferase (adenine-specific) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002941">
        <property type="entry name" value="DNA_methylase_N4/N6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002052">
        <property type="entry name" value="DNA_methylase_N6_adenine_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040843">
        <property type="entry name" value="RAMA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001091">
        <property type="entry name" value="RM_Methyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01555">
        <property type="entry name" value="N6_N4_Mtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18755">
        <property type="entry name" value="RAMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00508">
        <property type="entry name" value="S21N4MTFRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00092">
        <property type="entry name" value="N6_MTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3 10" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N6_N4_Mtase" evidence="8">
        <location>
            <begin position="35"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="domain" description="RAMA" evidence="9">
        <location>
            <begin position="267"/>
            <end position="367"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001279"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU362026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF18755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH23273.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="370" mass="41952" checksum="D36F9131C67EE46F" modified="2017-03-15" version="1">MVTKTKAAKAATLPLNQILDGDCIEVMNSLPAESIDLIFADPPYNLQLRGDLHRPDNSKVDAVDNDWDQFDSFKIYDRFTKDWLAAARRLLKPNGAIWVIGSYHNVFRMGAELQNQGFWILNDVVWRKSNPMPNFRGKRFTNAHETMIWASKQEASKYTFNYEALKALNEGVQMRSDWVLPICTGHERLKDENGDKAHPTQKPESLLHRVLVGSTNPGDVILDPFFGTGTTGAVAKMLGRDFIGIEREEAYRKVATKRLSKIRKFDKEALEVTQSKRAEPRVAFGVLVERGMLRPGEELWSQNGRHKAKVRADGTLIGDDIKGSIHQVGAHLEGAPSCNGWTYWQFKRDGQKVPIDLLRQQIRAEMAQQH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RFB5</accession>
    <name>A0A1M5RFB5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA helicase</fullName>
            <ecNumber evidence="3">3.6.4.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">SAMN05444003_2543</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.12"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the helicase family. RecQ subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.12" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24699.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901651.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2543"/>
    <dbReference type="EnsemblBacteria" id="SHH24699">
        <property type="protein sequence ID" value="SHH24699"/>
        <property type="gene ID" value="SAMN05444003_2543"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043138">
        <property type="term" value="F:3'-5' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009432">
        <property type="term" value="P:SOS response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004589">
        <property type="entry name" value="DNA_helicase_ATP-dep_RecQ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006293">
        <property type="entry name" value="DNA_helicase_ATP-dep_RecQ_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010997">
        <property type="entry name" value="HRDC-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002121">
        <property type="entry name" value="HRDC_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044876">
        <property type="entry name" value="HRDC_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032284">
        <property type="entry name" value="RecQ_Zn-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001763">
        <property type="entry name" value="Rhodanese-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018982">
        <property type="entry name" value="RQC_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00570">
        <property type="entry name" value="HRDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16124">
        <property type="entry name" value="RecQ_Zn_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09382">
        <property type="entry name" value="RQC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00341">
        <property type="entry name" value="HRDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00956">
        <property type="entry name" value="RQC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47819">
        <property type="entry name" value="SSF47819"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01389">
        <property type="entry name" value="recQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00614">
        <property type="entry name" value="recQ_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50967">
        <property type="entry name" value="HRDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50206">
        <property type="entry name" value="RHODANESE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6 13" id="KW-0347">Helicase</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="11">
        <location>
            <begin position="24"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="12">
        <location>
            <begin position="213"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="domain" description="Rhodanese" evidence="9">
        <location>
            <begin position="230"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="domain" description="HRDC" evidence="10">
        <location>
            <begin position="519"/>
            <end position="599"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001665"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHH24699.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="678" mass="74665" checksum="5C9F5F900ADDF9B1" modified="2017-03-15" version="1">MTALQLLSDVFGFDDFLPGQGEIVEAVCAGRDTLAIMPTGGGKSLCFQLPALARDGVTVVISPLIALMRDQVRGLQEAGVEAGALTSGNTQEETDYVWQRLEAGTLKLLYMAPERLASGSIAQMLHRANVSLIAVDEAHCVSQWGHDFRPDYLRIGELRAALDVPLVALTATADAETRDEIIAKLFASRKVEVFLRGFDRPNIHLAFAAKDQPRQQTLNFATARKGQSGIVYCGTRAKTETLARALAEAGHSTCHYHGGMEAEDRREVERRFQQEDGLIVCATVAFGMGIDKPDIRWVAHADLPKSIEAYYQEIGRAGRDGAPAETLTLFGPDDIRYRRQQIDEGLAPPERRDADHGRLNALLGLAEALSCRRQSLLRYFGEEAEPCGHCDLCEKPPEVFDGTQPVRMALSAALRTDERFGAGHLIDILRGTSTDKVRERGHDALPTFGVGKEYDKRQWQVIFRQMMGHDLLRPDAERHGALVMTDKALPLLRNEAQIELRLDTVRTAKTGPKVRMMVSEDDAPLLSALKAKRRFFAERMNAPAYIIFNDRTLIEMAEKKPRNLDEMAQIGGVGAKKLESYGKAFLEVIAGAQEDMHPARRKLAGRGEGAVYDQLLAVQAELARGEDGTGKPMTCSASMLAKVASLRNADLQAVTRLIGEKYSERFGQAFVDVLVENA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RGR5</accession>
    <name>A0A1M5RGR5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2579</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25431.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901703.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH25431">
        <property type="protein sequence ID" value="SHH25431"/>
        <property type="gene ID" value="SAMN05444003_2579"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH25431.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="245" mass="28277" checksum="E7E1E9F2226EFF0D" modified="2017-03-15" version="1">MALTINGIPFDGDPQTDWLDPTFISTNSVATAKRRNFYIWNCRTQKGTSRLRLDQDGKLTVPNLVEFHVDTFGAFGTPDPTATLLMKAKVLKALKFRGVNDLITVSHRAFGKHKIKVDASGFDWLKPIASYRLWLQINFHFFKFTNAKQRMHFFIGLPHSADLAVEIIEFCQPDQLESSLENGKSVEPIDLGVFENGKPGSKELRRRYLREKIRQLNAALLTEMLHQELLRRERDRYQRELEALE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RLN2</accession>
    <name>A0A1M5RLN2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Hypoxia induced protein conserved region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2660</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH27232.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901832.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2660"/>
    <dbReference type="EnsemblBacteria" id="SHH27232">
        <property type="protein sequence ID" value="SHH27232"/>
        <property type="gene ID" value="SAMN05444003_2660"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007667">
        <property type="entry name" value="Hypoxia_induced_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04588">
        <property type="entry name" value="HIG_1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51503">
        <property type="entry name" value="HIG1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="45"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="domain" description="HIG1" evidence="2">
        <location>
            <begin position="1"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51503"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH27232.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="67" mass="7592" checksum="84313DB9DA8FC9FD" modified="2017-03-15" version="1">MRDDPLFYLVLFAVLIVAGILLLGIGTFGRGGEFNKKYANKIMRWRIGAQFIAVVLILFYVWVRGGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RLQ8</accession>
    <name>A0A1M5RLQ8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphocarrier protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2653</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH27066.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901823.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2653"/>
    <dbReference type="EnsemblBacteria" id="SHH27066">
        <property type="protein sequence ID" value="SHH27066"/>
        <property type="gene ID" value="SAMN05444003_2653"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00367">
        <property type="entry name" value="PTS-HPr_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1340.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000032">
        <property type="entry name" value="HPr-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035895">
        <property type="entry name" value="HPr-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001020">
        <property type="entry name" value="PTS_HPr_His_P_site"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00381">
        <property type="entry name" value="PTS-HPr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00107">
        <property type="entry name" value="PHOSPHOCPHPR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55594">
        <property type="entry name" value="SSF55594"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01003">
        <property type="entry name" value="PTS_HPr_family"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51350">
        <property type="entry name" value="PTS_HPR_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00369">
        <property type="entry name" value="PTS_HPR_HIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HPr" evidence="1">
        <location>
            <begin position="1"/>
            <end position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH27066.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="89" mass="9408" checksum="8123F47F646F0596" modified="2017-03-15" version="1">MAELKLEIQNIKGLHARASAKLVEVVEMYDASATISKDGMEADGDSIMGLLMLAATIGTHIEVETSGAQADELAVALTDLVNDKFGEDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RNK4</accession>
    <name>A0A1M5RNK4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2683</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH27749.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH27749">
        <property type="protein sequence ID" value="SHH27749"/>
        <property type="gene ID" value="SAMN05444003_2683"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012793506" evidence="1">
        <location>
            <begin position="27"/>
            <end position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH27749.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="194" mass="19954" checksum="78E4387694FEAEFC" modified="2017-03-15" version="1">MFRSLVIVPFAALAACASPTPPSVSATDIAAADAERQRISLLPDVAGTDLPTSSVDYSGNFLSNNLMIDGEGGYGVLGDLAMTIDFGGSNRVSGSVRNLNLTERGAPDQLLGGRLDIRGSSSGGDIVARASGELDAVNDLLPFRGTTNVEFAMTGGTRQDGNDTAVFGTWVGASTSVDDDFFVTGSGTFFGTED</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RW95</accession>
    <name>A0A1M5RW95_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">5-deoxyglucuronate isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2720</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30318.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901973.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2720"/>
    <dbReference type="EnsemblBacteria" id="SHH30318">
        <property type="protein sequence ID" value="SHH30318"/>
        <property type="gene ID" value="SAMN05444003_2720"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008880">
        <property type="term" value="F:glucuronate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019310">
        <property type="term" value="P:inositol catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024203">
        <property type="entry name" value="Deoxy-glucuronate_isom_IolB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021120">
        <property type="entry name" value="KduI/IolB_isomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39193">
        <property type="entry name" value="PTHR39193"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04962">
        <property type="entry name" value="KduI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036628">
        <property type="entry name" value="IolB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH30318.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="280" mass="31125" checksum="DADD948FC87A3E0B" modified="2017-03-15" version="1">MHIPPFDNQNKPIVDVDDTTVPLNYFNIVKLTKGEAFTYEVPRYETCIVPATGTVDVNVEGFKADALGGRGEDVWDGEPEGVYVPTAAKAEMVCTSDEAEVFVAGALYEKVLDAFAVRNDELDLVQYGSDETKTHRKIKHILGTKYHGKVGRLLVSELFTVGEGGWSGFPSHKHDTDRLPDETRHDETYNFRFKPNYGSGVQMLQREDGKAGDAYHIVDGSTICLDSGYHPCAVLPGYQMYYFTILGGLSQRSLVQYFQPSHAAQLETIPGIKDMIAKFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RXS2</accession>
    <name>A0A1M5RXS2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Ribosome maturation factor RimM</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">rimM</name>
        <name evidence="5" type="ORF">SAMN05444003_2750</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Binds ribosomal protein S19.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="2">The PRC barrel domain binds ribosomal protein S19.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the RimM family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30999.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902022.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2750"/>
    <dbReference type="EnsemblBacteria" id="SHH30999">
        <property type="protein sequence ID" value="SHH30999"/>
        <property type="gene ID" value="SAMN05444003_2750"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043022">
        <property type="term" value="F:ribosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042274">
        <property type="term" value="P:ribosomal small subunit biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006364">
        <property type="term" value="P:rRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00014">
        <property type="entry name" value="Ribosome_mat_RimM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011961">
        <property type="entry name" value="16S_RimM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027275">
        <property type="entry name" value="PRC-brl_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011033">
        <property type="entry name" value="PRC_barrel-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002676">
        <property type="entry name" value="RimM_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036976">
        <property type="entry name" value="RimM_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05239">
        <property type="entry name" value="PRC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01782">
        <property type="entry name" value="RimM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50346">
        <property type="entry name" value="SSF50346"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02273">
        <property type="entry name" value="16S_RimM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0143">Chaperone</keyword>
    <keyword evidence="1 2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0690">Ribosome biogenesis</keyword>
    <feature type="domain" description="RimM" evidence="3">
        <location>
            <begin position="7"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="domain" description="PRC" evidence="4">
        <location>
            <begin position="93"/>
            <end position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF05239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH30999.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="167" mass="18031" checksum="3B3B29C1FE4A52B7" modified="2017-03-15" version="1">MNERIIVGSIGGAFGVHGEIRLKSFCAEPEAIADYTPLYTDDGRSFAQLILTGGLKGGFTARLDGVISKEDADALRNNKLFADRSQMPSLPDDEYYYTDLIGLDVLDTGGEKLGTVKNVMDHGAGDLLEIQTPNSSETVLVPFTQVAVPTVDLKARRIIVDPPEGLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RYS3</accession>
    <name>A0A1M5RYS3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, ArsR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2759</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31188.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2759"/>
    <dbReference type="EnsemblBacteria" id="SHH31188">
        <property type="protein sequence ID" value="SHH31188"/>
        <property type="gene ID" value="SAMN05444003_2759"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001845">
        <property type="entry name" value="HTH_ArsR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00778">
        <property type="entry name" value="HTHARSR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00418">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50987">
        <property type="entry name" value="HTH_ARSR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH arsR-type" evidence="1">
        <location>
            <begin position="10"/>
            <end position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH31188.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="120" mass="13514" checksum="F1A6D983C793140E" modified="2017-03-15" version="1">MVDDYRLRCLMSPMDAQLDIVFAALSDATRRRILSMLLEDDMAVTDVAEPFDISLAAISKHLAVLTSAGLISQEKRGRVKWCKLEPDALRDASTWMKAFGQMDAIDLDAFEKFLDQELSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S0Z4</accession>
    <name>A0A1M5S0Z4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Glycolate oxidase iron-sulfur subunit</fullName>
            <ecNumber evidence="4">1.1.99.14</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2781</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Component of a complex that catalyzes the oxidation of glycolate to glyoxylate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>(R)-lactate + A = AH2 + pyruvate</text>
            <dbReference type="Rhea" id="RHEA:15089"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:16004"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>A + glycolate = AH2 + glyoxylate</text>
            <dbReference type="Rhea" id="RHEA:21264"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:29805"/>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
            <dbReference type="EC" id="1.1.99.14"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="4">Binds 2 [4Fe-4S] clusters.</text>
    </comment>
    <dbReference type="EC" id="1.1.99.14" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31693.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902069.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2781"/>
    <dbReference type="EnsemblBacteria" id="SHH31693">
        <property type="protein sequence ID" value="SHH31693"/>
        <property type="gene ID" value="SAMN05444003_2781"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1060.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004017">
        <property type="entry name" value="Cys_rich_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012257">
        <property type="entry name" value="Glc_ox_4Fe-4S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009051">
        <property type="entry name" value="Helical_ferredxn"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32479:SF17">
        <property type="entry name" value="PTHR32479:SF17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02754">
        <property type="entry name" value="CCG"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12838">
        <property type="entry name" value="Fer4_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000139">
        <property type="entry name" value="Glc_ox_4Fe-4S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="4" id="KW-0249">Electron transport</keyword>
    <keyword evidence="2 4" id="KW-0408">Iron</keyword>
    <keyword evidence="3 4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="6">
        <location>
            <begin position="14"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="6">
        <location>
            <begin position="67"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="418"/>
            <end position="439"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR000139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH31693.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="439" mass="48121" checksum="1C26CE8A59292942" modified="2017-03-15" version="1">MQTNFTPEQLTNPGTARANEVLRACVHCGFCTATCPTYQVLGDELDSPRGRIYLMKDMLENEREPDAKTVKHIDRCLSCLACMSTCPSGVHYMHLVDHARAYIEERYQRPFMDRALRWTLAQILPYPNRFRLALLAAKIGRPFKGLMPDPRLRAMLDMAPKQIPPVSANDEPQVFEAPAKKMRVALMTGCAQKALNTDINDATIRLLTRLGAEVVVAEGAGCCGALTHHMGKEDQSHASAAANIKAWQKEINNGGLDAIVINTSGCGTTVKDYGHMFRNDPFAEEAAEVSKLAMDISEVLMKLDLPEGESKNMKVAYHAACSLQHGQQIKTHPKTLLKKSGFTVLEPADPHLCCGSAGTYNLMQPEISGQLKERKVQTLEALTPDVISAGNIGCMMQIGSGTDTPIVHTVELLDWATGGPKPRAMDPDTTRPGFIPILR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S1P2</accession>
    <name>A0A1M5S1P2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">WYL domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2792</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902081.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2792"/>
    <dbReference type="EnsemblBacteria" id="SHH31953">
        <property type="protein sequence ID" value="SHH31953"/>
        <property type="gene ID" value="SAMN05444003_2792"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001034">
        <property type="entry name" value="DeoR_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013196">
        <property type="entry name" value="HTH_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026881">
        <property type="entry name" value="WYL_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08279">
        <property type="entry name" value="HTH_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13280">
        <property type="entry name" value="WYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51000">
        <property type="entry name" value="HTH_DEOR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH deoR-type" evidence="3">
        <location>
            <begin position="3"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51000"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH31953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="230" mass="26347" checksum="A1676911CEECCE75" modified="2017-03-15" version="1">MRRADRLFQILQFLRGGRLVTAAQLAERLEVTPRTIYRDIAHLIGSGVPLDGEAGVGYLMRDGYDLPPLMFSHDEIVALVSAARLMQAWGGSKMAAAAEEALVKIDAVLPEDARVRSGQVHVHAFEVRYGRQNWRDHLDLIEDAAERGIRLDMSYADAEGRSTRRIIRPLGVWFWGKVWTAIAWCELREAFRMFRLDRITDLQDAGRFKPEKGKTLKDFYEAEAYRDFHQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S2V1</accession>
    <name>A0A1M5S2V1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2825</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32770.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH32770">
        <property type="protein sequence ID" value="SHH32770"/>
        <property type="gene ID" value="SAMN05444003_2825"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="8"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH32770.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="297" mass="32495" checksum="BEC2F3CB1E745205" modified="2017-03-15" version="1">MDWTAAKFDWNRARAFLVTAEEGSLSAAARALGLAQPTLSRQVEAFQTELGVVLFERFGRGLELTPAGASLLEHVRKMGEGAVALSIAAQGQSDDLSGPVTISASDAYAGLWLPPILARLREQEPGLAIKIVAENSASDLMRREADIAIRNFRPKEPELVAKKISDTHAGLFASEAYVAKHGIIENAEDWKDASLIVPGNVDEYLKVLQSLGLPVTSKAVTFECTSFLAMWEMVRQGLGIGILDVRLGQNEKGIVPATQDDLPMNFPIWLVAHRDILSNARLRFVFDFLSDQLRKKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S372</accession>
    <name>A0A1M5S372_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1 2">Xylulose kinase</fullName>
            <shortName evidence="1 2">Xylulokinase</shortName>
            <ecNumber evidence="1 2">2.7.1.17</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1 2" type="primary">xylB</name>
        <name evidence="5" type="ORF">SAMN05444003_2811</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the phosphorylation of D-xylulose to D-xylulose 5-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 2">
            <text>ATP + D-xylulose = ADP + D-xylulose 5-phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:10964"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17140"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57737"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.17"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the FGGY kinase family.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.17" evidence="1 2"/>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32413.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902108.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2811"/>
    <dbReference type="EnsemblBacteria" id="SHH32413">
        <property type="protein sequence ID" value="SHH32413"/>
        <property type="gene ID" value="SAMN05444003_2811"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004856">
        <property type="term" value="F:xylulokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042732">
        <property type="term" value="P:D-xylose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005998">
        <property type="term" value="P:xylulose catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02220">
        <property type="entry name" value="XylB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000577">
        <property type="entry name" value="Carb_kinase_FGGY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018485">
        <property type="entry name" value="Carb_kinase_FGGY_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018484">
        <property type="entry name" value="Carb_kinase_FGGY_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006000">
        <property type="entry name" value="Xylulokinase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02782">
        <property type="entry name" value="FGGY_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00370">
        <property type="entry name" value="FGGY_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000538">
        <property type="entry name" value="GlpK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01312">
        <property type="entry name" value="XylB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 2" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="1 2 5" id="KW-0418">Kinase</keyword>
    <keyword evidence="1 2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0808">Transferase</keyword>
    <keyword evidence="1 2" id="KW-0859">Xylose metabolism</keyword>
    <feature type="domain" description="FGGY_N" evidence="3">
        <location>
            <begin position="3"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="domain" description="FGGY_C" evidence="4">
        <location>
            <begin position="250"/>
            <end position="433"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="1">
        <location>
            <begin position="78"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="233"/>
        </location>
    </feature>
    <feature type="site" description="Important for activity" evidence="1">
        <location>
            <position position="7"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02220"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU364073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH32413.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="478" mass="50813" checksum="1E6F0D4C7203F345" modified="2017-03-15" version="1">MTYIGLDLGTSSLKAILIDDRQNVLAEHSVSLTVQRLQDGWSEQDPSSWCKAAVEALSSLAAQADCSGLRGIGLSGHMHGATLIGTDDQPLRPCMLWNDTRSHLEAAQMDAEPAFREISGNIVFPGFTAPKVEWVRINEPEVFQKIHKVMLPKDFLRLFLTGEYVSEMSDAAGTTWLDTGERDWSDELLRRCHLDRSHMPSLVEGSEVSGRLRASLAEHLGIPPVVIAGGAGDNAAAAIGAGVVRNGEAFLSLGTSGVLFAANDGYRPDPATAVHTFCHAVPNTWHQMGVILAATDALEWLSRLTGKTAAELTAPLGDLRAPTKAMFLPYLGGERTPHNDAAIRGQFLNLDHATDATEAARAVFQGVCFAFADCQDALAATGTTIESALALGGGSKSEHWLNMLATTLGITLELPEAGDFGAALGAARLGMMANGDFGQDVASKPPIAKTFTPDTALADAMKDGHAAYKHAYSLLKDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S3Y6</accession>
    <name>A0A1M5S3Y6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2821</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32663.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902122.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH32663">
        <property type="protein sequence ID" value="SHH32663"/>
        <property type="gene ID" value="SAMN05444003_2821"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH32663.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="202" mass="23024" checksum="B62AE326C141C55E" modified="2017-03-15" version="1">MKKTNKFDHRDVLKSLVQVRGDLSLMEQEFAIEAQIQRETADWVPMWVDLENSVRSERVGATAYRAITDEGDLLWYVRRDGKKKGYHSPASTATEAFADAESCWSTRRAIKQNWRRLEVLQNELLSGRKSLDVTVEDARKGGLCVMGIEGFMKRFGISRRKHISGRFAALLMKFEPQVGFAIYNAASTKEFLPKVFEESVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SE80</accession>
    <name>A0A1M5SE80_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Deoxyribodipyrimidine photo-lyase family protein (Cryptochrome)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2919</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>(6R)-5,10-methylene-5,6,7,8-tetrahydrofolate</name>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36745.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902533.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2919"/>
    <dbReference type="EnsemblBacteria" id="SHH36745">
        <property type="protein sequence ID" value="SHH36745"/>
        <property type="gene ID" value="SAMN05444003_2919"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036134">
        <property type="entry name" value="Crypto/Photolyase_FAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036155">
        <property type="entry name" value="Crypto/Photolyase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005101">
        <property type="entry name" value="Cryptochr/Photolyase_FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002081">
        <property type="entry name" value="Cryptochrome/DNA_photolyase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006050">
        <property type="entry name" value="DNA_photolyase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11455">
        <property type="entry name" value="PTHR11455"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00875">
        <property type="entry name" value="DNA_photolyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03441">
        <property type="entry name" value="FAD_binding_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48173">
        <property type="entry name" value="SSF48173"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52425">
        <property type="entry name" value="SSF52425"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51645">
        <property type="entry name" value="PHR_CRY_ALPHA_BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="7" id="KW-0456">Lyase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Photolyase/cryptochrome alpha/beta" evidence="6">
        <location>
            <begin position="1"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="467"/>
            <end position="504"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="5">
        <location>
            <begin position="476"/>
            <end position="491"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH36745.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="504" mass="57406" checksum="4A38BBDDD7A58346" modified="2017-03-15" version="1">MQIVWFKRDLRIQDNRALACAAQRGPVLPLYVVEPELWAQPDMSARQWAFIAESLTELADDLAQLGQPLIIHTGDVCDVLAELARTFGITYLWSHEETGNDWTFQRDKRVAQWCRANGIQWHEVQNHGVQRKLASRNGWADGWDRFMAEPVETVAAIKPVTNDPAVIPSLPLPPDQCPHRQLGGRSNGLERLESFLTQRGEHYRSEMSSPLEGATSCSRLSPHLAWGTLSMREVTQTTWQRQRDLIASPTPTGGWRKSMTSFNGRLHWHCHFIQKLEDDPKIEFENFHPAYNGIRPSEPDQTRLTAWENGETGLPFLDACMRCLRATGWLNFRMRAMVMATASYHLWLHWRDPGLALARMFTDYEPGIHWSQVQMQSGTTGINTVRIYNPVKQGYDQDPTGAFTRRWVPELAHLDDKILQEPWLSDDAGHILGCSYPEPIIDHKAAAKAAREKIWAVRKGDGFRAEADHIQNKHGSRKSGVRHRGQRPKKKSATKGAQLSFGFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SHF0</accession>
    <name>A0A1M5SHF0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">L-ascorbate metabolism protein UlaG, beta-lactamase superfamily</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2976</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38022.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2976"/>
    <dbReference type="EnsemblBacteria" id="SHH38022">
        <property type="protein sequence ID" value="SHH38022"/>
        <property type="gene ID" value="SAMN05444003_2976"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027033">
        <property type="entry name" value="Cnh"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46522">
        <property type="entry name" value="PTHR46522"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH38022.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="445" mass="50652" checksum="F97A9207100BF3CD" modified="2017-03-15" version="1">MKSEIEFINHASVLISQGDVHLLSDPWYAGAAFHDGWRLLVEHEDDVVAALLKRVTHIWVSHEHPDHFSVLFFKRFGEQIRIQGIKILFQNTRDRRVAKFFEAQGFDLTELPFNTPVQLSDDYAVTCIKDGFIDSGLFIETAGEKILNLNDCEVNTQQRADEIKRLTGDVEVLLTQFSYAAWKGGAANRSWRLEAAEEKLDAVALQTKTFAPRVVIPFASYVYFSNAMNGCLNDGANHPKEVLERFKDAPFETVVMAPFDRFSGAWSAADQENAVNFWQAQFEDAATREPATYDSVPWDELAQDYVSYVGRVRTTNNTWIMGFFRRFKPFRAFAPIAVKLLDYDKTVLVDFENATLVETDKPADLEMQSASLQFLFKNGFGFDTLMVNGCFEERSTGGFVRATKTFGVDNLNNIGLKVAFSTMFNVHLIKMILTRLYRVARKLEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SIX6</accession>
    <name>A0A1M5SIX6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 11">Uracil phosphoribosyltransferase</fullName>
            <ecNumber evidence="3 11">2.4.2.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10 11">UMP pyrophosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">UPRTase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">upp</name>
        <name evidence="12" type="ORF">SAMN05444003_2997</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Catalyzes the conversion of uracil and 5-phospho-alpha-D-ribose 1-diphosphate (PRPP) to UMP and diphosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>diphosphate + UMP = 5-phospho-alpha-D-ribose 1-diphosphate + uracil</text>
            <dbReference type="Rhea" id="RHEA:13017"/>
            <dbReference type="ChEBI" id="CHEBI:17568"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="EC" id="2.4.2.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="11">Binds 1 Mg(2+) ion per subunit. The magnesium is bound as Mg-PRPP.</text>
    </comment>
    <comment type="activity regulation">
        <text evidence="11">Allosterically activated by GTP.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 11">Pyrimidine metabolism; UMP biosynthesis via salvage pathway; UMP from uracil: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the UPRTase family.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.9" evidence="3 11"/>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38486.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902436.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2997"/>
    <dbReference type="EnsemblBacteria" id="SHH38486">
        <property type="protein sequence ID" value="SHH38486"/>
        <property type="gene ID" value="SAMN05444003_2997"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00574">
        <property type="reaction ID" value="UER00636"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004845">
        <property type="term" value="F:uracil phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044206">
        <property type="term" value="P:UMP salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006223">
        <property type="term" value="P:uracil salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01218_B">
        <property type="entry name" value="Upp_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034332">
        <property type="entry name" value="Upp_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005765">
        <property type="entry name" value="Ura_phspho_trans"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01091">
        <property type="entry name" value="upp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 11" id="KW-0021">Allosteric enzyme</keyword>
    <keyword evidence="5 11 12" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="9 11" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="8 11" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 11 12" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="5-phospho-alpha-D-ribose 1-diphosphate binding" evidence="11">
        <location>
            <begin position="132"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="region of interest" description="Uracil binding" evidence="11">
        <location>
            <begin position="200"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="80"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="105"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="195"/>
        </location>
        <ligand>
            <name>uracil</name>
            <dbReference type="ChEBI" id="CHEBI:17568"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="201"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00031082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01218"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHH38486.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="210" mass="22945" checksum="7D05A1096EA410A5" modified="2017-03-15" version="1">MTEHVTHVTHPLVQHKLSLMRKTDTSTGEFRQLLREISQLLAYEITRELPMTTKRIDTPLEAMDAPALAGKKLALVSILRAGNGLLDGILELIPSARVGFVGLYRNEETLEPVEYYFKVPTELSERLVIAVDPMLATGNSSVAAIQKLKDAGATNIRFMCLLAAPEGIARMKEAHPDVPIVTAAIDSHLNENGYIVPGLGDAGDRMFGTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SJL9</accession>
    <name>A0A1M5SJL9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3002</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38590.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902443.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH38590">
        <property type="protein sequence ID" value="SHH38590"/>
        <property type="gene ID" value="SAMN05444003_3002"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="44"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="76"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="102"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="132"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH38590.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="160" mass="17743" checksum="5D6A8F27BA90AD1F" modified="2017-03-15" version="1">MIARTLSILSTPYALIGLVGLLLAAVALSVGWQGVVLSPNIQFAWQSVTGVGLLSTMIYQWYLLRKRWIGDMTRRDVVIHRWAGVAAVILFGLHAARLGHTWMMAITVLFILIGITGILNKEVMRYKTRGAYLTWFSIHIGLSVAIAPLIAVHVWVALSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SLH3</accession>
    <name>A0A1M5SLH3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Translation initiation factor IF-1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">infA</name>
        <name evidence="5" type="ORF">SAMN05444003_3038</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Component of the 30S ribosomal translation pre-initiation complex which assembles on the 30S ribosome in the order IF-2 and IF-3, IF-1 and N-formylmethionyl-tRNA(fMet); mRNA recruitment can occur at any time during PIC assembly.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the IF-1 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH39381.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_010137880.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3038"/>
    <dbReference type="EnsemblBacteria" id="SHH39381">
        <property type="protein sequence ID" value="SHH39381"/>
        <property type="gene ID" value="SAMN05444003_3038"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043022">
        <property type="term" value="F:ribosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04451">
        <property type="entry name" value="S1_IF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00075">
        <property type="entry name" value="IF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006196">
        <property type="entry name" value="RNA-binding_domain_S1_IF1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022967">
        <property type="entry name" value="S1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004368">
        <property type="entry name" value="TIF_IF1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33370">
        <property type="entry name" value="PTHR33370"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01176">
        <property type="entry name" value="eIF-1a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00316">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00008">
        <property type="entry name" value="infA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50832">
        <property type="entry name" value="S1_IF1_TYPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 2 3" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="2 3" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="S1-like" evidence="4">
        <location>
            <begin position="1"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH39381.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="72" mass="8298" checksum="C2C7629DBBFB9E4F" modified="2017-03-15" version="1">MAKEDILEFPGVVKELLPNATFRVELENGHEIIAHTAGKMRKNRIRVLAGDKVQVEMTPYDLTKGRINYRFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SM78</accession>
    <name>A0A1M5SM78_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">5'-nucleotidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_3020</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the 5'-nucleotidase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH39023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902465.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3020"/>
    <dbReference type="EnsemblBacteria" id="SHH39023">
        <property type="protein sequence ID" value="SHH39023"/>
        <property type="gene ID" value="SAMN05444003_3020"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0110165">
        <property type="term" value="C:cellular anatomical entity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008252">
        <property type="term" value="F:nucleotidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009166">
        <property type="term" value="P:nucleotide catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.780.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008334">
        <property type="entry name" value="5'-Nucleotdase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036907">
        <property type="entry name" value="5'-Nucleotdase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006146">
        <property type="entry name" value="5'-Nucleotdase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006179">
        <property type="entry name" value="5_nucleotidase/apyrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004843">
        <property type="entry name" value="Calcineurin-like_PHP_ApaH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11575">
        <property type="entry name" value="PTHR11575"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02872">
        <property type="entry name" value="5_nucleotid_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00149">
        <property type="entry name" value="Metallophos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01607">
        <property type="entry name" value="APYRASEFAMLY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55816">
        <property type="entry name" value="SSF55816"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00785">
        <property type="entry name" value="5_NUCLEOTIDASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00786">
        <property type="entry name" value="5_NUCLEOTIDASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5011812311" evidence="2">
        <location>
            <begin position="20"/>
            <end position="520"/>
        </location>
    </feature>
    <feature type="domain" description="Metallophos" evidence="3">
        <location>
            <begin position="26"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="domain" description="5_nucleotid_C" evidence="4">
        <location>
            <begin position="327"/>
            <end position="483"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006654"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362119"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02872"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH39023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="520" mass="54600" checksum="A5044759F6CF6682" modified="2017-03-15" version="1">MIKRILTTASALSMTAGMAAADFSLNVIHINDLHSRIEPINRFDSTCNAEDNAEGKCFGGYARVKTMIDQLRAELADENVIVLDAGDQYQGSLMYTTYKGDVEAEMAEIVGFDAMAVGNHEFDDGDEGLAKLADAVSFPVISGNIDVSQSNILAGKVDNHTVLEVGGKKIGIISALASDTVETSSPSDAVIFTDEIESLQADVAALEAEGVDIIIALTHVGVTKDMEIAEQVAGIDAVVGGHSHTLMSNTEEGAMAYPTMVGNVPVVQAYAYSKYVGHLKLEFDDAGNVTSASGDTIVLDASVAEDEAIVARVAELAGPIEEMKTRVVAEAAEAIEGDRSVCRAVECPMGNLVADAMLDRVADQGIQIAIQNGGGLRASIDSGEVTMGEVLTVLPFQNTLSTFEVTGGTIIEALENGVSQVEEGAGRFPQVAGMSFTVDLSAEPGSRITDVMVGDSAINLAAVYGVVSNNYVRNGGDGYSMFEDAANAYDYGPDLADVTAEFLAENGPYQPYTDGRITVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SQS4</accession>
    <name>A0A1M5SQS4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Carbohydrate ABC transporter ATP-binding protein, CUT1 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_3048</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH40872.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902570.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH40872">
        <property type="protein sequence ID" value="SHH40872"/>
        <property type="gene ID" value="SAMN05444003_3048"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008643">
        <property type="term" value="P:carbohydrate transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03301">
        <property type="entry name" value="ABC_MalK_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015855">
        <property type="entry name" value="ABC_transpr_MalK-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="6">
        <location>
            <begin position="4"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="36"/>
            <end position="43"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH40872.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="350" mass="37892" checksum="3270DFF50806CD1D" modified="2017-03-15" version="1">MAEIQLRNVSKRWGSFVGVDNFDLTIADKEFLVLLGPSGCGKTTTMRMIAGLEDPTDGEILIGGNPVNDLEPKDRDIAMVFQSYALYPNMNVYENIRFPLRVRDGGKKADHDAKVMRASAMVELDEFLHRKPAELSGGQRQRVALARAIVREPNAFLMDEPLSNLDAKLRVSTRAQIRNLSHELSVTTIYVTHDQIEAMTLADRVVVMEKGVVQQVGSPTEIYDKPANTFVASFIGNPAMNLIEGNVSNGNFSATSTEVAGVGGSDGKMTLGFRAEDASVVDSGGQINAPIYALELLGDAVMISVRLGGTLVSVRTDKSFRAEIGDTVSISVPTEICHLFDGQTGERIGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-09-29" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SS44</accession>
    <name>A0A1M5SS44_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Oxidored_molyb domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3074</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41349.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902609.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH41349">
        <property type="protein sequence ID" value="SHH41349"/>
        <property type="gene ID" value="SAMN05444003_3074"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000572">
        <property type="entry name" value="OxRdtase_Mopterin-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036374">
        <property type="entry name" value="OxRdtase_Mopterin-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00174">
        <property type="entry name" value="Oxidored_molyb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56524">
        <property type="entry name" value="SSF56524"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012906418" description="Oxidored_molyb domain-containing protein" evidence="1">
        <location>
            <begin position="21"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="domain" description="Oxidored_molyb" evidence="2">
        <location>
            <begin position="31"/>
            <end position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH41349.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="161" mass="17975" checksum="DF22CDD270B8AAED" modified="2017-03-15" version="1">MSIFFKLFAILLVTTGLAIASEDSAEVVLTLRFENRTQEPVEFTLEDLNAFGEDQFSTTTIWTTGPQTFSGVSLKSFLNSLGIENGTILASAINDYTVEIPVSDAVIDGPMIAYRLNGEEMSIRDKGPLWIVYPYDSKSEYQAEVIYSRSIWQLDRIAIVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5STQ0</accession>
    <name>A0A1M5STQ0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, AraC family with amidase-like domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3106</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41919.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902657.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3106"/>
    <dbReference type="EnsemblBacteria" id="SHH41919">
        <property type="protein sequence ID" value="SHH41919"/>
        <property type="gene ID" value="SAMN05444003_3106"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002818">
        <property type="entry name" value="DJ-1/PfpI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018062">
        <property type="entry name" value="HTH_AraC-typ_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01965">
        <property type="entry name" value="DJ-1_PfpI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00041">
        <property type="entry name" value="HTH_ARAC_FAMILY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="2">
        <location>
            <begin position="231"/>
            <end position="329"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH41919.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="332" mass="36143" checksum="26BCADA1A72C0274" modified="2017-03-15" version="1">MGRAEKDIEAAVSELVAVNRFVFLLMPGFSALELGSGIDSLAAANETLGKTFFQWKTVSETGDSIVSSSGLEVAVDSPLPDIQGGDCIVVCCAFNSQNYRKSGKAVAWLRRAARQGVRLCAVGGGALLLARIGIATEGRISAHWRMKPVFEEGYLDLEPSCTIFEETANIVSCGGGAATLDLFSALIRQKAGLETSEQVADHLLCGSLRDGDCRQSNSSPLRLKHRNEKLFKATTYMQDCIEEPVSPSVIASQVGISTRQLERLFSRYLGVSPKTYMMTLRLEKARALLQQTQMRVIDVATACGFSTQSLFSKRYKRHFGISPCNEKAMLAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SUW5</accession>
    <name>A0A1M5SUW5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DNA-binding transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3132</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42351.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902693.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3132"/>
    <dbReference type="EnsemblBacteria" id="SHH42351">
        <property type="protein sequence ID" value="SHH42351"/>
        <property type="gene ID" value="SAMN05444003_3132"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH42351.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="292" mass="31945" checksum="27E63C0D2B13334D" modified="2017-03-15" version="1">MHSYLRHLANFARIVEAGSMKSASEALGISPSGLSDSVKLLENRFGTSLLIRHKLGVTPTTEGERVYASASGIVDLMNEALGPDASDELDQACRISVPTEIANTCFGSVVRYLVKHHPRLSLKIFAEDELIDHSRFARDYFLRIAPTFPQEQELRTVWTGKANAILVASAELISEEDANNIKRISELPAIVDAERSRPFQYRLSNPKGVVTCASAIGVSHPSAQLRLACQGLGVTGCIDLCAAGLIEAGLLRQVLSNRFGVPLEIRLMTPHRRKMRSDAALRDAMNQLEIPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SXX5</accession>
    <name>A0A1M5SXX5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3185</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH43369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902778.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH43369">
        <property type="protein sequence ID" value="SHH43369"/>
        <property type="gene ID" value="SAMN05444003_3185"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025597">
        <property type="entry name" value="DUF4345"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14248">
        <property type="entry name" value="DUF4345"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="59"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="85"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="108"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH43369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="148" mass="15806" checksum="AD4CD8DBBAFF4838" modified="2017-03-15" version="1">MHKTNLLNAVVVIIGAAIIFLGLNIGLGGIKTLGWQSTRDFVAITDAATFQTQDSHIRFIGGVWFAVGAVFVIGGFALRRLRPTLIILSAMIATAGLFRLSGMETEVLFSAAIAPSLTFELVGFPLLAWWLMASGKSDAKIIKGVQSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SY86</accession>
    <name>A0A1M5SY86_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">50S ribosomal protein L14</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rplN</name>
        <name evidence="6" type="ORF">SAMN05444003_3174</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 5">Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L19. In the 70S ribosome, L14 and L19 interact and together make contacts with the 16S rRNA in bridges B5 and B8.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 4">Belongs to the universal ribosomal protein uL14 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH43143.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902763.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3174"/>
    <dbReference type="EnsemblBacteria" id="SHH43143">
        <property type="protein sequence ID" value="SHH43143"/>
        <property type="gene ID" value="SAMN05444003_3174"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.150.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01367">
        <property type="entry name" value="Ribosomal_L14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036853">
        <property type="entry name" value="Ribosomal_L14_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000218">
        <property type="entry name" value="Ribosomal_L14P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005745">
        <property type="entry name" value="Ribosomal_L14P_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019972">
        <property type="entry name" value="Ribosomal_L14P_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11761">
        <property type="entry name" value="PTHR11761"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00238">
        <property type="entry name" value="Ribosomal_L14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01374">
        <property type="entry name" value="Ribosomal_L14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50193">
        <property type="entry name" value="SSF50193"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01067">
        <property type="entry name" value="rplN_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00049">
        <property type="entry name" value="RIBOSOMAL_L14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="1 3 4" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 5" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01367"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003950"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH43143.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="122" mass="13495" checksum="2E8582D5300A3B71" modified="2017-03-15" version="1">MIQMQTNLDVADNSGARRVQCIKVLGGSHRRYASVGDIIVVSVKEAIPRGRVKKGDVRKAVVVRTAKEVRREDGTSIRFDRNAAVILNNNNEPIGTRIFGPVVRELRGKSFMKIISLAPEVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T3G8</accession>
    <name>A0A1M5T3G8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_3219</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45285.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902866.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3219"/>
    <dbReference type="EnsemblBacteria" id="SHH45285">
        <property type="protein sequence ID" value="SHH45285"/>
        <property type="gene ID" value="SAMN05444003_3219"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003995">
        <property type="term" value="F:acyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006089">
        <property type="entry name" value="Acyl-CoA_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00072">
        <property type="entry name" value="ACYL_COA_DH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00073">
        <property type="entry name" value="ACYL_COA_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0274">FAD</keyword>
    <keyword evidence="3 5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="6"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="121"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="233"/>
            <end position="380"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH45285.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="386" mass="43229" checksum="440522829AE19D14" modified="2017-03-15" version="1">MHFGLTSEQDMIVSTVRSFVENEIYPHEAEVERTGHVPKELGDEIKRKCQELGFYACNFPEEVGGAGLSHVDFTLVERELGRGSMALTHFFGRPQNILMACEGEQKEKYLLPAVRGERMDALAMTEPDAGSDVRGMKCQAVRDGGDWVINGSKHFISGAEHADFFIVFIATGVDDTPRGPKKRITTFLVDRGTPGFEVRDGYNSVSHKGYKNCILYFDNCRLPDAQVLGEVDGGFAVMNEWLYATRITVAAFCVGRARRCFDYALNYAAERKQFGQAIGKFQGVSFQIADMITEIDAADWLTFASAWRLDEGLPANREIASAKVYASEMLAKVTDTTLQIFGGMGLMDDFPIERFWRDARVERIWDGTSEIQRHIISRDLLRPLGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TAL8</accession>
    <name>A0A1M5TAL8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">4-hydroxybutyrate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3306</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000009">
        <property type="protein sequence ID" value="SHH47772.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072903019.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000009.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3306"/>
    <dbReference type="EnsemblBacteria" id="SHH47772">
        <property type="protein sequence ID" value="SHH47772"/>
        <property type="gene ID" value="SAMN05444003_3306"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016616">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001670">
        <property type="entry name" value="ADH_Fe/GldA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018211">
        <property type="entry name" value="ADH_Fe_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039697">
        <property type="entry name" value="Alcohol_dehydrogenase_Fe"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11496">
        <property type="entry name" value="PTHR11496"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00465">
        <property type="entry name" value="Fe-ADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00913">
        <property type="entry name" value="ADH_IRON_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00060">
        <property type="entry name" value="ADH_IRON_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fe-ADH" evidence="2">
        <location>
            <begin position="10"/>
            <end position="370"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00465"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH47772.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="381" mass="40021" checksum="114DC83AA4A78AB4" modified="2017-03-15" version="1">MSPTANWSYPTSVRFGAGRITELADACRTAGMSKPLLVTDRGLASLPVTTCALDVLEAGGLGRASFADVDPNPNEKNLAAGVAAFKAGGHDGVVAFGGGSGLDLGKMVAFMAGQTRPVWDFEDVDDWWTRADADAIFPNIAVPTTAGTGSEVGRASVITNSETEEKKIIFHPKVLPSVVICDPELTVGMPSFITAGTGLDAFAHCVEAFSSPHYHPMSQGIALEGMRLVVENLPIAFSEPENLDARAHMMSAAMMGATAFQKGLGAIHALSHPVGAMHHTHHGTTNAVCMPAVLKLNAPAIRGRFDSCVGYLGIEGGFDGFCEFVDQFNNDLGIPKRLSELGVSNPDMDRLVNGALNDPSCGGNPVTLNEGNLRELFEAVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L1N7</accession>
    <name>A0A1M5L1N7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">FAD assembly factor SdhE</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0043</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the SdhE FAD assembly factor family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58840.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898373.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0043"/>
    <dbReference type="EnsemblBacteria" id="SHG58840">
        <property type="protein sequence ID" value="SHG58840"/>
        <property type="gene ID" value="SAMN05444003_0043"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.250">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005631">
        <property type="entry name" value="SDH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036714">
        <property type="entry name" value="SDH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03937">
        <property type="entry name" value="Sdh5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109910">
        <property type="entry name" value="SSF109910"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0143">Chaperone</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00019418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG58840.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="89" mass="10023" checksum="AA953C86DB34D647" modified="2017-03-15" version="1">MEPREVKIKRLAMRSMRRGIKEMDLILSAFAEKNLSALADEDLSLYDQLLSENDHDLYNWVSGQSSAPEAYGNLMAEITKGAHGLTRPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L2W4</accession>
    <name>A0A1M5L2W4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pimeloyl-ACP methyl ester carboxylesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0068</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59336.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898406.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0068"/>
    <dbReference type="EnsemblBacteria" id="SHG59336">
        <property type="protein sequence ID" value="SHG59336"/>
        <property type="gene ID" value="SAMN05444003_0068"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12697">
        <property type="entry name" value="Abhydrolase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00111">
        <property type="entry name" value="ABHYDROLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="48"/>
            <end position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG59336.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="237" mass="26391" checksum="50EFE5615ACBB9D6" modified="2017-03-15" version="1">MAAEPILFIPPILCDARVFGPQIGALSTDHAVMFAPTTQGERMEEIASQILSWAPSKFALVGMSMGGAVALEILRRASERVTRVALVSTTPLAETPQMATAREPHIVAARSGRFHDVIDKEMPLDWLADGPNRLEVGNLVRDMALYQGPEAYVRQARAMQRRKDQQSTLRKVSQPTLILCGDEDSHLPIRRHEFLAEMMPQSKLEIVVGAGHLPSLEQPEIVIDQLRAWMRQPMVLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L3S2</accession>
    <name>A0A1M5L3S2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized conserved protein, tellurite resistance protein B (TerB) family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0089</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59742.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898432.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0089"/>
    <dbReference type="EnsemblBacteria" id="SHG59742">
        <property type="protein sequence ID" value="SHG59742"/>
        <property type="gene ID" value="SAMN05444003_0089"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3680.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007791">
        <property type="entry name" value="DjlA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029024">
        <property type="entry name" value="TerB-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05099">
        <property type="entry name" value="TerB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF158682">
        <property type="entry name" value="SSF158682"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TerB" evidence="1">
        <location>
            <begin position="23"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05099"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG59742.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="144" mass="15872" checksum="2C02055AF8087FC6" modified="2017-03-15" version="1">MFSALLNRLMEPTEPQVADDDARLALGALLVRIARSDDDYAQVEKDQIKAVLAARYGLSDATGLLADCEALEAEAPDTVRFTRAIKDGVAYEDRIGVVEDMWAIVLADGVRDAHENQIMRMVPPMIGVEDQDSNAARRRIETRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L9N2</accession>
    <name>A0A1M5L9N2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA helicase</fullName>
            <ecNumber evidence="3">3.6.4.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_0154</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.12"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the helicase family. UvrD subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.12" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61133.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898513.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0154"/>
    <dbReference type="EnsemblBacteria" id="SHG61133">
        <property type="protein sequence ID" value="SHG61133"/>
        <property type="gene ID" value="SAMN05444003_0154"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013986">
        <property type="entry name" value="DExx_box_DNA_helicase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014017">
        <property type="entry name" value="DNA_helicase_UvrD-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000212">
        <property type="entry name" value="DNA_helicase_UvrD/REP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014016">
        <property type="entry name" value="UvrD-like_ATP-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11070">
        <property type="entry name" value="PTHR11070"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00580">
        <property type="entry name" value="UvrD-helicase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13361">
        <property type="entry name" value="UvrD_C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51198">
        <property type="entry name" value="UVRD_HELICASE_ATP_BIND"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51217">
        <property type="entry name" value="UVRD_HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 9" id="KW-0347">Helicase</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UvrD-like helicase ATP-binding" evidence="7">
        <location>
            <begin position="30"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="domain" description="UvrD-like helicase C-terminal" evidence="8">
        <location>
            <begin position="311"/>
            <end position="585"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="51"/>
            <end position="58"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001665"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51217"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG61133.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="796" mass="88267" checksum="BA0C68F5A3848066" modified="2017-03-15" version="1">MSSMSEDDAFEAAVPLSQQAMTARPAPYLDELNPAQREAVEALDGPVLMLAGAGTGKTKALTSRIAHLLMTGTARPNEILAVTFTNKAAREMKNRVGRFLGEAVEGMPWLGTFHAICVKLLRRHAELVGLKSNFTILDMDDQIRLLKQLIVAANIDEKRWPPRMLSGIIDGWKNKAYTPDTVPVADSGAFDHKGVDLYAAYQTRLKELNACDFGDLLLHMVTIFQTHPDVLEQYQRWFRYILVDEYQDTNVAQYLWLRLLAGGHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFPGAHVVRLEQNYRSTGHILAAAAGVIAANKGRLGKTLYTEGEDGEKVRLIGHWDGEEEARWIGEEVEALQRGTRGLTPYSLDDMAILVRASHQMRAFEDRFLTIGLPYRVIGGPRFYERMEIRDAMAYFRLAVSQDDDLAFERIVNTPKRGLGDKAVQTIQRTARANGVSLVEGARLCVQGKLLGGKGLKELGILVVGLDRWHAQVRAEADTHVELAEMILDESGYTGFWQNDKTPEAPGRLENLKELVKALENFENLQGFLEHVSLIMDNESEDAEEKVSIMTLHAAKGLEFPAVFLPGWEDGLFPSQRSMDESGLKGLEEERRLAYVGITRAEEICTVSFAANRRVYGQWQSSMPSRFIDELPTEHVEVLTPPGLYGGGFGAAGMAASASPSAQGMMGSSLHEEASKADVYNSPGWKRLQARSQQRGMSQPSEARNMTIDLDAVSAFTEGDRVFHQKFGYGEVMGIEGDKLDIEFDKAGSKKVVARFVVSAAQADDIPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LA23</accession>
    <name>A0A1M5LA23_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">Cell division protein FtsZ</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">ftsZ</name>
        <name evidence="9" type="ORF">SAMN05444003_0184</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 5">Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer. Polymerizes to form a dynamic ring structure in a strictly GTP-dependent manner. Interacts directly with several other division proteins.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="4">Assembles at midcell at the inner surface of the cytoplasmic membrane.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4 5">Belongs to the FtsZ family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61858.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898552.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0184"/>
    <dbReference type="EnsemblBacteria" id="SHG61858">
        <property type="protein sequence ID" value="SHG61858"/>
        <property type="gene ID" value="SAMN05444003_0184"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032153">
        <property type="term" value="C:cell division site"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000917">
        <property type="term" value="P:division septum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043093">
        <property type="term" value="P:FtsZ-dependent cytokinesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051258">
        <property type="term" value="P:protein polymerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02201">
        <property type="entry name" value="FtsZ_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1440">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00909">
        <property type="entry name" value="FtsZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000158">
        <property type="entry name" value="Cell_div_FtsZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020805">
        <property type="entry name" value="Cell_div_FtsZ_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045061">
        <property type="entry name" value="FtsZ/CetZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024757">
        <property type="entry name" value="FtsZ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008280">
        <property type="entry name" value="Tub_FtsZ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037103">
        <property type="entry name" value="Tubulin/FtsZ-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018316">
        <property type="entry name" value="Tubulin/FtsZ_2-layer-sand-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036525">
        <property type="entry name" value="Tubulin/FtsZ_GTPase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003008">
        <property type="entry name" value="Tubulin_FtsZ_GTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30314">
        <property type="entry name" value="PTHR30314"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12327">
        <property type="entry name" value="FtsZ_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00091">
        <property type="entry name" value="Tubulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00423">
        <property type="entry name" value="CELLDVISFTSZ"/>
    </dbReference>
    <dbReference type="SMART" id="SM00864">
        <property type="entry name" value="Tubulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00865">
        <property type="entry name" value="Tubulin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52490">
        <property type="entry name" value="SSF52490"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55307">
        <property type="entry name" value="SSF55307"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00065">
        <property type="entry name" value="ftsZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01135">
        <property type="entry name" value="FTSZ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="4 5 9" id="KW-0132">Cell division</keyword>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 4 5" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="2 4 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0717">Septation</keyword>
    <feature type="domain" description="Tubulin" evidence="7">
        <location>
            <begin position="17"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="domain" description="Tubulin_C" evidence="8">
        <location>
            <begin position="211"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="339"/>
            <end position="364"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="447"/>
            <end position="469"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="481"/>
            <end position="524"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="502"/>
            <end position="516"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="25"/>
            <end position="29"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="112"/>
            <end position="114"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="143"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="147"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="191"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00864"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00865"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG61858.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="524" mass="54245" checksum="5007A61C208FA8DF" modified="2017-03-15" version="1">MTLNLSIPGHEEELKPRITVFGVGGAGGNAVNNMIEQQLEGVEFVVANTDAQALQQSQSGAKIQMGVKVTEGLGAGARATVGAAAAEESIEQIVDHLAGAHMCFITAGMGGGTGTGAAPIIAQAARELGVLTVGVVTKPFQFEGGKRMKQAEEGVEALQKVVDTLIIIPNQNLFRLANENTTFTEAFALADDVLYQGVKGVTDLMVRPGLINLDFADVRAVMDEMGKAMMGTGEAEGESRAVQAAEKAIANPLLDEISLEGAKGVLINITGGYDLTLFELDEAANKIREKVDPDANIIVGSTLDTGMEGQMRVSVVATGIDAIAKSSDVPLPRRSMAAPLTPQAAQEEAPVAAPAPAPEEVAATPAPVEAPAAVAAPSTPEPSLFEDMPEPEPYVAEQAAPAVADDLPPPAYQPAPATEAETFVAPSASAPGTPTPEAMARLQAAVNRAPGAQPAAEPAPSVAEGDKPRFGINSLINRMTGTAAPEAPIRQQPPVTPIREEPAAEADPDQERIEIPAFLRRQAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LBQ8</accession>
    <name>A0A1M5LBQ8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Activator of Hsp90 ATPase homolog 1-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0209</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the AHA1 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62471.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898594.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0209"/>
    <dbReference type="EnsemblBacteria" id="SHG62471">
        <property type="protein sequence ID" value="SHG62471"/>
        <property type="gene ID" value="SAMN05444003_0209"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013538">
        <property type="entry name" value="Activator_of_Hsp90_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08327">
        <property type="entry name" value="AHSA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006817"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG62471.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="158" mass="17493" checksum="BE85FC7CE8B16A7E" modified="2017-03-15" version="1">MTQPIEKTLNVPLRPKQAFDLFTKNLDKWWPLDSHSLSAGDGELPKSVDVEMREGGYITETKHDGTTGRWATITKWDEGRALGVSWYVGRSEGEATDLEVIFIPTDTGTRIELTHSGFDRLGDAATATAGNYQTGWDFVLAECFGRYCLTNFVATPSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LBU1</accession>
    <name>A0A1M5LBU1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 12">UDP-3-O-acyl-N-acetylglucosamine deacetylase</fullName>
            <shortName evidence="12">UDP-3-O-acyl-GlcNAc deacetylase</shortName>
            <ecNumber evidence="4 12">3.5.1.108</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="12">UDP-3-O-[R-3-hydroxymyristoyl]-N-acetylglucosamine deacetylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="primary">lpxC</name>
        <name evidence="13" type="ORF">SAMN05444003_0185</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 12">Catalyzes the hydrolysis of UDP-3-O-myristoyl-N-acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11 12">
            <text>a UDP-3-O-[(3R)-3-hydroxyacyl]-N-acetyl-alpha-D-glucosamine + H2O = a UDP-3-O-[(3R)-3-hydroxyacyl]-alpha-D-glucosamine + acetate</text>
            <dbReference type="Rhea" id="RHEA:67816"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:30089"/>
            <dbReference type="ChEBI" id="CHEBI:137740"/>
            <dbReference type="ChEBI" id="CHEBI:173225"/>
            <dbReference type="EC" id="3.5.1.108"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 12">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3 12">Glycolipid biosynthesis; lipid IV(A) biosynthesis; lipid IV(A) from (3R)-3-hydroxytetradecanoyl-[acyl-carrier-protein] and UDP-N-acetyl-alpha-D-glucosamine: step 2/6.</text>
    </comment>
    <comment type="similarity">
        <text evidence="12">Belongs to the LpxC family.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.108" evidence="4 12"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61883.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898555.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0185"/>
    <dbReference type="EnsemblBacteria" id="SHG61883">
        <property type="protein sequence ID" value="SHG61883"/>
        <property type="gene ID" value="SAMN05444003_0185"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00359">
        <property type="reaction ID" value="UER00478"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008759">
        <property type="term" value="F:UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0103117">
        <property type="term" value="F:UDP-3-O-acyl-N-acetylglucosamine deacetylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009245">
        <property type="term" value="P:lipid A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1700.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00388">
        <property type="entry name" value="LpxC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004463">
        <property type="entry name" value="UDP-acyl_GlcNac_deAcase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011334">
        <property type="entry name" value="UDP-acyl_GlcNac_deAcase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015870">
        <property type="entry name" value="UDP-acyl_N-AcGlcN_deAcase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33694">
        <property type="entry name" value="PTHR33694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03331">
        <property type="entry name" value="LpxC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00325">
        <property type="entry name" value="lpxC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 12" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6 12" id="KW-0441">Lipid A biosynthesis</keyword>
    <keyword evidence="5 12" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="10 12" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="7 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 12" id="KW-0862">Zinc</keyword>
    <feature type="active site" description="Proton donor" evidence="12">
        <location>
            <position position="262"/>
        </location>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="78"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="235"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="239"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002923"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012745"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00024535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00388"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHG61883.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="306" mass="32153" checksum="D93594B46DFA620F" modified="2017-03-15" version="1">MQTTLNSTTNFEGLGLHTGKPVSVELRPASPDTGIVFHRVDLADGVAVLPALWDRVTVSPLNTRLCNDDGITVSTIEHVMAALAGCGVHNAIVAVNGPELPIMDGSSAAFVRGILDAGVCETAVPLKAIEILKPVHVEVGDAWASLTPATSLQIDFEIDFADKAIGQQSKTLNLANGTFVRELCDSRTFCRQSDVDAMHANGLALGGSLENAVVVDGDAILTPGGLRHEDEAVRHKMLDALGDLYTAGAPILGRYRGVRSGHAVTNALLRALFADDSAWRWVVCDAQVAARLPGVGVTKADLHAVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LCY2</accession>
    <name>A0A1M5LCY2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B</fullName>
            <shortName evidence="10">Asp/Glu-ADT subunit B</shortName>
            <ecNumber evidence="10">6.3.5.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">gatB</name>
        <name evidence="12" type="ORF">SAMN05444003_0200</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9 10">Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>ATP + H2O + L-aspartyl-tRNA(Asn) + L-glutamine = ADP + 2 H(+) + L-asparaginyl-tRNA(Asn) + L-glutamate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:14513"/>
            <dbReference type="Rhea" id="RHEA-COMP:9674"/>
            <dbReference type="Rhea" id="RHEA-COMP:9677"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:78515"/>
            <dbReference type="ChEBI" id="CHEBI:78516"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 10">
            <text>ATP + H2O + L-glutamine + L-glutamyl-tRNA(Gln) = ADP + H(+) + L-glutamate + L-glutaminyl-tRNA(Gln) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:17521"/>
            <dbReference type="Rhea" id="RHEA-COMP:9681"/>
            <dbReference type="Rhea" id="RHEA-COMP:9684"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:78520"/>
            <dbReference type="ChEBI" id="CHEBI:78521"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="4 10">Heterotrimer of A, B and C subunits.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 10">Belongs to the GatB/GatE family. GatB subfamily.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.-" evidence="10"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62253.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898580.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0200"/>
    <dbReference type="EnsemblBacteria" id="SHG62253">
        <property type="protein sequence ID" value="SHG62253"/>
        <property type="gene ID" value="SAMN05444003_0200"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050566">
        <property type="term" value="F:asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050567">
        <property type="term" value="F:glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.380">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00121">
        <property type="entry name" value="GatB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004413">
        <property type="entry name" value="Apn/Gln-ADT_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017959">
        <property type="entry name" value="Asn/Gln-tRNA_amidoTrfase_suB/E"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006075">
        <property type="entry name" value="Asn/Gln-tRNA_Trfase_suB/E_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018027">
        <property type="entry name" value="Asn/Gln_amidotransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003789">
        <property type="entry name" value="Asn/Gln_tRNA_amidoTrase-B-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042114">
        <property type="entry name" value="GatB_C_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023168">
        <property type="entry name" value="GatB_Yqey_C_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017958">
        <property type="entry name" value="Gln-tRNA_amidoTrfase_suB_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014746">
        <property type="entry name" value="Gln_synth/guanido_kin_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11659">
        <property type="entry name" value="PTHR11659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02934">
        <property type="entry name" value="GatB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02637">
        <property type="entry name" value="GatB_Yqey"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00845">
        <property type="entry name" value="GatB_Yqey"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55931">
        <property type="entry name" value="SSF55931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89095">
        <property type="entry name" value="SSF89095"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00133">
        <property type="entry name" value="gatB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01234">
        <property type="entry name" value="GATB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 10" id="KW-0436">Ligase</keyword>
    <keyword evidence="6 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8 10" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GatB_Yqey" evidence="11">
        <location>
            <begin position="356"/>
            <end position="502"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00000924"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00024799"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG62253.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="504" mass="55188" checksum="2153A9822267C770" modified="2017-03-15" version="1">MLDLTYDAPAPKTIAGATSDWELVIGLEVHAQVATKAKLFSGASTLFGAEPNSNVAFVDAGMPGMLPVINEGCVEQAVRTGLGLKAEINLNSAFDRKNYFYPDLPQGYQISQLYHPIVGEGEVLVEMGDGTARVVRIERIHLEQDAGKSIHDMDPHMSFVDLNRTGVALMEIVSRPDIRGPEEAAAYVGKLRQIMRYLGTCDGNMQNGNLRADVNVSVCKPGDYEKYQETQDFSHLGTRCEIKNMNSMRFIQMAIEVEARRQIALIEDGQEVVQETRLYDPDKNETRSMRSKEEAHDYRYFPDPDLLPLEIEQAWVEDIAASLPELPDAKKSRFMADFGLSDYDASVLTAEAENAAYFEAVAEGRDGKLAANWVINELFGRLKKDDDKGITDSPVTADQLGGIIALIKSGDISGKIAKDLFEIVYTEGGDPAQIVEERGMKQVTDTGAIETALDEIIAANPAQVEKAKVNPKLAGWFVGQVMKATGGKANPAIVNQLIQGKLGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LF83</accession>
    <name>A0A1M5LF83_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Predicted Fe2+/Mn2+ transporter, VIT1/CCC1 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_0260</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63707.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898686.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0260"/>
    <dbReference type="EnsemblBacteria" id="SHG63707">
        <property type="protein sequence ID" value="SHG63707"/>
        <property type="gene ID" value="SAMN05444003_0260"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005384">
        <property type="term" value="F:manganese ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030026">
        <property type="term" value="P:cellular manganese ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008217">
        <property type="entry name" value="Ccc1_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31851">
        <property type="entry name" value="PTHR31851"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01988">
        <property type="entry name" value="VIT1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="22"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="50"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="151"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="178"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="208"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG63707.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="234" mass="23726" checksum="696CD26DD59C5AFC" modified="2017-03-15" version="1">MPETSAHPDDPHYLGRSNWLRAAVLGANNGIVSVSALVVGVAAANPDRNAILIARVAGLAAGAMSMAVSEYVSVSSQSDMERGDIARELRALDEAPEEEFEELIDICIKRGLTPATARTVATELSGKDALAANVREELGLTDELGANPLSAALASGFTFSVAAAIPVVAAFLAPASSIISVVLVATVSALAILGALGAKAGGAPILPAVLWVVSWSVGTMIVTAAIGRLFGVSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LG23</accession>
    <name>A0A1M5LG23_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Assimilatory nitrite reductase (NAD(P)H) small subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_0243</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63333.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898659.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0243"/>
    <dbReference type="EnsemblBacteria" id="SHG63333">
        <property type="protein sequence ID" value="SHG63333"/>
        <property type="gene ID" value="SAMN05444003_0243"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008942">
        <property type="term" value="F:nitrite reductase [NAD(P)H] activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042128">
        <property type="term" value="P:nitrate assimilation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.102.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012748">
        <property type="entry name" value="Rieske-like_NirD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017941">
        <property type="entry name" value="Rieske_2Fe-2S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036922">
        <property type="entry name" value="Rieske_2Fe-2S_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13806">
        <property type="entry name" value="Rieske_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50022">
        <property type="entry name" value="SSF50022"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02378">
        <property type="entry name" value="nirD_assim_sml"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51296">
        <property type="entry name" value="RIESKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0534">Nitrate assimilation</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rieske" evidence="5">
        <location>
            <begin position="4"/>
            <end position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG63333.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="111" mass="11889" checksum="1F8810A32D2AF08E" modified="2017-03-15" version="1">MTNWVDIAALEDVPQRGARMVKTAMGCVAVFRTGEDEVYALDNACPHKAGPLAEGIVHGKSVTCPLHNWVISLETGEAQGEDEGRVATYPAKVEAGRILLDRAFLLARVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LIR3</accession>
    <name>A0A1M5LIR3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FeS assembly SUF system protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0318</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898764.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0318"/>
    <dbReference type="EnsemblBacteria" id="SHG65002">
        <property type="protein sequence ID" value="SHG65002"/>
        <property type="gene ID" value="SAMN05444003_0318"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034904">
        <property type="entry name" value="FSCA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002744">
        <property type="entry name" value="MIP18-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014291">
        <property type="entry name" value="SUF_FeS_clus_asmbl-assoc"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01883">
        <property type="entry name" value="FeS_assembly_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117916">
        <property type="entry name" value="SSF117916"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02945">
        <property type="entry name" value="SUF_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FeS_assembly_P" evidence="1">
        <location>
            <begin position="26"/>
            <end position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG65002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="120" mass="12982" checksum="3B3364409CD89BFB" modified="2017-03-15" version="1">MTDDTSPMEGVPLIAPSSTEHPLYDSIVAACKSVYDPEIPVNIYDLGLIYTIAIDEESAVNVTMTLTAPGCPVAGEMPGWVADAIEPLPGVKQVDVEMTFEPQWGMDMMSDEARLELGFM</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LKS0</accession>
    <name>A0A1M5LKS0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">AsmA-like C-terminal region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0351</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65641.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898808.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0351"/>
    <dbReference type="EnsemblBacteria" id="SHG65641">
        <property type="protein sequence ID" value="SHG65641"/>
        <property type="gene ID" value="SAMN05444003_0351"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025263">
        <property type="entry name" value="DUF3971"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13116">
        <property type="entry name" value="DUF3971"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="domain" description="DUF3971" evidence="2">
        <location>
            <begin position="465"/>
            <end position="621"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG65641.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="1093" mass="116690" checksum="85429F1AF9CD981F" modified="2017-03-15" version="1">MTETEQADEPKTKARSKRKVAWHALRSVGLLLFLPVLFALVAAVMLFDRDITAPSWVKSEVSQRAERALAGGSIEFGAINVNVGRDLHPSLRLEDTTLRDANGEVLVNVDEISGLISPRGLVLERAALLQEVVFSGIELTLNRTAEGEVALSFDNTTGPAQTAPDLISLLTQVEQVFEQPALVALEQIELADLSIIYRDDRSDQTWQVESGGVSLDLRGDQLLAVADLPFVQASGEMGLAALDLRQMRSSGQADLAVSIENIRAKDLAAQSSAVSFLANVDAPLTASLHMSIEEGGVFTPIRVALNLDEGVVKTGPNTPGLEFETAQALLSFDPATRIVTFDDVLMSSNWGGLNAQGQLILIGTEQGLPTEIISQFTMREVTLSPPGIFAEPKSIDGASIDLRASLDPFVLDIGQFVVHDAHQPLQAAGRVLVDGQGVTADLDFEVPRIEHTDLRAWWPEGRKVGTREWLTENVSTGVLVDMVGGVRIRPELPAMYSVGFQYEDATVKYLKDLPPLENGSGYASFLDNAFFLSVDEGYIEAPQGGQIDLEGSDLEIRDLRVKGGPIDLNIRGASSITAALSTLDLPPFEFMQKANLPVTLADGLAQFDGLVTFPLKKKLTKPEVAFSFDADLRRVASDRLIPNRSLSAPDLSLAVTADRIELEGDLSVDGVPLNANYAQTFGPDGGRLVSGEVELSQRFLDGFNISLPPGTLRGEGRGTFEIALPKDAPPKFEMTTDLAGVGLSIPALNWSMSERATGLLSISGSLANPVQLDRLEIDGPGLDLVGSVDLSPTGGFERAQFSQLRVGNWLNAPVTLRGRGAGRPAAVQINGGALDLRQASFGGGQSRSGPLDLNFDRLQVTEGIALTDFRGAFDEGVGLSGQFTANINGQTAIRGTLVPQNGRTAMRLQTDDAGRAAAAAGLLRNGVGGVLDLFLIPAEQDGVFDGVLKIERLRIRDAPAMAALLDAISVVGLLQQLDGQGLALEEVDARFRLTPTQLIVTEASAVGPGLGISIDGIYTLASKSMDFQGVISPVYLLNGIGSLLTRKGEGLIGFNFNLTGQTDNPNVLVNPLSALTPGMFRELFRRPPPQVSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LMC7</accession>
    <name>A0A1M5LMC7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 8 10">Uracil-DNA glycosylase</fullName>
            <shortName evidence="8">UDG</shortName>
            <ecNumber evidence="4 8 10">3.2.2.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">ung</name>
        <name evidence="12" type="ORF">SAMN05444003_0376</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 8 10">Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8 10">
            <text>Hydrolyzes single-stranded DNA or mismatched double-stranded DNA and polynucleotides, releasing free uracil.</text>
            <dbReference type="EC" id="3.2.2.27"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 8 10">Belongs to the uracil-DNA glycosylase (UDG) superfamily. UNG family.</text>
    </comment>
    <dbReference type="EC" id="3.2.2.27" evidence="4 8 10"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66211.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898846.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0376"/>
    <dbReference type="EnsemblBacteria" id="SHG66211">
        <property type="protein sequence ID" value="SHG66211"/>
        <property type="gene ID" value="SAMN05444003_0376"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004844">
        <property type="term" value="F:uracil DNA N-glycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006284">
        <property type="term" value="P:base-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd10027">
        <property type="entry name" value="UDG-F1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00148">
        <property type="entry name" value="UDG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002043">
        <property type="entry name" value="UDG_fam1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018085">
        <property type="entry name" value="Ura-DNA_Glyclase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005122">
        <property type="entry name" value="Uracil-DNA_glycosylase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036895">
        <property type="entry name" value="Uracil-DNA_glycosylase-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11264">
        <property type="entry name" value="PTHR11264"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03167">
        <property type="entry name" value="UDG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00986">
        <property type="entry name" value="UDG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52141">
        <property type="entry name" value="SSF52141"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00628">
        <property type="entry name" value="ung"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00130">
        <property type="entry name" value="U_DNA_GLYCOSYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 8 10" id="KW-0227">DNA damage</keyword>
    <keyword evidence="7 8 10" id="KW-0234">DNA repair</keyword>
    <keyword evidence="6 8 10" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UDG" evidence="11">
        <location>
            <begin position="44"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="8 9">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001400"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008184"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012030"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00148"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003780"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00986"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG66211.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="214" mass="23626" checksum="B148BAD48F0E1F90" modified="2017-03-15" version="1">MFDLSRLGTWGDLPFFADALPSIEAALAGQQFLPPEHQVFAALERVQPEDCRVLILGQDPYPTPGHAHGLAFSAEEGTTPFPKSILNIFKEMESDLGENPSSPDLHHWADQGVLLLNTALTVRPHEAGSHAKLGWSELTRQVVARLDEAPRAWLLWGKHAQGFGQDLAAYHLKIETAHPSPLSAYRGFFGSRPFSTVNQWLMDQGQEPITWVGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LS30</accession>
    <name>A0A1M5LS30_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0446</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67821.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898949.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG67821">
        <property type="protein sequence ID" value="SHG67821"/>
        <property type="gene ID" value="SAMN05444003_0446"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009912130" evidence="1">
        <location>
            <begin position="21"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG67821.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="77" mass="8099" checksum="19DAB489A581A3C7" modified="2017-03-15" version="1">MKIILGAGLALALTAGAAHAVSLTYDFSGYSSVWSDQLTFSSTTGQGPDVTVTATDYYRDTGVIQDRQHGLQASVED</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LSG8</accession>
    <name>A0A1M5LSG8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cell division protein ZapA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0458</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68092.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898968.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0458"/>
    <dbReference type="EnsemblBacteria" id="SHG68092">
        <property type="protein sequence ID" value="SHG68092"/>
        <property type="gene ID" value="SAMN05444003_0458"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007838">
        <property type="entry name" value="Cell_div_ZapA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036192">
        <property type="entry name" value="Cell_div_ZapA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042233">
        <property type="entry name" value="Cell_div_ZapA_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05164">
        <property type="entry name" value="ZapA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102829">
        <property type="entry name" value="SSF102829"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="2" id="KW-0132">Cell division</keyword>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="63"/>
            <end position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG68092.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="127" mass="13903" checksum="FB7297E8BF22BFEB" modified="2017-03-15" version="1">MAQVEIKIGGRTFEVACQDGEEHFLQTAAGMLDEEATHLSSQIGRMPEARMLLMAGLMLADKTAGLEDKVKEAADREAQLQARIDTLESQPQETREIPVVPPSVTETLSELAARAEALAEEVERKAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LVI1</accession>
    <name>A0A1M5LVI1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Haemolysin XhlA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0471</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68393.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898984.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG68393">
        <property type="protein sequence ID" value="SHG68393"/>
        <property type="gene ID" value="SAMN05444003_0471"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019715">
        <property type="entry name" value="Haemolysin_XhlA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10779">
        <property type="entry name" value="XhlA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="43"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG68393.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="68" mass="7584" checksum="D05D57C687A3BC0B" modified="2017-03-15" version="1">MDNDWHLKVDERLAALETRNAVDEVHRLNVTERLSAIEDTLKWVVRLMIGGLIVAGLTYALNGGLSLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LZV8</accession>
    <name>A0A1M5LZV8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transglycosylase SLT domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0573</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the virb1 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70622.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899124.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0573"/>
    <dbReference type="EnsemblBacteria" id="SHG70622">
        <property type="protein sequence ID" value="SHG70622"/>
        <property type="gene ID" value="SAMN05444003_0573"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023346">
        <property type="entry name" value="Lysozyme-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008258">
        <property type="entry name" value="Transglycosylase_SLT_dom_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01464">
        <property type="entry name" value="SLT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53955">
        <property type="entry name" value="SSF53955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012635409" evidence="2">
        <location>
            <begin position="20"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="domain" description="SLT" evidence="3">
        <location>
            <begin position="82"/>
            <end position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG70622.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="194" mass="21006" checksum="396546C3CD483D4E" modified="2017-03-15" version="1">MRFLICASLISGLATVSVAQDTISTSSRTALFQRQLDVLDGRAAQQYNNSVRLQPQAIIVPGAPGSIPAYSGNYSGEYLQLASAAARRHGVPPNLFLRLVQQESGWNPRAVSNKGAIGLAQLMPATARYLGVDPYDVDENLDGGARYLNEQFRKFGTWRLALAAYNAGPGAVEQYGGIPPYRETQDYVRIILGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M009</accession>
    <name>A0A1M5M009_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Peptide/nickel transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0576</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70684.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899127.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0576"/>
    <dbReference type="EnsemblBacteria" id="SHG70684">
        <property type="protein sequence ID" value="SHG70684"/>
        <property type="gene ID" value="SAMN05444003_0576"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="9"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="128"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="170"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="208"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="263"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="308"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="122"/>
            <end position="327"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG70684.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="341" mass="38097" checksum="4C56A8CF18E1853A" modified="2017-03-15" version="1">MGLFILRRLGVMILTALCLTFIVFWLTNLYPNLEKLAKTQGNFRMSDEAVTSYLTNRGYTQSLPVKYGQWLGVLPGWEIEGSDGELRRRCEEGQNYCGVLQGYWGYSTVFKEDVSKIIATRLALTGKLMFWVLMVMVPGALIIGILAGMREGSKLDRSLSTFSIMTTATPEYVSGVVLIAVFATPLFGMQYFKGTATSAMDDANFQNFFLPVITIALYGMGYIARMTRASMTEVMTAQYIRTARLKGVKFRTIVIKHALRNALIAPFTVIMLQIPWLLNGVVIVETLFNYKGFGWTLVQAASNNDIELLLGVSVVSVFVVLLTQLISDIGYVFLNPRIRIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M786</accession>
    <name>A0A1M5M786_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Dimethylglycine dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0674</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GcvT family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73122.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899275.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG73122">
        <property type="protein sequence ID" value="SHG73122"/>
        <property type="gene ID" value="SAMN05444003_0674"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032503">
        <property type="entry name" value="FAO_M"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013977">
        <property type="entry name" value="GCV_T_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006222">
        <property type="entry name" value="GCV_T_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029043">
        <property type="entry name" value="GcvT/YgfZ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027266">
        <property type="entry name" value="TrmE/GcvT_dom1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16350">
        <property type="entry name" value="FAO_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01571">
        <property type="entry name" value="GCV_T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08669">
        <property type="entry name" value="GCV_T_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101790">
        <property type="entry name" value="SSF101790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ig-like" evidence="2">
        <location>
            <begin position="510"/>
            <end position="625"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50835"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG73122.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="801" mass="88729" checksum="05898B79D39E2399" modified="2017-03-15" version="1">MKTSTRVVVIGGGVVGCSVLYHLTKLGWSDVVLLERSELTSGSTWHAAGGFHTLNGDTNMAALQGYTIKLYRELEEITGMSCGLHHVGGVTLADNQDRFDMLVAERAKHRYMGLETEIVGPDEIKKIAPITNTKGIIGALYDPLDGHLDPSGTTHAYAKAARMGGAEIELHTKVEKTNQRPDGTWDVVTNKGTIHAEHVVNAGGLWAREVAALAGIYTPLHPMEHQYIVTDDVPEIYERDTEHPHVMDPAGESYLRQEGRGLCIGFYEQPCKPWAVDGTPWDFGHELLPDNLDKIEASIEFAYRRFPILERSGVKSVIHGPFTFAPDGNPLVGPVPGVRNYWSACGVMAGFSQGGGVGLMLAQWMIEGECERDVTAMDVARYGKWITPGYTRPKVTENYQNRFSVTYPNEELPAARPHRTTPMYDIFSDLGAVWGHQFGLEVANYFAQGDEPTYEAPSFRRSDAFDATAREVKAVRESVGINEIQNFGKFAITGPNARTWLDNIMAGRIPKPGRMTLTPMLSPKGKLLGDFTVSCFAEGNFQLTASYGYQEIHYRWFMQHIEDGVRVRNVSDRRTGFQIAGPKSRDLLAACTRDATDLKFLDVRQMTIGQVTCTVQQVSYTGDLGFEIYCDPMDQRQLWSVLWAAGQPMGLTAFGMRAMMSLRLDRHFGSWLREFSPDYTAAETGMDRFIQWSKNTDFIGRAATESERATPPDRTAVVFEVDADDADVTAYEPVFIDDEVIGFCTSGGYSHHQGKSIAMALIPREVAKEGLKVKIEILGQLRSASLITSPLFEPKGVVFDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M7W7</accession>
    <name>A0A1M5M7W7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 10">Delta-aminolevulinic acid dehydratase</fullName>
            <ecNumber evidence="4 10">4.2.1.24</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">SAMN05444003_0671</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>2 5-aminolevulinate = H(+) + 2 H2O + porphobilinogen</text>
            <dbReference type="Rhea" id="RHEA:24064"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:58126"/>
            <dbReference type="ChEBI" id="CHEBI:356416"/>
            <dbReference type="EC" id="4.2.1.24"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; coproporphyrinogen-III from 5-aminolevulinate: step 1/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Homooctamer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 11">Belongs to the ALAD family.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.24" evidence="4 10"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73049.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0671"/>
    <dbReference type="EnsemblBacteria" id="SHG73049">
        <property type="protein sequence ID" value="SHG73049"/>
        <property type="gene ID" value="SAMN05444003_0671"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00251">
        <property type="reaction ID" value="UER00318"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004655">
        <property type="term" value="F:porphobilinogen synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006782">
        <property type="term" value="P:protoporphyrinogen IX biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001731">
        <property type="entry name" value="ALAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030656">
        <property type="entry name" value="ALAD_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11458">
        <property type="entry name" value="PTHR11458"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00490">
        <property type="entry name" value="ALAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001415">
        <property type="entry name" value="Porphbilin_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00144">
        <property type="entry name" value="DALDHYDRTASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01004">
        <property type="entry name" value="ALAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00169">
        <property type="entry name" value="D_ALA_DEHYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0350">Heme biosynthesis</keyword>
    <keyword evidence="7 10" id="KW-0456">Lyase</keyword>
    <keyword evidence="8 10" id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Schiff-base intermediate with substrate" evidence="9">
        <location>
            <position position="224"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with substrate" evidence="9">
        <location>
            <position position="278"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012053"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00020771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR001415-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU000515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU004161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG73049.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="354" mass="38654" checksum="0007699011DAA614" modified="2017-03-15" version="1">MPSLVKSQNPCNHIGCDKKGPIMKPTVAPFPTTRLRRMRATPALRRLARQNVLTTNDLIWPIFVMDGEDTETPVPSMPGVTRKTVDRAVVAAKEAHALGIPAICIFPYTGMEARTEDCEMAWDPDNVSNRTIRAIKDAVPDIAIMTDIALDPYNINGHDGFVENGEIVNDRTVEALVKMALAQAEAGADILGPSDMMDGRIAAIRSALESDKYQNVTILSYTAKYASSFYGPFRDAVGASSALTGDKNTYQMDPANSDEALRLVERDLNEGADMIMVKPGMPYLDICRRVKDTFGVPTYAYQVSGEYAMLMAAAENGWLDSDKVILESLLSFKRAGCDGILTYFAPRIAKALSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M7W8</accession>
    <name>A0A1M5M7W8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">DNA gyrase subunit A</fullName>
            <ecNumber evidence="8">5.6.2.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">gyrA</name>
        <name evidence="11" type="ORF">SAMN05444003_0684</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>ATP-dependent breakage, passage and rejoining of double-stranded DNA.</text>
            <dbReference type="EC" id="5.6.2.2"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="8">Heterotetramer, composed of two GyrA and two GyrB chains. In the heterotetramer, GyrA contains the active site tyrosine that forms a transient covalent intermediate with DNA, while GyrB binds cofactors and catalyzes ATP hydrolysis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="8">Few gyrases are as efficient as E.coli at forming negative supercoils. Not all organisms have 2 type II topoisomerases; in organisms with a single type II topoisomerase this enzyme also has to decatenate newly replicated chromosomes.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the topoisomerase GyrA/ParC subunit family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the type II topoisomerase GyrA/ParC subunit family.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.2" evidence="8"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73338.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899291.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0684"/>
    <dbReference type="EnsemblBacteria" id="SHG73338">
        <property type="protein sequence ID" value="SHG73338"/>
        <property type="gene ID" value="SAMN05444003_0684"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034335">
        <property type="term" value="F:DNA negative supercoiling activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006265">
        <property type="term" value="P:DNA topological change"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006261">
        <property type="term" value="P:DNA-templated DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00187">
        <property type="entry name" value="TOP4c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.268.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.199.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01897">
        <property type="entry name" value="GyrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005743">
        <property type="entry name" value="GyrA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006691">
        <property type="entry name" value="GyrA/parC_rep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035516">
        <property type="entry name" value="Gyrase/topoIV_suA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013760">
        <property type="entry name" value="Topo_IIA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013758">
        <property type="entry name" value="Topo_IIA_A/C_ab"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013757">
        <property type="entry name" value="Topo_IIA_A_a_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002205">
        <property type="entry name" value="Topo_IIA_dom_A"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03989">
        <property type="entry name" value="DNA_gyraseA_C"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00521">
        <property type="entry name" value="DNA_topoisoIV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00434">
        <property type="entry name" value="TOP4c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101904">
        <property type="entry name" value="SSF101904"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56719">
        <property type="entry name" value="SSF56719"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7 8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0799">Topoisomerase</keyword>
    <feature type="domain" description="TOP4c" evidence="10">
        <location>
            <begin position="26"/>
            <end position="505"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="GyrA-box" evidence="8">
        <location>
            <begin position="566"/>
            <end position="572"/>
        </location>
    </feature>
    <feature type="active site" description="O-(5'-phospho-DNA)-tyrosine intermediate" evidence="8">
        <location>
            <position position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01897"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG73338.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="916" mass="101186" checksum="C9BE44FDE0B9D75C" modified="2017-03-15" version="1">MSDTPETPENEDEISMERPAYDGPTVSIMDEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRIIYSMYEKGITHDKTYRKSAKSVGDVMGSYHPHGDSAIYEALVRMAQDFSMSLPLIDGQGNFGSMDGDNAAAMRYTESRLEKVTVNMTDDLGKETVDFVDNYDGKEREPSVLPSKFPNMLVNGAGGIAVGMATNIPPHNLGEVIDATLALTDNPDLTSEELIEYVPGPDFPTGGIMLGRSGARKAYLEGRGSVIMRARTEVEELRKDRYAIVITEVPYQVNKASMIDRIAEAARDKRIEGIAHVQDESDRNGVRVVIELKRDATAEVVLNQLFRFTPMQTSFGCNMLALNGGRPEQLTLRKFLTSFIDFREDVVARRTAYELRKARERSHILCGLAVAVTNIDEVVNTIRSSADATEAREKLMTRRWPAESIMEYIQLIDDPTHTANEDGTYNLSETQARAILELRLQRLTQIGVKEVTDELQELAAKIREYLEILGSRDRIMQIIRDELTSIKDQFAVPRRTEIVDWSGDMEDEDLIEKEDMVVTVTSGGYIKRTALADFRAQRRGGKGLSSMATKDEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPLGSRTAKGKAIVNILPIPQGVSIAAIMPVDRPEEEWADLQVVFSTDAGTVRRNALSDFTNVKSNGKIAMKFEGDSEGWSLIDVRIASNDDDVMLTTASGRAIRFPATDVRVFTSRSSTGVRGVKLTGDDKVVSMSIIRHFVADPEERAAYLKMRRAMAGLADDADNDDDEDGVTGAISQERYAEMSAAENLILTVTEQGSGKLSSSHDYPVRGRGGMGVAAMDKAMRGGDLVSSFPVEMGDQIMLVTSTGQSIRVPVEGISFRSRSAGGVKVFDTAKGETVVSVAWIAEQDDDSDETDTPSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MAE6</accession>
    <name>A0A1M5MAE6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Histidine phosphotransferase ChpT</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0727</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899373.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0727"/>
    <dbReference type="EnsemblBacteria" id="SHG74277">
        <property type="protein sequence ID" value="SHG74277"/>
        <property type="gene ID" value="SAMN05444003_0727"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018762">
        <property type="entry name" value="ChpT_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10090">
        <property type="entry name" value="HPTransfase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HPTransfase" evidence="1">
        <location>
            <begin position="76"/>
            <end position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF10090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG74277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="196" mass="21063" checksum="D28055066C495CEA" modified="2017-03-15" version="1">MTNTLAKLVGSRICHDLSSPIGAINNGVELLSLSNGSTTDEIELIGQSAEAASARIMFFRIAYGGAQDGQIARASEITNILEQMSKSGKYTYVWNSRDAVVRLDTQAAFLAIQCLETCLTTGGEIVIEEQDGSWSLSAKGKNIRLNKTLWASLADPSLSEDVTSAEVQFALLPLALSEMGRSLSYDASPNQFSISY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MER5</accession>
    <name>A0A1M5MER5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0791</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75711.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899468.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG75711">
        <property type="protein sequence ID" value="SHG75711"/>
        <property type="gene ID" value="SAMN05444003_0791"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012341419" evidence="1">
        <location>
            <begin position="24"/>
            <end position="302"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG75711.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="302" mass="33269" checksum="765B162BA20D2039" modified="2017-03-15" version="1">MTVFAAPLRAIVASVLLSLSAYAEGFESPEILILGDSQLPFGSGPAFVEFFSDLATSCNATPEQLHELEKLGESRVAAIGVRSTSLPTWMTRSRRGKSALCDVDPNWRVNAGSFGVINTTENKYVQIGRGEAYQFCAPNQTAFETMFRDDYYTPKITLMTFLGNSSRRWANSLDRAIEDIEKLNGQLPEGMGCIFMTTQPAYRESIVEMRRKAQENLELAFEVTGSQCSFVSGATEATIASHQGNASFFRRRSNGSVKDPYHPNENAASVFFDLERDAICSAVFDQLEGVMPMEAMTAQVLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MFM7</accession>
    <name>A0A1M5MFM7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Rhodanese-related sulfurtransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0782</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75503.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899452.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0782"/>
    <dbReference type="EnsemblBacteria" id="SHG75503">
        <property type="protein sequence ID" value="SHG75503"/>
        <property type="gene ID" value="SAMN05444003_0782"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.250.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001763">
        <property type="entry name" value="Rhodanese-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036873">
        <property type="entry name" value="Rhodanese-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00581">
        <property type="entry name" value="Rhodanese"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00450">
        <property type="entry name" value="RHOD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52821">
        <property type="entry name" value="SSF52821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50206">
        <property type="entry name" value="RHODANESE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Rhodanese" evidence="1">
        <location>
            <begin position="47"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG75503.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="147" mass="15554" checksum="DAB9CD2351D3CB53" modified="2017-03-15" version="1">MELTRRLLLTSAAVALAGGTVLIGTQYLARADTARVMTPPEAMEAAIAGDILLVDVRRPDEWATTGLPQGAVGIDMRRDDFLEAVLAARAYSEQPVAVICARGVRSARVTRLFEEAGIASIVDVPEGMLGSRAGPGWLQRGLPVTTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MG09</accession>
    <name>A0A1M5MG09_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Small-conductance mechanosensitive channel</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_0796</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the MscS (TC 1.A.23) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75809.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899471.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0796"/>
    <dbReference type="EnsemblBacteria" id="SHG75809">
        <property type="protein sequence ID" value="SHG75809"/>
        <property type="gene ID" value="SAMN05444003_0796"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022249">
        <property type="entry name" value="DUF3772"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010920">
        <property type="entry name" value="LSM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006685">
        <property type="entry name" value="MscS_channel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011066">
        <property type="entry name" value="MscS_channel_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011014">
        <property type="entry name" value="MscS_channel_TM-2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023408">
        <property type="entry name" value="MscS_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12607">
        <property type="entry name" value="DUF3772"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00924">
        <property type="entry name" value="MS_channel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50182">
        <property type="entry name" value="SSF50182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82689">
        <property type="entry name" value="SSF82689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82861">
        <property type="entry name" value="SSF82861"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0732">Signal</keyword>
    <keyword evidence="6" id="KW-0346">Stress response</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="9">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009912324" evidence="9">
        <location>
            <begin position="23"/>
            <end position="794"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="226"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="268"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="301"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="341"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="372"/>
            <end position="393"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="414"/>
            <end position="435"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="441"/>
            <end position="459"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="480"/>
            <end position="504"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="532"/>
            <end position="549"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="570"/>
            <end position="592"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="598"/>
            <end position="628"/>
        </location>
    </feature>
    <feature type="domain" description="DUF3772" evidence="10">
        <location>
            <begin position="152"/>
            <end position="202"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008017"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF12607"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG75809.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="794" mass="86589" checksum="3990659BDB2CAC17" modified="2017-03-15" version="1">MGAMFRIFLTIAVLSFALPSFAQEETTSVPETPVDDGAAIATAIEDSDLTDGEKAAVAWSIVANAAEEIVKREDASPFALNRFRIQLLEWRDAFLSRQGINAERIATLDAQIAALGPDPASDETLPAEAPEITERRAALQEQRAELAAPAQLAAEGLAQANGLILELDHRISQIEREELTTRGPTPLNPIYWGPAVASLTESVTNWGKEGSAGFFARLRNGSLERVLPGAILLIGVALWIAFKSRGWLASWRDSVVATQSRWKPIQDFFLEFFKLALPLLALTLFVYGIRRLGIFGVVGNPILIALASAATITIFARWLGSEFFPTGEETGPLNYAEEDRAIFRRLTFLLGLGIAGLTVFEVLMSTADAENISIGVILFPINFLAAIALFRFGRKLRDTKQITEKEEITGGIRRYVGFLCMLVAIAVPLLIAAGFSLASNALFRPFVLSLALVGFMMLLHVQISRSWSLYRGRTEDQSDALAPVLIGFVLTLVTLPLLALVWGASSSDLAEWWGRFQSGITVGDTTISPSEFVSFVLVFIIGYVITGFVQSFLKSTILPRTSIDIGGRNAILAGVGYVGVMLSAIFAINSAGIDLTSIALVAGALSVGIGFGLQNIVSNFVSGIILLIERPVSEGDWIEVNGHTGYVRRISVRSTQIETFDRTDVIIPNADLASGAVTNWTRGNSVGRVIIPVGVAYGSDPEKVMEILKDVAMKHPMVLHYPEPSVLFMSFGDSSLDFEVRAILRDVNFILSVQSEMNMEISKRFEEEGIEIPFPQRDLWVRNVQDLTGVEKEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MK45</accession>
    <name>A0A1M5MK45_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">TRAP transporter, DctM subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0870</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77606.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899574.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0870"/>
    <dbReference type="EnsemblBacteria" id="SHG77606">
        <property type="protein sequence ID" value="SHG77606"/>
        <property type="gene ID" value="SAMN05444003_0870"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010656">
        <property type="entry name" value="DctM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004681">
        <property type="entry name" value="TRAP_DctM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33362">
        <property type="entry name" value="PTHR33362"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06808">
        <property type="entry name" value="DctM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="39"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="117"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="163"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="205"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="272"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="320"/>
            <end position="341"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="418"/>
            <end position="440"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="452"/>
            <end position="471"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="477"/>
            <end position="494"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="506"/>
            <end position="525"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="531"/>
            <end position="548"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="560"/>
            <end position="580"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="592"/>
            <end position="620"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="632"/>
            <end position="653"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="673"/>
            <end position="701"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="713"/>
            <end position="738"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="758"/>
            <end position="783"/>
        </location>
    </feature>
    <feature type="domain" description="DctM" evidence="4">
        <location>
            <begin position="110"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="domain" description="DctM" evidence="4">
        <location>
            <begin position="493"/>
            <end position="774"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF06808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG77606.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="784" mass="82479" checksum="CEF721DC2BF9A5CF" modified="2017-03-15" version="1">MLFGLDGVEIGLIIVFLTLFGAILSGFPVAFAIGGAAAISFTIIAILDGGGLLTHFAIDRTTDAYKAIIAEGAKPDAVSVFTHPDLPRYATALFPNGWEQALDRNVSFVVNRMNERVLAGQSIETLLAVLMFVMMGITLERSRIADELLTTMAKVFGPLPGGLAVSIVIVGAFLAASTGIVGATVVTMGLLALPTMLKNGYSPELSTGVIAASGTLGQIIPPSIVIVLLGTLAGDLYSAAQEDRAQLAGCSDALTLLGEPAVVSVGTLFQAALLPGILLAGLYAAYAFGYALLNPSKAPAVPMGGAAGDEVITRRDSLTWFLAMPILLIGFVIVGSQANLIGSQSVIVDSYTDAGQTASLRTNVGDECAASMIELHGQDAWDQALAEQAAIDEAGGVAQARELSEEERQALVEERIEAAAPLGTGLTIGALLLGLVLVLARGVTPSRDQRPIITGAIGVGLILVVDLLFIGPLTTPGATTLLIAIPLIIAFQGLKAAAVRIFSNEILRVVFPPLVLIVAVLGSILGGITNPTPAAALGAGGAIMLAAFRKLQDEGRDGRMVLWTAAAIVTMLLVGVNFDMRLGQEVVLFENYVAFFVAFGAFLFSMFGILWCCWTLWAGGVLTPVVRETAKVTSMVFTILIGSQLLNLVLISFGGEHYIQQFLKSFTSEWTVFIIVMLVLFILGFVLDFLEIIYIVIPIVGPVIYGGTFDPKWVTIMIAVNLQTSFLTPPFGFALFYLRGVAPKEITTGQIYRGVLPFIGIQVLGLALLAAFPAVVTIIPNLLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MMR2</accession>
    <name>A0A1M5MMR2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 9">Trigger factor</fullName>
            <shortName evidence="7">TF</shortName>
            <ecNumber evidence="7">5.2.1.8</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">PPIase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">tig</name>
        <name evidence="11" type="ORF">SAMN05444003_0911</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 7">Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7 8">
            <text>[protein]-peptidylproline (omega=180) = [protein]-peptidylproline (omega=0)</text>
            <dbReference type="Rhea" id="RHEA:16237"/>
            <dbReference type="Rhea" id="RHEA-COMP:10747"/>
            <dbReference type="Rhea" id="RHEA-COMP:10748"/>
            <dbReference type="ChEBI" id="CHEBI:83833"/>
            <dbReference type="ChEBI" id="CHEBI:83834"/>
            <dbReference type="EC" id="5.2.1.8"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="7">About half TF is bound to the ribosome near the polypeptide exit tunnel while the other half is free in the cytoplasm.</text>
    </comment>
    <comment type="domain">
        <text evidence="7">Consists of 3 domains; the N-terminus binds the ribosome, the middle domain has PPIase activity, while the C-terminus has intrinsic chaperone activity on its own.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 7 9">Belongs to the FKBP-type PPIase family. Tig subfamily.</text>
    </comment>
    <dbReference type="EC" id="5.2.1.8" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78526.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900416.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0911"/>
    <dbReference type="EnsemblBacteria" id="SHG78526">
        <property type="protein sequence ID" value="SHG78526"/>
        <property type="gene ID" value="SAMN05444003_0911"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1050">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00303">
        <property type="entry name" value="Trigger_factor_Tig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046357">
        <property type="entry name" value="PPIase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001179">
        <property type="entry name" value="PPIase_FKBP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005215">
        <property type="entry name" value="Trig_fac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008880">
        <property type="entry name" value="Trigger_fac_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037041">
        <property type="entry name" value="Trigger_fac_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008881">
        <property type="entry name" value="Trigger_fac_ribosome-bd_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036611">
        <property type="entry name" value="Trigger_fac_ribosome-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027304">
        <property type="entry name" value="Trigger_fact/SurA_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30560">
        <property type="entry name" value="PTHR30560"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00254">
        <property type="entry name" value="FKBP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05698">
        <property type="entry name" value="Trigger_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05697">
        <property type="entry name" value="Trigger_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003095">
        <property type="entry name" value="Trigger_factor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102735">
        <property type="entry name" value="SSF102735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109998">
        <property type="entry name" value="SSF109998"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00115">
        <property type="entry name" value="tig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50059">
        <property type="entry name" value="FKBP_PPIASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 9" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="7 9" id="KW-0132">Cell division</keyword>
    <keyword evidence="4 7 9" id="KW-0143">Chaperone</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 7 8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7 8" id="KW-0697">Rotamase</keyword>
    <feature type="domain" description="PPIase FKBP-type" evidence="10">
        <location>
            <begin position="165"/>
            <end position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00024849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003914"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG78526.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="443" mass="49497" checksum="6B5D7EA0B470043C" modified="2017-03-15" version="1">MQVTETLNEGLKRGYQIVVTAEELDNKVSEKLAEAQPDVEMKGFRKGKVPMALLRKQFGQRLMGEAMQESIDGALNSHLEESGDRPAQQPQMKMTNEDWKEGDDINVEVSYERLPDVPETDFSRIKLERMVVKADDAAVDEALGNLADTAQNFEDRRKGSKAKDGDQVVIDFLGKVDGEPFEGGQADDYPLVLGSNSFIPGFEDQLVGVKAGDEKAVEVTFPEEYQAEHLAGKAAVFECTVKAVKEPKAAEINDDMAKQFGAEDLAALKTQITERLEEEYKGAARAVTKRALLDALDKKVKFDLPESLVDAEAGQIAHQLWHDENPDVEGHDHPEIEPTKDHKKLAERRVKLGLLLADIGQKAEVQVTDAEMTQAIMNQARQYPGQERQFFEFVQQNAQFRQQLQAPMFEDKVVDHIFELAAVKDKEVSKDDLTKAVEALEDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MPF8</accession>
    <name>A0A1M5MPF8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_0940</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the thioredoxin family. DsbE subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79178.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899678.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0940"/>
    <dbReference type="EnsemblBacteria" id="SHG79178">
        <property type="protein sequence ID" value="SHG79178"/>
        <property type="gene ID" value="SAMN05444003_0940"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030288">
        <property type="term" value="C:outer membrane-bounded periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015036">
        <property type="term" value="F:disulfide oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017004">
        <property type="term" value="P:cytochrome complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004799">
        <property type="entry name" value="Periplasmic_diS_OxRdtase_DsbE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013740">
        <property type="entry name" value="Redoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017937">
        <property type="entry name" value="Thioredoxin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08534">
        <property type="entry name" value="Redoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00385">
        <property type="entry name" value="dsbE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00194">
        <property type="entry name" value="THIOREDOXIN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0201">Cytochrome c-type biogenesis</keyword>
    <keyword evidence="3" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin" evidence="5">
        <location>
            <begin position="37"/>
            <end position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007758"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022748"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG79178.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="179" mass="19427" checksum="DB9F0074E5C45BFD" modified="2017-03-15" version="1">MSKISPLMLIPVLIFAGFAGLFLAGMFRENAGEVPSTLIGQPVPAVPTEAVEGTELIVMEDFTSGEITIVNFWASWCPPCRAEHPTLLRLSQEGYRIAGMNFRDTGDQARDYLIEDGNPFFATGFDPRGRVALDWGVTAPPETFIVGPDGTVLSRFIGPLVGSDFDQRFLPMLEAAEGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MPH7</accession>
    <name>A0A1M5MPH7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0938</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79146.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899673.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0938"/>
    <dbReference type="EnsemblBacteria" id="SHG79146">
        <property type="protein sequence ID" value="SHG79146"/>
        <property type="gene ID" value="SAMN05444003_0938"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010634">
        <property type="entry name" value="DUF1223"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36057">
        <property type="entry name" value="PTHR36057"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06764">
        <property type="entry name" value="DUF1223"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG79146.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="231" mass="24836" checksum="8D9F60171FBA14C4" modified="2017-03-15" version="1">MRALLSAFTIASTVFGSAVVAENATVVELYTSQGCSSCPPADEILAELSDRDDVIALALHVDYWDYLGWVDDLANPAHTERQRAFARAKGARTIYTPQMVFGGVDHVIGSRPMEVMEQIEKHGAEADAVEVSLNRNGDTLRIDATQVGTFSGDAVVQIVRFMPAVTRDIRRGENAGRSLTYHNVVSSWQNAMTWDTGEPLAIEATVSGSDAVAVIIQDGTDGPVLGAAQLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MSL0</accession>
    <name>A0A1M5MSL0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">NADH-quinone oxidoreductase</fullName>
            <ecNumber evidence="8">7.1.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">SAMN05444003_1000</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>a quinone + 5 H(+)(in) + NADH = a quinol + 4 H(+)(out) + NAD(+)</text>
            <dbReference type="Rhea" id="RHEA:57888"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>2Fe-2S cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49601"/>
        </cofactor>
        <text evidence="8">Binds 1 [2Fe-2S] cluster per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 8">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the complex I 75 kDa subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="7.1.1.-" evidence="8"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80354.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899743.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1000"/>
    <dbReference type="EnsemblBacteria" id="SHG80354">
        <property type="protein sequence ID" value="SHG80354"/>
        <property type="gene ID" value="SAMN05444003_1000"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008137">
        <property type="term" value="F:NADH dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048038">
        <property type="term" value="F:quinone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042773">
        <property type="term" value="P:ATP synthesis coupled electron transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006656">
        <property type="entry name" value="Mopterin_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006963">
        <property type="entry name" value="Mopterin_OxRdtase_4Fe-4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000283">
        <property type="entry name" value="NADH_UbQ_OxRdtase_75kDa_su_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010228">
        <property type="entry name" value="NADH_UbQ_OxRdtase_Gsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019574">
        <property type="entry name" value="NADH_UbQ_OxRdtase_Gsu_4Fe4S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015405">
        <property type="entry name" value="NuoG_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00384">
        <property type="entry name" value="Molybdopterin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10588">
        <property type="entry name" value="NADH-G_4Fe-4S_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09326">
        <property type="entry name" value="NADH_dhqG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00929">
        <property type="entry name" value="NADH-G_4Fe-4S_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01973">
        <property type="entry name" value="NuoG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51839">
        <property type="entry name" value="4FE4S_HC3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51669">
        <property type="entry name" value="4FE4S_MOW_BIS_MGD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00641">
        <property type="entry name" value="COMPLEX1_75K_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00642">
        <property type="entry name" value="COMPLEX1_75K_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00643">
        <property type="entry name" value="COMPLEX1_75K_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="4 8" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5 8" id="KW-0408">Iron</keyword>
    <keyword evidence="6 8" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0520">NAD</keyword>
    <keyword evidence="8" id="KW-0874">Quinone</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="9">
        <location>
            <begin position="5"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S His(Cys)3-ligated-type" evidence="11">
        <location>
            <begin position="90"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S Mo/W bis-MGD-type" evidence="10">
        <location>
            <begin position="227"/>
            <end position="283"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000100"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG80354.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="672" mass="72303" checksum="87ABAFFA55BF0C24" modified="2017-03-15" version="1">MSDLRKVVIDGNEVEVDGAMTLIQACEEAGIEIPRFCYHERLSIAGNCRMCLVEVVGGPPKPAASCAMQVRDLRPGPEGQPPVVKTNSPMVKKAREGVMEFFLINHPLDCPICDQGGECDLQDQAMAYGVDFSRFREPKRAVDDLDLGPLVETHMTRCISCTRCVRFTTEVAGITQMGQTGRGEDAEITSYLGETLDSNLQGNIIDLCPVGALVSKPYAFTARPWELSKTESIDVMDALGSNIRIDTKGREVMRFLPRNHDGVNEEWISDKTRFVWDGLRRQRLDTPYIRENGKLRKASWPEALSAAAAAMKGKKVAGLVGDLASVESAYALKQLVEDLGGNVECRTDGAKLPEGNRFGYVGNAAIEDIDEAEAIMLIGCNPRTEAPVLNARIRKAWTRGANVGVIGPKVDLTYDHSDLGDKPEVITELLSRDHSAVLEKPSLIIIGQGALCRTDGEAILGIAIKLAESTGSKLMVLHTAAGRVGAMDVGAVTEGGVMQALDGAEVIYNLGADEGDITGDAFKIYQGSHGDRGAHGADIILPAAAYTEENGLFVNTEGRPQLAMRAGFAPGEAKENWAILRALSAELDATLPFDSLAQLRSALIEAHPHLGAIDEVAENEWASVKAGKVNKAAFKYAVEEFYLTNPIARASQLMGELAANAKARSTAPMAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MX18</accession>
    <name>A0A1M5MX18_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 6">Thymidylate kinase</fullName>
            <ecNumber evidence="3 6">2.7.4.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5 6">dTMP kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">tmk</name>
        <name evidence="8" type="ORF">SAMN05444003_1068</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>ATP + dTMP = ADP + dTDP</text>
            <dbReference type="Rhea" id="RHEA:13517"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58369"/>
            <dbReference type="ChEBI" id="CHEBI:63528"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.9"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the thymidylate kinase family.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.9" evidence="3 6"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81747.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899804.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1068"/>
    <dbReference type="EnsemblBacteria" id="SHG81747">
        <property type="protein sequence ID" value="SHG81747"/>
        <property type="gene ID" value="SAMN05444003_1068"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004798">
        <property type="term" value="F:thymidylate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006233">
        <property type="term" value="P:dTDP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006235">
        <property type="term" value="P:dTTP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00165">
        <property type="entry name" value="Thymidylate_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039430">
        <property type="entry name" value="Thymidylate_kin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018095">
        <property type="entry name" value="Thymidylate_kin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018094">
        <property type="entry name" value="Thymidylate_kinase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02223">
        <property type="entry name" value="Thymidylate_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00041">
        <property type="entry name" value="DTMP_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01331">
        <property type="entry name" value="THYMIDYLATE_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 8" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0545">Nucleotide biosynthesis</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thymidylate_kin" evidence="7">
        <location>
            <begin position="5"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="7"/>
            <end position="14"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00017144"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00029962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00165"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02223"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG81747.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="197" mass="22034" checksum="272DB9D7FD214533" modified="2017-03-15" version="1">MFVTFEGIDGSGKSTQARLLAERLDDVVLTREPGGSPGAEEIRQLVLTGDPDRWTAETEILLFTAARRDHLERTILPALEQGKTVISDRFADSTRVYQGATRGDLRNTVDELHRLMIGREPDLTFIIDMDPEEALRRGLARKSGEDRFEDFGLGFQETLRHGFLNLAQTEDRCVLIDGNRAIEEVSADVATQFAART</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MXE1</accession>
    <name>A0A1M5MXE1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Cytochrome c oxidase subunit 1</fullName>
            <ecNumber evidence="8">7.1.1.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_1075</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6 8">
            <text>4 Fe(II)-[cytochrome c] + 8 H(+)(in) + O2 = 4 Fe(III)-[cytochrome c] + 4 H(+)(out) + 2 H2O</text>
            <dbReference type="Rhea" id="RHEA:11436"/>
            <dbReference type="Rhea" id="RHEA-COMP:10350"/>
            <dbReference type="Rhea" id="RHEA-COMP:14399"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
            <dbReference type="ChEBI" id="CHEBI:29034"/>
            <dbReference type="EC" id="7.1.1.9"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Energy metabolism; oxidative phosphorylation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the heme-copper respiratory oxidase family.</text>
    </comment>
    <dbReference type="EC" id="7.1.1.9" evidence="8"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81885.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899810.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1075"/>
    <dbReference type="EnsemblBacteria" id="SHG81885">
        <property type="protein sequence ID" value="SHG81885"/>
        <property type="gene ID" value="SAMN05444003_1075"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00705"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045277">
        <property type="term" value="C:respiratory chain complex IV"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004129">
        <property type="term" value="F:cytochrome-c oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015990">
        <property type="term" value="P:electron transport coupled proton transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006119">
        <property type="term" value="P:oxidative phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd01663">
        <property type="entry name" value="Cyt_c_Oxidase_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.210.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023616">
        <property type="entry name" value="Cyt_c_oxase-like_su1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036927">
        <property type="entry name" value="Cyt_c_oxase-like_su1_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000883">
        <property type="entry name" value="Cyt_C_Oxase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023615">
        <property type="entry name" value="Cyt_c_Oxase_su1_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033944">
        <property type="entry name" value="Cyt_c_oxase_su1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014241">
        <property type="entry name" value="Cyt_c_oxidase_su1_bac"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10422">
        <property type="entry name" value="PTHR10422"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00115">
        <property type="entry name" value="COX1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01165">
        <property type="entry name" value="CYCOXIDASEI"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81442">
        <property type="entry name" value="SSF81442"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02891">
        <property type="entry name" value="CtaD_CoxA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50855">
        <property type="entry name" value="COX1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00077">
        <property type="entry name" value="COX1_CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0186">Copper</keyword>
    <keyword evidence="7" id="KW-0249">Electron transport</keyword>
    <keyword evidence="7" id="KW-0349">Heme</keyword>
    <keyword evidence="8" id="KW-0408">Iron</keyword>
    <keyword evidence="5 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0679">Respiratory chain</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="32"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="90"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="134"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="180"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="218"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="265"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="301"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="337"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="372"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="411"/>
            <end position="431"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="443"/>
            <end position="464"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="484"/>
            <end position="510"/>
        </location>
    </feature>
    <feature type="domain" description="COX1" evidence="9">
        <location>
            <begin position="21"/>
            <end position="549"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004673"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00029368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU363061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50855"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG81885.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="557" mass="62378" checksum="F9A0835625A736A2" modified="2017-03-15" version="1">MADAAINGHEHEDNRGFFTRWFMSTNHKDIGILYLFVAGIVGFISVAFTVYMRLELMNPGVQYMCLEGARFIADASAECTPNGHLWNVMITYHGVLMMFFVVIPALFGGFGNYFMPLQIGAPDMAFPRMNNLSFWMYVAGTSLGVASMLAPGGNGQLGSGVGWVLYPPLSTTESGMSMDLAIFAVHVSGASSILGAINMITTFLNMRAPGMTLHKVPLFSWSIFVTAWLILLALPVLAGAITMLLTDRNFGTTFFDPAGGGDPILYQHILWFFGHPEVYIIIVPGFGIISHVIATFSRKPIFGYLPMVYAMVAIGVLGFVVWAHHMYTVGMSLRQQSYFMLATMVIAVPTGVKVFSWIATMWGGSVEFKTPMLWAFGFLFLFTVGGVTGVVLSQAGVDRAYHDTYYVVAHFHYVMSLGAVFSIFAGIYFYLPKMSGRMYPEWAGKLHFWAMFIGANITFFPQHFLGRQGMPRRYIDYPEAFAYWNYISSWGAFLSFASFVFFIGVIFYTLRWGQRVTEANPWNEYADTLEWTLPSPPPEHTFEILPKQEEWDKGHAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N063</accession>
    <name>A0A1M5N063_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">VOC domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1097</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82383.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG82383">
        <property type="protein sequence ID" value="SHG82383"/>
        <property type="gene ID" value="SAMN05444003_1097"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004360">
        <property type="entry name" value="Glyas_Fos-R_dOase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00903">
        <property type="entry name" value="Glyoxalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="1"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG82383.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="118" mass="13754" checksum="A0D629280E49C85C" modified="2017-03-15" version="1">MMQTATPIIRTDDYQRAKQFYTEQLGFACVEEAGEPVVGFGIFIRDQVRVFIEAWRGAEPEHDGWRAYFHVTSFDDLVAEFRAKDIPFFKEPYVTEYDMREFEVRDPDGNKLAFGADP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N366</accession>
    <name>A0A1M5N366_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="12 13">DNA primase</fullName>
            <ecNumber evidence="12">2.7.7.101</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="primary">dnaG</name>
        <name evidence="17" type="ORF">SAMN05444003_1159</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12 13">RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="12 13 14">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="12 13 14">Binds 1 zinc ion per monomer.</text>
    </comment>
    <comment type="subunit">
        <text evidence="12">Monomer. Interacts with DnaB.</text>
    </comment>
    <comment type="domain">
        <text evidence="12">Contains an N-terminal zinc-binding domain, a central core domain that contains the primase activity, and a C-terminal DnaB-binding domain.</text>
    </comment>
    <comment type="similarity">
        <text evidence="12 13">Belongs to the DnaG primase family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.101" evidence="12"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83887.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899880.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1159"/>
    <dbReference type="EnsemblBacteria" id="SHG83887">
        <property type="protein sequence ID" value="SHG83887"/>
        <property type="gene ID" value="SAMN05444003_1159"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990077">
        <property type="term" value="C:primosome complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003896">
        <property type="term" value="F:DNA primase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03364">
        <property type="entry name" value="TOPRIM_DnaG_primases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.980.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00974">
        <property type="entry name" value="DNA_primase_DnaG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013264">
        <property type="entry name" value="DNA_primase_core_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037068">
        <property type="entry name" value="DNA_primase_core_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006295">
        <property type="entry name" value="DNA_primase_DnaG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036977">
        <property type="entry name" value="DNA_primase_Znf_CHC2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030846">
        <property type="entry name" value="DnaG_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034151">
        <property type="entry name" value="TOPRIM_DnaG_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006171">
        <property type="entry name" value="TOPRIM_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002694">
        <property type="entry name" value="Znf_CHC2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13662">
        <property type="entry name" value="Toprim_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08275">
        <property type="entry name" value="Toprim_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01807">
        <property type="entry name" value="zf-CHC2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002811">
        <property type="entry name" value="DnaG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00493">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00400">
        <property type="entry name" value="ZnF_CHCC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01391">
        <property type="entry name" value="dnaG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50880">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 12 13" id="KW-0235">DNA replication</keyword>
    <keyword evidence="10 12" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1 12 13" id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword evidence="9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6 12 13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 12 13" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2 12 13" id="KW-0639">Primosome</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11 12 13" id="KW-0804">Transcription</keyword>
    <keyword evidence="3 12 13" id="KW-0808">Transferase</keyword>
    <keyword evidence="8 12 13" id="KW-0862">Zinc</keyword>
    <keyword evidence="7 12 14" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="Toprim" evidence="16">
        <location>
            <begin position="262"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="CHC2-type" evidence="12 14">
        <location>
            <begin position="43"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="15">
        <location>
            <begin position="429"/>
            <end position="448"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="15">
        <location>
            <begin position="612"/>
            <end position="636"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="15">
        <location>
            <begin position="612"/>
            <end position="633"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRNR" id="PIRNR002811"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PIRSR" id="PIRSR002811-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS50880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="SHG83887.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="657" mass="72534" checksum="6B95E112045E9106" modified="2017-03-15" version="1">MSLPPGFLDELRTRLSMGQVAGRKVMWDNRKSNPGKGDLWAPCPFHQEKTASFHVDDKKGYYYCFGCHAKGNIFSFVQETENVGFIEAVKILADEAGMQMPDRDPMAQQKADERTVLVGVMEQAVQHFRLNLQTAAAGEARDYLARRGLDEAAQARWDIGFAPEGWENLRTALTGKGAKADELLKVGLVKSSDRGREPYDAFRNRIMFPIRDARGRAIAFGGRAMDPNDNAKYLNSPETPLFDKSRTLFNHGPAREAAGKGNPLIVAEGYMDVIALSEAGFPATVAALGTAITEHHLRMLWRIAPEPILALDGDTAGLRAAMRVIDIALPLLEAGQSLRFAIMPEGLDPDDLLKQQGAGAMQKLIDDAIPMVKLLWQRETEGKTFDSPERKAALDKALLDKINLITDLSIRSHYGRAIKDMQWELFSTRKPRQRSSTPTRRDGYRTQAAWQRDVKPLASNKASALGAGAAHEDVLREAVILATVLATPAVLPEFDGELEMLEFRDQEHAQMRDAIIRYSMNEDLKEAVLQSMGPAPLEKLFGQSHVAITPSVLKAGDLETARLCLAGEFDKIRTSRGRPMEIADAEQEITGVADEGLTWRLAQAAAAEERSRKIAGGDDAEYEEAENGAKLNKDERGSLNNLLNQIDFAKGSRRTKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N5N9</accession>
    <name>A0A1M5N5N9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Isoquinoline 1-oxidoreductase, alpha subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1178</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84313.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899897.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1178"/>
    <dbReference type="EnsemblBacteria" id="SHG84313">
        <property type="protein sequence ID" value="SHG84313"/>
        <property type="gene ID" value="SAMN05444003_1178"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002888">
        <property type="entry name" value="2Fe-2S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036884">
        <property type="entry name" value="2Fe-2S-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006058">
        <property type="entry name" value="2Fe2S_fd_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01799">
        <property type="entry name" value="Fer2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47741">
        <property type="entry name" value="SSF47741"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00197">
        <property type="entry name" value="2FE2S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG84313.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="152" mass="16233" checksum="C880993ABF6F1B3E" modified="2017-03-15" version="1">MKLTVNGTEHEVEVDPNMPLLWVLRDEIGLTGTKYGCGIAQCGACTVHVDGQAVRSCQVAIGDLNGDVTTIEGIGNPETLHAVQESWVEHQVAQCGYCQSGQIMQAASMLEFNPDPSDDVIDAVMSGNLCRCGTYPRIRAAVKTAAAKIREA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N7J8</accession>
    <name>A0A1M5N7J8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Choline dehydrogenase</fullName>
            <ecNumber evidence="7">1.1.99.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_1224</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>A + choline = AH2 + betaine aldehyde</text>
            <dbReference type="Rhea" id="RHEA:17433"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15354"/>
            <dbReference type="ChEBI" id="CHEBI:15710"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="EC" id="1.1.99.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="7">Amine and polyamine biosynthesis; betaine biosynthesis via choline pathway; betaine aldehyde from choline (cytochrome c reductase route): step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the GMC oxidoreductase family.</text>
    </comment>
    <dbReference type="EC" id="1.1.99.1" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85422.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899934.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1224"/>
    <dbReference type="EnsemblBacteria" id="SHG85422">
        <property type="protein sequence ID" value="SHG85422"/>
        <property type="gene ID" value="SAMN05444003_1224"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00529">
        <property type="reaction ID" value="UER00385"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008812">
        <property type="term" value="F:choline dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019285">
        <property type="term" value="P:glycine betaine biosynthetic process from choline"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011533">
        <property type="entry name" value="BetA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012132">
        <property type="entry name" value="GMC_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000172">
        <property type="entry name" value="GMC_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007867">
        <property type="entry name" value="GMC_OxRtase_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11552">
        <property type="entry name" value="PTHR11552"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05199">
        <property type="entry name" value="GMC_oxred_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00732">
        <property type="entry name" value="GMC_oxred_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000137">
        <property type="entry name" value="Alcohol_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01810">
        <property type="entry name" value="betA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00623">
        <property type="entry name" value="GMC_OXRED_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00624">
        <property type="entry name" value="GMC_OXRED_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5 6" id="KW-0274">FAD</keyword>
    <keyword evidence="2 6" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GMC_OxRdtase_N" evidence="8">
        <location>
            <begin position="79"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="domain" description="GMC_OxRdtase_N" evidence="9">
        <location>
            <begin position="254"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="81"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010790"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000137-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003969"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS00623"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS00624"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG85422.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="552" mass="60388" checksum="2775FA61BC7ABC5C" modified="2017-03-15" version="1">MQADYVVVGAGSAGCAIAYRLAEAGKDVLVIEYGGTDAGPFIQMPAALSYPMNMSHYDWGLKTEPEPHLGGRRLVTPRGKVIGGSSSINGMIYVRGHALDFDHWAESGADGWGYADVLPYFKRMENWDSGGHGGDPAWRGTDGPLHVSRGPRTNPLTKAFVEAGKQAGYDVTGDYNGHQQEGFGPFDATIYKGRRWSAANAYLKPALKRQNCTLVRALARKIVFKDGRACGVEVEKGGQIEVIAAREEVILSASSLNSPKILMLSGIGPAAHLAEHGIEVRADRPGVGQNLQDHLELYIQQAATQPVSLAKHWNLFSKAMIGAQWLFTKAGLGASNQFESAGFIRSKAGVEYPDIQFHFLPMAVRYDGKVAAEGHGYQAHVGPMRSESRGSVTLRSADPKDDPKILFNYMSEESDWEDFRTCIRLTREIFAQEAFEPYRGHEIQPGDDAQTDDELNDFIREHVESAYHPCGTCKIGRRDDPMAVVDQEMRVIGVDGLRLADSSVFPRITNGNLNAPSIMTGEKAADHILGKAPLSPANDVPWVHPNWQTAQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N8T8</accession>
    <name>A0A1M5N8T8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">NitT/TauT family transport system ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1247</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85918.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899955.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1247"/>
    <dbReference type="EnsemblBacteria" id="SHG85918">
        <property type="protein sequence ID" value="SHG85918"/>
        <property type="gene ID" value="SAMN05444003_1247"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="5"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="41"/>
            <end position="48"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG85918.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="264" mass="28906" checksum="32B829C5F8CFBBB8" modified="2017-03-15" version="1">MSPLIDIKGVKHAYSTADGPLPVLDGLDVTVEEGGFCAVVGPSGCGKSTLTRLVAGLMMPDEGEVWLHGEQVKGPRSTVGMAFQNPVLLEWRTILQNVLLPLEIVPNALKGKAAEDRARFLLSLVGLEGFEDKRPSELSGGMRQRASLCRALVHQPDVLILDEPFGALDAFTREDLWQTMHDVKAKEPFTAILITHDLRESIFLGDQVVVLSGRPARTQYVMNIPRSDKPTLDDLYTSEAADRLAILRQQIEIAQGRTEAEVEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NBZ8</accession>
    <name>A0A1M5NBZ8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ubiquinone/menaquinone biosynthesis C-methylase UbiE</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1314</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87018.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900013.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1314"/>
    <dbReference type="EnsemblBacteria" id="SHG87018">
        <property type="protein sequence ID" value="SHG87018"/>
        <property type="gene ID" value="SAMN05444003_1314"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0830">Ubiquinone</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG87018.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="227" mass="25821" checksum="BE6136D56D235CB5" modified="2017-03-15" version="1">MAFNSSRYHLLKVNETFAKGVKAGERVLDAGAGMQPYAHLFAHAIYESADFTKVDKSYAPQTYICDLVDIPVEDRRFDHVVFNQVLEHLPDPIAVLKELRRVLKPGGRIICTCPLFYQEHEQPYDFYRYTQFAHQHMFEQAGFEVSSIDWLEGYYGTASYQLRGLSKNLPLWPKSGEIWARLLALPVATIIRILGSLLAPILARLDQHTDSRGVGYPKNYVVSAKAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NFU1</accession>
    <name>A0A1M5NFU1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein involved in cysteine biosynthesis</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1390</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88347.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900080.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1390"/>
    <dbReference type="EnsemblBacteria" id="SHG88347">
        <property type="protein sequence ID" value="SHG88347"/>
        <property type="gene ID" value="SAMN05444003_1390"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="72"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="125"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="152"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="191"/>
            <end position="214"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG88347.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="234" mass="25950" checksum="DA85D41307A55FA2" modified="2017-03-15" version="1">MIFLDFFKAVSQFADPRFRRVLWLGVGLTIALLVAVYSLFLWLMNPTFEGDITLPIIGPVSWLGDLLSWGSLGLMLILSVFLMIPVASAITSFFLDDVAEAVEDMHYPYLPAVPRTPFYDSVKDTVNFLGILIAANVLAFAIYAVVPFLSVFIFFALNGFLLGREYFQVAAMRRLGREGAKELRRQNTGKIWFAGCLMALPLSIPLINLFIPILGAATFTHLYHRISGTAATSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NGG2</accession>
    <name>A0A1M5NGG2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">SlyX protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1404</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1404"/>
    <dbReference type="EnsemblBacteria" id="SHG88611">
        <property type="protein sequence ID" value="SHG88611"/>
        <property type="gene ID" value="SAMN05444003_1404"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007236">
        <property type="entry name" value="SlyX"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04102">
        <property type="entry name" value="SlyX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG88611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="69" mass="7676" checksum="24409E9C57C676E7" modified="2017-03-15" version="1">MQAMAQTDLEEQIAHLTRSVDELSDIVAQQATELALAQKRIAMLMEREASREFEGGGSVPLADQKPPHW</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NGN6</accession>
    <name>A0A1M5NGN6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Histidinol-phosphate aminotransferase</fullName>
            <ecNumber evidence="7">2.6.1.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Imidazole acetol-phosphate transaminase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">hisC</name>
        <name evidence="9" type="ORF">SAMN05444003_1378</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>2-oxoglutarate + L-histidinol phosphate = 3-(imidazol-4-yl)-2-oxopropyl phosphate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:23744"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:57766"/>
            <dbReference type="ChEBI" id="CHEBI:57980"/>
            <dbReference type="EC" id="2.6.1.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 7">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3 7">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 7/9.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5 7">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 7">Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.9" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88133.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900070.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1378"/>
    <dbReference type="EnsemblBacteria" id="SHG88133">
        <property type="protein sequence ID" value="SHG88133"/>
        <property type="gene ID" value="SAMN05444003_1378"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00012"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004400">
        <property type="term" value="F:histidinol-phosphate transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01023">
        <property type="entry name" value="HisC_aminotrans_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005861">
        <property type="entry name" value="HisP_aminotrans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01141">
        <property type="entry name" value="hisC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="6 7 9" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="7" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="7" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="8">
        <location>
            <begin position="29"/>
            <end position="354"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="7">
        <location>
            <position position="219"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG88133.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="361" mass="38402" checksum="97E55F67982F732F" modified="2017-03-15" version="1">MGSMITPQPGIMEIALYQGGKSEIAGRSDVLKLSSNENPLGPPPSAIAAITAAATETHRYPSTDHAGLRAAISDVYGLEADRVICGVGSDEVLQFICQAFTGPGDEIIHTEHGFSMYPILAHMAGATPVQVAEVDRQVSVDNILAAVTERTRVVMLTNPGNPTGTIIPESEIERLADGLPKGVILVLDCAYIEYAAGHDGGEALARSRENVIMTRTFSKLYGLGGLRIGFGYGPKALIDVMTRIRQPYNLSVVQLVAAEAAALDLEWAKTSVEMNASERARLTCGLRQQGIACDDSHTNFVLARFADEGEAAAMETAFQAAGILVRKVGGYGFPEGLRITVGRPEDNDRVLDAVAKFKDAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NIT5</accession>
    <name>A0A1M5NIT5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">tRNA threonylcarbamoyl adenosine modification protein YeaZ</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1442</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89402.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900126.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1442"/>
    <dbReference type="EnsemblBacteria" id="SHG89402">
        <property type="protein sequence ID" value="SHG89402"/>
        <property type="gene ID" value="SAMN05444003_1442"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002949">
        <property type="term" value="P:tRNA threonylcarbamoyladenosine modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000905">
        <property type="entry name" value="Gcp-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022496">
        <property type="entry name" value="T6A_TsaB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11735">
        <property type="entry name" value="PTHR11735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11735:SF11">
        <property type="entry name" value="PTHR11735:SF11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00814">
        <property type="entry name" value="TsaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03725">
        <property type="entry name" value="T6A_YeaZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TsaD" evidence="2">
        <location>
            <begin position="35"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="198"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG89402.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="220" mass="23458" checksum="3B2E9D5EA6417199" modified="2017-03-15" version="1">MPPKPTILAFDTSAAHCAAALLCEGRLAQRVDEMARGQAEHLMPMLEDMLQADGLMWSDLDAIGVGVGPGNFTGIRISVSAARGLALGLGKPAIGVSNLEAQAYGLEGILVSCLDARRDRAYVQVFGDIGSASQPTLCDMRRDDMPPLNPKSEPKIVGNVATQIGDLMGWQPIRQRGTTIEAITQIAARRLHSTTERPAPLYIRTADAAPPRDLPPTVIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NK50</accession>
    <name>A0A1M5NK50_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8 18">Succinate dehydrogenase flavoprotein subunit</fullName>
            <ecNumber evidence="7 18">1.3.5.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="21" type="ORF">SAMN05444003_1467</name>
    </gene>
    <organism evidence="21 22">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="21 22" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="21 22">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 18">
            <text>a quinone + succinate = a quinol + fumarate</text>
            <dbReference type="Rhea" id="RHEA:40523"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:29806"/>
            <dbReference type="ChEBI" id="CHEBI:30031"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
            <dbReference type="EC" id="1.3.5.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 18">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="5 18">Carbohydrate metabolism; tricarboxylic acid cycle; fumarate from succinate (bacterial route): step 1/1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4 18">Cell inner membrane</location>
            <topology evidence="4 18">Peripheral membrane protein</topology>
            <orientation evidence="4 18">Cytoplasmic side</orientation>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Membrane</location>
            <topology evidence="3">Peripheral membrane protein</topology>
            <orientation evidence="3">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6 18">Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.</text>
    </comment>
    <dbReference type="EC" id="1.3.5.1" evidence="7 18"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89956.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900149.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1467"/>
    <dbReference type="EnsemblBacteria" id="SHG89956">
        <property type="protein sequence ID" value="SHG89956"/>
        <property type="gene ID" value="SAMN05444003_1467"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00223">
        <property type="reaction ID" value="UER01005"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008177">
        <property type="term" value="F:succinate dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022900">
        <property type="term" value="P:electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.700.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003953">
        <property type="entry name" value="FAD-binding_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003952">
        <property type="entry name" value="FRD_SDH_FAD_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037099">
        <property type="entry name" value="Fum_R/Succ_DH_flav-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015939">
        <property type="entry name" value="Fum_Rdtase/Succ_DH_flav-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030664">
        <property type="entry name" value="SdhA/FrdA/AprA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027477">
        <property type="entry name" value="Succ_DH/fumarate_Rdtase_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011281">
        <property type="entry name" value="Succ_DH_flav_su_fwd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014006">
        <property type="entry name" value="Succ_Dhase_FrdA_Gneg"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11632">
        <property type="entry name" value="PTHR11632"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00890">
        <property type="entry name" value="FAD_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02910">
        <property type="entry name" value="Succ_DH_flav_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46977">
        <property type="entry name" value="SSF46977"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56425">
        <property type="entry name" value="SSF56425"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01816">
        <property type="entry name" value="sdhA_forward"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01812">
        <property type="entry name" value="sdhA_frdA_Gneg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00504">
        <property type="entry name" value="FRD_SDH_FAD_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="18" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="18" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="13 18" id="KW-0249">Electron transport</keyword>
    <keyword evidence="12 18" id="KW-0274">FAD</keyword>
    <keyword evidence="11 18" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="15 18" id="KW-0472">Membrane</keyword>
    <keyword evidence="14 18" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="22" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 18" id="KW-0813">Transport</keyword>
    <keyword evidence="10 18" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="domain" description="FAD_binding_2" evidence="19">
        <location>
            <begin position="12"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="domain" description="Succ_DH_flav_C" evidence="20">
        <location>
            <begin position="463"/>
            <end position="601"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="16">
        <location>
            <position position="290"/>
        </location>
    </feature>
    <feature type="modified residue" description="Tele-8alpha-FAD histidine" evidence="17">
        <location>
            <position position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000030"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004287"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00004894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00008040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00012792"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00019965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="PIRSR" id="PIRSR611281-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="PIRSR" id="PIRSR611281-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="RuleBase" id="RU362051"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="19">
        <source>
            <dbReference type="Pfam" id="PF00890"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="20">
        <source>
            <dbReference type="Pfam" id="PF02910"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="EMBL" id="SHG89956.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="22">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="601" mass="65116" checksum="06953D7E73554805" modified="2017-03-15" version="1">MAAYEYETHTYDAIVVGAGGAGLRATLGLAEQGLKTACITKVFPTRSHTVAAQGGIAASLSNMGPDHWQWHMYDTVKGSDWLGDTDAMEYLAREAPKAVYELEHYGVPFSRTEKGEIYQRPFGGHTTEFGEGPPVQRTCAAADRTGHAILHTLYGQSVKQKAEFFIEYFATDLIMSEDGQCQGVVAWKLDDGTMHVFNAKTTVLATGGYGRAYFSATSAHTCTGDGGGMVARQGLPLQDMEFVQFHPTGIYGAGCLITEGARGEGGYLTNSEGERFMERYAPTYKDLASRDVVSRCMTMEIREGRGVGANGDHIHLHLNHLPPETLDLRLPGISESARIFAGVDLTKEPIPVLPTVHYNMGGIPTNYWGEVLNPTKDDPDAIVPGLMAVGEAGCASVHGANRLGSNSLIDLVVFGRAAAIKAGEVVDADAPNQALNQASVDYAFDRFDNVRNANGATGTAELRLEMQKAMQEDAAVFRTDKTLAEGVKKMEGIAGKMDDLKVTDRSLVWNSDLMETLELTNLMPNALATIVGAEARKESRGAHAHEDYPDRDDKKWRKHTLATVDGPKTQLSYRPVHLDPLTTTAEGGVDLKKIAPKARVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NKQ9</accession>
    <name>A0A1M5NKQ9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Beta-methylmalyl-CoA dehydratase</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">2-methylfumaryl-CoA hydratase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Mesaconyl-CoA hydratase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1470</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(2R,3S)-beta-methylmalyl-CoA = 2-methylfumaryl-CoA + H2O</text>
            <dbReference type="Rhea" id="RHEA:38263"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:75634"/>
            <dbReference type="ChEBI" id="CHEBI:75635"/>
            <dbReference type="EC" id="4.2.1.148"/>
        </reaction>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90025.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900151.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1470"/>
    <dbReference type="EnsemblBacteria" id="SHG90025">
        <property type="protein sequence ID" value="SHG90025"/>
        <property type="gene ID" value="SAMN05444003_1470"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016833">
        <property type="term" value="F:oxo-acid-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016790">
        <property type="entry name" value="Thiol_ester_hydratase_Rv0216"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF021494">
        <property type="entry name" value="Rv0216_prd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR021494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG90025.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="341" mass="37266" checksum="069BF0886D1E5A72" modified="2017-03-15" version="1">MSKTNAGRFFEDYRLGEVIHHAVPRTVSGGERAMYHALYPARGALYSSDAFAQSCGLSESPMDDLIAFHLVFGKTVPDISLNAVANLGYAEGRWLRPVWPGDTLRSSSEVIGLKQNSNGKSGVVWVRTTGRNQHGEAVLEYVRWVMVRRRAEGDAPATVIPELAKSVAANDLVIPEGLDFSEYDFEQAGEAHRFGDYAIGEVIDHVDGVTIEEAEHMMATRLWQNTAKVHFDATNRADGQRLIYGGHVISLARALSFNGLANAQMMVALNGGAHANPCFSGDTVRAWSEVLDKAETDAPGVGAIRLRLVATKGKIGEWKTDDGKYHPSVLLDLDYWALLPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NN37</accession>
    <name>A0A1M5NN37_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized conserved protein, MAPEG superfamily</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1483</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90353.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900162.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG90353">
        <property type="protein sequence ID" value="SHG90353"/>
        <property type="gene ID" value="SAMN05444003_1483"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.550">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023352">
        <property type="entry name" value="MAPEG-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001129">
        <property type="entry name" value="Membr-assoc_MAPEG"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01124">
        <property type="entry name" value="MAPEG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161084">
        <property type="entry name" value="SSF161084"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="7"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="111"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG90353.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="132" mass="14324" checksum="F945DE99C85DF99B" modified="2017-03-15" version="1">MTSELTYLLYTVILLIVHVLFQATLSDLSKGLGWALGPQDEPRDQNAVADRVQRALRNFLETFPAFAALALMLAVTDSGTAQSALGAAVYFWARIAYIPAFASGLPLVRSIAWFTSLGGLLLMILPFFISAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NSE6</accession>
    <name>A0A1M5NSE6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">HAD-superfamily class IIA hydrolase, TIGR01459</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1572</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG92462.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1572"/>
    <dbReference type="EnsemblBacteria" id="SHG92462">
        <property type="protein sequence ID" value="SHG92462"/>
        <property type="gene ID" value="SAMN05444003_1572"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006357">
        <property type="entry name" value="HAD-SF_hydro_IIA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006356">
        <property type="entry name" value="HAD-SF_hydro_IIA_hyp3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13344">
        <property type="entry name" value="Hydrolase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01459">
        <property type="entry name" value="HAD-SF-IIA-hyp4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG92462.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="318" mass="34620" checksum="50DE4E623004792C" modified="2017-03-15" version="1">MPLRTYSLCTPCVRSVYLKNIEIRACPMTQIIQNFSDISAQYDAAFVDLWGCMHNGIEAFPEAVKAMQDFRAQGGAVVLVTNSPRPRDSVADQIEGMGVPRDAYDTIATSGDSARSAMYQGAVGSRIWFMGESPRDDAFFNPLKIIENPVEIEKVGLRDAEGIVCCGPFDPMADPEVNRADFLLAKEMGLKLLCANPDIVVDRGETREWCAGALAKLYADMGGESLYFGKPHPPIYDLARRRLAALGKTSSDPRIICIGDGIITDILGAQQEDLDSLYITGGLAAAETKTKTDPNPEALSAYLQTEMIGTTFAIGFLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NUB2</accession>
    <name>A0A1M5NUB2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Autotransporter secretion inner membrane protein TamB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_1599</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93151.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900265.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1599"/>
    <dbReference type="EnsemblBacteria" id="SHG93151">
        <property type="protein sequence ID" value="SHG93151"/>
        <property type="gene ID" value="SAMN05444003_1599"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009306">
        <property type="term" value="P:protein secretion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007452">
        <property type="entry name" value="TamB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04357">
        <property type="entry name" value="TamB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009912701" evidence="5">
        <location>
            <begin position="19"/>
            <end position="1412"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG93151.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="1412" mass="147149" checksum="1D1EAC4AD48DD4F9" modified="2017-03-15" version="1">MRWFILSLLLFWPVALWAQSQEEEDKGFITNLLEESLSTENQTVTIDGFSGVITGNPGFDRLTIADEDGVWLIMENAKLKWRQTALVFGAIDINELSADLLIIERRPVGEPKTTTPTAEATPFSLPELPLSVKVDGFVIERVELGETILGEAIDFTVNGSADLNNGEGSVDLTATRLDDVEGQFLVAGSYSNETQFLDVNVDLQEAPSGIVSHMLRLPGDPSVELKIEGNGPITDFTASLSLATNGVERLSGTFTLKSENGTQSIILALNGDITPLLPPEYAEFFGPDVSLVASVQLSDDGAIVVDQLEMTADHLQLEGSAEIASTGWPRRLDLTGTMATPDGSPVLLPIPGEKVYVQEMQFEVAFDASVSDEFTVSFDLTDLSRGDLSIETIALDGSGIIRELERQFDANFTYLADGIAVGSEDLGDALGERINGVLEIANGPDGELVVDSFTLEGPGIAAEANGVIRTSGGPEIESQVSLLASDLGRFAGLIGLPLDGSGALEILSTVRPLDGIFDVQLLGATQDLAIGQDRIDPLLAGRGNVAADFGRDTTGTRVDNLFVETPAVKISGRAILTSIESDVALTAEITDLGLVEPSISGAAKVAVNASQNEAGDFVFDAAGEIPDATLSGSGTYSLNDTGNTLQGQIEAAVSDLSTYARIAQRDIGGAIELSAQGVLLDDGQRIDAEMTATTTDLQIGDERIDPLLQGPGRLIADLARVGTNRYLLKELSFETDALTLDAKGAASLPSDIEGVLSANLLQPELVIPGVTGPISAEITARKVENETAITAVIEGEGIDVNADVELVRNEGILSLDGMASAMIASLEPFQGIAGLPLTGSISADVSGSVQSDLQVIDLDVSASGSDLGIGNPTVDQLIAGESSLSGSVERDAGTFLLEDFVVETAEVQINADIETDGSAGTADFSAQLRDIGLFTDVVSGPLTATGNAQRSAGVWDIDVDAQGPGGINAQVDGQIYDGFDLDLIVTGGGPLDLMNDAIAPRRISGFADVNLAIVGPPAVTSVSGTISTSGTRLTLPTFEEALENITGLVQLSNGNAAVDMTAAVVTGGGIEISGPVSLQAPFNGDISVDINNVVLRDPTLFETSVDGGIRVQGPLAGGATISGALELGETEVRVPSSSVGRLGELPEVIHIGESAAVDQTIARAGLTAPQSTKVNTANSGPAYRLDISVNAPSRIFIRGRGLDAELGGGLTLAGTTNIVAPIGQFDLIRGRLSILTQRFDLTEGSATIQGDFIPYIRLVAETEAPTGTNIRIIIEGPLSEPEIGLESDPDLPPDEALAQLIFGRNLDEITPFQAVRLASAVSTLAGNGGGALNSFREDLGLDDFDIILDGDGNAAVRAGAYLGENLYTDVTVSSDGSTEINLNLDISPSVTAKGTVDSDGESSIGIFFERDY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NWP5</accession>
    <name>A0A1M5NWP5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1617</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG93569">
        <property type="protein sequence ID" value="SHG93569"/>
        <property type="gene ID" value="SAMN05444003_1617"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="28"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="54"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="91"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG93569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="119" mass="12474" checksum="6B8FD6D3C0A8C119" modified="2017-03-15" version="1">MVGIVIAAVAVTLAYVFEAPNSLGAHPFWDQQVLVIGAGIGAILGLISLPLPNVARIGGFLALTVLAYLAASWGKETFAASYAEDAFAGRIWYFGWFATVAAATAFLFSLATPKKALPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NWP6</accession>
    <name>A0A1M5NWP6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized conserved protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1630</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93885.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900292.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1630"/>
    <dbReference type="EnsemblBacteria" id="SHG93885">
        <property type="protein sequence ID" value="SHG93885"/>
        <property type="gene ID" value="SAMN05444003_1630"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003409">
        <property type="entry name" value="MORN"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02493">
        <property type="entry name" value="MORN"/>
        <property type="match status" value="18"/>
    </dbReference>
    <dbReference type="SMART" id="SM00698">
        <property type="entry name" value="MORN"/>
        <property type="match status" value="18"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013133044" evidence="2">
        <location>
            <begin position="26"/>
            <end position="476"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="456"/>
            <end position="476"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG93885.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="476" mass="50259" checksum="C650AD72FDBC4054" modified="2017-03-15" version="1">MQRFGTSLGLALGIAVMASPVLSQAIEIKQYDDGGVYEGTFVNGKQHGQGTYRLPNGYEYSGEWFEGEIRGQGTARFPNGSIYEGTFALGKPDGTGKITFADGGTFEGDWVAGNITGRGIANYANGVSYEGEFRNAMHNGVGTLRSPGGYVYEGPWINGVKEGDGKITYPDGSVYEGNLSNGERDGFGKITMADGLIYEGSWVEGQIEGEGKLTQPNGDVYEGTLLGGQRQGSGSVTYANGDVYIGGFDADRRHGQGTFQGTDGYFYAGSWVDGKIDGQGEITYPDGSVYVGSFKSDLADGEGIITYADGSSYEGSWQNGVINGPGKAIYANGLVYEGDFLNAKNHGTGKMTYSDGYTYVGDWAEGQRNGQGVATYADGTVYEGGFMNGQRHGTGSITLPDGFTYVGDWLEGEISGTGVATYTNGDVYEGTFLRGRRQGPGTMRYATGEQATGEWADGALLPGGTTTPAPAQTDDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PKU4</accession>
    <name>A0A1M5PKU4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF2059 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1702</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02396.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900518.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1702"/>
    <dbReference type="EnsemblBacteria" id="SHH02396">
        <property type="protein sequence ID" value="SHH02396"/>
        <property type="gene ID" value="SAMN05444003_1702"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018637">
        <property type="entry name" value="DUF2059"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09832">
        <property type="entry name" value="DUF2059"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013177880" description="DUF2059 domain-containing protein" evidence="1">
        <location>
            <begin position="22"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="domain" description="DUF2059" evidence="2">
        <location>
            <begin position="90"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH02396.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="176" mass="19897" checksum="2614BEBF82259F2C" modified="2017-03-15" version="1">MRKIILWYSIMTMCFVSNAIADPKDDAKVIASASITPEILEETFLSLRPSVVASLSRAYSERNISPPATDEFYDLLLEELTNVIGELTQDVVVDYYSNNFSENELSEIATFFRSDAGQAYVSRTPDMMRQMTEVTNTFALEAIRIAANRMESRIQEEGLVVVEDPDHLSRLLDVLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PNV3</accession>
    <name>A0A1M5PNV3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1751</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03388.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900557.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1751"/>
    <dbReference type="EnsemblBacteria" id="SHH03388">
        <property type="protein sequence ID" value="SHH03388"/>
        <property type="gene ID" value="SAMN05444003_1751"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH03388.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="253" mass="27242" checksum="5BBCDAF3A4151F2C" modified="2017-03-15" version="1">MTTARFPDLDGKTVFLTGGGSGIGAALTKGFVDQGAKVAFVGRSDYSDFANELGETAQTTPLFIQCDVTDTQALQKAMQQAVDQFGPLGVLVNNAANDLRMEAIDVTEDQWQDMIDVNLKQYFFACQQAARLMPDGGTIINFSSISYMFGAAGMTPYVTSNAGITGMTRALAREWGDRRIRVNALAPGWVLTEKQLDKWATPEGLAKYQAEQCIPEMMKPEDIVGPTLFLASDASSMVTSQVLVVDAGRVVTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PQ65</accession>
    <name>A0A1M5PQ65_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1767</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03679.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1767"/>
    <dbReference type="EnsemblBacteria" id="SHH03679">
        <property type="protein sequence ID" value="SHH03679"/>
        <property type="gene ID" value="SAMN05444003_1767"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH03679.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="128" mass="14080" checksum="D1405304EF35B344" modified="2017-03-15" version="1">MRLNCIVLPLLLAACASPQESCISDANRELSIITGLVNETRANIARGFAVGTEEDVIVRRGLCDGETEDGVAIKVACDRTITRERRVPVAIDLNAERAKLASLVERQTELRSNLNTRVDQCRVQFPES</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PT17</accession>
    <name>A0A1M5PT17_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1823</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900879.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1823"/>
    <dbReference type="EnsemblBacteria" id="SHH04781">
        <property type="protein sequence ID" value="SHH04781"/>
        <property type="gene ID" value="SAMN05444003_1823"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011719">
        <property type="entry name" value="CHP02058"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037103">
        <property type="entry name" value="Tubulin/FtsZ-like_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34784">
        <property type="entry name" value="PTHR34784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09585">
        <property type="entry name" value="Lin0512_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH04781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="114" mass="12492" checksum="0A26787A599C05A5" modified="2017-03-15" version="1">MAKCRVLTEFGMGSSLRRQDYTQAAKRALQDALWHNSINMAELFGFPKEAMIIDVDIAVQNPKAVDINSLKDIFPYGQVAIATSHGGLDVPRPDGNPTVIANAAINVSFEMERT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PU39</accession>
    <name>A0A1M5PU39_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Aromatic amino acid aminotransferase apoenzyme</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1844</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05222.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900638.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1844"/>
    <dbReference type="EnsemblBacteria" id="SHH05222">
        <property type="protein sequence ID" value="SHH05222"/>
        <property type="gene ID" value="SAMN05444003_1844"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006520">
        <property type="term" value="P:cellular amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000796">
        <property type="entry name" value="Asp_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11879">
        <property type="entry name" value="PTHR11879"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00799">
        <property type="entry name" value="TRANSAMINASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="4">
        <location>
            <begin position="28"/>
            <end position="389"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH05222.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="394" mass="42893" checksum="DA26D6029945C159" modified="2017-03-15" version="1">MFDKLSQQPADKILALMAQYRADPRDSKVDLGVGVYKDASGNTPVMRAVKEAERRILADQGSKAYVGLAGDPEFSNVMIDLVLGDTIPRDRIGAVATPGGTGAIRQALELIKLADPQATVWLSNPTWPNHPSIIKYLDMPTADYRYFDSETRGVDFDGMIEDLGQVKAGDVVLLHGCCHNPTGANLTADQMAQAITTIKAQGAMPLVDIAYQGFGDGLDQDAAATRQIASAFDNCLIAASCSKNFGIYRERTGILMAIAKDADQAALAQQNMAFLNRQNYSFPPDHGARVVTTILQDAALRADWESELDETRNGMLALRQQLADELKRLTNTDRFDFLADHRGMFSRLGTTPEMVEKLRADHGIYMVGDSRMNIAGLNEKTVPILAKAIVEAGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PY14</accession>
    <name>A0A1M5PY14_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Sugar fermentation stimulation protein homolog</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">sfsA</name>
        <name evidence="4" type="ORF">SAMN05444003_1924</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the SfsA family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06745.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900705.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1924"/>
    <dbReference type="EnsemblBacteria" id="SHH06745">
        <property type="protein sequence ID" value="SHH06745"/>
        <property type="gene ID" value="SAMN05444003_1924"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00095">
        <property type="entry name" value="SfsA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005224">
        <property type="entry name" value="SfsA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040452">
        <property type="entry name" value="SfsA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041465">
        <property type="entry name" value="SfsA_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30545">
        <property type="entry name" value="PTHR30545"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03749">
        <property type="entry name" value="SfsA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17746">
        <property type="entry name" value="SfsA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00230">
        <property type="entry name" value="sfsA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SfsA_N" evidence="3">
        <location>
            <begin position="13"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="domain" description="SfsA" evidence="2">
        <location>
            <begin position="84"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00095"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF17746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH06745.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="233" mass="25875" checksum="FC86CC668A60E272" modified="2017-03-15" version="1">MKFATPLIPARLIKRYKRFLADIRLEDGREITAHCANPGSMMGLAEPDTKIWVEPNNDPKKKLKYGWRLVDHENGHFTGVDTSVPNRALKAAFIAGEVPRFDGYDLVRPEVKYGENSRIDFLLSGAGLPDCYVEVKSVTLSRSAGLAEFPDSVTARGAKHLDELARVVQQGHRALMLYLVQRTDCHTVTLAADIDPHYTEHFKAAEGLEVMALDCLIDPNGVSVGKPLPFKHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PZ34</accession>
    <name>A0A1M5PZ34_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Dipeptide epimerase</fullName>
            <ecNumber evidence="5">5.1.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1906</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="4 5">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="4 5">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the mandelate racemase/muconate lactonizing enzyme family.</text>
    </comment>
    <dbReference type="EC" id="5.1.1.-" evidence="5"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06453.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1906"/>
    <dbReference type="EnsemblBacteria" id="SHH06453">
        <property type="protein sequence ID" value="SHH06453"/>
        <property type="gene ID" value="SAMN05444003_1906"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016855">
        <property type="term" value="F:racemase and epimerase activity, acting on amino acids and derivatives"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03319">
        <property type="entry name" value="L-Ala-DL-Glu_epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034603">
        <property type="entry name" value="Dipeptide_epimerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036849">
        <property type="entry name" value="Enolase-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029017">
        <property type="entry name" value="Enolase-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029065">
        <property type="entry name" value="Enolase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013342">
        <property type="entry name" value="Mandelate_racemase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034593">
        <property type="entry name" value="Mandelate_racemase_DgoD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013341">
        <property type="entry name" value="Mandelate_racemase_N_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48080">
        <property type="entry name" value="PTHR48080"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13378">
        <property type="entry name" value="MR_MLE_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02746">
        <property type="entry name" value="MR_MLE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00010">
        <property type="entry name" value="dipeptide_epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00922">
        <property type="entry name" value="MR_MLE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51604">
        <property type="entry name" value="SSF51604"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54826">
        <property type="entry name" value="SSF54826"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4 5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MR_MLE" evidence="6">
        <location>
            <begin position="140"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor; specific for (R)-substrate epimerization" evidence="3">
        <location>
            <position position="159"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor; specific for (S)-substrate epimerization" evidence="3">
        <location>
            <position position="255"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="184"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="210"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="233"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR634603-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR634603-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU366006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH06453.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="336" mass="36058" checksum="A22388D35D98591A" modified="2017-03-15" version="1">MPPAEVFSAQKTGGVVKVSVCKDVFQLAQVFTISRGSRTEAQVLTVEVERDGVTGFGECVPYARYDETLDSVIAEIEGLPDQFDRVALQGLLPAGAARNAVDCALWDLEAKAAGKRVWELIGEPKPQPEITAYTLSLDTPDKMQTQAAENAHRPLLKIKLGTPDDMARLEAVRRGAPDARIIVDANEGWDADVYSDLAPHLLRLGVQMVEQPMPAGADDMLGEIERPLPVCADESCHDRASLPALKGKYDMVNIKLDKTGGLTEALALKQEAAAQGYQIMVGCMVGSSLAMAPATILAQGVAFTDLDGPLLLAEDRDEPLNFDQDGVHPPAATLWG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PZ36</accession>
    <name>A0A1M5PZ36_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 3">Methionine aminopeptidase</fullName>
            <shortName evidence="2">MAP</shortName>
            <shortName evidence="2">MetAP</shortName>
            <ecNumber evidence="2 3">3.4.11.18</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Peptidase M</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">map</name>
        <name evidence="5" type="ORF">SAMN05444003_1923</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 2">Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 3">
            <text>Release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.</text>
            <dbReference type="EC" id="3.4.11.18"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 3">
            <name>Co(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:48828"/>
        </cofactor>
        <cofactor evidence="2 3">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <cofactor evidence="2 3">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <cofactor evidence="2 3">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
        <text evidence="2 3">Binds 2 divalent metal cations per subunit. Has a high-affinity and a low affinity metal-binding site. The true nature of the physiological cofactor is under debate. The enzyme is active with cobalt, zinc, manganese or divalent iron ions. Most likely, methionine aminopeptidases function as mononuclear Fe(2+)-metalloproteases under physiological conditions, and the catalytically relevant metal-binding site has been assigned to the histidine-containing high-affinity site.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Monomer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.4.11.18" evidence="2 3"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06729.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900704.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1923"/>
    <dbReference type="EnsemblBacteria" id="SHH06729">
        <property type="protein sequence ID" value="SHH06729"/>
        <property type="gene ID" value="SAMN05444003_1923"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070006">
        <property type="term" value="F:metalloaminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046914">
        <property type="term" value="F:transition metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070084">
        <property type="term" value="P:protein initiator methionine removal"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01086">
        <property type="entry name" value="MetAP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01974">
        <property type="entry name" value="MetAP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036005">
        <property type="entry name" value="Creatinase/aminopeptidase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000994">
        <property type="entry name" value="Pept_M24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001714">
        <property type="entry name" value="Pept_M24_MAP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002467">
        <property type="entry name" value="Pept_M24A_MAP1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00557">
        <property type="entry name" value="Peptidase_M24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00599">
        <property type="entry name" value="MAPEPTIDASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55920">
        <property type="entry name" value="SSF55920"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00500">
        <property type="entry name" value="met_pdase_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00680">
        <property type="entry name" value="MAP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 5" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 3" id="KW-0645">Protease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_M24" evidence="4">
        <location>
            <begin position="22"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="87"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="104"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="115"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="178"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>2</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="185"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="211"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>2</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002521"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003653"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH06729.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="268" mass="28877" checksum="43B7EB12194C7698" modified="2017-03-15" version="1">MTDKGRITKDGIRIYEPSDFAGMHKAGQLTAKILDDIAELVVPGATTGSIDDAIRNMVEEAGATSATIGYKGYQHASCISINHVVCHGIPGDKKLKDGDIVNIDVTVIEDGWFGDSSRMYVAGKLSRKAERLIQVTHDSLMKGIEAAKPGNTFGDIGHAIQSYAESHRMSVVRDFCGHGLGRVFHAPPNVLHYGRAGTGAVLEEGMFFTIEPMINLGRPETKVLSDDWTAVTRDKSLSAQFEHSIGITADGCDIFTLSPAGKFHPTYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q1M8</accession>
    <name>A0A1M5Q1M8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Membrane associated serine protease, rhomboid family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1980</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900750.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1980"/>
    <dbReference type="EnsemblBacteria" id="SHH07842">
        <property type="protein sequence ID" value="SHH07842"/>
        <property type="gene ID" value="SAMN05444003_1980"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022764">
        <property type="entry name" value="Peptidase_S54_rhomboid_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035952">
        <property type="entry name" value="Rhomboid-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01694">
        <property type="entry name" value="Rhomboid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF144091">
        <property type="entry name" value="SSF144091"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0645">Protease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="20"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="76"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="111"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="137"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="169"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="193"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="domain" description="Rhomboid" evidence="6">
        <location>
            <begin position="73"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH07842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="217" mass="23531" checksum="429FF9D1EDBFB797" modified="2017-03-15" version="1">MSEDNQKIATLLDGTRPAIWTIVALCVAIEAVLTLSDWGVLFSTSLRFRVYEYAGFWSGLLGDWTPNYPLQPYTMFLTYGFLHAGLGHLIVNMITLVTAGNLVVERVGTKGFLILYSVAIVGGGIGYGLLAPTLAPMVGASGALFGLVGGLLAWSYIDRFNLNEALWPVARAALFLVGLNLVLWWAMDGQLAWQTHLGGFIAGWIGALLIDPRPIEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q270</accession>
    <name>A0A1M5Q270_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">UvrABC system protein C</fullName>
            <shortName evidence="7">Protein UvrC</shortName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Excinuclease ABC subunit C</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">uvrC</name>
        <name evidence="11" type="ORF">SAMN05444003_1966</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Interacts with UvrB in an incision complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the UvrC family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07563.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900900.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1966"/>
    <dbReference type="EnsemblBacteria" id="SHH07563">
        <property type="protein sequence ID" value="SHH07563"/>
        <property type="gene ID" value="SAMN05444003_1966"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009380">
        <property type="term" value="C:excinuclease repair complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009381">
        <property type="term" value="F:excinuclease ABC activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006289">
        <property type="term" value="P:nucleotide-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009432">
        <property type="term" value="P:SOS response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.340">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00203">
        <property type="entry name" value="UvrC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041663">
        <property type="entry name" value="DisA/LigA_HHH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000305">
        <property type="entry name" value="GIY-YIG_endonuc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035901">
        <property type="entry name" value="GIY-YIG_endonuc_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003583">
        <property type="entry name" value="Hlx-hairpin-Hlx_DNA-bd_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010994">
        <property type="entry name" value="RuvA_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001943">
        <property type="entry name" value="UVR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036876">
        <property type="entry name" value="UVR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004791">
        <property type="entry name" value="UvrC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001162">
        <property type="entry name" value="UvrC_RNase_H_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038476">
        <property type="entry name" value="UvrC_RNase_H_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01541">
        <property type="entry name" value="GIY-YIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12826">
        <property type="entry name" value="HHH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02151">
        <property type="entry name" value="UVR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08459">
        <property type="entry name" value="UvrC_HhH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00465">
        <property type="entry name" value="GIYc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00278">
        <property type="entry name" value="HhH1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46600">
        <property type="entry name" value="SSF46600"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47781">
        <property type="entry name" value="SSF47781"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82771">
        <property type="entry name" value="SSF82771"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00194">
        <property type="entry name" value="uvrC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50164">
        <property type="entry name" value="GIY_YIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50151">
        <property type="entry name" value="UVR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50165">
        <property type="entry name" value="UVRC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 7" id="KW-0227">DNA damage</keyword>
    <keyword evidence="3 7" id="KW-0228">DNA excision</keyword>
    <keyword evidence="5 7" id="KW-0234">DNA repair</keyword>
    <keyword evidence="4 7" id="KW-0267">Excision nuclease</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7" id="KW-0742">SOS response</keyword>
    <feature type="domain" description="GIY-YIG" evidence="9">
        <location>
            <begin position="28"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="domain" description="UVR" evidence="8">
        <location>
            <begin position="216"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="domain" description="UVRC" evidence="10">
        <location>
            <begin position="267"/>
            <end position="497"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50164"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50165"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH07563.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="625" mass="69256" checksum="01ADDC382DD6AC92" modified="2017-03-15" version="1">MSHDIQATQIVALKGYERIQSYLKTLDSSPGVYRMLDEDSRVLYVGKAKNLKARVSSYARPTGHSGRIARMISETASMMFLTTGSETEALLLEQNLIKQLKPRYNVLLRDDKSFPNILVPSEHPFPQIKKHRGAKKEKGKYYGPFAGAGSVNRTLNQLQRVFLLRNCSDSDFATRTRPCLQYQIKRCSGPCVGLISESDYAANVKSAEKFLSGRTKGIQESLAKEMQAASKAMEFEKAAALRDRIKALTQVQSSQGINPQGVAEADIFALHIDGGQACVQVFFIRANQNWGNHDYYPRISGEEDPMEVMEAFVGQFYTTREPPRMVLLSHGLDDQDLMAAALAEKAGRKFDLQVPQRGEKADLVKGALRNARESLARKMSESATQGRLLKGVAEAFDLPEPPKRIEVYDNSHIQGAHAVGAMIVAGPEGFEKNQYRKFNIKGDDLTPGDDFGMMKEVLARRFKRLLKEDPVRTEGTWPDLLLIDGGAGQVSAVREIMDDLNVSDVAMVGVAKGEDRDAGKEEFHRTGKSVMALRHNDPVLYFIQRMRDEAHRFAIGTHRAKRSKAIGATPLDDVPGVGATRKRALLAHFGSAKAVSRANLSDLKAVDGISEAMAQTIYDFFHESS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-06-02" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q5G8</accession>
    <name>A0A1M5Q5G8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Predicted dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2051</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09166.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH09166">
        <property type="protein sequence ID" value="SHH09166"/>
        <property type="gene ID" value="SAMN05444003_2051"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004104">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000683">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01408">
        <property type="entry name" value="GFO_IDH_MocA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02894">
        <property type="entry name" value="GFO_IDH_MocA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GFO_IDH_MocA" evidence="1">
        <location>
            <begin position="3"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="GFO_IDH_MocA_C" evidence="2">
        <location>
            <begin position="136"/>
            <end position="345"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH09166.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="352" mass="37997" checksum="9F87A2C573BD892A" modified="2017-03-15" version="1">MTIRLLILGTGGMANAHVEAYAQMPDVTVVAGVDTDPKRLEEFMAKHSIPNGFASLQEALDWGEFDAVSNVTPDAVHHPTTLPLLAAGKHVLCEKPLAANETDAKEMAAAAKEAGVINMVNLTYRNVPAVMHAATMVANGDIGEVRHFEASYLQSWLTQPLWGDWRSESQWLWRLSQKHGSLGVLGDVGVHILDFATMVAGANPTDVSCRLTTFHKAEGDQIGEYPLDANDSFNMHLALTNGAAGVVHASRFASGHINDLRLRIFGTKGGLDVRFEGETSKLYACLEPDLQSANWQEVDTPEVKTNYRRFIEAIRSGVPGLPDFDRGAVLQTALDAAVASDEDGGKNTPVAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q6B8</accession>
    <name>A0A1M5Q6B8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">PufQ cytochrome subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2065</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Required for bacteriochlorophyll biosynthesis. Directly involved in the assembly of both the B875 and B800-850 pigment-protein complexes.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the PufQ family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09440.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900821.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH09440">
        <property type="protein sequence ID" value="SHH09440"/>
        <property type="gene ID" value="SAMN05444003_2065"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030494">
        <property type="term" value="P:bacteriochlorophyll biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015979">
        <property type="term" value="P:photosynthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008800">
        <property type="entry name" value="PufQ_cyt-su"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05398">
        <property type="entry name" value="PufQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0077">Bacteriochlorophyll biosynthesis</keyword>
    <keyword evidence="4" id="KW-0149">Chlorophyll biosynthesis</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0602">Photosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="22"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009920"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH09440.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="74" mass="8288" checksum="967BFD5908A95465" modified="2017-03-15" version="1">MTDFTTDTPIARERAAPPKREYYAYFGIIFLATLPLAILTWGLSAARQMSLPEKGPIAKAWSQARIITPHIFHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q8G1</accession>
    <name>A0A1M5Q8G1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2106</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH10220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH10220">
        <property type="protein sequence ID" value="SHH10220"/>
        <property type="gene ID" value="SAMN05444003_2106"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="179"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="181"/>
            <end position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH10220.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="234" mass="26916" checksum="7BA990729AD82EB7" modified="2017-03-15" version="1">MSHIKYTICRSGTYYYNRRLPKHAVVAYGRFIRCQLTKDPLEAEAYAMRLTEVLDSSWNDKAKMKAVDIQSLLESFKPRSALLSEMANEYLLLKPIDQTPPKVALATFLHLVGDRDVARYCRDDARVFVRNLSKNGNKNATIRRRINSLSAIFNYAFSELDLDKRNPFSKLMISGEEEDNSMTTVTRKEDRELTRNGPSSKSYVDRYKLIGIEVAHLKSQPIEILKNRLANTSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QHH4</accession>
    <name>A0A1M5QHH4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Cytosine-specific methyltransferase</fullName>
            <ecNumber evidence="8">2.1.1.37</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_2128</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>a 2'-deoxycytidine in DNA + S-adenosyl-L-methionine = a 5-methyl-2'-deoxycytidine in DNA + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:13681"/>
            <dbReference type="Rhea" id="RHEA-COMP:11369"/>
            <dbReference type="Rhea" id="RHEA-COMP:11370"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:85452"/>
            <dbReference type="ChEBI" id="CHEBI:85454"/>
            <dbReference type="EC" id="2.1.1.37"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="6 7">Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.37" evidence="8"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH13634.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900931.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2128"/>
    <dbReference type="EnsemblBacteria" id="SHH13634">
        <property type="protein sequence ID" value="SHH13634"/>
        <property type="gene ID" value="SAMN05444003_2128"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003886">
        <property type="term" value="F:DNA (cytosine-5-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009307">
        <property type="term" value="P:DNA restriction-modification system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018117">
        <property type="entry name" value="C5_DNA_meth_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001525">
        <property type="entry name" value="C5_MeTfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031303">
        <property type="entry name" value="C5_meth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00145">
        <property type="entry name" value="DNA_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00105">
        <property type="entry name" value="C5METTRFRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00675">
        <property type="entry name" value="dcm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00094">
        <property type="entry name" value="C5_MTASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00095">
        <property type="entry name" value="C5_MTASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51679">
        <property type="entry name" value="SAM_MT_C5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6 8" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0680">Restriction system</keyword>
    <keyword evidence="4 6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 6 8" id="KW-0808">Transferase</keyword>
    <feature type="active site" evidence="6">
        <location>
            <position position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000743"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH13634.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="408" mass="46240" checksum="C3ECB463C1269D8A" modified="2017-03-15" version="1">MRFIDLFAGCGGLSLGLSLSGWKGVFAIEKNEDAFKTLIHNFQKKKSISFSWPEWLPKEAMSTSDLIDRYRIDLIGLRGTIDMICGGPPCQGFSFAGRRKVDDPRNQLKNEYLEIVDLVRPKFLMFENVKGFTARFQNSSAPTHSEQVEKQLHDFDWGGYKTFSKVINASVFGVPQPRPRFILIAVRADLLQEGATVDDPFEAIESHARDFRDRKKLNGHEITVKEAISDLEVAFSGTIPSVDTKGFQQIVYNRSKGSTYQALMKAGVKKAASVNSLRLAKHRPETIQRFQEILETCPKGKSLPKAFREKYNIRKQCFTPLHPDELSKTITTLPDDLLHYSEPRILTVRECARLQSFPDWFEFLGKYTTGGARRKLECPRYTQVGNAVPPLMAEALGHIIFEMHESIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QQD7</accession>
    <name>A0A1M5QQD7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DNA-nicking endonuclease, Smr domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2235</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15803.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901101.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2235"/>
    <dbReference type="EnsemblBacteria" id="SHH15803">
        <property type="protein sequence ID" value="SHH15803"/>
        <property type="gene ID" value="SAMN05444003_2235"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1370.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002625">
        <property type="entry name" value="Smr_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036063">
        <property type="entry name" value="Smr_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01713">
        <property type="entry name" value="Smr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00463">
        <property type="entry name" value="SMR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160443">
        <property type="entry name" value="SSF160443"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50828">
        <property type="entry name" value="SMR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Smr" evidence="2">
        <location>
            <begin position="95"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50828"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH15803.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="188" mass="20995" checksum="9DFC0ACA87C3FC81" modified="2017-03-15" version="1">MKKPRHLSSDERALWDSVARQTVPMTPDKQAKVAEESPVRKPVKPAVPISPFRVGETASATATFGQQVDRKPKVVMDAGAFAKLKRGKLTPERRIDLHGMTLSQAHPALIRFIMEAHTDQKRLVLVITGKGDRKDPKGPFEVQRGVLRRQVPMWLSAPPLNAYILQSVPSHQKHGGDGALYVYLRRAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QTC0</accession>
    <name>A0A1M5QTC0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Putrescine-binding periplasmic protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2311</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Required for the activity of the bacterial periplasmic transport system of putrescine.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 4">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial solute-binding protein 1 family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the bacterial solute-binding protein PotD/PotF family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2311"/>
    <dbReference type="EnsemblBacteria" id="SHH17377">
        <property type="protein sequence ID" value="SHH17377"/>
        <property type="gene ID" value="SAMN05444003_2311"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019808">
        <property type="term" value="F:polyamine binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015846">
        <property type="term" value="P:polyamine transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006059">
        <property type="entry name" value="SBP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001188">
        <property type="entry name" value="Sperm_putr-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13416">
        <property type="entry name" value="SBP_bac_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF019574">
        <property type="entry name" value="Periplasmic_polyamine_BP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00909">
        <property type="entry name" value="SPERMDNBNDNG"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0574">Periplasm</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR019574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH17377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="355" mass="38642" checksum="12AB1AE8028D7F90" modified="2017-03-15" version="1">MSALALGLAATTAFAEEVRVYNWSDYIDEALLEKFEAETGIDLIYDVFDSNEVLETKMLAGSSGYDVVVPSGTFLQRQIAAGAFQPLDQGQLSNSGNLWDVIADRTAQYDPGNAYSINYMWGTTGLGVNVGKVQEILGEDAPVGSLALVFEPENMEKLAECGVHFLDAPSEIIPAALAYLGENPDSQDPDVIAKAEPLLMAVRPYVTKFHSSEYINALANGDICVAIGWSGDVLQARDRAWEAENGVEIAYNAPSEGALMWFDQMAIPADAPNPEAAHKFLNFIMDANNMADASNYVYYANGNLASQEFLIEDVIGDTAIYPDEATLENLYTTTPYGPRVQRTVTRLWTKIKSGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QUF3</accession>
    <name>A0A1M5QUF3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 4">GDP-mannose 4,6-dehydratase</fullName>
            <ecNumber evidence="3 4">4.2.1.47</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">GDP-D-mannose dehydratase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">gmd</name>
        <name evidence="6" type="ORF">SAMN05444003_2319</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6-deoxy-D-mannose.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>GDP-alpha-D-mannose = GDP-4-dehydro-alpha-D-rhamnose + H2O</text>
            <dbReference type="Rhea" id="RHEA:23820"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:57527"/>
            <dbReference type="ChEBI" id="CHEBI:57964"/>
            <dbReference type="EC" id="4.2.1.47"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 4">
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the NAD(P)-dependent epimerase/dehydratase family. GDP-mannose 4,6-dehydratase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.47" evidence="3 4"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17551.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901231.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2319"/>
    <dbReference type="EnsemblBacteria" id="SHH17551">
        <property type="protein sequence ID" value="SHH17551"/>
        <property type="gene ID" value="SAMN05444003_2319"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008446">
        <property type="term" value="F:GDP-mannose 4,6-dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070401">
        <property type="term" value="F:NADP+ binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019673">
        <property type="term" value="P:GDP-mannose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00955">
        <property type="entry name" value="GDP_Man_dehydratase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006368">
        <property type="entry name" value="GDP_Man_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016040">
        <property type="entry name" value="NAD(P)-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43715">
        <property type="entry name" value="PTHR43715"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16363">
        <property type="entry name" value="GDP_Man_Dehyd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01472">
        <property type="entry name" value="gmd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-0521">NADP</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD(P)-bd_dom" evidence="5">
        <location>
            <begin position="6"/>
            <end position="346"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00955"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF16363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH17551.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="373" mass="42387" checksum="18842B7B24F261F8" modified="2017-03-15" version="1">MSKRALITGITGQDGSFLTELLLEKGYEVHGIKRRASSFNTQRIDHVYEDPHNPSPRLKLHYGDLTDTLNLTRILREVEPDEVYNLGAQSHVAVSFEAPEYTADVDAIGTLRLLEAIRFLGFEERTRFYQASTSELYGLVQETPQTEKTPFYPRSPYAIAKLYAYWTVVNYREAYGMYACNGILFNHESPRRGETFVTRKITRGLANIAQGLEDCLYMGNIDALRDWGHAKDYVQMQWLMLQQEQPDDFVIASGKQHSVRDFITWSALELGIRLRFEGQGLDEVAIVDSVEGDDAPALKVGDAIVRIDQRYYRPAEVETLLGDPSKAKKELGWEPTISAEEMCKEMVAEDLKSAKRHALLKEHGLEMPVSIEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QX86</accession>
    <name>A0A1M5QX86_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">Glucose-1-phosphate thymidylyltransferase</fullName>
            <ecNumber evidence="4 5">2.7.7.24</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2377</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>alpha-D-glucose 1-phosphate + dTTP + H(+) = diphosphate + dTDP-alpha-D-glucose</text>
            <dbReference type="Rhea" id="RHEA:15225"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37568"/>
            <dbReference type="ChEBI" id="CHEBI:57477"/>
            <dbReference type="ChEBI" id="CHEBI:58601"/>
            <dbReference type="EC" id="2.7.7.24"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3 5">Belongs to the glucose-1-phosphate thymidylyltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.24" evidence="4 5"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18722.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901322.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2377"/>
    <dbReference type="EnsemblBacteria" id="SHH18722">
        <property type="protein sequence ID" value="SHH18722"/>
        <property type="gene ID" value="SAMN05444003_2377"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008879">
        <property type="term" value="F:glucose-1-phosphate thymidylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045226">
        <property type="term" value="P:extracellular polysaccharide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02538">
        <property type="entry name" value="G1P_TT_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005907">
        <property type="entry name" value="G1P_thy_trans_s"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005835">
        <property type="entry name" value="NTP_transferase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43532">
        <property type="entry name" value="PTHR43532"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00483">
        <property type="entry name" value="NTP_transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01207">
        <property type="entry name" value="rmlA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="NTP_transferase" evidence="6">
        <location>
            <begin position="5"/>
            <end position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001095"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010480"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH18722.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="289" mass="31800" checksum="F63855D1A1107288" modified="2017-03-15" version="1">MKDRKGIILAGGSGTRLYPITMAVSKQLLPIYDKPMIYYPISTLMLAGIREIAMITTPHDQDQFQKALGDGSQWGISLTWIVQESPDGLAQAYLLAEDFLDGAPSAMVLGDNLFFGTGLTDMLLGAAKSSENAVFGYQVRDPERYGVVGFAEDHSVESIIEKPENPASNYAVTGLYFLDETAPARAKQVAPSARGELEITTLLESYLKEGKLKVNRMGRGYAWLDTGTHASLLDAGNFARTLENRQGLQTGCLEEIAFEQGWITKEQLLKRAKLFAKNSYGEYLLRLAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QX87</accession>
    <name>A0A1M5QX87_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6">dTDP-4-dehydrorhamnose reductase</fullName>
            <ecNumber evidence="4 6">1.1.1.133</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_2378</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>dTDP-beta-L-rhamnose + NADP(+) = dTDP-4-dehydro-beta-L-rhamnose + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:21796"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57510"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:62830"/>
            <dbReference type="EC" id="1.1.1.133"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="6">Binds 1 Mg(2+) ion per monomer.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 6">Carbohydrate biosynthesis; dTDP-L-rhamnose biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 6">Belongs to the dTDP-4-dehydrorhamnose reductase family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.133" evidence="4 6"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18745.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2378"/>
    <dbReference type="EnsemblBacteria" id="SHH18745">
        <property type="protein sequence ID" value="SHH18745"/>
        <property type="gene ID" value="SAMN05444003_2378"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00124"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008831">
        <property type="term" value="F:dTDP-4-dehydrorhamnose reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019305">
        <property type="term" value="P:dTDP-rhamnose biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005913">
        <property type="entry name" value="dTDP_dehydrorham_reduct"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029903">
        <property type="entry name" value="RmlD-like-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10491">
        <property type="entry name" value="PTHR10491"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04321">
        <property type="entry name" value="RmlD_sub_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01214">
        <property type="entry name" value="rmlD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0521">NADP</keyword>
    <keyword evidence="6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RmlD_sub_bind" evidence="7">
        <location>
            <begin position="20"/>
            <end position="301"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000079"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010944"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00017099"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU364082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF04321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH18745.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="305" mass="32726" checksum="3E076190644615F6" modified="2017-03-15" version="1">MEGAAEPHWCWGTLGSQVVKIVVLGKSGQVATSLQSVQNDAIEVIALGRGELDLTNTADLFQPIAAHEPDAIINASAYTAVDQAETNQDAAFVLNKTAVKRLGEVASQLSIPIIHLSTDYVFNGSGIDAWTPDDLTDPLGTYGKSKLAGEMALAEVSSNYAILRTSWVFSATGSNFVKTMLRLGKDRDSLNVVSDQIGGPTSADDIAAASIQIAKALIANPDQKGIWHFSGLDDCNWADFATEIFRQAKIDCDVHAIPSSEYPTPAMRPLNSRLDCTTTEQDFGIKRPLWTDSLTAVLRDLGEVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QXT7</accession>
    <name>A0A1M5QXT7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sugar phosphate isomerase/epimerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2387</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18922.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901339.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2387"/>
    <dbReference type="EnsemblBacteria" id="SHH18922">
        <property type="protein sequence ID" value="SHH18922"/>
        <property type="gene ID" value="SAMN05444003_2387"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AP_endonuc_2" evidence="1">
        <location>
            <begin position="29"/>
            <end position="321"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH18922.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="351" mass="39112" checksum="227C4222D46DC5FC" modified="2017-03-15" version="1">MKTIKGPALFLAQFAGDEAPFNSWDAITKWAADCGYKGVQVPSWDGRLFGLDQAAVSKDYCDEWKGQAAANGIEVTELSTHLQGQLVAVHPAYDEAFDGFAAEAVQGNPKARQEWAVDQVKKALSASKNLGLTEMATFSGALAWPYVYPWPQRPAGLVEQAFDELAKRWVPILNHAEENGVDVCYEIHPGEDLHDGVTYEMFLERTGNHDRACMLYDPSHYVLQCLDYLDHIDIYKDRIRMFHVKDAEFDPTGRQGVYGGFQSWVDRAGRFRSLGDGQVDFKSIFAKMAANDFDGWAVVEWECALKHPEDGAREGAEFVKDHIIRVTEHAFDDFADGGADAATNARMMGID</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QYE8</accession>
    <name>A0A1M5QYE8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Photosynthetic reaction center H subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2400</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19164.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901357.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2400"/>
    <dbReference type="EnsemblBacteria" id="SHH19164">
        <property type="protein sequence ID" value="SHH19164"/>
        <property type="gene ID" value="SAMN05444003_2400"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030077">
        <property type="term" value="C:plasma membrane light-harvesting complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045156">
        <property type="term" value="F:electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019684">
        <property type="term" value="P:photosynthesis, light reaction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.50.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014747">
        <property type="entry name" value="Bac_photo_RC_H_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005652">
        <property type="entry name" value="Photo_RC_H"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015810">
        <property type="entry name" value="Photo_RC_H_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037097">
        <property type="entry name" value="Photo_RC_H_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027275">
        <property type="entry name" value="PRC-brl_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011033">
        <property type="entry name" value="PRC_barrel-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05239">
        <property type="entry name" value="PRC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03967">
        <property type="entry name" value="PRCH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50346">
        <property type="entry name" value="SSF50346"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01150">
        <property type="entry name" value="puhA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="domain" description="PRCH" evidence="3">
        <location>
            <begin position="5"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="domain" description="PRC" evidence="4">
        <location>
            <begin position="144"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="42"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="77"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF05239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH19164.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="251" mass="27365" checksum="18EEB94DA07F76FD" modified="2017-03-15" version="1">MVGETFFGDFDLASAAIWLFWIFFAGLVYYLQTENMREGYPLTDDDGSASAGPGIFPTPKDKTFHLRDGRGEVTVPSGQNPDRSDLALAQSSESAGSPYVPTGDPMMDGVGPASWAPRRDVPELDAHGHVKIRPMSMLEDFQVSAGRDPRGLAVVGGDTEVVGRVIDMWVDVPEQMVRYLTVDLNPEGSGKTRLIPMNLAKISSDRVTVRSLHAHNWEGVPTTKAADQVTLLEEEKITAYYAGGTMYANPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R122</accession>
    <name>A0A1M5R122_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Tripartite tricarboxylate transporter TctB family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2446</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH20075.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901419.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2446"/>
    <dbReference type="EnsemblBacteria" id="SHH20075">
        <property type="protein sequence ID" value="SHH20075"/>
        <property type="gene ID" value="SAMN05444003_2446"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009936">
        <property type="entry name" value="DUF1468"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07331">
        <property type="entry name" value="TctB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="43"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="82"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="120"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH20075.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="167" mass="18798" checksum="D63AB59F1F77FEF9" modified="2017-03-15" version="1">MRQGEISLAGLLALFSLYLMWKSTELPIGYIRGQGPGGGFWPFWLSFGMLLSCGAIAWNWWRGKSPASQSDDPIMDAFGWRTIIWVGGGLVAFVALIPIVSMYGAIALFLIYYLRFLGRHSWLLTLILATALPIGLFFFFEAAMLISMPQGMPFTQPFFDVMYDIIY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R205</accession>
    <name>A0A1M5R205_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2463</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH20445.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901447.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH20445">
        <property type="protein sequence ID" value="SHH20445"/>
        <property type="gene ID" value="SAMN05444003_2463"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="3"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH20445.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="281" mass="31377" checksum="453589C821B6800C" modified="2017-03-15" version="1">MVPYWDDLKYLLALEQSGSLVAAAKILNTNPTTVSRHVKRLSETYQRTLVSRTSNGEWSMTEHGKAFAKTARLCQNEIARLGGPDEEMEQQTIRVSTVDFVAEYFLTPKLSYLPVNPEKTALSLEAADKNVSLAYGEADLAIRLGRPKQGRLIISKIGTIDMGLFASERVGGTAWIGLTSDLDWVPEMQAGYEIFGEPPAIRLSSFNCIRRVAVERGLPCVGPDSVMRNWNGLERVNTGKPQPFREVWSVIHEDRRQDELLLKTKEWARTCFTSEADVAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RIV8</accession>
    <name>A0A1M5RIV8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Glyceraldehyde 3-phosphate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2593</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="5">Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25733.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901724.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2593"/>
    <dbReference type="EnsemblBacteria" id="SHH25733">
        <property type="protein sequence ID" value="SHH25733"/>
        <property type="gene ID" value="SAMN05444003_2593"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020831">
        <property type="entry name" value="GlycerAld/Erythrose_P_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020830">
        <property type="entry name" value="GlycerAld_3-P_DH_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020829">
        <property type="entry name" value="GlycerAld_3-P_DH_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020828">
        <property type="entry name" value="GlycerAld_3-P_DH_NAD(P)-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43148">
        <property type="entry name" value="PTHR43148"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02800">
        <property type="entry name" value="Gp_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00044">
        <property type="entry name" value="Gp_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000149">
        <property type="entry name" value="GAP_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00078">
        <property type="entry name" value="G3PDHDRGNASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00846">
        <property type="entry name" value="Gp_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00071">
        <property type="entry name" value="GAPDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0520">NAD</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Gp_dh_N" evidence="6">
        <location>
            <begin position="2"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="2">
        <location>
            <position position="150"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="11"/>
            <end position="12"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="36"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="120"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="309"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="site" description="Activates thiol group during catalysis" evidence="4">
        <location>
            <position position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000149-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000149-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000149-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000397"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH25733.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="327" mass="34677" checksum="44F5B437B19E9F0A" modified="2017-03-15" version="1">MTRVAINGFGRIGRTVLRQLLTTRKDAGIEVALINDIATAELCAYLFAHDSVFGVYPEPVTAEGDALVIGDARIAFTNDPNLSQTDLNGIDIILECAGHAKTRDVAERGLKAGAAQVLISGPTDAADITVVMGANDNALGDAQIVSNASCTTNALAPIVNILDDSLGLEAAHMTTIHCYTSSQPMIDAPRGDMARSRAGAMSMVPTNTSATSRVLEVLPELKGRLTGAAVRVPTASVSAVDLTATLNADVSIDQLNDLIRKADPNLIGTTDLPLVSTDLRARPESLIVATPETIVTTPRHVRIFGWYDNEWGFSARMIDMALRMVAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RJ20</accession>
    <name>A0A1M5RJ20_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">3-isopropylmalate dehydratase small subunit</fullName>
            <ecNumber evidence="10">4.2.1.33</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Alpha-IPM isomerase</fullName>
            <shortName evidence="10">IPMI</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">Isopropylmalate isomerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">leuD</name>
        <name evidence="12" type="ORF">SAMN05444003_2618</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 10">Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>(2R,3S)-3-isopropylmalate = (2S)-2-isopropylmalate</text>
            <dbReference type="Rhea" id="RHEA:32287"/>
            <dbReference type="ChEBI" id="CHEBI:1178"/>
            <dbReference type="ChEBI" id="CHEBI:35121"/>
            <dbReference type="EC" id="4.2.1.33"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 10">Amino-acid biosynthesis; L-leucine biosynthesis; L-leucine from 3-methyl-2-oxobutanoate: step 2/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5 10">Heterodimer of LeuC and LeuD.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 10">Belongs to the LeuD family. LeuD type 1 subfamily.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.33" evidence="10"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901765.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2618"/>
    <dbReference type="EnsemblBacteria" id="SHH26244">
        <property type="protein sequence ID" value="SHH26244"/>
        <property type="gene ID" value="SAMN05444003_2618"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00048">
        <property type="reaction ID" value="UER00071"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009316">
        <property type="term" value="C:3-isopropylmalate dehydratase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003861">
        <property type="term" value="F:3-isopropylmalate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009098">
        <property type="term" value="P:leucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01577">
        <property type="entry name" value="IPMI_Swivel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.19.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01031">
        <property type="entry name" value="LeuD_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004431">
        <property type="entry name" value="3-IsopropMal_deHydase_ssu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015928">
        <property type="entry name" value="Aconitase/3IPM_dehydase_swvl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000573">
        <property type="entry name" value="AconitaseA/IPMdHydase_ssu_swvl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033940">
        <property type="entry name" value="IPMI_Swivel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00694">
        <property type="entry name" value="Aconitase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00171">
        <property type="entry name" value="leuD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 10" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9 10" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="6 10" id="KW-0432">Leucine biosynthesis</keyword>
    <keyword evidence="8 10" id="KW-0456">Lyase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aconitase_C" evidence="11">
        <location>
            <begin position="1"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011271"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022430"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHH26244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="201" mass="22198" checksum="5BB745A31711834A" modified="2017-03-15" version="1">MEKFEKLSGIAAPMPLVNIDTDMIIPKQFLKTIKRSGLGVNLFDEMRYDREGNEIADFVLNKQQYREAEILVAGDNFGCGSSREHAPWAIKDFGIRCVISTSFADIFYNNCFKNGILPIVLPQEQVDVLMADADKGANARIEVDLEAQTVTASDGTAFSFEVDSFKKHCLLNGFDDIGLTMEKSGSIASFEAEAAAARPWV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RNL9</accession>
    <name>A0A1M5RNL9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5 7">30S ribosomal protein S12</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpsL</name>
        <name evidence="9" type="ORF">SAMN05444003_2684</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 5 7">Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.</text>
    </comment>
    <comment type="function">
        <text evidence="1 5 7">With S4 and S5 plays an important role in translational accuracy.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5 7">Part of the 30S ribosomal subunit. Contacts proteins S8 and S17. May interact with IF1 in the 30S initiation complex.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 5 6">Belongs to the universal ribosomal protein uS12 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH27769.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901927.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2684"/>
    <dbReference type="EnsemblBacteria" id="SHH27769">
        <property type="protein sequence ID" value="SHH27769"/>
        <property type="gene ID" value="SAMN05444003_2684"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015935">
        <property type="term" value="C:small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03368">
        <property type="entry name" value="Ribosomal_S12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00403_B">
        <property type="entry name" value="Ribosomal_S12_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006032">
        <property type="entry name" value="Ribosomal_S12/S23"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005679">
        <property type="entry name" value="Ribosomal_S12_bac"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11652">
        <property type="entry name" value="PTHR11652"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00164">
        <property type="entry name" value="Ribosom_S12_S23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002133">
        <property type="entry name" value="Ribosomal_S12/S23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01034">
        <property type="entry name" value="RIBOSOMALS12"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00981">
        <property type="entry name" value="rpsL_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00055">
        <property type="entry name" value="RIBOSOMAL_S12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="5 6 9" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5 7" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="5 7" id="KW-0820">tRNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003022"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005657"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00015690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00024962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00403"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003622"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003623"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH27769.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="123" mass="14055" checksum="A60F224A3E4FC6BA" modified="2017-03-15" version="1">MPTIQQLIRKPRQPKVTRSKSLHMEGCPQKRGVCTRVYTTTPKKPNSAMRKVAKVRLTNGFEVISYIPGESHNLQEHSVVLIRGGRVKDLPGVRYHILRGVLDTQGVKDRKQRRSKYGAKRPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RVZ1</accession>
    <name>A0A1M5RVZ1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Large-conductance mechanosensitive channel</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">mscL</name>
        <name evidence="12" type="ORF">SAMN05444003_2728</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Homopentamer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cell inner membrane</location>
            <topology evidence="10">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 10">Belongs to the MscL family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30492.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901985.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2728"/>
    <dbReference type="EnsemblBacteria" id="SHH30492">
        <property type="protein sequence ID" value="SHH30492"/>
        <property type="gene ID" value="SAMN05444003_2728"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008381">
        <property type="term" value="F:mechanosensitive ion channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1200.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00115">
        <property type="entry name" value="MscL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019823">
        <property type="entry name" value="Mechanosensitive_channel_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001185">
        <property type="entry name" value="MS_channel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037673">
        <property type="entry name" value="MSC/AndL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036019">
        <property type="entry name" value="MscL_channel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30266">
        <property type="entry name" value="PTHR30266"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01741">
        <property type="entry name" value="MscL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01264">
        <property type="entry name" value="MECHCHANNEL"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81330">
        <property type="entry name" value="SSF81330"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00220">
        <property type="entry name" value="mscL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01327">
        <property type="entry name" value="MSCL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="4 10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9 10" id="KW-0407">Ion channel</keyword>
    <keyword evidence="7 10" id="KW-0406">Ion transport</keyword>
    <keyword evidence="8 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 10" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="17"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="79"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="107"/>
            <end position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00115"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHH30492.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="136" mass="14489" checksum="C732EBA351CBEC9E" modified="2017-03-15" version="1">MIQEFKDFIAKGNVMDMAVGIIIGAAFTAIVGSLVADLVNPIISLFMGGVDFSGLFVVLGDGEYASITEAEEAGAAVFAYGRFIMAVINFLIIAFVVFMLVRAVNKTKKEEEPAPEAPKGPTQEELLSDILAALKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RWQ8</accession>
    <name>A0A1M5RWQ8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2740</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30772.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902006.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2740"/>
    <dbReference type="EnsemblBacteria" id="SHH30772">
        <property type="protein sequence ID" value="SHH30772"/>
        <property type="gene ID" value="SAMN05444003_2740"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016878">
        <property type="entry name" value="UCP028288"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF028288">
        <property type="entry name" value="UCP028288"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH30772.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="157" mass="17077" checksum="29AE0847F2327CEA" modified="2017-03-15" version="1">MSITKTQITQAHQTWGDALVAISKSFEKGGIDDARRVADDFIDAAYGYADGDVLFKPTMASGNQTFRLTKEGALSYFVGHDDNFPLDGGFGLKGWRSVRFDTASTFVDGEIALWMGNVILTDKDGGETAVDKSFGYKSDESGALRIVLHHSSLPYLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RYF1</accession>
    <name>A0A1M5RYF1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP synthase protein I</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2760</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial AtpI family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31265.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2760"/>
    <dbReference type="EnsemblBacteria" id="SHH31265">
        <property type="protein sequence ID" value="SHH31265"/>
        <property type="gene ID" value="SAMN05444003_2760"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045263">
        <property type="term" value="C:proton-transporting ATP synthase complex, coupling factor F(o)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006811">
        <property type="term" value="P:ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016989">
        <property type="entry name" value="Atp1_alphaprobac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032820">
        <property type="entry name" value="ATPase_put"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09527">
        <property type="entry name" value="ATPase_gene1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF032126">
        <property type="entry name" value="F0F1_ATP_synthase_subunit_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="1" id="KW-0406">Ion transport</keyword>
    <keyword evidence="1 3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="38"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="66"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR032126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH31265.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="110" mass="12345" checksum="327390E42D2F4C71" modified="2017-03-15" version="1">MDEADKRRLEELEARIEAAKTPEETKHHSEEHYSQAQLAWRMVIELVAGLMIGFGIGYGLDILLGTTPIFLVLFILFGLAAGVLTMMRSVKEVQEKRTRAAEEEGQENGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S0Z9</accession>
    <name>A0A1M5S0Z9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Two-component system, OmpR family, response regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2807</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32322.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2807"/>
    <dbReference type="EnsemblBacteria" id="SHH32322">
        <property type="protein sequence ID" value="SHH32322"/>
        <property type="gene ID" value="SAMN05444003_2807"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="5"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="5">
        <location>
            <begin position="128"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="3">
        <location>
            <begin position="128"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH32322.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="230" mass="25467" checksum="5E2EE7D50DC6F536" modified="2017-03-15" version="1">MMDRHILVADDDARIRDVLRIALGQAGFEVDEVADGKEALRAAQRTQPDLIVLDIGMPEMDGLEVCRELRKTSQVPILFLTAQGDEIDRVVGLEMGADDYVSKPFSPREVIARIRAILKRSGVEAEEATVLQRGVLRIDPERHLCEVGDRPVTLTSREMELVIQLMKRPNHVVARPQLVDAIYGTNVHVSDRTMDSHLRNVRAKFAAVGCKDAIETVHGVGVRMGPCSAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S3I1</accession>
    <name>A0A1M5S3I1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2835</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33016.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902146.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH33016">
        <property type="protein sequence ID" value="SHH33016"/>
        <property type="gene ID" value="SAMN05444003_2835"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012816089" evidence="1">
        <location>
            <begin position="21"/>
            <end position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH33016.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="195" mass="19651" checksum="61AED18EFEF6BE6C" modified="2017-03-15" version="1">MGARTIGLFLALGFATGCGGGAVAPTQAPSFSAQVDSFDAEFSRARGQDFSTSGSVSSASGSYSGTTVVRVLDGGAPSTFLGDASLTVDIAGGTVSGSLRGFTRRLSGSNEEHLNGRLTVRGQSIGVSQDSEFISTVSGTLTGDSTDFRLGSGTLFGDLLQNPTSSLVGQGTFTNSTLDGRNGLTSTVNVLADKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S473</accession>
    <name>A0A1M5S473_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2838</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33088.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH33088">
        <property type="protein sequence ID" value="SHH33088"/>
        <property type="gene ID" value="SAMN05444003_2838"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="52"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="76"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH33088.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="236" mass="26372" checksum="23141746E1ACD4E5" modified="2017-03-15" version="1">MSVLILSPETVWNQGILKFSTAPRKILQRGMVFPRKEASARLRFRIILESQFVRYFLTLVPFIAAGITWPELALPLGSAPVLMLIAVGFVELRILRLPAAKRKDVVGEAESAHALDTLNFRGRKILSSLAAKRGIQTGNLFLVVEQSDLVRLNPLTFVSLQKDEGKSRLVALNKEEREMIRTGLFDPDFTEQDLALANQREATFLRSVNFEARGVSAHARLAAFLDNAKDTMEPAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S599</accession>
    <name>A0A1M5S599_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Carbon monoxide dehydrogenase, medium subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2840</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33143.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902154.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2840"/>
    <dbReference type="EnsemblBacteria" id="SHH33143">
        <property type="protein sequence ID" value="SHH33143"/>
        <property type="gene ID" value="SAMN05444003_2840"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.43.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005107">
        <property type="entry name" value="CO_DH_flav_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036683">
        <property type="entry name" value="CO_DH_flav_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016166">
        <property type="entry name" value="FAD-bd_PCMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016167">
        <property type="entry name" value="FAD-bd_PCMH_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002346">
        <property type="entry name" value="Mopterin_DH_FAD-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03450">
        <property type="entry name" value="CO_deh_flav_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00941">
        <property type="entry name" value="FAD_binding_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01092">
        <property type="entry name" value="CO_deh_flav_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55447">
        <property type="entry name" value="SSF55447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51387">
        <property type="entry name" value="FAD_PCMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0274">FAD</keyword>
    <keyword evidence="1" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding PCMH-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH33143.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="284" mass="30061" checksum="B9FE961D4B8C00BA" modified="2017-03-15" version="1">MIPAAFEYYRPKDMAGVLSILEEHGDDARVMAGGHSLIPMMKLRMADVPHLIDLQDVGGLSDIEISNDTISIGAMVTQHAIIDHDGLAEAAPILREASLQIADPQVRYMGTVGGNVANGDPGNDMPGLMQCLDATFTVVGADGERRIPAREFYEAAYMTARDDEEVLTSVTIPRPSGGYAYEKQKRKIGDYATAAAAVQIVKEGGSCASAAIAMTNLSDTPIYSQSAAAALVGSSVDDAAISAAIDAMLGDIDPTEDNRGPVAFKKHVAGVILRRAIERAWSRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S6Z3</accession>
    <name>A0A1M5S6Z3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">TRAP-type C4-dicarboxylate transport system, small permease component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_2878</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH34058.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902214.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2878"/>
    <dbReference type="EnsemblBacteria" id="SHH34058">
        <property type="protein sequence ID" value="SHH34058"/>
        <property type="gene ID" value="SAMN05444003_2878"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007387">
        <property type="entry name" value="TRAP_DctQ"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35011">
        <property type="entry name" value="PTHR35011"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04290">
        <property type="entry name" value="DctQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="14"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="47"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="85"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="127"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH34058.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="170" mass="19900" checksum="1B87989B08150F30" modified="2017-03-15" version="1">MEILRKIDQNAERWLLLLFYVMLVITMAIEVLRREIFAYSSIWGEEIVRYSFIYLAWIGAAAAVKERAHIRIDVIMHYIPPTPKTLLYIFGDLVMLVVAVIALYWSYEAVHVSYKFGSVTDGLRISKVWFLMAVPSGFFLLIWRLLQSLRRDFHSLRTGEPVYEGDTLFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SFU0</accession>
    <name>A0A1M5SFU0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2946</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37386.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902361.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2946"/>
    <dbReference type="EnsemblBacteria" id="SHH37386">
        <property type="protein sequence ID" value="SHH37386"/>
        <property type="gene ID" value="SAMN05444003_2946"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH37386.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="151" mass="16826" checksum="14E3FF84712AB65E" modified="2017-03-15" version="1">MSLHGRYLKKHTEALVKDVGIENACELTGKSKATLGRYYSDNDEHADRFMPVDAVAALEAKSSYPHVTSALAELNGIMLSYDDKKPNKEGGINSDVVALSQRFAMLMGEYNQSIEDGIISVNEAKRLLKETTELQKVLIDMKLHLEHETTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SJU5</accession>
    <name>A0A1M5SJU5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized domain 1-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3014</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902459.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3014"/>
    <dbReference type="EnsemblBacteria" id="SHH38867">
        <property type="protein sequence ID" value="SHH38867"/>
        <property type="gene ID" value="SAMN05444003_3014"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003736">
        <property type="entry name" value="PAAI_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006683">
        <property type="entry name" value="Thioestr_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03061">
        <property type="entry name" value="4HBT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00369">
        <property type="entry name" value="unchar_dom_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4HBT" evidence="1">
        <location>
            <begin position="54"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH38867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="144" mass="14825" checksum="CD86C558D8C95EF5" modified="2017-03-15" version="1">MSDETDRKTLIAKQFIGALPHAKELGMTIVDVGEGTATITMPYDEKLIGDPETGVIHGGAVSALMDTCCGAAVMAHPAALGGTATIDLRIDYMRPATPAQTISTTATCYHVTRSVAFVRAVAVDSDADRPVATATGAFTVEGAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SK30</accession>
    <name>A0A1M5SK30_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Fatty-acyl-CoA synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3003</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38608.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902444.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3003"/>
    <dbReference type="EnsemblBacteria" id="SHH38608">
        <property type="protein sequence ID" value="SHH38608"/>
        <property type="gene ID" value="SAMN05444003_3003"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="30"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="454"/>
            <end position="528"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH38608.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="541" mass="59188" checksum="D175BB0D6D52E120" modified="2017-03-15" version="1">MGWMSDETGLEKCTANYAPLTPLSHLQRANIVYPERTALIYGDHQLTYRQYHARVSRLASALTKIGVKSGDVVATILPNTPAQSEAAFGVPACGAILNTINTRLDVDTIAYILDHGEAKVVLVDSQFLPALMQAVDLMEGQPPGIVEVPDPIAGVAGIGKQIDYEGFITTGDPDFEWIMPEDEWESLALNYTSGTTGRPKGVVYHHRGAYLMTMGTPISWRMTLFPTLLQIVPLFHCNGWNHTWMMPVMGGTVVCCRDITAKAIYDAIADHGVTHFGGAPIVLNLIVNATEEERRPFDRTIEVFTAGAPPAPATLEAIGKLGFNITQVYGLTETYGHVTECVWIDEWDDLPAEDQAAIKARQGVAYPQMEHITVVDDQLQQVTMDSGTQGEIVMRGNSVMKGYFKNPEATAKSFAGGYFHSEDLAIQHPDGYIQISDRAKDIIISGGENISSVEVEGALMHHPAVNLCAVVAKPDEKWGEVPCAFIELKDGASADEAEMIAFTRERLAGFKCPKKVVFQELPKTSTGKIQKFELRALAKTY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SQU3</accession>
    <name>A0A1M5SQU3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Predicted ester cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3052</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH40944.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902577.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3052"/>
    <dbReference type="EnsemblBacteria" id="SHH40944">
        <property type="protein sequence ID" value="SHH40944"/>
        <property type="gene ID" value="SAMN05444003_3052"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030638">
        <property type="term" value="P:polyketide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009959">
        <property type="entry name" value="Cyclase_SnoaL-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38436">
        <property type="entry name" value="PTHR38436"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07366">
        <property type="entry name" value="SnoaL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH40944.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="174" mass="19610" checksum="B14F0B1BB26D0BEE" modified="2017-03-15" version="1">MMGSRPEQAVLSRDTDMSKTEATRAVIEGMVDGLNDHRIADIGEFFSETFSWMGNTGCGTKHGLREFQDNWQKPFQAAFSEKVCIDEARLYMGEWAAAFGRQEATHSGTFMGVAPTGKRINIRYMDFWKVEDGKITDNWVMVDFPHVLSQLGVDVFNGEGWEAFDRGEKTPPTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SRL2</accession>
    <name>A0A1M5SRL2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3063</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902595.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3063"/>
    <dbReference type="EnsemblBacteria" id="SHH41136">
        <property type="protein sequence ID" value="SHH41136"/>
        <property type="gene ID" value="SAMN05444003_3063"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008610">
        <property type="term" value="P:lipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006694">
        <property type="entry name" value="Fatty_acid_hydroxylase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04116">
        <property type="entry name" value="FA_hydroxylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="69"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="109"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="200"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="domain" description="Fatty acid hydroxylase" evidence="2">
        <location>
            <begin position="123"/>
            <end position="271"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH41136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="329" mass="37682" checksum="EA416A7483FBCF4D" modified="2017-03-15" version="1">MELTEYISSVFGDFINPKKRIFLGYLLLSLLIALLWLVTVKRTNLTNALARIFDRKILFSSSSKADYKLFVFNQLITLLISPMLITQLTIGTAIYFFLHKQSLIAPSEFSSLSTSMIIGLFSVSMFVIDDFTKYLVHRWMHHWPVLWAIHKVHHSAETLTPITVYRVHPLEGVLYALRSAVAQGVAISIFVFAFGNAVDLYTILGVNVLVFVFHVTGSNLRHSHIEIRYWPWLERFLISPAQHQLHHSIAEKHYDKNFGAALAIWDWMFGSLHLSEKDEQLSFGVIGEEDAASSIGALYWRPFRDIWRLFSRRAQQAKDLVGRAVGAKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5STY0</accession>
    <name>A0A1M5STY0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Mannose-6-phosphate isomerase, cupin superfamily</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3079</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41443.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3079"/>
    <dbReference type="EnsemblBacteria" id="SHH41443">
        <property type="protein sequence ID" value="SHH41443"/>
        <property type="gene ID" value="SAMN05444003_3079"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005976">
        <property type="term" value="P:polysaccharide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001538">
        <property type="entry name" value="Man6P_isomerase-2_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01050">
        <property type="entry name" value="MannoseP_isomer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MannoseP_isomer" evidence="1">
        <location>
            <begin position="32"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH41443.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="145" mass="16672" checksum="5A1021C5327CE02A" modified="2017-03-15" version="1">MNKSVKITSPVEVLDHANFSHSVDKEVGVSTNVERFHRPWGFYETLMLGKRFQVKRIVVWPGRKLSLQCHLHRAETWVVVAGCAKVTIDVETKLLSENDFVRIPLGEVHRMENPGKTPMHLIEVQSGVYLGEDDIIRYEDDYGRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SVA9</accession>
    <name>A0A1M5SVA9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">tRNA-cytidine(32) 2-sulfurtransferase</fullName>
            <ecNumber evidence="6">2.8.1.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Two-thiocytidine biosynthesis protein A</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">tRNA 2-thiocytidine biosynthesis protein TtcA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">ttcA</name>
        <name evidence="8" type="ORF">SAMN05444003_3134</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>AH2 + ATP + cytidine(32) in tRNA + S-sulfanyl-L-cysteinyl-[cysteine desulfurase] = 2-thiocytidine(32) in tRNA + A + AMP + diphosphate + H(+) + L-cysteinyl-[cysteine desulfurase]</text>
            <dbReference type="Rhea" id="RHEA:57048"/>
            <dbReference type="Rhea" id="RHEA-COMP:10288"/>
            <dbReference type="Rhea" id="RHEA-COMP:12157"/>
            <dbReference type="Rhea" id="RHEA-COMP:12158"/>
            <dbReference type="Rhea" id="RHEA-COMP:14821"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61963"/>
            <dbReference type="ChEBI" id="CHEBI:82748"/>
            <dbReference type="ChEBI" id="CHEBI:141453"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="6">Binds 1 [4Fe-4S] cluster per subunit. The cluster is chelated by three Cys residues, the fourth Fe has a free coordination site that may bind a sulfur atom transferred from the persulfide of IscS.</text>
    </comment>
    <comment type="pathway">
        <text evidence="6">tRNA modification.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="6">The thiolation reaction likely consists of two steps: a first activation step by ATP to form an adenylated intermediate of the target base of tRNA, and a second nucleophilic substitution step of the sulfur (S) atom supplied by the hydrosulfide attached to the Fe-S cluster.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the TtcA family.</text>
    </comment>
    <dbReference type="EC" id="2.8.1.-" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42390.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902696.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3134"/>
    <dbReference type="EnsemblBacteria" id="SHH42390">
        <property type="protein sequence ID" value="SHH42390"/>
        <property type="gene ID" value="SAMN05444003_3134"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00705"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016783">
        <property type="term" value="F:sulfurtransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034227">
        <property type="term" value="P:tRNA thio-modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01850">
        <property type="entry name" value="TtcA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011063">
        <property type="entry name" value="TilS/TtcA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012089">
        <property type="entry name" value="tRNA_Cyd_32_2_STrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035107">
        <property type="entry name" value="tRNA_thiolation_TtcA_Ctu1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01171">
        <property type="entry name" value="ATP_bind_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004976">
        <property type="entry name" value="ATPase_YdaO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 6" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 6" id="KW-0408">Iron</keyword>
    <keyword evidence="5 6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 6" id="KW-0808">Transferase</keyword>
    <keyword evidence="3 6" id="KW-0819">tRNA processing</keyword>
    <keyword evidence="6" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="ATP_bind_3" evidence="7">
        <location>
            <begin position="48"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="PP-loop motif" evidence="6">
        <location>
            <begin position="53"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="128"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="131"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="219"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH42390.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="281" mass="32251" checksum="4FF834207D1E12BE" modified="2017-03-15" version="1">MLDDNTDIHPLFHGAPTTTEFKKLRKRIVRYTREAIEQYGMIERDARWLVCLSGGKDSYTLLAVLHELKWRGLLPVDILACNLDQGQPNFPATVLPEFLEKMQVPHRIEYQDTYSIVVDKVPQGRTYCAMCSRLRRGNLYRIAREEGCSAVVLGHHRDDILETFFMNLFHGGRLATMPPKLVNEEGDLYVYRPLAHVAEEDCEKFARAMNYPIIPCDLCGSQDGLQRQQVKQILDGWEKNSPGRRQVMFRSLMNARPSHLLDPKLFDFAGLELSGKNPEST</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SVN9</accession>
    <name>A0A1M5SVN9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3143</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42557.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902711.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH42557">
        <property type="protein sequence ID" value="SHH42557"/>
        <property type="gene ID" value="SAMN05444003_3143"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH42557.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="173" mass="18893" checksum="273E0341F67CA316" modified="2017-03-15" version="1">MGADVLVVAPKRDQLHFSGSILKLLKTVSEAENNSLGFQHDVLILLASAQFVEGEPIPSQLTDFNDKGLSNAISSLVVTDPLCNILDVDTEDGRSVLTVLANAEDTDPFNVELCYLQGISKTMGNDIQQDNDLGIGKALIDIFSEFQYPLQGISHKKSRARRPGFPLILRPDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SVQ7</accession>
    <name>A0A1M5SVQ7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3142</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42540.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902709.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH42540">
        <property type="protein sequence ID" value="SHH42540"/>
        <property type="gene ID" value="SAMN05444003_3142"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="63"/>
            <end position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH42540.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="93" mass="10672" checksum="46838DAC1006CE03" modified="2017-03-15" version="1">MAEKTWNSVHDALRFSIFGFVVSALLSIVFLTLSDLRRAELIELGLSTMEQIDDPKLATFLRYANWSMTAASLFFIWITYFGVRHLVRKARVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SVT2</accession>
    <name>A0A1M5SVT2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Pseudouridine synthase</fullName>
            <ecNumber evidence="3">5.4.99.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_3149</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Responsible for synthesis of pseudouridine from uracil.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>a uridine in RNA = a pseudouridine in RNA</text>
            <dbReference type="Rhea" id="RHEA:48348"/>
            <dbReference type="Rhea" id="RHEA-COMP:12068"/>
            <dbReference type="Rhea" id="RHEA-COMP:12069"/>
            <dbReference type="ChEBI" id="CHEBI:65314"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the pseudouridine synthase RluA family.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.-" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42652.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902721.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3149"/>
    <dbReference type="EnsemblBacteria" id="SHH42652">
        <property type="protein sequence ID" value="SHH42652"/>
        <property type="gene ID" value="SAMN05444003_3149"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0120159">
        <property type="term" value="F:rRNA pseudouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000455">
        <property type="term" value="P:enzyme-directed rRNA pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd02869">
        <property type="entry name" value="PseudoU_synth_RluA_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00165">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020103">
        <property type="entry name" value="PsdUridine_synth_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006225">
        <property type="entry name" value="PsdUridine_synth_RluC/D"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006224">
        <property type="entry name" value="PsdUridine_synth_RluC/D_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006145">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002942">
        <property type="entry name" value="S4_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036986">
        <property type="entry name" value="S4_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00849">
        <property type="entry name" value="PseudoU_synth_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01479">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00363">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55120">
        <property type="entry name" value="SSF55120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00005">
        <property type="entry name" value="rluA_subfam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01129">
        <property type="entry name" value="PSI_RLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="S4" evidence="4">
        <location>
            <begin position="16"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010876"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR606225-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU362028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH42652.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="350" mass="38782" checksum="8D0E34AB29F19E77" modified="2017-03-15" version="1">MSGVQTRTIGPDDGDQRLDRYMRRLFPHLTQGRIEKMCRKGELRVDGGRVKSNTRLEVGQVVRIPPLPSEEEVEAARQLQKSGVSKADAKLIQSCVIYRDDHIIALNKPPGIATQGGSKTTRHIDGMAEALTFGYDEKPRLVHRLDKDTSGVLLLARTRMMAKKLTENLKHRETRKIYWAAVAGVPNPRAGTIKYGLVKAPGHGRGGENEKMRCVHPRDVPHVEGAKRATSDYAVMTTLANRGSWVALVPITGRTHQLRAHMAEIGHPIIGDGKYGGSHQENLGDGWGAGMGSEIGRKMHLHARTLIIEHPETGAELHLTAPLPEHMQHTWDFLGWDVTHAPVDPFNMPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SWK3</accession>
    <name>A0A1M5SWK3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">50S ribosomal protein L15</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rplO</name>
        <name evidence="8" type="ORF">SAMN05444003_3162</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Binds to the 23S rRNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the universal ribosomal protein uL15 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902741.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3162"/>
    <dbReference type="EnsemblBacteria" id="SHH42879">
        <property type="protein sequence ID" value="SHH42879"/>
        <property type="gene ID" value="SAMN05444003_3162"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01341">
        <property type="entry name" value="Ribosomal_L15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036227">
        <property type="entry name" value="L18e/L15P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030878">
        <property type="entry name" value="Ribosomal_L15"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005749">
        <property type="entry name" value="Ribosomal_L15_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021131">
        <property type="entry name" value="Ribosomal_L18e/L15P"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12934">
        <property type="entry name" value="PTHR12934"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00828">
        <property type="entry name" value="Ribosomal_L27A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52080">
        <property type="entry name" value="SSF52080"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01071">
        <property type="entry name" value="rplO_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 8" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="4" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="Ribosomal_L18e/L15P" evidence="7">
        <location>
            <begin position="28"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01341"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00828"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH42879.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="157" mass="16504" checksum="AF71591B3A7902D2" modified="2017-03-15" version="1">MKLNELRDNPGAARSKKRVGRGPGSGVGKTAGRGIKGQKSRSGVAIKGYEGGQMPLYQRLPKRGFNKPNRKSFAVVNLGLIQKFIDEKKIDAKKDITEDALIESGLVRRKKDGIRVLAKGNFSAKANITVTGASKGAIAAVEKAGGSLTVTTAAAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SY52</accession>
    <name>A0A1M5SY52_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 8">30S ribosomal protein S3</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">rpsC</name>
        <name evidence="13" type="ORF">SAMN05444003_3188</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7 8">Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Part of the 30S ribosomal subunit. Forms a tight complex with proteins S10 and S14.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 8 10">Belongs to the universal ribosomal protein uS3 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH43431.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902783.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3188"/>
    <dbReference type="EnsemblBacteria" id="SHH43431">
        <property type="protein sequence ID" value="SHH43431"/>
        <property type="gene ID" value="SAMN05444003_3188"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1140.32">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01309_B">
        <property type="entry name" value="Ribosomal_S3_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004087">
        <property type="entry name" value="KH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004044">
        <property type="entry name" value="KH_dom_type_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009019">
        <property type="entry name" value="KH_sf_prok-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005704">
        <property type="entry name" value="Ribosomal_S3_bac-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001351">
        <property type="entry name" value="Ribosomal_S3_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036419">
        <property type="entry name" value="Ribosomal_S3_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018280">
        <property type="entry name" value="Ribosomal_S3_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07650">
        <property type="entry name" value="KH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00189">
        <property type="entry name" value="Ribosomal_S3_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00322">
        <property type="entry name" value="KH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54814">
        <property type="entry name" value="SSF54814"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54821">
        <property type="entry name" value="SSF54821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01009">
        <property type="entry name" value="rpsC_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50823">
        <property type="entry name" value="KH_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00548">
        <property type="entry name" value="RIBOSOMAL_S3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8 10" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="5 8 10" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4 8 9" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 8" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="KH type-2" evidence="12">
        <location>
            <begin position="39"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="213"/>
            <end position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010761"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00016776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00024998"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01309"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003624"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHH43431.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="233" mass="26529" checksum="B74BC681AA221C23" modified="2017-03-15" version="1">MGNKVNPVGMRLQVNRTWDSRWYADTKDYGDLLLEDLKIKAFIKEECRQSGISRVIIERPHKKCRVTIHAARPGVIIGKKGADIEGLRKKLSQLTDSELHLNIVEVRKPELDAALVAENIGQQLERRVSFRRAMKRAVQNSMRMGALGIRVNVAGRLGGAEIARTEWYREGRVPLHTLRADIDYAHYEAMTPYGIIGIKVWIFKGEIMEHDPQARDRKNAELQEGAVPRGGRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SYI4</accession>
    <name>A0A1M5SYI4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">50S ribosomal protein L23</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rplW</name>
        <name evidence="6" type="ORF">SAMN05444003_3195</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the universal ribosomal protein uL23 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH43587.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902793.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3195"/>
    <dbReference type="EnsemblBacteria" id="SHH43587">
        <property type="protein sequence ID" value="SHH43587"/>
        <property type="gene ID" value="SAMN05444003_3195"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01369_B">
        <property type="entry name" value="Ribosomal_L23_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012678">
        <property type="entry name" value="Ribosomal_L23/L15e_core_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013025">
        <property type="entry name" value="Ribosomal_L25/23"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11620">
        <property type="entry name" value="PTHR11620"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00276">
        <property type="entry name" value="Ribosomal_L23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54189">
        <property type="entry name" value="SSF54189"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006700"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH43587.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="98" mass="10698" checksum="ACAED8E90085FF0E" modified="2017-03-15" version="1">MSAKAEHYDVIRKPIITEKSTMASENGAVVFEVAIDSNKPMIKEAVEALFGVKVKAVNTTITKGKVKRFRGQLGTRKDVKKAYVTLEEGNTIDVSTGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SYJ9</accession>
    <name>A0A1M5SYJ9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3193</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH43546.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH43546">
        <property type="protein sequence ID" value="SHH43546"/>
        <property type="gene ID" value="SAMN05444003_3193"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.290">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023204">
        <property type="entry name" value="SP1917_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014580">
        <property type="entry name" value="UCP033199"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09966">
        <property type="entry name" value="DUF2200"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF033199">
        <property type="entry name" value="UCP033199"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH43546.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="122" mass="14065" checksum="FB636B8D99F1F2A7" modified="2017-03-15" version="1">MLPSKGKLMSHKLFKMSFASVYPHYVTKAEKKDRTKAQLDELITWLTGYDDAGLAEALEDQRDFEAFFAQAPAMNPNRRLITGVVCGIRVEEIEDPLMQEIRYLDKLVDELARGKKFENILR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SYU7</accession>
    <name>A0A1M5SYU7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Stress responsive A/B Barrel Domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3200</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH43691.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902802.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH43691">
        <property type="protein sequence ID" value="SHH43691"/>
        <property type="gene ID" value="SAMN05444003_3200"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013097">
        <property type="entry name" value="Dabb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07876">
        <property type="entry name" value="Dabb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00886">
        <property type="entry name" value="Dabb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51502">
        <property type="entry name" value="S_R_A_B_BARREL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Stress-response A/B barrel" evidence="1">
        <location>
            <begin position="7"/>
            <end position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51502"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH43691.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="97" mass="11187" checksum="EDF1B72FF87F0BA0" modified="2017-03-15" version="1">MTSRTFIRHIVFFSAKDKADVGRIVDGLSELAKIPHSDVFEVRQNSHQDTWSDEMDVVVYGEFKNQDALNAYKAHPIYQEAIRVVRPLRELRIAADI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T488</accession>
    <name>A0A1M5T488_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3229</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45526.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902881.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3229"/>
    <dbReference type="EnsemblBacteria" id="SHH45526">
        <property type="protein sequence ID" value="SHH45526"/>
        <property type="gene ID" value="SAMN05444003_3229"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="49"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH45526.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="269" mass="30401" checksum="AA36EF34876EC9C2" modified="2017-03-15" version="1">MDRRELSTEFRERFRLLIDDVSDDLPGFLKRTGLDRSALSQLRDPKLDRLPRAETLRNIAEATGVSVDWLLALENAREGRQQMTESKELLASDPAAGQSPLTRWRNEAAGHKLRYVPATLPDMLSLNPESEGAEGEEKVLTGFDLSEVDLEIAMPMQTLQTLAKRQGLWEGQTHALAQSQLKQIATLCERHYPALRLHLFDGAEHFIAPFTVFGRMRAAVYVGNAYVSVTGPEEVKFFTQQFDRLVRLATVAPDQIWSWIGDLQSEIRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TBX7</accession>
    <name>A0A1M5TBX7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Helix-turn-helix domain of resolvase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_3319</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the site-specific recombinase resolvase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000010">
        <property type="protein sequence ID" value="SHH48219.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3319"/>
    <dbReference type="EnsemblBacteria" id="SHH48219">
        <property type="protein sequence ID" value="SHH48219"/>
        <property type="gene ID" value="SAMN05444003_3319"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000150">
        <property type="term" value="F:DNA strand exchange activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1390">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006118">
        <property type="entry name" value="Recombinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006119">
        <property type="entry name" value="Resolv_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036162">
        <property type="entry name" value="Resolvase-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006120">
        <property type="entry name" value="Resolvase_HTH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02796">
        <property type="entry name" value="HTH_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00239">
        <property type="entry name" value="Resolvase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00857">
        <property type="entry name" value="Resolvase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53041">
        <property type="entry name" value="SSF53041"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00398">
        <property type="entry name" value="RECOMBINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51736">
        <property type="entry name" value="RECOMBINASES_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0229">DNA integration</keyword>
    <keyword evidence="4" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Resolvase/invertase-type recombinase catalytic" evidence="5">
        <location>
            <begin position="1"/>
            <end position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009913"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51736"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH48219.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="137" mass="14931" checksum="24F0AE9ED667A600" modified="2017-03-15" version="1">MLAYIRSGDEVVVFSIDRLARNLRDLEDIIKEINAKGASVTFLSESLTFSGSDDAMSTLMLQMMGSFAQFERSMILKRQAEGIALAKAKGAYKGRKASIDREVVSNMIKAGSSLTSIAKSLGISRQSVHRIKAELAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5KZ04</accession>
    <name>A0A1M5KZ04_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Amidohydro_3 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0002</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG57945.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898319.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0002"/>
    <dbReference type="EnsemblBacteria" id="SHG57945">
        <property type="protein sequence ID" value="SHG57945"/>
        <property type="gene ID" value="SAMN05444003_0002"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016810">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01300">
        <property type="entry name" value="YtcJ_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013108">
        <property type="entry name" value="Amidohydro_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011059">
        <property type="entry name" value="Metal-dep_hydrolase_composite"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033932">
        <property type="entry name" value="YtcJ-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07969">
        <property type="entry name" value="Amidohydro_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51338">
        <property type="entry name" value="SSF51338"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidohydro_3" evidence="1">
        <location>
            <begin position="123"/>
            <end position="610"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07969"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG57945.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="612" mass="65987" checksum="2F3CF190B44A5D24" modified="2017-03-15" version="1">MEKQVFGCTCCNGFYSEFLKHSFEGSQFDSDGRRKGGWSCSGAAEWLALQNDDLPTGHVAEAIWGSDEAPEATTTTTVFLNGTVLTVDAEFSQAEAIAIQNEKILAVGTEADVRAAASEEATIIDLDGKVLLPGFVEAHTHVVAGSIVDALMEYVGMARFQSTAEVLDLIAKRAEAAHPGQWLTFRNFDPAVQDGPKELTFAELDAIPTENPIMILNASGHLAYANSAAFAMAGIDDSVEDPPGGEYGRDQFGRLNGVMRNNVSFTPVANANPAMAEVDPVNGLIALLSKWSAVGLTTVSELALGGLTQSPKDAEVMLGAAATGQLTARIRGYAFYTVGTEAWDAAGVVPGTGNAIARVAGYKLVADGSNQGFTGLQREPYLNTDDYGMAYMSPEELTATAIDRASKGWQIAVHGNGDAAIDNILDACDAMQEAGIDLEQVRIRIEHCSILHDEQVARMKDLKVSASFLIGHVYYWGVAMRDIVFGEEKAQLLDRCKSAEEAGIGFSLHSDFMVTDPVPLHMMEIAVTRRTWKEPDYVLAPTERVSIESAIRAMTYEAAWQLNSEHEIGSLEVGKFADLVILDADPRTVEPDQIKSIKVLETWMNGRQVYAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5KZL5</accession>
    <name>A0A1M5KZL5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="10">ATP-binding cassette, subfamily B, MsbA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_0019</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58312.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898341.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0019"/>
    <dbReference type="EnsemblBacteria" id="SHG58312">
        <property type="protein sequence ID" value="SHG58312"/>
        <property type="gene ID" value="SAMN05444003_0019"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221">
        <property type="entry name" value="PTHR24221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="21"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="59"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="135"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="161"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="245"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="24"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="340"/>
            <end position="573"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="372"/>
            <end position="379"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG58312.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="581" mass="63683" checksum="5D4A4A3F8BE113BE" modified="2017-03-15" version="1">MRQNDSHIRWLWRDYLSRHKGKIALAFIFMVIEGSMLAVLSRLIQPMFDQVFLEGSQTALIWVGATIMTVFFIRAVSSAAQKITMTNVIQRSARDMRSDLLRHLLYLDSSYHQTHPPGQLIERVQSDVQVINRSWAALLVGVGRDLIAVVALFSVALSIDWAWTLIALIGIPFMIAPSLLAQRYVRKRAARARLLAGRMATRLDEAFHGVNPIKLNALEDYQGDQFDALSDQRVKAEVRAVTGQAMVPALIDIMTGIGFLGVMIYGGGEIISGEKTVGEFMAFFTAMSLTFEPLRRLGQMSGTWQMAAASMDRVREIFNVAPTLVSPSDPIALPDGQPNLVLSDVELQYDELPVLRGLSFEAEAGKTTALVGASGAGKSTIFNVLTRLIDPHSGSVTVNGADITSLDIGALRGLYSVVTQDAALFDDTIRENILLGREDVPSETLARVMDAAHITDFVEKLPNDLDSEAGPRGSNLSGGQRQRVAIARALLRETPILLLDEATSALDTKSEAIVQEALETLSKGRTTLVIAHRLSTVRNADKIVVMDRGKVVDEGTHEALLERGGIYADLYRMQFSEDAHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L5W1</accession>
    <name>A0A1M5L5W1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">VPLPA-CTERM protein sorting domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0119</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60381.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG60381">
        <property type="protein sequence ID" value="SHG60381"/>
        <property type="gene ID" value="SAMN05444003_0119"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022472">
        <property type="entry name" value="VPLPA-CTERM"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03370">
        <property type="entry name" value="VPLPA-CTERM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012816012" evidence="2">
        <location>
            <begin position="23"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="183"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG60381.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="212" mass="21984" checksum="FEE3E5E8C13A68ED" modified="2017-03-15" version="1">MKLVNKAAAIATIIFTGFEANAASINPAEFGLKEASTLYATTGAGTLVYSPIAEIDVGGFPVTIPAKLSYTVPNLITGLVKGEATAAGSNTNVLIPANHNLIIDDGLPTQVEATGASALVFEDDIVNGLLEILFVDENISGADYDGLLVRAEGKFGEISEFSSSFSWDTANISVIELSSITPVPIPAGFPLLLTAIAGFAGLGLRKKRKVEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L6I6</accession>
    <name>A0A1M5L6I6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Phosphoribosyl-ATP pyrophosphatase</fullName>
            <shortName evidence="9">PRA-PH</shortName>
            <ecNumber evidence="9">3.6.1.31</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">hisE</name>
        <name evidence="10" type="ORF">SAMN05444003_0127</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>1-(5-phospho-beta-D-ribosyl)-ATP + H2O = 1-(5-phospho-beta-D-ribosyl)-5'-AMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:22828"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:59457"/>
            <dbReference type="ChEBI" id="CHEBI:73183"/>
            <dbReference type="EC" id="3.6.1.31"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 9">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 2/9.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the PRA-PH family.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.31" evidence="9"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60545.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898484.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0127"/>
    <dbReference type="EnsemblBacteria" id="SHG60545">
        <property type="protein sequence ID" value="SHG60545"/>
        <property type="gene ID" value="SAMN05444003_0127"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00007"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004636">
        <property type="term" value="F:phosphoribosyl-ATP diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd11534">
        <property type="entry name" value="NTP-PPase_HisIE_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01020">
        <property type="entry name" value="HisE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008179">
        <property type="entry name" value="HisE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021130">
        <property type="entry name" value="PRib-ATP_PPHydrolase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01503">
        <property type="entry name" value="PRA-PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03188">
        <property type="entry name" value="histidine_hisI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 9" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="8 9" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="6 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01020"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG60545.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="101" mass="10930" checksum="1112D26CBD9F97CD" modified="2017-03-15" version="1">MTLSDLYATIEARKSANPNSSWTAKLLTQGPEKCAEKFGEEAIEAIIEATKGDKTRLTSEAADVLYHLLVMLAASGVHLNDVLAELARRQGTSGIEEKANR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L7Q4</accession>
    <name>A0A1M5L7Q4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Gamma-glutamylmethylamide synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0137</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the glutamine synthetase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60779.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898495.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0137"/>
    <dbReference type="EnsemblBacteria" id="SHG60779">
        <property type="protein sequence ID" value="SHG60779"/>
        <property type="gene ID" value="SAMN05444003_0137"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004356">
        <property type="term" value="F:glutamate-ammonia ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006542">
        <property type="term" value="P:glutamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009399">
        <property type="term" value="P:nitrogen fixation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036651">
        <property type="entry name" value="Gln_synt_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014746">
        <property type="entry name" value="Gln_synth/guanido_kin_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008146">
        <property type="entry name" value="Gln_synth_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027303">
        <property type="entry name" value="Gln_synth_gly_rich_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017536">
        <property type="entry name" value="Glutamine_synthetase_typeIII"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00120">
        <property type="entry name" value="Gln-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01230">
        <property type="entry name" value="Gln-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54368">
        <property type="entry name" value="SSF54368"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55931">
        <property type="entry name" value="SSF55931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03105">
        <property type="entry name" value="gln_synth_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00181">
        <property type="entry name" value="GLNA_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0535">Nitrogen fixation</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Gln-synt_C" evidence="4">
        <location>
            <begin position="97"/>
            <end position="356"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU000384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM01230"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG60779.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="442" mass="48830" checksum="F8C6E2DC1182625A" modified="2017-03-15" version="1">MATDLAQFAKDNGVKYFMISFTDLFGGQRAKLVPASAIADMQEDGAGFAGFATWLDLTPAHPDMLAVPDPEAVIILPWNKEIAWVPGNCVMEDEPVAQAPRNVLRRLIDEAAAEGMHVKTGIEAEFFLLTPDGSQISDEYDTAAKPCYDQQAFMRRLDVIREISDYMLELGWGPYQNDHEDANGQWEMNWEFDDALNTADKHSFFKFMVKTVAEKHGYRATFMPKPVEGLTGNGCHAHISVWDAPGSAAKTNVFAGTGEGQTGEVGLSERGKHFLGGIMKHASALAAITNPTVNSYKRINAPRTMSGATWAPNTVTWTGNNRTHMVRVPGPGRFELRLPDGATNPYLLQAVIIAAGLSGIRSKADPGKRHDIDMYAEGHKVRGAPKLPLNMLDALRAYDKDKDLKASMGDEFSAAYLKMKHEEWNSYVSHFSQWEKDNTMDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LF85</accession>
    <name>A0A1M5LF85_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">TRAP-type C4-dicarboxylate transport system, substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0261</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial solute-binding protein 7 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63731.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898688.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0261"/>
    <dbReference type="EnsemblBacteria" id="SHG63731">
        <property type="protein sequence ID" value="SHG63731"/>
        <property type="gene ID" value="SAMN05444003_0261"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071702">
        <property type="term" value="P:organic substance transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018389">
        <property type="entry name" value="DctP_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038404">
        <property type="entry name" value="TRAP_DctP_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33376">
        <property type="entry name" value="PTHR33376"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03480">
        <property type="entry name" value="DctP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0574">Periplasm</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013177833" evidence="6">
        <location>
            <begin position="24"/>
            <end position="354"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG63731.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="354" mass="38258" checksum="35066AEB9C1B0468" modified="2017-03-15" version="1">MLKTLTKVAATAALLATPFAAWADGHQEFTIRATANSNENDEDYDGLVVFKNYVESASNGRIGVELFIGTQLCGNGAECLEGVAEGTIDVYISTSGGAAGIFPYVQVLDLPYLMADDRVAEAVLTGDFTRKMRDMALETSDGAIRLMTIGNTGGWRNFANTQRRLASPADFEGLKIRTVVADLPQILVQELGASATPIPWPELFTSFQTGVVDGSKNGITDIMGMKFPDAGLQYLTLDGHAYMGALWWMSNENFMAMPEDLRRVVVDGFSQLQQATFASPKRKSIQAYQDFVAGGGDLYVPTPEEKATFAEAAAPVQDWFRSNVDGGDEILDALIEAVAEAEAELADDYAKDLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LGE8</accession>
    <name>A0A1M5LGE8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Sec-independent protein translocase protein TatC</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">tatC</name>
        <name evidence="6" type="ORF">SAMN05444003_0276</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">The Tat system comprises two distinct complexes: a TatABC complex, containing multiple copies of TatA, TatB and TatC subunits, and a separate TatA complex, containing only TatA subunits. Substrates initially bind to the TatABC complex, which probably triggers association of the separate TatA complex to form the active translocon.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the TatC family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64141.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898709.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0276"/>
    <dbReference type="EnsemblBacteria" id="SHG64141">
        <property type="protein sequence ID" value="SHG64141"/>
        <property type="gene ID" value="SAMN05444003_0276"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033281">
        <property type="term" value="C:TAT protein transport complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008320">
        <property type="term" value="F:protein transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043953">
        <property type="term" value="P:protein transport by the Tat complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00902">
        <property type="entry name" value="TatC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002033">
        <property type="entry name" value="TatC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30371">
        <property type="entry name" value="PTHR30371"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00902">
        <property type="entry name" value="TatC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01840">
        <property type="entry name" value="TATCFAMILY"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0653">Protein transport</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0811">Translocation</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="31"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="76"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="116"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="210"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="244"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="265"/>
            <end position="285"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG64141.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="321" mass="34727" checksum="7F2F97B4EF3BE11D" modified="2017-03-15" version="1">MSTTDEIEDSSAPLIEHLAELRTRLIRSVGAFLVAMIICFSFGSTILDFLLIPIEETLRALGDPNPVMQYTAPQEYFFTLVRISVVGGLILAFPVIAFQLWRFVAPGLYKNEKNAFLPFLIASPFLFLLGAVFAHYVVVPLAMTFFLGFADIPSMVHALINENFQPPADGAALLPGAGGGAALPTTTEDAGIDIVFIGKVNESLDITLKMIVAFGLCFQLPVLLTLMGTAGLASSRGLRNTRKYAVVGILMVAALVTPPDVVTQVILFTVVYGLYEISIHLVAAVERKKDRQARAEGVIGEGESLFDDIEDDADIEEEAAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LHC5</accession>
    <name>A0A1M5LHC5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 4">Orotate phosphoribosyltransferase</fullName>
            <shortName evidence="4">OPRT</shortName>
            <shortName evidence="4">OPRTase</shortName>
            <ecNumber evidence="2 4">2.4.2.10</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">pyrE</name>
        <name evidence="6" type="ORF">SAMN05444003_0294</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>diphosphate + orotidine 5'-phosphate = 5-phospho-alpha-D-ribose 1-diphosphate + orotate</text>
            <dbReference type="Rhea" id="RHEA:10380"/>
            <dbReference type="ChEBI" id="CHEBI:30839"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57538"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="EC" id="2.4.2.10"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="1 4">Pyrimidine metabolism; UMP biosynthesis via de novo pathway; UMP from orotate: step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrE subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.10" evidence="2 4"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64532.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898725.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0294"/>
    <dbReference type="EnsemblBacteria" id="SHG64532">
        <property type="protein sequence ID" value="SHG64532"/>
        <property type="gene ID" value="SAMN05444003_0294"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00070">
        <property type="reaction ID" value="UER00119"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004588">
        <property type="term" value="F:orotate phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044205">
        <property type="term" value="P:'de novo' UMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01208">
        <property type="entry name" value="PyrE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023031">
        <property type="entry name" value="OPRT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004467">
        <property type="entry name" value="Or_phspho_trans_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00156">
        <property type="entry name" value="Pribosyltran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00336">
        <property type="entry name" value="pyrE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 4" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pribosyltran" evidence="5">
        <location>
            <begin position="64"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="region of interest" description="5-phosphoribose 1-diphosphate binding" evidence="4">
        <location>
            <begin position="133"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="107"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="108"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="111"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="137"/>
        </location>
        <ligand>
            <name>orotate</name>
            <dbReference type="ChEBI" id="CHEBI:30839"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01208"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG64532.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="222" mass="24197" checksum="F92C8C53A586A60C" modified="2017-03-15" version="1">MIPTSFPSKEEIARLTAGMLIEIGAIDFNATEPFTHASGKQAPTYVDCRKLISFPRIRSTLMDFLAVTIMREAGFEAFDNVAGGETAGIPFGAMIAERLALPMTYVRKKPKGYGRNARIEGVMTEGQRVILVEDLTTDGGSKLSFVDAIRETGATCNATAVIFYYGIFEGVEDNLAKHGVQLLSLCTWWDVLAEAKARNAYDPETLNAVEAYLNDPSGWSPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LIH1</accession>
    <name>A0A1M5LIH1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6">Triosephosphate isomerase</fullName>
            <shortName evidence="5">TIM</shortName>
            <shortName evidence="5">TPI</shortName>
            <ecNumber evidence="5 6">5.3.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Triose-phosphate isomerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">tpiA</name>
        <name evidence="7" type="ORF">SAMN05444003_0315</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5 6">
            <text>D-glyceraldehyde 3-phosphate = dihydroxyacetone phosphate</text>
            <dbReference type="Rhea" id="RHEA:18585"/>
            <dbReference type="ChEBI" id="CHEBI:57642"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="EC" id="5.3.1.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>L-erythrulose 1-phosphate = D-erythrulose 4-phosphate</text>
            <dbReference type="Rhea" id="RHEA:49588"/>
            <dbReference type="ChEBI" id="CHEBI:58002"/>
            <dbReference type="ChEBI" id="CHEBI:90796"/>
            <dbReference type="EC" id="5.3.1.33"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="5 6">Carbohydrate biosynthesis; gluconeogenesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="5 6">Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate from glycerone phosphate: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Carbohydrate metabolism; erythritol degradation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5 6">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5 6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5 6">Belongs to the triosephosphate isomerase family.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.1" evidence="5 6"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64944.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898761.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0315"/>
    <dbReference type="EnsemblBacteria" id="SHG64944">
        <property type="protein sequence ID" value="SHG64944"/>
        <property type="gene ID" value="SAMN05444003_0315"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00189"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00138"/>
    <dbReference type="UniPathway" id="UPA01066"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004807">
        <property type="term" value="F:triose-phosphate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006094">
        <property type="term" value="P:gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00311">
        <property type="entry name" value="TIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00147_B">
        <property type="entry name" value="TIM_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035990">
        <property type="entry name" value="TIM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022896">
        <property type="entry name" value="TrioseP_Isoase_bac/euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000652">
        <property type="entry name" value="Triosephosphate_isomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020861">
        <property type="entry name" value="Triosephosphate_isomerase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21139">
        <property type="entry name" value="PTHR21139"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00121">
        <property type="entry name" value="TIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51351">
        <property type="entry name" value="SSF51351"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00419">
        <property type="entry name" value="tim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00171">
        <property type="entry name" value="TIM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51440">
        <property type="entry name" value="TIM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 5 6" id="KW-0312">Gluconeogenesis</keyword>
    <keyword evidence="5 6" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="4 5 6" id="KW-0413">Isomerase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="9"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="226"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="active site" description="Electrophile" evidence="5">
        <location>
            <position position="91"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="5">
        <location>
            <position position="161"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="167"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="205"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000148"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004939"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00147"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU363013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG64944.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="245" mass="25039" checksum="D52A61602FB43D24" modified="2017-03-15" version="1">MPRKIAAGNWKMNGTASDLGEILALVTDHPDPNVDVVICPPATLVSSLAQMDGPVQTGGQDCHAAVSGAHTGDISATMLAAAGASHVIVGHSERRTDHGETDALIASKSKAAYDAGLVAIICIGETLEEREAGTTLDVLDVQLDGSIPDTAHAAYTVIAYEPVWAIGTGKVPTTDQIAEVHAHIRAKLAGRFADGAEFSLLYGGSVKGSNAAEIFEVPHVDGALVGGASLKAADFSPIVSALENA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LJC9</accession>
    <name>A0A1M5LJC9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0326</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65128.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898769.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0326"/>
    <dbReference type="EnsemblBacteria" id="SHG65128">
        <property type="protein sequence ID" value="SHG65128"/>
        <property type="gene ID" value="SAMN05444003_0326"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002933">
        <property type="entry name" value="Peptidase_M20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011650">
        <property type="entry name" value="Peptidase_M20_dimer"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07687">
        <property type="entry name" value="M20_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01546">
        <property type="entry name" value="Peptidase_M20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="M20_dimer" evidence="2">
        <location>
            <begin position="198"/>
            <end position="356"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG65128.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="457" mass="49964" checksum="27CD7D562B137D73" modified="2017-03-15" version="1">MTLSAVLDQIDADLDQSTDRLLELLRIQSISTDPAYKAECDRAADWLVEDLKTIGFDASKRETPGHPMVVAHSGGDGPHVMFYGHYDVQPIDPIDLWDRDPFDPQIEDTAKGKVIRGRGSSDDKGQLMTFVEACRAWKAVHGMLPANISIFFEGEEESGSPSLIPFMKDNAEELTADIALICDTGLYGDSTPAIITQLRGLLGEEITITGPNKDLHSGMYGGIAMNPARVLARIIASLHDDAGRITIPGFYDGVPELSNELAASWDDLKFDEKEFLGEVGLSKPAGEQGRRPLEMIWSRPTCEVNGMTSGYTGEGFKTVLPSIASAKISFRLVGTQDPFAIRENFREMVRTMIPEDCSVEFSDHGAGPAGHMNTTHPAFDQARKALSDEWPNAAAYVGCGGSIPIAGYFKDILDMDAMLIGFGKDDDQIHSPNEKYDLSSFHKGIRSWARILAEMTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LKK4</accession>
    <name>A0A1M5LKK4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein CcmA, bactofilin family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0347</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65558.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898800.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0347"/>
    <dbReference type="EnsemblBacteria" id="SHG65558">
        <property type="protein sequence ID" value="SHG65558"/>
        <property type="gene ID" value="SAMN05444003_0347"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007607">
        <property type="entry name" value="BacA/B"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35024">
        <property type="entry name" value="PTHR35024"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04519">
        <property type="entry name" value="Bactofilin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="133"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="140"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG65558.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="157" mass="16100" checksum="2996D11FDFFCC9F7" modified="2017-03-15" version="1">MFSKSKINEPGPSADTPAKAESKPAAPAPSTPAPSAPKAKPPASQLSSDLLITGNLKTSGDIQIEGQVEGDIRAHLLTVGEGATVKGEVVADDVVVNGRIVGRVRGLKVRLTSTARVEGDIIHKTIAIESGAHFEGSVQRQDDPLSSGSSSKAKATD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LKU4</accession>
    <name>A0A1M5LKU4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Iron-sulfur cluster assembly protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0317</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the HesB/IscA family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64983.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898763.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0317"/>
    <dbReference type="EnsemblBacteria" id="SHG64983">
        <property type="protein sequence ID" value="SHG64983"/>
        <property type="gene ID" value="SAMN05444003_0317"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016226">
        <property type="term" value="P:iron-sulfur cluster assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.300.12">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000361">
        <property type="entry name" value="FeS_biogenesis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016092">
        <property type="entry name" value="FeS_cluster_insertion"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035903">
        <property type="entry name" value="HesB-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01521">
        <property type="entry name" value="Fe-S_biosyn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89360">
        <property type="entry name" value="SSF89360"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00049">
        <property type="entry name" value="TIGR00049"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fe-S_biosyn" evidence="2">
        <location>
            <begin position="10"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006718"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01521"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG64983.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="120" mass="12930" checksum="528777D955A44503" modified="2017-03-15" version="1">MFGIPGKQAVTITDKAAAQIAKLMAKDGHEGLRIGVKKGGCAGMEYTMDYVTEVDPLDEVVEQDGARVMIAPMAQMFLFGTEIDYEVSLLESGFKFRNPNVVDACGCGESIKFDESLAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LNQ6</accession>
    <name>A0A1M5LNQ6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">N-acetyltransferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0393</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66586.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898866.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0393"/>
    <dbReference type="EnsemblBacteria" id="SHG66586">
        <property type="protein sequence ID" value="SHG66586"/>
        <property type="gene ID" value="SAMN05444003_0393"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="39"/>
            <end position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG66586.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="197" mass="21852" checksum="B785E441DDB65F89" modified="2017-03-15" version="1">MSLDAGLYPVPEGHLAAVVTHLETTAVAVPDSPFPDDVSIERDLPSVERYRALFRAIGAPWLWTSRLKLSDSKLAEILSDQDVEVWLLRRHGIDIGVVELDFRVAGECELAFFGLIPTETGGGLGKAMMSFAQKRGFSRPIKRFHLHTCTLDSPKAVPFYLASGLRPTRRQVEIFEDPRLAGYLGEDTAPQHPLIET</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LR77</accession>
    <name>A0A1M5LR77_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">RDD family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0432</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67515.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898921.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0432"/>
    <dbReference type="EnsemblBacteria" id="SHG67515">
        <property type="protein sequence ID" value="SHG67515"/>
        <property type="gene ID" value="SAMN05444003_0432"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010432">
        <property type="entry name" value="RDD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06271">
        <property type="entry name" value="RDD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="28"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="53"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="107"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="domain" description="RDD" evidence="6">
        <location>
            <begin position="24"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF06271"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG67515.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="149" mass="16650" checksum="9B2724ACA7E2338F" modified="2017-03-15" version="1">MTTATMMSGLPDPHSQSQFYDGVLFKRAMAWVIDVVMIALLCLLVLPFTAFTGVFFFPFLMLIVGVFYRWFTLSGQSSTWGMRLMSIEFRDHAGQRFDSSTALFHTLGYTVSVAMAPLQLISVIMMVVTPRGQGLTDHLMGTAPINKPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MBK6</accession>
    <name>A0A1M5MBK6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0741</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the FAD-binding monooxygenase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74625.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899395.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0741"/>
    <dbReference type="EnsemblBacteria" id="SHG74625">
        <property type="protein sequence ID" value="SHG74625"/>
        <property type="gene ID" value="SAMN05444003_0741"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004499">
        <property type="term" value="F:N,N-dimethylaniline monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000960">
        <property type="entry name" value="Flavin_mOase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020946">
        <property type="entry name" value="Flavin_mOase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00743">
        <property type="entry name" value="FMO-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000332">
        <property type="entry name" value="FMO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00370">
        <property type="entry name" value="FMOXYGENASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0274">FAD</keyword>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG74625.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="438" mass="49026" checksum="4F2824FB98572ADC" modified="2017-03-15" version="1">MSVTRERFALIGAGPMGLATAKLLVEHGIEFQGFEMHSGVGGLWDIDGPRSTMYESAHLISSKRMTEFADFPMRDEVAEYPSHRDLKEYFQEFAKNFDLERRYHFGATVLSCTPLGGTGEGWTVKWKDADGEYTEEFSGVLIANGTLSTPNLPEFKGDFDGELIHSSEYRYASQFDGKRVLVIGAGNSGCDIAVDAIHHGTSCDLSMRRGYYFVPKYVFGKPADTMGGAIKLPMRLKRIVDGTILRWFVGNPQKYGFPKPDYKLYESHPIVNSLVLYHAGHGDLEVKPDVERFDGRMVHFKDGTSAEYDMILAATGYKLDYPFIDSALLNWNGDAPYLYLNCFHPQRDDLFVLGMIEASGLGWQGRHEQAEMVVRYIKGLNDGSKDAAELQATKSGDFDRATGGMNYIDLPRMAYYVDKATYRKAVTNWIGKLKGSIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MCS5</accession>
    <name>A0A1M5MCS5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Xaa-Pro aminopeptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0760</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75025.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899419.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0760"/>
    <dbReference type="EnsemblBacteria" id="SHG75025">
        <property type="protein sequence ID" value="SHG75025"/>
        <property type="gene ID" value="SAMN05444003_0760"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004177">
        <property type="term" value="F:aminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008235">
        <property type="term" value="F:metalloexopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046914">
        <property type="term" value="F:transition metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029149">
        <property type="entry name" value="Creatin/AminoP/Spt16_NTD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036005">
        <property type="entry name" value="Creatinase/aminopeptidase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000587">
        <property type="entry name" value="Creatinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000994">
        <property type="entry name" value="Pept_M24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001714">
        <property type="entry name" value="Pept_M24_MAP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01321">
        <property type="entry name" value="Creatinase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00557">
        <property type="entry name" value="Peptidase_M24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00599">
        <property type="entry name" value="MAPEPTIDASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53092">
        <property type="entry name" value="SSF53092"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55920">
        <property type="entry name" value="SSF55920"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Creatinase_N" evidence="2">
        <location>
            <begin position="15"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M24" evidence="1">
        <location>
            <begin position="167"/>
            <end position="367"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG75025.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="384" mass="42262" checksum="C183ED22354058A8" modified="2017-03-15" version="1">MVAARGFEDHEYETRIANAQSRMMELGLSALLLTTETDVRYFTGFLTRFWESPTRPWFIVIPLTGEPIAVIPSIGADLMAGTWISDIRTWQSPDLEDDGVSLLCDALDEVVPNNGQIGLPDGHETQVRMPLADLMRLQKRLEPRQIVGDHGILRDLRTIKSEAEIAKIETACQIAGRAFDRVPEIAKKGEPLDLVFRRFQMLCLQEGADWVPYLAGGAEQGGYSDVISPASPKELVSGDVLMLDTGMVFDGYFCDYDRNWSIGRPKHSVADAFKKLIDASDAAFELARPGKTAADMFHAMNNILSVGGPDTGAGRLGHGLGMSLTEWPSFIPTDHTELKPGMVLTLEPGIAVEGKILVHEENIVITDNSARFLSPRAGRELQEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MDI7</accession>
    <name>A0A1M5MDI7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0773</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75296.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899435.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG75296">
        <property type="protein sequence ID" value="SHG75296"/>
        <property type="gene ID" value="SAMN05444003_0773"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG75296.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="94" mass="10649" checksum="57447279F27E3C58" modified="2017-03-15" version="1">MTETIRIDLDEVKVHRNAGEYHFKGRARSSLGHEVVGHGPNLTNLVAILREENPHFEGLLEVYRGDTLCFNPMPLKTAFCKGPMPKQFRKETSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MDY2</accession>
    <name>A0A1M5MDY2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Glucans biosynthesis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_0786</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="2">Glycan metabolism; osmoregulated periplasmic glucan (OPG) biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the OpgD/OpgG family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75594.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899460.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0786"/>
    <dbReference type="EnsemblBacteria" id="SHG75594">
        <property type="protein sequence ID" value="SHG75594"/>
        <property type="gene ID" value="SAMN05444003_0786"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00637"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016051">
        <property type="term" value="P:carbohydrate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.98.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011013">
        <property type="entry name" value="Gal_mutarotase_sf_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014718">
        <property type="entry name" value="GH-type_carb-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014438">
        <property type="entry name" value="Glucan_biosyn_MdoG/MdoD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007444">
        <property type="entry name" value="Glucan_biosyn_MdoG_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014756">
        <property type="entry name" value="Ig_E-set"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30504">
        <property type="entry name" value="PTHR30504"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04349">
        <property type="entry name" value="MdoG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006281">
        <property type="entry name" value="MdoG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74650">
        <property type="entry name" value="SSF74650"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81296">
        <property type="entry name" value="SSF81296"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0574">Periplasm</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MdoG" evidence="5">
        <location>
            <begin position="36"/>
            <end position="505"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005001"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04349"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG75594.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="507" mass="56282" checksum="ADCEA3393604AD5E" modified="2017-03-15" version="1">MLRREFLAFVAALTASPALSQEAEKKGLQLSDGAAFDPNDVLEMARRLAQSPYVAPTRIPEEWTEIDYEDYVSIWFDVRNALWNDEPDTPLRLDVFAPGLYFPVPINISVVEEGIAQPLAFDFDLFDKTDKFPDLPVDETLGYSGLRLRAELEKQGIYQEFAVFQGASYFRAIGTGDIYGLSARGLAIDTASPNGEEFPDFRSFWIEKPTEGSKTFVVHALLDSPSAAGAYRFEITHGQPLVMDITANILPRRDLTNVGIAPLTSMFQYDQTNRSRFTDWRPAVHDSDGLLINNGAGETIWRPLANPVNLQVSAFVDNNPKGFGLMQRAREYGDFADLQAHYHRRPCAWVEPIGEWGEGSVTLVEIPTPSEIFDNIVCYWQPNGGLPAGSENTFEYRLTWGDDVAHGEGLIALNTMIGSGFDNDGIIVAIDFENGPTVPEDLSEIDIVVNGSAGNPSGGVVQRNPETGGPRLAFKFHPSEEKLIEFRAQLYKAGAPLTEVWLYRWTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MF64</accession>
    <name>A0A1M5MF64_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0798</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75861.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899473.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0798"/>
    <dbReference type="EnsemblBacteria" id="SHG75861">
        <property type="protein sequence ID" value="SHG75861"/>
        <property type="gene ID" value="SAMN05444003_0798"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="36"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="65"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="123"/>
            <end position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG75861.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="146" mass="15961" checksum="88D186A4E41F58A1" modified="2017-03-15" version="1">MPTTGRLVGAICFAALGLYLGYLAQTFFEEGRIPTYWWPLCGLAGAWSGWVVVGKRAGRGYSPAIGNGLTGTATLIFWILFIMSFVDMIEKSFRRSYDDPLEALVDVFQLGIEHAVRLGQMDVIVTALVGGVLAGIVTEFFGRRFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MJ32</accession>
    <name>A0A1M5MJ32_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Alanine--tRNA ligase</fullName>
            <ecNumber evidence="11">6.1.1.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">Alanyl-tRNA synthetase</fullName>
            <shortName evidence="11">AlaRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">alaS</name>
        <name evidence="14" type="ORF">SAMN05444003_0833</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>ATP + L-alanine + tRNA(Ala) = AMP + diphosphate + L-alanyl-tRNA(Ala)</text>
            <dbReference type="Rhea" id="RHEA:12540"/>
            <dbReference type="Rhea" id="RHEA-COMP:9657"/>
            <dbReference type="Rhea" id="RHEA-COMP:9923"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78497"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="11">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="11">Consists of three domains; the N-terminal catalytic domain, the editing domain and the C-terminal C-Ala domain. The editing domain removes incorrectly charged amino acids, while the C-Ala domain, along with tRNA(Ala), serves as a bridge to cooperatively bring together the editing and aminoacylation centers thus stimulating deacylation of misacylated tRNAs.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 11">Belongs to the class-II aminoacyl-tRNA synthetase family.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.7" evidence="11"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76723.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899525.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0833"/>
    <dbReference type="EnsemblBacteria" id="SHG76723">
        <property type="protein sequence ID" value="SHG76723"/>
        <property type="gene ID" value="SAMN05444003_0833"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004813">
        <property type="term" value="F:alanine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006419">
        <property type="term" value="P:alanyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00036_B">
        <property type="entry name" value="Ala_tRNA_synth_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002318">
        <property type="entry name" value="Ala-tRNA-lgiase_IIc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018162">
        <property type="entry name" value="Ala-tRNA-ligase_IIc_anticod-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018165">
        <property type="entry name" value="Ala-tRNA-synth_IIc_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018164">
        <property type="entry name" value="Ala-tRNA-synth_IIc_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023033">
        <property type="entry name" value="Ala_tRNA_ligase_euk/bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003156">
        <property type="entry name" value="DHHA1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018163">
        <property type="entry name" value="Thr/Ala-tRNA-synth_IIc_edit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012947">
        <property type="entry name" value="tRNA_SAD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02272">
        <property type="entry name" value="DHHA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01411">
        <property type="entry name" value="tRNA-synt_2c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07973">
        <property type="entry name" value="tRNA_SAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00980">
        <property type="entry name" value="TRNASYNTHALA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00863">
        <property type="entry name" value="tRNA_SAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101353">
        <property type="entry name" value="SSF101353"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55186">
        <property type="entry name" value="SSF55186"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00344">
        <property type="entry name" value="alaS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50860">
        <property type="entry name" value="AA_TRNA_LIGASE_II_ALA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 11 14" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="7 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="12" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 11" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9 11" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 11" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 11" id="KW-0820">tRNA-binding</keyword>
    <keyword evidence="6 11" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="AA_TRNA_LIGASE_II_ALA" evidence="13">
        <location>
            <begin position="2"/>
            <end position="717"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="12">
        <location>
            <begin position="733"/>
            <end position="760"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="560"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="564"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="674"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="678"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00036"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50860"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="SHG76723.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="881" mass="94920" checksum="0756DEE600FE5C0E" modified="2017-03-15" version="1">MTSLADIRSTFLDYFDRQDHEVVASSPLVPRNDPTLMFTNSGMVQFKNRFTGVESGDYQRAATSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKNEAIPFAWELLTKDFGIDKSKLMTTVYHTDDEAFEIWKKLGVPEDRIIRIATDDNFWRMGPTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRFIEIWNVVFMQNEQFDDGSMVPLEMQSIDTGMGLERIAALLQGSHDNYDTDLFKALIEASAHATSTEPYGDQNVHHRVISDHLRSTSFLIAEGVLPSNEGRGYVLRRIMRRAMRHAHLLGAKDPVMHKLVPALVQQMGAAYPELGQGQKLIEETLLNEEVRFKTTLDRGLKLLDDELSGLPEGADLPGEAAFKLYDTYGFPLDLTQDALRERGRGVDSDGFDAAMAEQKAKARAAWSGTGEAENAAIWFDVAEENGATDFLGYESISAEGQIVAIVQDGEAQDSATGKVQVVLNQTPFYAESGGQVGDAGVLKTETGTVQVTDTKKVANVFIHIGELTDGEIKKGQGAELSVDPARRTAIQANHSATHLLNEALRNRLGDHIAQRGSLNAPDRLRFDFSHNTAVDASDLKAVEDEVNALIRQNSSVETRIMTPDDARALGAQALFGEKYGDEVRVVSMGIAEGSGKGTDGETYSLELCGGTHVKQLGEIGAFVALSDSASSAGVRRIEALTGQAALDHLSAQAAKLQTVAQTMKTPIGEIEERVKALLEERKVLSNEVAQLRRELAVGGSSSGPAQDDINGVAFIGQTLSGVSGKELPALVDQFKDRAGSGVVLLISDAGGKAAIAAGVTKDLTEKFNAVDLLRTAVEALGGKGGGGRPDMAQGGAASAEKADDAIAAVKAKLAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MMH5</accession>
    <name>A0A1M5MMH5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Taurine dioxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0915</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78614.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899634.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0915"/>
    <dbReference type="EnsemblBacteria" id="SHG78614">
        <property type="protein sequence ID" value="SHG78614"/>
        <property type="gene ID" value="SAMN05444003_0915"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042098">
        <property type="entry name" value="TauD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003819">
        <property type="entry name" value="TauD/TfdA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02668">
        <property type="entry name" value="TauD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TauD" evidence="2">
        <location>
            <begin position="16"/>
            <end position="275"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02668"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG78614.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="282" mass="32178" checksum="5980DA11B1B2FEA1" modified="2017-03-15" version="1">MVQPKSNDYNTISAVPFAPNLGAEIYGVDLSEPISDEQFAEVEAAFHTYQVLFFKEQKEIPPQQHIDFGKRFGPLHAHPAAPTMAGFPEIFEIHATKDSKVANGEFWHSDVSCDETPPLGTMLQMHILPPCGGDTMFSDSYAAYDDLSEPIKKMLDGLTALHSSEHIYKGRYSDRGRNDKDIDCPEATHPIVRTHPDTGRKSLFVNRTFTTKINGLSDSESDAILEMLFQHAEHIDYQIRYRWSLNDMAFWDNRCCMHRAIWDYWPAERKGRRVTVKGERPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MMM6</accession>
    <name>A0A1M5MMM6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0912</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78548.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899629.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG78548">
        <property type="protein sequence ID" value="SHG78548"/>
        <property type="gene ID" value="SAMN05444003_0912"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5011979647" evidence="1">
        <location>
            <begin position="27"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG78548.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="136" mass="15073" checksum="573ABAC691F2582C" modified="2017-03-15" version="1">MCIKKFSAISALSIATVLALSSPTSAADEDRVTVRTELQVAMQRHVDRNLIEGVVLHVDLESGDLMELYPTTAHPMIMASDEYFIVRADLVDAEGGQFDVDYYMAETDRGYKVIRTEIDNRSDLKELVGAGLVAQY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MPB4</accession>
    <name>A0A1M5MPB4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LuxR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0932</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79027.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899661.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0932"/>
    <dbReference type="EnsemblBacteria" id="SHG79027">
        <property type="protein sequence ID" value="SHG79027"/>
        <property type="gene ID" value="SAMN05444003_0932"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005143">
        <property type="entry name" value="TF_LuxR_autoind-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036693">
        <property type="entry name" value="TF_LuxR_autoind-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03472">
        <property type="entry name" value="Autoind_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75516">
        <property type="entry name" value="SSF75516"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH luxR-type" evidence="2">
        <location>
            <begin position="139"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG79027.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="206" mass="22855" checksum="BB4778E103393E0B" modified="2017-03-15" version="1">MAAIEIKALGDDDLTEVAPSGYYIALRVGFASPVEEINYLRSDWVQHYTRQCFMMFDPVVRWVHANVGIKRWTDLADDDPRGILGQAQTFGMRYGVAVSVFDNNTAGHRSFGYFTRSDREFAAAEEEALLAYVTRRHLEMAPPTNLTSAEIEALRLVKEGLRLKEVAHELGVSEGAIKQRIKNAKAKLNANTSSQAATIAAQHGIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MPY2</accession>
    <name>A0A1M5MPY2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Protein translocase subunit SecD</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">secD</name>
        <name evidence="10" type="ORF">SAMN05444003_0947</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Forms a complex with SecF. Part of the essential Sec protein translocation apparatus which comprises SecA, SecYEG and auxiliary proteins SecDF-YajC and YidC.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell membrane</location>
            <topology evidence="9">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the SecD/SecF family. SecD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79296.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899691.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0947"/>
    <dbReference type="EnsemblBacteria" id="SHG79296">
        <property type="protein sequence ID" value="SHG79296"/>
        <property type="gene ID" value="SAMN05444003_0947"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015450">
        <property type="term" value="F:protein-transporting ATPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0065002">
        <property type="term" value="P:intracellular protein transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006605">
        <property type="term" value="P:protein targeting"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043952">
        <property type="term" value="P:protein transport by the Sec complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01463_B">
        <property type="entry name" value="SecD_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001036">
        <property type="entry name" value="Acrflvin-R"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005791">
        <property type="entry name" value="SecD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022813">
        <property type="entry name" value="SecD/SecF_arch_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022645">
        <property type="entry name" value="SecD/SecF_bac"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30081">
        <property type="entry name" value="PTHR30081"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02355">
        <property type="entry name" value="SecD_SecF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00702">
        <property type="entry name" value="ACRIFLAVINRP"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00916">
        <property type="entry name" value="2A0604s01"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01129">
        <property type="entry name" value="secD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 9" id="KW-0653">Protein transport</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 9" id="KW-0811">Translocation</keyword>
    <keyword evidence="4 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 9" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="386"/>
            <end position="404"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="482"/>
            <end position="504"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="510"/>
            <end position="539"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01463"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG79296.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="548" mass="58522" checksum="06E95BD39EBAA8C3" modified="2017-03-15" version="1">MLHISATKQVMIWLTVVVGLLLALPNGFYGQVESYNDAVEAGEEATGWPSFLPSGLVNLGLDLRGGAHLLAEVQVEDAHETLIESLWPEIRQALGAERATIGPFRQSADAPPATLRIQFQETDGIDRAVEIIRGLARPVQSLTGVGASDIEVTRGSNFVTVELSEAEKANINERTMQQSLEIIRRRIDEVGTREPTIQRQGAERILVQVPGVGSAQEVKDIIGTTAQLNFQPVVSIASSPDGIAGPGNEILPEATPDGVEPSVYYVLERTPVVSGEELVDAQPSFDQNGSPAVNFRFNVSGARKFGDYTLENIGQPFAIVLDDEVISAPTIQSHIAGGSGIITGNFSVEESTNLAVLLRAGALPAELEFLEERTIGPELGQDSIDAGQIACIVAGIMVLIFMFLSYGLFGLFANVALIVNVALIFGLLSLIGATLTLPGIAGIVLTIGMAVDANVIVFERIREELRTAKGPARAIELGYEKALSSILDANITTFITATILFVMGSGPVRGFAITLGLGIITSLFTAIFVTRALIAIWFARRRPKTIEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MQU7</accession>
    <name>A0A1M5MQU7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Threonine dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0962</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79585.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899708.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0962"/>
    <dbReference type="EnsemblBacteria" id="SHG79585">
        <property type="protein sequence ID" value="SHG79585"/>
        <property type="gene ID" value="SAMN05444003_0962"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006520">
        <property type="term" value="P:cellular amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="PLP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000634">
        <property type="entry name" value="Ser/Thr_deHydtase_PyrdxlP-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="Trypto_synt_PLP_dependent"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="SSF53686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00165">
        <property type="entry name" value="DEHYDRATASE_SER_THR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PALP" evidence="3">
        <location>
            <begin position="19"/>
            <end position="306"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG79585.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="319" mass="33290" checksum="221C077156A4F260" modified="2017-03-15" version="1">MGPTLEQIETAAERLCGVVVETPVLKLQQAKWQGLPVEADVTVKLELFQQTGSFKARGAYLGIAGLDDAAKAAGVVAASGGNHAMAVAWAANAAGVDALIAMPEATDPTRVEGCEALGARVELCADMPAAFEVMEREAAGGRFLMHPFEAEHMALGSAVLGAEYLRQAPEVEVFVIPVGGGGMISGMSRAIKLLKPDALVFGVEPVGADSMKRSFEAGEPVRLERIDTIADSLGSPLAMPYTFGVAHENVDEIVHLTDAQMVEGMRAYLDVLKIMAEPACAASLAAICGPLKDRLAGNRVGIIACGSNIGSKRFDSLVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MT72</accession>
    <name>A0A1M5MT72_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1005</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80456.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899748.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG80456">
        <property type="protein sequence ID" value="SHG80456"/>
        <property type="gene ID" value="SAMN05444003_1005"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG80456.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="118" mass="13481" checksum="FCFDBC4C226A127F" modified="2017-03-15" version="1">MIFDTGLRDEYRSFFYSELERLSAEDPRVFDEIMGRLGFPIRARDVADLDVEDLQNFSVDRDFFITNPGLTADVGTRAIGIVFRTGLEYTCEDGEREIAQQTRAGSFLFREAVPIALE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MTU9</accession>
    <name>A0A1M5MTU9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methylglutaconyl-CoA hydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1018</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80718.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899760.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1018"/>
    <dbReference type="EnsemblBacteria" id="SHG80718">
        <property type="protein sequence ID" value="SHG80718"/>
        <property type="gene ID" value="SAMN05444003_1018"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG80718.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="261" mass="27713" checksum="E5EFC667532FA07D" modified="2017-03-15" version="1">MKTLRLETDGRGVATLSLSRSEKHNAMSAEMIEDLQRAAESLAADLDVRVVVLAGDGPTFCAGGDLRWMEVMVKAAPAKRREGAIFLAKMLHTLNTLPKPVIGRCHGNAFGGGVGLLSVCDVAIGVGGKKLGLTETRLGLVPATIGPYVVARMGEAKARRVFMSSRIFSSEEAVELNLLARVVSEAQLNEAVEAEVAPYLECAPGAVANAKALARRLGPVIDDAVIEMSAQTLVDQWEAGEAVKGIEAFFAKEKAPWASMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MXY9</accession>
    <name>A0A1M5MXY9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1089</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82194.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899821.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG82194">
        <property type="protein sequence ID" value="SHG82194"/>
        <property type="gene ID" value="SAMN05444003_1089"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012725555" evidence="1">
        <location>
            <begin position="21"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG82194.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="280" mass="31303" checksum="859F1704D5166C1B" modified="2017-03-15" version="1">MIKKTLFALALVVSPLSAPAQENVARLSEFLEYLAGTDYFVPEAAVQYGFQGNSADVYADHLRKVWSDPDLRNYLAASLDPVVRWQDDGGVEFSSFEKFMAYAPFVLSGPADRGAFNLPGSMLQDYVAGYHAGFLGEAEKSLGACIEAYTVDFGDTPELLIKSALLKVVLMRNLEAKTLQAFLQAKREAARVGLTDGFEYIPMTDEETEFALIPLYRELDAMAETHPNKAGIEDYWYNDGNEPRDLCDVSVLEWSVLDRLEGEERQLVARYFLEDYTGQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N2P8</accession>
    <name>A0A1M5N2P8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Transcriptional repressor NrdR</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">nrdR</name>
        <name evidence="11" type="ORF">SAMN05444003_1151</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR-boxes.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="8">Binds 1 zinc ion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the NrdR family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83695.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899874.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1151"/>
    <dbReference type="EnsemblBacteria" id="SHG83695">
        <property type="protein sequence ID" value="SHG83695"/>
        <property type="gene ID" value="SAMN05444003_1151"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00440">
        <property type="entry name" value="NrdR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005144">
        <property type="entry name" value="ATP-cone_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003796">
        <property type="entry name" value="RNR_NrdR-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30455">
        <property type="entry name" value="PTHR30455"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03477">
        <property type="entry name" value="ATP-cone"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00244">
        <property type="entry name" value="TIGR00244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51161">
        <property type="entry name" value="ATP_CONE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 8 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 8" id="KW-0678">Repressor</keyword>
    <keyword evidence="7 8" id="KW-0804">Transcription</keyword>
    <keyword evidence="5 8" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="8" id="KW-0862">Zinc</keyword>
    <keyword evidence="3 8" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="ATP-cone" evidence="10">
        <location>
            <begin position="49"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="zinc finger region" evidence="8">
        <location>
            <begin position="3"/>
            <end position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00440"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00492"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG83695.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="155" mass="17877" checksum="8E20E148A9DFBD9F" modified="2017-03-15" version="1">MRCPFCGNVDTQVKDSRPAEDHVAIRRRRFCPACGGRFTTYERVQLRDLMVIKSNGRREDFDRDKLERSIRISLQKRPIDPDRVDQMISGIVRRLESMGETDIPSTTIGEIVMESLARIDTVGYVRFASVYKNFQAADDFDKFVSELRPDASPEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-06-02" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N5H9</accession>
    <name>A0A1M5N5H9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1194</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84692.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG84692">
        <property type="protein sequence ID" value="SHG84692"/>
        <property type="gene ID" value="SAMN05444003_1194"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="8"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="20"/>
            <end position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG84692.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="190" mass="19527" checksum="FC6E8A1B1FCCD3A2" modified="2017-03-15" version="1">MVATCAALAGCMTSTPPEDDPAPTNDPDPMPSTEPTPSTEPTPAPEGDIGSNGLPFASAQELSALPAGTIMTLSMRRFANVQGSDTARVEDAPIRIEVVEPVSGSSNGLLNVTLDDGTFQIPIVGNANDLTGADGTVYDFYEFLRGDYTGIYSVYSEADRLTPVNGQLNGEGGAVARLGNAAVCDGNVDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N7J6</accession>
    <name>A0A1M5N7J6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF4174 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1215</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85159.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899928.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1215"/>
    <dbReference type="EnsemblBacteria" id="SHG85159">
        <property type="protein sequence ID" value="SHG85159"/>
        <property type="gene ID" value="SAMN05444003_1215"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025232">
        <property type="entry name" value="DUF4174"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13778">
        <property type="entry name" value="DUF4174"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013042107" description="DUF4174 domain-containing protein" evidence="2">
        <location>
            <begin position="20"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4174" evidence="3">
        <location>
            <begin position="42"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13778"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG85159.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="153" mass="17617" checksum="9F8D617E3494DA3E" modified="2017-03-15" version="1">MKVLFAMIGAALLAGPAAAQESLVDRWNEDRTQVFDASEVDLDELRWIARPIIVFGESEFEPQFRRQLDLLISEADELATRDVILITDTDPDVRSDLRTRFRPRAFMLAIVGKDGQIKLRKPAPWDVREISRSIDKMPLRQQEIRDRRGVVTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N9W6</accession>
    <name>A0A1M5N9W6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized conserved protein YkwD, contains CAP (CSP/antigen 5/PR1) domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1268</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86298.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1268"/>
    <dbReference type="EnsemblBacteria" id="SHG86298">
        <property type="protein sequence ID" value="SHG86298"/>
        <property type="gene ID" value="SAMN05444003_1268"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.33.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014044">
        <property type="entry name" value="CAP_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035940">
        <property type="entry name" value="CAP_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00188">
        <property type="entry name" value="CAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55797">
        <property type="entry name" value="SSF55797"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009912547" evidence="1">
        <location>
            <begin position="27"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="domain" description="SCP" evidence="2">
        <location>
            <begin position="47"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00188"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG86298.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="163" mass="17233" checksum="3A46C5C2B8A1EBA8" modified="2017-03-15" version="1">MGLPMNRFVLMIAAGLLATVGTQASASRSCTTPDNVNALASEIARGVNASRAANGQSQVSFNRKLGQAAMAHACDMASNDFFGHRGTDGSNSSARVRAAGYNHCLVGENLAWGYPRSEQIISGWMNSAGHRNIMLHPRIQEFGIGITMGPKGPNWVLVVAKSC</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NJ47</accession>
    <name>A0A1M5NJ47_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NADP-dependent 3-hydroxy acid dehydrogenase YdfG</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1450</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89586.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900134.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1450"/>
    <dbReference type="EnsemblBacteria" id="SHG89586">
        <property type="protein sequence ID" value="SHG89586"/>
        <property type="gene ID" value="SAMN05444003_1450"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG89586.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="242" mass="25854" checksum="1BEA80371ACCF710" modified="2017-03-15" version="1">MKTIMVTGASGGIGRAVAETFLAEGWIVGLMARREAALQEVAQGRKNAVVLTGDVTKETDVEAAFEALIAKTNHLDVLFNNAGIFTSAAPVDEISLDDWQSAVDVNLTGMFLAARAAFRQMRRQDPQGGRIINNGSISAHVPREGSITYTATKHGVTGLTRTISLDGRPFNIACGQIDIGNAETDMLRELARRAVENGDAPPPMMDVQLVADAVLSMANLPLNANVQFQTLMATQMPYIGRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NJS1</accession>
    <name>A0A1M5NJS1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1459</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900141.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG89771">
        <property type="protein sequence ID" value="SHG89771"/>
        <property type="gene ID" value="SAMN05444003_1459"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013042118" evidence="1">
        <location>
            <begin position="20"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG89771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="144" mass="15399" checksum="D3E3886945DB7289" modified="2017-03-15" version="1">MKKFCFGCVAALCGTAAFADSESTILAEQPFTSTPWANGDYYTVTLELDGCMLSKTVTEFDGDDVSEDSLRIDIDLAQVDMARLEIVADAVTLWGANGYEVMCTDIVGEDCVVPNRPGEQISVPVSVGADEYLAAFADKVSSCQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NNF8</accession>
    <name>A0A1M5NNF8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">2-haloacid dehalogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1511</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900185.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1511"/>
    <dbReference type="EnsemblBacteria" id="SHG90975">
        <property type="protein sequence ID" value="SHG90975"/>
        <property type="gene ID" value="SAMN05444003_1511"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006439">
        <property type="entry name" value="HAD-SF_hydro_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041492">
        <property type="entry name" value="HAD_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13419">
        <property type="entry name" value="HAD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01509">
        <property type="entry name" value="HAD-SF-IA-v3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG90975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="197" mass="21498" checksum="9C8AB3992FADFA10" modified="2017-03-15" version="1">MKHVVFDIGAVLVEWDPALAWVDDLGQSETNAFLERINFDKLNLACDAGATFNEAASLLDDSDDAALLRQYVERYSQTVPNKIQGTWDILNALKAKDVRVFAITNWSVETWPQGCKAHPELAEVFEFTVVSGQVGMIKPSVEIFSYFCVEAGVDAADCIFTDDGLHNCLGAKAAGMNAIHFTGPDALEAGLKQRGLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NNM3</accession>
    <name>A0A1M5NNM3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycerophosphoryl diester phosphodiesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1517</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91120.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900191.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1517"/>
    <dbReference type="EnsemblBacteria" id="SHG91120">
        <property type="protein sequence ID" value="SHG91120"/>
        <property type="gene ID" value="SAMN05444003_1517"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008081">
        <property type="term" value="F:phosphoric diester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030395">
        <property type="entry name" value="GP_PDE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017946">
        <property type="entry name" value="PLC-like_Pdiesterase_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03009">
        <property type="entry name" value="GDPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51695">
        <property type="entry name" value="SSF51695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51704">
        <property type="entry name" value="GP_PDE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013200497" evidence="1">
        <location>
            <begin position="20"/>
            <end position="404"/>
        </location>
    </feature>
    <feature type="domain" description="GP-PDE" evidence="2">
        <location>
            <begin position="59"/>
            <end position="381"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG91120.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="404" mass="44209" checksum="97E18CE6D54B2D7F" modified="2017-03-15" version="1">MLRISTIAALAVSAAPVLAQSVDSVEYGPRPYYLIDRMADSPLKEKLMSCAGQEATPSRFSIGHRGAPMQFPEHTAESNLAAARMGAGILECDVTFTEDLELVCRHAQNDLHTTTNILATPLADTCVTPFAPADGDTDAAAECRTSEITLAEYRTLTPKMDAADRSATTVEAYLGGTADWRTDLYSVEPATIMSHAESIELFKSLGAKFTPELKSPSVEMPFNGFSQEDYAQKLVDEYKAAGVPASDVWLQSFNLEDILYWIEAEPDFGAQAVYLMDEYNIDGYSPMDPATWPNTMEELKAMGVNYIAPPTWMLVTLDREEIVPSELAIQAKAAGLNIITWTIERSGPLVRGGGWYYQSIADITDNDGVMYKYIDALAQDVGVVGIFSDWPATVTYYANCMGLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-06-02" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NP76</accession>
    <name>A0A1M5NP76_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1512</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90999.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG90999">
        <property type="protein sequence ID" value="SHG90999"/>
        <property type="gene ID" value="SAMN05444003_1512"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="80"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="81"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG90999.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="192" mass="20863" checksum="50F9E6625E29D317" modified="2017-03-15" version="1">MKVAAKKDFLRLESRVPETKKRGRSIASVSAISFTGPFSTGLRGVAHRTSFASVPFDPDIDPILSFSESATPAVVFEPKKKANTDGPKNFHHRVSKTGDQANRNAKGPNAFPKSKIVRASARHVKSPYVVENSPIRGVLFCGKGANLSHPSASYEPAKSNTHHVWPADSTTHVTELRQRSNVAALQQRGPIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NSV1</accession>
    <name>A0A1M5NSV1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">H-type lectin domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1581</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG92694.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900249.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1581"/>
    <dbReference type="EnsemblBacteria" id="SHG92694">
        <property type="protein sequence ID" value="SHG92694"/>
        <property type="gene ID" value="SAMN05444003_1581"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007155">
        <property type="term" value="P:cell adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.2080">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037221">
        <property type="entry name" value="H-type_lectin_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019019">
        <property type="entry name" value="H-type_lectin_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09458">
        <property type="entry name" value="H_lectin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141086">
        <property type="entry name" value="SSF141086"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0430">Lectin</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="H_lectin" evidence="1">
        <location>
            <begin position="39"/>
            <end position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG92694.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="115" mass="12815" checksum="E119D911D506C52F" modified="2017-03-15" version="1">MRKLDSHKLGIEQGETVLFSDFEDGGPMWSGDGQRDVSVPIVFSESFDMPPSVMVTLALCDMSNEAYMRMDLRAKNVTTRGFDIAFATWGDTKFARVRVAWQAIGAVSSEDAWDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NUF5</accession>
    <name>A0A1M5NUF5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Autotransporter secretion outer membrane protein TamA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1598</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93127.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1598"/>
    <dbReference type="EnsemblBacteria" id="SHG93127">
        <property type="protein sequence ID" value="SHG93127"/>
        <property type="gene ID" value="SAMN05444003_1598"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000184">
        <property type="entry name" value="Bac_surfAg_D15"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010827">
        <property type="entry name" value="BamA/TamA_POTRA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039910">
        <property type="entry name" value="D15-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12815">
        <property type="entry name" value="PTHR12815"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01103">
        <property type="entry name" value="Omp85"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07244">
        <property type="entry name" value="POTRA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1134">Transmembrane beta strand</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012047804" evidence="4">
        <location>
            <begin position="21"/>
            <end position="593"/>
        </location>
    </feature>
    <feature type="domain" description="POTRA" evidence="6">
        <location>
            <begin position="197"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="domain" description="Omp85" evidence="5">
        <location>
            <begin position="296"/>
            <end position="593"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004442"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01103"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF07244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG93127.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="593" mass="63197" checksum="DC94887C9879343F" modified="2017-03-15" version="1">MKRFGLLIGLMTIWASPASSQDVSLFVNSEDEALERTLRQDSLTIETAGLEEAISQDIVAAALADYRRLLTVLYAYGYYGGTISILIDGREAATLEPLFAPPQIAQVNISVNPGPLFAFGSINYSPLAEGTELPKDLATDEPALSGLIQDGAQAGVNEWRNRGHAKAVVTNQAIVANHIDTQLNVAVAISPGPVLTFGEFTVAGNENVRTDAIERIAGFPTGGIYSPKDIDTVTQRLRRAGAFDGVALIEAEEIGPNDTLAVTAQVRESKPRRFGFSLEFSNVEGLHVTSFWMHRNAFGGAERFRVEGEIAGIGGFTGGVDYRLATSLSVPAIYGPDTTLLATANVSREDEPDYLLDRLRFGVGATRLIGDDIIGQAGFAILRAREATDIETRSYTLLTLPFGLELDRRDNEKDAKSGYFVDTLATPFIGLQGGGEGGRIVLDARGYRSIGSDDQLTLAGRLQVGSLIGAEIENTPADFLFYSGGGGTVRGQPYNDLGLTEGDVTTGGRSFLGAQLEARYAISDNLGVVGFWDYGYVGSSSTPGQSGDSHSGLGIGVRYNTFIGPLRLDVATPADGDDAFRGVEFYIGIGQAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NWB1</accession>
    <name>A0A1M5NWB1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Glutamate--tRNA ligase</fullName>
            <ecNumber evidence="7">6.1.1.17</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Glutamyl-tRNA synthetase</fullName>
            <shortName evidence="7">GluRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">gltX</name>
        <name evidence="11" type="ORF">SAMN05444003_1627</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>ATP + L-glutamate + tRNA(Glu) = AMP + diphosphate + L-glutamyl-tRNA(Glu)</text>
            <dbReference type="Rhea" id="RHEA:23540"/>
            <dbReference type="Rhea" id="RHEA-COMP:9663"/>
            <dbReference type="Rhea" id="RHEA-COMP:9680"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78520"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.17"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="7">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.17" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93821.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900479.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1627"/>
    <dbReference type="EnsemblBacteria" id="SHG93821">
        <property type="protein sequence ID" value="SHG93821"/>
        <property type="gene ID" value="SAMN05444003_1627"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004818">
        <property type="term" value="F:glutamate-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006424">
        <property type="term" value="P:glutamyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.350">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00022">
        <property type="entry name" value="Glu_tRNA_synth_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045462">
        <property type="entry name" value="aa-tRNA-synth_I_cd-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020751">
        <property type="entry name" value="aa-tRNA-synth_I_codon-bd_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001412">
        <property type="entry name" value="aa-tRNA-synth_I_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008925">
        <property type="entry name" value="aa_tRNA-synth_I_cd-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004527">
        <property type="entry name" value="Glu-tRNA-ligase_bac/mito"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000924">
        <property type="entry name" value="Glu/Gln-tRNA-synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020058">
        <property type="entry name" value="Glu/Gln-tRNA-synth_Ib_cat-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19269">
        <property type="entry name" value="Anticodon_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00749">
        <property type="entry name" value="tRNA-synt_1c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00987">
        <property type="entry name" value="TRNASYNTHGLU"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48163">
        <property type="entry name" value="SSF48163"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00464">
        <property type="entry name" value="gltX_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00178">
        <property type="entry name" value="AA_TRNA_LIGASE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7 8" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="4 7 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 7 8" id="KW-0436">Ligase</keyword>
    <keyword evidence="3 7 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 7 8" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="tRNA-synt_1c" evidence="9">
        <location>
            <begin position="3"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="domain" description="Anticodon_2" evidence="10">
        <location>
            <begin position="339"/>
            <end position="434"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region" evidence="7">
        <location>
            <begin position="8"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="7">
        <location>
            <begin position="239"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="242"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00022"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU363037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF19269"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG93821.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="440" mass="48630" checksum="8DB87052835319A5" modified="2017-03-15" version="1">MTTTRFAPSPTGWLHIGNLRAALFNYAIARQAGGEFILRIDDTDPERSKEEYVEGIKEDLTWLGLTWDRIERQSERLDRYAVAKDKLIEMGRLYECFETPTELDLKRKKQLNMGKPPVYDRAALDLTEAEKEAFRAEGRKGHWRFKLDHARIEWTDGILGDISIDASSVSDPVLIRGDGQVLYTLASVVDDTEMGITDVVRGSDHVTNTATQIQMIESLGGAVPRFAHHSLLTGPQGEALSKRLGTLALRDLRKNGLAPEAILSLMARLGSSDPVELRANVQEVVDGFDLSKFGSAPTKFDADDLGPLTARHLATLSAADVAEALAGANVPAEVQEPFWAVVKENISTLGDLPEWWALFRDGATALVDDEDKDFIATAFDMLGEPPYTDQTWSEWTAAVKEATGRKGKGLFMPLRKAVTGRQRGPEMADVMPLLQVKPRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NWH0</accession>
    <name>A0A1M5NWH0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1632</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93926.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900294.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1632"/>
    <dbReference type="EnsemblBacteria" id="SHG93926">
        <property type="protein sequence ID" value="SHG93926"/>
        <property type="gene ID" value="SAMN05444003_1632"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG93926.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="221" mass="23083" checksum="FB0D307987AFB2C1" modified="2017-03-15" version="1">MKRALCIGASGGIGQALVTELRQRGFEVDGLSRKADGLDITDPVSVEAMLSKLSGPYDVVFVATGVLASNGARPEKALSAITEEQMAEVFAVNAIGPALILGRLGRLLRKDGAPRIGVLSARVGSIGDNRIGGWHSYRASKAAVNQIVRGAAVEFARTHKGSVCVALHPGTVETPFTANYAGRHKTMPASEAASALVDVLLALSPEQSGGFFDYAGKEVPW</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NX85</accession>
    <name>A0A1M5NX85_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Capsular polysaccharide transport system ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1643</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG94176.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900304.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1643"/>
    <dbReference type="EnsemblBacteria" id="SHG94176">
        <property type="protein sequence ID" value="SHG94176"/>
        <property type="gene ID" value="SAMN05444003_1643"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="2"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="38"/>
            <end position="45"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG94176.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="219" mass="24858" checksum="66DADB7D0A17E684" modified="2017-03-15" version="1">MLEFENVSKSFWTGTQRKVILDRVSFRVELGNSLGILAPNGTGKTTLINMMAGLEKPDEGNIYRNCKISFPLGFMGGVINKLTGMENSRYIARLYGLDPDYVEAFCRWLCGIEEYFDMPVGTYSQGMRARLTFALLLALDFDIYLIDEGMPQTTDVEFNKKAGDLLRERLETTTIIIVSHQPATLERFAKKAAVLKDGYLHMFDTLEEAKQLYDYQTQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PKC0</accession>
    <name>A0A1M5PKC0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1692</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02195.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900509.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH02195">
        <property type="protein sequence ID" value="SHH02195"/>
        <property type="gene ID" value="SAMN05444003_1692"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH02195.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="185" mass="20753" checksum="45FB282784B41E6B" modified="2017-03-15" version="1">MTVSVNECRRAWRATDPLLDVFCSDEHALVAFVKSASKDDLTVFTTVHGLKAELVLFDAILSQPELDRSTALAIFHACNPAFYEGELSNGTAEADLALDEEDAIVITILDKAHQRITNGSPMTAIFSAPCLNEWKKFPHVSPLYFKRWPLDQTALSETEGLTPEPAVDYDDTKIRLSFDVWKRRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PKE7</accession>
    <name>A0A1M5PKE7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Tryptophan synthase alpha chain</fullName>
            <ecNumber evidence="7">4.2.1.20</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">trpA</name>
        <name evidence="9" type="ORF">SAMN05444003_1666</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate + L-serine = D-glyceraldehyde 3-phosphate + H2O + L-tryptophan</text>
            <dbReference type="Rhea" id="RHEA:10532"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:57912"/>
            <dbReference type="ChEBI" id="CHEBI:58866"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="EC" id="4.2.1.20"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 7">Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 5/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Tetramer of two alpha and two beta chains.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7 8">Belongs to the TrpA family.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.20" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH01683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900489.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1666"/>
    <dbReference type="EnsemblBacteria" id="SHH01683">
        <property type="protein sequence ID" value="SHH01683"/>
        <property type="gene ID" value="SAMN05444003_1666"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00035">
        <property type="reaction ID" value="UER00044"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004834">
        <property type="term" value="F:tryptophan synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04724">
        <property type="entry name" value="Tryptophan_synthase_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00131">
        <property type="entry name" value="Trp_synth_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018204">
        <property type="entry name" value="Trp_synthase_alpha_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002028">
        <property type="entry name" value="Trp_synthase_suA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43406">
        <property type="entry name" value="PTHR43406"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00290">
        <property type="entry name" value="Trp_syntA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="SSF51366"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00262">
        <property type="entry name" value="trpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00167">
        <property type="entry name" value="TRP_SYNTHASE_ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="5 7" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="6 7" id="KW-0456">Lyase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0822">Tryptophan biosynthesis</keyword>
    <feature type="active site" description="Proton acceptor" evidence="7">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="7">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000003"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022822"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00131"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003662"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH01683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="263" mass="27534" checksum="28E3C523625B74C0" modified="2017-03-15" version="1">MSRIDAKFAELRAAGKKAFVAYVMAGDTDYDTGFEVMQGLPAAGVDIIELGMPFTDPMADGSTIQLAGQRALEGGMTLEMTLQYARDFRKSDDTTPIVMMGYYNPIYSRGVDAFLTDAKEAGIDGLIVVDLPPEEDDELCIPAQAAGINFIRLATPTTDDKRLPTVLQNTSGFVYYVSMTGITGTADVQSDEVAPEVARIKAATNLPVIVGFGIKTPADAKAVASVSDGAVVGSAIVAKIGAGEPVPDVLGFVGELADGAHSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PN77</accession>
    <name>A0A1M5PN77_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, IclR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1746</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03255.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900869.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1746"/>
    <dbReference type="EnsemblBacteria" id="SHH03255">
        <property type="protein sequence ID" value="SHH03255"/>
        <property type="gene ID" value="SAMN05444003_1746"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014757">
        <property type="entry name" value="Tscrpt_reg_IclR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005471">
        <property type="entry name" value="Tscrpt_reg_IclR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09339">
        <property type="entry name" value="HTH_IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01614">
        <property type="entry name" value="IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00346">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51077">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51078">
        <property type="entry name" value="ICLR_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH iclR-type" evidence="3">
        <location>
            <begin position="7"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="domain" description="IclR-ED" evidence="4">
        <location>
            <begin position="70"/>
            <end position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH03255.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="267" mass="29384" checksum="8293F9C7C907BCF3" modified="2017-03-15" version="1">MSRGSGDGTVGKALEVLEEVANFGRPVRFNDVLAQSRFPKPTLYRLIQTLTNQGMLDFDPERSTYAPGARLVRLAHAAWQQSSLAQVASPYLQELSEQTGETVHLAQLDSAQVLYLDKRNAKQPVEMYSQAGKVGPAYCTGVGKAMMAFLPDAEAEKVIGQQSFHIFTEHTLANAEALKEELAEIREHGYGFDREEHEPGIICVAMPILTERGRLIGAMSVTSTTDRTNLASLEKNVPLLKTAADAISREAQRWSFPDHQKQQATGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PNI7</accession>
    <name>A0A1M5PNI7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Carbohydrate ABC transporter membrane protein 1, CUT1 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1748</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03304.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900555.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1748"/>
    <dbReference type="EnsemblBacteria" id="SHH03304">
        <property type="protein sequence ID" value="SHH03304"/>
        <property type="gene ID" value="SAMN05444003_1748"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="20"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="91"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="124"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="218"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="281"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="86"/>
            <end position="303"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH03304.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="313" mass="35625" checksum="948CBCB683F6179B" modified="2017-03-15" version="1">MATASTNAPPQRGWYKRNEIAITPWLFLTPAVLFFSVYVIIPIGQSFWISFHEWDGLGEKIFIGTDNYERLLGLGDQRMDRKFETSFWNNIRWLVLYLLAIPMGLFIALLLNQTVRGIRLYKSLFFFPFVISQVVVGLVFSWFYLPNDGLFDVMTGWFGIDIRGGVLGNPNTATYGIIAAGLWPQTAYCMILYLTGLNAVDPEQVEAGRLDGARGWKMLWYVIIPQLKPATFIAFVVTIIGALRSFDFIAVMTNGGPFGSTRVLSFYMFEESLSEFGFRMGYGAAIAVVLFFIMLGFIVYFLYSMWRDEQAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PRV7</accession>
    <name>A0A1M5PRV7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Sirohydrochlorin cobaltochelatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1805</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04421.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900603.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1805"/>
    <dbReference type="EnsemblBacteria" id="SHH04421">
        <property type="protein sequence ID" value="SHH04421"/>
        <property type="gene ID" value="SAMN05444003_1805"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002762">
        <property type="entry name" value="CbiX-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01903">
        <property type="entry name" value="CbiX"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="371"/>
            <end position="417"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="399"/>
            <end position="417"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH04421.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="417" mass="45741" checksum="3EE6A391F4B2F682" modified="2017-03-15" version="1">MKTGVLICGHGSRSQSAVDEFATLAEKLPTYLPEDWQTDYGYLEFANPVIRDGLDKLRTAGCERILAVPGMLFAAMHAKNDIPTVLNTYAAKHGMEVSYGRELGVDPKMVAAAAGRIEEAIEQANVEQGDVPLTETCLVVIGRGASDPDANSNVSKIARLLQEGMGFGWCEVGYSGVTFPLVEPCLQHVARLTYKRVVVFPYFLFSGILIDRIYGFTDQVAAEHPDIHFVKAGYLGDHPKVLETFAERILEQDSATPPPNCGTCQYRTQVLAIEGQDVLQITPEQRIALAAEKGKGHPAFGDVPPPTCVLCKYRTQVLGFEAEVGAVQESHHHHVEGQGANAPGSNVEDCAHCDTFCTGVCRLEMAHDHHHHHHHHGHDHDQSHDHGHHHHDHDHHHAPYPHAKHPLGPESARKAKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PUJ5</accession>
    <name>A0A1M5PUJ5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1867</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05667.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900658.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1867"/>
    <dbReference type="EnsemblBacteria" id="SHH05667">
        <property type="protein sequence ID" value="SHH05667"/>
        <property type="gene ID" value="SAMN05444003_1867"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="149"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH05667.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="173" mass="18051" checksum="AD48E8C41543009C" modified="2017-03-15" version="1">MTQTIPDTDHGKIRVFSVASPADGLLEIKIEALVATFGSAPLNTDFVDVIDLDVLEEMSLLDYLSEGYNVEPDDADVAALTALEGVVVLIMSRAHEGAEITLVPAEGVRHVTTLGRGARMTVAASLESEAAQGVVTDGFGKAPKSDARIGGIVAMVALLVMFALVALMVWVGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PV59</accession>
    <name>A0A1M5PV59_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">SsrA-binding protein</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Small protein B</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">smpB</name>
        <name evidence="4" type="ORF">SAMN05444003_1841</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA; the nascent peptide is terminated with the 'tag peptide' encoded by the tmRNA and targeted for degradation. The ribosome is freed to recommence translation, which seems to be the essential function of trans-translation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="2">The tmRNA-SmpB complex associates with stalled 70S ribosomes.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the SmpB family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05163.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900635.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1841"/>
    <dbReference type="EnsemblBacteria" id="SHH05163">
        <property type="protein sequence ID" value="SHH05163"/>
        <property type="gene ID" value="SAMN05444003_1841"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070929">
        <property type="term" value="P:trans-translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd09294">
        <property type="entry name" value="SmpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00023">
        <property type="entry name" value="SmpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023620">
        <property type="entry name" value="SmpB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000037">
        <property type="entry name" value="SsrA-bd_prot"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30308">
        <property type="entry name" value="PTHR30308"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01668">
        <property type="entry name" value="SmpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74982">
        <property type="entry name" value="SSF74982"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00086">
        <property type="entry name" value="smpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0694">RNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="131"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="132"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH05163.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="157" mass="18333" checksum="02D27D0BAE08A9FE" modified="2017-03-15" version="1">MAKKPENKNYKVLAENRRARYDYAIEEDLEVGIVLYGSEVKSLRLGQSNIADSYASVDDGELWLTNAYIAPYDRAMFSHEERRKRKLLCSKREVAKLWNATKREGMTLVPLVMYFNDRGLVKLKIATAKGKKNHDKRASDAKRDWNRQKQRLLRHDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PV69</accession>
    <name>A0A1M5PV69_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Glycerol-3-phosphate acyltransferase</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Acyl-PO4 G3P acyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">Acyl-phosphate--glycerol-3-phosphate acyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">G3P acyltransferase</fullName>
            <shortName evidence="10">GPAT</shortName>
            <ecNumber evidence="10">2.3.1.275</ecNumber>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">Lysophosphatidic acid synthase</fullName>
            <shortName evidence="10">LPA synthase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">plsY</name>
        <name evidence="11" type="ORF">SAMN05444003_1869</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>an acyl phosphate + sn-glycerol 3-phosphate = a 1-acyl-sn-glycero-3-phosphate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:34075"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57597"/>
            <dbReference type="ChEBI" id="CHEBI:57970"/>
            <dbReference type="ChEBI" id="CHEBI:59918"/>
            <dbReference type="EC" id="2.3.1.275"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="10">Lipid metabolism; phospholipid metabolism.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Probably interacts with PlsX.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cell membrane</location>
            <topology evidence="10">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the PlsY family.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.275" evidence="10"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05704.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900660.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1869"/>
    <dbReference type="EnsemblBacteria" id="SHH05704">
        <property type="protein sequence ID" value="SHH05704"/>
        <property type="gene ID" value="SAMN05444003_1869"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00085"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043772">
        <property type="term" value="F:acyl-phosphate glycerol-3-phosphate acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008654">
        <property type="term" value="P:phospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01043">
        <property type="entry name" value="PlsY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003811">
        <property type="entry name" value="G3P_acylTferase_PlsY"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30309">
        <property type="entry name" value="PTHR30309"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02660">
        <property type="entry name" value="G3P_acyltransf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01207">
        <property type="entry name" value="G3P_acyltransf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00023">
        <property type="entry name" value="TIGR00023"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="1 10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="2 10" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="6 10" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="7 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="8 10" id="KW-0594">Phospholipid biosynthesis</keyword>
    <keyword evidence="9 10" id="KW-1208">Phospholipid metabolism</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 10 11" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="60"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="88"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="114"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="161"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH05704.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="201" mass="21197" checksum="C9453CA8B931322D" modified="2017-03-15" version="1">MPFIESTPLVLALWAVIGYLLGSIPSGIILARVMGLGNLREIGSGNIGATNVLRTGSKKAAALTLLFDAGKAIVAILLARFFAGDDAAQVAALAAFIGHCFPVWLGFKGGKGVATYFGIILVIAPISGLVACAIWLTTAAISRYSSLAALLTAGWTPLVMLYVQEGYAFYLGVTLGGLIYVRHWQNIQRLKRGEETKIGAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PVX6</accession>
    <name>A0A1M5PVX6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 11">Ribosomal RNA small subunit methyltransferase E</fullName>
            <ecNumber evidence="4 11">2.1.1.193</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">SAMN05444003_1875</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10 11">Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>S-adenosyl-L-methionine + uridine(1498) in 16S rRNA = H(+) + N(3)-methyluridine(1498) in 16S rRNA + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42920"/>
            <dbReference type="Rhea" id="RHEA-COMP:10283"/>
            <dbReference type="Rhea" id="RHEA-COMP:10284"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:74502"/>
            <dbReference type="EC" id="2.1.1.193"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 11">Belongs to the RNA methyltransferase RsmE family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.193" evidence="4 11"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05810.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900664.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1875"/>
    <dbReference type="EnsemblBacteria" id="SHH05810">
        <property type="protein sequence ID" value="SHH05810"/>
        <property type="gene ID" value="SAMN05444003_1875"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006364">
        <property type="term" value="P:rRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029028">
        <property type="entry name" value="Alpha/beta_knot_MTases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015947">
        <property type="entry name" value="PUA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006700">
        <property type="entry name" value="rRNA_ssu_MeTrfase-E"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029026">
        <property type="entry name" value="tRNA_m1G_MTases_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30027">
        <property type="entry name" value="PTHR30027"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04452">
        <property type="entry name" value="Methyltrans_RNA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015601">
        <property type="entry name" value="MTase_slr0722"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75217">
        <property type="entry name" value="SSF75217"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88697">
        <property type="entry name" value="SSF88697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00046">
        <property type="entry name" value="TIGR00046"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 11 12" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 11" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="9 11" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="8 11 12" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000792"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012328"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013673"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00025699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRNR" id="PIRNR015601"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHH05810.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="241" mass="26695" checksum="0A146FD718BD6F5C" modified="2017-03-15" version="1">MASKVRLYVDHPLGEGQTVPLGRDQANYLFAVMRLPVGTVLSLINGRDGEWDAEVVEANKRAGVLRCLAQTRPLQLPPDVWLLFAPIKKERTAFIVEKATELGAAKIIPVQTDFTQSANRARQDKLQAHAVEATEQCGGTFVPEVEPLRTLANMLADWPSDRHLLFCDETLLEDPHEMADLPDGPWAIVIGPEGGFSNTEREALRNHRQSHPISLGPRILRADTAAVAALTLWQREKGDWA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PZB3</accession>
    <name>A0A1M5PZB3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Predicted arabinose efflux permease, MFS family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1940</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07022.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1940"/>
    <dbReference type="EnsemblBacteria" id="SHH07022">
        <property type="protein sequence ID" value="SHH07022"/>
        <property type="gene ID" value="SAMN05444003_1940"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="32"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="102"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="128"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="161"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="186"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="240"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="275"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="317"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="344"/>
            <end position="369"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="376"/>
            <end position="396"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="408"/>
            <end position="427"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="35"/>
            <end position="432"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH07022.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="436" mass="46023" checksum="95FC329E43E39768" modified="2017-03-15" version="1">MGITAITIFDVRSIDNAVFRRPTDGMTHDSRLISPVLIAGCIVIMTGFAIRASFGVFQIPIAEEFGWARAEFSMAIAIQNLAWGIGQPIFGAIAEKIGDRKAIVLGALCYAAGLLLSAGATTPTEHQIYEVLVGFGIAGTGFGVILAVVGRASSDKNRSMSLAIATAAGSAGQVIGAPIAEILLGYMTWQMVFVTFAAAILAVLLVLPMMKSPEAATKAELEESMGEILTRAFKDPSYTLIFLGFFSCGYQLAFITAHFPAFVTEVCGPIAAGGVLAGLGITTTSALGAVAISLIGLANIAGTLLAGWAGNRYSKKYLLAGIYTGRTLVALAFILTPMTPTTVILFSIFMGMLWLATVPLTSGLVAHLYGLRYMGTLYGIVFFSHQLGSFMGVWLGGRLYDIYGSYDAVWWVGIAVGAFSAIVHLPIKENRQPLAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PZE0</accession>
    <name>A0A1M5PZE0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Electron transfer flavoprotein-ubiquinone oxidoreductase</fullName>
            <shortName evidence="9">ETF-QO</shortName>
            <ecNumber evidence="9">1.5.5.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_1950</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Accepts electrons from ETF and reduces ubiquinone.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>a ubiquinone + reduced [electron-transfer flavoprotein] = a ubiquinol + H(+) + oxidized [electron-transfer flavoprotein]</text>
            <dbReference type="Rhea" id="RHEA:24052"/>
            <dbReference type="Rhea" id="RHEA-COMP:9565"/>
            <dbReference type="Rhea" id="RHEA-COMP:9566"/>
            <dbReference type="Rhea" id="RHEA-COMP:10685"/>
            <dbReference type="Rhea" id="RHEA-COMP:10686"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16389"/>
            <dbReference type="ChEBI" id="CHEBI:17976"/>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
            <dbReference type="ChEBI" id="CHEBI:58307"/>
            <dbReference type="EC" id="1.5.5.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 9">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="9">Binds 1 [4Fe-4S] cluster.</text>
    </comment>
    <dbReference type="EC" id="1.5.5.1" evidence="9"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07235.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900726.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1950"/>
    <dbReference type="EnsemblBacteria" id="SHH07235">
        <property type="protein sequence ID" value="SHH07235"/>
        <property type="gene ID" value="SAMN05444003_1950"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004174">
        <property type="term" value="F:electron-transferring-flavoprotein dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040156">
        <property type="entry name" value="ETF-QO"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10617">
        <property type="entry name" value="PTHR10617"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 9" id="KW-0249">Electron transport</keyword>
    <keyword evidence="4 9" id="KW-0274">FAD</keyword>
    <keyword evidence="3 9" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="9" id="KW-0408">Iron</keyword>
    <keyword evidence="7 9" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 9" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 9" id="KW-0813">Transport</keyword>
    <keyword evidence="8 9" id="KW-0830">Ubiquinone</keyword>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="423"/>
            <end position="444"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="10">
        <location>
            <begin position="428"/>
            <end position="442"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU366068"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH07235.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="550" mass="59705" checksum="7E85C1DB7F62B261" modified="2017-03-15" version="1">MSEIEREEMDCDVVIVGAGPAGLSAAIRLKQLDADLNVVVLEKGSEVGAHILSGAVLDPAGLTRLIPDWKEKGAPLNVPVKEDNFYMLGEAGSLRLPNFLLPPLMNNHGNYIVSMGNVCRWMAEQAEEMGVEIFPGMACSELVFGDNGEVKGVVAGEFGKNPDGTPGPSYEPGMILNGKYVMLSEGVRGSLSKEVIAKYNLDAKCDVPKFGIGMKEIWEVDPEKHNEGEVTHTLGWPIGFKNGGGSFIYHLDNNQVYVGYIVDLNYKNPHIFPYMEFQRLKHHPKIAELLKGGKRVAYGARAVTKGGFQSIPEVAFPGGVLLGCSAGLVNLPRIKGNHNAMHSGIEAAEAAHAAIQEGREGDTLTAYDEALKTGPVGKDLKIVRNVAPLNAKYGPIGGMALGGFDMWFQTIFKGSLFGTLKHGKTDAQSTEPASKHKPIDYPKPDGTLSFDRLTNVSFSFTNHEESQPAHLKLTDDKIPVDVNLAKYAGPSARYCPAGVYEFIEEEGKDTRFQINFQNCVHCKTCDIKDPSQNITWTVPQGGDGPNYPNM</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PZS5</accession>
    <name>A0A1M5PZS5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Dihydrofolate synthase/folylpolyglutamate synthase</fullName>
            <ecNumber evidence="6">6.3.2.12</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="17">Folylpoly-gamma-glutamate synthetase-dihydrofolate synthetase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="16">Folylpolyglutamate synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="20" type="ORF">SAMN05444003_1938</name>
    </gene>
    <organism evidence="20 21">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="20 21" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20 21">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Functions in two distinct reactions of the de novo folate biosynthetic pathway. Catalyzes the addition of a glutamate residue to dihydropteroate (7,8-dihydropteroate or H2Pte) to form dihydrofolate (7,8-dihydrofolate monoglutamate or H2Pte-Glu). Also catalyzes successive additions of L-glutamate to tetrahydrofolate or 10-formyltetrahydrofolate or 5,10-methylenetetrahydrofolate, leading to folylpolyglutamate derivatives.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>(6R)-5,10-methylenetetrahydrofolyl-(gamma-L-Glu)(n) + ATP + L-glutamate = (6R)-5,10-methylenetetrahydrofolyl-(gamma-L-Glu)(n+1) + ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:51912"/>
            <dbReference type="Rhea" id="RHEA-COMP:13257"/>
            <dbReference type="Rhea" id="RHEA-COMP:13258"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:136572"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.17"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>10-formyltetrahydrofolyl-(gamma-L-Glu)(n) + ATP + L-glutamate = 10-formyltetrahydrofolyl-(gamma-L-Glu)(n+1) + ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:51904"/>
            <dbReference type="Rhea" id="RHEA-COMP:13088"/>
            <dbReference type="Rhea" id="RHEA-COMP:14300"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:134413"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.17"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>7,8-dihydropteroate + ATP + L-glutamate = 7,8-dihydrofolate + ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:23584"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17839"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57451"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.12"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="5">Cofactor biosynthesis; tetrahydrofolate biosynthesis; 7,8-dihydrofolate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate and 4-aminobenzoate: step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="18">Belongs to the folylpolyglutamate synthase family.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.12" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06989.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900716.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1938"/>
    <dbReference type="EnsemblBacteria" id="SHH06989">
        <property type="protein sequence ID" value="SHH06989"/>
        <property type="gene ID" value="SAMN05444003_1938"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00077">
        <property type="reaction ID" value="UER00157"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008841">
        <property type="term" value="F:dihydrofolate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004326">
        <property type="term" value="F:tetrahydrofolylpolyglutamate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046656">
        <property type="term" value="P:folic acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046654">
        <property type="term" value="P:tetrahydrofolate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001645">
        <property type="entry name" value="Folylpolyglutamate_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018109">
        <property type="entry name" value="Folylpolyglutamate_synth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036565">
        <property type="entry name" value="Mur-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036615">
        <property type="entry name" value="Mur_ligase_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013221">
        <property type="entry name" value="Mur_ligase_cen"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11136">
        <property type="entry name" value="PTHR11136"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08245">
        <property type="entry name" value="Mur_ligase_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001563">
        <property type="entry name" value="Folylpolyglu_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53244">
        <property type="entry name" value="SSF53244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53623">
        <property type="entry name" value="SSF53623"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01499">
        <property type="entry name" value="folC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01012">
        <property type="entry name" value="FOLYLPOLYGLU_SYNT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="18" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="14" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="8" id="KW-0132">Cell division</keyword>
    <keyword evidence="12" id="KW-0133">Cell shape</keyword>
    <keyword evidence="15" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="11" id="KW-0289">Folate biosynthesis</keyword>
    <keyword evidence="18" id="KW-0436">Ligase</keyword>
    <keyword evidence="10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="18" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="21" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mur_ligase_M" evidence="19">
        <location>
            <begin position="47"/>
            <end position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000058"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00000104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00000809"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00002714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00004799"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00013023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00019357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00030048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00032510"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="PIRNR" id="PIRNR001563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="19">
        <source>
            <dbReference type="Pfam" id="PF08245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="EMBL" id="SHH06989.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="425" mass="45816" checksum="43FF2B2A958E6CD0" modified="2017-03-15" version="1">MTLQSDVILERMMTLHPKVMDLTLGRVWTLLDRLGNPQNKLPPVIHIAGTNGKGSTQAMTRAGLEATGAKVHAYTSPHLARFHERIRLAGELISEDHLTEILDRCYEANNGKQITYFEITTVAAILAFAETPADYTLLEVGLGGRLDATNVIDKPALTVITPVDLDHQQFLGETLPEITGEKAGIIKQGIPCAVGPQQEAAMDVIERQAMRHSAPLIAYGQQWHVSVENDRLIFQDESGLLDLPKPALRGPHQIQNAGLAIAGLRALGVGEAGCEAAVTNAYWPARMQKMTSGVLVERAKPAELWLDGGHNPAAGRALADTLKEQPKRPTHLICGMLNTKDISGYLRPLSEVAASLTAVSIPGEQNTIPAEETAKFAAKVGLEALVADDVESAIEQIVVLEPNARILICGSLYLAGHVLRVNDPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q0G0</accession>
    <name>A0A1M5Q0G0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1958</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07396.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH07396">
        <property type="protein sequence ID" value="SHH07396"/>
        <property type="gene ID" value="SAMN05444003_1958"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH07396.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="35" mass="4103" checksum="0B3A89D310C0B772" modified="2017-03-15" version="1">MLEFATSCQTRQAIENAHKERGKILGEVWRWVTGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q209</accession>
    <name>A0A1M5Q209_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Orotidine 5'-phosphate decarboxylase</fullName>
            <ecNumber evidence="7">4.1.1.23</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">OMP decarboxylase</fullName>
            <shortName evidence="7">OMPDCase</shortName>
            <shortName evidence="7">OMPdecase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">pyrF</name>
        <name evidence="10" type="ORF">SAMN05444003_1997</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 7">Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>H(+) + orotidine 5'-phosphate = CO2 + UMP</text>
            <dbReference type="Rhea" id="RHEA:11596"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57538"/>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
            <dbReference type="EC" id="4.1.1.23"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 7 8">Pyrimidine metabolism; UMP biosynthesis via de novo pathway; UMP from orotate: step 2/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the OMP decarboxylase family. Type 1 subfamily.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.23" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08104.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1997"/>
    <dbReference type="EnsemblBacteria" id="SHH08104">
        <property type="protein sequence ID" value="SHH08104"/>
        <property type="gene ID" value="SAMN05444003_1997"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00070">
        <property type="reaction ID" value="UER00120"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004590">
        <property type="term" value="F:orotidine-5'-phosphate decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006207">
        <property type="term" value="P:'de novo' pyrimidine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044205">
        <property type="term" value="P:'de novo' UMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01200_B">
        <property type="entry name" value="OMPdecase_type1_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014732">
        <property type="entry name" value="OMPdecase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018089">
        <property type="entry name" value="OMPdecase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001754">
        <property type="entry name" value="OMPdeCOase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32119:SF2">
        <property type="entry name" value="PTHR32119:SF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00215">
        <property type="entry name" value="OMPdecase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00934">
        <property type="entry name" value="OMPdecase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="SSF51366"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01740">
        <property type="entry name" value="pyrF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00156">
        <property type="entry name" value="OMPDECASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7 8" id="KW-0210">Decarboxylase</keyword>
    <keyword evidence="6 7 8" id="KW-0456">Lyase</keyword>
    <keyword evidence="5 7 8" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="OMPdecase" evidence="9">
        <location>
            <begin position="5"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="61"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="7">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="11"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="33"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="116"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="179"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="188"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="208"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="209"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001419"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002356"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004861"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01200"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM00934"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH08104.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="238" mass="24862" checksum="F406129CA8A54310" modified="2017-03-15" version="1">MSDDRLIVALDVPNVLDGLALAEKLGDTVSFYKIGLGMLTGGGLALANELKQDHGKRIFLDMKFFDIGATVEAAVRGIAQFDLDFLTVHGDPYVVRAAKEGAAGKDLKILGVTVLTSLDRSDLDDACIKDGAITDLVQERAGKALEAGADGVIASPQEASLIRTLPEASGKLIVTPGVRPSGADLGDQKRVATPAQAIADGADHIVVGRPVWKAADPKSAVQSMLSELNSPQALTPNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q2U3</accession>
    <name>A0A1M5Q2U3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">NTE family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2006</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08302.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900768.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2006"/>
    <dbReference type="EnsemblBacteria" id="SHH08302">
        <property type="protein sequence ID" value="SHH08302"/>
        <property type="gene ID" value="SAMN05444003_2006"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016042">
        <property type="term" value="P:lipid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016035">
        <property type="entry name" value="Acyl_Trfase/lysoPLipase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002641">
        <property type="entry name" value="PNPLA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01734">
        <property type="entry name" value="Patatin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52151">
        <property type="entry name" value="SSF52151"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51635">
        <property type="entry name" value="PNPLA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0442">Lipid degradation</keyword>
    <keyword evidence="1 2" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PNPLA" evidence="3">
        <location>
            <begin position="6"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="GXSXG" evidence="2">
        <location>
            <begin position="37"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="2">
        <location>
            <position position="39"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51635"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH08302.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="273" mass="29373" checksum="589CA7193C05A52E" modified="2017-03-15" version="1">MTTISLALGAGGARGLAHIHVLRALEELGIRPVAVSGSSIGSIIGAAYCAGITSDELVAEIESGLDDPLGLLRDMTRINRESFTSFFKKGGFRFGQLDLERLLEGVLPDEFPRTFEELEIPLKVSATDYYGECANIFDEGDLRFAVAASSAIPGVFLPVKKDGRFFIDGNATDPCPISVVHDLADHVVAVDVTGGATGDPTERPGLFDVNYVAGQLMQKSIVRTNAAKHPNTVLLRPPVDEFFALDFHKAREILDETEALKEQAKTAIDALMV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q4K7</accession>
    <name>A0A1M5Q4K7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="15">Formamidopyrimidine-DNA glycosylase</fullName>
            <shortName evidence="15">Fapy-DNA glycosylase</shortName>
            <ecNumber evidence="15">3.2.2.23</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="15">DNA-(apurinic or apyrimidinic site) lyase MutM</fullName>
            <shortName evidence="15">AP lyase MutM</shortName>
            <ecNumber evidence="15">4.2.99.18</ecNumber>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="15" type="primary">mutM</name>
        <name evidence="15" type="synonym">fpg</name>
        <name evidence="19" type="ORF">SAMN05444003_2045</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="19 20" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="19 20">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="15">Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="14">
            <text>2'-deoxyribonucleotide-(2'-deoxyribose 5'-phosphate)-2'-deoxyribonucleotide-DNA = a 3'-end 2'-deoxyribonucleotide-(2,3-dehydro-2,3-deoxyribose 5'-phosphate)-DNA + a 5'-end 5'-monophospho-2'-deoxyribonucleoside-DNA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:66592"/>
            <dbReference type="Rhea" id="RHEA-COMP:13180"/>
            <dbReference type="Rhea" id="RHEA-COMP:16897"/>
            <dbReference type="Rhea" id="RHEA-COMP:17067"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:136412"/>
            <dbReference type="ChEBI" id="CHEBI:157695"/>
            <dbReference type="ChEBI" id="CHEBI:167181"/>
            <dbReference type="EC" id="4.2.99.18"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 15">
            <text>Hydrolysis of DNA containing ring-opened 7-methylguanine residues, releasing 2,6-diamino-4-hydroxy-5-(N-methyl)formamidopyrimidine.</text>
            <dbReference type="EC" id="3.2.2.23"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="15">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="15">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3 15">Monomer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 15">Belongs to the FPG family.</text>
    </comment>
    <dbReference type="EC" id="3.2.2.23" evidence="15"/>
    <dbReference type="EC" id="4.2.99.18" evidence="15"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09054.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900803.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2045"/>
    <dbReference type="EnsemblBacteria" id="SHH09054">
        <property type="protein sequence ID" value="SHH09054"/>
        <property type="gene ID" value="SAMN05444003_2045"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140078">
        <property type="term" value="F:class I DNA-(apurinic or apyrimidinic site) endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003684">
        <property type="term" value="F:damaged DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008534">
        <property type="term" value="F:oxidized purine nucleobase lesion DNA N-glycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006284">
        <property type="term" value="P:base-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00103">
        <property type="entry name" value="Fapy_DNA_glycosyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015886">
        <property type="entry name" value="DNA_glyclase/AP_lyase_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015887">
        <property type="entry name" value="DNA_glyclase_Znf_dom_DNA_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020629">
        <property type="entry name" value="Formamido-pyr_DNA_Glyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012319">
        <property type="entry name" value="FPG_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035937">
        <property type="entry name" value="MutM-like_N-ter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010979">
        <property type="entry name" value="Ribosomal_S13-like_H2TH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000214">
        <property type="entry name" value="Znf_DNA_glyclase/AP_lyase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010663">
        <property type="entry name" value="Znf_FPG/IleRS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01149">
        <property type="entry name" value="Fapy_DNA_glyco"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06831">
        <property type="entry name" value="H2TH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06827">
        <property type="entry name" value="zf-FPG_IleRS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00898">
        <property type="entry name" value="Fapy_DNA_glyco"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01232">
        <property type="entry name" value="H2TH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46946">
        <property type="entry name" value="SSF46946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81624">
        <property type="entry name" value="SSF81624"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00577">
        <property type="entry name" value="fpg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51068">
        <property type="entry name" value="FPG_CAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01242">
        <property type="entry name" value="ZF_FPG_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51066">
        <property type="entry name" value="ZF_FPG_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 15" id="KW-0227">DNA damage</keyword>
    <keyword evidence="10 15" id="KW-0234">DNA repair</keyword>
    <keyword evidence="9 15" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="13 15" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="7 15" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="11 15 19" id="KW-0456">Lyase</keyword>
    <keyword evidence="4 15" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12 15" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 15" id="KW-0862">Zinc</keyword>
    <keyword evidence="6 15 16" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="FPG_CAT" evidence="18">
        <location>
            <begin position="2"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="domain" description="FPG-type" evidence="17">
        <location>
            <begin position="247"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with DNA" evidence="15">
        <location>
            <position position="2"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="15">
        <location>
            <position position="3"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor; for beta-elimination activity" evidence="15">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor; for delta-elimination activity" evidence="15">
        <location>
            <position position="273"/>
        </location>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="100"/>
        </location>
        <ligand>
            <name>DNA</name>
            <dbReference type="ChEBI" id="CHEBI:16991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="119"/>
        </location>
        <ligand>
            <name>DNA</name>
            <dbReference type="ChEBI" id="CHEBI:16991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="162"/>
        </location>
        <ligand>
            <name>DNA</name>
            <dbReference type="ChEBI" id="CHEBI:16991"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001668"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00024490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00103"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="PROSITE" id="PS51066"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS51068"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="SHH09054.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="283" mass="31602" checksum="D06DAE4EF68B8F74" modified="2017-03-15" version="1">MPELPEVETVRTGLAPAMEGQVIVQADVNRPDLRWPFPEQMSERLTGAEILRLRRRSKYILADLSTDETLLIHLGMSGRMTVSGHALGDFYHDHPAPQKHDHVVFHMSNDARITFNDARRFGAMDLMPTAGQDDHWLLKDIGPEPLGNDFNEAHLIAKLKGKNTPIKTALLDQRIVAGLGNIYVCEVLFRAGIHPARKAGRISANRVASMVPIIRDVLSEAIESGGSSLRDYRQADGELGYFQHGFKTYDRDGETCVTPDCGKKIKRIVQSGRSSFFCPQCQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q675</accession>
    <name>A0A1M5Q675_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 6">Isopentenyl-diphosphate Delta-isomerase</fullName>
            <shortName evidence="6">IPP isomerase</shortName>
            <ecNumber evidence="3 6">5.3.3.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">IPP:DMAPP isomerase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Isopentenyl pyrophosphate isomerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">idi</name>
        <name evidence="9" type="ORF">SAMN05444003_2056</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>isopentenyl diphosphate = dimethylallyl diphosphate</text>
            <dbReference type="Rhea" id="RHEA:23284"/>
            <dbReference type="ChEBI" id="CHEBI:57623"/>
            <dbReference type="ChEBI" id="CHEBI:128769"/>
            <dbReference type="EC" id="5.3.3.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="6">Binds 1 Mg(2+) ion per subunit. The magnesium ion binds only when substrate is bound.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="6">Binds 1 Mn(2+) ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 6">Isoprenoid biosynthesis; dimethylallyl diphosphate biosynthesis; dimethylallyl diphosphate from isopentenyl diphosphate: step 1/1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the IPP isomerase type 1 family.</text>
    </comment>
    <dbReference type="EC" id="5.3.3.2" evidence="3 6"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09271.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900813.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2056"/>
    <dbReference type="EnsemblBacteria" id="SHH09271">
        <property type="protein sequence ID" value="SHH09271"/>
        <property type="gene ID" value="SAMN05444003_2056"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00059">
        <property type="reaction ID" value="UER00104"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004452">
        <property type="term" value="F:isopentenyl-diphosphate delta-isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050992">
        <property type="term" value="P:dimethylallyl diphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008299">
        <property type="term" value="P:isoprenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02885">
        <property type="entry name" value="IPP_Isomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00202">
        <property type="entry name" value="Idi"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011876">
        <property type="entry name" value="IsopentenylPP_isomerase_typ1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF018427">
        <property type="entry name" value="Isopntndiph_ism"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02150">
        <property type="entry name" value="IPP_isom_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 6 9" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4 6" id="KW-0414">Isoprene biosynthesis</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0464">Manganese</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="8">
        <location>
            <begin position="27"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="active site" evidence="6 7">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <feature type="active site" evidence="6 7">
        <location>
            <position position="111"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="23"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="29"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="65"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="83"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="109"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="111"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007579"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012057"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR018427-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH09271.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="178" mass="20120" checksum="2F6758F5C755C43C" modified="2017-03-15" version="1">MTKTVIPAWVDGVLTPVEKLLVHQKGLKHKAISVFVMNKGRVLLQQRAMCKYHTPGLWANTCCTHPNWNEDPSDCAVRRLDDELGIKGLYPSHRGQVEYRADVGNGLIEHEVAEIYLANAPDDLAINPNPDEVMATRWVDYYDLTAEVKRKPELFTPWLQIYLAEHADSIFGHAMQAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q8R0</accession>
    <name>A0A1M5Q8R0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 15">Undecaprenyl-diphosphatase</fullName>
            <ecNumber evidence="4 15">3.6.1.27</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="14 15">Bacitracin resistance protein</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13 15">Undecaprenyl pyrophosphate phosphatase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="15" type="primary">uppP</name>
        <name evidence="16" type="ORF">SAMN05444003_2103</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="15">Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 15">
            <text>di-trans,octa-cis-undecaprenyl diphosphate + H2O = di-trans,octa-cis-undecaprenyl phosphate + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:28094"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58405"/>
            <dbReference type="ChEBI" id="CHEBI:60392"/>
            <dbReference type="EC" id="3.6.1.27"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="15">Cell membrane</location>
            <topology evidence="15">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="15">Bacitracin is thought to be involved in the inhibition of peptidoglycan synthesis by sequestering undecaprenyl diphosphate, thereby reducing the pool of lipid carrier available.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 15">Belongs to the UppP family.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.27" evidence="4 15"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH10181.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900855.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2103"/>
    <dbReference type="EnsemblBacteria" id="SHH10181">
        <property type="protein sequence ID" value="SHH10181"/>
        <property type="gene ID" value="SAMN05444003_2103"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050380">
        <property type="term" value="F:undecaprenyl-diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016311">
        <property type="term" value="P:dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046677">
        <property type="term" value="P:response to antibiotic"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01006">
        <property type="entry name" value="Undec_diphosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003824">
        <property type="entry name" value="UppP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30622">
        <property type="entry name" value="PTHR30622"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02673">
        <property type="entry name" value="BacA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00753">
        <property type="entry name" value="undec_PP_bacA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12 15" id="KW-0046">Antibiotic resistance</keyword>
    <keyword evidence="7" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="6 15" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="15" id="KW-0133">Cell shape</keyword>
    <keyword evidence="15" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="9 15" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="11 15" id="KW-0472">Membrane</keyword>
    <keyword evidence="15" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 15" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10 15" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="43"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="82"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="112"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="183"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="216"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="244"/>
            <end position="264"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010621"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012374"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00021581"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00032707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00032932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="SHH10181.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="266" mass="28477" checksum="B08BBD8CA67DEF66" modified="2017-03-15" version="1">MDGNTTLVAALLGILEGATEFIPVSSTAHLLLAGEVLGFESTAKTFEIVIQLGAVLAILSVYAKRLLGVAKLTPHDPEARRFFLSIVLACIPAGVLGIAFNDFIKETLFNSLTAIAIVLIVGGVILLFVDRLKLTVKHEDAMRVPLKTAFAIGLFQCLALMPGTSRSGATIVGGMLMGVSKRAAAEFSFFLTMPVMFGATLVDLLKNWDQLDGSAIWLIAVGFATAFITAVIVVRVVLDYISQNGYALFGWWRIIVGLAALGYFHI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QH24</accession>
    <name>A0A1M5QH24_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Carbohydrate ABC transporter ATP-binding protein, CUT1 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_2122</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH13504.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900923.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH13504">
        <property type="protein sequence ID" value="SHH13504"/>
        <property type="gene ID" value="SAMN05444003_2122"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015430">
        <property type="term" value="F:ABC-type glycerol-3-phosphate transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008643">
        <property type="term" value="P:carbohydrate transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001407">
        <property type="term" value="P:glycerophosphodiester transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03301">
        <property type="entry name" value="ABC_MalK_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015855">
        <property type="entry name" value="ABC_transpr_MalK-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040582">
        <property type="entry name" value="OB_MalK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017922">
        <property type="entry name" value="UgpC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43875:SF12">
        <property type="entry name" value="PTHR43875:SF12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17912">
        <property type="entry name" value="OB_MalK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0762">Sugar transport</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="4"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="36"/>
            <end position="43"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH13504.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="355" mass="38551" checksum="7B2EFC7E38C634F4" modified="2017-03-15" version="1">MATVSLKDIKKSFGSTDVIHGIDMDIEDGEFIVIVGPSGCGKSTLLRMVAGLETVTSGDVMIGGERANDKEPMDRDIAMVFQNYALYPHMSVRQNMGYGLKIAGLPKDQIEAKVQEAAKLLQLEPLLDRKPRQLSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIRELQANLGITSLYVTHDQVEAMTMADRMIVMNGGVAEQIGSPLEVYEKPRTLFAAQFIGSPAMNIFDANISDGKVKIADQVIARTDGPDGAVKVGIRPEHLEQDAGGPIRTFIQMSEPLGANTLLHGKLASEASAITVSLSGVHTIDPSGKEMAFKVTPENLHLFDIQSGRRLARSTGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QJ87</accession>
    <name>A0A1M5QJ87_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Zinc/manganese transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_2144</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the ABC-3 integral membrane protein family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH13936.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900953.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2144"/>
    <dbReference type="EnsemblBacteria" id="SHH13936">
        <property type="protein sequence ID" value="SHH13936"/>
        <property type="gene ID" value="SAMN05444003_2144"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037294">
        <property type="entry name" value="ABC_BtuC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001626">
        <property type="entry name" value="ABC_TroCD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30477">
        <property type="entry name" value="PTHR30477"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00950">
        <property type="entry name" value="ABC-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81345">
        <property type="entry name" value="SSF81345"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="19"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="70"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="102"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="140"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="201"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="227"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="256"/>
            <end position="279"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH13936.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="289" mass="29931" checksum="CFC518075CE952C2" modified="2017-03-15" version="1">MIYDFLVAPFADFGFMRRALLGCIAVALGATPVGVFLMLRRMSLTGDAMAHAILPGAAIGYLVSGLSLGAMTIGGLIAGMIVALGSGFVARFTALREDASLAAFYLISLALGVLIVSTRGGNVDLMHVLFGTVLALDDSALILLCSFASISLITLAIFFRPLVLECADPQFLRSVSKLSAITHFTFLTLVVMNLVAGFHALGTLMAVGIMILPAAAARFWAQGIGGLIAAAAAVAILSSFIGLLLSFHYSLPSGPAIILVAGGGYVLSLIFGPVGGIVAQNLPRQHFET</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QJM9</accession>
    <name>A0A1M5QJM9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Lipopolysaccharide export system protein LptC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2152</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14106.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900965.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2152"/>
    <dbReference type="EnsemblBacteria" id="SHH14106">
        <property type="protein sequence ID" value="SHH14106"/>
        <property type="gene ID" value="SAMN05444003_2152"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH14106.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="193" mass="20561" checksum="46D778B04E76A416" modified="2017-03-15" version="1">MVGWAKVILPVMGIALLSTLFLFSRSSSDSNEIPFAQLSELAEEQRINAPEFSGVAADGSIIKISARSAQPLEGKLDTLSIDGPSLRLDSPDGTELTISAGEGLIDGPSRYAELSGLARLETSSGYMMETAGLRADLATGEIVSDGRLKVLAPFGELEAGNVSILVPSMDEGQQMHFTDGVRMLYQPQSRIEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QKF7</accession>
    <name>A0A1M5QKF7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Arginine biosynthesis bifunctional protein ArgJ</fullName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName evidence="7">Glutamate N-acetyltransferase</fullName>
                <ecNumber evidence="7">2.3.1.35</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="7">Ornithine acetyltransferase</fullName>
                <shortName evidence="7">OATase</shortName>
            </alternativeName>
            <alternativeName>
                <fullName evidence="7">Ornithine transacetylase</fullName>
            </alternativeName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="7">Amino-acid acetyltransferase</fullName>
                <ecNumber evidence="7">2.3.1.1</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="7">N-acetylglutamate synthase</fullName>
                <shortName evidence="7">AGSase</shortName>
            </alternativeName>
        </domain>
        <component>
            <recommendedName>
                <fullName evidence="7">Arginine biosynthesis bifunctional protein ArgJ alpha chain</fullName>
            </recommendedName>
        </component>
        <component>
            <recommendedName>
                <fullName evidence="7">Arginine biosynthesis bifunctional protein ArgJ beta chain</fullName>
            </recommendedName>
        </component>
    </protein>
    <gene>
        <name evidence="7" type="primary">argJ</name>
        <name evidence="8" type="ORF">SAMN05444003_2176</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>L-glutamate + N(2)-acetyl-L-ornithine = L-ornithine + N-acetyl-L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:15349"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:44337"/>
            <dbReference type="ChEBI" id="CHEBI:46911"/>
            <dbReference type="ChEBI" id="CHEBI:57805"/>
            <dbReference type="EC" id="2.3.1.35"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>acetyl-CoA + L-glutamate = CoA + H(+) + N-acetyl-L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:24292"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:44337"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="EC" id="2.3.1.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Amino-acid biosynthesis; L-arginine biosynthesis; L-ornithine and N-acetyl-L-glutamate from L-glutamate and N(2)-acetyl-L-ornithine (cyclic): step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="7">Amino-acid biosynthesis; L-arginine biosynthesis; N(2)-acetyl-L-ornithine from L-glutamate: step 1/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3 7">Heterotetramer of two alpha and two beta chains.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="7">Some bacteria possess a monofunctional ArgJ, i.e., capable of catalyzing only the fifth step of the arginine biosynthetic pathway.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the ArgJ family.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.35" evidence="7"/>
    <dbReference type="EC" id="2.3.1.1" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14605.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901000.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2176"/>
    <dbReference type="EnsemblBacteria" id="SHH14605">
        <property type="protein sequence ID" value="SHH14605"/>
        <property type="gene ID" value="SAMN05444003_2176"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00106"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004042">
        <property type="term" value="F:acetyl-CoA:L-glutamate N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004358">
        <property type="term" value="F:glutamate N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0103045">
        <property type="term" value="F:methione N-acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006526">
        <property type="term" value="P:arginine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02152">
        <property type="entry name" value="OAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.340">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01106">
        <property type="entry name" value="ArgJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002813">
        <property type="entry name" value="Arg_biosynth_ArgJ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016117">
        <property type="entry name" value="ArgJ-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042195">
        <property type="entry name" value="ArgJ_beta_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23100">
        <property type="entry name" value="PTHR23100"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01960">
        <property type="entry name" value="ArgJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56266">
        <property type="entry name" value="SSF56266"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00120">
        <property type="entry name" value="ArgJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="5 7" id="KW-0068">Autocatalytic cleavage</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7 8" id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_5023533760" description="Arginine biosynthesis bifunctional protein ArgJ alpha chain" evidence="7">
        <location>
            <begin position="1"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5023533758" description="Arginine biosynthesis bifunctional protein ArgJ beta chain" evidence="7">
        <location>
            <begin position="195"/>
            <end position="404"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="7">
        <location>
            <position position="195"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="158"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="184"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="195"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="276"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="399"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="404"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Involved in the stabilization of negative charge on the oxyanion by the formation of the oxyanion hole" evidence="7">
        <location>
            <position position="121"/>
        </location>
    </feature>
    <feature type="site" description="Involved in the stabilization of negative charge on the oxyanion by the formation of the oxyanion hole" evidence="7">
        <location>
            <position position="122"/>
        </location>
    </feature>
    <feature type="site" description="Cleavage; by autolysis" evidence="7">
        <location>
            <begin position="194"/>
            <end position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000498"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006774"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022813"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH14605.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="404" mass="41409" checksum="9BD4F8BB40AD7362" modified="2017-03-15" version="1">MEKSPLAPDHFPDLPVIDGVTFAAIAAGVKYKDRTDVMLAVMAPGTQIAGVFTKSSTRSANVLDCQAKLGGASDAGAAIIVNSGNSNAFTGKAGEGSVAAVCEATADALGIPTERVFTAATGVIGERLPHDKITAKIDELVVAQNAGGLEAAANAIMTTDTFAKGATKTVEIDGKPVKIAGIAKGSGMIAPDMATMLVYIFTDAKLGQDELQATLGSLCDETFNCITVDSDTSTSDSLMLAATGVSGVDVSGNASFTNALKDVMLDLSHQVVRDGEGATKFVEVTVTGGATDASAKTIGLAIANSPLVKTAIAGEDPNWGRIVMAIGKSGEPADRDKISIHFGDILVAEEGWVADSYTEDAGASYMKAQDLKISVDLGIGTGTSTVWTCDLTHGYITINADYRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QKN6</accession>
    <name>A0A1M5QKN6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2173</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14548.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900994.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2173"/>
    <dbReference type="EnsemblBacteria" id="SHH14548">
        <property type="protein sequence ID" value="SHH14548"/>
        <property type="gene ID" value="SAMN05444003_2173"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="9"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH14548.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="367" mass="38789" checksum="C3C1CCBE5812D748" modified="2017-03-15" version="1">MDRTKLKRYGIGAATFATALTIGFVIQYGDAVASRVGGQDTAPEPQAAAETDEQIIMPATASVVAPPVLPTPEVTAPATSNVALTEIPEDINVPTLLLPYDEAAEAESPIDETATEAPEMELAAADVVEDLTISPMTLDAEVVDTVQDVAQSCGLRVLATASDMAMVDLTLDAPCQTEASFAIYHQGMTISAMTDDLGLAQLSIPALNEHALFIVTFEDGASTMAQAFVSDMNDYDRAVLQWQGAHGFELHALRQSSSYGEDGHIWKGVNGSAETGMVASFTNGDYAAEIYTYPAGQSSSTSSIQLSVEAVIQDKNCGKVINAQAIQIGPNRTTGITDLEMTLPDCNAIGEILVLKNIYEDLTFAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QM11</accession>
    <name>A0A1M5QM11_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">YlxR domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2183</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14750.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901014.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2183"/>
    <dbReference type="EnsemblBacteria" id="SHH14750">
        <property type="protein sequence ID" value="SHH14750"/>
        <property type="gene ID" value="SAMN05444003_2183"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00279">
        <property type="entry name" value="YlxR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007393">
        <property type="entry name" value="DUF448"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029064">
        <property type="entry name" value="L30e-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037465">
        <property type="entry name" value="YlxR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035931">
        <property type="entry name" value="YlxR-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34215">
        <property type="entry name" value="PTHR34215"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04296">
        <property type="entry name" value="YlxR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55315">
        <property type="entry name" value="SSF55315"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64376">
        <property type="entry name" value="SSF64376"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="YlxR" evidence="1">
        <location>
            <begin position="16"/>
            <end position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH14750.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="207" mass="22021" checksum="409C2352380C299F" modified="2017-03-15" version="1">MTRGGQKKDRSGGAERKCIVTGESQPKAGLIRFVVGPDNQVVPDILGKLPGRGMYVSADRAALEVASKGQFSRSAKMAVTVPEGLVDEVERQLVRRALDLIAMSRKAGRAVCGFEKVKGWLAGGERVRVLLQASDGSERGKAKLWTPEGARYFGCFTSAELGLAFGRQSVIHGALAAGGLGDRVVEEATKLRGLRELDGGKPATEKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QSI1</accession>
    <name>A0A1M5QSI1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">HEXXH motif-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2289</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16861.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901177.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH16861">
        <property type="protein sequence ID" value="SHH16861"/>
        <property type="gene ID" value="SAMN05444003_2289"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026337">
        <property type="entry name" value="Mod_HExxH"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04267">
        <property type="entry name" value="mod_HExxH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH16861.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="329" mass="35610" checksum="815665FEB51DC82E" modified="2017-03-15" version="1">MSNYVLPNLKWITDVRATLVERIVLSLDHLIFEANPKQYRGALDRETLQRTLVGPGDFPSASIFAANSALIEAALSNAASQFDDRLEQLERISATTGGAPQSLNVIAFSDIALDPDELVLLQRAYADDVGLTVSLVAPSEEEVSQATAQIQDALDLIGSSSMPWKQEILALAPQIYLASPSAVATRTFGGAAVFDAFGSVLMNPDQFESTEQIALSLVHETSHLQMFLFHLDDPVVLNDEKAAYSSPLRQQPRPMEGIFHAMWVSARMVAAGIDILDGNSSKLDREKLQSIIDDSANAYRDCAVTVSKEGKLSLLGEELFASADSIVNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QUI3</accession>
    <name>A0A1M5QUI3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2322</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17618.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH17618">
        <property type="protein sequence ID" value="SHH17618"/>
        <property type="gene ID" value="SAMN05444003_2322"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH17618.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="315" mass="35159" checksum="B4E5AC41048F3DB9" modified="2017-03-15" version="1">MPRSCKIVFAYRRGQIHMGGKMMRVDQLSQMAADMLPSDQYDVQTAFVPREDRRHKVRELIDACRGAVVIFHKSAASNIGPDTRAEIRKVAAGICVDHLDIVVGPLEKGFFDVHIVASRFAEAELVQNLNGLKPLPGTQVRHLRHHADPRLGEISAREIDNFQLGYFGMLENIADRSAFPDDMSIPDYEPTELDGFLNALPKSNLHVTVRKPFPKRSFGILPTKPFTKGFNAAVVGANVLVNTQVHDATYYLGEDYPFLIPDPSPNSVRAGIEHAREAFGSAEWQMGLDRMADMRAQVAPEKVVQELRQIVDLFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QV02</accession>
    <name>A0A1M5QV02_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Omega-6 fatty acid desaturase (Delta-12 desaturase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2329</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2329"/>
    <dbReference type="EnsemblBacteria" id="SHH17761">
        <property type="protein sequence ID" value="SHH17761"/>
        <property type="gene ID" value="SAMN05444003_2329"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005804">
        <property type="entry name" value="FA_desaturase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012171">
        <property type="entry name" value="Fatty_acid_desaturase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19353">
        <property type="entry name" value="PTHR19353"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00487">
        <property type="entry name" value="FA_desaturase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="48"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="145"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="202"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="domain" description="FA_desaturase" evidence="2">
        <location>
            <begin position="49"/>
            <end position="290"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00487"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH17761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="333" mass="38497" checksum="0D5C1A24DC290EDD" modified="2017-03-15" version="1">MSDRVMELRKAARQFATSDNPRAWRELAGTLGLYIPAYLIAITQYSNLLLFIPAMVITIAMTMRIYMIQHDCIHRSFFKMRSTNDITGKLLSPIAMTPYEATRYNHNLHHAHVSDLDRRDTFEIYVMTLREWEQSGFWKRLAYRIYRSPFVLVFTGPFIVYLLLRRFPLCCLRTGIGDQIIHNLLILGQIGLTYLIAGTNGLWVWLLIVYLTSTLGVLIPYIVHNFENIHWGTRPDMDFATGALDGSSVLDWGWLFHKAVMNIGYHDLHHLNAKIPGYKLKEAHEYLEAQGLLQPVKIGFFQGLSCYQWKLYDEEGGKMIPFPKTKDGQMITA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-09-29" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QWV5</accession>
    <name>A0A1M5QWV5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2342</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18043.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901268.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH18043">
        <property type="protein sequence ID" value="SHH18043"/>
        <property type="gene ID" value="SAMN05444003_2342"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH18043.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="359" mass="41694" checksum="C1A7CFF73ECB6C8D" modified="2017-03-15" version="1">MGTTAILHIGSRKAGSTTLQNDLFSWRHALKDEGILIPEFEGRRINEDATRAFFDENTNDPKLEKVFSKVFRDIEKTQPKYVFLSSEYLYENAYLAANVKRLLSEVCNEIRPVLMLREPAGYYLSWVQQWLKATDRLDDPATWAANYRKNISVWRSVFGDQLVIVPFEARSFPKGLSECFLENFFEVDLGKVELAERKSSNVSEFREVTFLMQEYFRHCYPDQPREFRRETRLIKKTLQEVAEAEGLGSRADLLPKVQEIVLSNHRDDLFWLREVEGIEFSALDYSQLKALGSTSLTQVGRYQRFQDIVGIDETRANLILMKGMQQMSKRISHLVSTKKRLTDKVSRLSGEQSREYLNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R0Z3</accession>
    <name>A0A1M5R0Z3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 17">Ubiquinol-cytochrome c reductase iron-sulfur subunit</fullName>
            <ecNumber evidence="5 17">7.1.1.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="20" type="ORF">SAMN05444003_2424</name>
    </gene>
    <organism evidence="20 21">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="20 21" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20 21">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="16 17">
            <text>a quinol + 2 Fe(III)-[cytochrome c](out) = a quinone + 2 Fe(II)-[cytochrome c](out) + 2 H(+)(out)</text>
            <dbReference type="Rhea" id="RHEA:11484"/>
            <dbReference type="Rhea" id="RHEA-COMP:10350"/>
            <dbReference type="Rhea" id="RHEA-COMP:14399"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
            <dbReference type="ChEBI" id="CHEBI:29034"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
            <dbReference type="EC" id="7.1.1.8"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="17">
            <name>2Fe-2S cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49601"/>
        </cofactor>
        <text evidence="17">Binds 1 [2Fe-2S] cluster per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4 18">The main subunits of complex b-c1 are: cytochrome b, cytochrome c1 and the Rieske protein.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="17">The Rieske protein is a high potential 2Fe-2S protein.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the Rieske iron-sulfur protein family.</text>
    </comment>
    <dbReference type="EC" id="7.1.1.8" evidence="5 17"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19639.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901519.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2424"/>
    <dbReference type="EnsemblBacteria" id="SHH19639">
        <property type="protein sequence ID" value="SHH19639"/>
        <property type="gene ID" value="SAMN05444003_2424"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008121">
        <property type="term" value="F:ubiquinol-cytochrome-c reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.102.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017941">
        <property type="entry name" value="Rieske_2Fe-2S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036922">
        <property type="entry name" value="Rieske_2Fe-2S_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014349">
        <property type="entry name" value="Rieske_Fe-S_prot"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005805">
        <property type="entry name" value="Rieske_Fe-S_prot_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019546">
        <property type="entry name" value="TAT_signal_bac_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019470">
        <property type="entry name" value="Ubiq_cytC_Rdtase_Fe-S_su_TAT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006317">
        <property type="entry name" value="Ubiquinol_cyt_c_Rdtase_Fe-S-su"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10134">
        <property type="entry name" value="PTHR10134"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00355">
        <property type="entry name" value="Rieske"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10399">
        <property type="entry name" value="UCR_Fe-S_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00162">
        <property type="entry name" value="RIESKE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50022">
        <property type="entry name" value="SSF50022"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01416">
        <property type="entry name" value="Rieske_proteo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01409">
        <property type="entry name" value="TAT_signal_seq"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51296">
        <property type="entry name" value="RIESKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="15" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="17" id="KW-0249">Electron transport</keyword>
    <keyword evidence="12" id="KW-0408">Iron</keyword>
    <keyword evidence="13" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="14 17" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="21" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 17" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="11 17" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="17" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="14"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="domain" description="Rieske" evidence="19">
        <location>
            <begin position="127"/>
            <end position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002444"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012951"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00019816"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00029351"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="RuleBase" id="RU004494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="RuleBase" id="RU004497"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="19">
        <source>
            <dbReference type="PROSITE" id="PS51296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="EMBL" id="SHH19639.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="194" mass="20625" checksum="7A5ED5E2E8672E89" modified="2017-03-15" version="1">MSQAEDYQGTRRDFLYYATAGTGAVVTGAAVWPLVNQMNPSADVQALASIRVDVTDVAPGTQLTVLWQGKPVFIRHRTGEEIQSAQSEDDIVETMPDPDARNENINAASLATDENRTIPSPEGEGAGAWIVQMGVCTHLGCVPLGDGAGDFGGWFCPCHGSHYDLSGRIRKGPAPRNLDIPPATFVDGTTIELG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RBK1</accession>
    <name>A0A1M5RBK1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Porin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2495</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23712.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901577.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2495"/>
    <dbReference type="EnsemblBacteria" id="SHH23712">
        <property type="protein sequence ID" value="SHH23712"/>
        <property type="gene ID" value="SAMN05444003_2495"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015288">
        <property type="term" value="F:porin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.160.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033900">
        <property type="entry name" value="Gram_neg_porin_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023614">
        <property type="entry name" value="Porin_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13609">
        <property type="entry name" value="Porin_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012432002" evidence="1">
        <location>
            <begin position="21"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="domain" description="Porin_4" evidence="2">
        <location>
            <begin position="8"/>
            <end position="336"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH23712.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="358" mass="35883" checksum="649CB17A4B8DA7A7" modified="2017-03-15" version="1">MKSILLTSTALVAFAGAASAGGHASPISFTGEATLGYNDEAQGGFYWDSSLDVTGTAGLDNGLTATASFGLDIADGNLGGDVMASDFTVTIAGGGASLTFGDTDPVAEANFADVSGMQAVSFNDQDRHFDVAGFEAMLVGSATVAGFTAQISYGVDNGAGNDLTGEQIDAMQIHVNGALSGFTIDFAYQEEFGPTPTIFGISGSTSLGGADITIAYADRDAGIDGPAITSTGISVSYPVGPVTVGGYYTMNDGGTDEFGVSADYVNGPISVSAAYDDDGTDGGDSFSVEGSYDVGNGLTVLAGLVDSGDAYYVAGELDLGSGATLLVSYADDDNNGANDEIGDPEYNAGATVEVSFSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RFU8</accession>
    <name>A0A1M5RFU8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase</fullName>
            <ecNumber evidence="9">2.3.1.117</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Tetrahydrodipicolinate N-succinyltransferase</fullName>
            <shortName evidence="9">THDP succinyltransferase</shortName>
            <shortName evidence="9">THP succinyltransferase</shortName>
            <shortName evidence="9">Tetrahydropicolinate succinylase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">dapD</name>
        <name evidence="11" type="ORF">SAMN05444003_2569</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>(S)-2,3,4,5-tetrahydrodipicolinate + H2O + succinyl-CoA = (S)-2-succinylamino-6-oxoheptanedioate + CoA</text>
            <dbReference type="Rhea" id="RHEA:17325"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15685"/>
            <dbReference type="ChEBI" id="CHEBI:16845"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57292"/>
            <dbReference type="EC" id="2.3.1.117"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="9">Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; LL-2,6-diaminopimelate from (S)-tetrahydrodipicolinate (succinylase route): step 1/3.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Homotrimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 9">Belongs to the transferase hexapeptide repeat family.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.117" evidence="9"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25227.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901689.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2569"/>
    <dbReference type="EnsemblBacteria" id="SHH25227">
        <property type="protein sequence ID" value="SHH25227"/>
        <property type="gene ID" value="SAMN05444003_2569"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00019"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008666">
        <property type="term" value="F:2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019877">
        <property type="term" value="P:diaminopimelate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.166.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00811">
        <property type="entry name" value="DapD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005664">
        <property type="entry name" value="DapD_Trfase_Hexpep_rpt_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001451">
        <property type="entry name" value="Hexapep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018357">
        <property type="entry name" value="Hexapep_transf_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023180">
        <property type="entry name" value="THP_succinylTrfase_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037133">
        <property type="entry name" value="THP_succinylTrfase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00132">
        <property type="entry name" value="Hexapep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14602">
        <property type="entry name" value="Hexapep_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14805">
        <property type="entry name" value="THDPS_N_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="SSF51161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00965">
        <property type="entry name" value="dapD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00101">
        <property type="entry name" value="HEXAPEP_TRANSFERASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="3 9" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="2 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 9" id="KW-0220">Diaminopimelate biosynthesis</keyword>
    <keyword evidence="7 9" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 9" id="KW-0677">Repeat</keyword>
    <keyword evidence="4 9 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="THDPS_N_2" evidence="10">
        <location>
            <begin position="5"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="108"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="145"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00811"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF14805"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH25227.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="275" mass="29603" checksum="E313FEE43071D6A7" modified="2017-03-15" version="1">MSNAQLETAIEAAWEDRDSITPSTTGETREAIEDTLNALDGGTLRVAEKQEDGSWHVNQWAKKAVLLGFRIKDMEQHDGGPQGAGWWDKVDSKFKGWGDNHWKAAGFRAVPNCVVRKSAFIAPGVVLMPSFVNLGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTIIEDNCFIGARSEVVEGCIVREGSVLGMGVFIGQSTKIVDRETGEVMYGEVPPYSVVVAGSMPSKNNVSLYCAVIVKRVDERTRSKTGINELLRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RGN1</accession>
    <name>A0A1M5RGN1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Asparaginase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2582</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25492.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901707.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2582"/>
    <dbReference type="EnsemblBacteria" id="SHH25492">
        <property type="protein sequence ID" value="SHH25492"/>
        <property type="gene ID" value="SAMN05444003_2582"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010349">
        <property type="entry name" value="Asparaginase_II"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42110">
        <property type="entry name" value="PTHR42110"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06089">
        <property type="entry name" value="Asparaginase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH25492.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="331" mass="35165" checksum="F7326C2D8BE8438E" modified="2017-03-15" version="1">MSGPVDMVEVWRGNLLESIHQGHAVVCDEAGEIVEAWGDPEAVIYPRSSCKMIQALPLIESGAADAYNLTSDHLALACASHNAAAIHNDLVSAWLSDLGLSDDDLRCGPQTPRDAEVRDALIKIDQSPCQIHNNCSGKHAGFLTLNKHLGGGPDYEKIDHPVQQANLAAFEELTGETSPAFGIDGCSAPNHACTVHGFARSLAFFATAQDRSDTRSKAAVQLVDAMTKHPELVAGEGRACTELMRAMDGNVALKTGAEAVFSAIIPEKRLSVAVKITDGAFRASEAAVAAILVKLGVLDLSHPATIKRMTPTVTNWRGLEVGHIRPTAALR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RLD0</accession>
    <name>A0A1M5RLD0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Nucleotide-binding protein SAMN05444003_2651</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2651</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Displays ATPase and GTPase activities.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the RapZ-like family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH27025.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2651"/>
    <dbReference type="EnsemblBacteria" id="SHH27025">
        <property type="protein sequence ID" value="SHH27025"/>
        <property type="gene ID" value="SAMN05444003_2651"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00636">
        <property type="entry name" value="RapZ_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005337">
        <property type="entry name" value="RapZ-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30448">
        <property type="entry name" value="PTHR30448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03668">
        <property type="entry name" value="ATP_bind_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005052">
        <property type="entry name" value="P-loopkin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="19"/>
            <end position="26"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="65"/>
            <end position="68"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH27025.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="305" mass="33847" checksum="916033C001FB0F34" modified="2017-03-15" version="1">MTASMKPERTLPAILLVTGPSGAGRSTAINTLEDLGFEVIDNLPLSLLPRLLEGAHDKPLALGLDVRNRDFSSAALLDAFEDLSRRLGDKVQLLYLDSADDVLLNRYSETRRRHPLAPTGRPLDGIAAEKDLLVPIRERADALIDTTSFSPHDLKAEVEHYFGAPAEQRLSISVQSFSYKRGLPRGLDMVLDCRFLRNPHWDEKLRQENGTNEDVVTYIAEDERFEPFYEGSLNMLKTVLPGHVDEGRANFSVGFGCTGGKHRSVALAKKIATTLAQDGWQVSIRHRELERQGIAPEVIQQGVKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RLT7</accession>
    <name>A0A1M5RLT7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Electron transfer flavoprotein alpha subunit apoprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2657</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ETF alpha-subunit/FixB family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH27160.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901828.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2657"/>
    <dbReference type="EnsemblBacteria" id="SHH27160">
        <property type="protein sequence ID" value="SHH27160"/>
        <property type="gene ID" value="SAMN05444003_2657"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01715">
        <property type="entry name" value="ETF_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014730">
        <property type="entry name" value="ETF_a/b_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001308">
        <property type="entry name" value="ETF_a/FixB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033947">
        <property type="entry name" value="ETF_alpha_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014731">
        <property type="entry name" value="ETF_asu_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018206">
        <property type="entry name" value="ETF_asu_C_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43153">
        <property type="entry name" value="PTHR43153"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01012">
        <property type="entry name" value="ETF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00766">
        <property type="entry name" value="ETF_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000089">
        <property type="entry name" value="Electra_flavoP_a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00893">
        <property type="entry name" value="ETF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="SSF52467"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00696">
        <property type="entry name" value="ETF_ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0249">Electron transport</keyword>
    <keyword evidence="4" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ETF" evidence="6">
        <location>
            <begin position="3"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005817"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH27160.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="309" mass="31046" checksum="E8C056EE6C1E1C81" modified="2017-03-15" version="1">MAVLLIADVNAGELSVDATAKAVSAAGALGDVTVLCVGANCKGAADEAAKIDGVAKVLCAEDAVLGHQMAEPAADLIVSLAGDYSHIAAPGTTDAKNIMPRVAALLDTQIISEVTAIVDGDTFERPIYAGNAIQTVKSGDATKVMTIRTAGFDAAGMGGSASVEAIGAPADPGLSSWVEDKVAESDRPELTSAGVVVSGGRGVGSEEDFALIEGLADKLNAAVGASRAAVDSGYAPNDWQVGQTGKVVAPDLYVAVGISGAIQHLAGMKDSKIIVAINKDEEAPIFQVADFGLVADLFDAVPELTSKLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RWU7</accession>
    <name>A0A1M5RWU7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Chromosome partitioning protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2742</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30812.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902009.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2742"/>
    <dbReference type="EnsemblBacteria" id="SHH30812">
        <property type="protein sequence ID" value="SHH30812"/>
        <property type="gene ID" value="SAMN05444003_2742"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015223">
        <property type="entry name" value="MipZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09140">
        <property type="entry name" value="MipZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH30812.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="269" mass="29863" checksum="9CA754D99CCF39F6" modified="2017-03-15" version="1">MAHIIVVGNEKGGAGKSTVSMHVATALARMGHKVGTLDLDLRQKTLGRYIHNRRTFLKDEGLDLPTPDYEDLPEIDQSELKPGENAYDHRLSKAVAGLEPDQDFILIDCPGSHTRLSQVAHSLADTLITPLNDSFIDFDLLAHTDTNGEEITGPSVYSEMVWNARQLRAQAGLAPMDWVVVRNRTGAQAMINKEKMARVIEKLSKRIGFRTAPGFNERVIFRELFSRGLTLLDLRDIGVKGLNISNVAARQELRDLVKALNLPNVTVDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RWW9</accession>
    <name>A0A1M5RWW9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Methyltransferase domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2738</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30725.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902002.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2738"/>
    <dbReference type="EnsemblBacteria" id="SHH30725">
        <property type="protein sequence ID" value="SHH30725"/>
        <property type="gene ID" value="SAMN05444003_2738"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH30725.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="198" mass="21358" checksum="2D8CDDDAF74A100C" modified="2017-03-15" version="1">MTDKTTIDVYDGQAEEYAKLVQQDGPDEHLQAFIDLIPENGTVLDLGSGPAAASAHMRAAGLVPDPVDASLQMVELANRTHDIGARQATFDDISGEELYDGIWANFSLLHAPRSDLPRHIETLCAALKTGGVFHIGMKTGEGEQRDRIGRKYTYVSVNELNDLLDDAGLSVNYTDEGSAKGLDGTDAPWVICRATKNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RY41</accession>
    <name>A0A1M5RY41_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2748</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30948.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2748"/>
    <dbReference type="EnsemblBacteria" id="SHH30948">
        <property type="protein sequence ID" value="SHH30948"/>
        <property type="gene ID" value="SAMN05444003_2748"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045386">
        <property type="entry name" value="DUF6525"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20135">
        <property type="entry name" value="DUF6525"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH30948.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="95" mass="10686" checksum="ECCDED1562F70C2E" modified="2017-03-15" version="1">MMLSNRGTTTLKGKRKSRHPMNDFDALPPELRKWVSEAMLPWSAHSVRKSFRKAIAKTGDPQRALEELDALQTALIAKDSRRIWGAEYPAGPNPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RYQ9</accession>
    <name>A0A1M5RYQ9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2771</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31497.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902054.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH31497">
        <property type="protein sequence ID" value="SHH31497"/>
        <property type="gene ID" value="SAMN05444003_2771"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH31497.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="235" mass="26254" checksum="D178F07E4863125A" modified="2017-03-15" version="1">MTLVLLLGSGPNVLTAKDWSDVPFNHIVAINNAWRVRPDWTHLVHPSDFPEDRMPPQMAPDQKVIQAIDYVPLQNQYGGFVYAGGTMAFTASYWALAALKPRAIAVLGCDMVYPKTERTHFYGKGTADPLREDKTLRSLEAKSARLLVKAAQQGCAMVNLSKEESRLVFPRTDVADVGALKPASFNEELVAAAEAEETRLDYYVPSGKYWKVEDRFDVDAIDALDALWLRSVRRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RZ41</accession>
    <name>A0A1M5RZ41_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized conserved protein, contains Zn-finger domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2777</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31612.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902232.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2777"/>
    <dbReference type="EnsemblBacteria" id="SHH31612">
        <property type="protein sequence ID" value="SHH31612"/>
        <property type="gene ID" value="SAMN05444003_2777"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019401">
        <property type="entry name" value="Znf_CHCC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10276">
        <property type="entry name" value="zf-CHCC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="zf-CHCC" evidence="1">
        <location>
            <begin position="15"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF10276"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH31612.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="59" mass="6692" checksum="60EE78CAFE9EEFFC" modified="2017-03-15" version="1">MTRPAPETKIVKDYRVACDGGESGFGHPRVYLQIPTDTGWVECPYCDAKYVHEDFKDQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S1Y8</accession>
    <name>A0A1M5S1Y8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">D-xylose transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2813</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32469.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902112.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2813"/>
    <dbReference type="EnsemblBacteria" id="SHH32469">
        <property type="protein sequence ID" value="SHH32469"/>
        <property type="gene ID" value="SAMN05444003_2813"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="26"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="55"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="82"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="109"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="136"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="189"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="228"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="269"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="322"/>
            <end position="341"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="361"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="400"/>
            <end position="419"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH32469.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="429" mass="45807" checksum="73A1CF0BEDE87CE6" modified="2017-03-15" version="1">MSDETAATSSPEKRSLLQELEIDTRLLGMIGALVVLWIIFGFFTDWRFMSPRNLFNVSVQTASVAVMATGMVFVIVTRNIDLSVGSMLGFIGMTTAALQVQWLPDIVGLGHWSIWIIAVIFAILMGAVLGAFQGWVIGYLTVPAFIVTLGGFLIYRGAMWWVTQGQTQAPLDTTFRLLGGGAEGTLGETLSWVFGVVAAVSAVGIMLMSRRRKAAHGFHLKPAWAEGILMALAAGLILGYVWIMNSYPIPKGAMKRITASQGIEYTEDLVWYHGVALPVVILVVVTVVMTIIATRTRFGRYIYATGGNPEAAELSGINTRFLTVKIFALMGALTGIASIIASARLNAVDVGLGTLDELRVIAAAVIGGTALAGGIGTIYGAVIGALIMQTLQSGMASVGVDAPLQNIVVGFVLVFAVWVDIVYRRRTGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S1Z5</accession>
    <name>A0A1M5S1Z5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Monosaccharide ABC transporter ATP-binding protein, CUT2 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2812</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902110.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2812"/>
    <dbReference type="EnsemblBacteria" id="SHH32441">
        <property type="protein sequence ID" value="SHH32441"/>
        <property type="gene ID" value="SAMN05444003_2812"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="8"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="40"/>
            <end position="47"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH32441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="251" mass="27324" checksum="BB36EAA601658197" modified="2017-03-15" version="1">MTKQTPLVEMKDIRISFGGIRAVDGVSIDLHPGEVVGLLGHNGAGKSTLIKILSGAYKMDSGEIWINGEKAEINTPRDARSYNIETIYQTLALADNLDAPSNLFLGREILTPLGFVDDDTMEAETRKIMKRLNPNFKKISEPVSALSGGQRQSVAIARAVYFNAKILIMDEPTAALGVHETAMVAKLIGELKKQGLGIFLISHDTREMMELCDRVSVMKNGQLVGTEKVEDVTEDDILSMIILGKNPKAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S3P0</accession>
    <name>A0A1M5S3P0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MoxR-like ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2843</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33207.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902160.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2843"/>
    <dbReference type="EnsemblBacteria" id="SHH33207">
        <property type="protein sequence ID" value="SHH33207"/>
        <property type="gene ID" value="SAMN05444003_2843"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011704">
        <property type="entry name" value="ATPase_dyneun-rel_AAA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07728">
        <property type="entry name" value="AAA_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="1">
        <location>
            <begin position="31"/>
            <end position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH33207.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="291" mass="32165" checksum="FFCE9D6949D7C684" modified="2017-03-15" version="1">MTWTTVQIALAEQNYVASNDLSVALHLALALERPLLLEGAAGVGKTEVARTLSLARNTKLIRLQCYEGLDASQAIYEWNYQRQLLTIRSAAEDGETGKAVEDRIFSRDFLLERPLLEAITQDTPPVLLIDEIDRADEEFEAYLLEVLSDYQVSIPELGTIEATSKPIVILTSNGTRDLSDALRRRCLYAYVDYPDRTTELAILKSRCPQVDDTLARQVIGFVQKLRQEELEKTPGVAEMLDFAAALMGLGIADLTENPAVLQSTLITLLKTQSDQAHLTMDVAARIAGKAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SCE3</accession>
    <name>A0A1M5SCE3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Phenylpropionate dioxygenase, large terminal subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2896</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36186.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902277.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2896"/>
    <dbReference type="EnsemblBacteria" id="SHH36186">
        <property type="protein sequence ID" value="SHH36186"/>
        <property type="gene ID" value="SAMN05444003_2896"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.102.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017941">
        <property type="entry name" value="Rieske_2Fe-2S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036922">
        <property type="entry name" value="Rieske_2Fe-2S_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015879">
        <property type="entry name" value="Ring_hydroxy_dOase_asu_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001663">
        <property type="entry name" value="Rng_hydr_dOase-A"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43756">
        <property type="entry name" value="PTHR43756"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00355">
        <property type="entry name" value="Rieske"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00848">
        <property type="entry name" value="Ring_hydroxyl_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00090">
        <property type="entry name" value="RNGDIOXGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50022">
        <property type="entry name" value="SSF50022"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51296">
        <property type="entry name" value="RIESKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="7" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rieske" evidence="6">
        <location>
            <begin position="31"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH36186.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="359" mass="41134" checksum="66CA7E42E10707D4" modified="2017-03-15" version="1">MTEPIRSLDARYYTDPQIFEVERTGVLSKTWQFAGHTSQIKNAGDYFVFELSGESLFSIRGRDGEIRTFYNVCQHRAHQLVEGSGTTRVVVCPYHAWTYELTGGLRAGPNINAVEGFDKSKICLTSVRTEEFLGFIFVNLDPDAAPMDDWFPNARAELEEWVPHWAKLEPLEFVEIPENCNWKVSVENYSECYHCSLNHPTFATGVVKPETYDIQPQGKCLRHTTECQNLDQMTYDINSGFAHQNEYSSWFLWPMFSFQVYPGNVLNTYHWRALDAEHVVVFRGWHSVGGQEDAVARQLAVQDRETTVEEDIHLVESVQRGLKSRGYVPGPLVLDPKCGVNSEHSVMHLQRWMREAVDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SDR4</accession>
    <name>A0A1M5SDR4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Dimethylglycine dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2906</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GcvT family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36428.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902293.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH36428">
        <property type="protein sequence ID" value="SHH36428"/>
        <property type="gene ID" value="SAMN05444003_2906"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032503">
        <property type="entry name" value="FAO_M"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013977">
        <property type="entry name" value="GCV_T_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006222">
        <property type="entry name" value="GCV_T_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029043">
        <property type="entry name" value="GcvT/YgfZ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027266">
        <property type="entry name" value="TrmE/GcvT_dom1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16350">
        <property type="entry name" value="FAO_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01571">
        <property type="entry name" value="GCV_T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08669">
        <property type="entry name" value="GCV_T_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101790">
        <property type="entry name" value="SSF101790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAO" evidence="2">
        <location>
            <begin position="6"/>
            <end position="364"/>
        </location>
    </feature>
    <feature type="domain" description="FAO_M" evidence="5">
        <location>
            <begin position="367"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="domain" description="GCV_T" evidence="3">
        <location>
            <begin position="425"/>
            <end position="687"/>
        </location>
    </feature>
    <feature type="domain" description="GCV_T_C" evidence="4">
        <location>
            <begin position="716"/>
            <end position="793"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF08669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF16350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH36428.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="801" mass="88438" checksum="613A92A71CB86CF6" modified="2017-03-15" version="1">MNSHYRVVVIGGGVVGTSVLYHLAKMGWSDVCLLERSVLTAGSSWHAAGGIHALNADPNMAALQAYTIDLLSEIEEESDQNIGLHMTGGLTMAGTPDRWEWLQSAYRVFQSIGIEDCRLVTPEEAQELCPIMSKDNLLGGMWADREGYVDTTGTVHAYAIAAKKRGASYFEHTKVEELIQTADGWKVVTDKGTITCEHVVNAAGLWAKQVGRMAGIELPVSPLKHHYLISDTIPQLEELDFEVPMTVDLEGFTYLRQDQKGVLLGIYEVDHEHWAMDGAPWDYGMELFQEQTDRIEHELICGFERYPALQDVGVKTWVNGAFTFSPDGNPLVGPVPGKPGYWCACAVMAGFLQGGGVGKSLAEWMIHGEPEADVFCMDVARYGKFAENQRYIRETTGQFYSRRFVMTYPNEQLPAGRPLKMAPAHDAMTAAGCKWGNSWDLEVPLYFAPEGFEETPTLKRSNAFDIVGEESKAIREGVGLLDITGFSRYEIGGPNAEQWLDKIMASKLPGPNRARLAPMLSPEGRLKGDLTVLNWGDGTYWIMGSYYLRAWHMRWFNDHLEDGVSVRDLGEEMCGFGLAGPKSKAVIEKLAEQDISDLPFMGCRDVDIGPLRAKVARMSVTGELGYEINVRYGDHIALRRLLLEAGADQDIRECGFNAMLSTRIEKTFGIWSAEFTQLYTAAQTGMDRWIDWDKGDFVGREAALKEKEGNGPSQLLVTLQIEDGDSDASGYEPIWNGDDRIGFVTSGAYGYTVGASLAMAMVDREFAAEGTELGVHIVGNLRKAKVIAASPYDPKGQAMRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SFG1</accession>
    <name>A0A1M5SFG1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2941</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37266.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902350.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2941"/>
    <dbReference type="EnsemblBacteria" id="SHH37266">
        <property type="protein sequence ID" value="SHH37266"/>
        <property type="gene ID" value="SAMN05444003_2941"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019660">
        <property type="entry name" value="Put_sensory_transdc_reg_YbjN"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10722">
        <property type="entry name" value="YbjN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH37266.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="167" mass="19080" checksum="D54B1E4C7F91AC90" modified="2017-03-15" version="1">MALSEQYLDADEIHPIDMVEHVAEHHAWEFDRIHDDQIAMAVQGQWRTYSITLAWSNYDETLRLICTYEMEPPEDKMPAIFETLNLINDQCWAGAFTWWAEQQMMVYRYGLVLAGDQSAGPDQVDTMINAAVASCERYYPALQLVTWADRSPAEALNVAIGEAYGRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SJF0</accession>
    <name>A0A1M5SJF0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Acetyl-CoA C-acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_3008</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the thiolase-like superfamily. Thiolase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38722.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902450.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3008"/>
    <dbReference type="EnsemblBacteria" id="SHH38722">
        <property type="protein sequence ID" value="SHH38722"/>
        <property type="gene ID" value="SAMN05444003_3008"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00751">
        <property type="entry name" value="thiolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002155">
        <property type="entry name" value="Thiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020615">
        <property type="entry name" value="Thiolase_acyl_enz_int_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020610">
        <property type="entry name" value="Thiolase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020617">
        <property type="entry name" value="Thiolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020613">
        <property type="entry name" value="Thiolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020616">
        <property type="entry name" value="Thiolase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02803">
        <property type="entry name" value="Thiolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00108">
        <property type="entry name" value="Thiolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000429">
        <property type="entry name" value="Ac-CoA_Ac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01930">
        <property type="entry name" value="AcCoA-C-Actrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00098">
        <property type="entry name" value="THIOLASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00737">
        <property type="entry name" value="THIOLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00099">
        <property type="entry name" value="THIOLASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thiolase_N" evidence="5">
        <location>
            <begin position="5"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="domain" description="Thiolase_C" evidence="6">
        <location>
            <begin position="280"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-thioester intermediate" evidence="3">
        <location>
            <position position="91"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="3">
        <location>
            <position position="359"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="3">
        <location>
            <position position="389"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000429-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH38722.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="403" mass="42175" checksum="20564E523A26E4CF" modified="2017-03-15" version="1">MTEAYIYDAVRTPRGKGRKDGSLHEVTSARLSAGVLNSLKERNGLEGHAVEDVIWGNVTQVGEQGGCLARTAVLASDLDESIPGLAINRFCASGMEAVNLAANQVKGGAGQAYIAGGVEMMGRVAMGSDGAAIAVDPSIAMDTYFVPQGISADIIATEYGFSRDDADALAVESQNRAAAAWADNRFEKSIVPVKDINGLTILDNDEYMRPGTDMQALGSLNASFQQMGEVMPGFDNVALLKYPHLEKINHIHHAGNSSGIVDGSAGVLIGNKEFGEAHGLKPRARIKATAKIGTDPTIMLTGPVPVTEKILADSGMSISDIDLFEVNEAFASVVLRFMQRFDVDDSLVNVNGGSIAMGHPLGATGAIIIGTLLDELERTGKGTGLATLCIASGMGAATIIERV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5STI6</accession>
    <name>A0A1M5STI6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Predicted dithiol-disulfide isomerase, DsbA family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3100</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3100"/>
    <dbReference type="EnsemblBacteria" id="SHH41816">
        <property type="protein sequence ID" value="SHH41816"/>
        <property type="gene ID" value="SAMN05444003_3100"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001853">
        <property type="entry name" value="DSBA-like_thioredoxin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01323">
        <property type="entry name" value="DSBA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DSBA" evidence="1">
        <location>
            <begin position="6"/>
            <end position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH41816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="215" mass="23856" checksum="F009930DDE91AD61" modified="2017-03-15" version="1">MTQPIRVDIVSDVVCPWCAIGYYQLAKAADETGIEIEVHWHPFELNPQMAAEGENLREHLAAKYGTTPEGSKKARARLSEMGAALGFMFNYADDMRMVNTFRAHQLIDWAENQGLAHDAKLALFEAFFTRRENLNDPSVLAEVAQSIGLNHDAALAMLLSGEMADIVRQKEQFWTSRGVTGVPAMIFQRQHLVSGAQGEDNYARILGHLAEIVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5STW3</accession>
    <name>A0A1M5STW3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Dimethylglycine dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_3107</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GcvT family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41944.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902659.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH41944">
        <property type="protein sequence ID" value="SHH41944"/>
        <property type="gene ID" value="SAMN05444003_3107"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032503">
        <property type="entry name" value="FAO_M"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013977">
        <property type="entry name" value="GCV_T_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006222">
        <property type="entry name" value="GCV_T_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029043">
        <property type="entry name" value="GcvT/YgfZ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027266">
        <property type="entry name" value="TrmE/GcvT_dom1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16350">
        <property type="entry name" value="FAO_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01571">
        <property type="entry name" value="GCV_T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08669">
        <property type="entry name" value="GCV_T_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101790">
        <property type="entry name" value="SSF101790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="21"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="domain" description="DAO" evidence="3">
        <location>
            <begin position="20"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="domain" description="FAO_M" evidence="6">
        <location>
            <begin position="381"/>
            <end position="434"/>
        </location>
    </feature>
    <feature type="domain" description="GCV_T" evidence="4">
        <location>
            <begin position="437"/>
            <end position="705"/>
        </location>
    </feature>
    <feature type="domain" description="GCV_T_C" evidence="5">
        <location>
            <begin position="730"/>
            <end position="808"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF08669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF16350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH41944.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="816" mass="89942" checksum="31EB7B350FC5A3A1" modified="2017-03-15" version="1">MPTIQKDETTGAKKLPSHAKVVVIGGGVVGCSILFHLAKFGWKDAVLLERDELTSGSSWHAAGGIHTISSDPNISRLQSYTINLYKEIEDLSGQSVGLHQTGGFYAASTKEWYDYLKGERSKARYMGLDQEFISPKELAERHPLIDPDHYHAVLWDAQDGHLDPSGTTYAFAKAAKVHGAQYFTHCGATDMTQRPDGSWDIFTPKGTINAEQVVNCGGLWAREVGHMAGIHLPVQPMEHHYLITERMDEVVNFGQQLPHGIDFEANVYCRQEGQGMLLGTYEAKATPWKVGGTPWDFGHELLPPDLDRVADRLETAFERLPAMANAGIKDVINGPFTFGPDGNPLIGPVPGMTNYWVAVGVMAGFCQGGGVGLTLAEWMIDGEPSIDVWAMDVARFGEFATPDWGMIKSSENYERRFVMTFPNETLSKGRKQKTTALYDRMIAKGAVMDQGFGLEHVLWFADGPDDAHEVPTFERNRSHDYVAREIKAVREAVGGIEIANFAKHEFKGAGARDYLNHILAGYVPKPGRLSLTPMLTPKGKLYGDLTVACLAEDHFMLFGSGAMQEAHRRWFEKDLPASVAYANVSDDWHGIALSGPKSRDLLARITRDDVSAEAFKFRDLRQTFVGGVPVIINRISFSGELGYEIYCKPQYLMRLADAIEEAGADLGYRWYGARALLSMRLEKGWGVWTMEYRPDFNAVESGMDVFINWKKDFVGKEATSKARDEGVSQKLVTMTIDTDGIDVAHDEAILKDGTPVGYVSSGGYAHHVGQSMAMGYVAAEFATPGTTLQVEILGNFYDAQVLSGPIYDANGANMRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SUW2</accession>
    <name>A0A1M5SUW2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Arylsulfatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3130</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="PTM">
        <text evidence="1">The conversion to 3-oxoalanine (also known as C-formylglycine, FGly), of a serine or cysteine residue in prokaryotes and of a cysteine residue in eukaryotes, is critical for catalytic activity.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42315.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902690.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3130"/>
    <dbReference type="EnsemblBacteria" id="SHH42315">
        <property type="protein sequence ID" value="SHH42315"/>
        <property type="gene ID" value="SAMN05444003_3130"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008484">
        <property type="term" value="F:sulfuric ester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000917">
        <property type="entry name" value="Sulfatase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00884">
        <property type="entry name" value="Sulfatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53649">
        <property type="entry name" value="SSF53649"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sulfatase" evidence="2">
        <location>
            <begin position="5"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="modified residue" description="3-oxoalanine (Cys)" evidence="1">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR600917-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH42315.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="495" mass="55942" checksum="BD941479F9E2F3DD" modified="2017-03-15" version="1">MADKPNILVLWGDDIGFWNISFNNRGQMGYRTPNIDRVAEEGVAFTDYYGQQSCTAGRAAFITGQNPIRTGLTKVGMPGAEVGLQKEDPTIAELLKPHGYSTGQFGKNHLGDLDEYLPTMHGFDEFFGNLYHLNAEEEPEHPDYPKNPQFKERYGPRGVIHSWADGKGGQKIEDTGPLTKKRMETVDDEFLAEAIRFIEDAHNAGDPFFVWFNTTGMHFRTHRPDKHAGKSGQGEYNDMMVAHDETIGVLLDKLDELGITDNTFVMYSTDNGPHFNTWPDAAITPFRSEKNTNWEGAWRVPSFMRWPAKIKAGSIVNGIASHQDMLPTILAAAGDTDIKSKLLDGHTIGDMTYNVHIDGFNLLPYLCGEEEESPRETLFYFSDDGDLLALRHKDWKVVLMEQRAKLLAIWAEPFVPLRVPKMFNLRRDPFERADEYSNTYYDWLIDHAFLIYGMQGLVSAEIDNFIKYPPRQKPASFNLDTVMTQLQEAGSGAGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SV26</accession>
    <name>A0A1M5SV26_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3131</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42337.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902691.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH42337">
        <property type="protein sequence ID" value="SHH42337"/>
        <property type="gene ID" value="SAMN05444003_3131"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017147">
        <property type="term" value="F:Wnt-protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030178">
        <property type="term" value="P:negative regulation of Wnt signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042425">
        <property type="entry name" value="APCDD1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31021">
        <property type="entry name" value="PTHR31021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH42337.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="167" mass="18174" checksum="EB9FC2D7934900E5" modified="2017-03-15" version="1">MRPQPNQDGSIGEWWLTRDITITEDRIEGIFTSYAGPGCDFALQELHFGGGIDIVGPSNVMEGAVEADLTIDDYVKIKTLADDFAAFLNSAPNGTCLSPDWTVGQERDILQEGCLVLGVQPNTPTVEYEILATRDDVIFFGARPTDGTFIVSPDKRPRALLVGAARK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SVE5</accession>
    <name>A0A1M5SVE5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Acetylglutamate kinase</fullName>
            <ecNumber evidence="8">2.7.2.8</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">N-acetyl-L-glutamate 5-phosphotransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">NAG kinase</fullName>
            <shortName evidence="8">NAGK</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">argB</name>
        <name evidence="10" type="ORF">SAMN05444003_3138</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the ATP-dependent phosphorylation of N-acetyl-L-glutamate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>ATP + N-acetyl-L-glutamate = ADP + N-acetyl-L-glutamyl 5-phosphate</text>
            <dbReference type="Rhea" id="RHEA:14629"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:44337"/>
            <dbReference type="ChEBI" id="CHEBI:57936"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.2.8"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="8">Amino-acid biosynthesis; L-arginine biosynthesis; N(2)-acetyl-L-ornithine from L-glutamate: step 2/4.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the acetylglutamate kinase family. ArgB subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.7.2.8" evidence="8"/>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42467.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3138"/>
    <dbReference type="EnsemblBacteria" id="SHH42467">
        <property type="protein sequence ID" value="SHH42467"/>
        <property type="gene ID" value="SAMN05444003_3138"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00107"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003991">
        <property type="term" value="F:acetylglutamate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042450">
        <property type="term" value="P:arginine biosynthetic process via ornithine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04250">
        <property type="entry name" value="AAK_NAGK-C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00082">
        <property type="entry name" value="ArgB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036393">
        <property type="entry name" value="AceGlu_kinase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004662">
        <property type="entry name" value="AcgluKinase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037528">
        <property type="entry name" value="ArgB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001048">
        <property type="entry name" value="Asp/Glu/Uridylate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001057">
        <property type="entry name" value="Glu/AcGlu_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041727">
        <property type="entry name" value="NAGK-C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00696">
        <property type="entry name" value="AA_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000728">
        <property type="entry name" value="NAGK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00474">
        <property type="entry name" value="GLU5KINASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53633">
        <property type="entry name" value="SSF53633"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00761">
        <property type="entry name" value="argB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="2 8" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="7 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 8 10" id="KW-0418">Kinase</keyword>
    <keyword evidence="5 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="AA_kinase" evidence="9">
        <location>
            <begin position="26"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="8">
        <location>
            <begin position="65"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="87"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="179"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="8">
        <location>
            <position position="30"/>
        </location>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="8">
        <location>
            <position position="239"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00696"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH42467.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="280" mass="28969" checksum="915C8897B6226593" modified="2017-03-15" version="1">MDLDWTATAKTLSQALPYMQRYAGATVVIKLGGHAMGSDEAMAEFARDVVLMRQVGVNPVIVHGGGPMINALLDKLDIQSEFVNGKRVTDQDTMDVVEMVLSGQVNNRLVQAINTQGGKAVGLSGKDANLITCDIADPALGLVGTPSKVETTILSDLFAAGAIPVIAPLGVGPYGKTMNINGDTAAGAIAGALKADRLLLLTDVEGVKDKDGAVLTEINALKISDLIADGTIAGGMIPKTETATKAIKEGVRAVVILDGRAPNACLLELFTDHGAGSLIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SY26</accession>
    <name>A0A1M5SY26_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3186</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH43392.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902780.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH43392">
        <property type="protein sequence ID" value="SHH43392"/>
        <property type="gene ID" value="SAMN05444003_3186"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="16"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="39"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH43392.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="198" mass="22475" checksum="30E43AEA4732559C" modified="2017-03-15" version="1">MARSAGRPTRTKAEIQEFRSKIGKHALEIYRAEGFGAVSMRRLAKEVGCAPMTIYAHFERKTDILRFLWADVLRDMSHDIEKKLKSVVGAHERLRTAAQTFVDYWINHPDHFRLIFMSNDVTRADVSTFIKDEGNLVHFLMFSALIQEVIPDELEAEVRTDTLLSGMIGIALCANTIPDYPWSDATSMTEQLLSSIIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SYP0</accession>
    <name>A0A1M5SYP0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 6 9">50S ribosomal protein L22</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rplV</name>
        <name evidence="10" type="ORF">SAMN05444003_3189</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.</text>
    </comment>
    <comment type="function">
        <text evidence="5">This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.</text>
    </comment>
    <comment type="function">
        <text evidence="6 9">This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g., L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6 8">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the universal ribosomal protein uL22 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH43458.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902785.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3189"/>
    <dbReference type="EnsemblBacteria" id="SHH43458">
        <property type="protein sequence ID" value="SHH43458"/>
        <property type="gene ID" value="SAMN05444003_3189"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00336">
        <property type="entry name" value="Ribosomal_L22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01331_B">
        <property type="entry name" value="Ribosomal_L22_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001063">
        <property type="entry name" value="Ribosomal_L22"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036394">
        <property type="entry name" value="Ribosomal_L22/L17_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005727">
        <property type="entry name" value="Ribosomal_L22_bac/chlpt-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13501">
        <property type="entry name" value="PTHR13501"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00237">
        <property type="entry name" value="Ribosomal_L22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54843">
        <property type="entry name" value="SSF54843"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01044">
        <property type="entry name" value="rplV_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 6 7" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="6 8" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="6 8" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009451"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00025084"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01331"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU004005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU004008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH43458.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="126" mass="14129" checksum="5DEACED725C1D6F2" modified="2017-03-15" version="1">MSKGKNPRRVADNEAMAKLRMLRTSPQKLNLVAGMIRGKKVEQALTDLTFSKKRIAGDVKKCLQSAIANAENNHNLDVDELIVAEAYVGKNLTMKRGRPRARGRFGRIIKPFAEITIKVRQVEEQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SZH8</accession>
    <name>A0A1M5SZH8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3202</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH43738.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3202"/>
    <dbReference type="EnsemblBacteria" id="SHH43738">
        <property type="protein sequence ID" value="SHH43738"/>
        <property type="gene ID" value="SAMN05444003_3202"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH43738.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="38" mass="3892" checksum="DBCB5E8ED3C813B8" modified="2017-03-15" version="1" fragment="single">MPIEYLKKAELTSSSGASDVHDTVVSILSEIEAGGDAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T2F8</accession>
    <name>A0A1M5T2F8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3204</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH44925.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902831.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH44925">
        <property type="protein sequence ID" value="SHH44925"/>
        <property type="gene ID" value="SAMN05444003_3204"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH44925.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="70" mass="8024" checksum="22DF66B65ECD45BD" modified="2017-03-15" version="1">MVSRPKRLATAAFTKDMVKTLNKYFDDYQIDGVVNLDVTDKGIWLPVPGQERRKFLGSVTIFDDPSKFRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T545</accession>
    <name>A0A1M5T545_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glutamine--fructose-6-phosphate transaminase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3242</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45818.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902986.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3242"/>
    <dbReference type="EnsemblBacteria" id="SHH45818">
        <property type="protein sequence ID" value="SHH45818"/>
        <property type="gene ID" value="SAMN05444003_3242"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901135">
        <property type="term" value="P:carbohydrate derivative metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05008">
        <property type="entry name" value="SIS_GlmS_GlmD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd05009">
        <property type="entry name" value="SIS_GlmS_GlmD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035466">
        <property type="entry name" value="GlmS/AgaS_SIS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035490">
        <property type="entry name" value="GlmS/FrlB_SIS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001347">
        <property type="entry name" value="SIS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01380">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SSF53697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51464">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="SIS" evidence="2">
        <location>
            <begin position="32"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="domain" description="SIS" evidence="2">
        <location>
            <begin position="193"/>
            <end position="324"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH45818.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="334" mass="34651" checksum="310330A1BADE51DC" modified="2017-03-15" version="1">MTKNETVPGHFMATESAQALDVFATAVRQDVDVADLAGSTAFYTIARGSSDAAANILSYEFMRELGVPMTSLPPSVFSLGKGVSLAGSAAIIVSQSGASDDLVRSAVGAKGAGAKVVAITNQPDSPVEAQSDCIVPIGAGPEKAVPATKTVCGSIGAGQAILSAMSSDFQNRAHRDAKKLAGLSTQFEQANRLQSALLRARHVYVIGRDTGYGAAIETALKLKECVAIHAEAYSASEVLHGPLQLATNPLMVLILDTGTAETQDSLDQAEARFEKEDCDVVRIRVSDFGIDLETPAASAALLLAAVYPIILNTALALGYDPDTPATLSKVTQTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T599</accession>
    <name>A0A1M5T599_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">PF03932 family protein CutC</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">cutC</name>
        <name evidence="3" type="ORF">SAMN05444003_3247</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the CutC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">Once thought to be involved in copper homeostasis, experiments in E.coli have shown this is not the case.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45919.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902908.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3247"/>
    <dbReference type="EnsemblBacteria" id="SHH45919">
        <property type="protein sequence ID" value="SHH45919"/>
        <property type="gene ID" value="SAMN05444003_3247"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.380">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00795">
        <property type="entry name" value="CutC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005627">
        <property type="entry name" value="Cu_homeostasis_CutC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036822">
        <property type="entry name" value="CutC_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12598">
        <property type="entry name" value="PTHR12598"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03932">
        <property type="entry name" value="CutC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110395">
        <property type="entry name" value="SSF110395"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH45919.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="243" mass="25760" checksum="3B3141E657AC70A3" modified="2017-03-15" version="1">MPRNKIPNFEVCVDSAQGIEACVGLVDRIELCSALDIGGLTPSAGLMECAKASGLETHVLIRPAGGDFFMTRSDLDVALADIEQVKKIGLDGVVIGAAIDGHLDTEVLREMAAASAGLKLTLHRAFDVVENQAKALEDAITHGFQRVLTSGGASSAPLALKRLAELVEQSNARIEIMAGGGITLENVDELLSQTGVHAIHSSCSSERTLADPLAQKGFGEVARLTDIEKVREMRDRILSMFPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T5I4</accession>
    <name>A0A1M5T5I4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3249</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45962.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902912.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3249"/>
    <dbReference type="EnsemblBacteria" id="SHH45962">
        <property type="protein sequence ID" value="SHH45962"/>
        <property type="gene ID" value="SAMN05444003_3249"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.150.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018511">
        <property type="entry name" value="Hemolysin-typ_Ca-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001343">
        <property type="entry name" value="Hemolysn_Ca-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011049">
        <property type="entry name" value="Serralysin-like_metalloprot_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00353">
        <property type="entry name" value="HemolysinCabind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51120">
        <property type="entry name" value="SSF51120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00330">
        <property type="entry name" value="HEMOLYSIN_CALCIUM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH45962.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="3813" mass="401042" checksum="A08DD6A63E1742E2" modified="2017-03-15" version="1">MADGSINWLTNQSLKQVDVSQLVEAARSGADVPGVTFVDVSGIVAFSVPEGFNVSWPLILGNDLILVQPDGTLLVLGDAMGENLVLLVDGFRIPVTRYNDLALHEETWQSLDDVEQVTLLELSGGTQTGIGGSGEEEIVTVGDPLVGLAINPLLPPVDYEFPEYERRETGNDGGIGPPDVDFDITGEAVLAETDAALVFRPDDFVDIVAGGFEDGERITDVTITIENLPIGTTSNFGTFTNSNGLLTFEFNGTVEEFANLEILFPKDFSTDNRNDGPNGTDISGDLIVSISANSNFGQGTSTDIPLTITVEGDVEIQGSGVVADIETDAPIDIKISDALNPVATDADGSESITGVTLTLFPLPPGTLISLTGAEADFAAVGPNFVFQGSLAEYEEIVVRLPRDFSTENPPTQLGGTLTAVTDENGMASRDFTIEIEATPDIVIIADSPLMAMEDTAGPDGSGVLIDPMIDVRVEDIDGSEDNTIVSIEFANLPPGTTFSRGIFQEASVFWRGTLDDANNLTFQLPGDFSGSVSWTIRATNLEGEEDASQELVVTPKGDVDIDVDPIVVAETDAPFTINPSSEWVVSISDLDPGLPLEALTEVTLTLRDLPPGVTTSAAFPGFPDGTPSITYDPVNGGDFTFIGTGEQYEQLRIAFPQDFSTAVLDGSDNLIQESIVGEISGVSTEGSNGPVPVELIITPEGDVEIDVLTPDNLEETDAALTFTLGDYLDPKVTDLDSLLSAPAPRYEIFESLELIITGLPNDPLGRFDLASFSGLPAGASLTYDPSGTGPGTLTATFTGRDAADLFSAVTVTVPPDFSTANRSDLAPGETALPIQITINVVTNEDQISGDDTAIDGEATATAEVNIDFTHDINLDVGDTVIADEDGGIPNVSVGVTVDLGLSISVDDTDDSEDQENTSAPFGSQVMIQFSQVVGGLSANRGAVDPLTGEWTGSVDDANNLQLRYPGDYSGTTLAQVTVETPEGIVQDVKQIIIRPVIDVAVDGRVEVDETDADLVVLLSSFVAVDVVPPNETLYSIDFTLDDLPPGTQAIDRVSGDPVGTFTTDPTTGLLSFEYQWTQGDPGPSPADAELVFPTDFSTASPDPDLPLVANLSIETIQGGTILGPEDFDVEIRINYEEDITLVVNPMPPLAETDDFVAVRPFDYLQPGADDNDGSEFIDAVSLIFPDLPPGTEYDIGAGRVAAPLPAFFDGVEYQNLIIYLPPDFSTENPGTTLEAQFTATTNEGGFVQETLTITLSAEGDLDVTGPGTITLSENDPAGSIDTDATTELPLEFSLTQLFDAQASDADGSESIEEVTVTFDNLPDDALYSVDGGLVFNAVPSGVFTLGPISKAEYDDLVIRLPDDFSTESPDNGPLTGTVIFATDESIAAGETPTPANPNDGIEQVAFEVNVDAEGDIRITGQDITRIEDLGAPIPLELDVAITDIDGSERLEDLRVTFTGLPTNGDTILSDGTVLNPANNVWTGTEAELLTLAIDSFPTHFSGRITMDVDVTSNEGTASDQFLLDITPVAEPEIEVSIDTDATTFQLGPKNFSNKEDTPAQLRIEATTADKDTSEALTMVVVENIPTNWLTNGDGNVDPSKIIEGDGQIASASVSGTTLTIMLNAGVTDFTGVFQLQPEADRDEDVATLLGGNEITATVTSVDMATGLPTDTQTAADFVDLDVDAVVDDLAVSGKNRNTDEDTTNVKRFRLGLEDVALSDTDGSEFITGLELTIDVATLSDNYDPNLNSNLRLFAGGGTSGAIDIVRVPIPGTSSTSFTLSKAAGATDAEFQDALTELRIEVPQHFSGVLSNSGTISWQETQTVDAPPGGEFDISDNFATDSTFTSTITVRPIAEATLALDVFVLDGGATDPLDFTDNDVVDGAPMSVSGEAKNGESITIAEIMQLRESTLDGTGPGTNPPTLPDGSINDQVQVYLGLNASTPDRDGSEELENLVISNVPTDWYPTSWQGGTVPQSEWILLRSLSGDAPILQAELDKIQSIRFDPTGRVLTIEFVDDVVEFSASLVLKPTPYEDWDPDQVAPFGVVRPFNATGKTNGTSEGEFFGQDITAVVSTRDGNTKTDDTETAEVEVNIDVAPVNNLAVIVDISVGNEAVIDNLPGGPSGIWDINIILDHDDKDGSEIITAVVLRAIPSGVSVFVPSVVGDPTSPYAPALITQINPDGSSDWSLQDGAWENVQFRGVPLHLAGDFPLQIDAITTEFDGGGTRVSSYNEILRIEPVADGGNPRGNGSGVEDTPFGVNISANIIDSAALLVDRPNDISKEIVDRFRLVDGDFPRDSFGRPFLLFDGPPQIDPANPPDLTDPYNETGYLNLIDPTAWIDWSVVPNLTMLAGIDSNEELTFQIEVEYVEEIKPSEVTTNIGTVSIEVEGVADTPITTAQQEDPTLTPNGIALADIDAVYRANSFDTDGPGGIAPGPIQNYNRVYGYAGDDSAPFLLNQRLTDNALENGFASLAPDEIFQAADPITGIMTETTAITGGTPFDGSETLYYLITGVPPGGSFLGVTPVDPTGETYLVTAQQLATLAFVPPDVDVVTYYDLSFYAIVIEDDVSPTLISSTRALFLDPISNSVIDIAGFLNAIATDRGAAFQEETISIVLLPEDTGGGDNCPDVPLDVPTISLKGSGLEDEAAELKLHIDPSGNPQYQDILDLINLPTLEGIAIQGDLGILIDLPPGSQISADPPGSIIYDPVSGGWAIDLQKFLSGNGDGDTVSSGTIFYTPPAHESSPVNPFNPTETFGPVDPYDNLPDLELSMVLNDITCGTTTTGTGSLDITIAPVLDPAIINVSLESQAPTADYPTPEDQPIDLNISVSSPDGGERIVPGSSVVITINGTHIGGPLSLLDQTLGLEQSGLYDAGGKIIDDGRLQIIGGDYVYTLDQADLAGLYIIPKNHIHGELTVSVAVQTEDIDLAPQTWTGSGSIEIDAIADEPVVDIDETLLDPETGLPIAVLNDNGTPDDVTDDFVVVTAIEDQRIFLQQIAPAFTPDMDGSEFLSAVFIPDPNLEIGATRPLTSIIDNGDGTFTIALEDFDKIWLKLKDEHARTPDNLDPTVPSQVEVDIRLISYELPNGDEFEFDSKFFIQVRPDADKPELVASVTPTTGVEDQPQPYEIVITGNTPDPHEAMQFEVAIQIPSGGFDPANLPVFELDGTPLTLQFSNPADPDDPYGGVPHAFVVLDGQQNVSVPGVDTFIPNGQLTFIPPQDFGGDTASLKVTAITIDDVPAPWSGDGYIDNERSDVLELTLDIAVSPDLDFDLRNPTVSIDETDAPLDYTPTTDIDIDLTDQDGSETIEIIYELDNVPDGTSYTIGGTTTPVPAGPLSITLTSVADFNDLTITFPADFATDSGVINGTVSATTNEGGNAGGAFTLEINGTSDLDVTVTTTASTETGAALVIPLGIDATINDNTPTAYEFLETVEIAFDAPLPAGTIASAGTIAPDGSSLLLERNGAAPAVFVPTVAALTLTIPPGFADDIVADITVTSTHDTQVFTDQTYSINGAPDIVAPPIDIVSTTTTTVLTFAELTATATDPDTPLIVENVSSDDPAISSIVVDQGAKTVTIDVAAGYDATSILTYDIVDSGVGPARTTTTANLDIDTLQMVSTGQQVGADGITREVMSNVAGTVGGTDFAKGTADADLVTHTGAPDSYIDIAGFRMEGGNDLVDLSAASNGFDVDLGAGDDIAIGSSGDDILTGGIGADQLTGGAGFDTLQGGLGDDTFILDALPSVADVITDYGTGADQIDISALVNGVATVTDAEADYNPLTGTLDVLGAQAYLIQGLPPSVEVIFENASGVAEVATLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5KYM6</accession>
    <name>A0A1M5KYM6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0003</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG57972.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898320.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0003"/>
    <dbReference type="EnsemblBacteria" id="SHG57972">
        <property type="protein sequence ID" value="SHG57972"/>
        <property type="gene ID" value="SAMN05444003_0003"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="SSF56219"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="2" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endo/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="4"/>
            <end position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG57972.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="227" mass="25169" checksum="E3D62D7BACC3F4FB" modified="2017-03-15" version="1">MRVASYNIRKAVGLDWRRDPERIVDVLAEIDADVVVLQEADKRIGGRQGVLPLEQVERDLGMILCETSVRPLSHGWHGNAIFAKRALSDYTTDRIDVPSIEPRGAVAAHFHKPNVEVLGVHLGLTAGTRQLQMATLNDVLKTRKHPVLIAGDFNEWNRKLLQFPNAASIVFPGLSFHAARPVSALDLFVMTKGLRAISSRVHFSELARRASDHLPIVIDLEITGDNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5KZ92</accession>
    <name>A0A1M5KZ92_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative hemolysin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0008</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58087.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898325.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG58087">
        <property type="protein sequence ID" value="SHG58087"/>
        <property type="gene ID" value="SAMN05444003_0008"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005590">
        <property type="entry name" value="DUF333"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03891">
        <property type="entry name" value="DUF333"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013245911" evidence="1">
        <location>
            <begin position="21"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG58087.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="126" mass="13427" checksum="DE21F88017B9875A" modified="2017-03-15" version="1">MKQLTLAIAGLTFAAGTASAQQLSPNPAATYCIENGGSYEIVQGANGATGICVQSDGTHVDAWDYFRQSQVLETTVQRLSNPAAVFCVEQGGAYQIVTDVSGAQRGLCVVLEAKTYDAWDYYRANH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5KZA0</accession>
    <name>A0A1M5KZA0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Outer membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0012</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898329.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0012"/>
    <dbReference type="EnsemblBacteria" id="SHG58154">
        <property type="protein sequence ID" value="SHG58154"/>
        <property type="gene ID" value="SAMN05444003_0012"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019867">
        <property type="term" value="C:outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015562">
        <property type="term" value="F:efflux transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003423">
        <property type="entry name" value="OMP_efflux"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010130">
        <property type="entry name" value="T1SS_OMP_TolC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02321">
        <property type="entry name" value="OEP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01844">
        <property type="entry name" value="type_I_sec_TolC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012183565" evidence="3">
        <location>
            <begin position="24"/>
            <end position="452"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG58154.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="452" mass="48483" checksum="41B432821E214543" modified="2017-03-15" version="1">MMFRKYLAIVLGVATLSAPAARAETLIDALTDAYNHSGLLEQNRALLRAADEDVAIALSATKPVVNWSASANYSNPRPPGADLVTENIAISGQLTLYDGGANQLAVDAQKEIVLATRQSLVDVEQQVLFRAVQAYMNVRRSLEFVALRESNVRLITQELRAAEDRFEVGEVTRTDVSLAEARLAAARSLLASAQGSLAQSVEEFRAAVGRAPNQPAPASAAPVSRTVGDAKAYAVRNHPNILEVRHSVAAAELNIMRAEAATRPIVTLGGQIAVDGDFNDSRSFNLTASGPIYAGGRIAAQKRQLIARRDATRAGLHLTRHNLEQQVGNAYANLAVARASRQASDEQTRAATVAFRGVREEASLGSRTTLDVLNAEQELLDARTNTISAQADEVIASYSVLLSMGLLTADHLRLPVQQYDPTEYYNLVKDAPAGLSAQGRALDRVLEAIGQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L0I5</accession>
    <name>A0A1M5L0I5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Methylenetetrahydrofolate reductase</fullName>
            <ecNumber evidence="10">1.5.1.20</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_0032</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2 10">
            <text>(6S)-5-methyl-5,6,7,8-tetrahydrofolate + NAD(+) = (6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:19821"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:18608"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.5.1.20"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>(6S)-5-methyl-5,6,7,8-tetrahydrofolate + NADP(+) = (6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:19817"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:18608"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.5.1.20"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3 10">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="4 10">One-carbon metabolism; tetrahydrofolate interconversion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 10">Belongs to the methylenetetrahydrofolate reductase family.</text>
    </comment>
    <dbReference type="EC" id="1.5.1.20" evidence="10"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58612.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900318.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0032"/>
    <dbReference type="EnsemblBacteria" id="SHG58612">
        <property type="protein sequence ID" value="SHG58612"/>
        <property type="gene ID" value="SAMN05444003_0032"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00193"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106312">
        <property type="term" value="F:methylenetetrahydrofolate reductase NADH activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106313">
        <property type="term" value="F:methylenetetrahydrofolate reductase NADPH activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009086">
        <property type="term" value="P:methionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035999">
        <property type="term" value="P:tetrahydrofolate interconversion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00537">
        <property type="entry name" value="MTHFR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029041">
        <property type="entry name" value="FAD-linked_oxidoreductase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003171">
        <property type="entry name" value="Mehydrof_redctse-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004620">
        <property type="entry name" value="MTHF_reductase_bac"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02219">
        <property type="entry name" value="MTHFR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51730">
        <property type="entry name" value="SSF51730"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00676">
        <property type="entry name" value="fadh2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 10" id="KW-0274">FAD</keyword>
    <keyword evidence="6 10" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="9" id="KW-0520">NAD</keyword>
    <keyword evidence="8 10" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000431"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001287"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00006743"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG58612.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="288" mass="30968" checksum="DE984A61CBED4DC1" modified="2017-03-15" version="1">MTQPAVSFEFFPPKSLKASFRLWECVSTLAPLDPTFVSVTYGAGGTTRKLTHEAVVALRDQMDLPVAAHLTCVDATRVETDKILDGYAAAGVTDIVALRGDAPKGTNAFTPHPEGFQDSIELIETIAKRGTFNITVGAYPEKHPEAASTKADIEFLKRKVDAGATRAITQFFFEAETFFRFRDACADAGITAPILPGILPVENWAGAKKFAESCGTSIPPLIADAFANAERDGTSDLLATALASELCDDLIQGGVEHLHFYTLNKPELTRDVCHALGVTPKARLQKVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L1J8</accession>
    <name>A0A1M5L1J8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Aminotransferase</fullName>
            <ecNumber evidence="1">2.6.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0041</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.-" evidence="1"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58800.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900320.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0041"/>
    <dbReference type="EnsemblBacteria" id="SHG58800">
        <property type="protein sequence ID" value="SHG58800"/>
        <property type="gene ID" value="SAMN05444003_0041"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901605">
        <property type="term" value="P:alpha-amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004838">
        <property type="entry name" value="NHTrfase_class1_PyrdxlP-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00105">
        <property type="entry name" value="AA_TRANSFER_CLASS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="2">
        <location>
            <begin position="32"/>
            <end position="392"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG58800.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="400" mass="43141" checksum="5D11B984A5C7FB80" modified="2017-03-15" version="1">MTFLSATLNRVKPSPTIAVTTKAAELKAAGRDIIALGAGEPDFDTPEHIQKAGQQAISEGKTRYTAVDGVPELKEAICAKFQRDNDLSYETAQVTVGTGGKQVLYNAFMATLNAGDEVIIPAPYWVSYPDMVLLAGGTPVIVEATLENSFKITAEQLRNAITPQTKWFLFNSPSNPTGAGYSWDELKALTDILVENPHVWIITDDMYEHLAFGNFKFCTPAQVEPRLYERSLTVNGVSKAYAMTGWRIGYAAGPEELIKAMRKVQSQSTSNPSSIGQYAALEALNGPQDFLADNAKLFQRRRDLVVDALNGCPGISCPRPEGAFYVYPSIAGCIGKTSASGVKIETDEDFATALLEETGVAVVFGAAFGVSPNFRVSYATSDAQLTEACARIKVFCEGLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L9X2</accession>
    <name>A0A1M5L9X2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, AsnC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0158</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898520.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0158"/>
    <dbReference type="EnsemblBacteria" id="SHG61223">
        <property type="protein sequence ID" value="SHG61223"/>
        <property type="gene ID" value="SAMN05444003_0158"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000485">
        <property type="entry name" value="AsnC-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019888">
        <property type="entry name" value="Tscrpt_reg_AsnC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019887">
        <property type="entry name" value="Tscrpt_reg_AsnC/Lrp_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01037">
        <property type="entry name" value="AsnC_trans_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00033">
        <property type="entry name" value="HTHASNC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00344">
        <property type="entry name" value="HTH_ASNC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50956">
        <property type="entry name" value="HTH_ASNC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH asnC-type" evidence="4">
        <location>
            <begin position="4"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG61223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="150" mass="16870" checksum="07079317710880EA" modified="2017-03-15" version="1">MSKLDNISAAILRELERDGRISNLTLADKVGLSPSACLRRVQDLEKRGIIRGYRARLDPRQTGRDYVVYVAVGLAEHTKDAQETFERAMQRADEVTECHNVAGVFEYMLRVEVADLPAYKAFHTDTLGTVPHVRSITSYMVMGSPKDMRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LB13</accession>
    <name>A0A1M5LB13_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0198</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62207.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898575.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG62207">
        <property type="protein sequence ID" value="SHG62207"/>
        <property type="gene ID" value="SAMN05444003_0198"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="94"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG62207.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="126" mass="14182" checksum="7607167426D10A12" modified="2017-03-15" version="1">MYEYQVIAAPNGRNSFGLRKNAARQMQELNDLLNSMSTDHWEYMGDREDGRQMVFARVVQSLENGYPPKVRPVRQASMDKPIVVRRVRPKGIEINPEPAFKSKQPAAANTQAEIDPPKVVALGSKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LBF5</accession>
    <name>A0A1M5LBF5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0179</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61743.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898546.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG61743">
        <property type="protein sequence ID" value="SHG61743"/>
        <property type="gene ID" value="SAMN05444003_0179"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="32"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="63"/>
            <end position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG61743.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="96" mass="10324" checksum="80D7500658C7369C" modified="2017-03-15" version="1">MTDIFVLSGMIAAAMVPFAIMAFWMRRGRTGYALTLISILGAAFVIFLYGVQTPIGLTPVQAYSFALLFALPAVLGAAGGGLLGWLLRKRDDRKTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LBH7</accession>
    <name>A0A1M5LBH7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Deoxyribodipyrimidine photo-lyase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0208</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62452.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898592.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0208"/>
    <dbReference type="EnsemblBacteria" id="SHG62452">
        <property type="protein sequence ID" value="SHG62452"/>
        <property type="gene ID" value="SAMN05444003_0208"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036134">
        <property type="entry name" value="Crypto/Photolyase_FAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005101">
        <property type="entry name" value="Cryptochr/Photolyase_FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002081">
        <property type="entry name" value="Cryptochrome/DNA_photolyase_1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11455">
        <property type="entry name" value="PTHR11455"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03441">
        <property type="entry name" value="FAD_binding_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48173">
        <property type="entry name" value="SSF48173"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0274">FAD</keyword>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0456">Lyase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD_binding_7" evidence="4">
        <location>
            <begin position="73"/>
            <end position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF03441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG62452.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="396" mass="44485" checksum="99114E1C4E4042B4" modified="2017-03-15" version="1">MIEFPPSRATALDRLKSFAPKAGSSYARLRNFDLTNHPHVSALSSYLTHRVISEEEVLIEVLRHHTAKDAEKFIQEVCWRTYWKGVLERRPALWDRYKADLNASWNQIQTQSGLRSEWEDACLGRTGIDAFDHWANELVETGYLHNHARMWFASIWIFTLRLPWTLGADFFMRHLLDADAASNTLSWRWVAGLQTTGKTYLARPDNIAKYTQDRFRPRGLAEFAAPLDNPNLPPLGPAPIDSGEGFDGFALHISDLSTDTLAQPNCPIAVLVPSSTEGNLRPSGLQQDFKTALANDACRRIAKLGETPTLVNSADQLNDWVASHSIRRLGFHHLTIGPSHDHISPWLNAIETAGVSLQPQVRDYDSIGWSAATAGFFKFKSIIPRLLDGLRQPSLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LE47</accession>
    <name>A0A1M5LE47_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Anthranilate phosphoribosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0241</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63288.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898655.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0241"/>
    <dbReference type="EnsemblBacteria" id="SHG63288">
        <property type="protein sequence ID" value="SHG63288"/>
        <property type="gene ID" value="SAMN05444003_0241"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004048">
        <property type="term" value="F:anthranilate phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000162">
        <property type="term" value="P:tryptophan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1030.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005940">
        <property type="entry name" value="Anthranilate_Pribosyl_Tfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017459">
        <property type="entry name" value="Glycosyl_Trfase_fam3_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036320">
        <property type="entry name" value="Glycosyl_Trfase_fam3_N_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035902">
        <property type="entry name" value="Nuc_phospho_transferase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43285">
        <property type="entry name" value="PTHR43285"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02885">
        <property type="entry name" value="Glycos_trans_3N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47648">
        <property type="entry name" value="SSF47648"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52418">
        <property type="entry name" value="SSF52418"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glycos_trans_3N" evidence="3">
        <location>
            <begin position="14"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG63288.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="311" mass="33695" checksum="C7D9F5C7E8F3B9D4" modified="2017-03-15" version="1">MSLAPYVQIVARGKGRGRSMSFAEAVDAMAIILNGEAEPEALGAVLMVMRLREETAEEISGFTVGLRNHVKNILPKADLDWPSYAAGRTRGSPLFILAARLVSQAGYSVSMHGWNSHQQASASVRGALKWAAPTVRYSAIEDLCPEAFALLKLRDTFGLRSCINTVLRMWNPSRAPASVQGVFHPSYRGLQAEAAQIIDENDLVVIKGGGGEFERNPAKRVAIYGWMAGQFLDQSAPALTPEKRMLHDVNQPIDLGAVWHGKNQDPLAEASVTGTAAIALWSLNAASTLSDAQSMAEALWHRRHNPESLSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LGI6</accession>
    <name>A0A1M5LGI6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Sec-independent protein translocase protein TatB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">tatB</name>
        <name evidence="10" type="ORF">SAMN05444003_0275</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">The Tat system comprises two distinct complexes: a TatABC complex, containing multiple copies of TatA, TatB and TatC subunits, and a separate TatA complex, containing only TatA subunits. Substrates initially bind to the TatABC complex, which probably triggers association of the separate TatA complex to form the active translocon.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
            <topology evidence="8">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the TatB family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64118.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898708.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0275"/>
    <dbReference type="EnsemblBacteria" id="SHG64118">
        <property type="protein sequence ID" value="SHG64118"/>
        <property type="gene ID" value="SAMN05444003_0275"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033281">
        <property type="term" value="C:TAT protein transport complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008320">
        <property type="term" value="F:protein transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043953">
        <property type="term" value="P:protein transport by the Tat complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00237">
        <property type="entry name" value="TatB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003369">
        <property type="entry name" value="TatA/B/E"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018448">
        <property type="entry name" value="TatB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02416">
        <property type="entry name" value="TatA_B_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01410">
        <property type="entry name" value="tatB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="4 8" id="KW-0653">Protein transport</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8" id="KW-0811">Translocation</keyword>
    <keyword evidence="3 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1 8" id="KW-0813">Transport</keyword>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="87"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="94"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="9">
        <location>
            <begin position="142"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG64118.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="174" mass="18565" checksum="312EBCEC816E52C2" modified="2017-03-15" version="1">MFGLSWGELMVVGVVALIVVGPKDLPGLFRSVGEFTGKARRMAREFSRAMEQAAEDSGVNDINKTIRAATNPTKFGTDAIKDSVTSTFKEGSETAKLSEQRQADKKKIDEAMAKAATERMEREAAEKAAAEATPKPAAKPKPKTATKAKPKVAAKPKAAPKAKAKPKPKPKAET</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LJH1</accession>
    <name>A0A1M5LJH1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Monosaccharide ABC transporter membrane protein, CUT2 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0332</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65262.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898776.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0332"/>
    <dbReference type="EnsemblBacteria" id="SHG65262">
        <property type="protein sequence ID" value="SHG65262"/>
        <property type="gene ID" value="SAMN05444003_0332"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="26"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="106"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="132"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="170"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="223"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="251"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="302"/>
            <end position="322"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG65262.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="327" mass="34982" checksum="B0F1317EF7B295AA" modified="2017-03-15" version="1">MTDTTRFIPDRLQSPLERRLKSWETLLLAVAVSIFIVNSFTSPYFLNAWNLSDMTFNFTEKAMIAFAMALLIIAGEIDLSVASIIALASTAMGAAVQIGIGTPGLVLIGLGVGLICGAFNGFLVTKLGLPSIVVTIGTMSLFRGISYIILGDQAYRGYPSDFSFFGQGYVFWVISFEFVLFAIIALIYFVILHNTNFGRAVYAIGNNPVGAEFSGIRVARVKFILFLLTGLMSGVAAVCLTSRLASTRPSIAFGWELEIVTMVVLGGVNILGGSGTIPGVVIAAFVMGLVTFGLGLLNVPGIVMSIVIGLLLIGVIALPRLWEKWKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LL68</accession>
    <name>A0A1M5LL68_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ca-activated chloride channel family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0358</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65801.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0358"/>
    <dbReference type="EnsemblBacteria" id="SHG65801">
        <property type="protein sequence ID" value="SHG65801"/>
        <property type="gene ID" value="SAMN05444003_0358"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13519">
        <property type="entry name" value="VWA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00327">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50234">
        <property type="entry name" value="VWFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013268515" evidence="1">
        <location>
            <begin position="21"/>
            <end position="861"/>
        </location>
    </feature>
    <feature type="domain" description="VWFA" evidence="2">
        <location>
            <begin position="25"/>
            <end position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG65801.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="861" mass="91642" checksum="389550605049C6B1" modified="2017-03-15" version="1">MMKRPISCAAAVMIATSAMAQEQPNTILVLDGSGSMWGQIDGVAKITIAQDVVGQLLGTIPADQGLGLTVYGHRERGNCTDIETIVAPAPGTAGAIRDAVSGIKPLGKTPMTDAVIAAAQALRYTEDKATVILVSDGVETCNPDPCAAARLLEEAGIDFTAHVVGFDVGSDPEALAQMQCIAGETGGQFLTADNAGQLAEALTQVAAAPEPEPEPEPIIGEVTFEARLDTEDGPLIDTPLLWTLNPLPENVAAEEMGNELVFEMEQGSYEVTAYWLAQEVEQTKQFIATANPRTVVMVFETPAQTATVTAPETAPVGSTIEIGWNGPDEERDVIGVTEASVNDTSYVYRFSNSVRTDTGNPVSLLMPTTPGDYVIEYSLGATNERIGEQAIILTPVEASIFAPETVEAGSQIEVGWDGPGYDRDYIGITAADYKDTSYPYRFVTNTARLDDTRVAKLTAPTEPGSYVIEYAFGQDNSRLAAVPLEVVAVSASLTAPDSVEAGSTFEVSWSGPGYDRDYIGITAADAEDIGYVYRFATDIVRVSDGDVLNVRAPVEPGSYVLEYVINQDHSRLASVPLEVVDVQAGVTAPASVPAGSTFEVEWSGPGYERDYIGITAADAEDIGYVYRFATDIKRVSDSDGNTVRVRAPADPGQYIVEYVVNQDHSRLAFAPIEVTALSASVTAPNTAPAGSVIEVAWTGPGYERDYVGVTAADVEDIGYVYRFATTTKRVSEGDVLNVQLPTMPGDYVIEYVLDQDNSRLASSTIEVTPVTATLTAPSTGAAGSTIEVAWTGPAYSRDYIGVTAADYEDTNYPYRFSSDTLRVDGGDVLNIALPEEPGLYVIEYVFGLDNTRLVSVPITVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LMS6</accession>
    <name>A0A1M5LMS6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Parvulin-like PPIase</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Peptidyl-prolyl cis-trans isomerase plp</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Rotamase plp</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0382</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PpiC/parvulin rotamase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66348.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898856.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0382"/>
    <dbReference type="EnsemblBacteria" id="SHG66348">
        <property type="protein sequence ID" value="SHG66348"/>
        <property type="gene ID" value="SAMN05444003_0382"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046357">
        <property type="entry name" value="PPIase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000297">
        <property type="entry name" value="PPIase_PpiC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027304">
        <property type="entry name" value="Trigger_fact/SurA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13145">
        <property type="entry name" value="Rotamase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109998">
        <property type="entry name" value="SSF109998"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0413">Isomerase</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="9"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="domain" description="PpiC" evidence="6">
        <location>
            <begin position="243"/>
            <end position="362"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00018370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00030642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00031484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF13145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG66348.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="613" mass="66705" checksum="DD3DC084E8DDDB26" modified="2017-03-15" version="1">MAEQKKPRYFLWAIMILLCVGLLGFGTGGLGNNIRSIGSVGNKDLSVNAYQNALNQQIRAFEAQIGTRVSFPEAQSFGLVNAAQAQLISSRALDNEATEIGISVGDERVRQEVLRVPAFRGLDGNFDRETYRQALQRNGLTEADFETSIREDMARTLLQASVIGGVEAPDAYADALVQFIGEQRSFTWADVTEDDLTAPIPGPTDADLQTFYDENPELFTLPEAREITYTWLTPNMIQDSLSVDETALRELYDSRVEEYVRPERRLVERLAFVDPAAAEAAKQRIDAGELDFDALVAERGLDLADIDLGDVTIDDLGSAGEAVFGANPGDVVGPINSTIGPALFRMNAVLAAEEATFEDVRPQLEEELSADRARRVIDASSEGINDLLAGGATLEDLEAETDMELGTISVTPETRDGIAAYEAFRSAAATVEEGDFPVLDNLADGGIFSLRLDGVTPPTLQPFDDVRDEVTNAWNAQRKQQAIMERAEEIAATIEPLTDFTAIGLDAMVENNLTRRSFVEGTPPGFMVDVFEMDIATTRVIENTDGAIIVRLDGILPPDADDPAVAAEREQILASTAAGIAQDVFEAYGNEVQSRTDIQLDQNIINAIHAQFQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LPC1</accession>
    <name>A0A1M5LPC1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Outer membrane protein beta-barrel domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0402</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66806.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898886.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG66806">
        <property type="protein sequence ID" value="SHG66806"/>
        <property type="gene ID" value="SAMN05444003_0402"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011250">
        <property type="entry name" value="OMP/PagP_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027385">
        <property type="entry name" value="OMP_b-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13505">
        <property type="entry name" value="OMP_b-brl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56925">
        <property type="entry name" value="SSF56925"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012454708" evidence="1">
        <location>
            <begin position="22"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="domain" description="OMP_b-brl" evidence="2">
        <location>
            <begin position="41"/>
            <end position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG66806.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="203" mass="21276" checksum="41924E59DF1E8026" modified="2017-03-15" version="1">MVRNSLIISAIALGAATTAQAGSLADPAVEAAPTPVAVVPVVAPTPRGNDWTGFYAGAQLGYGQLESEAFDEDAEDLLYGVHAGYNYDFGNFVIGGEIDYDWTQISDSGSGIDLDNVARLKLRAGYDAGEFLPYVTVGAARAFTGGALDANDDGQFFGVGLDYQVGSNLRVGGEVLRHEFQDFDGSGADIEATTIAARVSYNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LPW3</accession>
    <name>A0A1M5LPW3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Xanthine-guanine phosphoribosyltransferase</fullName>
            <shortName evidence="3">XGPRT</shortName>
            <ecNumber evidence="3">2.4.2.22</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Xanthine phosphoribosyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">gpt</name>
        <name evidence="5" type="ORF">SAMN05444003_0384</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Purine salvage pathway enzyme that catalyzes the transfer of the ribosyl-5-phosphate group from 5-phospho-alpha-D-ribose 1-diphosphate (PRPP) to the N9 position of the 6-oxopurines guanine and xanthine to form the corresponding ribonucleotides GMP (guanosine 5'-monophosphate) and XMP (xanthosine 5'-monophosphate), with the release of PPi. To a lesser extent, also acts on hypoxanthine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>diphosphate + GMP = 5-phospho-alpha-D-ribose 1-diphosphate + guanine</text>
            <dbReference type="Rhea" id="RHEA:25424"/>
            <dbReference type="ChEBI" id="CHEBI:16235"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>diphosphate + IMP = 5-phospho-alpha-D-ribose 1-diphosphate + hypoxanthine</text>
            <dbReference type="Rhea" id="RHEA:17973"/>
            <dbReference type="ChEBI" id="CHEBI:17368"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>diphosphate + XMP = 5-phospho-alpha-D-ribose 1-diphosphate + xanthine</text>
            <dbReference type="Rhea" id="RHEA:10800"/>
            <dbReference type="ChEBI" id="CHEBI:17712"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57464"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="EC" id="2.4.2.22"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Purine metabolism; GMP biosynthesis via salvage pathway; GMP from guanine: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3">Purine metabolism; XMP biosynthesis via salvage pathway; XMP from xanthine: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cell membrane</location>
            <topology evidence="3">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the purine/pyrimidine phosphoribosyltransferase family. XGPT subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.22" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66393.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898858.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0384"/>
    <dbReference type="EnsemblBacteria" id="SHG66393">
        <property type="protein sequence ID" value="SHG66393"/>
        <property type="gene ID" value="SAMN05444003_0384"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00602">
        <property type="reaction ID" value="UER00658"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00909">
        <property type="reaction ID" value="UER00887"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052657">
        <property type="term" value="F:guanine phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004422">
        <property type="term" value="F:hypoxanthine phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000310">
        <property type="term" value="F:xanthine phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032263">
        <property type="term" value="P:GMP salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006166">
        <property type="term" value="P:purine ribonucleoside salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032265">
        <property type="term" value="P:XMP salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01903">
        <property type="entry name" value="XGPRT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023747">
        <property type="entry name" value="Xanthine_Guanine_PRibTrfase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39563">
        <property type="entry name" value="PTHR39563"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00156">
        <property type="entry name" value="Pribosyltran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3 5" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2 3" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0660">Purine salvage</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pribosyltran" evidence="4">
        <location>
            <begin position="15"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="region of interest" description="5-phospho-alpha-D-ribose 1-diphosphate binding" evidence="3">
        <location>
            <begin position="47"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="region of interest" description="5-phospho-alpha-D-ribose 1-diphosphate binding" evidence="3">
        <location>
            <begin position="102"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="103"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="106"/>
            <end position="110"/>
        </location>
        <ligand>
            <name>GMP</name>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="106"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="148"/>
            <end position="149"/>
        </location>
        <ligand>
            <name>GMP</name>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG66393.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="167" mass="18732" checksum="E969DE526A815145" modified="2017-03-15" version="1">MTDRLPHEKGFHISWDQIHRDSRALAWRLDGQGPGDGSWKAIVAITRGGMAPAMIIARELDVRTVDTISIKSYDHQKQSDAKVLKEPDAEMMGDGTGILIIDDLVDSGKTLEVVRARYPNAHFATVYAKPKGEPQVDTFITGVSQDTWIFFPWDMALQYVEPYRGTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LPW6</accession>
    <name>A0A1M5LPW6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized conserved protein, DUF1697 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0410</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66996.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0410"/>
    <dbReference type="EnsemblBacteria" id="SHG66996">
        <property type="protein sequence ID" value="SHG66996"/>
        <property type="gene ID" value="SAMN05444003_0410"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012545">
        <property type="entry name" value="DUF1697"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36439">
        <property type="entry name" value="PTHR36439"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08002">
        <property type="entry name" value="DUF1697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF008502">
        <property type="entry name" value="UCP008502"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG66996.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="173" mass="18812" checksum="785BA6CFAF2B3233" modified="2017-03-15" version="1">MTMNTTWIALLRGINVGGGNKLPMADLRAICEGIGWQNIRTYIASGNVVFEADGAAEALASKLHQNLPLDVPVLVLSAHDLANRLAHCPFPNGAGNTVHGFFCLDAPDVDEDVIAQFATTEKVIVQGHTVWLYAPDGFGRSKLAENFHRVVTSTTYTARNFNTIRKLVEMSCD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LQ36</accession>
    <name>A0A1M5LQ36_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Pyridoxine/pyridoxamine 5'-phosphate oxidase</fullName>
            <ecNumber evidence="6">1.4.3.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">PNP/PMP oxidase</fullName>
            <shortName evidence="6">PNPOx</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Pyridoxal 5'-phosphate synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">pdxH</name>
        <name evidence="10" type="ORF">SAMN05444003_0387</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>H2O + O2 + pyridoxamine 5'-phosphate = H2O2 + NH4(+) + pyridoxal 5'-phosphate</text>
            <dbReference type="Rhea" id="RHEA:15817"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:16240"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:58451"/>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
            <dbReference type="EC" id="1.4.3.5"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>O2 + pyridoxine 5'-phosphate = H2O2 + pyridoxal 5'-phosphate</text>
            <dbReference type="Rhea" id="RHEA:15149"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:16240"/>
            <dbReference type="ChEBI" id="CHEBI:58589"/>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
            <dbReference type="EC" id="1.4.3.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6 7">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
        <text evidence="6 7">Binds 1 FMN per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="6">Cofactor metabolism; pyridoxal 5'-phosphate salvage; pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="6">Cofactor metabolism; pyridoxal 5'-phosphate salvage; pyridoxal 5'-phosphate from pyridoxine 5'-phosphate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the pyridoxamine 5'-phosphate oxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="1.4.3.5" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898861.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0387"/>
    <dbReference type="EnsemblBacteria" id="SHG66463">
        <property type="protein sequence ID" value="SHG66463"/>
        <property type="gene ID" value="SAMN05444003_0387"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA01068">
        <property type="reaction ID" value="UER00304"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004733">
        <property type="term" value="F:pyridoxamine-phosphate oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008615">
        <property type="term" value="P:pyridoxine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01629">
        <property type="entry name" value="PdxH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000659">
        <property type="entry name" value="Pyridox_Oxase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019740">
        <property type="entry name" value="Pyridox_Oxase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011576">
        <property type="entry name" value="Pyridox_Oxase_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019576">
        <property type="entry name" value="Pyridoxamine_oxidase_dimer_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10851">
        <property type="entry name" value="PTHR10851"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10590">
        <property type="entry name" value="PNP_phzG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01243">
        <property type="entry name" value="Putative_PNPOx"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000190">
        <property type="entry name" value="Pyd_amn-ph_oxd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00558">
        <property type="entry name" value="pdxH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01064">
        <property type="entry name" value="PYRIDOX_OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="3 6 7" id="KW-0288">FMN</keyword>
    <keyword evidence="4 6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5 6" id="KW-0664">Pyridoxine biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Putative_PNPOx" evidence="8">
        <location>
            <begin position="22"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="domain" description="PNP_phzG_C" evidence="9">
        <location>
            <begin position="159"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="178"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <begin position="49"/>
            <end position="54"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="54"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <begin position="64"/>
            <end position="65"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="71"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="93"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="111"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="115"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="119"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <begin position="128"/>
            <end position="129"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="172"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="182"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007301"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023096"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01629"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000190-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01243"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF10590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG66463.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="201" mass="22719" checksum="9AE984F0F9B4B3CB" modified="2017-03-15" version="1">MTDRKDIFAGENPFELARSWLSEAEASEINDPNAIALSTVDADGLPNVRMVLLKSIEDDAFVFYTNYGSAKGQEIEQSGKVAFVLHSKSLRRQLRVRGIVEKEDGEVADAYYKSRGLKSRLGAWASDQSRPLESRAALVAKVAKVTATHGINPERPPFWGGFRIFPLEVEFWADGDHRLHDRFRWRRQAIGDTWEISRLSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LR37</accession>
    <name>A0A1M5LR37_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Aspartate/glutamate leucyltransferase</fullName>
            <ecNumber evidence="4">2.3.2.29</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">bpt</name>
        <name evidence="7" type="ORF">SAMN05444003_0431</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>L-leucyl-tRNA(Leu) + N-terminal L-aspartyl-[protein] = H(+) + N-terminal L-leucyl-L-aspartyl-[protein] + tRNA(Leu)</text>
            <dbReference type="Rhea" id="RHEA:50420"/>
            <dbReference type="Rhea" id="RHEA-COMP:9613"/>
            <dbReference type="Rhea" id="RHEA-COMP:9622"/>
            <dbReference type="Rhea" id="RHEA-COMP:12669"/>
            <dbReference type="Rhea" id="RHEA-COMP:12674"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:64720"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78494"/>
            <dbReference type="ChEBI" id="CHEBI:133042"/>
            <dbReference type="EC" id="2.3.2.29"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>L-leucyl-tRNA(Leu) + N-terminal L-glutamyl-[protein] = H(+) + N-terminal L-leucyl-L-glutamyl-[protein] + tRNA(Leu)</text>
            <dbReference type="Rhea" id="RHEA:50412"/>
            <dbReference type="Rhea" id="RHEA-COMP:9613"/>
            <dbReference type="Rhea" id="RHEA-COMP:9622"/>
            <dbReference type="Rhea" id="RHEA-COMP:12664"/>
            <dbReference type="Rhea" id="RHEA-COMP:12668"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:64721"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78494"/>
            <dbReference type="ChEBI" id="CHEBI:133041"/>
            <dbReference type="EC" id="2.3.2.29"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the R-transferase family. Bpt subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.29" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67491.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900369.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0431"/>
    <dbReference type="EnsemblBacteria" id="SHG67491">
        <property type="protein sequence ID" value="SHG67491"/>
        <property type="gene ID" value="SAMN05444003_0431"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004057">
        <property type="term" value="F:arginyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008914">
        <property type="term" value="F:leucyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071596">
        <property type="term" value="P:ubiquitin-dependent protein catabolic process via the N-end rule pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00689">
        <property type="entry name" value="Bpt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017138">
        <property type="entry name" value="Asp_Glu_LeuTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030700">
        <property type="entry name" value="N-end_Aminoacyl_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007472">
        <property type="entry name" value="N-end_Aminoacyl_Trfase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007471">
        <property type="entry name" value="N-end_Aminoacyl_Trfase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21367">
        <property type="entry name" value="PTHR21367"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04377">
        <property type="entry name" value="ATE_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04376">
        <property type="entry name" value="ATE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037208">
        <property type="entry name" value="ATE_pro_prd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="1 4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="ATE_N" evidence="5">
        <location>
            <begin position="17"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="domain" description="ATE_C" evidence="6">
        <location>
            <begin position="108"/>
            <end position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00689"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04376"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04377"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG67491.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="274" mass="30914" checksum="54A473392CCCF32E" modified="2017-03-15" version="1">MRHTLPIAPQFYVTAPQPCPYLDGRMERKLFTALQGDSASELNDTLSKQGFRRSQNVLYRPSCSDCAACMSARIDVARFQPSRSQKRILKRNAHLKRRATSPWATEDQYDLFRRYLDGRHADGGMADMDMFEFAAMVEETPIRSRVVEYSDLTSDNPAPVAACLTDILDDGLSMVYSFFEPEMERNSPGTYLILDHIEIARELGLPYVYLGYWVPGSTKMGYKANFSGIEVFTDGRWRRLKDPKEYSSAVDPLSTEPIAEQVAKITLPGAEPAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LW17</accession>
    <name>A0A1M5LW17_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Chromate transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_0511</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the chromate ion transporter (CHR) (TC 2.A.51) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69294.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899035.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0511"/>
    <dbReference type="EnsemblBacteria" id="SHG69294">
        <property type="protein sequence ID" value="SHG69294"/>
        <property type="gene ID" value="SAMN05444003_0511"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015109">
        <property type="term" value="F:chromate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014047">
        <property type="entry name" value="Chr_Tranpt_l_chain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003370">
        <property type="entry name" value="Chromate_transpt"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02417">
        <property type="entry name" value="Chromate_transp"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004810">
        <property type="entry name" value="ChrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00937">
        <property type="entry name" value="2A51"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="78"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="107"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="139"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="191"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="291"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="330"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="371"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="398"/>
            <end position="414"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005262"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG69294.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="415" mass="44033" checksum="52DC55F34877FD33" modified="2017-03-15" version="1">MPSYADLFRIFGRIGLQSFGGPAAQIALMHKELVENRDWLTEEEFLRALSFCMLLPGPEAMQLATYSGWQQRGITGGLIAGGLFVLPGAIVIAMLAIAYGTFGNQPWAQSLFLGIQAAVVVIVVDALRKVSQKALTGPLAFVIAALSFFSLYVFALPFPLVIAVAACIGWFGFKTLPPNGQVKPVSRKGVLPVIVISGLIWALPLVLAIALDANFLTEIGLFFSKLAVVSFGGAYAVLAYMTQVVVTDFGWLAPNEMLDALGLAETTPGPLILVTQFVAILAGLSEGGIGIAIAAGLMTLWVTFVPCFIWIFAGAPYIEWLSGQPRLQAALKGITAAVVGVIANLSLWFAVQVFFDDVTIGPFNVLSPNLSSINIAAVMVAVLAAVILLFAKQPLWRVLILCSLASFGLGWAIGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LYQ9</accession>
    <name>A0A1M5LYQ9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Fe-S cluster assembly protein SufD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0554</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0051 (ycf24) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899097.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0554"/>
    <dbReference type="EnsemblBacteria" id="SHG70244">
        <property type="protein sequence ID" value="SHG70244"/>
        <property type="gene ID" value="SAMN05444003_0554"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016226">
        <property type="term" value="P:iron-sulfur cluster assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000825">
        <property type="entry name" value="SUF_FeS_clus_asmbl_SufBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037284">
        <property type="entry name" value="SUF_FeS_clus_asmbl_SufBD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011542">
        <property type="entry name" value="SUF_FeS_clus_asmbl_SufD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045595">
        <property type="entry name" value="SufBD_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43575">
        <property type="entry name" value="PTHR43575"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01458">
        <property type="entry name" value="SUFBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19295">
        <property type="entry name" value="SufBD_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101960">
        <property type="entry name" value="SSF101960"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SufBD_N" evidence="2">
        <location>
            <begin position="85"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF19295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG70244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="428" mass="46191" checksum="51265F1EA2D751B9" modified="2017-03-15" version="1">MALPQMKAALTATRLDGLTLPASNGWGNAARESALARVREMGLPTRRDEYWKYTDPTSLTSVDAPEAALFHNDEGPLFDAVDRVKIVFVDGVFDEAASDDLSAEGVTIERLAVAMDADIHWAKDLYGVLEANGQSPVERPLAALNTALAQDGVIIHATGVASKPINLIYLHNDVASDVAIHNVVKVDEGASVTLLETGPAGARLSKGLEVDIAKGGAFHHVRAQGRDHERRAVTHCFARVASEATFKSFTLTANGVLTRNECVIDIVGDDAVAHVAGACVGDGKDFHHDDTVFITHDAVNCESRQVFKKVLRNGASGVFQGKILVKEGAQKTDGYQISQSLLLDDDSQFLAKPELEIYADDVACSHGSTSGAIDETALFYLRSRGVNHRDATNLLTLAFLAEALEEIEDEELAEDIRSRLENWLARHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M073</accession>
    <name>A0A1M5M073_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0559</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70329.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899105.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG70329">
        <property type="protein sequence ID" value="SHG70329"/>
        <property type="gene ID" value="SAMN05444003_0559"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012883740" evidence="1">
        <location>
            <begin position="28"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG70329.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="63" mass="6709" checksum="A9858BC1CB55654F" modified="2017-03-15" version="1">MNFVVRFTGSSIVGAVLFAFIPSSAIADCAIAMDVSSYFEKLEMANIVTQYGNQVVRATDGAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M091</accession>
    <name>A0A1M5M091_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">tRNA dimethylallyltransferase</fullName>
            <ecNumber evidence="5">2.5.1.75</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Dimethylallyl diphosphate:tRNA dimethylallyltransferase</fullName>
            <shortName evidence="5">DMAPP:tRNA dimethylallyltransferase</shortName>
            <shortName evidence="5">DMATase</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">Isopentenyl-diphosphate:tRNA isopentenyltransferase</fullName>
            <shortName evidence="5">IPP transferase</shortName>
            <shortName evidence="5">IPPT</shortName>
            <shortName evidence="5">IPTase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">miaA</name>
        <name evidence="9" type="ORF">SAMN05444003_0579</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 5 7">Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 5 6">
            <text>adenosine(37) in tRNA + dimethylallyl diphosphate = diphosphate + N(6)-dimethylallyladenosine(37) in tRNA</text>
            <dbReference type="Rhea" id="RHEA:26482"/>
            <dbReference type="Rhea" id="RHEA-COMP:10162"/>
            <dbReference type="Rhea" id="RHEA-COMP:10375"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57623"/>
            <dbReference type="ChEBI" id="CHEBI:74411"/>
            <dbReference type="ChEBI" id="CHEBI:74415"/>
            <dbReference type="EC" id="2.5.1.75"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="5">Monomer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 5 8">Belongs to the IPP transferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.75" evidence="5"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70752.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899130.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0579"/>
    <dbReference type="EnsemblBacteria" id="SHG70752">
        <property type="protein sequence ID" value="SHG70752"/>
        <property type="gene ID" value="SAMN05444003_0579"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052381">
        <property type="term" value="F:tRNA dimethylallyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008033">
        <property type="term" value="P:tRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00185">
        <property type="entry name" value="IPP_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039657">
        <property type="entry name" value="Dimethylallyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018022">
        <property type="entry name" value="IPT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11088">
        <property type="entry name" value="PTHR11088"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00174">
        <property type="entry name" value="miaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 8" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 6" id="KW-0819">tRNA processing</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="17"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="15"/>
            <end position="22"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="site" description="Interaction with substrate tRNA" evidence="5">
        <location>
            <position position="100"/>
        </location>
    </feature>
    <feature type="site" description="Interaction with substrate tRNA" evidence="5">
        <location>
            <position position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001549"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003783"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003784"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003785"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG70752.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="293" mass="32584" checksum="5EB24395736B839D" modified="2017-03-15" version="1">MTLRIDPNKTVLIAGPTASGKSSLALMIAEAQGGLIVNADALQVYDGWRILTARPSLEDEQRAAHQFYGHLPYDVSYSVGDWLRDVKGLLGERLIIVGGTGLYFSALTEGLANIPETPTHIRATADGMVIETLLSEIDEATKDHVDIANRARVQRAWEVLQTTGRSLVDWQSETPAPLLPLQSCTPILLNAPKEWLTPRIEQRFDMMLEQGVLEEAREMSLNWDTSHPSSKAIGAQELIDHVNGRISLDEAREAVIIGTRQYAKRQRTWFRKRMTDWAQIDLSSTDLSTGIVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M2E8</accession>
    <name>A0A1M5M2E8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Zinc metalloprotease</fullName>
            <ecNumber evidence="9">3.4.24.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_0585</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 9">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the peptidase M50B family.</text>
    </comment>
    <dbReference type="EC" id="3.4.24.-" evidence="9"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70883.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0585"/>
    <dbReference type="EnsemblBacteria" id="SHG70883">
        <property type="protein sequence ID" value="SHG70883"/>
        <property type="gene ID" value="SAMN05444003_0585"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.42.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001478">
        <property type="entry name" value="PDZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041489">
        <property type="entry name" value="PDZ_6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036034">
        <property type="entry name" value="PDZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004387">
        <property type="entry name" value="Pept_M50_Zn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008915">
        <property type="entry name" value="Peptidase_M50"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42837">
        <property type="entry name" value="PTHR42837"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17820">
        <property type="entry name" value="PDZ_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02163">
        <property type="entry name" value="Peptidase_M50"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00228">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50156">
        <property type="entry name" value="SSF50156"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00054">
        <property type="entry name" value="TIGR00054"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="11" id="KW-0645">Protease</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6 9" id="KW-0862">Zinc</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="37"/>
            <end position="58"/>
        </location>
    </feature>
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        <location>
            <begin position="110"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="370"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="414"/>
            <end position="435"/>
        </location>
    </feature>
    <feature type="domain" description="PDZ" evidence="10">
        <location>
            <begin position="200"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU362031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM00228"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG70883.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="442" mass="47186" checksum="4D58DB84DAD7B936" modified="2017-03-15" version="1">MDLSQLLASTGDGVMTILFFIIALSVIVAIHEYGHYIVGRWCGISADVFSVGFGPTLLSRVDKRGTRWQIAAIPFGGYVKFAGDKNAASVGGEEVEGAGPARNTMLGAPLWARALTVAAGPIANFILAVFIFAGFFLIQGQPTAKLIVASQHELPVGFESELLAGDEILFVDGIDLMSSEGPYLDSLPDAQYRTYTIIRDGEQIEVSGPNPFVPRIASLLPRSAADDADLKIDDVITAIDGTSVYTFDQIIEGVEAGGGGEITLDVWRDGDVIQLELTPRRVDNPLPDGGFEQRLLIGVTGEYFFIPTTEPVGIVEAFSRAFGRLWFAIRLSLEGIWQVIVGGISTCNISGPIAIAEASGSMASQGATSYILFVGMISVAIGLFNLFPIPILDGGHLVFYAYEAIAGQKPTDRALRIFMSIGLSLIGALMIFAILNDLVLCP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M2W2</accession>
    <name>A0A1M5M2W2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Trk system potassium uptake protein TrkH</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_0615</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
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        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG71654.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899167.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0615"/>
    <dbReference type="EnsemblBacteria" id="SHG71654">
        <property type="protein sequence ID" value="SHG71654"/>
        <property type="gene ID" value="SAMN05444003_0615"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008324">
        <property type="term" value="F:cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006813">
        <property type="term" value="P:potassium ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003445">
        <property type="entry name" value="Cat_transpt"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02386">
        <property type="entry name" value="TrkH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0406">Ion transport</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="7"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="40"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="72"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="130"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="198"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="244"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="283"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="315"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="356"/>
            <end position="383"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="414"/>
            <end position="440"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="446"/>
            <end position="464"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="476"/>
            <end position="499"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG71654.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="506" mass="54203" checksum="E3A03CD1788E4864" modified="2017-03-15" version="1">MASALKKLPFFVVLMGLGSLIMMIPAIYGWATSDFVGMRVFFYGTILFGTLTLLVGLATAGYEPPNLARSQLLTLVAAFTVLPLMFAVPFAEATSNTSYADAWFEMVSSFTTTGATLFDTPGLISSTLHLWRAAVGWVGGFLVWVVAIALFAPMNLGGFEVRSLGGYGQQNQTSIAQIGKVADSSERLNRYAVDFAPIYFGLTVVLWVILIVLGETPSVAVIHAMSTISTSGISPIGGTYFSSAGFWGEVAIVVFFVFAISRLTFSRGFVGETENPLWKDPEVVVAGILIFLATTLLFVRHFVGSIDEASSDIADAARALWGSFFTVVSFLTTTGFESKYWDAATDWSGLQTPGLLLMGLALIGGGVATTAGGVKLLRVYALFRHSEREMDRLLHPSSVGGGGKDARRIRRQGAYISWIFFMLFAISIATVMLLLSLAGIQFERGMVLAVAALSTTGPLATIAAESPIDYAGLPVAARAILGAAMVLGRLETLALIALFNPDFWRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M6K8</accession>
    <name>A0A1M5M6K8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Glycerol uptake facilitator (Major Intrinsic Protein Family)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0664</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the MIP/aquaporin (TC 1.A.8) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72872.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899256.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0664"/>
    <dbReference type="EnsemblBacteria" id="SHG72872">
        <property type="protein sequence ID" value="SHG72872"/>
        <property type="gene ID" value="SAMN05444003_0664"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015267">
        <property type="term" value="F:channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1080.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023271">
        <property type="entry name" value="Aquaporin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034294">
        <property type="entry name" value="Aquaporin_transptr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000425">
        <property type="entry name" value="MIP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45724">
        <property type="entry name" value="PTHR45724"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00230">
        <property type="entry name" value="MIP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00783">
        <property type="entry name" value="MINTRINSICP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81338">
        <property type="entry name" value="SSF81338"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="32"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="83"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="123"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="148"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="189"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG72872.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="219" mass="22901" checksum="D3E07047C65741AE" modified="2017-03-15" version="1">MFQKLLAEGLGTAFLLIGVVGSGIMGEMLAGGNVAIALLANAITTGCILYVIITTLGPISGAHFNPAVTAYFTLRGEMKASEAAAYIPIQIAGGIVGVWLTHAMFDLQILQTSTTARTGGPQWISEVMATFGLLFVIVGGLRSRPDAVPTLVALYITGAYWFTSSTSFANPAVTIARGFSDTFAGINPSHIAMFVVAQAIGMTVALIVLPKLFEPRSET</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M6M5</accession>
    <name>A0A1M5M6M5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Predicted dithiol-disulfide isomerase, DsbA family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0667</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72944.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899263.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0667"/>
    <dbReference type="EnsemblBacteria" id="SHG72944">
        <property type="protein sequence ID" value="SHG72944"/>
        <property type="gene ID" value="SAMN05444003_0667"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001853">
        <property type="entry name" value="DSBA-like_thioredoxin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01323">
        <property type="entry name" value="DSBA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DSBA" evidence="1">
        <location>
            <begin position="4"/>
            <end position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG72944.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="214" mass="24174" checksum="16D1E4BC658424AD" modified="2017-03-15" version="1">MVKLDIISDPICPWCYIGKSNLDKALAQYLDHPFEIEWHPFQLNPDMPAEGMDRREYLETKFGGKEGVVRSYGPVVTHAENSGVEMHLDKIQITPNTIDAHRLIHWAGLEQRQLLMVDLLFKAYFVDGRDISDHEVLADLADTAEMDASMVTRLLASDSDIEDIRARDVHSRKMGVQSVPTFIVANQHAVPGAQPPEMWAKVIEDIQQQLDAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M757</accession>
    <name>A0A1M5M757_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Las17-binding protein actin regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0672</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73080.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899271.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0672"/>
    <dbReference type="EnsemblBacteria" id="SHG73080">
        <property type="protein sequence ID" value="SHG73080"/>
        <property type="gene ID" value="SAMN05444003_0672"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007461">
        <property type="entry name" value="Ysc84_actin-binding"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04366">
        <property type="entry name" value="Ysc84"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012702856" evidence="1">
        <location>
            <begin position="20"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="domain" description="Ysc84" evidence="2">
        <location>
            <begin position="97"/>
            <end position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04366"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG73080.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="184" mass="19337" checksum="9FB1099EBB672D97" modified="2017-03-15" version="1">MTQLSRRTFALSAAALPLAACGNGIGSTGAAMIDARVDETLNFMYSTYPDTQELANRASGQLVMPLVSEIGLGFGGAYGRGALRVGESTVDYYSATSASAGFQIGAQQYSHVLFFMTPEALQDFRSSDGWTAGADLEYAVSDQGEVLRADTLTSLSPVIAVVFGQAGLRLGATLQGTKYTRIIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M7D0</accession>
    <name>A0A1M5M7D0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Membrane protein YqaA, SNARE-associated domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0678</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73204.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899279.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0678"/>
    <dbReference type="EnsemblBacteria" id="SHG73204">
        <property type="protein sequence ID" value="SHG73204"/>
        <property type="gene ID" value="SAMN05444003_0678"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032816">
        <property type="entry name" value="SNARE_assoc"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09335">
        <property type="entry name" value="SNARE_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="52"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="102"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="132"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="171"/>
            <end position="191"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG73204.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="192" mass="21273" checksum="DCF98A99CBED4ECE" modified="2017-03-15" version="1">MIRRLYDWTMGLAESPYAIWALAIVAFVESSFFPIPPDVLMIPMIIARPNRAFLIAGVATVASVLGGLFGYYIGYSLFELIGQPIFDFYGKADSVAAFSENYNAYGAWAVLIAGVTPFPFKVITIMSGVTQLSLTVFIISAIIARALRFFIVATLLWKFGEPIREFIEKRLGLVFTVFCILLVGGFVALRFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M7M4</accession>
    <name>A0A1M5M7M4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, AsnC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0681</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73266.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899285.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0681"/>
    <dbReference type="EnsemblBacteria" id="SHG73266">
        <property type="protein sequence ID" value="SHG73266"/>
        <property type="gene ID" value="SAMN05444003_0681"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000485">
        <property type="entry name" value="AsnC-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019888">
        <property type="entry name" value="Tscrpt_reg_AsnC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019887">
        <property type="entry name" value="Tscrpt_reg_AsnC/Lrp_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01037">
        <property type="entry name" value="AsnC_trans_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13404">
        <property type="entry name" value="HTH_AsnC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00033">
        <property type="entry name" value="HTHASNC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00344">
        <property type="entry name" value="HTH_ASNC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50956">
        <property type="entry name" value="HTH_ASNC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH asnC-type" evidence="4">
        <location>
            <begin position="1"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG73266.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="139" mass="15418" checksum="3035237E56C9F098" modified="2017-03-15" version="1">MDKMDAQLIRLLRRNARAPLSELAADLGVQRNTVRARLAKLTEAGEIVGFTVQTKADVQEHPVRGFMMLEIAGRQSERAAAALFKRPEVQAVHSTNGKWDYIAEIGAETLEDFDAALTAIRRTDAIGRTETSILLSTRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MDK9</accession>
    <name>A0A1M5MDK9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Maleate isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0759</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74999.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899418.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0759"/>
    <dbReference type="EnsemblBacteria" id="SHG74999">
        <property type="protein sequence ID" value="SHG74999"/>
        <property type="gene ID" value="SAMN05444003_0759"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026286">
        <property type="entry name" value="MaiA/AMDase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40267">
        <property type="entry name" value="PTHR40267"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17645">
        <property type="entry name" value="Amdase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015736">
        <property type="entry name" value="MI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0413">Isomerase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG74999.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="235" mass="25275" checksum="6E3A5346E62AF4B8" modified="2017-03-15" version="1">MIQLPYTLDADDPRVLPIGLIVLQADETLEIEFKTTLSDLENPVYVTRIASAESVSNDTLSAMKGDIASAASLLPNARKYAAIGYGCTSASSIIGSDVVSDLVRSVCDVKHVTDPLRAACENAKFLGVNRFALLSPYVEEVNLPLRSAFTDYGISTDVFGSFSEPSEANVARISTKSIVEAASQLGQDESVDSVFLSCTNLRTLEAISEIQNRIQKPVFSSNFCLAWHLKALSSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5ME81</accession>
    <name>A0A1M5ME81_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">YHS domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0781</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75482.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899450.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG75482">
        <property type="protein sequence ID" value="SHG75482"/>
        <property type="gene ID" value="SAMN05444003_0781"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007029">
        <property type="entry name" value="YHS_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04945">
        <property type="entry name" value="YHS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013359322" evidence="1">
        <location>
            <begin position="21"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="domain" description="YHS" evidence="2">
        <location>
            <begin position="57"/>
            <end position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04945"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG75482.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="171" mass="17964" checksum="BA117BBBADD2B621" modified="2017-03-15" version="1">MKLIASSIAALVASASFAFAGDQYIDETGFAASGYDVVAYFGLDQSAVGTAQPEGVPGNANITAEYNGATWAFSSEANRDTFLANPAQYAPQFDGHCAYGVSRGGKVPANPNLWRIVDGKLYLNITENVVGFWEEDIPGNITLADGNWTGIEPQAASTRTIPSFSSSAPVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MG15</accession>
    <name>A0A1M5MG15_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0818</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76354.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899501.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG76354">
        <property type="protein sequence ID" value="SHG76354"/>
        <property type="gene ID" value="SAMN05444003_0818"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="27"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="74"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="106"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="221"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="261"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG76354.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="388" mass="42430" checksum="0683998CB5F5E253" modified="2017-03-15" version="1">MEELETSLSDAEKAEIARIHAAQRGEYILVASGIFTNVILMMIWIYQVRIVRRHWQNLFPVGHRLSRIRYPLNISIQLSILTFAVFMIGFHRILDLPSILELPHEAYGLVIFSLTAAQITALTFVTSFGVAAYRHNYPDAAEIALHVKTLKENLSEHFDLKGLIDIALFGLGDDPNPPKIVVSNQAQTTATWPAKVPVPPYLDNGLTAATSTQLVALLSRVLGIGYILFIIYVGLVVSSLSADLNATDDLRTALADLSEGWLIAIGTGFTLVLMLVYTVPTSGLAPFVSSPKPSPKLQIKGNKDGFVLLDPPAAPKKKTEKQKHIDQLWHLREGEMGANQEKFSAIINAAHRGGGFHELLDDSLLKHAKTFLGLISPAIAAGALSFLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MKW4</accession>
    <name>A0A1M5MKW4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Purine nucleosidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0882</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77875.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899592.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0882"/>
    <dbReference type="EnsemblBacteria" id="SHG77875">
        <property type="protein sequence ID" value="SHG77875"/>
        <property type="gene ID" value="SAMN05444003_0882"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045437">
        <property type="term" value="F:uridine nucleosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006139">
        <property type="term" value="P:nucleobase-containing compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901564">
        <property type="term" value="P:organonitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.245.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015910">
        <property type="entry name" value="I/U_nuclsd_hydro_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001910">
        <property type="entry name" value="Inosine/uridine_hydrolase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023186">
        <property type="entry name" value="IUNH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036452">
        <property type="entry name" value="Ribo_hydro-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12304">
        <property type="entry name" value="PTHR12304"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01156">
        <property type="entry name" value="IU_nuc_hydro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53590">
        <property type="entry name" value="SSF53590"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01247">
        <property type="entry name" value="IUNH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="IU_nuc_hydro" evidence="3">
        <location>
            <begin position="6"/>
            <end position="303"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG77875.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="313" mass="34141" checksum="D8FD9B542A73F556" modified="2017-03-15" version="1">MSPRKIIIDTDPGQDDAVAILLALASPEDVDVLGVVAVAGNVPLPLTEKNARIVCELAGKPETKVFAGEAEPIKRKLVTAEHVHGKTGLDGPKMDDPTMPLQDQGGVDFIIETLRAEPFGTVTLCPLGPLTNIATAFERAPDIVDRVQEIVLMGGAYFQVGNITPAAEFNIYVDPEAAKIVFGSGVKLTVMPLDVTHKALTTRPRVEAFRSIGNRAGRMVAEWTDFFERFDKEKYGSEGAPLHDPCVIAYLIKPDLFTGRFVNVEIETESELTLGMTVADWWRVSGREPNAMFMGDLDSDGFFSLLTERLARL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MLZ0</accession>
    <name>A0A1M5MLZ0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Septum formation initiator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0890</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78062.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0890"/>
    <dbReference type="EnsemblBacteria" id="SHG78062">
        <property type="protein sequence ID" value="SHG78062"/>
        <property type="gene ID" value="SAMN05444003_0890"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007060">
        <property type="entry name" value="FtsL/DivIC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04977">
        <property type="entry name" value="DivIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="39"/>
            <end position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG78062.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="99" mass="11146" checksum="DCDBFC0C90183A72" modified="2017-03-15" version="1">MIRRSRPAMGSLMYFLGTLMLGLYFTFAAVQGDYGVFKRAEVNAEGRALSAELALLETEVARMENLTRRLSDTYLDLDLLDEQARDVLGLIRADEIVIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MM23</accession>
    <name>A0A1M5MM23_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">Malonyl CoA-acyl carrier protein transacylase</fullName>
            <ecNumber evidence="2 5">2.3.1.39</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_0903</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>holo-[ACP] + malonyl-CoA = CoA + malonyl-[ACP]</text>
            <dbReference type="Rhea" id="RHEA:41792"/>
            <dbReference type="Rhea" id="RHEA-COMP:9623"/>
            <dbReference type="Rhea" id="RHEA-COMP:9685"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57384"/>
            <dbReference type="ChEBI" id="CHEBI:64479"/>
            <dbReference type="ChEBI" id="CHEBI:78449"/>
            <dbReference type="EC" id="2.3.1.39"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the fabD family.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.39" evidence="2 5"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78358.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899617.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0903"/>
    <dbReference type="EnsemblBacteria" id="SHG78358">
        <property type="protein sequence ID" value="SHG78358"/>
        <property type="gene ID" value="SAMN05444003_0903"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004314">
        <property type="term" value="F:[acyl-carrier-protein] S-malonyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.366.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001227">
        <property type="entry name" value="Ac_transferase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014043">
        <property type="entry name" value="Acyl_transferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016035">
        <property type="entry name" value="Acyl_Trfase/lysoPLipase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024925">
        <property type="entry name" value="Malonyl_CoA-ACP_transAc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004410">
        <property type="entry name" value="Malonyl_CoA-ACP_transAc_FabD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016036">
        <property type="entry name" value="Malonyl_transacylase_ACP-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00698">
        <property type="entry name" value="Acyl_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000446">
        <property type="entry name" value="Mct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00827">
        <property type="entry name" value="PKS_AT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52151">
        <property type="entry name" value="SSF52151"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55048">
        <property type="entry name" value="SSF55048"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00128">
        <property type="entry name" value="fabD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PKS_AT" evidence="7">
        <location>
            <begin position="5"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="92"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="201"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013258"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00018953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR000446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000446-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG78358.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="312" mass="32276" checksum="C9DA823FAD98303E" modified="2017-03-15" version="1">MRAFVFPGQGAQTIGMGKALADAYPASKAVFDEVDEALGEKLSDLIWEGDIETLTLTANAQPALMATSMAAMRALEAEGVTMDHVDYVAGHSLGEYSALAAAGAFQVGDAARLLRTRGEAMQSAVPVGVGAMAVLLGLNFDAAQAVASEAAQCEVCQAANDNDPSQVVVSGDKAAVERAVEIAKEQGARRAMLLPVSAPFHCSLMAPAAEVMAQALAEVDIERPAVPVVANVLAKSVSDPATIRSLLVEQVTGSVRWRESVSWMAENGVTSTVEVGAGKALTGMIRRIHKEMATANVGTPEDVSAVAAEIKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MN95</accession>
    <name>A0A1M5MN95_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">TRAP-type C4-dicarboxylate transport system, small permease component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_0919</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78706.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899642.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0919"/>
    <dbReference type="EnsemblBacteria" id="SHG78706">
        <property type="protein sequence ID" value="SHG78706"/>
        <property type="gene ID" value="SAMN05444003_0919"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007387">
        <property type="entry name" value="TRAP_DctQ"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35011">
        <property type="entry name" value="PTHR35011"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04290">
        <property type="entry name" value="DctQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="31"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="68"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="98"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="123"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="155"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="193"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="235"/>
            <end position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG78706.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="281" mass="31949" checksum="DA14CC134BCCD0F6" modified="2017-03-15" version="1">MSIWSDAATIVNATLSGDINFKVVQAYRSNGAWLVFAPLTLIGAVILYYRERLAERLEERRGKPTTSFTHPIIALFLTIALVAAFWDPFGSWLETITGGYQRVILIGVPVILVLFERTPERTIVVYSYIVMAAIIFIGVIQRFGFNAQVPWSTTIPPLLFMIMAWYGAVLNVRLRTHLSFSEFRTKMKPKGQMFWLTFDNVLWLIFCIIVVTTTARATVNTYDNFAIVLGTDDIMRWWFMFTMPLCFILLATRAIENMIEDLGKYRSGAPMIEQAVIGGDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MPY3</accession>
    <name>A0A1M5MPY3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Serine--tRNA ligase</fullName>
            <ecNumber evidence="8">6.1.1.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Seryl-tRNA synthetase</fullName>
            <shortName evidence="8">SerRS</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Seryl-tRNA(Ser/Sec) synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">serS</name>
        <name evidence="11" type="ORF">SAMN05444003_0950</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>ATP + L-serine + tRNA(Sec) = AMP + diphosphate + H(+) + L-seryl-tRNA(Sec)</text>
            <dbReference type="Rhea" id="RHEA:42580"/>
            <dbReference type="Rhea" id="RHEA-COMP:9742"/>
            <dbReference type="Rhea" id="RHEA-COMP:10128"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78533"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.11"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>ATP + L-serine + tRNA(Ser) = AMP + diphosphate + H(+) + L-seryl-tRNA(Ser)</text>
            <dbReference type="Rhea" id="RHEA:12292"/>
            <dbReference type="Rhea" id="RHEA-COMP:9669"/>
            <dbReference type="Rhea" id="RHEA-COMP:9703"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78533"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.11"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="8">Aminoacyl-tRNA biosynthesis; selenocysteinyl-tRNA(Sec) biosynthesis; L-seryl-tRNA(Sec) from L-serine and tRNA(Sec): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer. The tRNA molecule binds across the dimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="8">Consists of two distinct domains, a catalytic core and a N-terminal extension that is involved in tRNA binding.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the class-II aminoacyl-tRNA synthetase family. Type-1 seryl-tRNA synthetase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.11" evidence="8"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79351.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899697.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0950"/>
    <dbReference type="EnsemblBacteria" id="SHG79351">
        <property type="protein sequence ID" value="SHG79351"/>
        <property type="gene ID" value="SAMN05444003_0950"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00906">
        <property type="reaction ID" value="UER00895"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004828">
        <property type="term" value="F:serine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016260">
        <property type="term" value="P:selenocysteine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097056">
        <property type="term" value="P:selenocysteinyl-tRNA(Sec) biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006434">
        <property type="term" value="P:seryl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00770">
        <property type="entry name" value="SerRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00176">
        <property type="entry name" value="Ser_tRNA_synth_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002314">
        <property type="entry name" value="aa-tRNA-synt_IIb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002317">
        <property type="entry name" value="Ser-tRNA-ligase_type_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015866">
        <property type="entry name" value="Ser-tRNA-synth_1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042103">
        <property type="entry name" value="SerRS_1_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033729">
        <property type="entry name" value="SerRS_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010978">
        <property type="entry name" value="tRNA-bd_arm"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43697">
        <property type="entry name" value="PTHR43697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02403">
        <property type="entry name" value="Seryl_tRNA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00587">
        <property type="entry name" value="tRNA-synt_2b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001529">
        <property type="entry name" value="Ser-tRNA-synth_IIa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00981">
        <property type="entry name" value="TRNASYNTHSER"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46589">
        <property type="entry name" value="SSF46589"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00414">
        <property type="entry name" value="serS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8 11" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="5 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2 8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 8" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 8" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AA_TRNA_LIGASE_II" evidence="10">
        <location>
            <begin position="173"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="region of interest" description="Serine binding" evidence="8">
        <location>
            <begin position="231"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="9">
        <location>
            <begin position="37"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="262"/>
            <end position="264"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="285"/>
        </location>
        <ligand>
            <name>L-serine</name>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="349"/>
            <end position="352"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="385"/>
        </location>
        <ligand>
            <name>L-serine</name>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG79351.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="430" mass="47165" checksum="618A117CD59492F1" modified="2017-03-15" version="1">MHDIRAIRDNPAAFDAALSRRGVAASSSDILAIDGERRAAIQAAEAAQAEANKAAKEVGAAKGRGDEAEFERLRALVGAKKSEIAELNDKAKELDVQLNDLLMGIPNLPYDDVPNGEDEDDNVEIRRHGNPRNFDFDPVEHYEIAGVQDGMDFETAAKLSGSRFVLLSGAVARLHRALAQFMLDTHVEENGLSETITPVLVREDMMYGTGQLPKFGEDSYQTTNGWWLIPTAEVTLTNIVNGSTVEESYLPRRYVAHTQCFRSEAGSAGRDTSGMLRQHQFEKVEMVTVCHPEQSEAEHERMTKCAEGILEKLELPYRTVVLCTGDMGAGARRTHDIEVWLPGQNTYREISSVSTCGDYQARRMNARFKPSEGGKPEFLHTLNGSGLAVGRALISVLENGQQADGSVDLPSALYPYLRGKTRITAEGALE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MS34</accession>
    <name>A0A1M5MS34_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">4-carboxymuconolactone decarboxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0995</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80250.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899738.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0995"/>
    <dbReference type="EnsemblBacteria" id="SHG80250">
        <property type="protein sequence ID" value="SHG80250"/>
        <property type="gene ID" value="SAMN05444003_0995"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051920">
        <property type="term" value="F:peroxiredoxin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029032">
        <property type="entry name" value="AhpD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003779">
        <property type="entry name" value="CMD-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02627">
        <property type="entry name" value="CMD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69118">
        <property type="entry name" value="SSF69118"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CMD" evidence="1">
        <location>
            <begin position="43"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02627"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG80250.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="131" mass="14441" checksum="C6FCB8876A86EEAC" modified="2017-03-15" version="1">MTDNPFEAMMKLSQDWAKQMAPAMETFTPKGFEEMFPTMSKDMMEQFMGKGISPEGLDAKTRLLLTLQGLTIHGAQAEAQIRLTVRHLIEAEATEQEIAETIGLAAMFGGVPAMTKAMEIANDVLNKDKTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MV54</accession>
    <name>A0A1M5MV54_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1033</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81012.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899773.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1033"/>
    <dbReference type="EnsemblBacteria" id="SHG81012">
        <property type="protein sequence ID" value="SHG81012"/>
        <property type="gene ID" value="SAMN05444003_1033"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012725554" evidence="2">
        <location>
            <begin position="17"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="23"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="30"/>
            <end position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG81012.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="155" mass="16485" checksum="923C3D1E6EB2D359" modified="2017-03-15" version="1">MRHFLLGAFLFLSACAEPLFQTPTGPAVTTPPETLDPTPPPPPPPTARTVEQFDTTSQEDRIEAITVVQRTGERSLGVTNVSLGSATDPGIWIKTAQVTELQMGRAVYLVTGKSINIELRPSGGEAGSASQLSLAAMRLLEIPLTDLADVEVFAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MVJ0</accession>
    <name>A0A1M5MVJ0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Peptide/nickel transport system substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1042</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial solute-binding protein 5 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81207.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899781.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1042"/>
    <dbReference type="EnsemblBacteria" id="SHG81207">
        <property type="protein sequence ID" value="SHG81207"/>
        <property type="gene ID" value="SAMN05444003_1042"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030288">
        <property type="term" value="C:outer membrane-bounded periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030678">
        <property type="entry name" value="Peptide/Ni-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039424">
        <property type="entry name" value="SBP_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000914">
        <property type="entry name" value="SBP_5_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30290">
        <property type="entry name" value="PTHR30290"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00496">
        <property type="entry name" value="SBP_bac_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002741">
        <property type="entry name" value="MppA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012590055" evidence="2">
        <location>
            <begin position="23"/>
            <end position="573"/>
        </location>
    </feature>
    <feature type="domain" description="SBP_bac_5" evidence="3">
        <location>
            <begin position="76"/>
            <end position="474"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG81207.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="573" mass="61615" checksum="599CF6124EA4F40D" modified="2017-03-15" version="1">MKVKTALLGAIASTALAPMVLADAHEGERGRDGEVKIIYWQAPSILNPFLSGGTKDVESASMIIEPLARYNSSGELTPWLVDEVPTVANGGVSEDLMSITWKITPGILWSDGTPFTSADVKFTADYCMNPDMGCAQLTKFEGVSSVEALDDLTVKVTFDKPTPFPYGPFVGGESPIIQAAQFADCTGAKAPECTDQNFGPIGTGPFVVTEFRTNDVIQMVANENYRDPNKPAFASVTFKGGGDATAAGRAVMETGEFDYAWNLQLAPDVIAQMQEGGLGTPIAGFGPLVERIMLNQTNPDPSLSADDRSVVGPHPFLGEEAVYKAMSMAIDRPLLVEVGYGQAGKVTCNWIPAPAAVNSDTFTCDVQDIAGANAMLDAAGFVDTNGDGVREANGVEMKMLYQTSTNAVRQDFQALIKQWMSEIGIEVELRNIDASVFFGGDPGSPDTFQKFYADMEMYANTFNGTDPQAYLANGLCDKAPSPATQWQGENISRFCSEEYDALHAQLTGTANADERASLARQMNDIMVSEGGMIPLVHRGRLSAHANSLGGIELNVWDSELWNVADWYRTGDNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MYZ5</accession>
    <name>A0A1M5MYZ5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">EamA-like transporter family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1087</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82149.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899819.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1087"/>
    <dbReference type="EnsemblBacteria" id="SHG82149">
        <property type="protein sequence ID" value="SHG82149"/>
        <property type="gene ID" value="SAMN05444003_1087"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="37"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="69"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="94"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="129"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="156"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="186"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="216"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="245"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="272"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="10"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="156"/>
            <end position="287"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG82149.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="299" mass="31353" checksum="D05262374B1170DB" modified="2017-03-15" version="1">MTTQPTLSNWLSILALGVIWGGTFMVVTIALRGYGPFTVAGARTTLGAVSLLILLKATGHKLPMLHGRALGLMVAIGILNTALPFSLLSWGQQYVPSAFAGISMAALPLFVLPLAHVFSDEPLSSRKAVGVLLGFAGATVLIGPGVLRIGSGLEPLGQIACLLAAFSYAVSSILTRNFPPMDPLALATWTLIIGSICLVPITLATEGIPTWAGAEAGLAILFLGLFPTALAALLRVMVIRSAGSVFMTLVNYQVPLWSMVFGAFVLGEMLPLRFFAALTLILLGLAISQWASLQRLARG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N0D9</accession>
    <name>A0A1M5N0D9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative mRNA 3-end processing factor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1120</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82957.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899846.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1120"/>
    <dbReference type="EnsemblBacteria" id="SHG82957">
        <property type="protein sequence ID" value="SHG82957"/>
        <property type="gene ID" value="SAMN05444003_1120"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026360">
        <property type="entry name" value="Xnuc_lig_assoc"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04122">
        <property type="entry name" value="Xnuc_lig_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG82957.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="333" mass="36484" checksum="C6C9FE7C429B313A" modified="2017-03-15" version="1">MSDVLTFTDRGIYCAAGDFYIDPWKSVDRALITHGHADHARPGMKAYLATPTAKPVMQYRLGSDARIETQLYGIEQKIGSASVSFHPAGHVPGSAQIKVVVDGEAWVVSGDYKTVDDGLSEPFEPVKCHAFISECTFGLPVFNWTPQDVLADQINTWWQANHSEGRFSLLGAYALGKAQRLLSTVDASIGPILTHGAIENTNEVLRAQGIALPDTIRVTPELNIKDYPRALVLATPGALAQSWAQKFNPSSSAFASGWMALRGVRRRRSADQGFIVSDHADWRGLNEAIAATEAEKIFVTHGYTSQFRRWLEDQGYDAHIVATDYTGDEDSGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N2S9</accession>
    <name>A0A1M5N2S9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1133</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83303.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899858.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG83303">
        <property type="protein sequence ID" value="SHG83303"/>
        <property type="gene ID" value="SAMN05444003_1133"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG83303.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="59" mass="6743" checksum="DDB314CB3FCA3702" modified="2017-03-15" version="1">MIKYFYPDGSHCYRALHTTHAVFRDDAGKLIARAQKASGELYEFEIVGFELLEAGVRYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N4H3</accession>
    <name>A0A1M5N4H3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Probable multidrug resistance protein NorM</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1184</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Multidrug efflux pump.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84448.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899902.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1184"/>
    <dbReference type="EnsemblBacteria" id="SHG84448">
        <property type="protein sequence ID" value="SHG84448"/>
        <property type="gene ID" value="SAMN05444003_1184"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042910">
        <property type="term" value="F:xenobiotic transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002528">
        <property type="entry name" value="MATE_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01554">
        <property type="entry name" value="MatE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006603">
        <property type="entry name" value="DinF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00797">
        <property type="entry name" value="matE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="47"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="94"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="133"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="162"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="193"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="246"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="273"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="317"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="357"/>
            <end position="384"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="396"/>
            <end position="417"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="423"/>
            <end position="443"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00020268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG84448.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="450" mass="48261" checksum="EA1537D77BCAEAF8" modified="2017-03-15" version="1">MEQVAQTYQEHGRAALKLGLPLIASNLAQFAIHITDTIMLGWYDVTALAAVTIAGTAFFVTFIVGAGFAMAVTPLVAAAEEEGNDTQVRRITRMGLWLSVMYGAVFTIPFFWAEPILLAAGQTEAVASLAHEYLVIACLGMVPALLVMTLKSYLAALEHTAIILWATVAAAVLNAFVNYALIFGNWGAPELGIQGAAIASVLLQVVTVVILLVYALRKLPQHQLTRNVLKSDWEIFGKVFRLGWPIGLTSLAEGGLFSVSAFLMGWIGELELAAHGIAIQLASLTFMVHIGLSQAATVRAGRAVGRHDEGQLRRGGIAIIALSGMFALFTVALFLLIPEALISFFIDPDEPLKDELIQIGVVLLALAALFQVVDAAQVMALGLLRGVQDATVPMAMAVVSYWVIGVPVSYYLAFVAGYDEVGLWLGLVVGLAVAAVLLMWRFWTKSVHIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N4N0</accession>
    <name>A0A1M5N4N0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1182</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84407.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1182"/>
    <dbReference type="EnsemblBacteria" id="SHG84407">
        <property type="protein sequence ID" value="SHG84407"/>
        <property type="gene ID" value="SAMN05444003_1182"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="26"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="64"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="94"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="196"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="236"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="274"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="314"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="347"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="382"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="408"/>
            <end position="427"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG84407.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="432" mass="45789" checksum="8FFACE8684C9F2CF" modified="2017-03-15" version="1">MGLCAPFDRRGADGGRRSVSQRPDGFAAYVAVTAAYWAFMLTDGALRMLVLLHFNTLGFSPVQLAYLFVLYEIAGVVTNLSAGWIAARFGLTSTLYAGLAIQIAALVALAQLDPSWSVTASVVFVMAVQGASGVAKDLAKMSSKSAVKVLAPEEGGSLFRWVAVLTGSKNAVKGFGFLVGAGSLALFGFVPSVLGMAAMLAVILVAILWKMPAGLPQGRKDAKFKEVFSKNRNINWLSAARLFLFGARDVWFVVGIPIYFYSVLSDGTPEGQRAAFFMIGIFMAIWVILYGAVQASAPKVLRADKRSRGDLVSASSFWVGILIIAPLVLTAAVLLTDGPSTGLTTLIVFGLLVFGAIFAVNSALHSYLILAFTDKERVTMDVGFYYMANAAGRLVGTVASGLSYQIGGLALCLATAAAMIAASWLCIRRLEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N6X0</accession>
    <name>A0A1M5N6X0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Propionyl-CoA carboxylase carboxyltransferase subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1221</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85288.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899932.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1221"/>
    <dbReference type="EnsemblBacteria" id="SHG85288">
        <property type="protein sequence ID" value="SHG85288"/>
        <property type="gene ID" value="SAMN05444003_1221"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009317">
        <property type="term" value="C:acetyl-CoA carboxylase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003989">
        <property type="term" value="F:acetyl-CoA carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034733">
        <property type="entry name" value="AcCoA_carboxyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000438">
        <property type="entry name" value="Acetyl_CoA_COase_Trfase_b_su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011763">
        <property type="entry name" value="COA_CT_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011762">
        <property type="entry name" value="COA_CT_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01039">
        <property type="entry name" value="Carboxyl_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01070">
        <property type="entry name" value="ACCCTRFRASEB"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50989">
        <property type="entry name" value="COA_CT_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50980">
        <property type="entry name" value="COA_CT_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="CoA carboxyltransferase N-terminal" evidence="1">
        <location>
            <begin position="1"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="domain" description="CoA carboxyltransferase C-terminal" evidence="2">
        <location>
            <begin position="264"/>
            <end position="504"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG85288.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="510" mass="55947" checksum="F25E670DD8E470CD" modified="2017-03-15" version="1">MKDILQELEDRRAVARMGGGAKRIESQHAKGKLTARERIELLLDADSFEEFDMFVAHRCTDFGMEQQRPPGDGVVTGWGTINGRMVYMFSQDFTVFGGSLSETHAQKICKIMDMAMQNGAPVIGINDSGGARIQEGVASLAGYAEVFQRNIMASGVVPQISVIMGPCAGGAVYSPAMTDFIFMVKDSSYMFVTGPDVVKTVTNEVVTAEELGGASTHTKKSSVADGAFENDVEALAEVRRLVDFLPLNNRAKPPTRPFFDDVNRIEDSLDTLIPDNPNTPYDMKELILKLGDEGDFYEIQEDFAKNIITGFVRLEGSTVGVVANQPMVLAGCLDIDSSRKAARFVRFCDAFEIPILTLVDVPGFLPGTSQEYGGVIKHGAKLLFAYGEATVPKVTVITRKAYGGAYDVMASKHLRGDFNYAWPTAEIAVMGAKGATEIIHRADLGDEEKIAQHTQDYEDRFANPFVAAEKGFIDEVIMPHSTRRRVCRAFASLRGKSLQNPWKKHDNIPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N9V9</accession>
    <name>A0A1M5N9V9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1241</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85793.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1241"/>
    <dbReference type="EnsemblBacteria" id="SHG85793">
        <property type="protein sequence ID" value="SHG85793"/>
        <property type="gene ID" value="SAMN05444003_1241"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="4"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG85793.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="293" mass="32088" checksum="E43B14F79A00859D" modified="2017-03-15" version="1">MRNLDMTALRSFVVVADTGGVTKAAGFLNLTQSAVSMQLKRLEESLNVALLDRSSRAIAVTPAGEQLLSYARRILDLNDEVYGRLTSVEFEGEVTLGVPHDIVYPAVPQVLQKFATAYPRVRVQLLSSFTRGLKAQFARGEVDVILTTESGLEPGGETLVSAPLVWVGAPGGSAWKNRPLRLAYENNCFFRAGVQRRLDEAGIPWDMAVESNNTRTIEATVSADLAVHTMLEGTEPRYFERIHHGGALPELGGMNINMYCREHGNNQVLEDLCAFITNAFRRAPVDLPEAVTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NBL9</accession>
    <name>A0A1M5NBL9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Threonine synthase</fullName>
            <ecNumber evidence="5">4.2.3.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">SAMN05444003_1304</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H2O + O-phospho-L-homoserine = L-threonine + phosphate</text>
            <dbReference type="Rhea" id="RHEA:10840"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57590"/>
            <dbReference type="ChEBI" id="CHEBI:57926"/>
            <dbReference type="EC" id="4.2.3.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 9">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Amino-acid biosynthesis; L-threonine biosynthesis; L-threonine from L-aspartate: step 5/5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the threonine synthase family.</text>
    </comment>
    <dbReference type="EC" id="4.2.3.1" evidence="5"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86888.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900007.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1304"/>
    <dbReference type="EnsemblBacteria" id="SHG86888">
        <property type="protein sequence ID" value="SHG86888"/>
        <property type="gene ID" value="SAMN05444003_1304"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00050">
        <property type="reaction ID" value="UER00065"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004795">
        <property type="term" value="F:threonine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009088">
        <property type="term" value="P:threonine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1380.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="PLP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000634">
        <property type="entry name" value="Ser/Thr_deHydtase_PyrdxlP-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029144">
        <property type="entry name" value="Thr_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037158">
        <property type="entry name" value="Thr_synth_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004450">
        <property type="entry name" value="Thr_synthase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="Trypto_synt_PLP_dependent"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14821">
        <property type="entry name" value="Thr_synth_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="SSF53686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00260">
        <property type="entry name" value="thrC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00165">
        <property type="entry name" value="DEHYDRATASE_SER_THR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="8 9" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0791">Threonine biosynthesis</keyword>
    <feature type="domain" description="Thr_synth_N" evidence="11">
        <location>
            <begin position="2"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="domain" description="PALP" evidence="10">
        <location>
            <begin position="99"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="9">
        <location>
            <position position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000051"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00018679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR604450-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF14821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG86888.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="460" mass="49962" checksum="0145CAA3DE88E081" modified="2017-03-15" version="1">MRYISTRGTAPELTFEEAMMTGLARDGGLYVPADVPTLSHDEIAAMAGLRYEDIAFKVMRPFIGETFTDEEFKSLIDAAYKGFGHDARAPLVQLAPNHFLLELFHGPTLAFKDFAMQLIGQMFQAALGRSGKSITIVGATSGDTGSAAIEAFRGLSNVNVFILYPHGRVSEVQRRQMTTPVESNVHALAVDGDFDDCQAMVKDMFNDFDFREEVALAGVNSINWGRVLAQVVYYFSSAVSLGAPHREVSFTVPTGNFGDIFAGYIAKRMGLPIKDLVVATNQNDILHRTLETGAYTKEGVTPSISPSMDIQVSSNFERALFDAYDRDGATVATQMDDLKSGGFAISQGAYQALKETYKSGRASEAETSAAIKSYVADHGELLCPHSAVGVHVAEDYLGTTPMITLATAHPAKFPAAVEEATGIHPPLPSRMSDLFERPERLTRVAHDLTAIQTIIKDRIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NC13</accession>
    <name>A0A1M5NC13_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">3-oxoacid CoA-transferase subunit A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1315</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the 3-oxoacid CoA-transferase subunit A family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87028.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900014.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1315"/>
    <dbReference type="EnsemblBacteria" id="SHG87028">
        <property type="protein sequence ID" value="SHG87028"/>
        <property type="gene ID" value="SAMN05444003_1315"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008410">
        <property type="term" value="F:CoA-transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012792">
        <property type="entry name" value="3-oxoacid_CoA-transf_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004165">
        <property type="entry name" value="CoA_trans_fam_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004163">
        <property type="entry name" value="CoA_transf_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037171">
        <property type="entry name" value="NagB/RpiA_transferase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13707">
        <property type="entry name" value="PTHR13707"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01144">
        <property type="entry name" value="CoA_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00882">
        <property type="entry name" value="CoA_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100950">
        <property type="entry name" value="SSF100950"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02429">
        <property type="entry name" value="pcaI_scoA_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01273">
        <property type="entry name" value="COA_TRANSF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005612"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG87028.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="231" mass="25127" checksum="C360FB16C0501DDF" modified="2017-03-15" version="1">MNKIYPNAAAALDGLLEDGMFIAAGGFGLCGIPELLLDAIKEAGTKDLTFASNNAGVDDFGIGILLQTRQVKKMISSYVGENAEFMRQYLSGELELEFNPQGTLAERMRAGGCGIPGFYTKTGVGTVIAEGKDHKDFNGETYIMEEGIFADLSIVKAWKADETGNAIFRKTARNFNPPAAMCGKTCVLEVEEIVPTGSLDPDHIHLPGIYVHRIIQGEHKKRIEQRTVREG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NFA2</accession>
    <name>A0A1M5NFA2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">8-oxo-dGTP pyrophosphatase MutT, NUDIX family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1382</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88210.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900074.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1382"/>
    <dbReference type="EnsemblBacteria" id="SHG88210">
        <property type="protein sequence ID" value="SHG88210"/>
        <property type="gene ID" value="SAMN05444003_1382"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="1">
        <location>
            <begin position="20"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG88210.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="156" mass="17777" checksum="7D14B4939D6F195C" modified="2017-03-15" version="1">MLHHLQSAWDEVLGPILRRPKHLQIAALCHRGAKDVREYLLITSRDTRRWIIPKGWPIRGLSSKETALREAWEEAGVKDGKASKDPIGTYTYQKRRDNGLSIPVETLVFSVAVTDMSEAYPEADERQQRWVDAETAAELVDETDLKGLILNQKEQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NGF5</accession>
    <name>A0A1M5NGF5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1400</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88537.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900088.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1400"/>
    <dbReference type="EnsemblBacteria" id="SHG88537">
        <property type="protein sequence ID" value="SHG88537"/>
        <property type="gene ID" value="SAMN05444003_1400"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008320">
        <property type="entry name" value="UCP032025"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07370">
        <property type="entry name" value="DUF1489"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF032025">
        <property type="entry name" value="UCP032025"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG88537.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="143" mass="16186" checksum="9B7ADC8BE33225DA" modified="2017-03-15" version="1">MSKTVHLIKLSVGTEDVAGLEAWQSQKRAQTEDGLPRHITRMWPKREDEILNGGSIFWVIKGVVLCRQPVLRLDEYDSADGIRRCAIVCEPGLIRVEATPRRAFQGWRYLPVDDAPCDLSQARQHEDILPIELTQALAEIGVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NH29</accession>
    <name>A0A1M5NH29_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Nucleoside ABC transporter membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1413</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88802.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900099.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1413"/>
    <dbReference type="EnsemblBacteria" id="SHG88802">
        <property type="protein sequence ID" value="SHG88802"/>
        <property type="gene ID" value="SAMN05444003_1413"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="37"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="64"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="96"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="135"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="193"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="220"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="245"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="274"/>
            <end position="294"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG88802.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="304" mass="31617" checksum="842069166422F513" modified="2017-03-15" version="1">MDLSAINPVLLLASLMVAATPILLAAIGELVVERAGVLNLGVEGMMITGAVCGFVVAVNTGSPWLGFLGAAIGGALLSVLFGVLTQYLLSNQVATGLALTLFGLGVSSLIGQGYIGIKGPEFPDWHIPLLGDIPIIGPIVFQHDPMVYVGLLICLGVWAFLKYSRLGLVLRAVGENHDAAHALGYKVIRIRMAAIMFGGACAGLGGAYLSLVRVPQWTEGMTAGAGWIALAIVVFASWRPGRLLLGAYLFGGVTVLQLNLQAAGLAIPVEYLSMSPYLATIVVLVIMSAGRAPGSLGRIFHASR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NMA6</accession>
    <name>A0A1M5NMA6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, HxlR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1496</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900173.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG90638">
        <property type="protein sequence ID" value="SHG90638"/>
        <property type="gene ID" value="SAMN05444003_1496"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002577">
        <property type="entry name" value="HTH_HxlR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01638">
        <property type="entry name" value="HxlR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51118">
        <property type="entry name" value="HTH_HXLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH hxlR-type" evidence="1">
        <location>
            <begin position="23"/>
            <end position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG90638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="123" mass="13980" checksum="51404814F6F55BE1" modified="2017-03-15" version="1">MKARVEADAKGRRHVHDACIEPCAIERGMRVIGGKWTGSVLWHLKDGPVRFNDLARMIGGASKKMITERLRQLEAQDLINRQVMDTAPVSVQYEITEFGRTALGFLEELRKWSESLPEDMVND</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NUG4</accession>
    <name>A0A1M5NUG4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Oligopeptide transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_1602</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93224.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900268.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1602"/>
    <dbReference type="EnsemblBacteria" id="SHG93224">
        <property type="protein sequence ID" value="SHG93224"/>
        <property type="gene ID" value="SAMN05444003_1602"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045621">
        <property type="entry name" value="BPD_transp_1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19300">
        <property type="entry name" value="BPD_transp_1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="9"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="101"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="142"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="174"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="233"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="275"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="7">
        <location>
            <begin position="95"/>
            <end position="298"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG93224.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="307" mass="34042" checksum="5635F08B7E0B4B35" modified="2017-03-15" version="1">MLGYILRRLAIAIPVLLILVVLSFILMYTAPGGPFNSDRPLPPEVMANIEAKYGLDQPFWKQIATYVWNVTTQFDFGPSFQYKNRTVNDIIAQGFPVTLTYGFWSFVIAVTFGISLGVAAAIRQNTWLDYTAVGISIGAQVLPNFVMAPLLIMFFTLYLGWLPGGGWEGGQWNYVILPVTALATSYMASIARITRSSMLEVLNTNFIRTAQAKGLPKQQIIVRHAMKPTLMPVLSYLGPAFVGMITGSVLIDVFFSTGGIGQYFVNSAFNRDYSVIMGITILVGALTIMFNLVVDLLYAWIDPKIRY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NUT8</accession>
    <name>A0A1M5NUT8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">ATP synthase epsilon chain</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">ATP synthase F1 sector epsilon subunit</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">F-ATPase epsilon subunit</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">atpC</name>
        <name evidence="12" type="ORF">SAMN05444003_1582</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 9">Produces ATP from ADP in the presence of a proton gradient across the membrane.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9 10">F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) has three main subunits: a, b and c.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell membrane</location>
            <topology evidence="9">Peripheral membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 9 10">Belongs to the ATPase epsilon chain family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG92723.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900250.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1582"/>
    <dbReference type="EnsemblBacteria" id="SHG92723">
        <property type="protein sequence ID" value="SHG92723"/>
        <property type="gene ID" value="SAMN05444003_1582"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045261">
        <property type="term" value="C:proton-transporting ATP synthase complex, catalytic core F(1)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd12152">
        <property type="entry name" value="F1-ATPase_delta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00530">
        <property type="entry name" value="ATP_synth_epsil_bac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001469">
        <property type="entry name" value="ATP_synth_F1_dsu/esu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020546">
        <property type="entry name" value="ATP_synth_F1_dsu/esu_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036771">
        <property type="entry name" value="ATPsynth_dsu/esu_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13822">
        <property type="entry name" value="PTHR13822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02823">
        <property type="entry name" value="ATP-synt_DE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51344">
        <property type="entry name" value="SSF51344"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01216">
        <property type="entry name" value="ATP_synt_epsi"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9 10" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 9 10" id="KW-0139">CF(1)</keyword>
    <keyword evidence="9" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="5 9 10" id="KW-0406">Ion transport</keyword>
    <keyword evidence="6 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9 10" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ATP-synt_DE_N" evidence="11">
        <location>
            <begin position="4"/>
            <end position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003543"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005712"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00530"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF02823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG92723.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="141" mass="14941" checksum="72945D1E93C96CE8" modified="2017-03-15" version="1">MANLQFDLVSPERRLASVEASEVQIPGADGDMTVMAMHAPTITTLRPGMLRVVSGSGTEEYVVSGGFAEINAESVSVLAESAVPKAEMTQEIFDQMVEDAKRVHAEAQSDFENEPGPVDDAAKLISDMVNMGGEIGLNASK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NXS5</accession>
    <name>A0A1M5NXS5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized conserved protein, DUF849 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1651</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG94287.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1651"/>
    <dbReference type="EnsemblBacteria" id="SHG94287">
        <property type="protein sequence ID" value="SHG94287"/>
        <property type="gene ID" value="SAMN05444003_1651"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019475">
        <property type="term" value="P:L-lysine catabolic process to acetate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008567">
        <property type="entry name" value="KCE_family"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37418">
        <property type="entry name" value="PTHR37418"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05853">
        <property type="entry name" value="BKACE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG94287.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="257" mass="28793" checksum="50BFE31BB1F70DCC" modified="2017-03-15" version="1">MKSLPRIMVAPNGARFNKRDHPALPITIAETVECAIACNAVGADGLHAHIRDEQGNHLLDRYVYAELIRELETMVPEMKVQITTEAVDRYSPDFQMEIALGSGAKMVSVSIRELSTATPEATSEFYLECEAKDIAIQHILYDTNDCALLQQRLPHKLFSSSSLQLLFVLGRYSESKEASPSELKPFLRWLSTAQLSPDWAVCAFGKKETECLMESKRHGGKCRIGFENSFFLRSGEVAEFNAEKVEDFRCAIDEAIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PJG8</accession>
    <name>A0A1M5PJG8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Ribosome-binding ATPase YchF</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">ychF</name>
        <name evidence="6" type="ORF">SAMN05444003_1664</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. YchF/OLA1 subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH01639.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900487.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1664"/>
    <dbReference type="EnsemblBacteria" id="SHH01639">
        <property type="protein sequence ID" value="SHH01639"/>
        <property type="gene ID" value="SAMN05444003_1664"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043023">
        <property type="term" value="F:ribosomal large subunit binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043022">
        <property type="term" value="F:ribosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04867">
        <property type="entry name" value="TGS_YchF_OLA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01900">
        <property type="entry name" value="YchF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00944">
        <property type="entry name" value="YchF_OLA1_ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004396">
        <property type="entry name" value="ATPase_YchF/OLA1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031167">
        <property type="entry name" value="G_OBG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012676">
        <property type="entry name" value="TGS-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023192">
        <property type="entry name" value="TGS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013029">
        <property type="entry name" value="YchF_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041706">
        <property type="entry name" value="YchF_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06071">
        <property type="entry name" value="YchF-GTPase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006641">
        <property type="entry name" value="CHP00092"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00326">
        <property type="entry name" value="GTP1OBG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81271">
        <property type="entry name" value="SSF81271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00092">
        <property type="entry name" value="TIGR00092"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51710">
        <property type="entry name" value="G_OBG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="1 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="OBG-type G" evidence="5">
        <location>
            <begin position="3"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="12"/>
            <end position="17"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00944"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51710"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH01639.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="365" mass="39634" checksum="52316B23020D3952" modified="2017-03-15" version="1">MGFKMGIVGLPNVGKSTLFNALTKTAAAQAANFPFCTIEPNVGEVSVPDARLDKLAEVANSKNKIPARMTFVDIAGLVKGASQGEGLGNQFLANIREVDAIAHVLRCFEDDDITHVEGRVDPVADAQVIETELMLADLESIEKRLQNIVRKVRGGDKEAVLQQKLMERAQEALENGQPARTVEVDAEDQKAWNMLQLLTTKPVLYVCNVEEDSAGTGNSQSARVAEMAAAEGNSHVVISARIEEEISQLEDDEAEMFLGEMGLEEAGLDRLIRAGYDLLNLQTYFTCGPTESRAWTIKEGTFAPQAAGVIHGDFERGFIRAETIAFDDYVACGGEQGAKEAGKMRAEGKAYLVKDGDVMHFLHNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PKJ8</accession>
    <name>A0A1M5PKJ8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Magnesium and cobalt transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1699</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0053 family. Hemolysin C subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02336.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900515.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1699"/>
    <dbReference type="EnsemblBacteria" id="SHH02336">
        <property type="protein sequence ID" value="SHH02336"/>
        <property type="gene ID" value="SAMN05444003_1699"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04590">
        <property type="entry name" value="CBS_pair_CorC_HlyC_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044751">
        <property type="entry name" value="Ion_transp-like_CBS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005170">
        <property type="entry name" value="Transptr-assoc_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03471">
        <property type="entry name" value="CorC_HlyC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM01091">
        <property type="entry name" value="CorC_HlyC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0129">CBS domain</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="CBS" evidence="6">
        <location>
            <begin position="73"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="6">
        <location>
            <begin position="140"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH02336.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="296" mass="32414" checksum="3364891ABD4A766E" modified="2017-03-15" version="1">MGDTTDGSSNAAHRAQDNSSGSKQPGLIARLFGGRANGVEPVSALPTPNPDQKPQPPMLGMLNLRRMSVEEVMVPKADIVAVAVDTPKAELVKVFRESGLTRLPVFDGTLDTPLGFVNLKDFALKHGFNGKTTKIDLKKLVRPLLFVPPSMPLGILLQKMQSDRIHMALVIDEYGGTDGLLTIEDLLEQVVGEIEDEHDIEEAKSWIQEEPGCYLAKAKTSLDEFEVEIGMDLKADAEIDDEDVDTLGGLVFKLLGHVPVRGEMVTHPKGPEFEVLEADPRRIKRLRVRVPALAEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PLL8</accession>
    <name>A0A1M5PLL8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">(S)-2-haloacid dehalogenase</fullName>
            <ecNumber evidence="2">3.8.1.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">2-haloalkanoic acid dehalogenase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="2">Halocarboxylic acid halidohydrolase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="2">L-2-haloacid dehalogenase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1714</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the hydrolytic dehalogenation of small (S)-2-haloalkanoic acids to yield the corresponding (R)-2-hydroxyalkanoic acids.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>an (S)-2-haloacid + H2O = a (2R)-2-hydroxycarboxylate + a halide anion + H(+)</text>
            <dbReference type="Rhea" id="RHEA:11192"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16042"/>
            <dbReference type="ChEBI" id="CHEBI:58314"/>
            <dbReference type="ChEBI" id="CHEBI:137405"/>
            <dbReference type="EC" id="3.8.1.2"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the HAD-like hydrolase superfamily. S-2-haloalkanoic acid dehalogenase family.</text>
    </comment>
    <dbReference type="EC" id="3.8.1.2" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02627.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900865.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1714"/>
    <dbReference type="EnsemblBacteria" id="SHH02627">
        <property type="protein sequence ID" value="SHH02627"/>
        <property type="gene ID" value="SAMN05444003_1714"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018784">
        <property type="term" value="F:(S)-2-haloacid dehalogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02588">
        <property type="entry name" value="HAD_L2-DEX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006328">
        <property type="entry name" value="2-HAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006439">
        <property type="entry name" value="HAD-SF_hydro_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041492">
        <property type="entry name" value="HAD_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023198">
        <property type="entry name" value="PGP-like_dom2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13419">
        <property type="entry name" value="HAD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00413">
        <property type="entry name" value="HADHALOGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01493">
        <property type="entry name" value="HAD-SF-IA-v2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01428">
        <property type="entry name" value="HAD_type_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU368077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH02627.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="225" mass="24461" checksum="CB8410ECBCF23079" modified="2017-03-15" version="1">MPITTYVFDAYGTLFDVNAAARVAAAEPGRDALAEVWPKLASDWRLKQLEYTWLRAVAGHHCDFWQVTQDGLDWAMEACGLVDAELRERLLALYWELDAFEEVPLMLAALKANGAQTAILSNGSPEMLKGAVDSAGLQTLLDAVLSVESVGVFKPHATVYDLVEGHFGCARDEVLFVSSNGWDACSAAAYGFQTAWVNRAGAPMDRLFGTPQHVLPDLTSIPELG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PPM5</accession>
    <name>A0A1M5PPM5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">16S rRNA m(2)G 1207 methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1769</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03722.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900574.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1769"/>
    <dbReference type="EnsemblBacteria" id="SHH03722">
        <property type="protein sequence ID" value="SHH03722"/>
        <property type="gene ID" value="SAMN05444003_1769"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008757">
        <property type="term" value="F:S-adenosylmethionine-dependent methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044260">
        <property type="term" value="P:cellular macromolecule metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043412">
        <property type="term" value="P:macromolecule modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044238">
        <property type="term" value="P:primary metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002052">
        <property type="entry name" value="DNA_methylase_N6_adenine_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007848">
        <property type="entry name" value="Small_mtfrase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05175">
        <property type="entry name" value="MTS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00092">
        <property type="entry name" value="N6_MTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="MTS" evidence="1">
        <location>
            <begin position="155"/>
            <end position="317"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH03722.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="324" mass="34858" checksum="7FD1A391D4934C9D" modified="2017-03-15" version="1">MASTSRLRTALNDGLLVLPEGAGNIVRPKVDFDIGALADHPLTISTTFAPDAELWSGSGYDVAQNLSPASFTVINVPRSKAFAKALVAQAATQSDLIIVDGDKTDGVDSLFKACRKVLGDVPSVTKNHGRMFWFERTDAFRDWMSEGPKVGAHGFFTTAGIFSDGAIDKGSALLLEKLPKDLSAKIADLGAGWGYLSAGILDRTGVESLTLVEAEEMALDCAKLNITDDRASFHWADARTFEPPEKFDAAVMNPPFHTGREGDPSLGQDFIRSAARMLKPNGDLWMVANRHLPYEATINECFQKVAPVEGSAGFKIVKASRPKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PPU7</accession>
    <name>A0A1M5PPU7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Microcin C transport system substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1775</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial solute-binding protein 5 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03837.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1775"/>
    <dbReference type="EnsemblBacteria" id="SHH03837">
        <property type="protein sequence ID" value="SHH03837"/>
        <property type="gene ID" value="SAMN05444003_1775"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030288">
        <property type="term" value="C:outer membrane-bounded periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030678">
        <property type="entry name" value="Peptide/Ni-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039424">
        <property type="entry name" value="SBP_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000914">
        <property type="entry name" value="SBP_5_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30290">
        <property type="entry name" value="PTHR30290"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00496">
        <property type="entry name" value="SBP_bac_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002741">
        <property type="entry name" value="MppA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SBP_bac_5" evidence="2">
        <location>
            <begin position="140"/>
            <end position="543"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH03837.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="639" mass="71955" checksum="0A4D8DABCB023F7A" modified="2017-03-15" version="1">MQDHRPTAKCVAVCKDQSIQIKQWMLGSAIVAAGALCAFDLRAEGHEEITVSHGFTNFGDLKYGPDESLEYVNVDAPKGGEIAVWAQGSFDSFNQYAREGSTASLNQLPYENVLTGTADDPYGSYCYLCETMEYPESLDWVIFNLRDDVTFSDGTPMTAEDLEFTFNLFQEQGIVEYRNVVSQYIADVEVLDTHKIKFSFTEEAPRRDVVGFAGGTPVFSKAWFEETGTRLDESSDMPFLGTGPYLLDNFDINRRIVYKKDPNWWGADRPINQGRNNFDTIRVEYFADGAAAFEGFKSGAYTFRNENSSKQWATGYEFPAQENGWVKVEELPDGSIGTGQGFVFNLDRETWQDPRVREAISLMVNFEWMNESLFYGLYARPESFWDYSDLKAEGPPSEGEIAILQPLVDEGLLDASILTADPVVAPISTSVNRPLDRRNLRAASALLDEAGWVPGENGVRMKDGETLEAVFLQFSPQFDRIVNPIVENLIALGVDAKLDRVDTSQYIERRRSGDFDLVNHSLGQGYEPGSGLRQWFGSETADNSSRNLMRLRSEAVDRLLPVVIESETLEELNTSTRALDRVLRAEGFWIPQWQKNVHTIAYYDMFRYPDELPPLALGELDFWWYDAEAAEALDAAGAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PQQ2</accession>
    <name>A0A1M5PQQ2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Pantothenate synthetase</fullName>
            <shortName evidence="5">PS</shortName>
            <ecNumber evidence="5">6.3.2.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Pantoate--beta-alanine ligase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">Pantoate-activating enzyme</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">panC</name>
        <name evidence="6" type="ORF">SAMN05444003_1792</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>(R)-pantoate + ATP + beta-alanine = (R)-pantothenate + AMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:10912"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15980"/>
            <dbReference type="ChEBI" id="CHEBI:29032"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57966"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.3.2.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 5">Cofactor biosynthesis; (R)-pantothenate biosynthesis; (R)-pantothenate from (R)-pantoate and beta-alanine: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="5">The reaction proceeds by a bi uni uni bi ping pong mechanism.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 5">Belongs to the pantothenate synthetase family.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.1" evidence="5"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04165.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900592.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1792"/>
    <dbReference type="EnsemblBacteria" id="SHH04165">
        <property type="protein sequence ID" value="SHH04165"/>
        <property type="gene ID" value="SAMN05444003_1792"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00028">
        <property type="reaction ID" value="UER00005"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004592">
        <property type="term" value="F:pantoate-beta-alanine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015940">
        <property type="term" value="P:pantothenate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1300.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00158">
        <property type="entry name" value="PanC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003721">
        <property type="entry name" value="Pantoate_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042176">
        <property type="entry name" value="Pantoate_ligase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21299:SF1">
        <property type="entry name" value="PTHR21299:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02569">
        <property type="entry name" value="Pantoate_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00018">
        <property type="entry name" value="panC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-0436">Ligase</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 5" id="KW-0566">Pantothenate biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton donor" evidence="5">
        <location>
            <position position="36"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="29"/>
            <end position="36"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="146"/>
            <end position="149"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="152"/>
        </location>
        <ligand>
            <name>(R)-pantoate</name>
            <dbReference type="ChEBI" id="CHEBI:15980"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="175"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="183"/>
            <end position="186"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004990"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009256"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022655"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH04165.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="280" mass="30167" checksum="28066E08F52AD6FC" modified="2017-03-15" version="1">MEICRTVEATRSTVAQLRERGDVGLVPTMGALHAGHMNLVAQAMAENASVVTSIFVNPTQFGDPKDLETYPRDDEADLAALRAAGVAAVFMPDVAEMYPEGDETIVETTQLANVFHGLVRPGHFRGVATVVSKLLNIVQPDRVYFGQKDYQQLAVIRRMVRDLRMAVDVRDVATARDADGVALSSRNKRLTSEHRAAAPVLNQALVEAEAALLDGAAVEAIVSMIKARVAGEPLAVLKAIDIVDAATFEPATGDFRGTLGMMISAQFGDVLLIDQREVTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PRC6</accession>
    <name>A0A1M5PRC6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">3-methyl-2-oxobutanoate hydroxymethyltransferase</fullName>
            <ecNumber evidence="5">2.1.2.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Ketopantoate hydroxymethyltransferase</fullName>
            <shortName evidence="5">KPHMT</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">panB</name>
        <name evidence="9" type="ORF">SAMN05444003_1791</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>(6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + 3-methyl-2-oxobutanoate + H2O = (6S)-5,6,7,8-tetrahydrofolate + 2-dehydropantoate</text>
            <dbReference type="Rhea" id="RHEA:11824"/>
            <dbReference type="ChEBI" id="CHEBI:11561"/>
            <dbReference type="ChEBI" id="CHEBI:11851"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="EC" id="2.1.2.11"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5 8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="5 8">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="5">Cofactor biosynthesis; (R)-pantothenate biosynthesis; (R)-pantoate from 3-methyl-2-oxobutanoate: step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2 5">Homodecamer; pentamer of dimers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the PanB family.</text>
    </comment>
    <dbReference type="EC" id="2.1.2.11" evidence="5"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04146.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900591.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1791"/>
    <dbReference type="EnsemblBacteria" id="SHH04146">
        <property type="protein sequence ID" value="SHH04146"/>
        <property type="gene ID" value="SAMN05444003_1791"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00028">
        <property type="reaction ID" value="UER00003"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003864">
        <property type="term" value="F:3-methyl-2-oxobutanoate hydroxymethyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015940">
        <property type="term" value="P:pantothenate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06557">
        <property type="entry name" value="KPHMT-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00156">
        <property type="entry name" value="PanB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003700">
        <property type="entry name" value="Pantoate_hydroxy_MeTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_Kinase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040442">
        <property type="entry name" value="Pyrv_Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20881">
        <property type="entry name" value="PTHR20881"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02548">
        <property type="entry name" value="Pantoate_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000388">
        <property type="entry name" value="Pantoate_hydroxy_MeTrfase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="SSF51621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00222">
        <property type="entry name" value="panB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3 5" id="KW-0566">Pantothenate biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 9" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Alpha-ketoisovalerate binding" evidence="5 7">
        <location>
            <begin position="50"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="5 6">
        <location>
            <position position="188"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5 8">
        <location>
            <position position="50"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 7 8">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5 7">
        <location>
            <position position="119"/>
        </location>
        <ligand>
            <name>3-methyl-2-oxobutanoate</name>
            <dbReference type="ChEBI" id="CHEBI:11851"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 8">
        <location>
            <position position="121"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011424"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022655"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000388-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000388-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000388-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH04146.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="270" mass="29230" checksum="1C049BD05AAC9996" modified="2017-03-15" version="1">MSKQVEVVRRTTVPQIRARKAGEPIVSLTSYHAHTAAIVDKHADFILVGDSLGMVMHGMESTVGVPLDLMIMHGKAVVRGTQKALIVVDMPFGTYEESPNMAFRNAARIMKETSCGAVKLEGGARMAETIRFLVERGIPVMAHIGLTPQSSHVMGGFKTQGRDEDTWAEHIADAHAVTEAGAFAVVLEGMVEPLAAKITKEIAIPTIGIGASVDCDGQILVLEDMLGLNEWTPKFVRVYSDLGPAIESAVERYADDVRARAFPGDDETYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PWK3</accession>
    <name>A0A1M5PWK3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CubicO group peptidase, beta-lactamase class C family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1896</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06265.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1896"/>
    <dbReference type="EnsemblBacteria" id="SHH06265">
        <property type="protein sequence ID" value="SHH06265"/>
        <property type="gene ID" value="SAMN05444003_1896"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001466">
        <property type="entry name" value="Beta-lactam-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00144">
        <property type="entry name" value="Beta-lactamase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Beta-lactamase" evidence="1">
        <location>
            <begin position="14"/>
            <end position="323"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00144"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH06265.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="346" mass="37774" checksum="135319FC7B981F89" modified="2017-03-15" version="1">MARTCIGPFAFCGLAVSRTGRDVYASQTAKGIEVDTQTMFRVASISKIITARAFLHAADEAHLSDPLYADISNLLGWTIRHPHHPETPITIGMIASHTAGLKDIDLSKIPDRLSQVNYTECFWPNPPGTYFSYSNLGYVLLAAATEAVSGQRFDKVAEAALANFGIIGGFNWSGVPADRRASASPTYRRDGPKFLPQIDQNVAETGVQWPKPMAPYQPIETTWAFSPQGGYRTSMEGLLALAKSLRTSKDQTALWSAKETPGDTLGGVFGQYGFGLQIFDQPAFYPNRIIGHFGTAYGFKGGVWFDCETETAFAYGLNGAEIEDESDEFAEEELRIFEGIAQLRGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q060</accession>
    <name>A0A1M5Q060_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Molybdopterin synthase catalytic subunit</fullName>
            <ecNumber evidence="4">2.8.1.12</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">MPT synthase subunit 2</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Molybdenum cofactor biosynthesis protein E</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">Molybdopterin-converting factor large subunit</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">Molybdopterin-converting factor subunit 2</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">SAMN05444003_1963</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Converts molybdopterin precursor Z into molybdopterin. This requires the incorporation of two sulfur atoms into precursor Z to generate a dithiolene group. The sulfur is provided by MoaD.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>2 [molybdopterin-synthase sulfur-carrier protein]-C-terminal Gly-NH-CH2-C(O)SH + cyclic pyranopterin phosphate + H2O = 2 [molybdopterin-synthase sulfur-carrier protein]-C-terminal Gly-Gly + 4 H(+) + molybdopterin</text>
            <dbReference type="Rhea" id="RHEA:26333"/>
            <dbReference type="Rhea" id="RHEA-COMP:12160"/>
            <dbReference type="Rhea" id="RHEA-COMP:12202"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:58698"/>
            <dbReference type="ChEBI" id="CHEBI:59648"/>
            <dbReference type="ChEBI" id="CHEBI:90619"/>
            <dbReference type="ChEBI" id="CHEBI:90778"/>
            <dbReference type="EC" id="2.8.1.12"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Cofactor biosynthesis; molybdopterin biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Heterotetramer of 2 MoaD subunits and 2 MoaE subunits. Also stable as homodimer. The enzyme changes between these two forms during catalysis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the MoaE family.</text>
    </comment>
    <dbReference type="EC" id="2.8.1.12" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07505.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900737.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1963"/>
    <dbReference type="EnsemblBacteria" id="SHH07505">
        <property type="protein sequence ID" value="SHH07505"/>
        <property type="gene ID" value="SAMN05444003_1963"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00344"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030366">
        <property type="term" value="F:molybdopterin synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00756">
        <property type="entry name" value="MoaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1170.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036563">
        <property type="entry name" value="MoaE_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003448">
        <property type="entry name" value="Mopterin_biosynth_MoaE"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02391">
        <property type="entry name" value="MoaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54690">
        <property type="entry name" value="SSF54690"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005046"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005426"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011950"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013858"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00025448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00026066"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00029745"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00030407"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00030781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00032474"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHH07505.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="149" mass="16401" checksum="7F93407F649B3B43" modified="2017-03-15" version="1">MSVHVQEEPFDAGQVLNKFSAQQEGAGAVVSFTGIVRDVAAGLDHMEIEHYPAMTAKAIQAICDEARERWALTGVQVIHRYGKLSADDPIMMVLTASAHRADAFAAADFLMDYLKSRAPFWKKETTSEGADWVAAKDEDEDALSRWSRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q0T1</accession>
    <name>A0A1M5Q0T1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative signal transducing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1954</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07319.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1954"/>
    <dbReference type="EnsemblBacteria" id="SHH07319">
        <property type="protein sequence ID" value="SHH07319"/>
        <property type="gene ID" value="SAMN05444003_1954"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018551">
        <property type="entry name" value="DUF2007"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011322">
        <property type="entry name" value="N-reg_PII-like_a/b"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09413">
        <property type="entry name" value="DUF2007"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54913">
        <property type="entry name" value="SSF54913"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF2007" evidence="1">
        <location>
            <begin position="13"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09413"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH07319.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="84" mass="9313" checksum="E47ED792A05EE6E7" modified="2017-03-15" version="1">MDKDRSRSYVGVMKELLRTNDPTVIAFATALLDGEGIACFAFDVNMSVLEGSIGIMPRRLMVADRDLFMAEAIMRDAEIDLGRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q2R6</accession>
    <name>A0A1M5Q2R6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Sugar transferase involved in LPS biosynthesis (Colanic, teichoic acid)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1976</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial sugar transferase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07773.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900748.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1976"/>
    <dbReference type="EnsemblBacteria" id="SHH07773">
        <property type="protein sequence ID" value="SHH07773"/>
        <property type="gene ID" value="SAMN05444003_1976"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000271">
        <property type="term" value="P:polysaccharide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003362">
        <property type="entry name" value="Bact_transf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02397">
        <property type="entry name" value="Bac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0270">Exopolysaccharide synthesis</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="38"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="domain" description="Bac_transf" evidence="4">
        <location>
            <begin position="33"/>
            <end position="221"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02397"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH07773.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="226" mass="25623" checksum="CAE0D9A2D10CFB4D" modified="2017-03-15" version="1">MTLHVRVNEDVAVSPTSSVESFKSQTFYKSYAKRGLDIALVLLFLPIVGPLVLLMAAVTALNGSNPFYSQLRVGKNGRFFRIWKIRTMTVDAEARLESYLKSNPEARAEWNKHQKLKNDPRITTVGRFLRKASLDELPQLFNVLQGSMSLVGPRPMMPEQEQYYFGSAYYSLRPGLTGLWQISERNESSFVDRVAFDDAYSRSMSFGTDMKTLLKTVLVVIRGTGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q386</accession>
    <name>A0A1M5Q386_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ATPase components of ABC transporters with duplicated ATPase domains</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2003</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08241.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900765.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2003"/>
    <dbReference type="EnsemblBacteria" id="SHH08241">
        <property type="protein sequence ID" value="SHH08241"/>
        <property type="gene ID" value="SAMN05444003_2003"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="1"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="297"/>
            <end position="502"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="35"/>
            <end position="42"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="330"/>
            <end position="337"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH08241.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="506" mass="55503" checksum="712A11FE73835F8A" modified="2017-03-15" version="1">MSLIQINSLGVTLSDPLFSDLTFTLNKGDRLGLIAANGRGKSTLLSVISGGLEQTTGEITTARGLRVGEVAQYISADQLNLTLYDLVLAALPQDQADYESWRVDVALSDLNVPYDIQHTTLSELSGGWQRTALLAATWITEPDVLLLDEPTNHLDLGRIGLLQNWLSGLPKDTAVILTSHDRAFLDEVTNRTLFLRPERSRIFNAPFSTARQELDIADEADARKFANDLNKAQQLRKQAAKLKNIGINSGSDLLVVKTKQLNERAAKLEAAAKPAHTERSAGDIKLTNSGTHAKALVTLDELDVETPDSRLLYKTGKKWIARGDRVVLLGSNGTGKTTLVRQVHEALLGQESPIKSAASVQLGYSDQHLTQFDMTDTPMQAVTGAFDIGDQRARGLLAGAGVSIQMQDTKIEALSGGQRARLAMLILRLQNPNFYLLDEPTNHLDIEGQEVLEHELCEHGVSCLLVSHDRSFVRNVGNRFWQIKGKRLEEVDGPSDFFAQELRASD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q4F7</accession>
    <name>A0A1M5Q4F7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uronate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2032</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the NAD(P)-dependent epimerase/dehydratase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08796.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900790.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2032"/>
    <dbReference type="EnsemblBacteria" id="SHH08796">
        <property type="protein sequence ID" value="SHH08796"/>
        <property type="gene ID" value="SAMN05444003_2032"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001509">
        <property type="entry name" value="Epimerase_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01370">
        <property type="entry name" value="Epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Epimerase" evidence="2">
        <location>
            <begin position="3"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007637"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH08796.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="276" mass="29624" checksum="6EFE8E5C7AE157F8" modified="2017-03-15" version="1">MKIVLTGAAGRLGGICREPLSKMCDELVSTDRVDSIDGLAANETYVKCDIGEREPVHALLEGADMVVHFGSIADEAPWGDILHSNILSAYNIWESAYQHGVKRIVFASSIHAVGMHKKHDFIGVDAAHRPDTYYGLAKCFTEDLASLYWDKRGLETVAMRIASASGKVCNSRALGSWLSDGDLVQLVQKSVTAPTTGFTIVYGVSNNDRAGLDNSGASALGYRPKDNAEEFAAEILANAPPQNNQDPEDMCHGGPFAVVPLGESGVEMIKARSVKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QK14</accession>
    <name>A0A1M5QK14_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Chaperone protein DnaJ</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">dnaJ</name>
        <name evidence="12" type="ORF">SAMN05444003_2167</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="8">Binds 2 Zn(2+) ions per monomer.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="8">The J domain is necessary and sufficient to stimulate DnaK ATPase activity. Zinc center 1 plays an important role in the autonomous, DnaK-independent chaperone activity of DnaJ. Zinc center 2 is essential for interaction with DnaK and for DnaJ activity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the DnaJ family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14427.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900984.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2167"/>
    <dbReference type="EnsemblBacteria" id="SHH14427">
        <property type="protein sequence ID" value="SHH14427"/>
        <property type="gene ID" value="SAMN05444003_2167"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031072">
        <property type="term" value="F:heat shock protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009408">
        <property type="term" value="P:response to heat"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06257">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd10719">
        <property type="entry name" value="DnaJ_zf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01152">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012724">
        <property type="entry name" value="DnaJ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002939">
        <property type="entry name" value="DnaJ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001623">
        <property type="entry name" value="DnaJ_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018253">
        <property type="entry name" value="DnaJ_domain_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008971">
        <property type="entry name" value="HSP40/DnaJ_pept-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001305">
        <property type="entry name" value="HSP_DnaJ_Cys-rich_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036410">
        <property type="entry name" value="HSP_DnaJ_Cys-rich_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036869">
        <property type="entry name" value="J_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00226">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01556">
        <property type="entry name" value="DnaJ_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00684">
        <property type="entry name" value="DnaJ_CXXCXGXG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00625">
        <property type="entry name" value="JDOMAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00271">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46565">
        <property type="entry name" value="SSF46565"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49493">
        <property type="entry name" value="SSF49493"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57938">
        <property type="entry name" value="SSF57938"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02349">
        <property type="entry name" value="DnaJ_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00636">
        <property type="entry name" value="DNAJ_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50076">
        <property type="entry name" value="DNAJ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51188">
        <property type="entry name" value="ZF_CR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0143">Chaperone</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 8" id="KW-0235">DNA replication</keyword>
    <keyword evidence="2 8 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 8" id="KW-0677">Repeat</keyword>
    <keyword evidence="6 8" id="KW-0346">Stress response</keyword>
    <keyword evidence="5 8 9" id="KW-0862">Zinc</keyword>
    <keyword evidence="4 8 9" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="J" evidence="10">
        <location>
            <begin position="5"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="domain" description="CR-type" evidence="11">
        <location>
            <begin position="139"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="repeat" description="CXXCXGXG motif" evidence="8">
        <location>
            <begin position="152"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="repeat" description="CXXCXGXG motif" evidence="8">
        <location>
            <begin position="169"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="repeat" description="CXXCXGXG motif" evidence="8">
        <location>
            <begin position="191"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="repeat" description="CXXCXGXG motif" evidence="8">
        <location>
            <begin position="205"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="CR-type" evidence="9">
        <location>
            <begin position="139"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="152"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="155"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="169"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="172"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="191"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="194"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="205"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="208"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00546"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51188"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHH14427.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="380" mass="40608" checksum="0886F5CDAB09492B" modified="2017-03-15" version="1">MSKRDYYETLGVSKGADAAEIKKAYRRKAKELHPDRNADNPDAEAQFKEANEAYEVLKDAEKKAAYDRFGHAAFEGGMGGGGGGPRGGHGDFASAFSDVFDDLFGDMMGGRGGGGRNRAQRGNDLRYNLRVKLEDAYAGMQKTITVPTAVSCGSCNGTGAEGGSEPQTCPTCSGMGKVRAQQGFFTVERTCPTCNGAGQIVKNPCKVCHGHGRVEKEKSLSVNIPAGVETGTRIRLAGEGEAGMRGGPSGDLYIFIEVQDHQIFERDGVNLYCRVPVSIASAALGGEIEVPTIDGGRSRVRIPEGSQSGRQMRLRGKGMPALRGAGTGDMFIELAVETPVKLTARQKEILKEFDTLSEENNPHGSSFFSSVKSFWDSMKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QY40</accession>
    <name>A0A1M5QY40_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Light-independent protochlorophyllide reductase subunit B</fullName>
            <shortName evidence="11">DPOR subunit B</shortName>
            <shortName evidence="11">LI-POR subunit B</shortName>
            <ecNumber evidence="11">1.3.7.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">bchB</name>
        <name evidence="14" type="ORF">SAMN05444003_2395</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>2 ADP + chlorophyllide a + oxidized 2[4Fe-4S]-[ferredoxin] + 2 phosphate = 2 ATP + 2 H2O + protochlorophyllide a + reduced 2[4Fe-4S]-[ferredoxin]</text>
            <dbReference type="Rhea" id="RHEA:28202"/>
            <dbReference type="Rhea" id="RHEA-COMP:10002"/>
            <dbReference type="Rhea" id="RHEA-COMP:10004"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33722"/>
            <dbReference type="ChEBI" id="CHEBI:33723"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:83348"/>
            <dbReference type="ChEBI" id="CHEBI:83350"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="1.3.7.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="11">Binds 1 [4Fe-4S] cluster per heterodimer. The cluster is bound at the heterodimer interface by residues from both subunits.</text>
    </comment>
    <comment type="pathway">
        <text evidence="11">Porphyrin-containing compound metabolism; bacteriochlorophyll biosynthesis (light-independent).</text>
    </comment>
    <comment type="subunit">
        <text evidence="11">Protochlorophyllide reductase is composed of three subunits; BchL, BchN and BchB. Forms a heterotetramer of two BchB and two BchN subunits.</text>
    </comment>
    <comment type="similarity">
        <text evidence="11">Belongs to the ChlB/BchB/BchZ family.</text>
    </comment>
    <dbReference type="EC" id="1.3.7.7" evidence="11"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19065.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901350.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2395"/>
    <dbReference type="EnsemblBacteria" id="SHH19065">
        <property type="protein sequence ID" value="SHH19065"/>
        <property type="gene ID" value="SAMN05444003_2395"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00671"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016730">
        <property type="term" value="F:oxidoreductase activity, acting on iron-sulfur proteins as donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016636">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036070">
        <property type="term" value="P:light-independent bacteriochlorophyll biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019685">
        <property type="term" value="P:photosynthesis, dark reaction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.550">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00353">
        <property type="entry name" value="ChlB_BchB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013580">
        <property type="entry name" value="LI-POR_suB-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000510">
        <property type="entry name" value="Nase/OxRdtase_comp1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042298">
        <property type="entry name" value="P-CP_red_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005969">
        <property type="entry name" value="Protochl_reductB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016209">
        <property type="entry name" value="Protochlorophyllide_Rdtase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00148">
        <property type="entry name" value="Oxidored_nitro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08369">
        <property type="entry name" value="PCP_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000163">
        <property type="entry name" value="PCP_ChlB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01278">
        <property type="entry name" value="DPOR_BchB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 11" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10 11" id="KW-0077">Bacteriochlorophyll biosynthesis</keyword>
    <keyword evidence="9 11" id="KW-0149">Chlorophyll biosynthesis</keyword>
    <keyword evidence="7 11" id="KW-0408">Iron</keyword>
    <keyword evidence="8 11" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 11" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2 11" id="KW-0602">Photosynthesis</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Oxidored_nitro" evidence="12">
        <location>
            <begin position="13"/>
            <end position="406"/>
        </location>
    </feature>
    <feature type="domain" description="PCP_red" evidence="13">
        <location>
            <begin position="457"/>
            <end position="501"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="11">
        <location>
            <begin position="409"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="11">
        <location>
            <position position="274"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="36"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>ligand shared with heterodimeric partner</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00353"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF00148"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF08369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="SHH19065.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="506" mass="55966" checksum="BB88CF1C3E913A44" modified="2017-03-15" version="1">MKLTVWTYEGPPHVGAMRVATAMKGLHFVLHAPQGDTYADLLFTMIERRDHRPPVTYTTFQARDLGSDTASLFKDAAQSAMTHFDPEAMIVGASCTAELIQDDPGGLAETMGIDIPVIPLELPSYSRKENFGADETFYQIVKSLSVAQAKTERITCNILGPTALGFRHRDDVEELIGLLSECGIDVNVVAPLNATPSDIACIPAAHFNVLLYPETGEAAARWLERTHDQPYTKTVPIGVGATRDFLAEVAQITGRDITPDESRLRLPWWSKSVDSTYLTGKRVFIFGDGTHVAAHARIARDEMGFEVVGIGCFNREQARNIRALAKEYGVEALITEDYLEVEQTIEALAPEMILGTQMERHIGKRLGIPCAVISAPVHVQDFPARYSPQVGFEGANVIFDTLVHPLVMGLEEHLLTMFREDFEFHDDAGASHHGGKAVERSETEIEEAVASSDNVVWLKDAERELKKIPFFVRGKARRNTESFAAERGLSEISIDTLYEAKAHFAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QYF0</accession>
    <name>A0A1M5QYF0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pyruvyl transferase EpsO</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2368</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18563.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901311.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2368"/>
    <dbReference type="EnsemblBacteria" id="SHH18563">
        <property type="protein sequence ID" value="SHH18563"/>
        <property type="gene ID" value="SAMN05444003_2368"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007345">
        <property type="entry name" value="Polysacch_pyruvyl_Trfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04230">
        <property type="entry name" value="PS_pyruv_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PS_pyruv_trans" evidence="1">
        <location>
            <begin position="39"/>
            <end position="293"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04230"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH18563.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="330" mass="37358" checksum="E37110D3265B08F6" modified="2017-03-15" version="1">MNSSTSSSLDLISEYDKALSPHVSSSEPYALLDFPDHYNVGDSAIYAGEMAYFDSKVGYSPAYVCTFSSYRRDVEDFAPEGPIFLHGGGNFGDVWPAHQDFRHEVLERYTGRKVVQLPQSIHFRDQKAVDKTAKAISGHGNFTLLVRDRESFDFASKAFDCEVVMCPDAAHNISNLSKGAAKAPVLSMIRKDREQRGDSVVPFLESLGEVKDWERQFWARSPMDRIVERVISPRIRQTGRLMARREKMFRRQAWNRVNYGVRLLSEGELVISDRLHVHIMSSLMNKKHISLDNYYGKIERYIAAWGNDGLVTQVSDLSSLKKAVTEAGYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QZ92</accession>
    <name>A0A1M5QZ92_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Group 4 capsule polysaccharide lipoprotein gfcB, YjbF</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2384</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18853.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901334.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2384"/>
    <dbReference type="EnsemblBacteria" id="SHH18853">
        <property type="protein sequence ID" value="SHH18853"/>
        <property type="gene ID" value="SAMN05444003_2384"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.360.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021308">
        <property type="entry name" value="GfcB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023373">
        <property type="entry name" value="YmcC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11102">
        <property type="entry name" value="YjbF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF159270">
        <property type="entry name" value="SSF159270"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH18853.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="211" mass="22525" checksum="4949963EB6F11415" modified="2017-03-15" version="1">MMRLASILCVLGLTACGPLNQGSPLEGAVTTIASAVRGTDAQQQPQITDALVNADEILFVTIRNFGTVTPMTKDTVVGTRETWISDGGATVTLEDGILVATRGLGIGLSGADTFGTRAAIRDGGGTVQRTHGYVDVLDQTRLAEMECQVTQVGSEEVEMPRGTQTLTKFEESCEGRRLVFKNEYWIDGTGDIVRSLQVTSPELGFLLLEKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-09-29" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QZK3</accession>
    <name>A0A1M5QZK3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Thioredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2420</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19555.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901386.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH19555">
        <property type="protein sequence ID" value="SHH19555"/>
        <property type="gene ID" value="SAMN05444003_2420"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00085">
        <property type="entry name" value="Thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012657743" evidence="1">
        <location>
            <begin position="23"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="domain" description="Thioredoxin" evidence="2">
        <location>
            <begin position="14"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH19555.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="133" mass="14577" checksum="A92FDCEBD5E09524" modified="2017-03-15" version="1">MDRRTFIATASAIALLPATANAIGLEYTPGLVKERLAAGETVFIDFAAHWCTTCRAQERVIGQLLGDNPAYEENITFVRVDWDQYGRGELATELNIPRRSTLVVLKGDEELGRLVARTSRGDIQGLLDTALNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R1G8</accession>
    <name>A0A1M5R1G8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">SH3 domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2452</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH20202.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2452"/>
    <dbReference type="EnsemblBacteria" id="SHH20202">
        <property type="protein sequence ID" value="SHH20202"/>
        <property type="gene ID" value="SAMN05444003_2452"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003646">
        <property type="entry name" value="SH3-like_bac-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08239">
        <property type="entry name" value="SH3_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00287">
        <property type="entry name" value="SH3b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51781">
        <property type="entry name" value="SH3B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SH3b" evidence="1">
        <location>
            <begin position="141"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH20202.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="317" mass="33654" checksum="91D9D60331F3FEF4" modified="2017-03-15" version="1">MALSAFVFATNSLAQDIRTTPLTFEEIGQYKVINDKIVGSEMLDLEVDVDESQVISVDLSSSNTGTYFNVSAIDSEEALFVGASEGPVADVTAPKTGRYVVRTYLVRSAARRGEETSFSIGIGINQPEFADSLAGGPDFWQVSGVGEGVTLNLRNGPSTRYSIIGKLRDGDSLENQGCRLTGSDRWCSVRVNSFGSTGWVAGQFLIESSKPMTPASLGNSPTGNGRPFDATSTVSCSTRPEKAQSECVAGVVRSGLGNAGVWIALEDGDELQILFENGVPVATSPGSEFEFDEIADVYVVNIGPARFEIPKAFIFGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R2U4</accession>
    <name>A0A1M5R2U4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ca-activated chloride channel family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2457</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH20319.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH20319">
        <property type="protein sequence ID" value="SHH20319"/>
        <property type="gene ID" value="SAMN05444003_2457"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13519">
        <property type="entry name" value="VWA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00327">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50234">
        <property type="entry name" value="VWFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VWFA" evidence="1">
        <location>
            <begin position="32"/>
            <end position="227"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH20319.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="233" mass="24972" checksum="AD31D412205D2512" modified="2017-03-15" version="1">MNSILKGSVTTVLTLASSGQAIIAQVGDCSVDAMLVFDGSASMAEITFETGLNTRIVEARKAVRYAMTNITNFRRVGLLTYSAGPLGACENLITKFPPIEDAADPIVNSIDTLEPSGLTPLTQAVRRAAEALKYQIRPGVVVLVTDCNETFGGRHCEMAQSLIAMAHDLTIHIIGFHAELDFFTWNSPEQNSDTAITVARCLSNETGGTFVTTESINELVSARQRTLGCPLFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RCW9</accession>
    <name>A0A1M5RCW9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">DNA polymerase III, delta subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2491</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23633.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901570.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2491"/>
    <dbReference type="EnsemblBacteria" id="SHH23633">
        <property type="protein sequence ID" value="SHH23633"/>
        <property type="gene ID" value="SAMN05444003_2491"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008921">
        <property type="entry name" value="DNA_pol3_clamp-load_cplx_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48019">
        <property type="entry name" value="SSF48019"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH23633.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="340" mass="36541" checksum="B2D4FA74DF37F8F2" modified="2017-03-15" version="1">MKLTGREAAGYLKTPNPDHSAILIFGADPMRVATKRQDVISALVGPNGDEEMRLTRINGADLRKDPALLSDAIKAQGFFPGHRVAFVEDATDGLSKIIDAALADWQAGDAQVLITAGQLTAKSALRKVVEGHSNAVAIGIYDDPPTRDEIEATLAENGLSVPNRDVMDAIMVLSQSLEPGDFRQTMEKVSLYKRGDTSELTVEDITACAPSGAEVDIDDVLDVVTFGRSDQIGPALRNLYAQGVTPVALCIGAMRHFRRLHVVASDPGGPGSGAGKLRPPVFGPRRDKIARQAGNWGRDRLERALTALTDTDLQLRSASTAPQLALMERTLIRLAMMGRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RCZ4</accession>
    <name>A0A1M5RCZ4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Putative ABC transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_2510</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ABC-4 integral membrane protein family. LolC/E subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24010.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901601.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2510"/>
    <dbReference type="EnsemblBacteria" id="SHH24010">
        <property type="protein sequence ID" value="SHH24010"/>
        <property type="gene ID" value="SAMN05444003_2510"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003838">
        <property type="entry name" value="ABC3_permease_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025857">
        <property type="entry name" value="MacB_PCD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02687">
        <property type="entry name" value="FtsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12704">
        <property type="entry name" value="MacB_PCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="6"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="263"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="286"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="331"/>
            <end position="364"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="384"/>
            <end position="404"/>
        </location>
    </feature>
    <feature type="domain" description="MacB_PCD" evidence="9">
        <location>
            <begin position="19"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="domain" description="FtsX" evidence="8">
        <location>
            <begin position="314"/>
            <end position="406"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF12704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH24010.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="416" mass="44397" checksum="AA05DA0C9B043642" modified="2017-03-15" version="1">MILRLAIASLAARAVTVCMTILAIALSVALFLGVEKVRTGAKGSFADTISGTDLIVGARSGSVQLLLYSVFRIGNATNNITWESYQDIADRPEVDWIVPISLGDSHRQFRVMGTTSEFFDHYKYRQGQSLALQEGALMGDLFDTVIGADVAETLGYSVGDPIVVSHGIASFADHKDQPFRISGILEKTGTPVDRTVIVSLEAIEAIHVDWQNGAQIPGQSTPPDVIRQMDLQPQAITAALVGLESPLQTFALQRAINQYPEEPLLAILPGVALQDLWAIVGVAETALLAVSAMVVVTALIGLMATIFASLTERRREMAIYRAMGARPSTIFGLLILEAVLVAAAGAIFGLIFLYFGLSIAQPLIDRNFGLWLDIAPPGGQEALILLAVVAAGAIVSILPALRAYKLSLADGMMVKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RD43</accession>
    <name>A0A1M5RD43_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2523</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the SDHAF4 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24272.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901618.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2523"/>
    <dbReference type="EnsemblBacteria" id="SHH24272">
        <property type="protein sequence ID" value="SHH24272"/>
        <property type="gene ID" value="SAMN05444003_2523"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012875">
        <property type="entry name" value="SDHF4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07896">
        <property type="entry name" value="DUF1674"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="13"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH24272.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="58" mass="6466" checksum="7832172D7BBB8E59" modified="2017-03-15" version="1">MSETQKDLPPAAKRALAEAEERRKAAKQIETPKELGGRDGPEPVRYGDWEKKGIAVDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RGQ5</accession>
    <name>A0A1M5RGQ5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2584</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25537.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH25537">
        <property type="protein sequence ID" value="SHH25537"/>
        <property type="gene ID" value="SAMN05444003_2584"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012522409" evidence="1">
        <location>
            <begin position="25"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH25537.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="266" mass="30851" checksum="DAF8D23C7B352CC5" modified="2017-03-15" version="1">MSNWPRSLIYILLVAMFGVFPALAASGDTSDEIVHDERFWDQLFVDAVHSREACNLDFKPCRAPLQKRVEDYYLRVRGETKFLSDEVAEAASRSLTRVIEDIYRTTGLRPIQGVPEHASNFIFLLFFNEEEYQSDPENYILARIAPPTLRFSEKRLEFFSWFRSSHLDCTLVTTPYPDGIIRDVQIWIKVDVSTEVVSNCIAEEFFNSFGLDDTPEFESIFDWPTVVDGEIADGKLTERHLSFLRRLYEPEMIPNQAEEATWALIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RGT4</accession>
    <name>A0A1M5RGT4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Exodeoxyribonuclease-3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2583</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the DNA repair enzymes AP/ExoA family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25515.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901709.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2583"/>
    <dbReference type="EnsemblBacteria" id="SHH25515">
        <property type="protein sequence ID" value="SHH25515"/>
        <property type="gene ID" value="SAMN05444003_2583"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008853">
        <property type="term" value="F:exodeoxyribonuclease III activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09086">
        <property type="entry name" value="ExoIII-like_AP-endo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004808">
        <property type="entry name" value="AP_endonuc_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020847">
        <property type="entry name" value="AP_endonuclease_F1_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037493">
        <property type="entry name" value="ExoIII-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43250">
        <property type="entry name" value="PTHR43250"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="SSF56219"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00633">
        <property type="entry name" value="xth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00726">
        <property type="entry name" value="AP_NUCLEASE_F1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51435">
        <property type="entry name" value="AP_NUCLEASE_F1_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endo/exonuclease/phosphatase" evidence="2">
        <location>
            <begin position="6"/>
            <end position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007092"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH25515.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="262" mass="29260" checksum="998E4622B6E4CB59" modified="2017-03-15" version="1">MSFTLATWNINSVRLREDIVAKLMADEAPDVLCLQECKSPVEKIPQEQFQSLGYTHMVARGQKGYNGVAIFSKIPMVEAGAEDYANLGHARHIAGKLENGVTVHNFYVPAGGDVADREVNEKFGQKLDYLAEMRDAFHKDAPKKSILVGDLNIAPREDDVWDHKKLLKVVSHTPVEVEALAEVQDAGAWVDVTRTDIPDGKLYSWWSYRAKDWDVADKGRRLDHVWATPDIAGAAHGSRVLRDARGWEKPSDHAPVFATFDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RUF5</accession>
    <name>A0A1M5RUF5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">NitT/TauT family transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2702</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH29935.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901950.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2702"/>
    <dbReference type="EnsemblBacteria" id="SHH29935">
        <property type="protein sequence ID" value="SHH29935"/>
        <property type="gene ID" value="SAMN05444003_2702"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="32"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="92"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="122"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="150"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="202"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="246"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="100"/>
            <end position="273"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH29935.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="281" mass="30462" checksum="4E557E1206781842" modified="2017-03-15" version="1">MSWFIASLVFWICAWLLNIRLASSKASDTLAVRIIVPLLFGISILVLWEGLVRGFEVSQVILPAPSQIGATFAGSLETLWVDFQQTVLKGALRGFAIGAAAAFFTAILIDRSSFLTRGLLPIGNFVAALPIVGIAPILVNWFGFDWQSKAAVVVVMVFFPILVNTVQGLREADTMQRDLMRTYAAGYTQTLLKLRLPAAMPFIFNGLKIATTLALIGAIVAEYFGSPIRGMGFRISTGVGSLSIDLVWAEIAVAALAGSAFYGIVAFIEKRVTFWHPSQRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RUT5</accession>
    <name>A0A1M5RUT5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized membrane protein HdeD, DUF308 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2696</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH29798.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901939.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2696"/>
    <dbReference type="EnsemblBacteria" id="SHH29798">
        <property type="protein sequence ID" value="SHH29798"/>
        <property type="gene ID" value="SAMN05444003_2696"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005325">
        <property type="entry name" value="DUF308_memb"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03729">
        <property type="entry name" value="DUF308"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="30"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="56"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="83"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="108"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="141"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="165"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH29798.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="203" mass="22091" checksum="1AC5E4DA63303900" modified="2017-03-15" version="1">MSNSETPEAEVLDPEIVEFGEALSGRLSNLWWTFLVRGILAAVVGIAALFWPTDSISLLLQLFGLLLILDGVFAFFGFGRQGAAFGIGLLTIALGLVFLLWPEGTARTASWLLGAFALLSGLGSLYVWFRLPKEEPERGMVRNAGIVGLLIGLALVIWPGVGPVVLSWMIAFCALSLAFVLFWLALRFREANKRVKAEVINPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RVA6</accession>
    <name>A0A1M5RVA6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Predicted dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2717</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30252.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901972.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2717"/>
    <dbReference type="EnsemblBacteria" id="SHH30252">
        <property type="protein sequence ID" value="SHH30252"/>
        <property type="gene ID" value="SAMN05444003_2717"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004104">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000683">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01408">
        <property type="entry name" value="GFO_IDH_MocA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02894">
        <property type="entry name" value="GFO_IDH_MocA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GFO_IDH_MocA" evidence="1">
        <location>
            <begin position="5"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="domain" description="GFO_IDH_MocA_C" evidence="2">
        <location>
            <begin position="142"/>
            <end position="363"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH30252.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="366" mass="40029" checksum="1B51E786954325FD" modified="2017-03-15" version="1">MKDIGIGIVGGGYMGKAHSVAFAAVASVFDTTLRPRLVRICASSDESAERYRATYGFETATSDWRELVEDPNVEAVVIASPQKTHRAIAEAAFALGKPVLCEKPLGISVEESQAMVDAAEKAGVTNMVGFNYVRTPATQFARKLIEDGRIGKVAYFRGEMTEDFFADPEIGGWRGQGAANGCMGDLSPHMINCARALMGPITSLCAIAETVHDTRAGEKVTNDDQAQMMCRFENGVQGHMFFSRVATGRKMGYAYEVHGTHGHIRFDQEDQNALWLYTTEGPEVERGFRKILTGPEHPDYLPFCQGPGHGTGYQDQIIIEAKDFLTAIATKTDIWPTFREGLEVNRVVAAVLDSSAKQAWVNVADY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RXP3</accession>
    <name>A0A1M5RXP3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 13 15">tRNA (guanine-N(1)-)-methyltransferase</fullName>
            <ecNumber evidence="6 13 15">2.1.1.228</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">M1G-methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">tRNA [GM37] methyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="primary">trmD</name>
        <name evidence="17" type="ORF">SAMN05444003_2749</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17 18">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 13 15">Specifically methylates guanosine-37 in various tRNAs.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 13 15">
            <text>guanosine(37) in tRNA + S-adenosyl-L-methionine = H(+) + N(1)-methylguanosine(37) in tRNA + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:36899"/>
            <dbReference type="Rhea" id="RHEA-COMP:10145"/>
            <dbReference type="Rhea" id="RHEA-COMP:10147"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:73542"/>
            <dbReference type="ChEBI" id="CHEBI:74269"/>
            <dbReference type="EC" id="2.1.1.228"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="5 13 15">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3 13 15">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 13 15">Belongs to the RNA methyltransferase TrmD family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.228" evidence="6 13 15"/>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902020.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2749"/>
    <dbReference type="EnsemblBacteria" id="SHH30969">
        <property type="protein sequence ID" value="SHH30969"/>
        <property type="gene ID" value="SAMN05444003_2749"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052906">
        <property type="term" value="F:tRNA (guanine(37)-N(1))-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd18080">
        <property type="entry name" value="TrmD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1270.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00605">
        <property type="entry name" value="TrmD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029028">
        <property type="entry name" value="Alpha/beta_knot_MTases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002649">
        <property type="entry name" value="tRNA_m1G_MeTrfase_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023148">
        <property type="entry name" value="tRNA_m1G_MeTrfase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029026">
        <property type="entry name" value="tRNA_m1G_MTases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016009">
        <property type="entry name" value="tRNA_MeTrfase_TRMD/TRM10"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46417">
        <property type="entry name" value="PTHR46417"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01746">
        <property type="entry name" value="tRNA_m1G_MT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000386">
        <property type="entry name" value="tRNA_mtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75217">
        <property type="entry name" value="SSF75217"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00088">
        <property type="entry name" value="trmD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 13 15" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 13 15" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11 13 14" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="10 13 15" id="KW-0808">Transferase</keyword>
    <keyword evidence="12 13 15" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="tRNA_m1G_MT" evidence="16">
        <location>
            <begin position="54"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="13 14">
        <location>
            <begin position="164"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13 14">
        <location>
            <position position="144"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012807"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00014679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PIRSR" id="PIRSR000386-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="RuleBase" id="RU003464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF01746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="SHH30969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="262" mass="28816" checksum="FA2E601BEBF868BF" modified="2017-03-15" version="1">MSAPKSHGRKSIQATFTPRELMTDNPDLAGVWTAQIITLFPTAFPGVLGESLTGKALKDGIWQLQTIDLRRYGIGKHKNVDDTPAGGGAGMVLRADVLERAIMEARADATGRMPLIYLSPRGPRFDQAMAQRLAKADGVTMLCGRFEGVDERVLEHFDIQEVSLGDFVMTGGEIAAQAMIDATVRLLPGVLGNADSAVEESFSNGLLEHPQYTKPAEWNARHIPEVLLSGNHAKIAEWRREMSEKLTKERRPDLIEKLEKDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S1B4</accession>
    <name>A0A1M5S1B4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">N-terminal double-transmembrane domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2787</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31823.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902076.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2787"/>
    <dbReference type="EnsemblBacteria" id="SHH31823">
        <property type="protein sequence ID" value="SHH31823"/>
        <property type="gene ID" value="SAMN05444003_2787"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024163">
        <property type="entry name" value="Aerotolerance_reg_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011933">
        <property type="entry name" value="Double_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025297">
        <property type="entry name" value="DUF4159"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07584">
        <property type="entry name" value="BatA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13709">
        <property type="entry name" value="DUF4159"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02226">
        <property type="entry name" value="two_anch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="61"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="domain" description="BatA" evidence="2">
        <location>
            <begin position="8"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4159" evidence="3">
        <location>
            <begin position="680"/>
            <end position="898"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07584"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13709"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH31823.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="918" mass="99584" checksum="666FD3D67C432DAE" modified="2017-03-15" version="1">MWPIGPIGFLSPWLLLGLLALPILWILLRAVPPAPIRRRFPGVALLIGLTDDESQTDRTPWWLLLLRMMAVAAAIIGFAGPVLNPQNQETGDGPLLIIADGTWADARDWNARIERIDALLNDAARQGRPVALLSLTDLPETTLFQSASAVAQTLPNLQPNPWEPAEDALFDWINTLPGDFDTYWLSDGLARKSRDLLLTDFEARGSVTVFQTPRQTFGLRPARFVDGEILVSATRTPIGNDTTIPVVAIGLDPAGVERQLVTVDLDFTAGEPVAERAIVVPPELRNRITRFEIDGVRSAAAISLTDDALKRREVALLSGAGDQEQLDLLDPLFYLREALEPTADLIDGTLSDMLLANPDAIVLADFATLASDETEGLLEWVENGGLLVRFAGPRLAASEIGRSDEDPLLPVRLRQGGRSIGGTMSWGEPKALAPFAETSPFFGLQVPDDVEVTAQVVAQPDPTLASRVIAQLADGTPLVTRKQVGEGSVILFHVTANAEWSSLPLSGLFVQMLERLAISTRPSDIEAGELEGTTWLPEDVLDAFGRLYDGRTLAGVDGSLLENPSPGPELQPGLYSGNDRLIAVNVIDAETALATAQWPNSVTVEGLDVSEETDLKGWFLAAATLLLAIDVIASLAVGGRLRGPRADITAALLALVLLTPQWAEAQEDEFALNATSNVVLGYVLTGDEHTDEISEAGLRGLSRTLFQRTTIEPSAPVGVNIETDELAFFPFLYWPITPDQGLPSREAYGKLNRYLRSGGMILFDTGDADNASFGSSSPEGRTLRAIARTLDIPALEPIPQDHVLTRTFYLLQDFPGRYASRDIWVEAAPADAELAEGMPFRNLNDGVTPVVIGGNDWARAWAIDDVGNRMFPVGRGRTGERQRELAYRFGVNLIMHVLTGNYKSDQVHVPDLLERLGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S5W2</accession>
    <name>A0A1M5S5W2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Choline dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2869</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33835.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902203.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2869"/>
    <dbReference type="EnsemblBacteria" id="SHH33835">
        <property type="protein sequence ID" value="SHH33835"/>
        <property type="gene ID" value="SAMN05444003_2869"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016614">
        <property type="term" value="F:oxidoreductase activity, acting on CH-OH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000172">
        <property type="entry name" value="GMC_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007867">
        <property type="entry name" value="GMC_OxRtase_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05199">
        <property type="entry name" value="GMC_oxred_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00732">
        <property type="entry name" value="GMC_oxred_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GMC_OxRdtase_N" evidence="1">
        <location>
            <begin position="4"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="domain" description="GMC_oxred_C" evidence="2">
        <location>
            <begin position="428"/>
            <end position="486"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05199"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH33835.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="497" mass="53863" checksum="2C92760E18FEE559" modified="2017-03-15" version="1">MDADVIIIGSGMGGATLAASLAPTGRRILILERGERLQPSAQDRDPNAIFGEGTFRPNETWLDGTDKPFNPGNYYYVGGNSKIYGAVLIRYRAEDFEPIEHFGGSTPGWPISYADLETDYQAAEDLYAVRGTITEDPTEPPHSGGYAHQPVPDEPDITELRHRLKRAGLTPCSLPLGVDIDEWLDGGQTTWDAFPNTGEGKMDAETGGLKAALRHDNVKLKTGCRVASLKTDTDGKISAVICETTNGTETLRAPIVVLAAGAVQSAALLLASANEGNPNGLANSSDQVGRNFMNHNCSAVLAMHPLRKNRSVYQKTLMVNDFYLKDGNKPPLGNIQMLGKITGSILAASSKLPKPLANLIAARSFDFYAMSEDLPNPESRVTLKDGLIKLDWQRSNWEAHERLVKELKRKLKAAGFPIVLSQPFDRRTPSHQCGTARMGDDPTSSVVDSFCRSHDHENLFIVDASVLPTSAAVNPALTIAALALRAGRHMTETEFVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S601</accession>
    <name>A0A1M5S601_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, LacI family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2872</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33916.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2872"/>
    <dbReference type="EnsemblBacteria" id="SHH33916">
        <property type="protein sequence ID" value="SHH33916"/>
        <property type="gene ID" value="SAMN05444003_2872"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01392">
        <property type="entry name" value="HTH_LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000843">
        <property type="entry name" value="HTH_LacI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046335">
        <property type="entry name" value="LacI/GalR-like_sensor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00356">
        <property type="entry name" value="LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13377">
        <property type="entry name" value="Peripla_BP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00354">
        <property type="entry name" value="HTH_LACI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50932">
        <property type="entry name" value="HTH_LACI_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH lacI-type" evidence="4">
        <location>
            <begin position="13"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH33916.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="341" mass="36772" checksum="97E4D4C68358DD11" modified="2017-03-15" version="1">MESGAKPLMRHRPTILDVAKQAGVSKSTVSLVLQGNAAVKESTRVAVRKAMADIGYVYNRSAATLRSASSGLIGLVINDLRNPFFTEFAALFQMELARHGFATVLANSDEDPALQVQMISSLVEHGVSGFIISPSYGGDEEALAILNAAQTPTMQVFRSLAGPECHHPFIAPDYQHGSQLAAEHLFAKGRKQVAFLGGLEGRPVTEERMSGYLQVLKKRGDEPIILTGQATRTFGKETISKLRQDHPDVDGVICFNDLVALGVLSACAEEGIAVGADLKVVGFDDIEDCQDSYPPLSSISSNIPEFAKATAQQILGWIKEDEKPKPLVRSPVELIERASSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SBP5</accession>
    <name>A0A1M5SBP5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, AsnC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2883</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH35899.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902258.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2883"/>
    <dbReference type="EnsemblBacteria" id="SHH35899">
        <property type="protein sequence ID" value="SHH35899"/>
        <property type="gene ID" value="SAMN05444003_2883"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000485">
        <property type="entry name" value="AsnC-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019888">
        <property type="entry name" value="Tscrpt_reg_AsnC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019887">
        <property type="entry name" value="Tscrpt_reg_AsnC/Lrp_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01037">
        <property type="entry name" value="AsnC_trans_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00033">
        <property type="entry name" value="HTHASNC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00344">
        <property type="entry name" value="HTH_ASNC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50956">
        <property type="entry name" value="HTH_ASNC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH asnC-type" evidence="4">
        <location>
            <begin position="8"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH35899.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="157" mass="17868" checksum="52084CD48B443BED" modified="2017-03-15" version="1">MAEKNTNLDQYDLQILRLLNRDGRMSVTHLSEEIALSANATSERLRRLQRDGYIEGFHAKLSAEALGQTLTCFVEVKLERVSEDVFDAFSKAARLSDEIEECYLTAGGFDYLLKTRHASMQAFREFLTGRLLRLPGVRETRTFTVMEAVKESFGPKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SFI0</accession>
    <name>A0A1M5SFI0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Thioredoxin reductase</fullName>
            <ecNumber evidence="3">1.8.1.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2931</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>[thioredoxin]-dithiol + NADP(+) = [thioredoxin]-disulfide + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:20345"/>
            <dbReference type="Rhea" id="RHEA-COMP:10698"/>
            <dbReference type="Rhea" id="RHEA-COMP:10700"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:50058"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.8.1.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
        <text evidence="4">Binds 1 FAD per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family.</text>
    </comment>
    <dbReference type="EC" id="1.8.1.9" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37038.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902536.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2931"/>
    <dbReference type="EnsemblBacteria" id="SHH37038">
        <property type="protein sequence ID" value="SHH37038"/>
        <property type="gene ID" value="SAMN05444003_2931"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004791">
        <property type="term" value="F:thioredoxin-disulfide reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019430">
        <property type="term" value="P:removal of superoxide radicals"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008255">
        <property type="entry name" value="Pyr_nucl-diS_OxRdtase_2_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005982">
        <property type="entry name" value="Thioredox_Rdtase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01292">
        <property type="entry name" value="TRX_reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00573">
        <property type="entry name" value="PYRIDINE_REDOX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="3" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="4" id="KW-0521">NADP</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2 3" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="5">
        <location>
            <begin position="8"/>
            <end position="298"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH37038.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="313" mass="33550" checksum="D17B2FA255FE8BDF" modified="2017-03-15" version="1">MSETRHTKVLIIGSGPAGYSAGVYASRAMLEPILVQGIEPGGQLTTTTEVENWPGDTEVQGPDLMVRMEAHARAMGCEIIGDIITSLDLQNRPFTAQSDSGTAYTADAVILCTGARAKWLGLPSEETFKGFGVSACATCDGFFYRGQEIVVVGGGNTAVEEALFLTNFASKVTLIHRRDELRAEKILQDRLFKNEKIEPLWFHEVDEVIGADSPLGVEGVKVKHTKTGEITEIPCKGVFVAIGHAPASELVKDQLETHMGGYVKVETGSTRTAIPGVFAAGDLTDHIYRQAVTSAGMGCMAALDAEKFLAENE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SG35</accession>
    <name>A0A1M5SG35_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Peptidase family M48</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_2951</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="6">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the peptidase M48 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37486.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2951"/>
    <dbReference type="EnsemblBacteria" id="SHH37486">
        <property type="protein sequence ID" value="SHH37486"/>
        <property type="gene ID" value="SAMN05444003_2951"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001915">
        <property type="entry name" value="Peptidase_M48"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01435">
        <property type="entry name" value="Peptidase_M48"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 6" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="1 6" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="4 6" id="KW-0862">Zinc</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009913714" evidence="7">
        <location>
            <begin position="24"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M48" evidence="8">
        <location>
            <begin position="93"/>
            <end position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH37486.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="242" mass="26151" checksum="4A19C150EF9D4C93" modified="2017-03-15" version="1">MIDRMRLPTIALLLAVLASCAPAPQQRPPDGTLSKAPASLFRPIEERVPPREARRNFVAVVNAVEPVAERVCRERTNDVNCDFRIVVDDTVNASPNAFQTEDDDGRPIIGFTVSLIAVTRNRDELAFIMAHEAAHHIRGHLQQSRQNAQLGATIAGALFGGEGAAAEAAQQIGAAIGFRTYSQDFELEADALGTIIAARAGFDPINGAQFFNRIPDPGNRFLGTHPPNRERLATVQRVAAGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SHD7</accession>
    <name>A0A1M5SHD7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2975</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38007.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH38007">
        <property type="protein sequence ID" value="SHH38007"/>
        <property type="gene ID" value="SAMN05444003_2975"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH38007.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="144" mass="16595" checksum="51F028F663A8D8BF" modified="2017-03-15" version="1">MSPKIVVAGAHDWIETNGRQSREFIEKLLGPGRRRNDQRSRIILALAKWEKTTFYATDINEKLKELFPVSLKNRRVQVTRALNKLASGDARLLKFDEETGRYRIATPKLRSVLRHVVYQDPADESALIREDNIPEANRLDSMGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SLZ4</accession>
    <name>A0A1M5SLZ4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Probable multidrug resistance protein NorM</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_3016</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Multidrug efflux pump.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38923.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902462.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3016"/>
    <dbReference type="EnsemblBacteria" id="SHH38923">
        <property type="protein sequence ID" value="SHH38923"/>
        <property type="gene ID" value="SAMN05444003_3016"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042910">
        <property type="term" value="F:xenobiotic transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd13136">
        <property type="entry name" value="MATE_DinF_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044644">
        <property type="entry name" value="DinF-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002528">
        <property type="entry name" value="MATE_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42893">
        <property type="entry name" value="PTHR42893"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01554">
        <property type="entry name" value="MatE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00797">
        <property type="entry name" value="matE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="43"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="92"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="134"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="161"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="189"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="240"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="271"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="311"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="352"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="385"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="408"/>
            <end position="426"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00020268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH38923.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="437" mass="47232" checksum="4E28AD12B046F644" modified="2017-03-15" version="1">MTEAALTHRRVLAIAVPIVISNVSVPLLGVVDTAVVGQMGEAAPLGAVGLGAIIITSIYWIFGFLRMGTVGLTSQAQGANDQTEVSVLLTRVLLIGLAGGLAIIALQAGLFWVALQMSPASDEVEALTRDYLAVRVWSAPAMIAIYGVTGWLIALERTRAVLAVQVGMNLLNIVLDIVFVLQFQWGVVGVAWATFLAEWFGLALGLWLCRENFKTATWRLWSRVLERSSLIKMAEVNTDIMIRSVLLQAIFLSFMLFGARFGDVTLAANQVLLQFLMLSSFAMDGVAFAAESLVGQAYGAKKPQDVRRASILTGLWAGGICIASSILILALGPWGIDLITTAEDVRAEARDYLIYMALAPILGFASWMLDGIFIGATRTRDMRNMMIVSTIVYFAAVIPLMATFGNHGLWIGMLISFVVRGITLAIRYPALERSALA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SR45</accession>
    <name>A0A1M5SR45_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3055</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH40992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902583.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3055"/>
    <dbReference type="EnsemblBacteria" id="SHH40992">
        <property type="protein sequence ID" value="SHH40992"/>
        <property type="gene ID" value="SAMN05444003_3055"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH40992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="254" mass="26836" checksum="7DFE1C5E217D939D" modified="2017-03-15" version="1">MTLPQTPSFRLEGKRALVAGASSGIGLACAVALAEAGAHVTLAARRSDKLRDLQDQLTAKSLLADTLALDVSNIDATRAAIEANDPFDISLNAAGLALHTPATETNPEDYDAVSNINVRGAYFLNQAVAKKLIAAGKPGSLITISSQMGYVGGQDRAVYCATKHAVEGMTKAMAIEWGKAGIRVNTICPTFIVTDLTRPTFEDPEKRAWIMDKIKLDRVGEVEDIMGAAVFLASDASALMTGTHMMIDGGWTAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SS69</accession>
    <name>A0A1M5SS69_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3045</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH40823.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH40823">
        <property type="protein sequence ID" value="SHH40823"/>
        <property type="gene ID" value="SAMN05444003_3045"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH40823.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="286" mass="31317" checksum="B39DAFC6D21ED4A9" modified="2017-03-15" version="1" fragment="single">TTQCLGLPPTGPGNHRPDGTQANNALTVKLDQLGGADQPLAYDYVGFGSFELALYDNRLKWRGFDYGFFDKIVSQVEPNVSKVADDVYFLSWNTPGGTDNVVVNFDQDTVHAHLWSGPSSVDDYSDFDQIHGQILCEPSKECPFPEGAPTGSFGMAYHFIANSWKYDLPSLTEFQPPLVQSHTDGLAELTGKPLQYEGDSGAVTLQINDQETLVSIDRAAAESFHTHVTKIADGIYFISWLDEPISGDHIVFNKNAMQVFDHVTSEAVRGEQILAATCFGPAEDCS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SW60</accession>
    <name>A0A1M5SW60_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">50S ribosomal protein L17</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rplQ</name>
        <name evidence="6" type="ORF">SAMN05444003_3154</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="3">Part of the 50S ribosomal subunit. Contacts protein L32.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 4">Belongs to the bacterial ribosomal protein bL17 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42734.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902731.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3154"/>
    <dbReference type="EnsemblBacteria" id="SHH42734">
        <property type="protein sequence ID" value="SHH42734"/>
        <property type="gene ID" value="SAMN05444003_3154"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1030.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01368">
        <property type="entry name" value="Ribosomal_L17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000456">
        <property type="entry name" value="Ribosomal_L17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036373">
        <property type="entry name" value="Ribosomal_L17_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14413">
        <property type="entry name" value="PTHR14413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01196">
        <property type="entry name" value="Ribosomal_L17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64263">
        <property type="entry name" value="SSF64263"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00059">
        <property type="entry name" value="L17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01167">
        <property type="entry name" value="RIBOSOMAL_L17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="1 3 4" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU000660"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000661"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH42734.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="141" mass="15915" checksum="B51235DA3F5B240A" modified="2017-03-15" version="1">MRHARGYRRLNRTHEHRKALFANMAGSLIEHEQIKTTVPKAKELKRVVEKLVTLGKRGDLHARRQAAARLKQDSHVAKLFDVLGPRYANRNGGYVRVIKAGFRYGDMAPMAIIEFVERDVDAKGAGDRARLEAEEAAAVEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T6D2</accession>
    <name>A0A1M5T6D2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3262</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46272.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3262"/>
    <dbReference type="EnsemblBacteria" id="SHH46272">
        <property type="protein sequence ID" value="SHH46272"/>
        <property type="gene ID" value="SAMN05444003_3262"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022201">
        <property type="entry name" value="DUF3726"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12525">
        <property type="entry name" value="DUF3726"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH46272.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="191" mass="20516" checksum="B954514CBDA9ED35" modified="2017-03-15" version="1">MDLSMNEVEAQARKAAKGADYSWGEAEDIGKAVRWLCKRGVNGCEHLAQLLLAKPDPKNCPIRLGILILDNAKNLGDTLTSFGSVAEPALVIPFAAFASAQIERPLAIQAGKCSVIVSESAFEITGEPMRNKSVIEVKATAKSPKLMTSVSRASPQRETWETLDKFAHRTYAPATEESRMLGAGAGISDND</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T783</accession>
    <name>A0A1M5T783_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Urease accessory protein UreG</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">ureG</name>
        <name evidence="6" type="ORF">SAMN05444003_3276</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer. UreD, UreF and UreG form a complex that acts as a GTP-hydrolysis-dependent molecular chaperone, activating the urease apoprotein by helping to assemble the nickel containing metallocenter of UreC. The UreE protein probably delivers the nickel.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the SIMIBI class G3E GTPase family. UreG subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46615.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902955.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3276"/>
    <dbReference type="EnsemblBacteria" id="SHH46615">
        <property type="protein sequence ID" value="SHH46615"/>
        <property type="gene ID" value="SAMN05444003_3276"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016151">
        <property type="term" value="F:nickel cation binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01389">
        <property type="entry name" value="UreG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003495">
        <property type="entry name" value="CobW/HypB/UreG_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004400">
        <property type="entry name" value="UreG"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31715">
        <property type="entry name" value="PTHR31715"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02492">
        <property type="entry name" value="cobW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00101">
        <property type="entry name" value="ureG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0143">Chaperone</keyword>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="3 4" id="KW-0996">Nickel insertion</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="cobW" evidence="5">
        <location>
            <begin position="10"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="14"/>
            <end position="21"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022988"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01389"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02492"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH46615.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="203" mass="21590" checksum="48DF150934BDF2D8" modified="2017-03-15" version="1">MTKLNGPLRVGIGGPVGAGKTTLTAKLSEQLKAEYSVGVITNDIYTQEDAEALTRMQILPSDRIIGVETGGCPHTAIREDASINLAAVAEMRERHAELDLVLIESGGDNLSATFSPELADLTVYVIDVAAGEEIPRKGGPALTRSDILVINKTDLAPYVGASLEVMDRDSQKMRGGRPYVFASLRNNNGVQDVVDLIKSKGGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TAV7</accession>
    <name>A0A1M5TAV7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Predicted N-formylglutamate amidohydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3312</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000009">
        <property type="protein sequence ID" value="SHH47917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3312"/>
    <dbReference type="EnsemblBacteria" id="SHH47917">
        <property type="protein sequence ID" value="SHH47917"/>
        <property type="gene ID" value="SAMN05444003_3312"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007709">
        <property type="entry name" value="N-FG_amidohydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011227">
        <property type="entry name" value="UCP029730"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05013">
        <property type="entry name" value="FGase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF029730">
        <property type="entry name" value="UCP029730"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH47917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="235" mass="25738" checksum="829B6B8B8A8E551C" modified="2017-03-15" version="1">MLIVCEHASAHIPSEFNQLGLSNDAANSHVAWDPGALPVAQRIAADLDAVLVYGTMSRLLYDCNRPPEAPSAIPTRSEVFDIPGNARLTAAEREARVARIYTPFSEALADEIACHLETLKLMVTIHSFTPVFNGVAREAEIGVLHGEDARFAHAMMQSKPQDAHFRIRLNEPYAAVDGVAHTLDQHGQANDLPSVMIEIRNDLISTDADQRAMALFLTDWVKQTLDQVSYRGGVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5KZ91</accession>
    <name>A0A1M5KZ91_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0013</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58182.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0013"/>
    <dbReference type="EnsemblBacteria" id="SHG58182">
        <property type="protein sequence ID" value="SHG58182"/>
        <property type="gene ID" value="SAMN05444003_0013"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="49"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="95"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="145"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG58182.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="366" mass="39480" checksum="8DD654B9AB6673F8" modified="2017-03-15" version="1">MSDPVTNMEIEDVLSSIRRLVAEGDKAKQEKKKEFGSVQAEAEKFVLTPSLRISEEESSESDAPMTLEAPVGFAAVPASEEEELAERSASLKDVFAGEPQVKPEVEPVAEADEEVAEPSELEPVLEPETSRASLEATIAALEAAVTGSEDEFEPDGSEMAPVSSWGNEVEEVVFDSRRNHTEEPAPMEPLALTPEQAVSPISIVEDAPEEIAPDLAEEEAAPEPMEDDNAPEPEVAVAAAAAAVTTGRIFRVVPDTTPENEPEVDEPLETAVPQGTAAMYHGSEAFAEEDHGDDLMEDEGELVAPDDDIDGLLADGATLDEELIRQVVAEVVKGELEGKLGETITRNVRRLVRREINRVLTHQELE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5KZW3</accession>
    <name>A0A1M5KZW3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0016</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898335.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0016"/>
    <dbReference type="EnsemblBacteria" id="SHG58245">
        <property type="protein sequence ID" value="SHG58245"/>
        <property type="gene ID" value="SAMN05444003_0016"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046247">
        <property type="entry name" value="DUF6280"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19796">
        <property type="entry name" value="DUF6280"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG58245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="107" mass="11671" checksum="289009F9111644DF" modified="2017-03-15" version="1">MRDFVDGSAFNNEQGNRSRKLFAAVVLAALDDAIADDKKYGNGPEQIARWARSRDGREVLSCAGIDPNERVVSGLMEFVGKGVRTSVALSREESERRNAAEQEAQAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L003</accession>
    <name>A0A1M5L003_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">GCV_T domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0018</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58285.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898339.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0018"/>
    <dbReference type="EnsemblBacteria" id="SHG58285">
        <property type="protein sequence ID" value="SHG58285"/>
        <property type="gene ID" value="SAMN05444003_0018"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.120">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006222">
        <property type="entry name" value="GCV_T_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027266">
        <property type="entry name" value="TrmE/GcvT_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045179">
        <property type="entry name" value="YgfZ/GcvT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017703">
        <property type="entry name" value="YgfZ/GcvT_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22602">
        <property type="entry name" value="PTHR22602"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01571">
        <property type="entry name" value="GCV_T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03317">
        <property type="entry name" value="ygfZ_signature"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0809">Transit peptide</keyword>
    <feature type="domain" description="GCV_T" evidence="3">
        <location>
            <begin position="6"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG58285.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="243" mass="26226" checksum="AC2BB64455C30074" modified="2017-03-15" version="1">MPDRTVLSVTGSDRVSFLQGLITNNVPEDAGQIAYAALLTPQGKFIADFFVVSEDDRLLIDVAESHAATLFQRLNMYRLRADVKIEATELIVSRGLDTAPSGALTDPRSDALGWRLYGAEDLSEAVDWDAVRVSNAVPETGIELGPGTYILEAGFERLNGVDFKKGCFVGQEIVARTKHKTELRKGIVQVRIDGKASQGDDITKDGKAVGTLHTVSGDTGLAYLRFDRADGVLTAGEATLTRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L068</accession>
    <name>A0A1M5L068_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0021</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 3">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58355.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0021"/>
    <dbReference type="EnsemblBacteria" id="SHG58355">
        <property type="protein sequence ID" value="SHG58355"/>
        <property type="gene ID" value="SAMN05444003_0021"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000192">
        <property type="entry name" value="Aminotrans_V_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024169">
        <property type="entry name" value="SP_NH2Trfase/AEP_transaminase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00266">
        <property type="entry name" value="Aminotran_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000524">
        <property type="entry name" value="SPT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="5" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aminotran_5" evidence="4">
        <location>
            <begin position="10"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="3">
        <location>
            <position position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000524-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG58355.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="417" mass="44812" checksum="38431B336583330A" modified="2017-03-15" version="1">MPLANGRQYLAIPGPSVMPDEVLKAMHRASPNIYKGELHDLTHSLIPDLKYVAQTEAHVAIYIGNGHSAWEASLMNVTSRGDTVLVAEAGSFGKGWAEMADAMGLTAEILSFSEDGPVDPQGIEDALRKDTKGKIKAVLVCHVDTSTGGKSDIAAIRAAMDAAGHDALLMVDCIASLGCDRYEMDAWGIDVTVSACQKGLMTPAGLAFVHFNDKAMARRGDNVSRYWDWSLRVDPEVYFMHFNGTAPTHHLYGLRVALDMIKEEGIKNVWARHEGLAQMIWAALETWAQDGPMKINVPDRTARSWAVTSVFAGPGNGLALQDWCETQTGLTLGIGLGREPSDAYYRIGHMGHVNAHMIMGVLGTIGGGLTALGIPHGQGALQAAADELARHTPVKRSDQLIQAKGNHSNPEPASQCC</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L1M6</accession>
    <name>A0A1M5L1M6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Lactoylglutathione lyase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0046</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58901.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900323.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0046"/>
    <dbReference type="EnsemblBacteria" id="SHG58901">
        <property type="protein sequence ID" value="SHG58901"/>
        <property type="gene ID" value="SAMN05444003_0046"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004360">
        <property type="entry name" value="Glyas_Fos-R_dOase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00903">
        <property type="entry name" value="Glyoxalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="4"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG58901.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="142" mass="16029" checksum="EC8812C6CDE39E8B" modified="2017-03-15" version="1">MSLKYLHTMVRVKDLDASIKFFELLGMKETRRYDNEGGRFSLIFLAAPGDEDCPVELTYNWDGDEGLPSDSRHFGHLAYATDDIYALCQHLMDNGVTINRPPHDGHMAFVRSPDNISVELIQTGDAKEPAEPWTSMGNTGHW</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L554</accession>
    <name>A0A1M5L554_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">RarD protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0097</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59909.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898447.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0097"/>
    <dbReference type="EnsemblBacteria" id="SHG59909">
        <property type="protein sequence ID" value="SHG59909"/>
        <property type="gene ID" value="SAMN05444003_0097"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="41"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="71"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="98"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="126"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="151"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="180"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="214"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="244"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="269"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="8"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="149"/>
            <end position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG59909.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="302" mass="32798" checksum="347F1AD47BAB3275" modified="2017-03-15" version="1">MQTDRPFLGILLMLGFCVLAPLGDSVAKLLGGQVGLGKLLLTRFLIQAVILIPIVLWAGRRLWPPQGTFGLVLARTVLHIIGIGLMFSSLRFLPLADALAIAFVMPFIMLLLGKLFLNEEVGPHRLIACAVGFVGTLLVIQPNFAEVGWPALLPLGVAVTFAFFMLVTRKIAKELDPIDLQAISGLQATVILLPLFWVFADQPEVTKLTVSTEVWWLLLALGLLGTVAHLMMTWSLRFAPASTLAPMQYLEIPFGTIIGWMVFKDLPNGLAALGILITIGAGLYVILRERRLSQPSTGPAEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L572</accession>
    <name>A0A1M5L572_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0110</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60167.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898464.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0110"/>
    <dbReference type="EnsemblBacteria" id="SHG60167">
        <property type="protein sequence ID" value="SHG60167"/>
        <property type="gene ID" value="SAMN05444003_0110"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="316"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="174"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="276"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="640"/>
            <end position="672"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="646"/>
            <end position="672"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG60167.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="925" mass="96792" checksum="D0516907D1C73E06" modified="2017-03-15" version="1">MTPNFALSLSFEGIRLLRRVSDGWQIVGEVAPDAEDLATELSDLRANAGEAPVLAKLIIPADQIKFMTIDTAQTSYDDVRAALDGTTPYDVDQLEIDFDRTGGRTFIAAVAKETLEEAAGFAREHGFDVAAIVAEPEPFTFRNEIVFGDANGYERAAAGMAVLPAMDIEADAVAPDDERETSEDNQDAEDVVESASEAATEETAEEPDLEDVETVVSVDAETPEEEEVDEVPLFGTRRTVEPTPPSAAPAVGLATVAVENPAPKPEVLAAPAPVVEPSKPKMAPKAKRKKEKASEAAAMTVHGARAKVRVGGKPRFLGLMLTAGLLIFLFLVALWANTLSEDGIAGWFRTPDIIETPAPQPVETVVAPEVEDTEAPLETTETVEASTDIAPELREETTVEVAPQDVAAPLPAPESPAGTLPVLREAVGRVLSPAEADRIYAATGVYQRAPRMPLLPRGGDLEGFIEAKSIFDEGRLDQIAIPDREVMAPDANIATPRNPPPPGVTFARDLRGFILATPEGTVTPDGTIVFSGAPEKIPPFRPGTEIPDVVVERPLTGGNAPLVLVAGQPPKVPPLRPDGIAPLPEVAAAAAPENTNVLIDNDDLVVLAGAPLNPPPLRPSALTDLQATLEPEEPTVVELETAETAETAETAETAETAETAETAETAETAETATPGVVVNPTNAVTLAGVNLANFRPSIRPAAIAPVPTPEPAVLTNLIDTADPTLAGFRPSVRPTTLEGPPIDLLAIADPALAGFRPSLRPSSVAPAATPEATEEGINSVLAAIADAAPASPFVSVTRQAVLVSKRPDTRPRNFERAVARAVAASARAPAAPAAVASAPAVASGPVPGGVARAATIDNAIRLREINLIGVYGRPSDRRALIRLANGRYVRVEVGDSLDGGRVTAIGDTALNYVKRGRTYALQVPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L6U7</accession>
    <name>A0A1M5L6U7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">23S rRNA (Guanosine2251-2'-O)-methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0124</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60489.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0124"/>
    <dbReference type="EnsemblBacteria" id="SHG60489">
        <property type="protein sequence ID" value="SHG60489"/>
        <property type="gene ID" value="SAMN05444003_0124"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008173">
        <property type="term" value="F:RNA methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006396">
        <property type="term" value="P:RNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029028">
        <property type="entry name" value="Alpha/beta_knot_MTases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029064">
        <property type="entry name" value="L30e-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004441">
        <property type="entry name" value="rRNA_MeTrfase_TrmH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001537">
        <property type="entry name" value="SpoU_MeTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013123">
        <property type="entry name" value="SpoU_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029026">
        <property type="entry name" value="tRNA_m1G_MTases_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46429">
        <property type="entry name" value="PTHR46429"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00588">
        <property type="entry name" value="SpoU_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08032">
        <property type="entry name" value="SpoU_sub_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00967">
        <property type="entry name" value="SpoU_sub_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55315">
        <property type="entry name" value="SSF55315"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75217">
        <property type="entry name" value="SSF75217"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00186">
        <property type="entry name" value="rRNA_methyl_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="SpoU_sub_bind" evidence="4">
        <location>
            <begin position="27"/>
            <end position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG60489.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="262" mass="27958" checksum="B2A99538AFC37E0E" modified="2017-03-15" version="1">MGFVMKKPKWVVAKEQAKRAAAAETVWLFGIHAVRDALMNPKREKLRLVVTKNAADRLADAIEASGVTPEMSDPRKFAAPIDPQSVHQGAALEVKPLDWGRLDEIATGDGPMPPRIVMLDRVTDPHNVGAILRSAEVFGARAVVSMSRHATPETGALAKTASGALERQPYIRVRNLADAMTELKSVGYLVLGLDGTADQTIEEAVDGKRDRAIALVMGAEGPGLREKTLATCDHLVRIDFSGGFGSLNVSNAAAVALYASKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L9B5</accession>
    <name>A0A1M5L9B5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0177</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61702.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898544.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0177"/>
    <dbReference type="EnsemblBacteria" id="SHG61702">
        <property type="protein sequence ID" value="SHG61702"/>
        <property type="gene ID" value="SAMN05444003_0177"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018919">
        <property type="entry name" value="DUF2484"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10658">
        <property type="entry name" value="DUF2484"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="40"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG61702.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="84" mass="9370" checksum="11D2439922A60721" modified="2017-03-15" version="1">MTLSLILGCLWGMASAVVAMLPMQRQFGPGIVLLIAAPVLIVWIGYDYGWWLSIAAALAFLSMYRNPLRYLWKKATGQEVEVPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LD99</accession>
    <name>A0A1M5LD99_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Histidine kinase</fullName>
            <ecNumber evidence="4">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">SAMN05444003_0229</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.</text>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62998.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898637.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0229"/>
    <dbReference type="EnsemblBacteria" id="SHG62998">
        <property type="protein sequence ID" value="SHG62998"/>
        <property type="gene ID" value="SAMN05444003_0229"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1730.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038377">
        <property type="entry name" value="Na/Glc_symporter_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001734">
        <property type="entry name" value="Na/solute_symporter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50283">
        <property type="entry name" value="NA_SOLUT_SYMP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="8 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="45"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="70"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="117"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="160"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="192"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="244"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="277"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="383"/>
            <end position="400"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="407"/>
            <end position="433"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="439"/>
            <end position="458"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="465"/>
            <end position="484"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="496"/>
            <end position="519"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="11">
        <location>
            <begin position="677"/>
            <end position="890"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="9">
        <location>
            <begin position="640"/>
            <end position="677"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG62998.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="895" mass="96460" checksum="F93C5F25DF74E322" modified="2017-03-15" version="1">MLSFNLLVVVALAYVLLLFLVAFMAERRAAEGEDGWLRSPMIYTLSISIYCTAWTFYGAVGYAARSGFEFVTIYLGPTLVMVGWWWILRRLVRIGKTQRITSIADLISSRFGKSTQLGMIVTIMAVIATTPYIALQLQSVTLSFAVFADSDGSSWSLGDLNATAIWVAIGLAVFTIVFGTRNLDANERHHGIVIAVAVEAVVKLVALLAVGIFVVWGLAGGPSEMLAQIEASELSTWNQDGGRWITLIFLSAAAFLCLPRMFQVLVVENADERHLHVASWAFPLYLMAMSLFVLPIAVVGLDLLPESANPDLFVLTLPLSQGQNGLAIFSFLGGFSSATSMVIVSTIALATMVSNHIVVPIWLSSGGNEGAMQSGDVRRVIVISRRLSIAGILALGYLYYRLSGGGTALAAIGLVSFSGAVQVLPVMLGGIFWRGATRVGAALGLVTGLIVWGWTLFLPSIGENAVLSAAVLLEGPCGIAWLRPQALFGIEGLDPLIHGIFWSMLFNSAMFFLCSVMSFPLPLERLQGAQFVDVFAHSAQSRTWTRGTADAEDLLIMSQRILGSTQAQSVFQAAAMDQGKEGYLPDVTPDFVERLERELSGSVGAATAHAMIGQLTQGSNVSVEDLIAVADEAAQILEYSNQLEAKSAEQERTARALREANAKLTEVSEQKDAFLSQISHELRTPMTSIRSFSEILRETEIGPKDRSKYAGIIHNEAIRLTRLLDDLLDLSVLENGQVELHQQSGSLSELIERAIDASGVSKKELRIIRVNAEEDVPLHTDLDRLAQVFINLITNAAKYCDVEEPELRISVQAIGGGHVVDFVDNGAGIPRSKQAMIFEKFTRVSDQSTAGGAGLGLAICREVMSRLGGGITYLPGQGGAAFRVTLPAPQALAAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LDY0</accession>
    <name>A0A1M5LDY0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Assimilatory nitrate reductase (NADH) alpha subunit apoprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_0242</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mo-bis(molybdopterin guanine dinucleotide)</name>
            <dbReference type="ChEBI" id="CHEBI:60539"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63314.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898657.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0242"/>
    <dbReference type="EnsemblBacteria" id="SHG63314">
        <property type="protein sequence ID" value="SHG63314"/>
        <property type="gene ID" value="SAMN05444003_0242"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043546">
        <property type="term" value="F:molybdopterin cofactor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042128">
        <property type="term" value="P:nitrate assimilation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02791">
        <property type="entry name" value="MopB_CT_Nitrate-R-NapA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.1100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009010">
        <property type="entry name" value="Asp_de-COase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007419">
        <property type="entry name" value="BFD-like_2Fe2S-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041854">
        <property type="entry name" value="BFD-like_2Fe2S-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041957">
        <property type="entry name" value="CT_Nitrate-R-NapA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006657">
        <property type="entry name" value="MoPterin_dinucl-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006656">
        <property type="entry name" value="Mopterin_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006963">
        <property type="entry name" value="Mopterin_OxRdtase_4Fe-4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027467">
        <property type="entry name" value="MopterinOxRdtase_cofactor_BS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04324">
        <property type="entry name" value="Fer2_BFD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04879">
        <property type="entry name" value="Molybdop_Fe4S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00384">
        <property type="entry name" value="Molybdopterin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01568">
        <property type="entry name" value="Molydop_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00926">
        <property type="entry name" value="Molybdop_Fe4S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50692">
        <property type="entry name" value="SSF50692"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51669">
        <property type="entry name" value="4FE4S_MOW_BIS_MGD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00551">
        <property type="entry name" value="MOLYBDOPTERIN_PROK_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="6 9" id="KW-0408">Iron</keyword>
    <keyword evidence="7 9" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0500">Molybdenum</keyword>
    <keyword evidence="8" id="KW-0534">Nitrate assimilation</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S Mo/W bis-MGD-type" evidence="10">
        <location>
            <begin position="1"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="8"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="11"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="15"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="39"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG63314.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="858" mass="92432" checksum="130E61AF98FA7093" modified="2017-03-15" version="1">MTLTKTTCPYCGVGCGVLAGADGTIKGDPDHPANFGRLCSKGSALGETIDLDGRLLHPIVHGQKANWDTALDLVAQKFSDAIAEHGPDSVAFYASGQLLTEDYYVANKLMKGFIGSANIDTNSRLCMASSVAGHKRAFGTDTVPGCYEDLEEADLIVLVGSNLAWCHPVLYQRIAAAKADRPQMKIVNIDPRRTATSELCDLHLQISPDSDIALFNGLLAHLSDHRKIDVNYTEAHVNELPEAIVASRLTSLSATGLTDSELRNFFELWADTEKVVTVYSQGVNQSDCGTDKVNSILNCHLATGRIGKPGMGPFSVTGQPNAMGGREVGGLSNMLVNHLELGNPDHRAAVQEFWQSPTICTAQGLKAVELFEACASGQIKALWVMSTNPAVSLPNADGVAAAIRNVPFVVTSDIMGKTDTNDLAHVCLPATGWGEKNGTVTNSERRVSRQRAFLPTAGEAKPDWEIICNVARRMGYGSAFAFKSPADVFAEYLALDAATTHFSRDLDLSQFAGLDYETLDPAQWPRNGKRFFADGQFYHPDGKAKMIPVVQPKLTKPRFELNTGRNRDQWHTMTRTGKSPRLGSHLAEPYLEIHPQDAMAINARIGDLIRVKGEYGQSILRALITPRIAPGQLFAPMHWTRQQVGAGTVNSLTEPTTDPISGQPALKSVSVAAEVFRAKWYGFLVSSQKLSPSTPYAAIARTKTGWQAEVAGRHRPEDWETEARSLIEKTDGEAAVFEDKQRNLVRIAFSNHGKIQALFFASTKPVLLSRTESISVIGREQSALPALAGRPPSDQPDSGAIVCSCFSVGRNTLLNALDAGASTVSDLGHATNAGTNCGSCKPELAALIAKAKTPMAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LJ26</accession>
    <name>A0A1M5LJ26_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">B12-binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0314</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0314"/>
    <dbReference type="EnsemblBacteria" id="SHG64930">
        <property type="protein sequence ID" value="SHG64930"/>
        <property type="gene ID" value="SAMN05444003_0314"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031419">
        <property type="term" value="F:cobalamin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1240.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006158">
        <property type="entry name" value="Cobalamin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036724">
        <property type="entry name" value="Cobalamin-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036594">
        <property type="entry name" value="Meth_synthase_dom"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52242">
        <property type="entry name" value="SSF52242"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51332">
        <property type="entry name" value="B12_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="B12-binding" evidence="1">
        <location>
            <begin position="164"/>
            <end position="287"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG64930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="287" mass="32040" checksum="ECEEF7C6ACF8309A" modified="2017-03-15" version="1">MPNGVLANRELVKVANKPFDDRELDQEAYEQAEEHFRLVQTRLPQDAVEAVAREVVRRLAFRLPRNLSSGHMPTEEEIDLLCEALLSNDEVAGDRIILAARRDGIEPENIYLGYVAGAARRLGVMWEEDRVSFLQVTMASGKLYRIIRGLRHVLDNSLNLAGPEKRSLFALVPDETHTLGIEIATDVFRRQGWDVEMVMGEPHDAIIAMTEQHRFRSVVLVAHSERMLAALISLVLAIRITQPMAYIVVAGNIVDQVEDVSTLVGADDVIPDIETAVGRLGAIIDFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LKY3</accession>
    <name>A0A1M5LKY3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">S-adenosylmethionine:tRNA ribosyltransferase-isomerase</fullName>
            <ecNumber evidence="5">2.4.99.17</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Queuosine biosynthesis protein QueA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">queA</name>
        <name evidence="6" type="ORF">SAMN05444003_0352</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>7-aminomethyl-7-carbaguanosine(34) in tRNA + S-adenosyl-L-methionine = adenine + epoxyqueuosine(34) in tRNA + H(+) + L-methionine</text>
            <dbReference type="Rhea" id="RHEA:32155"/>
            <dbReference type="Rhea" id="RHEA-COMP:10342"/>
            <dbReference type="Rhea" id="RHEA-COMP:10346"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16708"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:82833"/>
            <dbReference type="ChEBI" id="CHEBI:82834"/>
            <dbReference type="EC" id="2.4.99.17"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="5">tRNA modification; tRNA-queuosine biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the QueA family.</text>
    </comment>
    <dbReference type="EC" id="2.4.99.17" evidence="5"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65665.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898810.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0352"/>
    <dbReference type="EnsemblBacteria" id="SHG65665">
        <property type="protein sequence ID" value="SHG65665"/>
        <property type="gene ID" value="SAMN05444003_0352"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00392"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051075">
        <property type="term" value="F:S-adenosylmethionine:tRNA ribosyltransferase-isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008616">
        <property type="term" value="P:queuosine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1780.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00113">
        <property type="entry name" value="QueA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003699">
        <property type="entry name" value="QueA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042118">
        <property type="entry name" value="QueA_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042119">
        <property type="entry name" value="QueA_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036100">
        <property type="entry name" value="QueA_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30307">
        <property type="entry name" value="PTHR30307"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02547">
        <property type="entry name" value="Queuosine_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111337">
        <property type="entry name" value="SSF111337"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00113">
        <property type="entry name" value="queA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4 5" id="KW-0671">Queuosine biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 5 6" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022785"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG65665.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="354" mass="38008" checksum="A2436E098C55C01A" modified="2017-03-15" version="1">MKLSDFDFDLPEHLIATRPANPKTSAKLLVAGPDRIEDLIVADLTKVLRAGDRLVLNDTKVIPARLSGTRTRTGEAGTTQAAIEVTLLEPQASGTWSALVKPLKKVRDGETIKFSDALSAELVSRADGQASLVFNLTGDDFDAALADVGAMPLPPYIAAKRAADEQDKTDYQTEWAKHSGAVAAPTASLHFDQPLLDTLAEMGVEFSFVTLHVGAGTFLPVKVDDIKDHKMHAELGYVSAQAADEINATKRAGGRVIPVGTTALRLIESAAKGGELHAWEGPTDIFITPGFPFQIADALMTNFHLPKSTLMMLVSALIGSDRIKDIYAHAISQNYRFFSYGDASLLMPNGSELP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LNN7</accession>
    <name>A0A1M5LNN7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ribosomal protein S18 acetylase RimI</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0365</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65963.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898831.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0365"/>
    <dbReference type="EnsemblBacteria" id="SHG65963">
        <property type="protein sequence ID" value="SHG65963"/>
        <property type="gene ID" value="SAMN05444003_0365"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032962">
        <property type="entry name" value="HPA2/HPA3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10545:SF42">
        <property type="entry name" value="PTHR10545:SF42"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2" id="KW-0689">Ribosomal protein</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="8"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG65963.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="153" mass="17481" checksum="48F43A95D8220311" modified="2017-03-15" version="1">MAEAKLPVTIRELRSEDRDAWQALWTAYLEFYESSVADVVYDTTFARLLGDDPQDYTCLVAEHDGKLVGLTHYLFHRHNWRVENVVYLQDLYAVPEARGLGVGRALIEAVYKAADAAGCPSVYWTTQDDNVTAQKLYDRIATKTNFIKYQRPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LR71</accession>
    <name>A0A1M5LR71_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Arginine:pyruvate transaminase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0404</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66853.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898890.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0404"/>
    <dbReference type="EnsemblBacteria" id="SHG66853">
        <property type="protein sequence ID" value="SHG66853"/>
        <property type="gene ID" value="SAMN05444003_0404"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="1">
        <location>
            <begin position="34"/>
            <end position="377"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG66853.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="390" mass="41685" checksum="CE7E8DC482F33BED" modified="2017-03-15" version="1">MRLSNRISGIVGGGSDGWGVFYKARRMIAEGIPVTELTIGEHDIRTDPVILEAMHKAAMGGHTGYAMVPGTDRLRDAVASRIQARTGVPTTRDNIIITPGGQSALFASHHSVCDEGDTALFIDPYYATYPGSLRGVGAKAVPIKARAERHFQPDAADIAAKANGARSLLINSPNNPTGVVYSRETLEGIAGVCKDHDLWLISDEVYDTQVWQGEHISPRSLPDMAERTLVIGSMSKSHAMTGSRCGWICGSEAAIQKLIDLATSTTYGVAGFVQDAALFALNLGEAHEEKVAAPFRRRRALTLEALAGQNAVRAVPADGAMYVMLDIRATGMSGEEFALALLDQHRIAVMPGESFGAAAAGHIRVAMTIDNTRYVEALKTLISFANEKAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LRC6</accession>
    <name>A0A1M5LRC6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0434</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67561.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898925.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0434"/>
    <dbReference type="EnsemblBacteria" id="SHG67561">
        <property type="protein sequence ID" value="SHG67561"/>
        <property type="gene ID" value="SAMN05444003_0434"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021273">
        <property type="entry name" value="DUF2852"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11014">
        <property type="entry name" value="DUF2852"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="35"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="130"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="96"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG67561.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="151" mass="17088" checksum="52B847758ACB04B8" modified="2017-03-15" version="1">MNTATQSVTETAYAPARPGVLARSEAWLDERGKGAWIAAMVLGFIFFWPIGLALLAYMIWSKRMFSKSCSARGRHNARYARTAMKSSGNTAFDAYKADTLRRLEEEQNNFEAFLERLRDAKDKAEFDQFMEERASDVTPSDEDTDDAPRAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LUQ3</accession>
    <name>A0A1M5LUQ3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0490</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG68834">
        <property type="protein sequence ID" value="SHG68834"/>
        <property type="gene ID" value="SAMN05444003_0490"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="22"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG68834.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="67" mass="7621" checksum="12802002EBB46359" modified="2017-03-15" version="1">MSAEQLTRIVTRVLTRWGMGAGMDMLSRGGKDPSEMTAEERAQAKASRQAMRNGQRGMRQARRFMKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LWB7</accession>
    <name>A0A1M5LWB7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Predicted DNA-binding protein, contains Ribbon-helix-helix (RHH) domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0507</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69210.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899031.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0507"/>
    <dbReference type="EnsemblBacteria" id="SHG69210">
        <property type="protein sequence ID" value="SHG69210"/>
        <property type="gene ID" value="SAMN05444003_0507"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3990.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027373">
        <property type="entry name" value="RHH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038268">
        <property type="entry name" value="RHH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13467">
        <property type="entry name" value="RHH_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RHH_4" evidence="1">
        <location>
            <begin position="6"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG69210.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="72" mass="7987" checksum="CEFBE412DB6CE42A" modified="2017-03-15" version="1">MSSGRPVKRSLTLQQHRTSVSLEDAFWKEFKVIAERTGKTINGLAAEIDEARGDVGLASAIRVFVLEDLQSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M3A4</accession>
    <name>A0A1M5M3A4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Amino acid/amide ABC transporter membrane protein 2, HAAT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0620</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG71794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899174.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0620"/>
    <dbReference type="EnsemblBacteria" id="SHG71794">
        <property type="protein sequence ID" value="SHG71794"/>
        <property type="gene ID" value="SAMN05444003_0620"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015658">
        <property type="term" value="F:branched-chain amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06581">
        <property type="entry name" value="TM_PBP1_LivM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043428">
        <property type="entry name" value="LivM-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30482">
        <property type="entry name" value="PTHR30482"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="7"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="30"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="56"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="87"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="118"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="167"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="200"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="269"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="320"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="352"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="378"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="418"/>
            <end position="435"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG71794.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="443" mass="47403" checksum="F03DDAE6328ECC2E" modified="2017-03-15" version="1">MTESLRTPLLFALVAVLIIGTGIFQDWNVALLLLNYGLISAIMALGVNLQWGFAGLFNVGVMGFVALGGLAAVLISMPPVTEAWAEGGARTIGGLLIGAGAIVATIFAQRKFQGRLKLWGTIAVALIGFFLFRAVFDGGVAAVEAVNPAGTGYLGGLNFGGENYKEWGFMALVAWPVGGLIAAGAAWVIGKVALGLRSDYLAIATLGIAEIIIAIMKHEDWLARGVKNVNGLPRPVPYELELQESATFVERANALGFDAVYASNLFTKLLYTGYFAVVLLILLWLAQKALNSPWGRMMRAIRDNEVAAEAMGKDVTARHLQIFVLGSAICGVAGAMMTTLDGQLTPGTYQPLRFTFLIWVMVIVGGSGNNFGAILGGFLIWWLWVQVEPMGLALMNFITAGMPEGSALKEHLLDSAAHMRLFTMGVILLLVLRFSPRGLIPER</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MHL8</accession>
    <name>A0A1M5MHL8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized conserved protein, DUF1330 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0832</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76691.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899523.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0832"/>
    <dbReference type="EnsemblBacteria" id="SHG76691">
        <property type="protein sequence ID" value="SHG76691"/>
        <property type="gene ID" value="SAMN05444003_0832"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010753">
        <property type="entry name" value="DUF1330"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07045">
        <property type="entry name" value="DUF1330"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1330" evidence="1">
        <location>
            <begin position="3"/>
            <end position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG76691.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="97" mass="10687" checksum="036ABFAA688D2177" modified="2017-03-15" version="1">MPTALWISHVSVIDPEAHGEYAKWAVAAIDEYGGDFLVRGGASVQLEGAERQRHIVVRFPSLKAAQNCYKSATYQEALSFAKGASERDLYIVEEVES</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5ML50</accession>
    <name>A0A1M5ML50_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0892</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78110.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899604.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG78110">
        <property type="protein sequence ID" value="SHG78110"/>
        <property type="gene ID" value="SAMN05444003_0892"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012386758" evidence="1">
        <location>
            <begin position="23"/>
            <end position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG78110.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="182" mass="18811" checksum="231DDB341EA35D60" modified="2017-03-15" version="1">MRPLVFCKVAIAVAGLATPLAADELEEQSAVELTAAMTGSIYGGAVAFDYSQDGCSGQAALTQTASTGASRTMTVNFGFSDIEPEAASVLMVGDDEAFQLTYKVREGVEPVSLVGKLVEAQPSDIDSWLADGATCEGNTCNINKTSPEVALIVFGPGAMNRAEGIEATITQLVEHCRAAAGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MQ91</accession>
    <name>A0A1M5MQ91_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7 9">GTPase Der</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">GTP-binding protein EngA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">der</name>
        <name evidence="12" type="ORF">SAMN05444003_0953</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7 9">GTPase that plays an essential role in the late steps of ribosome biogenesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Associates with the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 8 9">Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79406.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899700.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0953"/>
    <dbReference type="EnsemblBacteria" id="SHG79406">
        <property type="protein sequence ID" value="SHG79406"/>
        <property type="gene ID" value="SAMN05444003_0953"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042254">
        <property type="term" value="P:ribosome biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00195">
        <property type="entry name" value="GTPase_Der"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031166">
        <property type="entry name" value="G_ENGA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016484">
        <property type="entry name" value="GTP-bd_EngA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032859">
        <property type="entry name" value="KH_dom-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14714">
        <property type="entry name" value="KH_dom-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006485">
        <property type="entry name" value="GTP-binding_EngA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03594">
        <property type="entry name" value="GTPase_EngA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51712">
        <property type="entry name" value="G_ENGA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7 9" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="5 7 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0677">Repeat</keyword>
    <keyword evidence="3 7" id="KW-0690">Ribosome biogenesis</keyword>
    <feature type="domain" description="EngA-type G" evidence="11">
        <location>
            <begin position="3"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="domain" description="EngA-type G" evidence="11">
        <location>
            <begin position="198"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="173"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="446"/>
            <end position="484"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="9"/>
            <end position="16"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="56"/>
            <end position="60"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="119"/>
            <end position="122"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="204"/>
            <end position="211"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="251"/>
            <end position="255"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="316"/>
            <end position="319"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008279"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00020953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU004481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51712"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG79406.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="484" mass="53567" checksum="C38C98641661444C" modified="2017-03-15" version="1">MSFTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEARLADLRFTVIDSAGLEEATDDSLQGRMRRLTERAVEMADVCLFMIDARQGVLPADEVFADILRRKNVNVILAANKGEGHAADATILEAYSLGLGEPIRLSAEHGEGMGDLLATLRPIHGAHEERAALAAPEVDVDVSDDDPNAPRTPTHAKPLQIAVVGRPNAGKSTLINQIIGEERLLTGPEAGITRDAISVQKDWNGVPMRIFDTAGMRKKAKVQEKIEKLSVTDGLRAVKFAEVVVVLLDVEIPFEQQDLRIADLAEREGRAVVLAVNKWDVETDKQIKLKKLREDFARLLPQLRGAPLVTVSAKTGKGLERLHQAIIRAHEVWNRRVTTAQLNRWLTGMLEQHPPPAPGGRRIKMRYMTQVKTRPPAFVVMTSFPDQVPASYSRYLVNGLREDFDMPGTPIRLTLRDQGDKNPYKGRKKSQPSKLSKHLKPNRGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MTV7</accession>
    <name>A0A1M5MTV7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1022</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80800.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899762.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG80800">
        <property type="protein sequence ID" value="SHG80800"/>
        <property type="gene ID" value="SAMN05444003_1022"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="66"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="150"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="181"/>
            <end position="202"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG80800.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="255" mass="29176" checksum="D3002C27721F4213" modified="2017-03-15" version="1">MSEENQLEERLNTLFQQARDYVIHEDDLVDRRLKWVITITGFLFAAYGATWIAWPDEVKLNGPLQGAEYIALSLCIVRMTLAIFGYASARIGAISIQAAHHAIRAVTRKYNNFIMMNRTQILEQRLQVWQLIGDRLTHLPGFYSSAFTPFGIAVLWAITFQIDCILIYMILVGSFDETPLWLTMFLGVSIVAMIAAIVAPIVEATMAIKKLEYSGRASWLIHKAKLDNKHISKRRPLWISEQSFRKSLRRNTKGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MUE5</accession>
    <name>A0A1M5MUE5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">dTDP-4-amino-4,6-dideoxygalactose transaminase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1028</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the DegT/DnrJ/EryC1 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80916.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899768.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1028"/>
    <dbReference type="EnsemblBacteria" id="SHG80916">
        <property type="protein sequence ID" value="SHG80916"/>
        <property type="gene ID" value="SAMN05444003_1028"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000653">
        <property type="entry name" value="DegT/StrS_aminotransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30244">
        <property type="entry name" value="PTHR30244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01041">
        <property type="entry name" value="DegT_DnrJ_EryC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000390">
        <property type="entry name" value="PLP_StrS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="191"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="2">
        <location>
            <position position="191"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR000390-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000390-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU004508"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG80916.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="398" mass="43081" checksum="897185F72C6750DE" modified="2017-03-15" version="1">MTEVFTGSFTQQEPIPEEGIEAALAVMRGGRLHRYNVADGEIAQTALLEEEFAASVGAKYCLAVASGGYAMGAALRALGLGPGGKVLTNAFTLAPVPGAIASVGAIPVFVGVTENLTIDLDDLAAKADQADILMLSHMRGHLADMDALMAICDANGVTVIEDCAHTMGAAWNGVPSGRYGKIGCYSTQTYKHVNSGEGGFLVTDDAEVMARAIMLSGSYMLFERHRAAPPSEAFAQIKYETPNVSGRMDNLRAAILRPQLRDLAAQAARWNERYRVMEEGLTGVSGLTLTTRPDKEYFVASSFQFLLLDWADEAVNEVITRCAKRGVELKWFGGAEPAGFTSRYDSWRYVEADRMPKTDRILSAIVDMRLPLTFSLEDCALIARIIRQEVETVYQASA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MUU3</accession>
    <name>A0A1M5MUU3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Hippurate hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1038</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81130.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899777.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1038"/>
    <dbReference type="EnsemblBacteria" id="SHG81130">
        <property type="protein sequence ID" value="SHG81130"/>
        <property type="gene ID" value="SAMN05444003_1038"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017439">
        <property type="entry name" value="Amidohydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036264">
        <property type="entry name" value="Bact_exopeptidase_dim_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002933">
        <property type="entry name" value="Peptidase_M20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011650">
        <property type="entry name" value="Peptidase_M20_dimer"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11014">
        <property type="entry name" value="PTHR11014"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07687">
        <property type="entry name" value="M20_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01546">
        <property type="entry name" value="Peptidase_M20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005962">
        <property type="entry name" value="Pept_M20D_amidohydro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55031">
        <property type="entry name" value="SSF55031"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01891">
        <property type="entry name" value="amidohydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="M20_dimer" evidence="2">
        <location>
            <begin position="189"/>
            <end position="281"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG81130.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="387" mass="41885" checksum="84286882C562612D" modified="2017-03-15" version="1">MPIKNRFSEMLPEITAIRRDLHENPEILFDTHRTSQVVADQLKAFGVDEITTGIGRTGVVGVIKGKTDTKGKVIGLRADMDALPIHEQTGLEYASKTDGAMHACGHDGHTAMLLGAAKYLSETRNFDGTVVVIFQPAEEGGGGGREMCEDGMMDRWNIQEVYGMHNWPGKPVGTFAIRAGSFFAATDQFDITIEGKGGHAAKPQETVDSTLVAAHCVTALQSIASRNADPVDQIVVSVTSIESSSKAFNVIAQRVEMKGTVRTMSAEMRDLAEKRIKEICDGVCTAFGATADITYHRGYPCMVNHDEHTEYAAEAARAVSGQCEDAPLVMGGEDFAFMLEERPGAYILVGNGDTAAVHHPEYNFNDEAIPAGCSWWAEVVEQRMPAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MXA3</accession>
    <name>A0A1M5MXA3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">LysR family transcriptional regulator, glycine cleavage system transcriptional activator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1077</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81928.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899811.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG81928">
        <property type="protein sequence ID" value="SHG81928"/>
        <property type="gene ID" value="SAMN05444003_1077"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="7"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG81928.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="289" mass="31768" checksum="5D67FCEA677D2566" modified="2017-03-15" version="1">MEWSRIPSLPALRALEAAIRHESLSKAAAELNVTHAAIAQHVRALEVEFVTSLMVRSGRGVVGTADGKRLAAGLNDGFSTIADAVDNLRHQVDGRPLNITLTPAFAASWLMPRIGDFWSKYPEVSVNLSPSLGITDLRRDGFDLALRYGAGNWPGYQSELLVGSEFWVVAAKKLIGDQRFGCVADLSKFPWLMEDHMMELQQAIAREGLNLLDVDLKTMSTNSLVISGVKAGLGITAQPKSLVEGDVDRGDLIKLCELEQQGLGYYIVTQTDRHPKGLSEFVRWLRSQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MYS6</accession>
    <name>A0A1M5MYS6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cell wall hydrolase CwlJ, involved in spore germination</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1093</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82272.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900429.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1093"/>
    <dbReference type="EnsemblBacteria" id="SHG82272">
        <property type="protein sequence ID" value="SHG82272"/>
        <property type="gene ID" value="SAMN05444003_1093"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.2520">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011105">
        <property type="entry name" value="Cell_wall_hydrolase_SleB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042047">
        <property type="entry name" value="SleB_dom1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07486">
        <property type="entry name" value="Hydrolase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012138289" evidence="1">
        <location>
            <begin position="27"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="domain" description="Hydrolase_2" evidence="2">
        <location>
            <begin position="105"/>
            <end position="214"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07486"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG82272.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="223" mass="24487" checksum="4A0CFA78E565C7C8" modified="2017-03-15" version="1">MLKWGRGLLVAAVTSFVAFAPATLSANEVLESRLAALLGQESEALSAIPDRRLAALTSVPIPVERAASAPTEFDYTNDFLASLPAASGDSHWQCLAEALYFEARGESTRGIFAVGEVILNRVDSASYPDSICGVINQGTGRKYQCQFTYTCDGYAENINEPRAFQKVGKVARLLIDGMPRELTDGATHYHTKSVNPSWARRFPRTASIGYHYFYRQPTQQARN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N016</accession>
    <name>A0A1M5N016_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Heat shock protein Hsp15</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1115</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82827.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899841.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1115"/>
    <dbReference type="EnsemblBacteria" id="SHG82827">
        <property type="protein sequence ID" value="SHG82827"/>
        <property type="gene ID" value="SAMN05444003_1115"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00165">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002942">
        <property type="entry name" value="S4_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036986">
        <property type="entry name" value="S4_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01479">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00363">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0346">Stress response</keyword>
    <feature type="domain" description="S4" evidence="2">
        <location>
            <begin position="8"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="89"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="90"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG82827.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="122" mass="13805" checksum="47A671F1D9496177" modified="2017-03-15" version="1">MSDPRDTIRLDKWLWHARFFKSRSLAAGAVSSGKVRVNGTPVSKPSRSVGPDDVLTFTKEQDVRIVRILACGERRGPAPEAQALYEDISPEKVIRPKNPRFDGKGRPTKKDRRDMTSQFRDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N119</accession>
    <name>A0A1M5N119_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1131</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83254.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899856.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1131"/>
    <dbReference type="EnsemblBacteria" id="SHG83254">
        <property type="protein sequence ID" value="SHG83254"/>
        <property type="gene ID" value="SAMN05444003_1131"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046287">
        <property type="entry name" value="DUF6324"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19849">
        <property type="entry name" value="DUF6324"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG83254.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="63" mass="6714" checksum="680E063885C3FF55" modified="2017-03-15" version="1">MGINDEKDIEANIQIGPTDLGMVRIFVEGAGIEIPMDFDPSEADEIAEELKAAALAARAVKGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N2W7</accession>
    <name>A0A1M5N2W7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Flp pilus assembly protein TadG</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1161</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83936.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1161"/>
    <dbReference type="EnsemblBacteria" id="SHG83936">
        <property type="protein sequence ID" value="SHG83936"/>
        <property type="gene ID" value="SAMN05444003_1161"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028087">
        <property type="entry name" value="Tad_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13400">
        <property type="entry name" value="Tad"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50234">
        <property type="entry name" value="VWFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="32"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="domain" description="VWFA" evidence="2">
        <location>
            <begin position="152"/>
            <end position="476"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG83936.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="483" mass="52756" checksum="7406744ADAEEA6EE" modified="2017-03-15" version="1">MMKKMGEGSMNDHIQKAAKFCRRFREDESGSMTFFIMFIIVLTLIVAGMAVDFMKFESRRTIMQGAVDRAVLAAADLDQVRDPAEVVRDYVAKSQGGNCLSADPQIIPGANFRSVTANCELTMATYFLRILGMETLTAAASATAVEGVGNVEVSLVLDISGSMSESVPSLGMSKMDVLHDAGTAFVDALLQEEYEDRISVSLIPYTAHVNAGAELFDAYGIDRRHYFSNCVVVPTADFGSTSMNVGPSYSQAKHFQRYTGASYTCPVEDFEEIIPISQNADALKAAINQFEPRSTTSIFLGLKWGAALLDPSFQSVYSNLPSSMRDSAFSGRPENFGDNDNPSDTKKYIVVMTDGKNVGTRTLYDNFYQTPSMVAHWGAGKTPYDMYVEEFNGSANRYWDYYGQYEYTTNQGNTLMANICGAAKEAGIIIFAVAMGEGNDIDSTAMSNCASSPSGHYFETSGDELVAIFEAIADQITDLRLTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N722</accession>
    <name>A0A1M5N722_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1220</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85267.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899931.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1220"/>
    <dbReference type="EnsemblBacteria" id="SHG85267">
        <property type="protein sequence ID" value="SHG85267"/>
        <property type="gene ID" value="SAMN05444003_1220"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045467">
        <property type="entry name" value="DUF6497"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20107">
        <property type="entry name" value="DUF6497"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012997007" evidence="1">
        <location>
            <begin position="25"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG85267.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="133" mass="14635" checksum="ECB92DFFD5A98C72" modified="2017-03-15" version="1">MTTSRSKLSIAAMTFAAFSTPALAQSVPVPSGTEMELFDVIFEENPSVGRFRFIVPAIAPEGLALQFEDVMDDIDYLCDAVVLPALNLNGQKTDLVLISLSEQEIAFGEIDADVTQYFQSFQIIDNTCIWEAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N9M9</accession>
    <name>A0A1M5N9M9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized conserved protein YaaN involved in tellurite resistance</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1262</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the TelA family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86195.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899967.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1262"/>
    <dbReference type="EnsemblBacteria" id="SHG86195">
        <property type="protein sequence ID" value="SHG86195"/>
        <property type="gene ID" value="SAMN05444003_1262"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008863">
        <property type="entry name" value="Toxic_anion-R_TelA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38432">
        <property type="entry name" value="PTHR38432"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05816">
        <property type="entry name" value="TelA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF026508">
        <property type="entry name" value="TelA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="290"/>
            <end position="382"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR026508"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG86195.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="398" mass="43848" checksum="C63414A09FA3BCF6" modified="2017-03-15" version="1">MSETIREQAQASLAEVEKVTAVVLPEPAGDLVSLEGADTATSAEINKRMAELDMTDTQSIVSFGSNAQAELQEISQSMLQGVRNKDVGPAGDSLRNIVSTIRGFSISELDTRRKRSWWERLTGRAAPMAKFVARFEEVQGQIDMITDDLLRHEHVLLKDIESLDVLYEKTLNFYDELALYIAAGEAKIADLDANEIPAKEADVQAAPEDQGVMKAQELRDLRAARDDLERRVHDLKLTRQVTMQSLPSIRLVQENDKSLVTKINSTLVNTVPLWETQLAQAVTIQRSAEAAEAVRDANDLTNELLKANAANLRDANSVIRQEMERGVFDIEAVKEANENLIATINESLEIADEGKRKRAEAEKELQNMEHELKETLASAKARQTGTGDTIGTAAGAGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NB48</accession>
    <name>A0A1M5NB48_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1263</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86213.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899968.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1263"/>
    <dbReference type="EnsemblBacteria" id="SHG86213">
        <property type="protein sequence ID" value="SHG86213"/>
        <property type="gene ID" value="SAMN05444003_1263"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021323">
        <property type="entry name" value="DUF2927"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11150">
        <property type="entry name" value="DUF2927"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG86213.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="317" mass="34855" checksum="41A2038FFD504F98" modified="2017-03-15" version="1">MKLIDKAKKPLGTLCLVGLVGCTSPLWESEGPNARPDGVSGITEVVPPSEESIALATYYQRLQNDLLTQGLLRTDGGGVDTPFTDTILTRNFVRIALFDEYVTDGDFLKPQATLSDLRRWGKPIRMSVVFGKTVTEEQKIKDRAEVTAYAERLARLTGLDITVTDENPNFHVMFLSVDDADAFEERIKMLLPGIARSGLNALLRPPRDQQCVVAGSFEGDSSRYDRAVAVVRSEHPDMLRTACIHEELAQGLVLANDSPQARPSIFNDDEEFGRLTTHGELLLKILYDPRLETGMAPAEAAPIARMIARDITAATPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NE09</accession>
    <name>A0A1M5NE09_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Ribosomal protein L11 methyltransferase</fullName>
            <shortName evidence="2">L11 Mtase</shortName>
            <ecNumber evidence="2">2.1.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">prmA</name>
        <name evidence="3" type="ORF">SAMN05444003_1354</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Methylates ribosomal protein L11.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>L-lysyl-[protein] + 3 S-adenosyl-L-methionine = 3 H(+) + N(6),N(6),N(6)-trimethyl-L-lysyl-[protein] + 3 S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:54192"/>
            <dbReference type="Rhea" id="RHEA-COMP:9752"/>
            <dbReference type="Rhea" id="RHEA-COMP:13826"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29969"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:61961"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the methyltransferase superfamily. PrmA family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.-" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87697.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900045.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1354"/>
    <dbReference type="EnsemblBacteria" id="SHG87697">
        <property type="protein sequence ID" value="SHG87697"/>
        <property type="gene ID" value="SAMN05444003_1354"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008276">
        <property type="term" value="F:protein methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00735">
        <property type="entry name" value="Methyltr_PrmA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004498">
        <property type="entry name" value="Ribosomal_PrmA_MeTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 3" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="2" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 3" id="KW-0808">Transferase</keyword>
    <feature type="binding site" evidence="2">
        <location>
            <position position="132"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="156"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="178"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="225"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00735"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG87697.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="291" mass="30739" checksum="737231CCE53684D9" modified="2017-03-15" version="1">MPTFTALTTLEGADRANALGEALEALMPEPTGVGVFEVEDDSGIWEVGAYFTEEPDQAGLAILATMHEAKPFVVSEVPDQDWVAKVRRELAPVEAGRFFVYGSHDADKVPDGSIPLLIEAAMAFGTGHHGTTLGCLLAFDRLIEDGFVPQNTIDVGCGTAVLAMAAAHVSPNKVLASDIDPVAIDVADANAEANDLADRIVTKVAVGLDDDDLKAAAPFDLVFANILKGPLILLAPSICNATADNGYVILSGILNEQADEVADVYTRNGFNVIQRDSIVDWTTLTLCKLSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NEC6</accession>
    <name>A0A1M5NEC6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized domain 1-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1369</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87966.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900060.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG87966">
        <property type="protein sequence ID" value="SHG87966"/>
        <property type="gene ID" value="SAMN05444003_1369"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003736">
        <property type="entry name" value="PAAI_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006683">
        <property type="entry name" value="Thioestr_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03061">
        <property type="entry name" value="4HBT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00369">
        <property type="entry name" value="unchar_dom_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4HBT" evidence="1">
        <location>
            <begin position="54"/>
            <end position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG87966.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="148" mass="16106" checksum="DD427D01CC6758B7" modified="2017-03-15" version="1">MPTHNPLNPNWAARCRESFDGQGVMGTFGVEVAELDAGRVVLEMPFRDDLTQQHGFLHAGIVTTVLDSACGYAAFTLMPETAEVLTVEFKSNFLRPAAGKTFRFVGEVLKPGKTLMVCEGKAYADDKMISAMSATMMVVKGRKGINRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NEL4</accession>
    <name>A0A1M5NEL4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Holliday junction ATP-dependent DNA helicase RuvA</fullName>
            <ecNumber evidence="8">3.6.4.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">ruvA</name>
        <name evidence="11" type="ORF">SAMN05444003_1350</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>ATP + H2O = ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.12"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="8">Forms a complex with RuvB.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the RuvA family.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.12" evidence="8"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87619.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900042.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1350"/>
    <dbReference type="EnsemblBacteria" id="SHG87619">
        <property type="protein sequence ID" value="SHG87619"/>
        <property type="gene ID" value="SAMN05444003_1350"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009379">
        <property type="term" value="C:Holliday junction helicase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009378">
        <property type="term" value="F:four-way junction helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009432">
        <property type="term" value="P:SOS response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd14332">
        <property type="entry name" value="UBA_RuvA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00031">
        <property type="entry name" value="DNA_helic_RuvA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013849">
        <property type="entry name" value="DNA_helicase_Holl-junc_RuvA_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000085">
        <property type="entry name" value="RuvA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010994">
        <property type="entry name" value="RuvA_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011114">
        <property type="entry name" value="RuvA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036267">
        <property type="entry name" value="RuvA_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07499">
        <property type="entry name" value="RuvA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01330">
        <property type="entry name" value="RuvA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46929">
        <property type="entry name" value="SSF46929"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47781">
        <property type="entry name" value="SSF47781"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00084">
        <property type="entry name" value="ruvA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0227">DNA damage</keyword>
    <keyword evidence="6 8" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="8" id="KW-0234">DNA repair</keyword>
    <keyword evidence="5 8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3 8 11" id="KW-0347">Helicase</keyword>
    <keyword evidence="2 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 8" id="KW-0742">SOS response</keyword>
    <feature type="domain" description="RuvA_N" evidence="9">
        <location>
            <begin position="1"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="domain" description="RuvA_C" evidence="10">
        <location>
            <begin position="168"/>
            <end position="214"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01330"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF07499"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG87619.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="217" mass="22351" checksum="FC290CFA7629410C" modified="2017-03-15" version="1">MIGKISGRLEYRAEDHVLIDVRGVGYLVYVSNRVMASLPSNGEAVALYTDLLVREDNLQLFGFTTLVEKEWHRLLMSVQGIGAKASMAILGTIGADGVSRAIALGDWNAIAKAKGVGPKTAQRVAIELKDKAPGVMAMGGTVAQASGDEVVEVIEPVAAPTAPMANPAQAEALSALGNLGYAPGEAASAVAESVGADPDADTSTLIRASLKLLAPKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NFD0</accession>
    <name>A0A1M5NFD0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Phosphate transporter</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1383</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Membrane</location>
            <topology evidence="1 6">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the inorganic phosphate transporter (PiT) (TC 2.A.20) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88228.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900075.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1383"/>
    <dbReference type="EnsemblBacteria" id="SHG88228">
        <property type="protein sequence ID" value="SHG88228"/>
        <property type="gene ID" value="SAMN05444003_1383"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005315">
        <property type="term" value="F:inorganic phosphate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006817">
        <property type="term" value="P:phosphate ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001204">
        <property type="entry name" value="Phos_transporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11101">
        <property type="entry name" value="PTHR11101"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01384">
        <property type="entry name" value="PHO4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0592">Phosphate transport</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="36"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="63"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="140"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="172"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="197"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="231"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="265"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="303"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="350"/>
            <end position="369"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="389"/>
            <end position="406"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="412"/>
            <end position="429"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="464"/>
            <end position="489"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU363058"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG88228.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="494" mass="51866" checksum="4F2BC2CB16E25FF2" modified="2017-03-15" version="1">MSDQQGDPRHLETLDRDLARFSNLETATALVAKPTIGLGISIVFVVLAGITAMLFFGEANNTFIVVIAACLGAYMALNIGANDVANNMGPAVGANALTMGGAIAIAAIFESAGALIAGGDVVSTIAKGIIAPESMGTTPIFIWAMMSALLSAALWVNLATWVGAPVSTTHSVVGGVMGAGIAAAGFAAVNWPTMGKIAASWVISPVLGGAIAAIFLALIKSRIIYRDDKIAAARTWVPVLVGIMGGAFASYLALKGLKKIMKIDLPTAFMIGLAIGVLIWIIMIPVIRKQSEGLENRNKSLKVLFGIPLVVSAALLSFAHGANDVANAVGPLAAIVQASQSGDFLQAVSIPLWVMIIGAFGISFGLFLFGPKLIRMVGAQITKLNPMRAYCVALSAAITVIVASWLGLPVSSTHIAVGAVFGVGFFREWDAERRIKKARLAMPNRPQYSKEERRRRKLVRRSHFLTIISAWIITVPAAALLSGVIFFVISSFLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NKD2</accession>
    <name>A0A1M5NKD2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1465</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89907.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900147.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG89907">
        <property type="protein sequence ID" value="SHG89907"/>
        <property type="gene ID" value="SAMN05444003_1465"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG89907.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="95" mass="10005" checksum="42761E66D06EC6EE" modified="2017-03-15" version="1">MRYLAFTIGAPILVACAPISPERAADQCEERARAAQGPEVEIGIGVNSNSGGFVNGSIGVSSDFIRGTDPVALYESCVFNLTGELPIRPPVLRDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NQD2</accession>
    <name>A0A1M5NQD2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Adenosylmethionine-8-amino-7-oxononanoate aminotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1543</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91720.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900212.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1543"/>
    <dbReference type="EnsemblBacteria" id="SHG91720">
        <property type="protein sequence ID" value="SHG91720"/>
        <property type="gene ID" value="SAMN05444003_1543"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00610">
        <property type="entry name" value="OAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005814">
        <property type="entry name" value="Aminotrans_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00202">
        <property type="entry name" value="Aminotran_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000521">
        <property type="entry name" value="Transaminase_4ab_Lys_Orn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00600">
        <property type="entry name" value="AA_TRANSFER_CLASS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="1 2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG91720.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="459" mass="50271" checksum="5DF49561FA9EA06A" modified="2017-03-15" version="1">MKPHRTHNQDLSDVLTADRTHHLHPWHDLSAWREADPHCFTSGEGIYVYDQDGQKLIDGPAGMWAVQIGYGRREMADAIASQVMELPYASPWTSTTAPAAQLSERIAELAPGDLNTVMFTTGGSTAVDTALRTMQFLNNRLGRPGKKIIIAREKGYHGSTYLAASVTGKERDKSCFDFEDRLVRFLPDINPYIRPDVMTEAEWCDAKVADLENMIAEIGPDRIGAFIAEPILCSGGVIIPPKGYHQRTLEVCRAHDILYISDEVVTGFGRLGHWFASQEVFGIEPDIITCAKGITSGYLPLGACIISDRVMDRMTGADHDVLFPNGYTYSAHPVCCAAALKNIEIIEREGLLGHVQTVAPHFQARLKALEASPVIGDARGMGLLGCLEGLLDAGRDTPLEVQRTLGARLDAACEARGLIVRPLINMCVFSPPLTISPDEIDAMFDIIEDALTEVEPDFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NQH7</accession>
    <name>A0A1M5NQH7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Two-component system, OmpR family, response regulator TctD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_1548</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91844.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900217.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1548"/>
    <dbReference type="EnsemblBacteria" id="SHG91844">
        <property type="protein sequence ID" value="SHG91844"/>
        <property type="gene ID" value="SAMN05444003_1548"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="2"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="5">
        <location>
            <begin position="124"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="3">
        <location>
            <begin position="124"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG91844.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="222" mass="24557" checksum="AEFE69B7A0801D61" modified="2017-03-15" version="1">MKFLLVEDNSDLAGAIASRLRLDGHVVDNAETLEDAKAFVSTGEYDMILLDIMLPDGDGRTFLKEHRASDLDTPVIVLTARSQVSDRIGSLDLGADDYLTKPFDHAELEARCRAVLRRKSGNARVTIETGGVVFDSVAGSLKVAGEPINLRNRELRLLELFLNAPGQVFSKQKLADRLFSYDDDVSENAIEVYVGRLRKHLEKSDLGITTLRGLGYRLDHAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NR87</accession>
    <name>A0A1M5NR87_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 4">N5-carboxyaminoimidazole ribonucleotide mutase</fullName>
            <shortName evidence="3 4">N5-CAIR mutase</shortName>
            <ecNumber evidence="3 4">5.4.99.18</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">5-(carboxyamino)imidazole ribonucleotide mutase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">purE</name>
        <name evidence="7" type="ORF">SAMN05444003_1556</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 4">Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 4">
            <text>5-carboxyamino-1-(5-phospho-D-ribosyl)imidazole + H(+) = 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate</text>
            <dbReference type="Rhea" id="RHEA:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:58730"/>
            <dbReference type="ChEBI" id="CHEBI:77657"/>
            <dbReference type="EC" id="5.4.99.18"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 4">Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate from 5-amino-1-(5-phospho-D-ribosyl)imidazole (N5-CAIR route): step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the AIR carboxylase family. Class I subfamily.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.18" evidence="3 4"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG92062.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900225.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1556"/>
    <dbReference type="EnsemblBacteria" id="SHG92062">
        <property type="protein sequence ID" value="SHG92062"/>
        <property type="gene ID" value="SAMN05444003_1556"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00943"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034023">
        <property type="term" value="F:5-(carboxyamino)imidazole ribonucleotide mutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01929">
        <property type="entry name" value="PurE_classI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033747">
        <property type="entry name" value="PurE_ClassI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000031">
        <property type="entry name" value="PurE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024694">
        <property type="entry name" value="PurE_prokaryotes"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00731">
        <property type="entry name" value="AIRC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001338">
        <property type="entry name" value="AIR_carboxylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01001">
        <property type="entry name" value="AIRC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01162">
        <property type="entry name" value="purE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="1 3 4" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AIRC" evidence="6">
        <location>
            <begin position="4"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3 5">
        <location>
            <position position="12"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3 5">
        <location>
            <position position="15"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3 5">
        <location>
            <position position="42"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR001338"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR001338-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM01001"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG92062.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="162" mass="16809" checksum="CC55FA4217165A3F" modified="2017-03-15" version="1">MTAATVGIIMGSQSDWPTMKEAADLLDELGVTYEAKIVSAHRTPDRLWDYGKTAVNRGLQVIIAGAGGAAHLPGMMASKTRVPVIGVPVQTKALSGVDSLYSILQMPRGYPVATMAIGAAGAKNAGLLAAGILALQDPALAQRLDAWRDALSASIPDEPTDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NSC7</accession>
    <name>A0A1M5NSC7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1568</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG92355.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900237.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG92355">
        <property type="protein sequence ID" value="SHG92355"/>
        <property type="gene ID" value="SAMN05444003_1568"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018679">
        <property type="entry name" value="DUF2161"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09929">
        <property type="entry name" value="DUF2161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG92355.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="220" mass="24254" checksum="7156645798F3D249" modified="2017-03-15" version="1">MTREADLYPPIKAYLTRQGYEVKGEVGAVDVMAVRGDEDPVVVELKKGFSLALFHQGIDRLAMTDLVYVAVPKGASKAADRALKDNVKLARRVGLGVMTVRLRDGHVEVHADPEPYRPRKSKKKQSKLLRAFARLEGDPNAGGATRHGIVTGYRQDALKCARFLAVHGPSKGSVVKEWTEVPEATRIMAGNPYGWFERVDRGIYGLTAKGRKGLEDWADV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NT20</accession>
    <name>A0A1M5NT20_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Ribose-phosphate pyrophosphokinase</fullName>
            <shortName evidence="6">RPPK</shortName>
            <ecNumber evidence="6">2.7.6.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">5-phospho-D-ribosyl alpha-1-diphosphate</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Phosphoribosyl diphosphate synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Phosphoribosyl pyrophosphate synthase</fullName>
            <shortName evidence="6">P-Rib-PP synthase</shortName>
            <shortName evidence="6">PRPP synthase</shortName>
            <shortName evidence="6">PRPPase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">prs</name>
        <name evidence="8" type="ORF">SAMN05444003_1579</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>ATP + D-ribose 5-phosphate = 5-phospho-alpha-D-ribose 1-diphosphate + AMP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:15609"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="ChEBI" id="CHEBI:78346"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.7.6.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="6">Binds 2 Mg(2+) ions per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="6">Metabolic intermediate biosynthesis; 5-phospho-alpha-D-ribose 1-diphosphate biosynthesis; 5-phospho-alpha-D-ribose 1-diphosphate from D-ribose 5-phosphate (route I): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homohexamer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.7.6.1" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG92650.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900247.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1579"/>
    <dbReference type="EnsemblBacteria" id="SHG92650">
        <property type="protein sequence ID" value="SHG92650"/>
        <property type="gene ID" value="SAMN05444003_1579"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00087">
        <property type="reaction ID" value="UER00172"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004749">
        <property type="term" value="F:ribose phosphate diphosphokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006015">
        <property type="term" value="P:5-phosphoribose 1-diphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009165">
        <property type="term" value="P:nucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009156">
        <property type="term" value="P:ribonucleoside monophosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00583_B">
        <property type="entry name" value="RibP_PPkinase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000842">
        <property type="entry name" value="PRib_PP_synth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029099">
        <property type="entry name" value="Pribosyltran_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005946">
        <property type="entry name" value="Rib-P_diPkinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037515">
        <property type="entry name" value="Rib-P_diPkinase_bac"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10210">
        <property type="entry name" value="PTHR10210"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14572">
        <property type="entry name" value="Pribosyl_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13793">
        <property type="entry name" value="Pribosyltran_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01251">
        <property type="entry name" value="ribP_PPkin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00114">
        <property type="entry name" value="PRPP_SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 6 8" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 6" id="KW-0545">Nucleotide biosynthesis</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pribosyltran_N" evidence="7">
        <location>
            <begin position="8"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="region of interest" description="Ribose-5-phosphate binding" evidence="6">
        <location>
            <begin position="234"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="204"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="46"/>
            <end position="48"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="105"/>
            <end position="106"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="139"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="181"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="206"/>
        </location>
        <ligand>
            <name>D-ribose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:78346"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="230"/>
        </location>
        <ligand>
            <name>D-ribose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:78346"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00583"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF13793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG92650.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="338" mass="37115" checksum="98E8DA8FB36777A1" modified="2017-03-15" version="1">MPNLIEPKLISGNANRPLAETVARRMSMHRGMEVGLVDARVERFNDGEIFVEVFENVRGEDMFILQPTSNPANDNLMELLVIADALRRSSAARITAVIPYFGYARQDRRSKARTPITAKLVSNMIVEAGIERVLTLDLHATQIQGFFDIPVDNLYAAPIFALDVMHHFKGNMDDVMVVSPDVGGVARARDLAQRIGAPLSIVDKRRGKPGEVAEMTVIGDVKDRRCLIVDDIVDTAGTLCKAADVLMENGAKEVHSYITHGVLSGPAVERISKSSMKNLVITDTIQPTEAVKACKNIRIVRTAPMFAQAILNTWNGTSVSSLFDHKALKPIYEGTYSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NTD8</accession>
    <name>A0A1M5NTD8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">ATP synthase gamma chain</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">ATP synthase F1 sector gamma subunit</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">F-ATPase gamma subunit</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">atpG</name>
        <name evidence="10" type="ORF">SAMN05444003_1584</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 9">Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) has three main subunits: a, b and c.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell membrane</location>
            <topology evidence="9">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the ATPase gamma chain family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG92770.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900252.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1584"/>
    <dbReference type="EnsemblBacteria" id="SHG92770">
        <property type="protein sequence ID" value="SHG92770"/>
        <property type="gene ID" value="SAMN05444003_1584"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045261">
        <property type="term" value="C:proton-transporting ATP synthase complex, catalytic core F(1)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042777">
        <property type="term" value="P:proton motive force-driven plasma membrane ATP synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd12151">
        <property type="entry name" value="F1-ATPase_gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00815">
        <property type="entry name" value="ATP_synth_gamma_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035968">
        <property type="entry name" value="ATP_synth_F1_ATPase_gsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000131">
        <property type="entry name" value="ATP_synth_F1_gsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023632">
        <property type="entry name" value="ATP_synth_F1_gsu_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11693">
        <property type="entry name" value="PTHR11693"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00231">
        <property type="entry name" value="ATP-synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00126">
        <property type="entry name" value="ATPASEGAMMA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52943">
        <property type="entry name" value="SSF52943"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01146">
        <property type="entry name" value="ATPsyn_F1gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00153">
        <property type="entry name" value="ATPASE_GAMMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 9" id="KW-0139">CF(1)</keyword>
    <keyword evidence="4 9" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="5 9" id="KW-0406">Ion transport</keyword>
    <keyword evidence="6 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 9" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007681"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG92770.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="292" mass="31137" checksum="349F0B8456C4A24C" modified="2017-03-15" version="1">MPSLKDLKNRIESVKSTRKITKAMQMVAAAKLRRAQDAAEASRPYSERFNAVMAGLAASVGGSDSAPKLIAGTGSDHTQLLIVMTAERGLCGGFNGNIAKLAKAKAQELIDAGKSVKIITVGKKGRDAIKRELGDHFIGHVDLTEVKRVGYADAQGIAKDVLARFDAGEFDVATIFYSKFVNVVSQIPTAQQIIPASFEDVEPADHGGAIYDYEPSEEAILADLLPRGVATAIFSALLENGASEQGARMSAMDNATRNAGEMIDKLTIEFNRSRQAVITNELIEIISGAEAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NU16</accession>
    <name>A0A1M5NU16_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1595</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the UPF0283 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93051.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900261.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1595"/>
    <dbReference type="EnsemblBacteria" id="SHG93051">
        <property type="protein sequence ID" value="SHG93051"/>
        <property type="gene ID" value="SAMN05444003_1595"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021147">
        <property type="entry name" value="DUF697"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006507">
        <property type="entry name" value="UPF0283"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39342">
        <property type="entry name" value="PTHR39342"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05128">
        <property type="entry name" value="DUF697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01620">
        <property type="entry name" value="hyp_HI0043"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="54"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="84"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008255"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG93051.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="330" mass="35248" checksum="E6750115E6BCEF46" modified="2017-03-15" version="1">MTRGPILIDLDEDAPAVAPQDAPAVPELADAPETAAMQHVAALAARRPSRLARWFWGLLITIVGFVVSLAAWDYVNGLIARSPTLGYAITILLALFCGVLLIIALRELAAFSRLRRVDSIQHRAEAALAAEDLKEARAVNDQLLRLYRGRPDVAWGRDRLAEQSADVLDADGLLALSERSLLEPLDARAQREVEAAARQVATVTAIVPLALADLIAALTANLRMIRRIAEIYGGRSGFFGSWRLTRTVLTHLVATGAVAVGDDLIGSVAGGGVLSKVSRRFGEGVINGALTARVGVAAMEVCRPLPFNAVERPSVTGLVKRSLTGLFQSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NXF0</accession>
    <name>A0A1M5NXF0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Capsular polysaccharide transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1644</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG94201.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900305.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1644"/>
    <dbReference type="EnsemblBacteria" id="SHG94201">
        <property type="protein sequence ID" value="SHG94201"/>
        <property type="gene ID" value="SAMN05444003_1644"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="161"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="497"/>
            <end position="517"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="109"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="27"/>
            <end position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG94201.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="523" mass="57677" checksum="A8803EDDBD5258EF" modified="2017-03-15" version="1">MTTKPKAKKFRIRRTKTGAAQKPVEQEAASVTEQAQPAEKTTVDIQKEIDAIRREGITGRQLRVARRLAQKKGMAVTSDFDAVRQLREAGLDPFEREALLELVQPDGTTASQKAPSQQLPQTVPAAGQNLPSTQTLSPSERRNVEITTIQKQIAARRRKKLALLFTRLACFVLLPTALVGWYFFTVATPMYSTKSEFVIQTADSGAGAGGLGGLFQGTSIANQQDSITVQSYLTSRAAMLRLDEEHGFKQHFSQDRIDAIQRLPADASNEQAFSVYADKVKIGYDPTEGILKMEVIAADPETSQLFSEALIGYAEEQVDQLTQRLREDQMSGASASYEAAEARRAEALSEWLAIQQEFEIIDPGAETAALLGQISTLEADRQRLQLTLQERLNVARPNEAQVSAIRGQIANIEGLIADIRAQMTNANNSESSLASRNTELRLAEENYTFQTMLVQQALTQMETAQIEANRQVRYLSLGVEPVAPDEATYPKAFQNTLLAFLIFSGVYLMISLTASILREQVSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PLL7</accession>
    <name>A0A1M5PLL7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9 10">tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase</fullName>
            <ecNumber evidence="9 10">2.8.4.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">tRNA-i(6)A37 methylthiotransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">miaB</name>
        <name evidence="14" type="ORF">SAMN05444003_1703</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 10">Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>[sulfur carrier]-SH + AH2 + N(6)-dimethylallyladenosine(37) in tRNA + 2 S-adenosyl-L-methionine = 2-methylsulfanyl-N(6)-dimethylallyladenosine(37) in tRNA + 5'-deoxyadenosine + [sulfur carrier]-H + A + 2 H(+) + L-methionine + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:37067"/>
            <dbReference type="Rhea" id="RHEA-COMP:10375"/>
            <dbReference type="Rhea" id="RHEA-COMP:10376"/>
            <dbReference type="Rhea" id="RHEA-COMP:14737"/>
            <dbReference type="Rhea" id="RHEA-COMP:14739"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:29917"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:64428"/>
            <dbReference type="ChEBI" id="CHEBI:74415"/>
            <dbReference type="ChEBI" id="CHEBI:74417"/>
            <dbReference type="EC" id="2.8.4.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="10">Binds 2 [4Fe-4S] clusters. One cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the methylthiotransferase family. MiaB subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.8.4.3" evidence="9 10"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02419.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900519.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1703"/>
    <dbReference type="EnsemblBacteria" id="SHH02419">
        <property type="protein sequence ID" value="SHH02419"/>
        <property type="gene ID" value="SAMN05444003_1703"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035596">
        <property type="term" value="F:methylthiotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006400">
        <property type="term" value="P:tRNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01864">
        <property type="entry name" value="tRNA_metthiotr_MiaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005839">
        <property type="entry name" value="Methylthiotransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020612">
        <property type="entry name" value="Methylthiotransferase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013848">
        <property type="entry name" value="Methylthiotransferase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038135">
        <property type="entry name" value="Methylthiotransferase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006463">
        <property type="entry name" value="MiaB_methiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002792">
        <property type="entry name" value="TRAM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01938">
        <property type="entry name" value="TRAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00919">
        <property type="entry name" value="UPF0004"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00273">
        <property type="entry name" value="(dimethylallyl)adenosine_tRNA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00089">
        <property type="entry name" value="TIGR00089"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51449">
        <property type="entry name" value="MTTASE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01278">
        <property type="entry name" value="MTTASE_RADICAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50926">
        <property type="entry name" value="TRAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 10" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 10" id="KW-0408">Iron</keyword>
    <keyword evidence="8 10" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="6 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 10" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 10 14" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 10" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="MTTase N-terminal" evidence="12">
        <location>
            <begin position="5"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="Radical SAM core" evidence="13">
        <location>
            <begin position="145"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="domain" description="TRAM" evidence="11">
        <location>
            <begin position="374"/>
            <end position="435"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="14"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="50"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="84"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="159"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="163"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="166"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00033765"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01864"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51449"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="SHH02419.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="435" mass="47980" checksum="A6AC12C0AD8DBC2E" modified="2017-03-15" version="1">MSADKKLFIKTYGCQMNVYDSERMAEALGGKGYVQTDTPDDADMILLNTCHIREKAAEKVYSELGRFKGLKAANPDLKIGVAGCVAQAEGEEIIRRQPMVDLVVGPQSYHRLPAMDDTVRRGAKALDTDFPEDDKFDMLKKRKRASRAPTAFLTVQEGCDKFCAFCVVPYTRGAEVSRPSARVISEAHELVESGVKEITLLGQNVNAYHGHEGGLAGLIWELDKIDGLERIRFTTSHPNDMDDALIDAHGSCDKLMPYLHLPVQSGSDRILKAMNRKHTAESYIKLIERIRAARPDLLLSGDFIVGFPGETDEDFEDTMSLIREVNYGQAYSFKYSTRPGTPAAEKPQLPDDVAADRLQRLQALLKSQQIANQDAMVGGRVKVLFEKEGREAGQLIGKSEYLHAVYAEAPKEALGQVVEAKVVESSPNSLAGVCL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PMH0</accession>
    <name>A0A1M5PMH0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="13 14 15">UvrABC system protein B</fullName>
            <shortName evidence="14">Protein UvrB</shortName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="14">Excinuclease ABC subunit B</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="primary">uvrB</name>
        <name evidence="20" type="ORF">SAMN05444003_1730</name>
    </gene>
    <organism evidence="20 21">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="20 21" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20 21">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11 14">The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage.</text>
    </comment>
    <comment type="subunit">
        <text evidence="12 14 15">Forms a heterotetramer with UvrA during the search for lesions. Interacts with UvrC in an incision complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 14 15">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="14">The beta-hairpin motif is involved in DNA binding.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 14 15">Belongs to the UvrB family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02921.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900541.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1730"/>
    <dbReference type="EnsemblBacteria" id="SHH02921">
        <property type="protein sequence ID" value="SHH02921"/>
        <property type="gene ID" value="SAMN05444003_1730"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009380">
        <property type="term" value="C:excinuclease repair complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009381">
        <property type="term" value="F:excinuclease ABC activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006289">
        <property type="term" value="P:nucleotide-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009432">
        <property type="term" value="P:SOS response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00204">
        <property type="entry name" value="UvrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006935">
        <property type="entry name" value="Helicase/UvrB_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001943">
        <property type="entry name" value="UVR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036876">
        <property type="entry name" value="UVR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004807">
        <property type="entry name" value="UvrB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041471">
        <property type="entry name" value="UvrB_inter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024759">
        <property type="entry name" value="UvrB_YAD/RRR_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24029">
        <property type="entry name" value="PTHR24029"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04851">
        <property type="entry name" value="ResIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02151">
        <property type="entry name" value="UVR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12344">
        <property type="entry name" value="UvrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17757">
        <property type="entry name" value="UvrB_inter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46600">
        <property type="entry name" value="SSF46600"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00631">
        <property type="entry name" value="uvrb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50151">
        <property type="entry name" value="UVR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 14" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 14" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 14 15" id="KW-0227">DNA damage</keyword>
    <keyword evidence="6 14 15" id="KW-0228">DNA excision</keyword>
    <keyword evidence="9 14 15" id="KW-0234">DNA repair</keyword>
    <keyword evidence="8 14 15" id="KW-0267">Excision nuclease</keyword>
    <keyword evidence="4 14" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="21" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10 14 15" id="KW-0742">SOS response</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="18">
        <location>
            <begin position="57"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="19">
        <location>
            <begin position="462"/>
            <end position="628"/>
        </location>
    </feature>
    <feature type="domain" description="UVR" evidence="17">
        <location>
            <begin position="653"/>
            <end position="688"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="16">
        <location>
            <begin position="709"/>
            <end position="735"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Beta-hairpin" evidence="14">
        <location>
            <begin position="123"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <begin position="70"/>
            <end position="77"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00025647"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00026033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00029504"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="RuleBase" id="RU003587"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="PROSITE" id="PS50151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="19">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="EMBL" id="SHH02921.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="735" mass="83078" checksum="60358833F262AB6C" modified="2017-03-15" version="1">MAYAHSDKREIEDAAYLSNPAPNVREREKMEGGIQFKMVTEFEPAGDQPTAITELADGVRDGERDQVLLGATGTGKTFTMAKVIEETQRPAIILAPNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVARSDTYIEKESQINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDIHAGKMYDQRKIMADLIAQQYRRNDQAFQRGTFRVRGDSLEIWPAHLDDRAWKLSFFGEELENITEFDPLTGEKTDTFDKVRVYANSHYVTPKPTMQQAIIGIKKELKIRLDQLVNDGKLLEAQRLEQRTNFDLEMLEATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDHAIVFADESHVSVPQIGGMYKGDYRRKFTLAEHGFRLPSCMDNRPLKFEEWDAMRSQSVYVSATPAAWELEQAGGVFTEQIIRPTGLLDPEVEIRPVDMQVDDLLDEVRKVAADGYRSLVTTLTKRMAEDLTEYMHEQGIRVRYMHSDIDTIERIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLVQTIGRAARNADGRVIMYADRVTGSMERALKETERRRAKQIAYNEANGITPETVKKNVEDILAGLYNGDTDQARVTTKVEKPGQNMQAVLDGLRADMRKAAENLEFEEAARLRDEVKRLEAVELAVADDPLARQYAIDKAVEDAQSKSGRSTMGRGGMRGGVKRKKKWN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PUK2</accession>
    <name>A0A1M5PUK2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Peptidase M50B-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1847</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05276.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900641.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH05276">
        <property type="protein sequence ID" value="SHH05276"/>
        <property type="gene ID" value="SAMN05444003_1847"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="73"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="102"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="125"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="149"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="187"/>
            <end position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH05276.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="225" mass="24411" checksum="5BAD8BC1AE46A72D" modified="2017-03-15" version="1">MQKAKDHWQLGLLLVLVFALWSTPVSIPLKIFVVFLHELSHVIATVLTGGEVLSLSVSADQGGVVWSRGGNRFITLSAGYLGSLLIGLALLLGALKTKIDKILMMGCGVVLLLVAALYVRDSFALLFTCVTGIAMIAVGYFLSYDINDLILRLLGLSSMIYVPFDILSDTILRSGARSDARMLAEEFGGATVMWGGIWLCLSLLAIFYALKIALKEPSNLTWSRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PV99</accession>
    <name>A0A1M5PV99_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1 2">Molybdenum cofactor biosynthesis protein B</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1864</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">May be involved in the biosynthesis of molybdopterin.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Cofactor biosynthesis; molybdopterin biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the MoaB/Mog family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05612.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900655.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1864"/>
    <dbReference type="EnsemblBacteria" id="SHH05612">
        <property type="protein sequence ID" value="SHH05612"/>
        <property type="gene ID" value="SAMN05444003_1864"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00344"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00886">
        <property type="entry name" value="MogA_MoaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.980.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012245">
        <property type="entry name" value="MoaB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036425">
        <property type="entry name" value="MoaB/Mog-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001453">
        <property type="entry name" value="MoaB/Mog_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013484">
        <property type="entry name" value="MoaB_proteobac"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43232">
        <property type="entry name" value="PTHR43232"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00994">
        <property type="entry name" value="MoCF_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006443">
        <property type="entry name" value="MoaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00852">
        <property type="entry name" value="MoCF_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53218">
        <property type="entry name" value="SSF53218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02667">
        <property type="entry name" value="moaB_proteo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00177">
        <property type="entry name" value="molyb_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0501">Molybdenum cofactor biosynthesis</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MoCF_biosynth" evidence="3">
        <location>
            <begin position="16"/>
            <end position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00015262"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR006443"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH05612.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="180" mass="19653" checksum="C27210605B94E7D9" modified="2017-03-15" version="1">MSRIDDTRDFIPVRIAILTVSDTRSAADDRSGNTLADLIETAGHSIAARTILPDERAQIADQLRAWCANDAIDVVISTGGTGLTGRDVTVEAHRDVYEKEIDAFGTVFTHVSMAKIGTSAVQSRATGGVANGTYLFALPGSPGACKDAWDEILVKQLDYRHRPCNFVEIMPRLDEHLRRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PVX1</accession>
    <name>A0A1M5PVX1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glutamine amidotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1882</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05968.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900671.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1882"/>
    <dbReference type="EnsemblBacteria" id="SHH05968">
        <property type="protein sequence ID" value="SHH05968"/>
        <property type="gene ID" value="SAMN05444003_1882"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026869">
        <property type="entry name" value="EgtC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017932">
        <property type="entry name" value="GATase_2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13230">
        <property type="entry name" value="GATase_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51278">
        <property type="entry name" value="GATASE_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glutamine amidotransferase type-2" evidence="1">
        <location>
            <begin position="2"/>
            <end position="248"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH05968.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="248" mass="27691" checksum="6DAB30209B9FCA51" modified="2017-03-15" version="1">MCRIAAYSGPARPLEDIIVKPSHSLLTQSQHAEEAKLAVNGDGFGVSWYRRDDPIPGVYRDVMPAWSDSNLTSLSRMVSSHLFIAHVRASTAGATSRENCHPFVYKNWSFCHNGQVPHIDRVRRRLEAALPDELYHTRRGTTDSELIFLTLLRHGLTQNVDSAWAKTLEDFQPQQDEKPVRMTCVFSDGVSLFAMRYASDGKCPTLYTSAWDSGTLIASEPLSGDAKVWSSVPTDRVIKFGSNEFVEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PWH0</accession>
    <name>A0A1M5PWH0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RND family efflux transporter, MFP subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1863</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05593.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900654.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1863"/>
    <dbReference type="EnsemblBacteria" id="SHH05593">
        <property type="protein sequence ID" value="SHH05593"/>
        <property type="gene ID" value="SAMN05444003_1863"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="119"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH05593.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="485" mass="52004" checksum="51AC015C11112200" modified="2017-03-15" version="1">MKFLRRTLVGIFLLGITLALLAMAGNTVRGAVQARMNEEPRSFPQRERVFAVNVVTLEPQTISPEVTVFGEIESGRTVEVRSAVGGTILETAPELVEGGVVSADQLLVKIDPATAMTQLDRLEVDLQDAQAELRDAERSLTLAQDELAAAQQQGELRGQALLRAQDLLDRGVGTAAAVESAELAVAAAEATVLSRRQSLASAEARKDLANTRLSRTQISLAEAQRDLDETEIYALFDGVLADVSAANGGRLSPNERFATLLDPSELEVAFRVSTSQYAQLLNDEGRLIDALIEVELDVSGLNQTASGTIIRESAAVADGQTGRLLFAKLDDTTGLRPGDFVTVKINRPELNGVALVPSSAVGTDNTVLVVNEENRLELAETRVLHRQGDDVLIPVGALAGRDIVAERSPLVGAGIGVRPIRPGQGIEEPEPPQMVALDAERRAKLLAFVENSRMPDPVKTRLVAQLEQDEVPSDVVERIEGRMGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PXG3</accession>
    <name>A0A1M5PXG3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Molybdenum cofactor guanylyltransferase</fullName>
            <shortName evidence="4">MoCo guanylyltransferase</shortName>
            <ecNumber evidence="4">2.7.7.77</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">GTP:molybdopterin guanylyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Mo-MPT guanylyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Molybdopterin guanylyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Molybdopterin-guanine dinucleotide synthase</fullName>
            <shortName evidence="4">MGD synthase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">mobA</name>
        <name evidence="6" type="ORF">SAMN05444003_1891</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>GTP + H(+) + Mo-molybdopterin = diphosphate + Mo-molybdopterin guanine dinucleotide</text>
            <dbReference type="Rhea" id="RHEA:34243"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:71302"/>
            <dbReference type="ChEBI" id="CHEBI:71310"/>
            <dbReference type="EC" id="2.7.7.77"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="4">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="4">The N-terminal domain determines nucleotide recognition and specific binding, while the C-terminal domain determines the specific binding to the target protein.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the MobA family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.77" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06159.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900677.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1891"/>
    <dbReference type="EnsemblBacteria" id="SHH06159">
        <property type="protein sequence ID" value="SHH06159"/>
        <property type="gene ID" value="SAMN05444003_1891"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061603">
        <property type="term" value="F:molybdenum cofactor guanylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02503">
        <property type="entry name" value="MobA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00316">
        <property type="entry name" value="MobA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025877">
        <property type="entry name" value="MobA-like_NTP_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013482">
        <property type="entry name" value="Molybde_CF_guanTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12804">
        <property type="entry name" value="NTP_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02665">
        <property type="entry name" value="molyb_mobA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 4" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 4" id="KW-0501">Molybdenum cofactor biosynthesis</keyword>
    <keyword evidence="1 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="NTP_transf_3" evidence="5">
        <location>
            <begin position="6"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="9"/>
            <end position="11"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="22"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="50"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="68"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF12804"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH06159.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="193" mass="19963" checksum="71CF2DCF1ED505A2" modified="2017-03-15" version="1">MKQPVGIILAGGQATRMGGGDKGLLPLGSSTILSHVIERIEPQVAALALNANGDAVRFADFELPVRADSIDGFAGPLSGVLAGLDWAAEVGASHVVSVAADTPFFPCDLVPQLILQANDQGLALAASPSGRQPTFGLWPVALREDLRGALEGGLRKVVQWTQAHGAGTAEFPDDAAFFNVNTPDDLAQAEAML</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PZF7</accession>
    <name>A0A1M5PZF7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Type I secretion system ABC transporter, PrtD family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_1914</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06583.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900696.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1914"/>
    <dbReference type="EnsemblBacteria" id="SHH06583">
        <property type="protein sequence ID" value="SHH06583"/>
        <property type="gene ID" value="SAMN05444003_1914"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030256">
        <property type="term" value="C:type I protein secretion system complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030253">
        <property type="term" value="P:protein secretion by the type I secretion system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010128">
        <property type="entry name" value="ATPase_T1SS_PrtD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24222:SF0">
        <property type="entry name" value="PTHR24222:SF0"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01842">
        <property type="entry name" value="type_I_sec_PrtD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="23"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="58"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="25"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="334"/>
            <end position="570"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="368"/>
            <end position="375"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH06583.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="579" mass="62374" checksum="E1689C0EF61C9FEB" modified="2017-03-15" version="1">MQKQSVEAGRDELVAARRESRGLYWAVGIFSFFVNLLMLTGPLYMLNVYDRVLGSRSFETLLALTILVAFLYGMMGILDYARGRVMGRVGARFQARLDRRVFTAVLKATTLNRAPKEAATGMRDLESVQRLITSPALMAIFDAPWTPIFLLGIFIFHPMMGYLAVGGGAVLILFAILNQLSTRKPLASANATAFQSEAMSSEIRAESEMVHSLGMRKSAFDRWQIARNASLEATVGAADAAGTYTSLIKAFRLFLQSAMLGLGAYLVLQEQLTPGAMIAGSILLGRALAPIELLVGQWAVFQRAKEGWNNLAVLLSAIPEDEARTELPKPEARIKVYQLTVVPPGEQTAALRTISFDVEPGHAVGVIGTSGSGKSTLARALTGVWRPAGGKIRLDGAALDQYDPDALGQHIGYLPQRVQLFDGTIKENIARMSMNPDDAAVIEAAKKADAHSMILQLPDGYDTRVATHGGRLSGGQIQRIGLARAMYGDPVILVLDEPNSNLDNAGSMALNNAIKQAKADGKVVFIMAHRPAAIQECDLLLMIENGGLRAFGPKEEVLKSTVRNLHEIANTAGVSGGVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q067</accession>
    <name>A0A1M5Q067_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1932</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06883.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900711.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1932"/>
    <dbReference type="EnsemblBacteria" id="SHH06883">
        <property type="protein sequence ID" value="SHH06883"/>
        <property type="gene ID" value="SAMN05444003_1932"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH06883.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="124" mass="13737" checksum="34C7CBABEE523E1E" modified="2017-03-15" version="1">MSKLTVQTLGMTAGKWEGLLSGVAGDEAPQISVMLYDKIITEMEPVQNGEGKEWHLSFHLDPQHISSGVQTFLFVTADGKETIGSFPVVAGEALGQDLRAEIDLLRAELDMFKRVFRQHCKETM</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q187</accession>
    <name>A0A1M5Q187_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1983</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900752.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH07895">
        <property type="protein sequence ID" value="SHH07895"/>
        <property type="gene ID" value="SAMN05444003_1983"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH07895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="182" mass="21091" checksum="7FC390BC7E8538FD" modified="2017-03-15" version="1">MRLTTEQSQVFQELGWSIRKDAIGDPMIYRVDGDQLFEVVFQYFERGKQFYFPLLYRATTVSYRQSFLEVTARKSTENAPIFGVVEFHFADTSHDVMQDISQKLIGMADKADVASEISRLSQTRPSTLEGQYEYLTALAWLGQYDRLKLELEALKLKNERENPLKCSVDVFKRIDGMDVYAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q2M7</accession>
    <name>A0A1M5Q2M7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein involved in exopolysaccharide biosynthesis</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1974</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07733.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900746.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1974"/>
    <dbReference type="EnsemblBacteria" id="SHH07733">
        <property type="protein sequence ID" value="SHH07733"/>
        <property type="gene ID" value="SAMN05444003_1974"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="411"/>
            <end position="430"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="468"/>
            <end position="489"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="156"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="314"/>
            <end position="379"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH07733.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="509" mass="57279" checksum="EB95C9403BA82F02" modified="2017-03-15" version="1">MNLDLRFYFSLFLRRLPVMLTIFLVCSVLGVATAYNAAPTYTSSARLLIEEAQIEVGVANSINPDQQLRLIRERLLTRANLIDIANELNVFEDMQDMTPDAIFTEMLANTSVQLSGGRNQVTLMRISFEARTGQIAARVVSEYLTLIQADNSSNTNAQVENTLAFFQREVDRLSADLDQQSARIVSFKAENADALPEDLDFRYGRQAQLLERIDRLEKDFADLERQRDEAIRFFETTGRLSRPGGTALSPEEQQLEQLELELRRARAVYSDTNPRVVLLQNQIDQLREIVSETQPNDVDDTFQSPENALLQLRIAEFEDRMASNVNERAEIETELTQIDSSIQATAANGIALATLERDFANLQSRYNAANNNLDRSRLALDIEASNQGQKLTIIENPNVPQDPSGPNRIRIATIGVGAGLALAAGFFVLLEITNRTIRRPEEIEAKFNVTPIASIPYMESKRQRRMRMALLAGALLVVLIGVPLILWYIDTYYLPLDVIVARITNRLGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q361</accession>
    <name>A0A1M5Q361_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Regulator of protease activity HflC, stomatin/prohibitin superfamily</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2000</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08169.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900762.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2000"/>
    <dbReference type="EnsemblBacteria" id="SHH08169">
        <property type="protein sequence ID" value="SHH08169"/>
        <property type="gene ID" value="SAMN05444003_2000"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.479.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001107">
        <property type="entry name" value="Band_7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036013">
        <property type="entry name" value="Band_7/SPFH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001972">
        <property type="entry name" value="Stomatin_HflK_HflKC_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01145">
        <property type="entry name" value="Band_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00721">
        <property type="entry name" value="STOMATIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00244">
        <property type="entry name" value="PHB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117892">
        <property type="entry name" value="SSF117892"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="domain" description="PHB" evidence="2">
        <location>
            <begin position="26"/>
            <end position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH08169.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="293" mass="32386" checksum="6AFEF6FD11AAE76C" modified="2017-03-15" version="1">MQFEELIGQNIVYLLLAVFIIICILAGVRIVPQSQKYVVERLGRLRSVLGPGINFIVPFLDRVRHKVSILERQLPTSTQDAITSDNVLVQVETSVFYRIIEPEKTVYRIRDVDGAIMTTVAGIVRSEIGRMELDQVQANRANLIEAVRNQVAQQVDDWGIEVTRAEILDVNLDDATRAAMLQQLNAERARRAQVTEAEGTKRAVELQADADLYAAEQEAKARRVAADAEAYATQVVAKAIADNGLEAAQYQVALKQVESLNRLGDGEGNQTILLPANVIEAFGDAFKMLKGSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q548</accession>
    <name>A0A1M5Q548_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="10">2-octaprenylphenol hydroxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_2047</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; ubiquinone biosynthesis [regulation].</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09092.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900805.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2047"/>
    <dbReference type="EnsemblBacteria" id="SHH09092">
        <property type="protein sequence ID" value="SHH09092"/>
        <property type="gene ID" value="SAMN05444003_2047"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00232"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006744">
        <property type="term" value="P:ubiquinone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd13972">
        <property type="entry name" value="UbiB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004147">
        <property type="entry name" value="ABC1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010232">
        <property type="entry name" value="UbiB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045308">
        <property type="entry name" value="UbiB_bact"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03109">
        <property type="entry name" value="ABC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01982">
        <property type="entry name" value="UbiB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0831">Ubiquinone biosynthesis</keyword>
    <feature type="domain" description="ABC1" evidence="9">
        <location>
            <begin position="97"/>
            <end position="342"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005020"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022688"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF03109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH09092.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="510" mass="56743" checksum="839962F4B321E962" modified="2017-03-15" version="1">MRGPHNIIRLIRTGATLERTGAMNVVLDAFDAGPLLRVTFRTIVWPFQWLGYKGDVTMPPATRALTALGPAYIKFGQVLSTRPDVVGDELAVQLRVLQDKLPPFSMKEAEREVKRELGQSVQELFSSFSEPVAAASLAQVHKAHLVESGDAVAVKILRPGIEKAFRKDIDAFYFAARAIELLSPASRRLRPMDVIEHFEGVVMGELDLRLESSAASEFASNTEKDEGFDVPNVRWHLSGRRVMTLDWAEGIGIGDNDALDAAGHDRRALAARVLQMFLNHALRDGYFHGDMHQGNLKVAQNGDIIAYDFGIMGRIDEYTRRVYAEILFGFIRKDYQRVAEVHFEAGYVPSNQDVDEFARALRAVGEPIFGMDASRISMARLLSYLFEVTERFGMETRTELILLQRTMVVVEGVARSLDPHMNIWQVSRPTVERYITESIGPKALLKDLGKTVMILSRFGPQLPAMAEAALIRANNPPPPPKPQRRKARAAWFALGAVVSAAAVLGIQQLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q5F9</accession>
    <name>A0A1M5Q5F9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">MFS transporter, BCD family, chlorophyll transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_2054</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the PucC family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09228.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900811.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2054"/>
    <dbReference type="EnsemblBacteria" id="SHH09228">
        <property type="protein sequence ID" value="SHH09228"/>
        <property type="gene ID" value="SAMN05444003_2054"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06176">
        <property type="entry name" value="MFS_BCD_PucC-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026036">
        <property type="entry name" value="PucC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004896">
        <property type="entry name" value="PucC-rel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23538">
        <property type="entry name" value="PTHR23538"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03209">
        <property type="entry name" value="PUCC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF016565">
        <property type="entry name" value="PucC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="35"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="74"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="108"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="141"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="170"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="224"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="263"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="290"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="321"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="356"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="390"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="7">
        <location>
            <begin position="5"/>
            <end position="417"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008412"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH09228.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="426" mass="44676" checksum="B7D1C95DE8E28217" modified="2017-03-15" version="1">MTLSWFQIFRLGLVQMALGAIVVLTTSTLNRLMVVELAMPAVLPGLLVALHYGIQMTRPQWGFASDTGGKRTRWIIGGMVALAVGAFMAACGILVLANSFALGMVVSIIAYALIGLGVGASGTSLLALLATTTVPHRRAAAATITWLMMIFGIAMTAGIVGSLLDPYTPALLLRIVGAVVLSAIVLTIVAVWRIEEKLIAVREPDLTPFMEGLKEVWQERKARNFTLFVFLSMTAYFMQELILEPYAGLVFNFTPGESTSLSGAQNGGVFIGMLTVGIMATGFKIGALRNWVIAGCLGSAAALGVIALIGPMGPGAPLMPATVALGFFNGMFAVAAIGSMMALAGEGREQREGTRMGLWGAAQAIAAGFGGLIGAAMVDLLRIPLSDAQAFGSVFIFEALLFIAATWMAAKIMERPAQAPVMVPGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q8X0</accession>
    <name>A0A1M5Q8X0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2107</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH10241.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH10241">
        <property type="protein sequence ID" value="SHH10241"/>
        <property type="gene ID" value="SAMN05444003_2107"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH10241.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="31" mass="3663" checksum="64F6F90B21ABD1CA" modified="2017-03-15" version="1">MKLYFDELVLNLTSTMLCALKSFFNAILLFY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QJG4</accession>
    <name>A0A1M5QJG4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Taurine transport system substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2148</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14016.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901465.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2148"/>
    <dbReference type="EnsemblBacteria" id="SHH14016">
        <property type="protein sequence ID" value="SHH14016"/>
        <property type="gene ID" value="SAMN05444003_2148"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010068">
        <property type="entry name" value="Peri-bd_TauA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015168">
        <property type="entry name" value="SsuA/THI5"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30024:SF38">
        <property type="entry name" value="PTHR30024:SF38"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09084">
        <property type="entry name" value="NMT1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012997036" evidence="1">
        <location>
            <begin position="23"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="domain" description="NMT1" evidence="2">
        <location>
            <begin position="50"/>
            <end position="243"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09084"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH14016.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="333" mass="34498" checksum="F99E4DC111D62051" modified="2017-03-15" version="1">MKKTVLSIAAGLAMTVSSSAVMADGHGEITVAYFLEWPMPFQFAKVNEMYEEALGVDINWVSFDTGTAMSAAMASGDVQISVSQGIPPFVVATSAGQDLQIIDVAVSYADNDNCVVASGLEIDKDSASELAGKKVAVPLGTAAHYGFLSQMAHFGVDLASMEIVDMAPADGAAAIAQGQVDMACGWGGALRRMTEHGNVLLTGAEKEALGILVFDATTAPASFIAENPEMVAKFAEVTAKANEMWNAGDMQAEMLPVIAKDAGMDEDATAATMATFVFPTVEDQLSEAWLGGNAASFMKGVADVFVGAGSIPSALDSYEGAISKDALMTVSSM</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QJR6</accession>
    <name>A0A1M5QJR6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, LacI family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2137</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH13803.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900941.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2137"/>
    <dbReference type="EnsemblBacteria" id="SHH13803">
        <property type="protein sequence ID" value="SHH13803"/>
        <property type="gene ID" value="SAMN05444003_2137"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01392">
        <property type="entry name" value="HTH_LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000843">
        <property type="entry name" value="HTH_LacI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001761">
        <property type="entry name" value="Peripla_BP/Lac1_sug-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00356">
        <property type="entry name" value="LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00532">
        <property type="entry name" value="Peripla_BP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00354">
        <property type="entry name" value="HTH_LACI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50932">
        <property type="entry name" value="HTH_LACI_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH lacI-type" evidence="4">
        <location>
            <begin position="9"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH13803.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="341" mass="37077" checksum="29F0DD6FE4156303" modified="2017-03-15" version="1">MTDPSKRPLTLRDVSEASGVSEMTVSRVLRNKGDVSAATREKVQEAAKRLGYVPNKIAGALASQRVNLVAVIIPSLGNMVFPEVLSGISEMLENTELQPVVGVTDYLPEKEEKVLFDMLSWRPAGVIIAGLEHSDASRAMLAQAGVPVVEIMDIDGDPVDACVGISHRRAGRKMAEAIIEAGYRKIGFMGTKMPLDHRARKRFEGFTRTLAQSGIEIADQEFYSGGSALAKGREMTETMMDRTPDLDFLYYSNDMIGAGGLLYLMESGRKIPEDIGLAGFNAVELLEGLPQQLATMDACRSEIGQKAAEIIVARHQGQADVENTVSLRPTLQPGETLIRKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QJV0</accession>
    <name>A0A1M5QJV0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_2139</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH13843.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2139"/>
    <dbReference type="EnsemblBacteria" id="SHH13843">
        <property type="protein sequence ID" value="SHH13843"/>
        <property type="gene ID" value="SAMN05444003_2139"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 9" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="21"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="141"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="8">
        <location>
            <begin position="166"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="7">
        <location>
            <begin position="227"/>
            <end position="440"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH13843.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="440" mass="48097" checksum="FD6DD245063A86CC" modified="2017-03-15" version="1">MFSNLRASAIRITRLSALRQAVVLSLTFLVLLFLAGVFSIIEFERVFENRIEDELRGRFVVVSADVSERGFVASSYPRTGTEYVSVLPESSDVRLGFHEHRPGPDGRLRDNGDWLYLVGQVGDEYLVVGTNLGRREEFLEVILQAMGIVGLGAGLITLCVGVYFGWRSQRRMTRISRTLAAAADGDLNARTGVTRSRDDLDELSHQVDDTIEQLDVLIRQTRDFSANIAHDLKTPLARLRIRLEKALTTEIDEGDSVEEIGSALEQADEVISIFDAFLRIAKLESGTAQAKFEPIALGALLTEIEDTYAPVVEHGGRVLKLELSSPTIINGDRVLLLQLLANLIENAIRYTPDGSDLTLFAEGASIGLADTGPGIPADEYENVIKPSYRLEKSRTQDGAGLGLALVKTIADVHGAALTLSENPESESAGLIVKVDFSKKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QLL8</accession>
    <name>A0A1M5QLL8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Nitrogen regulatory protein P-II family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2179</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14669.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901005.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2179"/>
    <dbReference type="EnsemblBacteria" id="SHH14669">
        <property type="protein sequence ID" value="SHH14669"/>
        <property type="gene ID" value="SAMN05444003_2179"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011322">
        <property type="entry name" value="N-reg_PII-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015867">
        <property type="entry name" value="N-reg_PII/ATP_PRibTrfase_C"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54913">
        <property type="entry name" value="SSF54913"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH14669.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="103" mass="11278" checksum="C5721F53724FC628" modified="2017-03-15" version="1">MQRHKAKRVEIIIEAALLSRLTDSLQSADVSGYTVLPVKGGSGRSGPWTRDGQISRGSGMFAVICLIRPERLDGLLEAAFEVVEKHIGVVSITDTEILRAERF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QM22</accession>
    <name>A0A1M5QM22_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="10">ATP-binding cassette, subfamily B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_2202</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15165.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901043.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2202"/>
    <dbReference type="EnsemblBacteria" id="SHH15165">
        <property type="protein sequence ID" value="SHH15165"/>
        <property type="gene ID" value="SAMN05444003_2202"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221">
        <property type="entry name" value="PTHR24221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="35"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="72"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="152"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="181"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="267"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="37"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="358"/>
            <end position="597"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="391"/>
            <end position="398"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH15165.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="610" mass="65850" checksum="8AB4E6BD958701C0" modified="2017-03-15" version="1">MNVAKLINPYAPADGPPPATLFKFLVWSFSGGFKYVALGSVISILAGVVDVSTALILGLVIDAALTSDSASFFSENTTLLLAISLFFLILRPVVMGLSGIMQSVVIGPSLANLILSRLHRHTLGQSVSFFDDDFAGRIAQKQLQASRAATNLVVEMIHTVMFALASLIGSIILMLTIDLRTALLMTVWLIGYFFLIRFFMPKIRAASKERASKRAMVTGQVVDTVTNIKTVKLFAHKDREDRAAIDAMSELWDASVNFGWTSASFRFFLTTLAGIIPILMVGATLYSWTIGDSTAGAIATSGAIGLRLSQMTGWVSFTLMTMYADVGEVEDAIRTLSPAHTLKDLPGATELEVTKGQIVFDHTSFSYGKAVGGIHDVNLTINAGERLGIVGASGAGKSTLVALLLRLYDTEEGTISIDGSDISKVTQESLRQNIGMVTQETAMFNRSARDNILYGDPTASEDDMRNAAKRAEANEFIEGLEDHSGRTGYDAYLGERGVKLSGGQRQRIAIARAMLKDAPILVLDEATSALDSEVEASIQAALESVMDGKTVIAIAHRLSTLAQMDRIIVLDEGRIVEKGNHATLIAQNGLYTRYWNRQSGGFINVQRAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QMX4</accession>
    <name>A0A1M5QMX4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Peptide methionine sulfoxide reductase MsrA</fullName>
            <shortName evidence="4">Protein-methionine-S-oxide reductase</shortName>
            <ecNumber evidence="4">1.8.4.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Peptide-methionine (S)-S-oxide reductase</fullName>
            <shortName evidence="4">Peptide Met(O) reductase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">msrA</name>
        <name evidence="7" type="ORF">SAMN05444003_2211</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 4">
            <text>[thioredoxin]-disulfide + H2O + L-methionine = [thioredoxin]-dithiol + L-methionine (S)-S-oxide</text>
            <dbReference type="Rhea" id="RHEA:19993"/>
            <dbReference type="Rhea" id="RHEA-COMP:10698"/>
            <dbReference type="Rhea" id="RHEA-COMP:10700"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:50058"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:58772"/>
            <dbReference type="EC" id="1.8.4.11"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 4">
            <text>[thioredoxin]-disulfide + H2O + L-methionyl-[protein] = [thioredoxin]-dithiol + L-methionyl-(S)-S-oxide-[protein]</text>
            <dbReference type="Rhea" id="RHEA:14217"/>
            <dbReference type="Rhea" id="RHEA-COMP:10698"/>
            <dbReference type="Rhea" id="RHEA-COMP:10700"/>
            <dbReference type="Rhea" id="RHEA-COMP:12313"/>
            <dbReference type="Rhea" id="RHEA-COMP:12315"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16044"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:44120"/>
            <dbReference type="ChEBI" id="CHEBI:50058"/>
            <dbReference type="EC" id="1.8.4.11"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the MsrA Met sulfoxide reductase family.</text>
    </comment>
    <dbReference type="EC" id="1.8.4.11" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15346.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901061.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2211"/>
    <dbReference type="EnsemblBacteria" id="SHH15346">
        <property type="protein sequence ID" value="SHH15346"/>
        <property type="gene ID" value="SAMN05444003_2211"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033744">
        <property type="term" value="F:L-methionine:thioredoxin-disulfide S-oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008113">
        <property type="term" value="F:peptide-methionine (S)-S-oxide reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1060.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01401">
        <property type="entry name" value="MsrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002569">
        <property type="entry name" value="Met_Sox_Rdtase_MsrA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036509">
        <property type="entry name" value="Met_Sox_Rdtase_MsrA_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01625">
        <property type="entry name" value="PMSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55068">
        <property type="entry name" value="SSF55068"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00401">
        <property type="entry name" value="msrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012070355" description="Peptide methionine sulfoxide reductase MsrA" evidence="5">
        <location>
            <begin position="31"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="domain" description="PMSR" evidence="6">
        <location>
            <begin position="36"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="active site" evidence="4">
        <location>
            <position position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001497"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01401"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01625"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH15346.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="220" mass="23811" checksum="968C2B74D3EC782E" modified="2017-03-15" version="1">MSISIQTTKTALLAAGITLATVMSAKDAQAEDIQTTVFAGGCFWCVESDFESLNGVVEVVSGYAGGSIANPTYKQVTAGGSGHYEVVEVTYDADVVSYGQLLHAFFRSVDPTDAGGQFCDRGESYRTAIFVENADERAIAEQAKALAGQELGQQIVTPILDAATFYPAETYHQDYYKGTSTVWTRRGPKSQANAYKFYREACGRDERVSELWGNQALFAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QNN5</accession>
    <name>A0A1M5QNN5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Dephospho-CoA kinase</fullName>
            <ecNumber evidence="2">2.7.1.24</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Dephosphocoenzyme A kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">coaE</name>
        <name evidence="3" type="ORF">SAMN05444003_2229</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>3'-dephospho-CoA + ATP = ADP + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:18245"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57328"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.24"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Cofactor biosynthesis; coenzyme A biosynthesis; CoA from (R)-pantothenate: step 5/5.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the CoaE family.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.24" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15695.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901090.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2229"/>
    <dbReference type="EnsemblBacteria" id="SHH15695">
        <property type="protein sequence ID" value="SHH15695"/>
        <property type="gene ID" value="SAMN05444003_2229"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00241">
        <property type="reaction ID" value="UER00356"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004140">
        <property type="term" value="F:dephospho-CoA kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015937">
        <property type="term" value="P:coenzyme A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00376">
        <property type="entry name" value="Dephospho_CoA_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001977">
        <property type="entry name" value="Depp_CoAkinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01121">
        <property type="entry name" value="CoaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00152">
        <property type="entry name" value="TIGR00152"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51219">
        <property type="entry name" value="DPCK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0173">Coenzyme A biosynthesis</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 3" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="13"/>
            <end position="18"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009018"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00376"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH15695.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="197" mass="21820" checksum="66212099549A73CE" modified="2017-03-15" version="1">MKQFCLGLTGSIGMGKTTTANMFREEGISVWDADETVHRLYGAGGKAVPEIEKVFPEAIVDGAVSRPKLREVIQADLAALGTLEAIVHPLVAADRQTFRSENNGLIVFDIPLLFETSADQWLDAVLVVSTDEDTQKQRVFSRDGMTKELFEDILSRQIPDTEKQVRADFVIETASLEQTRADVRDLISQLTEKLSHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QRL8</accession>
    <name>A0A1M5QRL8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Amino acid/amide ABC transporter substrate-binding protein, HAAT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2283</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16747.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901168.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2283"/>
    <dbReference type="EnsemblBacteria" id="SHH16747">
        <property type="protein sequence ID" value="SHH16747"/>
        <property type="gene ID" value="SAMN05444003_2283"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028081">
        <property type="entry name" value="Leu-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13458">
        <property type="entry name" value="Peripla_BP_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009913259" evidence="1">
        <location>
            <begin position="23"/>
            <end position="427"/>
        </location>
    </feature>
    <feature type="domain" description="Peripla_BP_6" evidence="2">
        <location>
            <begin position="26"/>
            <end position="385"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH16747.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="427" mass="45352" checksum="19A33B4C775FC3B1" modified="2017-03-15" version="1">MKIKTLAALALSSALVAGSAAADLVIPDLSYRTGPYAAGGTPVSDGYQDYFNMLNARDGGVGGVPFRIVECETGYNTEKGVECYEATKGEGALIYQPLSTGITYQLIPKVTADNIPLHTMGYGRTSAANGEIFRNVFNYPANYWDAASVAVNYLLDENGGSLDGKTIALVYHNSAYGKEPIRTLEALSEMHGFDFTQIAVDHPGQEQKSQWLQIRRERPDYVLMWGWGVMNQVAVQEAANIGFPMENFIGNWWSGAEHDVTPAGMAADGYKSLNMNRVGDLAVFDDIKTLVHDAGNAAGDGSNLGSVLYTRGMYAAMLAAEAVAKAQEIHGVAEITPAMMRDGMEALEITEERMAELGMAGVGPAFSVSCADHGGSGLGIVQQWDAAAGNWVALTDYIAPDDSVTGPLIAEDSAAFAAENGIEPGCS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QSM9</accession>
    <name>A0A1M5QSM9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Capsular polysaccharide transport system ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2299</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17082.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901193.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2299"/>
    <dbReference type="EnsemblBacteria" id="SHH17082">
        <property type="protein sequence ID" value="SHH17082"/>
        <property type="gene ID" value="SAMN05444003_2299"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03220">
        <property type="entry name" value="ABC_KpsT_Wzt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015860">
        <property type="entry name" value="ABC_transpr_TagH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="2"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="38"/>
            <end position="45"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH17082.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="222" mass="24249" checksum="2C4FBF1145018C48" modified="2017-03-15" version="1">MIRLENVSKSFATPRGPKVVADNINATFPSGVSVALLGRNGAGKSTLMGMIGGSLKPDSGNIDIRGSISWPVGFAGSFHRDLTGAQNTRFVARVYGVDTDELLEFTEEFAELGAHFHLPVRHYSSGMKSRLAFGISIGIPFDTYLVDEVTSVGDAIFKRKSRIIFKDRLKQSGAVVVTHQMGQVRKLCDTGAVLENGQLFYYEDLEEAIAHHHELMGSDEED</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QSP3</accession>
    <name>A0A1M5QSP3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phenylacetate-CoA ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2285</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16790.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901492.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2285"/>
    <dbReference type="EnsemblBacteria" id="SHH16790">
        <property type="protein sequence ID" value="SHH16790"/>
        <property type="gene ID" value="SAMN05444003_2285"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="110"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH16790.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="397" mass="42418" checksum="11286E210B41A7FC" modified="2017-03-15" version="1">MTYFDDLETRSADAREAAQLSALNAQLEMVAKAANSCLPDVGKLQSLTDLSKLPVLRKSELGAWQKDTPPLGDIPTQNITRLFQSPGPIYEPGGSSTDWWRFSRFLHAVGIGADDVVQNTFSYHFTPAGAMFESAAMGVGAKVFPAGVGQTELQVEAAAALGVTAYAGTPDYLGAILEKADAMSVDLSKITKAAVSGGPLFPQVRQAYADRGITCLQCYGTADVGHIAYETPTMEGMVVEETAIVEIVTPGTGTPVAEGEVGEVVVTALNPDYPLIRFGTGDLSAVMPGQSPCGRTNMRIVGWRGRADQAAKIKGMFVRPEQVARFVDRHPEIDRARVEVTHDGKSDAMLVKIEAAQPNGADYAASIREVFKLRADIEFVSPGDLPRDGVVIADLRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R0T2</accession>
    <name>A0A1M5R0T2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 8 9">Chorismate synthase</fullName>
            <shortName evidence="8">CS</shortName>
            <ecNumber evidence="4 8 9">4.2.3.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">5-enolpyruvylshikimate-3-phosphate phospholyase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">aroC</name>
        <name evidence="10" type="ORF">SAMN05444003_2421</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8 9">
            <text>5-O-(1-carboxyvinyl)-3-phosphoshikimate = chorismate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:21020"/>
            <dbReference type="ChEBI" id="CHEBI:29748"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57701"/>
            <dbReference type="EC" id="4.2.3.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8 9">
            <name>FMNH2</name>
            <dbReference type="ChEBI" id="CHEBI:57618"/>
        </cofactor>
        <text evidence="8 9">Reduced FMN (FMNH(2)).</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 8 9">Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 7/7.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 8 9">Belongs to the chorismate synthase family.</text>
    </comment>
    <dbReference type="EC" id="4.2.3.5" evidence="4 8 9"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901388.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2421"/>
    <dbReference type="EnsemblBacteria" id="SHH19579">
        <property type="protein sequence ID" value="SHH19579"/>
        <property type="gene ID" value="SAMN05444003_2421"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00053">
        <property type="reaction ID" value="UER00090"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004107">
        <property type="term" value="F:chorismate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009073">
        <property type="term" value="P:aromatic amino acid family biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008652">
        <property type="term" value="P:cellular amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009423">
        <property type="term" value="P:chorismate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd07304">
        <property type="entry name" value="Chorismate_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00300">
        <property type="entry name" value="Chorismate_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000453">
        <property type="entry name" value="Chorismate_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035904">
        <property type="entry name" value="Chorismate_synth_AroC_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020541">
        <property type="entry name" value="Chorismate_synthase_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21085">
        <property type="entry name" value="PTHR21085"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01264">
        <property type="entry name" value="Chorismate_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001456">
        <property type="entry name" value="Chorismate_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103263">
        <property type="entry name" value="SSF103263"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00033">
        <property type="entry name" value="aroC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00787">
        <property type="entry name" value="CHORISMATE_SYNTHASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00789">
        <property type="entry name" value="CHORISMATE_SYNTHASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8 9" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="6 8 9" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="8" id="KW-0274">FAD</keyword>
    <keyword evidence="8" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="8" id="KW-0288">FMN</keyword>
    <keyword evidence="7 8 9" id="KW-0456">Lyase</keyword>
    <keyword evidence="8" id="KW-0521">NADP</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="8">
        <location>
            <position position="48"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="54"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="125"/>
            <end position="127"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="242"/>
            <end position="243"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="286"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="301"/>
            <end position="305"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="327"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013036"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00300"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU000605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH19579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="367" mass="39195" checksum="7D2B25AA2FA20875" modified="2017-03-15" version="1">MSINSFGHLFRFTTWGESHGPALGATVDGCPPGVPLEAGMIQQWMDKRRPGLNKNTTQRSEPDTVKILSGVFEGQTTGTPIQLMIENTDQRSKDYGDIANTFRPGHADITYHQKYGVRDYRGGGRSSARETASRVAAGGVAREAIKKVAPGVQIKGYMTQMGAKQIDRSKVDWDQIDQNDFFCPDADAAAEWNDYLAWLRKDDHNSVGAIIEVVARGVPAGIGAPIYGKLDTDLAAAMMSINAVKGVEIGEGMAAAALTGRDNADEIFMGPNGPEYSSNHSGGILGGISTGQDIVVRFAVKPTSSILSPRKSIRMDGNATEVVTKGRHDPCVGIRAVPVGEAMIACVILDHLLLDRGQTGGERGQIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RAK9</accession>
    <name>A0A1M5RAK9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2475</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23291.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901546.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH23291">
        <property type="protein sequence ID" value="SHH23291"/>
        <property type="gene ID" value="SAMN05444003_2475"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="24"/>
            <end position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH23291.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="186" mass="20471" checksum="E21818F00F865A9B" modified="2017-03-15" version="1">MNTQDLLLIEAERLVRTRGFDAMSFADLATAANIRKASVHYHFPTKADLAVKMISRYRTDVAKELEAIADAAATSADRATGFLTLYLVALQKGEAVCLCVAMSAGKNSFDSKTLTELDAFQDMALRWLIEMFRTNDGTIADVQDPEREADALFALVEGAQLVARSHTDVSKFTDATALFATRLRKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RE04</accession>
    <name>A0A1M5RE04_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Amino_oxidase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2536</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24557.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901641.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2536"/>
    <dbReference type="EnsemblBacteria" id="SHH24557">
        <property type="protein sequence ID" value="SHH24557"/>
        <property type="gene ID" value="SAMN05444003_2536"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002937">
        <property type="entry name" value="Amino_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01593">
        <property type="entry name" value="Amino_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amino_oxidase" evidence="1">
        <location>
            <begin position="20"/>
            <end position="309"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH24557.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="432" mass="48555" checksum="9F9AE579A5DEC214" modified="2017-03-15" version="1">MPFETGTAAPRKIAVIGAGISGMGAAHLLAKDHRVVLFEAEDRLGGHARTKMAGPNRDTPVDTGFIVYNYVNYPNLVKLFDHLDVPVMKSNMSFGASFDGGRLEYGLASLNALFATRRNLVSPKYYRMIRDLTVFNKHGLEASKEDGMTIGGLMEKLRLSDFFRDHYILPFSGAIWSTPKQKIMDFPAHALLKFFDNHALLAATGQHQWYTVKGGSEQYVARLGADMDRRGVDVRLAAPINAVQRTPFGVQVKTYGSEWEMFDEVVFATHSDDTLKMLADPTPTEQATLGAVRYQPNKVVLHSDTSIMPKRRAVWSSWIYTEDKDKKTDQIDLTYWMNSLQNIPQDQQFMVTLNSTRQIREELIWDECTLRHPVYDNAALAAQEQAAAMNGSNRTWFCGAWMKNGFHEDGLSSAYDVVHALNAVERLEMAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RE70</accession>
    <name>A0A1M5RE70_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2539</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24627.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901646.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2539"/>
    <dbReference type="EnsemblBacteria" id="SHH24627">
        <property type="protein sequence ID" value="SHH24627"/>
        <property type="gene ID" value="SAMN05444003_2539"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024409">
        <property type="entry name" value="DUF3833"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12915">
        <property type="entry name" value="DUF3833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH24627.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="191" mass="21271" checksum="BD1AB45F769923A1" modified="2017-03-15" version="1">MSFLPYLIIGAALMLIATFFKERYVSFWGQSSDDYADGPQFDIRERFVGPIQCEGIIYGPTGRVSSRFTAQFDCTWEGNVCMMKEIFHYDSGNVQNREWTLTLGNDGGIKAEAPDVIGAGSGQQKGSAVLLNYKLQLTEEAGGHVLDVTDWMYLMQNGSIMNRSQFRKFGIKVAELVATMRPAEPKVISAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RFX0</accession>
    <name>A0A1M5RFX0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2566</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25164.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901683.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2566"/>
    <dbReference type="EnsemblBacteria" id="SHH25164">
        <property type="protein sequence ID" value="SHH25164"/>
        <property type="gene ID" value="SAMN05444003_2566"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH25164.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="109" mass="11781" checksum="3C5463814089C782" modified="2017-03-15" version="1">MAEKRKTHKVFTLLVEVGRNAGDGLPKDATGGALMCYASGVDEAEAVRETVAILKKADLAPLDVSGYGTLEERLAEGHDISDEEKALMQRALDENSVIVAQMTPFYDKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RGU2</accession>
    <name>A0A1M5RGU2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Lon N-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2586</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25577.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901714.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2586"/>
    <dbReference type="EnsemblBacteria" id="SHH25577">
        <property type="protein sequence ID" value="SHH25577"/>
        <property type="gene ID" value="SAMN05444003_2586"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.130.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003111">
        <property type="entry name" value="Lon_prtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046336">
        <property type="entry name" value="Lon_prtase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015947">
        <property type="entry name" value="PUA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02190">
        <property type="entry name" value="LON_substr_bdg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00464">
        <property type="entry name" value="LON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88697">
        <property type="entry name" value="SSF88697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51787">
        <property type="entry name" value="LON_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lon N-terminal" evidence="1">
        <location>
            <begin position="11"/>
            <end position="201"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH25577.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="213" mass="24187" checksum="28992EB75A8C7540" modified="2017-03-15" version="1">MFKAKDLPETIAIFPLPGALLLPRSRLPLHLFEPRYLAMFDDCLKTPARMIGMIQPFDGPNGESSLHSIGCAGRVTAFSETEDGRYMITLSGISRFRVVDEVEGFTPYRRCKVNWEGFDRDLGPTEHDTQFDRKSFLSSLERYFDDQGLKTDWESLQEAEDELLINSLSMLCPFDAEDKQALLEAPSLTTRRETLMTLIEFAMRGGSGEEVMQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RUZ8</accession>
    <name>A0A1M5RUZ8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Aminotransferase</fullName>
            <ecNumber evidence="1">2.6.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2709</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.-" evidence="1"/>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30074.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902218.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2709"/>
    <dbReference type="EnsemblBacteria" id="SHH30074">
        <property type="protein sequence ID" value="SHH30074"/>
        <property type="gene ID" value="SAMN05444003_2709"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901605">
        <property type="term" value="P:alpha-amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004838">
        <property type="entry name" value="NHTrfase_class1_PyrdxlP-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00105">
        <property type="entry name" value="AA_TRANSFER_CLASS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="2">
        <location>
            <begin position="56"/>
            <end position="363"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH30074.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="374" mass="41432" checksum="841AD83319BE1945" modified="2017-03-15" version="1">MRIEPFAVEMWMNEWETRCRYNLAETCVDSITIEELLKLSGQNSADLSAILAMKMTYGAIEGSDRLRAAIADLFDHQSAENITVTHGTIAANMLVHKALVERNDHVVAIVPTYQQHYSIPESIGANVDTLELLEENSFLPDLEELRGIVHKKTKLIALTNPNNPTGALMDEAMLLRVAEIARSVGAYVLCDEVYRGTDQTGTGLTTSIADLYEKGISTGSTSKAFSLAGLRLGWIVGPQEVQQTVMIHRDYDTISVGMINDYLACLALENRDKILARSQQITRDNLVMLEDWVANEPRISWVKPNSGTTAMLKFDLPVTSRELCIDLLEKTGVMFTPGDAFGMDDHIRIGFGNSPVALQKGLQKVSKYLTEHPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RVB9</accession>
    <name>A0A1M5RVB9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">4-hydroxy-2-oxoheptanedioate aldolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2710</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the HpcH/HpaI aldolase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30101.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902220.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2710"/>
    <dbReference type="EnsemblBacteria" id="SHH30101">
        <property type="protein sequence ID" value="SHH30101"/>
        <property type="gene ID" value="SAMN05444003_2710"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005000">
        <property type="entry name" value="Aldolase/citrate-lyase_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_Kinase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040442">
        <property type="entry name" value="Pyrv_Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03328">
        <property type="entry name" value="HpcH_HpaI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="SSF51621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HpcH_HpaI" evidence="2">
        <location>
            <begin position="20"/>
            <end position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005568"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03328"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH30101.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="269" mass="29013" checksum="110B56C14381C2A8" modified="2017-03-15" version="1">MQKNKLREMWRAGTPTINAWSSIGNPFVAEIMAAQGYDSLTVDLQHGALDYTDLLPIFQATKASGATLMARVPWLDPSAIMKAMDAGAMGIICPMINNRQEAEEFVSYMRYPPHGQRSFGPTRAVFAQENYGVAANDEVLAIAMIETKEGAENLAEITSTPGLDGIYVGPADLTLGTQQGRLPPGLDRQEPEMIEIIQNIAKECQKNSIGACIHCGTPEYAAQAISWGYNLTTVAGDVRLLAAAASDSISVFHDLTSRVDAPDQTEAGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RW43</accession>
    <name>A0A1M5RW43_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">N-carbamoyl-L-amino-acid hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2706</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="2">Binds 2 Zn(2+) ions per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase M20 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30013.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901958.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2706"/>
    <dbReference type="EnsemblBacteria" id="SHH30013">
        <property type="protein sequence ID" value="SHH30013"/>
        <property type="gene ID" value="SAMN05444003_2706"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016813">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010158">
        <property type="entry name" value="Amidase_Cbmase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036264">
        <property type="entry name" value="Bact_exopeptidase_dim_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002933">
        <property type="entry name" value="Peptidase_M20"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32494">
        <property type="entry name" value="PTHR32494"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01546">
        <property type="entry name" value="Peptidase_M20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001235">
        <property type="entry name" value="Amidase_carbamoylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55031">
        <property type="entry name" value="SSF55031"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01879">
        <property type="entry name" value="hydantase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <feature type="binding site" evidence="2">
        <location>
            <position position="86"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="97"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="132"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="193"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="385"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006153"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR001235-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH30013.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="415" mass="45239" checksum="EF922FAEE5BB1F50" modified="2017-03-15" version="1">MSFGKNLRIDPDRLWDCLMEMAEIGPGIAGGNNRQTLTDDDAKGRAVFQKWCEDAGMTMGVDTMGNMFATRAGEDPEALPVYMGSHLDTQPTGGKYDGVLGVLGGLEVIRTMNDLGLKTKHPIVLTNWTNEEGTRFAPAMLASGVFAGKHGQDWAYDRVDADGKRFGDELQRIGWVGDEKVGDRKMHAMFELHIEQGPILEAENKDVGVVTHGQGLRWIECTVTGKESHTGSTPMSMRKNAGRGLALVTELVHEIAMKNQPNAVGAIGHIDVYPNSRNIIPGKVIFTVDMRTHLLDKLNGMVAEFMERAPKLCEEIETEFSCEIVGQFDPPAFDEGCVGAVREAAEELGYTHMDIVSGAGHDACWINDVAPTAMIMCPCVDGLSHNEAEEISKEWAQAGTDVLLHAVLKTAEIVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S4T3</accession>
    <name>A0A1M5S4T3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Lactoylglutathione lyase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2855</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33489.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902182.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2855"/>
    <dbReference type="EnsemblBacteria" id="SHH33489">
        <property type="protein sequence ID" value="SHH33489"/>
        <property type="gene ID" value="SAMN05444003_2855"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004360">
        <property type="entry name" value="Glyas_Fos-R_dOase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00903">
        <property type="entry name" value="Glyoxalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="3"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH33489.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="131" mass="14760" checksum="2EE274ADD9444277" modified="2017-03-15" version="1">MTKFAHSMIRVTNEDVSVAFYRNVFGLEIVDRLEFDSFTLVYMALPTAQFELELTINKDRKTPYDLGDGYGHIALIVDDLEAARALTEQAGASPKDIVDFRPGGDRIARFFFVADPDGYQIEVIEKGGRFT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S5H8</accession>
    <name>A0A1M5S5H8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Stress responsive A/B Barrel Domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2871</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33892.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902207.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2871"/>
    <dbReference type="EnsemblBacteria" id="SHH33892">
        <property type="protein sequence ID" value="SHH33892"/>
        <property type="gene ID" value="SAMN05444003_2871"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013097">
        <property type="entry name" value="Dabb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07876">
        <property type="entry name" value="Dabb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00886">
        <property type="entry name" value="Dabb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51502">
        <property type="entry name" value="S_R_A_B_BARREL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Stress-response A/B barrel" evidence="1">
        <location>
            <begin position="2"/>
            <end position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51502"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH33892.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="102" mass="11386" checksum="088526E5CFF8F738" modified="2017-03-15" version="1">MIRHIVLTRFKPDTSDEKIAEIYAGLAGVAKRLEGAQDFRGGRSESPEQIERGYMHGFTIDFDDWAALQRYSDDEEHKSYGAQLVENAVGGIDGILVLDLDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SBU5</accession>
    <name>A0A1M5SBU5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2885</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH35949.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902262.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2885"/>
    <dbReference type="EnsemblBacteria" id="SHH35949">
        <property type="protein sequence ID" value="SHH35949"/>
        <property type="gene ID" value="SAMN05444003_2885"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004573">
        <property type="term" value="F:Glc3Man9GlcNAc2 oligosaccharide glucosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009311">
        <property type="term" value="P:oligosaccharide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.50.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008928">
        <property type="entry name" value="6-hairpin_glycosidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012341">
        <property type="entry name" value="6hp_glycosidase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004888">
        <property type="entry name" value="Glycoside_hydrolase_63"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10412">
        <property type="entry name" value="PTHR10412"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48208">
        <property type="entry name" value="SSF48208"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH35949.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="411" mass="46088" checksum="0616F198E8075DD4" modified="2017-03-15" version="1">MKNLDNLARAILQGNDKGAYTIPTSGLYPYQWNWDSVLAAWGFATFDIDRAWTELETLFQSQWASGMVPHIIFHEDDPGYFPGPQVWGTGQTPPTSGISQPPVAATIAAKVWGMDPDAGRERIAKLFPKMLAWHRWYHEVRCMHGPATITHPWESGRDNCPDWDIGMAGVDGSKVAPYERRDTGHVDPEMRPKKEEYDKYVAILEFGRDVGWDDRKIMEEGPFLMADPAMTFILLRADKDLLAMAEKLGEDTAEIQGWIDDLTAAVPSLWNDDLGSYDASDIRSGAWANNISSGAFLYTYAGIDNPAMDKRTLDAWDAVTYGIPSADPKAERFDPQRYWRGPSWPFMNGLIAIGLQDAGRDLLAERLRRETAELIRKGGFYEYFDPTNGSPCGGSDFTWTAAVWLAWAGRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SEE6</accession>
    <name>A0A1M5SEE6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Na(+)-translocating NADH-quinone reductase subunit A</fullName>
            <shortName evidence="2">Na(+)-NQR subunit A</shortName>
            <shortName evidence="2">Na(+)-translocating NQR subunit A</shortName>
            <ecNumber evidence="2">7.2.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">NQR complex subunit A</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="2">NQR-1 subunit A</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">nqrA</name>
        <name evidence="4" type="ORF">SAMN05444003_2925</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>a ubiquinone + H(+) + n Na(+)(in) + NADH = a ubiquinol + n Na(+)(out) + NAD(+)</text>
            <dbReference type="Rhea" id="RHEA:47748"/>
            <dbReference type="Rhea" id="RHEA-COMP:9565"/>
            <dbReference type="Rhea" id="RHEA-COMP:9566"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16389"/>
            <dbReference type="ChEBI" id="CHEBI:17976"/>
            <dbReference type="ChEBI" id="CHEBI:29101"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="7.2.1.1"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="2">Composed of six subunits; NqrA, NqrB, NqrC, NqrD, NqrE and NqrF.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the NqrA family.</text>
    </comment>
    <dbReference type="EC" id="7.2.1.1" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902326.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2925"/>
    <dbReference type="EnsemblBacteria" id="SHH36896">
        <property type="protein sequence ID" value="SHH36896"/>
        <property type="gene ID" value="SAMN05444003_2925"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016655">
        <property type="term" value="F:oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006814">
        <property type="term" value="P:sodium ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00425">
        <property type="entry name" value="NqrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008703">
        <property type="entry name" value="NqrA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022615">
        <property type="entry name" value="NqrA_C_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37839">
        <property type="entry name" value="PTHR37839"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05896">
        <property type="entry name" value="NQRA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11973">
        <property type="entry name" value="NQRA_SLBB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01936">
        <property type="entry name" value="nqrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0406">Ion transport</keyword>
    <keyword evidence="2" id="KW-0520">NAD</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0915">Sodium</keyword>
    <keyword evidence="2" id="KW-0739">Sodium transport</keyword>
    <keyword evidence="2" id="KW-1278">Translocase</keyword>
    <keyword evidence="1 2" id="KW-0813">Transport</keyword>
    <keyword evidence="2 4" id="KW-0830">Ubiquinone</keyword>
    <feature type="domain" description="NQRA_SLBB" evidence="3">
        <location>
            <begin position="262"/>
            <end position="311"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF11973"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH36896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="447" mass="47797" checksum="71DB8A76E5DA4F7A" modified="2017-03-15" version="1">MKQFTLRKGLDLPITGAPRQEVGPSEPVSSVAVLGDDYIDLKPRVVVSEGDQVVAGSPVFFDKNMPEAKVVSPVSGRVRAVNRGARRKLVSVVIDVDQKPAKPLDFSSVGDASTRDGLVERLCAAGVWTSFRTRPYSKVPAPDSTPVAIYVTALDTEPLAADPSLAINENAEAFAKGLETVSMLTEGKTYLCQGNDTTLPGHEVEGVEAVGFAGPHPAGLAGTHMHFLEPPLAEKFVWTIGYQDVIVIGRLILTGTYDASCIVSLGGPMCKDPRLVRTVAGASVTDLVAQDVPTDTPIRMISGSVLSGRAAEGDAAYLGRYARQITLIEEDKKQIPLGWVRAMPSKYAAQPVLGSAFSKKLFPLTSNLNGGRRAMVPLGTFEGLMPQDFLPTQLLRALLVMDTDQAQLLGALELDEEDLGLVGFACPAKYEYGMALRDCLTKIEKEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SG91</accession>
    <name>A0A1M5SG91_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2957</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37607.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902377.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH37607">
        <property type="protein sequence ID" value="SHH37607"/>
        <property type="gene ID" value="SAMN05444003_2957"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015035">
        <property type="term" value="F:protein-disulfide reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007263">
        <property type="entry name" value="DCC1-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04134">
        <property type="entry name" value="DCC1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH37607.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="128" mass="14542" checksum="1FBCFEF4E09EB961" modified="2017-03-15" version="1">MTQTNETAVLYNAECPVCNFEISHYAKYAETQGLPIRFDDLNTSAREAWDLTEDQAARRLYVVHEGALTSGIPAFLVLWAQMPKYRWLGRIVGLPGIKQVAGLAYDWVLASGIYRWHLARKRRAEKAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SHE6</accession>
    <name>A0A1M5SHE6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Protein-tyrosine-phosphatase</fullName>
            <ecNumber evidence="3">3.1.3.48</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2971</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H2O + O-phospho-L-tyrosyl-[protein] = L-tyrosyl-[protein] + phosphate</text>
            <dbReference type="Rhea" id="RHEA:10684"/>
            <dbReference type="Rhea" id="RHEA-COMP:10136"/>
            <dbReference type="Rhea" id="RHEA-COMP:10137"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:46858"/>
            <dbReference type="ChEBI" id="CHEBI:82620"/>
            <dbReference type="EC" id="3.1.3.48"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the low molecular weight phosphotyrosine protein phosphatase family.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.48" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37919.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902400.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2971"/>
    <dbReference type="EnsemblBacteria" id="SHH37919">
        <property type="protein sequence ID" value="SHH37919"/>
        <property type="gene ID" value="SAMN05444003_2971"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004725">
        <property type="term" value="F:protein tyrosine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006470">
        <property type="term" value="P:protein dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023485">
        <property type="entry name" value="Ptyr_pPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036196">
        <property type="entry name" value="Ptyr_pPase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017867">
        <property type="entry name" value="Tyr_phospatase_low_mol_wt"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01451">
        <property type="entry name" value="LMWPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00719">
        <property type="entry name" value="LMWPTPASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00226">
        <property type="entry name" value="LMWPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52788">
        <property type="entry name" value="SSF52788"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0904">Protein phosphatase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LMWPc" evidence="6">
        <location>
            <begin position="1"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013064"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022912"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH37919.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="140" mass="15322" checksum="DE8BC88485BC9F37" modified="2017-03-15" version="1">MRVLCVCLGNICRSPAAEAALRDRGVEVVSAGTGDWHVGKPPYQPMQDAGQALGRDLTSLRARQFNASDFQNFDLILAMDEDNAADIERLRPAGSTTPVRLFADRAVPDPYYTRDFEGAWAMIEKAADALIADRIVQPAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SHJ4</accession>
    <name>A0A1M5SHJ4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Elongation factor 4</fullName>
            <shortName evidence="7">EF-4</shortName>
            <ecNumber evidence="7">3.6.5.n1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Ribosomal back-translocase LepA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">lepA</name>
        <name evidence="9" type="ORF">SAMN05444003_2973</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>GTP + H2O = GDP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:19669"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58189"/>
            <dbReference type="EC" id="3.6.5.n1"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Peripheral membrane protein</topology>
            <orientation evidence="7">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. LepA subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.6.5.n1" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37961.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902403.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2973"/>
    <dbReference type="EnsemblBacteria" id="SHH37961">
        <property type="protein sequence ID" value="SHH37961"/>
        <property type="gene ID" value="SAMN05444003_2973"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043022">
        <property type="term" value="F:ribosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045727">
        <property type="term" value="P:positive regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03709">
        <property type="entry name" value="lepA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.2570">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00071">
        <property type="entry name" value="LepA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006297">
        <property type="entry name" value="EF-4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035647">
        <property type="entry name" value="EFG_III/V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000640">
        <property type="entry name" value="EFG_V-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031157">
        <property type="entry name" value="G_TR_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038363">
        <property type="entry name" value="LepA_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013842">
        <property type="entry name" value="LepA_CTD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035654">
        <property type="entry name" value="LepA_IV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43512">
        <property type="entry name" value="PTHR43512"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00679">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06421">
        <property type="entry name" value="LepA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00315">
        <property type="entry name" value="ELONGATNFCT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00838">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54980">
        <property type="entry name" value="SSF54980"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01393">
        <property type="entry name" value="lepA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00301">
        <property type="entry name" value="G_TR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 7" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="3 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 7" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tr-type G" evidence="8">
        <location>
            <begin position="5"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="17"/>
            <end position="22"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="134"/>
            <end position="137"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005454"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00071"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH37961.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="599" mass="66853" checksum="210DD37FB320CD6C" modified="2017-03-15" version="1">MTDLSHIRNFSIVAHIDHGKSTLADRLIQDTNTVADRDMKAQLLDSMDIERERGITIKANTVRIEYKADDGEDYVLNLIDTPGHVDFAYEVSRSMRAVEGSLLVVDSTQGVEAQTLANVYQAIDADHEIVPVLNKIDLPASECDRVAEQIEDVIGIDATDAIQVSAKTGVGIHETLEAIVTKLPAPEGNRDAPLKAMLVDSWYDPYLGVVVLVRVIDGEMRVKDRVKFMSNGTIHQIDRLGVFRPDMENIDVLGPGEIGFITASIKQVRDTRVGDTITSEKKGAEEALDGFKPSQPVVFCGLFPVDSAQFEDLRDAIDKLALNDASFSFEMETSAALGFGFRCGFLGLLHLEVIRDRIEREYDIELITTAPSVIYHVYMRDGTKIDLHNPADMPDVTHVDHIEEPRIKATILVPDDYLGDVLKLCQERRGVQLDLTYAGSRAMTVYDLPLNEVVFDFYDRLKSVTKGYASFDYQLTGYQTDNLVKMSVLVNEEPVDALSMMVHRDRAEMRGRAMVEKLKDLIPRHMFKIPIQAAIGGKVIARETLSALRKDVTAKCYGGDATRKRKLLDKQKAGKKKMRQFGKVDIPQEAFISALKMDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SJ40</accession>
    <name>A0A1M5SJ40_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Sporulation related domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2998</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38511.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902438.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2998"/>
    <dbReference type="EnsemblBacteria" id="SHH38511">
        <property type="protein sequence ID" value="SHH38511"/>
        <property type="gene ID" value="SAMN05444003_2998"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042834">
        <property type="term" value="F:peptidoglycan binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1070">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007730">
        <property type="entry name" value="SPOR-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036680">
        <property type="entry name" value="SPOR-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05036">
        <property type="entry name" value="SPOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110997">
        <property type="entry name" value="SSF110997"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51724">
        <property type="entry name" value="SPOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012522417" evidence="2">
        <location>
            <begin position="23"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="domain" description="SPOR" evidence="3">
        <location>
            <begin position="262"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="101"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="135"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH38511.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="336" mass="34744" checksum="E500F125BEECB5BF" modified="2017-03-15" version="1">MHKLATFSLFLSVGLAVPPAFAQSIDGPAELPPATFEGSQYVDSQGCAFVRATVNGATSWIARVDQDRNPLCNFEPTFAWTVTDTIAEDDTTEVAEAVNEADTAEAASTPETAAEPVESALADEAETPVISTDLSEEVAEAPAPRPTAPAAPRRAPVVAPAPVVAETPAPIQTQPVTRDQACAGKSGIQPNLLSLSTGLPIDCGPATEIVDVPAVSDEIPRLTLAEVCQRTAETGVRYTNAETGEAVVCPEVDVQVATAAPTASVSKTYIQVGSFAVHSNADRLIARLGDLGLPVASGRSGRLKIVAAGPFTSANAQQQALATVRGLGFSDAFLRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SJN4</accession>
    <name>A0A1M5SJN4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Glutathione S-transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_3009</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GST superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38746.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902452.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3009"/>
    <dbReference type="EnsemblBacteria" id="SHH38746">
        <property type="protein sequence ID" value="SHH38746"/>
        <property type="gene ID" value="SAMN05444003_3009"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006749">
        <property type="term" value="P:glutathione metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010987">
        <property type="entry name" value="Glutathione-S-Trfase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036282">
        <property type="entry name" value="Glutathione-S-Trfase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040079">
        <property type="entry name" value="Glutathione_S-Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004045">
        <property type="entry name" value="Glutathione_S-Trfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004046">
        <property type="entry name" value="GST_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00043">
        <property type="entry name" value="GST_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02798">
        <property type="entry name" value="GST_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00019">
        <property type="entry name" value="Glutathione_Transferase_(cytos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47616">
        <property type="entry name" value="SSF47616"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50405">
        <property type="entry name" value="GST_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50404">
        <property type="entry name" value="GST_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GST N-terminal" evidence="2">
        <location>
            <begin position="1"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="domain" description="GST C-terminal" evidence="3">
        <location>
            <begin position="84"/>
            <end position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU003494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH38746.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="210" mass="23765" checksum="BC95F05E0FEC7EC1" modified="2017-03-15" version="1">MTIKLHCFGESGNAYKAALALELAGLEWEVVKVDFFNGGSRTDAYREQNVMAEAPLLIDGDFSLSQSGAIQQYITDKTGKFGGEAAEKYEVLRWVLWDNHKLSSQAGMTRFLMNFLPEDKRPEQVIKFSQSRLAAAYNTLNMHLEGRDWIVGRNVTNADLSCCSYLYYPEPFGFNRTDFPNIDRWLGNISALDGWKHPYDLMPRAFPGAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SK99</accession>
    <name>A0A1M5SK99_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transcriptional regulator, MerR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_3012</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38820.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902556.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3012"/>
    <dbReference type="EnsemblBacteria" id="SHH38820">
        <property type="protein sequence ID" value="SHH38820"/>
        <property type="gene ID" value="SAMN05444003_3012"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000551">
        <property type="entry name" value="MerR-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015358">
        <property type="entry name" value="Tscrpt_reg_MerR_DNA-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00376">
        <property type="entry name" value="MerR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09278">
        <property type="entry name" value="MerR-DNA-bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00422">
        <property type="entry name" value="HTH_MERR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50937">
        <property type="entry name" value="HTH_MERR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH merR-type" evidence="5">
        <location>
            <begin position="5"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="87"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH38820.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="133" mass="15572" checksum="5CFBA70FE4F94BB8" modified="2017-03-15" version="1">MTTETMNIREMCDAFDVTPRTLRFYEAKELLFPMREGQKRLFTKRDRARLKLILRGKRFGFALEEIRQLLDLYHMDDEQETQLSKSYELAEKHLADMEAQKAELEEAIGELKKQMEWGAAKLDALAKQKTAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SSX5</accession>
    <name>A0A1M5SSX5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phage uncharacterized protein (Putative large terminase), C-terminal domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3086</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41580.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH41580">
        <property type="protein sequence ID" value="SHH41580"/>
        <property type="gene ID" value="SAMN05444003_3086"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006517">
        <property type="entry name" value="Arc_phage_PsiM2_terminase_lsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035421">
        <property type="entry name" value="Terminase_6C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17289">
        <property type="entry name" value="Terminase_6C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01630">
        <property type="entry name" value="psiM2_ORF9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Terminase_6C" evidence="1">
        <location>
            <begin position="84"/>
            <end position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17289"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH41580.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="254" mass="30134" checksum="A4A8DC6A959EA35A" modified="2017-03-15" version="1">MEPPLAKSAPTHGRKLADGSTIELRTRIYRSDGCEVRREMGSETFNCQYQQNPIVPDGSPLRWEWFRAYEVGADRNWYQAVIQSWDTGMSADPRADFSVCTTWGFRENNWYLLDVWRGQLDYPDLKSRTLALVEQWDPDRVLIEDAATGRSLFDELFRDDWRRYERIRPENDKETRFRSSLAPVEEGKVFLPKEAPWLPVFKRELQSFPRGRNDDQVDSFSQLVNWSKGNGIYRALGREHPINIERRERQRRRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5STU4</accession>
    <name>A0A1M5STU4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Carbohydrate ABC transporter ATP-binding protein, CUT1 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_3090</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41658.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902634.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3090"/>
    <dbReference type="EnsemblBacteria" id="SHH41658">
        <property type="protein sequence ID" value="SHH41658"/>
        <property type="gene ID" value="SAMN05444003_3090"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013611">
        <property type="entry name" value="Transp-assoc_OB_typ2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08402">
        <property type="entry name" value="TOBE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="6">
        <location>
            <begin position="4"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="36"/>
            <end position="43"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH41658.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="365" mass="39887" checksum="8BFD4F5FCE35ACD3" modified="2017-03-15" version="1">MAQIRIENVRKEFGAFTAVQSSTFTIEDGEFFMLLGPSGCGKTTTLRMMAGLELPTSGEIFIDGEEVGMKPARQRDIAFVFQMFALYPHLNVGKNISYPLISQGMAKLEAKKKVHEIAEILGITDILDKRVGGLSGGDRQRVALGRAIVRDPKAFFMDEPLGALDAEFREHMSEELRALHNRMNATTVYVTHDQLEAMQMGDKIVVMNHGVVEQFGAPQDIYDWPATKFVAQFIGSPPMNFLDFDASVSEGSTAVTLESASIEVPETREGASGAITLGVRPEHLSLDDSAAYRGRITATEYLGTTQIVTLDTANGELKVRMSSEEDARVGDQTGITFDPRTISLFNSDTGQALRSAANMEVLAYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SUG9</accession>
    <name>A0A1M5SUG9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Ribonuclease P protein component</fullName>
            <shortName evidence="6">RNase P protein</shortName>
            <shortName evidence="6">RNaseP protein</shortName>
            <ecNumber evidence="6">3.1.26.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Protein C5</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rnpA</name>
        <name evidence="7" type="ORF">SAMN05444003_3121</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 6">RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>Endonucleolytic cleavage of RNA, removing 5'-extranucleotides from tRNA precursor.</text>
            <dbReference type="EC" id="3.1.26.5"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="6">Consists of a catalytic RNA component (M1 or rnpB) and a protein subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the RnpA family.</text>
    </comment>
    <dbReference type="EC" id="3.1.26.5" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902674.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3121"/>
    <dbReference type="EnsemblBacteria" id="SHH42154">
        <property type="protein sequence ID" value="SHH42154"/>
        <property type="gene ID" value="SAMN05444003_3121"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004526">
        <property type="term" value="F:ribonuclease P activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001682">
        <property type="term" value="P:tRNA 5'-leader removal"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00227">
        <property type="entry name" value="RNase_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000100">
        <property type="entry name" value="RNase_P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020539">
        <property type="entry name" value="RNase_P_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33992">
        <property type="entry name" value="PTHR33992"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00825">
        <property type="entry name" value="Ribonuclease_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00188">
        <property type="entry name" value="rnpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00648">
        <property type="entry name" value="RIBONUCLEASE_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 6" id="KW-0540">Nuclease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 6" id="KW-0819">tRNA processing</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002663"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH42154.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="127" mass="14155" checksum="36692B8AD7F80333" modified="2017-03-15" version="1">MKPPAAPDTGAPAVFVCLQVLKKRADFVACSKARRYATHGIHLQARKRRDGEADGIRVGYTCSKKVGNAVARNRAKRRLREVARRVLPKHGHDGWDYVLVGRKDITATLSFDQLQTDLIRALAKIHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SW36</accession>
    <name>A0A1M5SW36_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">LuxR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3153</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42716.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902729.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3153"/>
    <dbReference type="EnsemblBacteria" id="SHH42716">
        <property type="protein sequence ID" value="SHH42716"/>
        <property type="gene ID" value="SAMN05444003_3153"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005143">
        <property type="entry name" value="TF_LuxR_autoind-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036693">
        <property type="entry name" value="TF_LuxR_autoind-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03472">
        <property type="entry name" value="Autoind_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75516">
        <property type="entry name" value="SSF75516"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH luxR-type" evidence="2">
        <location>
            <begin position="140"/>
            <end position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00421"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH42716.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="203" mass="22490" checksum="DCD25D8B965178B3" modified="2017-03-15" version="1">MSLQSGIDQYMTRLAALAPGGFSYSLHIRFAMPLLSNQTFPQGWTDRYAEEAYALRDPIIAWGFSETGAQRWSAITIPDPFDILGQAREFNMNYGISISCGPMKSRTIASAARSDREFTDDEMDAFSKMINHLHDVTQPPEALTDAQIEALRCIAEGDRHAAAAARLNISESALKARLSSARSSLLARTTAEAIQRARDYRLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SXN6</accession>
    <name>A0A1M5SXN6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized OsmC-related protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3181</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH43287.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902774.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH43287">
        <property type="protein sequence ID" value="SHH43287"/>
        <property type="gene ID" value="SAMN05444003_3181"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003718">
        <property type="entry name" value="OsmC/Ohr_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036102">
        <property type="entry name" value="OsmC/Ohrsf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02566">
        <property type="entry name" value="OsmC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82784">
        <property type="entry name" value="SSF82784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH43287.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="197" mass="21965" checksum="B054140DF90A85FF" modified="2017-03-15" version="1">MSNDTFFHVGERSDVQPAPTQFEAKPFKKAKPPEPLEFEIVLTAEAEERQKKTGLVQVNIPGFSAVRLYCDEQTPVGDDTAPPPLAFLCAGIGFCLMTHLTDIYTARGISIKSLKLEQQVGFKTNLSNMRQLGHTTDGSMEHIETHVIIDSDEPEERIKDLMEEAENACMAHFALRNPIPWSSRLIHNGNELMANKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T6N9</accession>
    <name>A0A1M5T6N9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Outer membrane protein, adhesin transport system</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3252</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46033.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902918.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3252"/>
    <dbReference type="EnsemblBacteria" id="SHH46033">
        <property type="protein sequence ID" value="SHH46033"/>
        <property type="gene ID" value="SAMN05444003_3252"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015562">
        <property type="term" value="F:efflux transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003423">
        <property type="entry name" value="OMP_efflux"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02321">
        <property type="entry name" value="OEP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH46033.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="480" mass="52978" checksum="8CE99461211668CC" modified="2017-03-15" version="1">MGNLTGLLKATRGLFRLSAIAAFCFVIAGPAQSLTVEEAILFVLETNPEISAAEANKQAIEFELDQARSLGTPRFELEGRAEASINRGTRTSDSTAADGAIGGWEVRGRMVQTLLDGGFVRSEVERQAYRIDGAALRVLERSEFLSLEAVRVYADVLRTRQLVRLARNNVAYHREVFGRIERAYQNGVVGIADYQQAEERVFLADDVLLEFELDAIVAETLFLETVGVDPTNLSSVPSVARLVPATLDEALAKARSLNPTVRFMQADVGAAEALSRRAASELTPDLNLEADVRYGEDIGGFEGEVNDARIGLVLRYDFQGGRKNAAREEQIRRASESRARLLTQVRLVEREVRQSWAALQSAKRRASVLSRQAKLSGELLESYESEFEVGSRSLLDVLNTQNALFQSEANLVNARSTQVFVHYRLLAASGVLLPSFGIELPEDARDYARELERVPGVNPAPTSIRNDARSLSEFRRSLDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T724</accession>
    <name>A0A1M5T724_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Urease subunit beta</fullName>
            <ecNumber evidence="2">3.5.1.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Urea amidohydrolase subunit beta</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">ureB</name>
        <name evidence="3" type="ORF">SAMN05444003_3272</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>2 H(+) + H2O + urea = CO2 + 2 NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:20557"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16199"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="EC" id="3.5.1.5"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Nitrogen metabolism; urea degradation; CO(2) and NH(3) from urea (urease route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Heterotrimer of UreA (gamma), UreB (beta) and UreC (alpha) subunits. Three heterotrimers associate to form the active enzyme.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the urease beta subunit family.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.5" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46514.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902950.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3272"/>
    <dbReference type="EnsemblBacteria" id="SHH46514">
        <property type="protein sequence ID" value="SHH46514"/>
        <property type="gene ID" value="SAMN05444003_3272"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00258">
        <property type="reaction ID" value="UER00370"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035550">
        <property type="term" value="C:urease complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009039">
        <property type="term" value="F:urease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043419">
        <property type="term" value="P:urea catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00407">
        <property type="entry name" value="Urease_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01954">
        <property type="entry name" value="Urease_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002019">
        <property type="entry name" value="Urease_beta"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036461">
        <property type="entry name" value="Urease_betasu_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00699">
        <property type="entry name" value="Urease_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51278">
        <property type="entry name" value="SSF51278"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00192">
        <property type="entry name" value="urease_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH46514.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="101" mass="11031" checksum="C0C8F29F111D920B" modified="2017-03-15" version="1">MIPGELFPADGTLTLNPDVEVTVLMVANTGDRPIQVGSHYHFAESNPALEFDREAAYGMRLDIAAGTAVRFEPGQRREVNLIPISGAQRIFGFNQKVMGDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T7S1</accession>
    <name>A0A1M5T7S1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">TRAP-type C4-dicarboxylate transport system, small permease component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_3282</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902966.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3282"/>
    <dbReference type="EnsemblBacteria" id="SHH46762">
        <property type="protein sequence ID" value="SHH46762"/>
        <property type="gene ID" value="SAMN05444003_3282"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007387">
        <property type="entry name" value="TRAP_DctQ"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35011">
        <property type="entry name" value="PTHR35011"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04290">
        <property type="entry name" value="DctQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="27"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="60"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="100"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="145"/>
            <end position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH46762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="207" mass="22725" checksum="7E60AF2CAAC5B145" modified="2017-03-15" version="1">MAMASLVLADDSTLSKIDQHLLKLEKFLALLSGLAVFALMILAVVSVGGRNFFASPLPGYVDWIEQAMPLIAFMGISYVQREGGHIRMDIVVGKLRGRTLYIVELLTTLLILLLMAMLVWGTWSHFSRSFDFNAPMWSRDSSMDIALPIWPAKLLAPIAFSVLCVRLSLQAWAYCRAIATGNPIAVPLPADAAKQASMEADQLKGED</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TBJ1</accession>
    <name>A0A1M5TBJ1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3317</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000010">
        <property type="protein sequence ID" value="SHH48175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH48175">
        <property type="protein sequence ID" value="SHH48175"/>
        <property type="gene ID" value="SAMN05444003_3317"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH48175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="30" mass="3414" checksum="B1409B6C72301F4E" modified="2017-03-15" version="1">MWQNYVVPVKLKQGFLDGVMLAAALVYEVM</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L1P5</accession>
    <name>A0A1M5L1P5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transcriptional regulator, TraR/DksA family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_0051</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59014.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898386.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG59014">
        <property type="protein sequence ID" value="SHG59014"/>
        <property type="gene ID" value="SAMN05444003_0051"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000962">
        <property type="entry name" value="Znf_DskA_TraR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01258">
        <property type="entry name" value="zf-dskA_traR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51128">
        <property type="entry name" value="ZF_DKSA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="DksA C4-type" evidence="5">
        <location>
            <begin position="36"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="dksA C4-type" evidence="4">
        <location>
            <begin position="79"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00510"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG59014.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="106" mass="11776" checksum="BB1F9B2149EA169F" modified="2017-03-15" version="1">MTLTDRLHARLKDLDAEDAAGQQGEKTVELDQQAVGRLSRMDALQYQAMAQAQARRRAAERQKIHAALKRIDEGEYGYCTDCGEDIEPKRLSADPATALCLDCLRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L1S3</accession>
    <name>A0A1M5L1S3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 7">Dihydrofolate reductase</fullName>
            <ecNumber evidence="3 7">1.5.1.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_0050</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 7">Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>(6S)-5,6,7,8-tetrahydrofolate + NADP(+) = 7,8-dihydrofolate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:15009"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57451"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.5.1.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 7">Cofactor biosynthesis; tetrahydrofolate biosynthesis; 5,6,7,8-tetrahydrofolate from 7,8-dihydrofolate: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 7 8">Belongs to the dihydrofolate reductase family.</text>
    </comment>
    <dbReference type="EC" id="1.5.1.3" evidence="3 7"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58988.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898384.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0050"/>
    <dbReference type="EnsemblBacteria" id="SHG58988">
        <property type="protein sequence ID" value="SHG58988"/>
        <property type="gene ID" value="SAMN05444003_0050"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00077">
        <property type="reaction ID" value="UER00158"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004146">
        <property type="term" value="F:dihydrofolate reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006545">
        <property type="term" value="P:glycine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006730">
        <property type="term" value="P:one-carbon metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046654">
        <property type="term" value="P:tetrahydrofolate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00209">
        <property type="entry name" value="DHFR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.430.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012259">
        <property type="entry name" value="DHFR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024072">
        <property type="entry name" value="DHFR-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017925">
        <property type="entry name" value="DHFR_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001796">
        <property type="entry name" value="DHFR_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48069">
        <property type="entry name" value="PTHR48069"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00186">
        <property type="entry name" value="DHFR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000194">
        <property type="entry name" value="DHFR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53597">
        <property type="entry name" value="SSF53597"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00075">
        <property type="entry name" value="DHFR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51330">
        <property type="entry name" value="DHFR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0521">NADP</keyword>
    <keyword evidence="7" id="KW-0554">One-carbon metabolism</keyword>
    <keyword evidence="5 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DHFR" evidence="9">
        <location>
            <begin position="1"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009539"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012856"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00025067"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRNR" id="PIRNR000194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004474"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51330"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG58988.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="160" mass="17611" checksum="3144BFA6284EECB9" modified="2017-03-15" version="1">MISLIVGRARNGAIGRDGDIPWHVPEDLKFFQRETMGGAIIMGRKTWESLPFKPLKNRLNVVVSRGEFEGADICVNSVTAAVNAARAAGHSRIYGIGGAGIYEAMLPLAYRLLITEVDLEIEDADTFFPEFDESAWSVELGIVLKAEGPRCVMREFLRVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L1Y0</accession>
    <name>A0A1M5L1Y0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Hint domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0039</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58759.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898369.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG58759">
        <property type="protein sequence ID" value="SHG58759"/>
        <property type="gene ID" value="SAMN05444003_0039"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028992">
        <property type="entry name" value="Hedgehog/Intein_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13403">
        <property type="entry name" value="Hint_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hint_2" evidence="1">
        <location>
            <begin position="53"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13403"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG58759.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="189" mass="21111" checksum="84429D16C1B869D6" modified="2017-03-15" version="1">MSLNESESALLQRIAAQVVQPAARAPIDVAEPEIDLDVVEQPSVEKLWDFAGFGPKSRILTSFGYVPMEALRRRDPIKTFDGRFLEVEKVDEIRLDRRYLIDHPEAQPIRLPKNSVGGVAPNTDLYVSGAQKLRSTDRTGETVTAEDMIGRAGIMRKSHGYFTYYRFHCGQACTVQIDGLWCEIAGPDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L2E8</accession>
    <name>A0A1M5L2E8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0047</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58929.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0047"/>
    <dbReference type="EnsemblBacteria" id="SHG58929">
        <property type="protein sequence ID" value="SHG58929"/>
        <property type="gene ID" value="SAMN05444003_0047"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013132978" evidence="1">
        <location>
            <begin position="32"/>
            <end position="481"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG58929.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="481" mass="52360" checksum="78CA24D7F7FD4FE5" modified="2017-03-15" version="1">MDRSVTTRSLISTLKGIGAALFFACGQVASAETTLDLTFPQARQLAFNLLVDGNAAAALEVADGLITANANDQRAWIIRAGALRVLEQPSLARQAARRAYWLAESPARRYEAARLAASANADEERFSWAQFWLRLARENAPDEETANRVAQDYQALRRINPWSFNASFGVAPSANINGGSQADVGYLDDNVDEGLAAFLAFFGIYDPESGLRLLGDNERALSGIEANLDFGAQYRLNATENSATFISADVGIRRYRLSDEAKEQSPTSSNRDFNRDSLSFGIRHLTRLGEDLRPATFALSIGKNWYASEQSNRYMAVNASQPFLLDPQNLLTFGISASASASYSDDIPVRTFGANAQLLSILESGDRVRSNFQILRSNSDIEDSDYVSLSAGVSYIFAQPILGTFVTINSDAVFSDIGDTRFAPFDREDITVSIGADVAAPQAEVFGFQPVVSVLAERTRSSVDQFDAEGVSVGLDFRSSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L4K2</accession>
    <name>A0A1M5L4K2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">L-serine dehydratase</fullName>
            <ecNumber evidence="9">4.3.1.17</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">SAMN05444003_0099</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>L-serine = NH4(+) + pyruvate</text>
            <dbReference type="Rhea" id="RHEA:19169"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="EC" id="4.3.1.17"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 9">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the iron-sulfur dependent L-serine dehydratase family.</text>
    </comment>
    <dbReference type="EC" id="4.3.1.17" evidence="9"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59948.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898451.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0099"/>
    <dbReference type="EnsemblBacteria" id="SHG59948">
        <property type="protein sequence ID" value="SHG59948"/>
        <property type="gene ID" value="SAMN05444003_0099"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003941">
        <property type="term" value="F:L-serine ammonia-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006094">
        <property type="term" value="P:gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029009">
        <property type="entry name" value="ASB_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004644">
        <property type="entry name" value="Fe-S_L-Ser_mono"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005130">
        <property type="entry name" value="Ser_deHydtase-like_asu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005131">
        <property type="entry name" value="Ser_deHydtase_bsu"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03313">
        <property type="entry name" value="SDH_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03315">
        <property type="entry name" value="SDH_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143548">
        <property type="entry name" value="SSF143548"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00720">
        <property type="entry name" value="sda_mono"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 9" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="9" id="KW-0312">Gluconeogenesis</keyword>
    <keyword evidence="6 9" id="KW-0408">Iron</keyword>
    <keyword evidence="7 9" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="8 9" id="KW-0456">Lyase</keyword>
    <keyword evidence="5 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SDH_beta" evidence="11">
        <location>
            <begin position="4"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="domain" description="SDH_alpha" evidence="10">
        <location>
            <begin position="188"/>
            <end position="451"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU366059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF03313"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF03315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG59948.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="457" mass="47862" checksum="DAA301598E783158" modified="2017-03-15" version="1">MFLSVFDMFKVGVGPSSSHTIGPMVAANRFLDHLRAQPFNIAGVRASLHGSLAFTGVGHATDRAVILGLAGIRSDAYDADRAEAELARISQEKTVEPAGLGSLKFDPAKDVIFDYDNILAGHANGMKLYATDAQGDVIIEETYYSIGGGFVLTAAELADGKDTDSGAPVPFPFHTAAEMLEMAASSGKSIAEMKRANELSRMPNSDLDSGLSRIWQVMNDCIDRGLATEGILPGGLSVRRRAKGIYDALMAERGMNLTAPHTINDWMSTYAMAVNEENAAGGQIVTAPTNGAAGVVPATIRYWLDHVPDATVGRVPEFLLTAAAIGGLIKYNASISGAECGCQAEVGSAAAMAAAGLCDVMGGTPEQVENAAEIALEHHLGMTCDPVKGLVQVPCIERNGLGTIKAVSAASLAIRGDGKHMVHLDVAIETMRQTGEDMNAKYKETALGGLAVNVPNC</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L656</accession>
    <name>A0A1M5L656_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Imidazole glycerol phosphate synthase subunit HisF</fullName>
            <ecNumber evidence="9">4.3.2.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">IGP synthase cyclase subunit</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">IGP synthase subunit HisF</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">ImGP synthase subunit HisF</fullName>
            <shortName evidence="9">IGPS subunit HisF</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">hisF</name>
        <name evidence="11" type="ORF">SAMN05444003_0128</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8 9">IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>5-[(5-phospho-1-deoxy-D-ribulos-1-ylimino)methylamino]-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide + L-glutamine = 5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide + D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate + H(+) + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:24793"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58278"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:58475"/>
            <dbReference type="ChEBI" id="CHEBI:58525"/>
            <dbReference type="EC" id="4.3.2.10"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 9">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 5/9.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4 9">Heterodimer of HisH and HisF.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 9 10">Belongs to the HisA/HisF family.</text>
    </comment>
    <dbReference type="EC" id="4.3.2.10" evidence="9"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60572.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898485.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0128"/>
    <dbReference type="EnsemblBacteria" id="SHG60572">
        <property type="protein sequence ID" value="SHG60572"/>
        <property type="gene ID" value="SAMN05444003_0128"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00010"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000107">
        <property type="term" value="F:imidazoleglycerol-phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04731">
        <property type="entry name" value="HisF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01013">
        <property type="entry name" value="HisF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006062">
        <property type="entry name" value="His_biosynth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004651">
        <property type="entry name" value="HisF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00977">
        <property type="entry name" value="His_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="SSF51366"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00735">
        <property type="entry name" value="hisF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 9 10" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 9 10" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="7 9" id="KW-0456">Lyase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" evidence="9">
        <location>
            <position position="11"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000619"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009667"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00025475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003657"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG60572.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="253" mass="26459" checksum="E9598C4599E5115B" modified="2017-03-15" version="1">MLKTRIIPCLDVAEGRTVKGVNFVDLIDAGDPVEQAIAYNAAGADELCFLDIKATHENRGTMFDLATRTAEQCFMPLTIGGGVRTHHDVRDLLLAGADKVSFNSAAVANPNVVAEAAMRFGSQCIVVAIDAKTVVPGKWEIFTHGGRKPTGIDAVEFAKTVVAKGAGEILLTSMDRDGTKSGFNLPLTRAVSDAVNVPVIASGGVGTLDHLVEGVTEGGASAVLAASIFHFGTYTIAEAKEHMAKAGIPVRQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L693</accession>
    <name>A0A1M5L693_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized conserved protein, DUF2147 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0130</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60614.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898488.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0130"/>
    <dbReference type="EnsemblBacteria" id="SHG60614">
        <property type="protein sequence ID" value="SHG60614"/>
        <property type="gene ID" value="SAMN05444003_0130"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019223">
        <property type="entry name" value="DUF2147"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09917">
        <property type="entry name" value="DUF2147"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009911927" evidence="1">
        <location>
            <begin position="21"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="domain" description="DUF2147" evidence="2">
        <location>
            <begin position="26"/>
            <end position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG60614.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="130" mass="13509" checksum="19378153222E7B13" modified="2017-03-15" version="1">MRKIVLALVALFGFATAAAAQDAAVGVWQTEPDDGAFAHIAISPCGGAFCGVIQRVFDTSGTQIESDNIGLQIVIDMVPNGDGSYNGQVFRPSNGKTYTGKMNVSGDRLELKGCIAGGLLCASQNWVRAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LAW9</accession>
    <name>A0A1M5LAW9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DnaJ domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0196</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62158.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898571.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0196"/>
    <dbReference type="EnsemblBacteria" id="SHG62158">
        <property type="protein sequence ID" value="SHG62158"/>
        <property type="gene ID" value="SAMN05444003_0196"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd06257">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001623">
        <property type="entry name" value="DnaJ_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036869">
        <property type="entry name" value="J_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00226">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00625">
        <property type="entry name" value="JDOMAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00271">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46565">
        <property type="entry name" value="SSF46565"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50076">
        <property type="entry name" value="DNAJ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="J" evidence="2">
        <location>
            <begin position="149"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG62158.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="211" mass="24274" checksum="8FC20D9918301EBD" modified="2017-03-15" version="1">MDKKDPFGFDMSVSSSKKKNPRGRRGMSGASETSTRICDHEGCNEPGLYRAPKSPDTMDDYFWFCQTHVREYNLKWNFFDSTSEAEIMAQMERDKTWERPTKPFKRSVEEAAWARLGIDDAHQVLGGNATQNPGKNGGAKRRLPPTERRAMDILEAKDDWSKPQIRKAYKALIKVLHPDMNGGDRSQEEQLAEVVWAWDQIKDSRNFRDAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LEL4</accession>
    <name>A0A1M5LEL4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Trimethylamine---corrinoid protein Co-methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0251</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the trimethylamine methyltransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63511.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0251"/>
    <dbReference type="EnsemblBacteria" id="SHG63511">
        <property type="protein sequence ID" value="SHG63511"/>
        <property type="gene ID" value="SAMN05444003_0251"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015948">
        <property type="term" value="P:methanogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.480">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038601">
        <property type="entry name" value="MttB-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010426">
        <property type="entry name" value="MTTB_MeTrfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06253">
        <property type="entry name" value="MTTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG63511.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="499" mass="52828" checksum="D56C0361F2053AF3" modified="2017-03-15" version="1">MKRGGRKARHAQRASKPQVSPAPPGQIGGRFRPLDEVDLLEIKATSFRLLAELGMGEVPNKLADLLIQGGASKQGSRICFPPHLVEDAIAAAPKSFTLHGRDPSRSIDIGGASVHFGTGGAAVQTLDLDTGLYRASTLADLKDFTRLQDTLENVSWFTRCCIATDVPDIFDLDLNTAFALLKNTTKPVATAFTVAENVAPIVEMFDIAAGGPGAFAKRPFVKAHISPVISPMRYGEDAVDVTFACLEHNIPVSCITAAQAGATAPATLAGFLAQSLAETLASLVMVHVIKPGHPMVFSNWPFVVDLRTGAFAGGGGETALLNAASAQLSNWLGLPSGVSASMSDAKAIDAQYGSEKAMTSLAAALAGGNLIYESSGMTASLLGASFEAFVLDDEMHSNTYRILRGCEVTEENLGFDAICEAVLGDGHFLGSGHTLAAMERDYVYPSLSDRDTPKGWEDAGAKDAWARANARAREILEEHHPTYLTAGQEAEIRAKFNIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LFH6</accession>
    <name>A0A1M5LFH6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, ArsR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0234</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63133.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898647.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0234"/>
    <dbReference type="EnsemblBacteria" id="SHG63133">
        <property type="protein sequence ID" value="SHG63133"/>
        <property type="gene ID" value="SAMN05444003_0234"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001845">
        <property type="entry name" value="HTH_ArsR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01022">
        <property type="entry name" value="HTH_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00778">
        <property type="entry name" value="HTHARSR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00418">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50987">
        <property type="entry name" value="HTH_ARSR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH arsR-type" evidence="1">
        <location>
            <begin position="8"/>
            <end position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG63133.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="103" mass="11415" checksum="4E1475162FFE0774" modified="2017-03-15" version="1">MKDMHLDQMDAAAEEAAQFLKALSNPGRLRLLCALVPGEMTVGELEQTLGASQSYVSGQLMKLREQGFVSCSKSGRVVTYKIADNRVQRVLERLYEVFCSDVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LFK4</accession>
    <name>A0A1M5LFK4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Predicted oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0265</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63827.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898694.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0265"/>
    <dbReference type="EnsemblBacteria" id="SHG63827">
        <property type="protein sequence ID" value="SHG63827"/>
        <property type="gene ID" value="SAMN05444003_0265"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020471">
        <property type="entry name" value="AKR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018170">
        <property type="entry name" value="Aldo/ket_reductase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023210">
        <property type="entry name" value="NADP_OxRdtase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036812">
        <property type="entry name" value="NADP_OxRdtase_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00248">
        <property type="entry name" value="Aldo_ket_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00069">
        <property type="entry name" value="ALDKETRDTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51430">
        <property type="entry name" value="SSF51430"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00062">
        <property type="entry name" value="ALDOKETO_REDUCTASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldo_ket_red" evidence="1">
        <location>
            <begin position="15"/>
            <end position="283"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG63827.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="296" mass="32510" checksum="803B7ADA13652A43" modified="2017-03-15" version="1">MKRITIKKDLSFSQIIYGMWRLAEAEDTSPAHVQAKIESCLEQGITTMDQADIYGGYEAEEVFGNALKTAPHLKDKIEVVTKCDILIPAGRYANVSGKFYDTSRAHIVASVDHSLRLMNIDRIDTLLIHRPDPFMDHHETGAALDEVVASGKVRTVGVSNFKLHDWTLLQSAMKNELVTNQIELSLSAHEGFTNGDVAYLQERNIPIMAWSPLGGGSLMTSKGPVQDAMTKVATENDVDTGAVAVAWLLAHPANIMAVMGTNNLSRIGKLSDALKVRMDRETWFELYTAALGAEVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LFR5</accession>
    <name>A0A1M5LFR5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alkanesulfonate monooxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0266</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63848.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898696.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0266"/>
    <dbReference type="EnsemblBacteria" id="SHG63848">
        <property type="protein sequence ID" value="SHG63848"/>
        <property type="gene ID" value="SAMN05444003_0266"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011251">
        <property type="entry name" value="Luciferase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036661">
        <property type="entry name" value="Luciferase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00296">
        <property type="entry name" value="Bac_luciferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51679">
        <property type="entry name" value="SSF51679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_luciferase" evidence="1">
        <location>
            <begin position="40"/>
            <end position="335"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG63848.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="386" mass="42743" checksum="C94B930DC89E0051" modified="2017-03-15" version="1">MSQIVPVTSADLDAAEVSWFSALCSDDYQFLGVPDGDLRSSWEHCRDIALTAEEQGFRNILAPSSYQVGQDTLSFVAGMAPLTSKMNFLAAIRCGEMQPIMLARTVATLDHMLKGRLTLNVISSDFPGEVAESAYRYKRSHEVVEILRQAWTQDEINFRGEVYNFENVPTGPAKPYQQNGGPLLYFGGYSPAALELCGAQCDVYLMWPETKDMLTQRMKDVHAVAERHGRTLDYGLRVHMIVRDTEAEAKEYADYIASKLDDEYGKLIRDRAHDSISLGVAHQARARELADKYGYTEPGLWTGVGRARSGCGAALVGSTDQILSKIEGYQKMGIRAFIFSGYPHIDEAKHFGKRVMPELKTCSLPHAYGRVPAETPATPLGTGPRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LGV3</accession>
    <name>A0A1M5LGV3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Paraquat-inducible protein A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0286</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64362.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898716.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0286"/>
    <dbReference type="EnsemblBacteria" id="SHG64362">
        <property type="protein sequence ID" value="SHG64362"/>
        <property type="gene ID" value="SAMN05444003_0286"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007498">
        <property type="entry name" value="PqiA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04403">
        <property type="entry name" value="PqiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="53"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="88"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="121"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG64362.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="154" mass="16673" checksum="82BF2082226DBB5D" modified="2017-03-15" version="1">MQLFLRIANLSLLVLFPIAWFAPLLRAGLLPLFGLSEISVISGMQSLWETDVILALLVSFLAIFAPYLKTIGLALVQFNLLKDATLPVLTWIGKLAMADIFLIALYIVVVKGIGIGQVETAWGLYLFTACILSSIIISGLTKSSEATPSSSFEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LGV4</accession>
    <name>A0A1M5LGV4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0278</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64180.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0278"/>
    <dbReference type="EnsemblBacteria" id="SHG64180">
        <property type="protein sequence ID" value="SHG64180"/>
        <property type="gene ID" value="SAMN05444003_0278"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00118">
        <property type="entry name" value="LysM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.70.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011055">
        <property type="entry name" value="Dup_hybrid_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018392">
        <property type="entry name" value="LysM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036779">
        <property type="entry name" value="LysM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016047">
        <property type="entry name" value="Peptidase_M23"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01476">
        <property type="entry name" value="LysM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01551">
        <property type="entry name" value="Peptidase_M23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00257">
        <property type="entry name" value="LysM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51261">
        <property type="entry name" value="SSF51261"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54106">
        <property type="entry name" value="SSF54106"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51782">
        <property type="entry name" value="LYSM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LysM" evidence="2">
        <location>
            <begin position="161"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="136"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="208"/>
            <end position="243"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG64180.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="385" mass="40051" checksum="BB001EB531955413" modified="2017-03-15" version="1">MALNRLLWTGVAAVSLVACDTVPDFDLRDLGDGFDTSAAVANLPDRPTPDARGVISYPNYQVVVAQRDDTIRTIATRLNLDATTLASFNGIEPDVALRQGEIIALPSRVAEPAGGPIQTLDIASVATTALERVDSAQPTVTTLPSAPAAAPAPTQSSPEPIQHRVQPGETIFQIGRLYNVPVQNLTEWNGLGSDLTIREGQVLLVPRAGARPPAATSTNDVSEPGAGSETPVPPSATVPLPEDDTIPLVEPTPTPEAPDLGTATQEPATTARFIRPVEGSVIRAFAPGRNEGIDIGVAAGTAVKAADAGSVAAVTTDTNGVAIVVIKHADNLLTVYTNLEGLTVEKNDSVSRGQTIGTVKAGDPSFVHFEVRRGLEALDPAEFLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LGZ5</accession>
    <name>A0A1M5LGZ5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phospholipid/cholesterol/gamma-HCH transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0288</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64402.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898720.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0288"/>
    <dbReference type="EnsemblBacteria" id="SHG64402">
        <property type="protein sequence ID" value="SHG64402"/>
        <property type="gene ID" value="SAMN05444003_0288"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030802">
        <property type="entry name" value="Permease_MalE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30188">
        <property type="entry name" value="PTHR30188"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02405">
        <property type="entry name" value="MlaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="47"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="147"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="201"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="232"/>
            <end position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG64402.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="258" mass="26743" checksum="2A4C1550A47CA2FF" modified="2017-03-15" version="1">MTRFFALIGAASFSALAFLGRLSFFAFDSLRHIVTPPFYGRAFGTALIQIGFLSLPVVGLTALFTGGALALQIYAGGARFSAEAAVPQIVAIGMVRELGPVLVGLMVAARVTSSIAAEIATMKVTEQIDALITLSTNPMKYLTAPRVLAATLVTPFLVAVGDTIGIMGGYIIGTERLGFASAAYLQNTVDFLEAKDIASSLVKGAVFGFIAALMGCFFGMNSDRGAMGVGRATKSAVVAASVLILAANFVLTEAFFSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LKJ2</accession>
    <name>A0A1M5LKJ2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Aminotransferase</fullName>
            <ecNumber evidence="1">2.6.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0340</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.-" evidence="1"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65420.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898788.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0340"/>
    <dbReference type="EnsemblBacteria" id="SHG65420">
        <property type="protein sequence ID" value="SHG65420"/>
        <property type="gene ID" value="SAMN05444003_0340"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901605">
        <property type="term" value="P:alpha-amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004838">
        <property type="entry name" value="NHTrfase_class1_PyrdxlP-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00105">
        <property type="entry name" value="AA_TRANSFER_CLASS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="2">
        <location>
            <begin position="32"/>
            <end position="369"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG65420.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="381" mass="41597" checksum="50D5D9C0312F0E24" modified="2017-03-15" version="1">MRNSTRGDVDPFIVMDVMEAARQAEAAGRSIIHMEVGQPGTGAPKAATEALAAALDDPLGYTVGLGLPELRQRIAKLYDEWYGVDLDPQRVVVTAGASGAFLLAFSALFDNGERVGLGLPCYPSYRQILRAVGLTPVEMPTAAAARYQPVPSDVAAHQLDGLIVASPANPTGTMLDLVEIRALSDACQEAGAAFISDEIYHGIDYDKKPVTALQATDEVYVVNSFSKYFSMTGWRVGWMVVPEDHVRRVERLAQNMFICAPHASQRLALAAIDCDDELQGNLEVYAENRRLMLEGLPKAGFTKFAPPDGAFYVYADVSDYTDDALSFASEILDQTGVAVTPGLDFDPDEGRRWLRFSYARSTADIIEGLQRLERFMSERQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LNR1</accession>
    <name>A0A1M5LNR1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Methyltransferase</fullName>
            <ecNumber evidence="4">2.1.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_0401</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the trimethylamine methyltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.-" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66782.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898882.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0401"/>
    <dbReference type="EnsemblBacteria" id="SHG66782">
        <property type="protein sequence ID" value="SHG66782"/>
        <property type="gene ID" value="SAMN05444003_0401"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015948">
        <property type="term" value="P:methanogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.480">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038601">
        <property type="entry name" value="MttB-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010426">
        <property type="entry name" value="MTTB_MeTrfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06253">
        <property type="entry name" value="MTTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037567">
        <property type="entry name" value="MTTB_MeTrfase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4 6" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR037567"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG66782.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="519" mass="55514" checksum="470ED2B967E0647E" modified="2017-03-15" version="1">MNDESPQRAGRPRRSGGRAARTALRSAKLAEDLRPVRAGMAGGTYKPLSDADVDAIYEAALVALEEIGLIDAPQSGIDAMVGAGAILGEDGRLRFPRGLVKEMLGKAAKDVTLYGRDPKYDMHLTGTNVHFGTAGAAVHMVDVEGRNYRDSTVQDLHDAAKIVQQMDNIHFLQRPMVCRDITDNREMDYNTIYACVSGTTKHVGTSFTEPDFVGDCLEMLHMMAGSEEAWRERPFVLNSNCFVVPPMKFATESCQVMENCIAGGMPVLLLSAGQAGATAPAPIAGAIVQAVAECLAGVVYVNAIKPGHTAVFGTWPFVSDLRTGAMSGGSGEQALLTAGCAQMHQFLGLPGGAAAGIADAKLPDMQAGWEQMCSNVMAGLSGLNMVYEAAGMHASLLGFCHESLVLGNDLLGQAMRCVRGIEVNEATLGLDTMRSVCMGGPGHYLGSDQTLALMQTEYIYPEVADRTSPKEWQELDKPDLIKTAIAQKEKILAERSRVALSPDVDAAIRERFNIHLPVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LNV2</accession>
    <name>A0A1M5LNV2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Permease of the drug/metabolite transporter (DMT) superfamily</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0395</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66636.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898870.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0395"/>
    <dbReference type="EnsemblBacteria" id="SHG66636">
        <property type="protein sequence ID" value="SHG66636"/>
        <property type="gene ID" value="SAMN05444003_0395"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="32"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="74"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="98"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="122"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="146"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="177"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="209"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="240"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="262"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="5"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="149"/>
            <end position="278"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG66636.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="296" mass="31302" checksum="B8D73902306E17EA" modified="2017-03-15" version="1">MENLRGAAFMVLAMGFFAIEDALIKSVADDIPVGQIITVTCGGALILFLVWSVARGIPLWNDGYLDRRVNLRSLSDVIGSCFFVTSLSLIPLTTASAVIQATPLVVALGAALFLGQTIGWRRWIAIIIGFIGVMIIIRPGTEGFDGYTLLAVGGMLGLAARDLLTRGLTVDLSGVQLATHTFALLCPAGVLLAYSQGQSFVIPNFEQSLILAATVVIGILAYLTIVAATRDGNAGIISSFRYSRMLFALIIGYAFFAERPDAATLIGAAIIIASGLFTLLREARLRKTSPSGTGTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LQ46</accession>
    <name>A0A1M5LQ46_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">(R)-citramalate synthase</fullName>
            <ecNumber evidence="4">2.3.1.182</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_0420</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>acetyl-CoA + H2O + pyruvate = (3R)-citramalate + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:19045"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30934"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="EC" id="2.3.1.182"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-acid biosynthesis; L-isoleucine biosynthesis; 2-oxobutanoate from pyruvate: step 1/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the alpha-IPM synthase/homocitrate synthase family.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.182" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67224.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898906.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0420"/>
    <dbReference type="EnsemblBacteria" id="SHG67224">
        <property type="protein sequence ID" value="SHG67224"/>
        <property type="gene ID" value="SAMN05444003_0420"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00047">
        <property type="reaction ID" value="UER00066"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043714">
        <property type="term" value="F:(R)-citramalate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003852">
        <property type="term" value="F:2-isopropylmalate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009098">
        <property type="term" value="P:leucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013709">
        <property type="entry name" value="2-isopropylmalate_synth_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002034">
        <property type="entry name" value="AIPM/Hcit_synth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005675">
        <property type="entry name" value="Citramal_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036230">
        <property type="entry name" value="LeuA_allosteric_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000891">
        <property type="entry name" value="PYR_CT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43538">
        <property type="entry name" value="PTHR43538"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00682">
        <property type="entry name" value="HMGL-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08502">
        <property type="entry name" value="LeuA_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00917">
        <property type="entry name" value="LeuA_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110921">
        <property type="entry name" value="SSF110921"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00977">
        <property type="entry name" value="citramal_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00815">
        <property type="entry name" value="AIPM_HOMOCIT_SYNTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50991">
        <property type="entry name" value="PYR_CT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="8" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="6" id="KW-0412">Isoleucine biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pyruvate carboxyltransferase" evidence="10">
        <location>
            <begin position="6"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004743"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022325"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022624"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003523"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG67224.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="539" mass="58254" checksum="D2A15CD5C82182FC" modified="2017-03-15" version="1">MTKGRLYLYDTTLRDGQQTQGVQFSTDEKIQISTLLDDLGLDHIEGGWPGANPTDSDFFNAAPKTRATMTAFGMTKRSGRSTENDDVLAAVMNAGTPAVCLVGKSSAFHVTDALGITLAENSENLRSSFAHLVAQGREAIFDAEHFFDGYKDNPDYALEAIHTAYEAGCRWIVLCDTNGGTMPHEVTEIVTAVINSGIPGDRLGIHTHNDTENAVANTLAAVLAGARQIQGTLNGLGERCGNANLTTLIPILKLKEPFASQFETGVSDAALKRLLPASRMLDDILNRVPAKQAAFVGASAFAHKAGLHASAILKNPTTYEHVDPAAVGNTRIVPMSNQAGQSNLRERLAKAGLAVEKGDPALARILDRIKAKEAEGYSYDTAQASFELLARKELGQLPKFFEVKRYRVTVERRKNKKNETVSLSEAVVAVKMDGQRKLNVSDSLGEDGKDQGPVNALGRALSKDLGKYQSYIEDLKLVDYKVRITNGGIEAVTRVIIDSEDGQGNRWSTVGVSANIVDASFEALVDAINWKLIRDRAPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LWH7</accession>
    <name>A0A1M5LWH7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0510</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69270.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900375.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0510"/>
    <dbReference type="EnsemblBacteria" id="SHG69270">
        <property type="protein sequence ID" value="SHG69270"/>
        <property type="gene ID" value="SAMN05444003_0510"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007481">
        <property type="entry name" value="SspB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036760">
        <property type="entry name" value="SspB-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04386">
        <property type="entry name" value="SspB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101738">
        <property type="entry name" value="SSF101738"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="114"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="115"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG69270.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="156" mass="18171" checksum="C16A826D7841B166" modified="2017-03-15" version="1">MSRRIDYGNLMHRAMRSLIQNVLTDIQQNGLPGEHHFFITFDTLHPDVELADWLSDRYPGEMTIVIQHWFDNLDVTDEGFSITLNFGENPEPMYIPYDAIKTFVDPSVEFGLRFETQEEDEDEEDEVEEAPMEEMAEEPEAPPTEAEVVSLDQFRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LY42</accession>
    <name>A0A1M5LY42_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Agmatinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0523</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the arginase family. Agmatinase subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69549.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899051.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0523"/>
    <dbReference type="EnsemblBacteria" id="SHG69549">
        <property type="protein sequence ID" value="SHG69549"/>
        <property type="gene ID" value="SAMN05444003_0523"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016813">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901564">
        <property type="term" value="P:organonitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005925">
        <property type="entry name" value="Agmatinase-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006035">
        <property type="entry name" value="Ureohydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023696">
        <property type="entry name" value="Ureohydrolase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020855">
        <property type="entry name" value="Ureohydrolase_Mn_BS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11358">
        <property type="entry name" value="PTHR11358"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00491">
        <property type="entry name" value="Arginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036979">
        <property type="entry name" value="Arginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52768">
        <property type="entry name" value="SSF52768"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01230">
        <property type="entry name" value="agmatinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01053">
        <property type="entry name" value="ARGINASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51409">
        <property type="entry name" value="ARGINASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003684"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG69549.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="322" mass="35078" checksum="61170C989F1E131A" modified="2017-03-15" version="1">MSLAMSRSAIDRAFADDEKKGLAFEVAFGGATSFLRRNYTKDLTGFDLAVTGVPFDQAVTHRPGTRFGPRAIREASTLQTFDPPIYWDGFDPMSEFAIADYGDLAYDYADISGVPDLLQAHIKGILDQGCQAITLGGDHFITLPILRAYAEKYGPMSVIQFDAHSDLWPDDDMSRIDHGTMMYKAVKLGIVDVTRSVQIGIRTVCDDYLGMPYIDARTVHEKGCDWVVDEAKRLVGDAPTYITFDIDALDPAYAPGTGTPVWGGLHSWQAAAMLRDLAGINMVGGDCVEVSPPYDTTGATAIAGAHVAMELCCLNLWNKRAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M0Z9</accession>
    <name>A0A1M5M0Z9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Periplasmic chaperone for outer membrane proteins Skp</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_0588</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the Skp family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70951.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0588"/>
    <dbReference type="EnsemblBacteria" id="SHG70951">
        <property type="protein sequence ID" value="SHG70951"/>
        <property type="gene ID" value="SAMN05444003_0588"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.910.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005632">
        <property type="entry name" value="Chaperone_Skp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024930">
        <property type="entry name" value="Skp_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03938">
        <property type="entry name" value="OmpH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00935">
        <property type="entry name" value="OmpH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111384">
        <property type="entry name" value="SSF111384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012702850" evidence="5">
        <location>
            <begin position="21"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="173"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="50"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="178"/>
            <end position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG70951.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="205" mass="22987" checksum="FE2CDB47E7B90D4D" modified="2017-03-15" version="1">MRLLWAAFFLALSLSGGPLAAQTTEATPEGIFVINADRLFAESEIGQSIREDFQVRRLELQAENERIIEELVAEEQDLAARRPDMDVEEFRLEAEAFDRKAIEIRAARDAKERSISEAAEEAQARFNEQVREVAGQVMIERGGKVILDSRSVYLALRSIDITDAVIDRLDGLAEQQTEEQEPIENVAPSNQEPDETAPVEETVSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M2T1</accession>
    <name>A0A1M5M2T1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Two-component system, NtrC family, nitrogen regulation response regulator GlnG</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_0611</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG71548.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899163.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0611"/>
    <dbReference type="EnsemblBacteria" id="SHG71548">
        <property type="protein sequence ID" value="SHG71548"/>
        <property type="gene ID" value="SAMN05444003_0611"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002197">
        <property type="entry name" value="HTH_Fis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002078">
        <property type="entry name" value="Sigma_54_int"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025662">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025944">
        <property type="entry name" value="Sigma_54_int_dom_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02954">
        <property type="entry name" value="HTH_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14532">
        <property type="entry name" value="Sigma54_activ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01590">
        <property type="entry name" value="HTHFIS"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00675">
        <property type="entry name" value="SIGMA54_INTERACT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00688">
        <property type="entry name" value="SIGMA54_INTERACT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50045">
        <property type="entry name" value="SIGMA54_INTERACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="4" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="3" id="KW-0902">Two-component regulatory system</keyword>
    <feature type="domain" description="Response regulatory" evidence="8">
        <location>
            <begin position="4"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma-54 factor interaction" evidence="7">
        <location>
            <begin position="142"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="6">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG71548.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="456" mass="49965" checksum="D7EC862CAA056C4B" modified="2017-03-15" version="1">MDGTILVADDDRTIRTVLTQALTRAGCKVHATSSLVTLMRWVEEGKGDLVISDVMMPDGNGLEQIPQIAEARPGLPVIVISAQNTIMTAIQAAEADAYDYLPKPFDLPDLMKRAARALEVKRRSQNVRAVDPDKDESGDLPLVGRTPAMQALYRLVARVMNTQLSVLITGESGTGKSLIAKAIHDFSDRRNLPFVIVGASDLETMDGPHAVLAKAKGGSILFDEVGDLDETAQARIVRMLDSFGDTAPRVMATSQADLAVLMEDGKFREDLFYRLSGVTIAVPSLRERVDDIPLLADHFLAKAEREGAPMKSLSEDATEMVRAYSWPGNVRQLENSIRRLVFTSTESEITQAEVESVLGNQPAMETLRSGGENDKLSASVAKHLQRYFDLHGGVLPPPGLYNRILKEIEVPLIEISLDATGGNQAKCADLLGINRNTLRKKITDLDIRVTRRRKLM</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M376</accession>
    <name>A0A1M5M376_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">GTPase HflX</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">GTP-binding protein HflX</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">hflX</name>
        <name evidence="9" type="ORF">SAMN05444003_0617</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="5">Monomer. Associates with the 50S ribosomal subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="5">May associate with membranes.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG71711.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899170.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0617"/>
    <dbReference type="EnsemblBacteria" id="SHG71711">
        <property type="protein sequence ID" value="SHG71711"/>
        <property type="gene ID" value="SAMN05444003_0617"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01878">
        <property type="entry name" value="HflX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11060">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00900">
        <property type="entry name" value="GTPase_HflX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030394">
        <property type="entry name" value="G_HFLX_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032305">
        <property type="entry name" value="GTP-bd_M"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016496">
        <property type="entry name" value="GTPase_HflX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025121">
        <property type="entry name" value="GTPase_HflX_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042108">
        <property type="entry name" value="GTPase_HflX_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045498">
        <property type="entry name" value="HflX_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10229">
        <property type="entry name" value="PTHR10229"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16360">
        <property type="entry name" value="GTP-bdg_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13167">
        <property type="entry name" value="GTP-bdg_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19275">
        <property type="entry name" value="HflX_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006809">
        <property type="entry name" value="GTP-binding_hflX_prd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00326">
        <property type="entry name" value="GTP1OBG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03156">
        <property type="entry name" value="GTP_HflX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51705">
        <property type="entry name" value="G_HFLX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 5 6" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="3 7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="1 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 5 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hflx-type G" evidence="8">
        <location>
            <begin position="204"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="210"/>
            <end position="217"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="217"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="235"/>
            <end position="239"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="237"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="257"/>
            <end position="260"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="324"/>
            <end position="327"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="351"/>
            <end position="353"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR006809-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR006809-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG71711.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="425" mass="47291" checksum="C39751394B6EA4FE" modified="2017-03-15" version="1">MLEHDKPVTRAWVLHPDIKIDSARRDASSGLEEAVSLAVALPDLEVFGSDVVRLPKVHPGMLFGSGKIEELAAVFKAHEIELVLVDGPVTPVQQRNLEKAWKVKLLDRTGLILEIFGDRARTAEGVLQVEMAALSYQRTRLVRAWTHLERQRGGLGFVGGPGETQIEADRRAIDEQLGRLRKQLAKVVKTRELHRSARAKVPFPIVALVGYTNAGKSTLFNRVTGSEVFAKDMLFATLDPTMRRIELPAGDEVILSDTVGFISDLPTELVAAFRATLEEVLDADLIVHVRDISHPHTEEQAQDVETILQGLGISEDAPKLEVWNKLDQLNEDDRQSAVTQAQRRQDLFAVSALTGEGVDDLLQVIAETVKDPRTEETLSLPFSEGKRRAWLFDAGVVEKENQTEDGFELSVLWTETQKARFHKLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M9Y5</accession>
    <name>A0A1M5M9Y5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Heme A synthase</fullName>
            <shortName evidence="7">HAS</shortName>
            <ecNumber evidence="7">1.17.99.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Cytochrome aa3-controlling protein</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">ctaA</name>
        <name evidence="8" type="ORF">SAMN05444003_0719</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the conversion of heme O to heme A by two successive hydroxylations of the methyl group at C8. The first hydroxylation forms heme I, the second hydroxylation results in an unstable dihydroxymethyl group, which spontaneously dehydrates, resulting in the formyl group of heme A.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>2 A + Fe(II)-heme o + H2O = 2 AH2 + Fe(II)-heme a</text>
            <dbReference type="Rhea" id="RHEA:63388"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:60530"/>
            <dbReference type="ChEBI" id="CHEBI:61715"/>
            <dbReference type="EC" id="1.17.99.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>heme b</name>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="7">Porphyrin-containing compound metabolism; heme A biosynthesis; heme A from heme O: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Interacts with CtaB.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the COX15/CtaA family. Type 2 subfamily.</text>
    </comment>
    <dbReference type="EC" id="1.17.99.9" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74078.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899357.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0719"/>
    <dbReference type="EnsemblBacteria" id="SHG74078">
        <property type="protein sequence ID" value="SHG74078"/>
        <property type="gene ID" value="SAMN05444003_0719"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00269">
        <property type="reaction ID" value="UER00713"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016653">
        <property type="term" value="F:oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006784">
        <property type="term" value="P:heme A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01665">
        <property type="entry name" value="HemeA_synth_type2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003780">
        <property type="entry name" value="COX15/CtaA_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023754">
        <property type="entry name" value="HemeA_Synthase_type2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23289">
        <property type="entry name" value="PTHR23289"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02628">
        <property type="entry name" value="COX15-CtaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 7" id="KW-0350">Heme biosynthesis</keyword>
    <keyword evidence="7" id="KW-0408">Iron</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="36"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="122"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="151"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="181"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="225"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="288"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="320"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="348"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="7">
        <location>
            <position position="290"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="7">
        <location>
            <position position="350"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01665"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG74078.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="380" mass="42581" checksum="2A04AD8950CD44FB" modified="2017-03-15" version="1">MADKPRSIFEDVGTTEKQVATPGAIDRGGQGARGAIRAWLFVLFGLVAVMIVVGGLTRLTDSGLSITEWKPVTGALPPMSAEAWDLEFEKYKQIPEYTEQNIGMTMEEFKVIYWWEWGHRQLGRVIGLVWAIGFAYFAIRRQIPTGWTQKLLFIGALGGLQGAIGWWMVSSGLKPGMLDVASYRLAIHLGLAFVIFGFIAWYIMQLSRREADLLQARRSGDAKMWSMSTGLMHFAFLQILLGALVAGIDAGRAYPDWPLMAGGFFPPEPFGLTPVWRNFFEDAGLVQFMHRMAGYLLFIYAVVVWRMASKSANTSIRFSFNLVLAMMFLQMVIGIVTVMYYAPWNIAIVHQIGAIVLWVLILRARFMSRYPIPEKIAGAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MB61</accession>
    <name>A0A1M5MB61_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0737</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74537.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0737"/>
    <dbReference type="EnsemblBacteria" id="SHG74537">
        <property type="protein sequence ID" value="SHG74537"/>
        <property type="gene ID" value="SAMN05444003_0737"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG74537.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="397" mass="43647" checksum="9627DD7ECBDF898E" modified="2017-03-15" version="1">MHSSMSLIDDLELIERTILPTDPSFNAVDKAELNSQILEARMFAVANQRDDFLLSVMRLMALPRNGHTRLIPNQSISALPLRFATVGNSVRLMQAPPCFYPAIGGELISINGVGIDDLERLSTPFLAGMSQRKRVIRPILFVWPSALVRLGVNLRGDTLEYQMRDVKGMCFSISLDSSKAVCSTDFYPSNEHGKTDASWSPCSLMKIKSFDPVGLLIVLPSFFDPIGTDLADAISEAAGCIASSPETHLVIDIRGNTGGNFLQTLPLIDAIVAGAKWRQVRVLVDKFTFSAAIVFVAILKHRLGARLKLIGEEMGDGLKFHAEGSTLRLPFSGAAVRYSTALHDWEEGRVDHTTPPEIANVIVPVGTLEIDRIWTENSDDDEARDSLCRDILRDLNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MEY9</accession>
    <name>A0A1M5MEY9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NADPH2:quinone reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0792</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75732.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900400.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG75732">
        <property type="protein sequence ID" value="SHG75732"/>
        <property type="gene ID" value="SAMN05444003_0792"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PKS_ER" evidence="1">
        <location>
            <begin position="11"/>
            <end position="327"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG75732.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="329" mass="34118" checksum="0A3A4851AC1F623C" modified="2017-03-15" version="1">MRAVTYSQFGSAAEVLNLSALSKPSPAEGEVLVRLSISAVNPSDVKARAGGRPGVLKPPFPTIIPHSDGAGVIEAVGEGVDKSRIGERVWIWNGQWKRAFGTAADYIALPSEQAVPLPQETSFEEGAILGIPALTATHAVLGGGSVDGKTLLVSGGAGTVGYLAVQAAKASGAQVIATARGSKGLDAAKGAGADFVFDYSDPDLATKILDATNGDLVDRIVEVEFGKNAQTNASVIAEGGTIAAFGSAKETEPVLPFYPLMFKAVTLDLVLVYLLNSAERLAAINNLTNLLEQKALKFRIAETLPLEDCAKAHDLVADGAREGSVLLRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MKC5</accession>
    <name>A0A1M5MKC5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Maltose-binding protein /trehalose-binding protein /sucrose-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0853</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial solute-binding protein 1 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899553.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0853"/>
    <dbReference type="EnsemblBacteria" id="SHG77223">
        <property type="protein sequence ID" value="SHG77223"/>
        <property type="gene ID" value="SAMN05444003_0853"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006059">
        <property type="entry name" value="SBP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13416">
        <property type="entry name" value="SBP_bac_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0574">Periplasm</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009912351" evidence="4">
        <location>
            <begin position="22"/>
            <end position="452"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG77223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="452" mass="48072" checksum="3E971989660A6C10" modified="2017-03-15" version="1">MKKTLYASAASVALLASAAHAGGHLVFAPGEGDFSWDEYEAYAAGAPDLSGQTVTVFGPWLSPEDDIFRSAIAYFVDATGAEVTYTGSDGFEQQIVIDAEAGSPPNIAVFPQPGLAANMAAQGLLTPLGGDMASWVSDNYAAGSSWVDLGTYADANGDDQFYGFFYNVNVKSLVWYVPENFEDAGYDIPETMEDLIALSEQIIADGDTPWCIGLGSGPATGWPATDWVEDIMLRTQSPADYDAWVSNELKFNDPKVIEALNTFGMFAKNDDMVAGGAGAVGSTDFRDSPAGLFTSPPQCYMHKQASFIPAFMPEDVVIGEDADFFYFPSFAEKDLGNPVLGGGTLMAVTDPSDATMAFMEFLQQPIAHEIMMAQTGFLTPHSGVNLDAYKDATLRGQGEILQNATTFRFDGSDLMPGAIGAGTFWTGMVDFVGGASAEDVADAIQNSWDALN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MNW4</accession>
    <name>A0A1M5MNW4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0929</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78961.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899656.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG78961">
        <property type="protein sequence ID" value="SHG78961"/>
        <property type="gene ID" value="SAMN05444003_0929"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012702865" evidence="1">
        <location>
            <begin position="19"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG78961.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="112" mass="12295" checksum="4CA07F90BCB70A32" modified="2017-03-15" version="1">MFKALIVAAGLVPTLAIAEEWTPLFEDAAIQEALADRTVRYDALTFQIFGAAGDTQYITERASEGRWAARGGQYCSVWPPSDVWTCYDFAVSGNSVRFIGTDRSVSVGTYEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MQN8</accession>
    <name>A0A1M5MQN8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0952</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79392.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899699.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0952"/>
    <dbReference type="EnsemblBacteria" id="SHG79392">
        <property type="protein sequence ID" value="SHG79392"/>
        <property type="gene ID" value="SAMN05444003_0952"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013110279" evidence="1">
        <location>
            <begin position="26"/>
            <end position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG79392.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="199" mass="21344" checksum="5DA3B3661D25EF21" modified="2017-03-15" version="1">MKTLAKALCFTALAACSTSFETDFAQPLSPDVTRGWNVVGVSVSVPDELTVSEENSFVPVADIVWHGDPRGDRKAQVADIVREGVARGASELNGPRPVNLNVQVSEFHGVTPIAREKAPSAVHNITYFIQATDARTGEVISPPEQIKADLEALTGFQAIEATIQGRTQKVRVTEHIEAVTEGWLGIGPDPRGTFEGLGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MTU0</accession>
    <name>A0A1M5MTU0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Endo-1,3-1,4-beta-glycanase ExoK</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1017</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyl hydrolase 16 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80686.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1017"/>
    <dbReference type="EnsemblBacteria" id="SHG80686">
        <property type="protein sequence ID" value="SHG80686"/>
        <property type="gene ID" value="SAMN05444003_1017"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044791">
        <property type="entry name" value="Beta-glucanase/XTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008264">
        <property type="entry name" value="Beta_glucanase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000757">
        <property type="entry name" value="GH16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008263">
        <property type="entry name" value="GH16_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31062">
        <property type="entry name" value="PTHR31062"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00722">
        <property type="entry name" value="Glyco_hydro_16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00737">
        <property type="entry name" value="GLHYDRLASE16"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="SSF49899"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01034">
        <property type="entry name" value="GH16_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51762">
        <property type="entry name" value="GH16_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GH16" evidence="4">
        <location>
            <begin position="13"/>
            <end position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006865"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51762"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG80686.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="240" mass="26735" checksum="CC4E385ED9E819A4" modified="2017-03-15" version="1">MRAGLIASVLLAYSLQAEPLLDRFETLDRNLWHVAEYDFIHPAFDTDWRSSQAVADNGLRLKLSPHDGLNRFVGASIRSLETHHYGIYRSRFRAGKGDDVVTGFFTYTGPHYGTRHDEIDIEILGKDPTRLHVAWFVDGELTNHFIPLGFDASESVNDFAFEWLPEGIRWYVNDALVFEASANDGPLPSIPSHLFANIWAVDPSIAVWPGVVEPATTTSAYFDSISFEPTATVSTSDASS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MUD3</accession>
    <name>A0A1M5MUD3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Glutathione S-transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1020</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GST superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899761.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1020"/>
    <dbReference type="EnsemblBacteria" id="SHG80762">
        <property type="protein sequence ID" value="SHG80762"/>
        <property type="gene ID" value="SAMN05444003_1020"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006749">
        <property type="term" value="P:glutathione metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010987">
        <property type="entry name" value="Glutathione-S-Trfase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036282">
        <property type="entry name" value="Glutathione-S-Trfase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004045">
        <property type="entry name" value="Glutathione_S-Trfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004046">
        <property type="entry name" value="GST_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00043">
        <property type="entry name" value="GST_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02798">
        <property type="entry name" value="GST_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47616">
        <property type="entry name" value="SSF47616"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50405">
        <property type="entry name" value="GST_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50404">
        <property type="entry name" value="GST_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GST N-terminal" evidence="2">
        <location>
            <begin position="1"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="domain" description="GST C-terminal" evidence="3">
        <location>
            <begin position="85"/>
            <end position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU003494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG80762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="217" mass="24272" checksum="6E1BCE712C00FE23" modified="2017-03-15" version="1">MIRLHHCHQTRSMRSLWLLEELGIGFDLICYGFDGAIKTPEYLTLNPAGRVPTLEIDGDVLFESGAIAEVLCDRFSPDGLGRSVGNPERAQWLNWLHYAETISQHTAALTQQHIMLFEDHMRSPVIMKIEAKRLAKTFAAVDATLKGQDYLLKDGFSAADIGVGQAVYMGQHFVALADFPNLSVWFDRVTARPAFQRSLTDGAPLYAKDFYPPWTAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MV58</accession>
    <name>A0A1M5MV58_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Peptide/nickel transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_1043</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81230.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899782.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1043"/>
    <dbReference type="EnsemblBacteria" id="SHG81230">
        <property type="protein sequence ID" value="SHG81230"/>
        <property type="gene ID" value="SAMN05444003_1043"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045621">
        <property type="entry name" value="BPD_transp_1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19300">
        <property type="entry name" value="BPD_transp_1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="116"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="151"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="258"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="302"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="7">
        <location>
            <begin position="112"/>
            <end position="321"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG81230.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="335" mass="37717" checksum="B368B34A2D162ADB" modified="2017-03-15" version="1">MLTFTIRRLLLSIPTLLFIALVIFLLLELAPGDPMGQMPLTIPDEVKQKMREALGLGEPWYTRFSLWLYQFFIVEPQYWIDGIFGTNFADGAQRIISFQSRSPVFDTIAERIPQTLWVVGMSYIVGVLIALPIGIISAYKQYSVFDQCGTFVTMIGFSIPPFFTGPLLIFIFSVQLGWLPSIYDTTLVVDDWESFKQQFKQMIMPVMVLALQTTAQIARYMRASMLDNLGQDYVRTARAKGMKESVVVMKHVLRNSMIPVVTVIALGIPAIFGGAIITEQVFKVNGIGQLLIIAIQGSDIPMVMTITFLFAVLIVLFNLIADVLYGVLDPRIRYD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MVA4</accession>
    <name>A0A1M5MVA4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Glycosyltransferase family 92</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1035</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81062.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899775.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1035"/>
    <dbReference type="EnsemblBacteria" id="SHG81062">
        <property type="protein sequence ID" value="SHG81062"/>
        <property type="gene ID" value="SAMN05444003_1035"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008166">
        <property type="entry name" value="Glyco_transf_92"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01697">
        <property type="entry name" value="Glyco_transf_92"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG81062.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="292" mass="32634" checksum="092CA9D201EA5EDE" modified="2017-03-15" version="1">MFGPRTISKLSITSPSPVADRAGMAICLIVRNEERHIGEWADFHLKAGVEHFVVYDNGCTDGTVDVLKQRLAPDQLTLMPWDQRLSDGRSGAEIHNQVLAYAHALRNFGGRFRWMAFIDVDEFLIPTEATSLGEALAPLENAKHISLPWHMFGRNGHETAPEGGVLTNYLNRARDPLASSHALNWKCIVDPCHVTGVRVHGFDIDGRAEGTNDVGKLAKHTGRADRSFYSREAIQLNHYYTRSNAELQAKINRGSNKTVEAQRHIKRVMRIVDAIEADTVEDSTALDFLNRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MZK0</accession>
    <name>A0A1M5MZK0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1110</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82701.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1110"/>
    <dbReference type="EnsemblBacteria" id="SHG82701">
        <property type="protein sequence ID" value="SHG82701"/>
        <property type="gene ID" value="SAMN05444003_1110"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012454722" evidence="1">
        <location>
            <begin position="22"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG82701.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="131" mass="14539" checksum="AE8217BBFB0D2BDB" modified="2017-03-15" version="1">MAKLTMRILISLLLFATTAAAQSPMTAEEFDAYVTGKVLTFGSPGNPNYGVEHYLPQRRVLWSAFNGECIEGRWYEADQNICFAYEGTDEHHCWTVFKTPDGIQATNADSGQIIFEANEDPSALVCGNFFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N4K6</accession>
    <name>A0A1M5N4K6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1181</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84385.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG84385">
        <property type="protein sequence ID" value="SHG84385"/>
        <property type="gene ID" value="SAMN05444003_1181"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="54"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="81"/>
            <end position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG84385.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="112" mass="12144" checksum="7408EF55BE6CF346" modified="2017-03-15" version="1">MGSFGTLKMGGQFVILSGIMHFVAAIFGDTLLMASIGVLYLLMGMGLTRGMRWLGYFAFLFMIFGSMLAYGFLYATPVPQWATITIIVLDLLAALNLFIAIWKAPVPKAPAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N8B1</accession>
    <name>A0A1M5N8B1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 4">Guanine deaminase</fullName>
            <shortName evidence="4">Guanase</shortName>
            <ecNumber evidence="3 4">3.5.4.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Guanine aminohydrolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_1236</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>guanine + H(+) + H2O = NH4(+) + xanthine</text>
            <dbReference type="Rhea" id="RHEA:14665"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16235"/>
            <dbReference type="ChEBI" id="CHEBI:17712"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="EC" id="3.5.4.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="4">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 4">Purine metabolism; guanine degradation; xanthine from guanine: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.</text>
    </comment>
    <dbReference type="EC" id="3.5.4.3" evidence="3 4"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85682.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899946.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1236"/>
    <dbReference type="EnsemblBacteria" id="SHG85682">
        <property type="protein sequence ID" value="SHG85682"/>
        <property type="gene ID" value="SAMN05444003_1236"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00603">
        <property type="reaction ID" value="UER00660"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008892">
        <property type="term" value="F:guanine deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006147">
        <property type="term" value="P:guanine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014311">
        <property type="entry name" value="Guanine_deaminase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011059">
        <property type="entry name" value="Metal-dep_hydrolase_composite"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01979">
        <property type="entry name" value="Amidohydro_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51338">
        <property type="entry name" value="SSF51338"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02967">
        <property type="entry name" value="guan_deamin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Amidohydro-rel" evidence="5">
        <location>
            <begin position="67"/>
            <end position="428"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006745"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU366009"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG85682.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="439" mass="47832" checksum="8A81F8F4BF78883F" modified="2017-03-15" version="1">MTKHLLLGQTLTFTSDPFENDWSDVAHINTSGGVLVEDGQIVGVDDGAALRAQHPDAIVTDYGQDLISAGFVDAHMHYPQTGIIASWGKQLIDWLNTYTFPEESRFGDRAFADDVAGRTLDLALAHGTTTLTSYCTIHPESVDAFFEAAAKRNMAVVAGKTCMDRNAPDTLKDTSQSAYDDSKRLLKKWDGTGRARYAITPRFSPTSTPEQLQALGALWAENPNVLMQTHMSEQKPEIAWVKELFPDARDYLDTYERFGLLGENGLYGHCIHLEQREIDRFAEVGAAVVHCPTSNTFIGSGLFDIAGLKARGIRTGLATDTGGGSSFSMLRTMAAAYEIGQLRGNVLHPAQLLWLATEGSASALKAQGQIGHLGVGASADITVLNLKSTEVIEQRANRAEHAWDAIFPTIMMGDDRAIREVWVAGEMVSWRAPSPVDFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NAS9</accession>
    <name>A0A1M5NAS9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized conserved protein, DUF849 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1283</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86562.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900448.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1283"/>
    <dbReference type="EnsemblBacteria" id="SHG86562">
        <property type="protein sequence ID" value="SHG86562"/>
        <property type="gene ID" value="SAMN05444003_1283"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019475">
        <property type="term" value="P:L-lysine catabolic process to acetate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008567">
        <property type="entry name" value="KCE_family"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37418">
        <property type="entry name" value="PTHR37418"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05853">
        <property type="entry name" value="BKACE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG86562.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="303" mass="32229" checksum="52BAD6A04896A85A" modified="2017-03-15" version="1">MPLEMNREVFITCAVTGSGSTQDRSPHVPRSPKQIADSAIDAAKAGAAVVHCHVRDPETGTPARDLALYREVTDRIRDAEVDVVLNLTAGMGGDIVFGSSEAPFPTAEGTDMIGATERVTHVAECLPEICTLDCGTMNFAEADYVMTNTPGMLVAMGTMMTELGVKPEIEAFDTGHLWYAKQLVKEGVLDSPALVQLCMGVPWGAPDDLNTFMAMVNNVPHDWTFSAFGLGRSQMPYVAASVLAGGNVRVGLEDNLMLDKGVLATNAQLVERAAGIIENLGARVIGPEEVRTKLGLTKRAPSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NB99</accession>
    <name>A0A1M5NB99_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Ca2+-binding protein, EF-hand superfamily</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1277</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86459.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899981.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1277"/>
    <dbReference type="EnsemblBacteria" id="SHG86459">
        <property type="protein sequence ID" value="SHG86459"/>
        <property type="gene ID" value="SAMN05444003_1277"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00051">
        <property type="entry name" value="EFh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011992">
        <property type="entry name" value="EF-hand-dom_pair"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018247">
        <property type="entry name" value="EF_Hand_1_Ca_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002048">
        <property type="entry name" value="EF_hand_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13202">
        <property type="entry name" value="EF-hand_5"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13499">
        <property type="entry name" value="EF-hand_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00054">
        <property type="entry name" value="EFh"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47473">
        <property type="entry name" value="SSF47473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00018">
        <property type="entry name" value="EF_HAND_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50222">
        <property type="entry name" value="EF_HAND_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012544940" evidence="2">
        <location>
            <begin position="24"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="domain" description="EF-hand" evidence="3">
        <location>
            <begin position="79"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="domain" description="EF-hand" evidence="3">
        <location>
            <begin position="116"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="118"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="133"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50222"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG86459.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="161" mass="17252" checksum="E159D49FFB674054" modified="2017-03-15" version="1">MKTTVLMAGITAALVMTAADVQAKPGGDRPDFSTLDANGDGQITMEELQAQGQARFAAADIDGNGSLSVEELTAAAEGRRANRIDRMMERLDTNGDGELSQDELAQMRERRGGAMAERIFERIDENDDGAISEEEFETAKERGRGGRHGGKSDRGSDSDEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5ND61</accession>
    <name>A0A1M5ND61_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">tRNA(Ile)-lysidine synthase</fullName>
            <ecNumber evidence="6">6.3.4.19</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">tRNA(Ile)-2-lysyl-cytidine synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">tRNA(Ile)-lysidine synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">tilS</name>
        <name evidence="8" type="ORF">SAMN05444003_1340</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>ATP + cytidine(34) in tRNA(Ile2) + L-lysine = AMP + diphosphate + H(+) + lysidine(34) in tRNA(Ile2)</text>
            <dbReference type="Rhea" id="RHEA:43744"/>
            <dbReference type="Rhea" id="RHEA-COMP:10625"/>
            <dbReference type="Rhea" id="RHEA-COMP:10670"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:32551"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:82748"/>
            <dbReference type="ChEBI" id="CHEBI:83665"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.3.4.19"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="6">The N-terminal region contains the highly conserved SGGXDS motif, predicted to be a P-loop motif involved in ATP binding.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the tRNA(Ile)-lysidine synthase family.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.19" evidence="6"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87448.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1340"/>
    <dbReference type="EnsemblBacteria" id="SHG87448">
        <property type="protein sequence ID" value="SHG87448"/>
        <property type="gene ID" value="SAMN05444003_1340"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016879">
        <property type="term" value="F:ligase activity, forming carbon-nitrogen bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006400">
        <property type="term" value="P:tRNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01992">
        <property type="entry name" value="PP-ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01161">
        <property type="entry name" value="tRNA_Ile_lys_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011063">
        <property type="entry name" value="TilS/TtcA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012094">
        <property type="entry name" value="tRNA_Ile_lys_synt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012795">
        <property type="entry name" value="tRNA_Ile_lys_synt_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43033">
        <property type="entry name" value="PTHR43033"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01171">
        <property type="entry name" value="ATP_bind_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02432">
        <property type="entry name" value="lysidine_TilS_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 6" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="ATP_bind_3" evidence="7">
        <location>
            <begin position="30"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="35"/>
            <end position="40"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG87448.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="421" mass="46776" checksum="DD4FE6A918EDC01F" modified="2017-03-15" version="1">MQLDQTDPVVQQVKKNLSEIFGDRFDQQHFVVAVSGGGDSMAMLYAVAALVPMGWLQVVSVNHHFRAEAADELALVERACQGLGVAWQAGHWEWDGKGNLQAAAREGRWAILKAIAQANRSSAVLIGHTEDDQIENFFLRLARGSGVDGLAGIQLSSHRDGIQIVRPLLSIGRQELRAWLTRNGIEWADDPTNEDSAYGRIRARQMMAQLKDLGLTRKRVLQTVEHMRSASEALDTATRQFVHDRCRTECGDVIIGLSEEDFDNREIFLRAATKAIQWVGGQVYKPRYESLVSAIDLVLNGKRNTLSGCVLSRENNRLRVGRELSAVENTLKCTGDGPFIWDDRWIVETSKPIDHGEIRALGEDGLAHCLNWRQIGAPRHTLLTTPSVWANDTLIAAPIAGYENGWTAQIAADFADWLVTH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NF98</accession>
    <name>A0A1M5NF98_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1381</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88191.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900073.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1381"/>
    <dbReference type="EnsemblBacteria" id="SHG88191">
        <property type="protein sequence ID" value="SHG88191"/>
        <property type="gene ID" value="SAMN05444003_1381"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG88191.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="244" mass="25699" checksum="3BF1833805F3EFE6" modified="2017-03-15" version="1">MIDLTGKAALVTGGRSGIGAAIAEALEEAGATVLTAQRGVDRARDYIEADLSDPDAPNAIITEATRRFGRLDILVNNAGVMYEGTLLEMDAETWAKTIQVNLTAPAMLAKAALPHLIESKGCILNIGSIEGLGSNPRHPAYCASKGGLHALTRAVAVDHGPDGVRCNAIAPGWIDTDLNTAFIESLGDPDQFRKDIGHIHPVGRTGTPQEVAALARWLVSEEASFVTGQIWTIDGGRMSKISLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NIA9</accession>
    <name>A0A1M5NIA9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Probable branched-chain-amino-acid aminotransferase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_1438</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Acts on leucine, isoleucine and valine.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 7">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3 6">Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89314.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900122.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1438"/>
    <dbReference type="EnsemblBacteria" id="SHG89314">
        <property type="protein sequence ID" value="SHG89314"/>
        <property type="gene ID" value="SAMN05444003_1438"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001544">
        <property type="entry name" value="Aminotrans_IV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018300">
        <property type="entry name" value="Aminotrans_IV_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036038">
        <property type="entry name" value="Aminotransferase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043132">
        <property type="entry name" value="BCAT-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043131">
        <property type="entry name" value="BCAT-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01063">
        <property type="entry name" value="Aminotran_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56752">
        <property type="entry name" value="SSF56752"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00770">
        <property type="entry name" value="AA_TRANSFER_CLASS_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="5 7" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00014472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU004516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG89314.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="289" mass="31452" checksum="1CDA7D4964E25E3D" modified="2017-03-15" version="1">MAVGTDIKTYFEGQWHTGDVPIMRAADHGSWLGTTVFDGARFVNGRAPDLQSHCERVNRSAEALFIKPSVSTENMIKLIREGLQSYGPETAVYIRPMYWAIDGGPTGVLTKTGETGFAVCLEAIPMAPETATTTLTRTQFRRPVLEDAVVGAKAGCLYPNNARMLAEAQSKGFGNALVADAMGNVAETATANVFAVKDGEVFTPIANGTFLAGITRARHIENLRADGVTVHETVMSFQDFHDADEVFTSGNMMKVTPVSAFDDTNYQVGPITKRVREMYWDWAATETPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NM29</accession>
    <name>A0A1M5NM29_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">GST-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1494</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GST superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90591.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900171.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1494"/>
    <dbReference type="EnsemblBacteria" id="SHG90591">
        <property type="protein sequence ID" value="SHG90591"/>
        <property type="gene ID" value="SAMN05444003_1494"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006749">
        <property type="term" value="P:glutathione metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010987">
        <property type="entry name" value="Glutathione-S-Trfase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036282">
        <property type="entry name" value="Glutathione-S-Trfase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040079">
        <property type="entry name" value="Glutathione_S-Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004045">
        <property type="entry name" value="Glutathione_S-Trfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004046">
        <property type="entry name" value="GST_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00043">
        <property type="entry name" value="GST_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02798">
        <property type="entry name" value="GST_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00019">
        <property type="entry name" value="Glutathione_Transferase_(cytos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47616">
        <property type="entry name" value="SSF47616"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50405">
        <property type="entry name" value="GST_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50404">
        <property type="entry name" value="GST_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GST N-terminal" evidence="2">
        <location>
            <begin position="3"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="domain" description="GST C-terminal" evidence="3">
        <location>
            <begin position="89"/>
            <end position="214"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU003494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG90591.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="239" mass="27178" checksum="F0D008AADE87B6F6" modified="2017-03-15" version="1">MSQPDIHLYTAATMNGYKPVIFLEEAEVPYDLTFINFAKQEQKAPGYLKLNPNGKIPTIVDRAEDRAIFESGAILWHLATKYGEFLPTDPVKQSEVMQWLFFQVGHIGPMMGQAMYFQRIAAPNGHDEPYSINRYVSESRRLLEVMNTRLEGRDWLAADEYTIADMATYPWARAYVWAKVEVDDLPHLKAWFDRIDARPAVQKALTIPKAQPQFWDAKADDGAFAAENAARFASDAKKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NNU5</accession>
    <name>A0A1M5NNU5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Phosphonate transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1519</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91168.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900193.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1519"/>
    <dbReference type="EnsemblBacteria" id="SHG91168">
        <property type="protein sequence ID" value="SHG91168"/>
        <property type="gene ID" value="SAMN05444003_1519"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015416">
        <property type="term" value="F:ABC-type phosphonate transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005769">
        <property type="entry name" value="PhnE/PtxC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01097">
        <property type="entry name" value="PhnE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="21"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="237"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="352"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="379"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="407"/>
            <end position="428"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="241"/>
            <end position="425"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG91168.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="437" mass="48672" checksum="BF748C7526889CF6" modified="2017-03-15" version="1">MTAVDINASKLAADSLFKRKRLVGFAIPAVIVTYLIYIFFSFDVAGLAGRANWNNAVTLASDSWSYKVHVTRDNRSGDVVYAVEGERKGLYPDGERPDWVSGDDVLTIDLGGDHIVRYLPDNRTEIEIPGFPLIEAQAEGRKVTSNLPDELPDWISASDRRIGITTEEGRITLTGARTEVFNYFPGWELFWFTLDSPYYGQSFTSIFFGQQIDPERSNVSGAANDFWYNKMWRHGDVAWAIGETILMAFLGTMGAAMIALPLAFLAAKRFSPFMLIRATTRRFFDFVRGVDALIWTVVLARAFGPGPLTGTLAILITDTGTFGKTFSEALENVDQRQIEGVSSTGAKPLQRYRFGVIPQVVPVLLAQILYFLESNTRSATIIGAITGGGIGLLLTQAIQTQKDWEEVAYYIVVIILMVMFMDWFSGWLRGKLIGRKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NT68</accession>
    <name>A0A1M5NT68_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1580</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG92667.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900248.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG92667">
        <property type="protein sequence ID" value="SHG92667"/>
        <property type="gene ID" value="SAMN05444003_1580"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG92667.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="179" mass="19198" checksum="C76340200975E2A9" modified="2017-03-15" version="1">MSRTKANLVLVCSALLIGCAPPVDDELISYFGAPEQDLAVAKNAVEICGNTSPKAREEAFRNIGFVNATFVNSERSIDDVDGLLLIEPESDVVVKLGQDGGVSGCIVGLKGMSPEQSFNLALIWVRKFGAVSNTELGQGLTPNAIEAWRFRGDGFPIFIAAYKTWDLLEEPGAAVRLSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NTI9</accession>
    <name>A0A1M5NTI9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">ATP synthase subunit delta</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">ATP synthase F(1) sector subunit delta</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">F-type ATPase subunit delta</fullName>
            <shortName evidence="7">F-ATPase subunit delta</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">atpH</name>
        <name evidence="8" type="ORF">SAMN05444003_1586</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.</text>
    </comment>
    <comment type="function">
        <text evidence="7">This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the ATPase delta chain family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG92820.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1586"/>
    <dbReference type="EnsemblBacteria" id="SHG92820">
        <property type="protein sequence ID" value="SHG92820"/>
        <property type="gene ID" value="SAMN05444003_1586"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045261">
        <property type="term" value="C:proton-transporting ATP synthase complex, catalytic core F(1)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.520.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01416">
        <property type="entry name" value="ATP_synth_delta_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026015">
        <property type="entry name" value="ATP_synth_OSCP/delta_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020781">
        <property type="entry name" value="ATPase_OSCP/d_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000711">
        <property type="entry name" value="ATPase_OSCP/dsu"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11910">
        <property type="entry name" value="PTHR11910"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00213">
        <property type="entry name" value="OSCP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00125">
        <property type="entry name" value="ATPASEDELTA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47928">
        <property type="entry name" value="SSF47928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01145">
        <property type="entry name" value="ATP_synt_delta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00389">
        <property type="entry name" value="ATPASE_DELTA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 7" id="KW-0139">CF(1)</keyword>
    <keyword evidence="2 7" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="3 7" id="KW-0406">Ion transport</keyword>
    <keyword evidence="4 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG92820.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="186" mass="19813" checksum="DA650FFAB2D1F30F" modified="2017-03-15" version="1">MSEPASISSGIAQRYATAVFELAKEGKKLKALETDLGALEAAITDSDDLRALLNSPIYTREEQSAAIAAVAKKMKLSPTMTNTLALLASKRRLFVLPQLVKALREQLAEERGEVTAEVVSAKALTKAQSDKLAKTLKEQVGKAVTINATVDESIIGGLIVKVGSKMIDTSIKSKLSALQNTMKEVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NV71</accession>
    <name>A0A1M5NV71_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1610</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93400.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900275.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG93400">
        <property type="protein sequence ID" value="SHG93400"/>
        <property type="gene ID" value="SAMN05444003_1610"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.102.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036922">
        <property type="entry name" value="Rieske_2Fe-2S_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50022">
        <property type="entry name" value="SSF50022"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013064746" evidence="1">
        <location>
            <begin position="30"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG93400.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="186" mass="19790" checksum="8A84799C44EFBC9E" modified="2017-03-15" version="1">MKTISRRHVILTLSSATITLCPALLNAQAVEFDWGEDVPTNVPRGEDQTVMLAAGETDVDISSLTAGQVAVIGRPTDDPEYSNTDGIQYVAVLRRTDAQIEQGAPEQAVADPRFFVANLVCPHRGYAVGVTDLEVAPFACTKRGSRHGSVFNAGGFGVAGRSEGDFLSVPDYQINDNGGQIILTLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NWG3</accession>
    <name>A0A1M5NWG3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF1801 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1628</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93837.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900290.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG93837">
        <property type="protein sequence ID" value="SHG93837"/>
        <property type="gene ID" value="SAMN05444003_1628"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014922">
        <property type="entry name" value="DUF1801"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08818">
        <property type="entry name" value="DUF1801"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1801" evidence="1">
        <location>
            <begin position="25"/>
            <end position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08818"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG93837.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="142" mass="16063" checksum="589DDC52E883926D" modified="2017-03-15" version="1">MSENKTQPTEVSVDEFIANVMPDRRREDALILNQLFKDVTGWQPQMWGPTMIGYGSYHYIYDSGREGDSVATGFSPRKANLVLYIMPRYQDFGHILDKLGKHKLGKACLYINKLADVDIDVVAEIIRAGVDDLGTRWPITPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NWL0</accession>
    <name>A0A1M5NWL0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Cell shape-determining protein MreB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">mreB</name>
        <name evidence="3" type="ORF">SAMN05444003_1634</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Forms membrane-associated dynamic filaments that are essential for cell shape determination. Acts by regulating cell wall synthesis and cell elongation, and thus cell shape. A feedback loop between cell geometry and MreB localization may maintain elongated cell shape by targeting cell wall growth to regions of negative cell wall curvature.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Forms polymers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="2">Membrane-associated.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the FtsA/MreB family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93966.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900296.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1634"/>
    <dbReference type="EnsemblBacteria" id="SHG93966">
        <property type="protein sequence ID" value="SHG93966"/>
        <property type="gene ID" value="SAMN05444003_1634"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000902">
        <property type="term" value="P:cell morphogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd10225">
        <property type="entry name" value="MreB_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02207">
        <property type="entry name" value="MreB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004753">
        <property type="entry name" value="MreB"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01652">
        <property type="entry name" value="SHAPEPROTEIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00904">
        <property type="entry name" value="mreB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0133">Cell shape</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="18"/>
            <end position="20"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="164"/>
            <end position="166"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="212"/>
            <end position="215"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="294"/>
            <end position="297"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02207"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG93966.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="345" mass="36541" checksum="CCA7DF8E2F4599A5" modified="2017-03-15" version="1">MAIFGSLFSSDMAIDLGTANTLVYVKGKGVILSEPSVVAYHVKDGQKKVLATGEDAKMMLGRTPGSIEAIRPMRDGVIADFDTAEEMIKHFIRKVAKRSTFSKPKIIVCVPHGATPVEKRAIRQSVLSAGARRAGLIAEPIAAAIGAGMPITDPTGNMVVDIGGGTTEVAVLSLGDIVYARSVRVGGDRMDEAIVNYLRRQHNLLIGESTAERIKTSIGTARMPDDGRGSSMHIRGRDLLNGVPKESEISQAQVAEALAEPVQQICEAVMTALEATPPDLAADIVDRGVMLTGGGALLGQLDLALREQTGLAISVADESLNCVALGTGKALEYEKQLRHVIDYES</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NWV4</accession>
    <name>A0A1M5NWV4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Rod shape-determining protein MreD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1636</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG94011.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900298.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1636"/>
    <dbReference type="EnsemblBacteria" id="SHG94011">
        <property type="protein sequence ID" value="SHG94011"/>
        <property type="gene ID" value="SAMN05444003_1636"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="109"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="137"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG94011.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="179" mass="19806" checksum="25BCB7728406F764" modified="2017-03-15" version="1">MAETPNMQIWIGRAVYVGICVLLIFLQLMPLDARPEIIPWPDLLLLVTLVWVARRPDYTPVIAIVALFFLTDLLFQRPPGLWTALVIILTESLRKRANQLRNAPAALEWGSIALGIVAITLAYRAILFIALTHAPPLGLTLIQMVITILSYPVVAILAHYVFGVSRPTPGAIDSLGHRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NX68</accession>
    <name>A0A1M5NX68_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glyoxylate/hydroxypyruvate reductase A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1639</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG94087.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900301.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1639"/>
    <dbReference type="EnsemblBacteria" id="SHG94087">
        <property type="protein sequence ID" value="SHG94087"/>
        <property type="gene ID" value="SAMN05444003_1639"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016614">
        <property type="term" value="F:oxidoreductase activity, acting on CH-OH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029753">
        <property type="entry name" value="D-isomer_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006140">
        <property type="entry name" value="D-isomer_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02826">
        <property type="entry name" value="2-Hacid_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00671">
        <property type="entry name" value="D_2_HYDROXYACID_DH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2-Hacid_dh_C" evidence="2">
        <location>
            <begin position="113"/>
            <end position="275"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG94087.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="310" mass="33768" checksum="4834EE5242AA949D" modified="2017-03-15" version="1">MLKVMFSAKPAAWEEYRETLMTAFDAEGLDVDLSRDHDPAEVDYIVFAPNGPVSDFRPYTKTKAVLSLWAGVETVVGNETLTQPLLRMVDHGLTAGMVEWVVGHTLRHHLGMDAHITQQDGVWRDTVYPPIAAQRTVTILGIGALGAACGQALHGLGFPVRGWSRTPKQIENIECFSGDDGLRDTLSGAEVVILLLPDTPDTRHVLNAETLGLLARGGFVINPGRGPLIDDDSLLAALDRGQVAHATLDVFDVEPLPKDHPFWSHPNVTVTPHIASTTRADTASQVIAQQIKRGERGEPFLHVVDRQAGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PJZ0</accession>
    <name>A0A1M5PJZ0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Peptide-methionine (R)-S-oxide reductase</fullName>
            <ecNumber evidence="2">1.8.4.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_1689</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>[thioredoxin]-disulfide + H2O + L-methionyl-[protein] = [thioredoxin]-dithiol + L-methionyl-(R)-S-oxide-[protein]</text>
            <dbReference type="Rhea" id="RHEA:24164"/>
            <dbReference type="Rhea" id="RHEA-COMP:10698"/>
            <dbReference type="Rhea" id="RHEA-COMP:10700"/>
            <dbReference type="Rhea" id="RHEA-COMP:12313"/>
            <dbReference type="Rhea" id="RHEA-COMP:12314"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16044"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:45764"/>
            <dbReference type="ChEBI" id="CHEBI:50058"/>
            <dbReference type="EC" id="1.8.4.12"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="1.8.4.12" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH02136">
        <property type="protein sequence ID" value="SHH02136"/>
        <property type="gene ID" value="SAMN05444003_1689"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033743">
        <property type="term" value="F:peptide-methionine (R)-S-oxide reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002579">
        <property type="entry name" value="Met_Sox_Rdtase_MsrB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011057">
        <property type="entry name" value="Mss4-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01641">
        <property type="entry name" value="SelR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51316">
        <property type="entry name" value="SSF51316"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51790">
        <property type="entry name" value="MSRB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013268546" description="Peptide-methionine (R)-S-oxide reductase" evidence="4">
        <location>
            <begin position="29"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="domain" description="MsrB" evidence="5">
        <location>
            <begin position="45"/>
            <end position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012499"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51790"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH02136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="172" mass="18961" checksum="2DD95E8B8314E9CF" modified="2017-03-15" version="1">MTKIQRRELLAGTVAATALTLTSKSASADVPAGRDPFTYEVQRTDAEWRELLGDSYPIMREGKTEKPFSSDTWAEAREGEYRCRGCDLVHYSSFTKVALAKGWLFFTASEPNSQLMSQDGPNVMADGNSPFDVIIEVHCRRCGSHTGHILKVDGRTLHCINGASLDFIEATA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PKD5</accession>
    <name>A0A1M5PKD5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1693</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02211.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1693"/>
    <dbReference type="EnsemblBacteria" id="SHH02211">
        <property type="protein sequence ID" value="SHH02211"/>
        <property type="gene ID" value="SAMN05444003_1693"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5011979681" evidence="1">
        <location>
            <begin position="21"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH02211.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="172" mass="18876" checksum="98BBE3F2F7AE3486" modified="2017-03-15" version="1">MFRFLIICLMSLPIALSAQEREPLMTPDRMFQIALALDPDARPLPNGIEMTIEDVPVLIVADIVANRMRAMVPIRLAEGMTPEELERVLQANFDTALDSRYALANGRLWAVYIHPFAQLERDQFISGIAQTVNIANSYGTLFSGGAAQFGAGDLNLARAIVSICSAIFCKSC</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PL45</accession>
    <name>A0A1M5PL45_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Ribose-5-phosphate isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1707</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LacAB/RpiB family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02496.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900523.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1707"/>
    <dbReference type="EnsemblBacteria" id="SHH02496">
        <property type="protein sequence ID" value="SHH02496"/>
        <property type="gene ID" value="SAMN05444003_1707"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016861">
        <property type="term" value="F:intramolecular oxidoreductase activity, interconverting aldoses and ketoses"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1400.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004785">
        <property type="entry name" value="RpiB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003500">
        <property type="entry name" value="RpiB_LacA_LacB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036569">
        <property type="entry name" value="RpiB_LacA_LacB_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02502">
        <property type="entry name" value="LacAB_rpiB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005384">
        <property type="entry name" value="RpiB_LacA_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89623">
        <property type="entry name" value="SSF89623"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01120">
        <property type="entry name" value="rpiB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00689">
        <property type="entry name" value="rpiB_lacA_lacB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="D-ribulose 5-phosphate binding" evidence="3">
        <location>
            <begin position="11"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="region of interest" description="D-ribulose 5-phosphate binding" evidence="3">
        <location>
            <begin position="69"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="2">
        <location>
            <position position="101"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="102"/>
        </location>
        <ligand>
            <name>D-ribulose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58121"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="112"/>
        </location>
        <ligand>
            <name>D-ribulose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58121"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="135"/>
        </location>
        <ligand>
            <name>D-ribulose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58121"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="139"/>
        </location>
        <ligand>
            <name>D-ribulose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58121"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008754"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR005384-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR005384-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH02496.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="145" mass="15195" checksum="E1E19E170D3B3679" modified="2017-03-15" version="1">MTNKRIVLSSDHAAIDLRQAIAAHVAAKGWEAVDIGPTTTESTHYPLHGKAAAEKVASGECRFGIIVCGTGQGIMMAANKVDGIRCGVCSDAFSAKMIRAHNDANMMALGARVLGEGLALDLVDAFLETEFEGGRHATRVGMIEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PL52</accession>
    <name>A0A1M5PL52_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1708</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02514.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH02514">
        <property type="protein sequence ID" value="SHH02514"/>
        <property type="gene ID" value="SAMN05444003_1708"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013216">
        <property type="entry name" value="Methyltransf_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08241">
        <property type="entry name" value="Methyltransf_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransf_11" evidence="1">
        <location>
            <begin position="77"/>
            <end position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH02514.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="237" mass="26413" checksum="6FC3C259F818A27F" modified="2017-03-15" version="1">MERNTIPVWRRTFGSWQFSVSRNAMTTQELEQDYDLAASIWQKTISKLGFERAYDQLVRTGIESLLAKDPDNEFAVLDIGIGSGAMTAAFAGQVAQPAKYFGVDLSGEMLNVARNRLRGIGIDADLTKSDADALPYADNSFDVVMAAHVFEHTVDPKHAIEEALRVLKPNGVLLACITKQSLMGAYIHLKWRTHRASQDRALDWFRSAGADRVLVQQFTANSWARGFSCGYIVRKPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PN38</accession>
    <name>A0A1M5PN38_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DMSO reductase anchor subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1744</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03215.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900553.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1744"/>
    <dbReference type="EnsemblBacteria" id="SHH03215">
        <property type="protein sequence ID" value="SHH03215"/>
        <property type="gene ID" value="SAMN05444003_1744"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019645">
        <property type="term" value="P:anaerobic electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007059">
        <property type="entry name" value="DmsC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38095">
        <property type="entry name" value="PTHR38095"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04976">
        <property type="entry name" value="DmsC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="34"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="80"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="106"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="147"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="232"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="258"/>
            <end position="278"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH03215.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="293" mass="31612" checksum="E7A5CBA7EED74695" modified="2017-03-15" version="1">MHPAPSVIIFNTFSGIGFGLLFFLGLGFPAPTGWVAFVFFAIAYIMAVGGLIASTFHLGHPERAIKAFSQWRTSWLSREGICAVAALIIMAIYGAGLVFFGTKLTILGWVGAVLSLGVVYTTSMIYAQMKTVPRWKHWSTPALFIDLSVAGGALLSGNIVIALIMLVIAGGMTAYYWATGDKRFAESGSNLANATGLGGIGSVRAFEPPHTGSNYLLKEFAFEVGRKHVQKLRIISMVFGFAIPFVLLLMVQASASHILALFAVISHIVGVLALRWLFFAQAEHVVGLYYGKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PQY8</accession>
    <name>A0A1M5PQY8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Peptide deformylase</fullName>
            <shortName evidence="2">PDF</shortName>
            <ecNumber evidence="2">3.5.1.88</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Polypeptide deformylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">def</name>
        <name evidence="3" type="ORF">SAMN05444003_1797</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>H2O + N-terminal N-formyl-L-methionyl-[peptide] = formate + N-terminal L-methionyl-[peptide]</text>
            <dbReference type="Rhea" id="RHEA:24420"/>
            <dbReference type="Rhea" id="RHEA-COMP:10639"/>
            <dbReference type="Rhea" id="RHEA-COMP:10640"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:49298"/>
            <dbReference type="ChEBI" id="CHEBI:64731"/>
            <dbReference type="EC" id="3.5.1.88"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
        <text evidence="2">Binds 1 Fe(2+) ion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the polypeptide deformylase family.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.88" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04265.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1797"/>
    <dbReference type="EnsemblBacteria" id="SHH04265">
        <property type="protein sequence ID" value="SHH04265"/>
        <property type="gene ID" value="SAMN05444003_1797"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042586">
        <property type="term" value="F:peptide deformylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00487">
        <property type="entry name" value="Pep_deformylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.45.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00163">
        <property type="entry name" value="Pep_deformylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023635">
        <property type="entry name" value="Peptide_deformylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036821">
        <property type="entry name" value="Peptide_deformylase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10458">
        <property type="entry name" value="PTHR10458"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01327">
        <property type="entry name" value="Pep_deformylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004749">
        <property type="entry name" value="Pep_def"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01576">
        <property type="entry name" value="PDEFORMYLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56420">
        <property type="entry name" value="SSF56420"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00079">
        <property type="entry name" value="pept_deformyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" evidence="2">
        <location>
            <position position="132"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="89"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="131"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="135"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH04265.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="167" mass="19056" checksum="8809294B85FF751D" modified="2017-03-15" version="1">MIHPDPRLKKVTEPVAEVTDDIRALANDMLETMYDAPGIGLAAPQVAVMKQMLVMDCVKDEGEAPRPMVLLNPKVIWESEERGTYEEGCLSIPDQYAEVERPAEVKVEWLGLDGETHQEAFDGLWATCVQHEIDHLNGKLFIDYLKPLKRQMITRKMQKLKRERARG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PTG5</accession>
    <name>A0A1M5PTG5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">tRNA U34 5-methylaminomethyl-2-thiouridine-forming methyltransferase MnmC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1831</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH04940.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900625.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1831"/>
    <dbReference type="EnsemblBacteria" id="SHH04940">
        <property type="protein sequence ID" value="SHH04940"/>
        <property type="gene ID" value="SAMN05444003_1831"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016645">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-NH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008471">
        <property type="entry name" value="MnmC-like_methylTransf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05430">
        <property type="entry name" value="Methyltransf_30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransf_30" evidence="1">
        <location>
            <begin position="124"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05430"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH04940.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="224" mass="24692" checksum="57419C0A85B3AF76" modified="2017-03-15" version="1">MTDQTAQLEWRDTDAGAVPISTRFDDPYYSLDNGLAETQHVFLSGNDLPNRFTDGFHIAELGFGTGLNFLATLQSFRASGTEGKLRFTSFEAYPMAFADLQQALQPYPDLPTDVFASDPTDGLSGEDFDLTVITGDARETLPNWQGQADAWFLDGFSPAKNPELWDDALIKEVGRHTKPNGTFATYTAAGHVRRALTDAGFQVERAKGFGRKRHMSVGTKRDAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PTR2</accession>
    <name>A0A1M5PTR2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Cell division transport system ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1851</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05367.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900644.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1851"/>
    <dbReference type="EnsemblBacteria" id="SHH05367">
        <property type="protein sequence ID" value="SHH05367"/>
        <property type="gene ID" value="SAMN05444003_1851"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="5" id="KW-0132">Cell division</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="2"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="34"/>
            <end position="41"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH05367.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="224" mass="24567" checksum="D370E2B7C314F4D6" modified="2017-03-15" version="1">MIELEDVAYSYGGAELFSGLSLKLAPGSFHFLTGPSGAGKTTLLKLCYGELLATSGHVMLFEQDAARLDRDQVAMMRRRIGVVHQDCQFLDHLTMRDNVALPLTVSGRSSAFSADLDDLLAWVGLRRQADQLPPQLSGGERQRAALARAVIMSPDVIIADEPTGNIDWEMSQRLLSLLIELNKMGKTILVATHDLNLIRAAKSQVSSRVLRLKDRQLQQAGAEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PV41</accession>
    <name>A0A1M5PV41_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ion channel</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1840</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05143.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900634.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH05143">
        <property type="protein sequence ID" value="SHH05143"/>
        <property type="gene ID" value="SAMN05444003_1840"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013099">
        <property type="entry name" value="K_chnl_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07885">
        <property type="entry name" value="Ion_trans_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="46"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="84"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="108"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="domain" description="Ion_trans_2" evidence="2">
        <location>
            <begin position="63"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH05143.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="142" mass="15796" checksum="0A8B86B004657A42" modified="2017-03-15" version="1">MLVQISIGAAILMVSMIFSAAGFWLIESALRQLNRFLATLRQGLKVVIFLMVAALWALLQITVGVWLWAWCFMQLAVFDTMEEAVYFGLVSYTTLGYGDVILPEQWRLLGGMTAVNGLLNVGLISAIMIELLRQARVVPIDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PWT2</accession>
    <name>A0A1M5PWT2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 7">S-(hydroxymethyl)glutathione dehydrogenase</fullName>
            <ecNumber evidence="5 7">1.1.1.284</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_1897</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>NAD(+) + S-(hydroxymethyl)glutathione = H(+) + NADH + S-formylglutathione</text>
            <dbReference type="Rhea" id="RHEA:19985"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57688"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:58758"/>
            <dbReference type="EC" id="1.1.1.284"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>NADP(+) + S-(hydroxymethyl)glutathione = H(+) + NADPH + S-formylglutathione</text>
            <dbReference type="Rhea" id="RHEA:19981"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57688"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:58758"/>
            <dbReference type="EC" id="1.1.1.284"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3 7">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="4 7">Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.284" evidence="5 7"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06288.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900683.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1897"/>
    <dbReference type="EnsemblBacteria" id="SHH06288">
        <property type="protein sequence ID" value="SHH06288"/>
        <property type="gene ID" value="SAMN05444003_1897"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106322">
        <property type="term" value="F:S-(hydroxymethyl)glutathione dehydrogenase NAD activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106321">
        <property type="term" value="F:S-(hydroxymethyl)glutathione dehydrogenase NADP activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006069">
        <property type="term" value="P:ethanol oxidation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd08300">
        <property type="entry name" value="alcohol_DH_class_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014183">
        <property type="entry name" value="ADH_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002328">
        <property type="entry name" value="ADH_Zn_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02818">
        <property type="entry name" value="adh_III_F_hyde"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00059">
        <property type="entry name" value="ADH_ZINC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0520">NAD</keyword>
    <keyword evidence="6 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="ADH_N" evidence="9">
        <location>
            <begin position="28"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="domain" description="ADH_zinc_N" evidence="8">
        <location>
            <begin position="198"/>
            <end position="330"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001030"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001646"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012309"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU362016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00107"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF08240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH06288.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="370" mass="38919" checksum="AD686F413B9D8DA7" modified="2017-03-15" version="1">MRTRAAVALEAGKPLEVMEVNLDGPKAGEVLVEIKATGICHTDEFTLSGADPEGLFPAILGHEGAGVVLEVGEGVTSLQPGDHVIPLYTPECRECDYCLNPKTNLCQSIRATQGQGVMPDGTSRFSMLDGTPILHYMGCSTFSNHTVLPEIALAKVRQDAPFDKICYIGCGVTTGIGAVINTAKVEIGSRAIVFGLGGIGLNVIQGLRLAGADQIVGVDINPDKVPMATKFGMTDFVNPTEVSGDLVGHLVELTGGGGDYTFDATGNVGVMRTALEAAHKGWGESIIIGVAPAGAEISTRPFQLVTGRSWRGTAFGGASGRTDVPKIVDWYMDGKIEIDPMITHTMSLDDINSGFDLMHAGKSIRSVVVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PYJ6</accession>
    <name>A0A1M5PYJ6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1934</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06914.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH06914">
        <property type="protein sequence ID" value="SHH06914"/>
        <property type="gene ID" value="SAMN05444003_1934"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012115702" evidence="1">
        <location>
            <begin position="21"/>
            <end position="200"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH06914.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="200" mass="20453" checksum="33641962159DC0DA" modified="2017-03-15" version="1">MHLRSMAARWAAISSLAITAACDDFALSGLSLGGGAQSLALVGGHVVAVGPSGYCVDSWASNPAQGFAAIVACASLSSSEAIPSRLAFMTLQVGEDGSAFAVNESTLRSLMRSAQAFDGVGSPDFSVDQGTEAALVVYRSSEPSTPIQGRAIFDVGERAAVLTLNEISGAPLSFPAAKRLMIETLRRLRSANATNGAEGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q097</accession>
    <name>A0A1M5Q097_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1948</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07191.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900724.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1948"/>
    <dbReference type="EnsemblBacteria" id="SHH07191">
        <property type="protein sequence ID" value="SHH07191"/>
        <property type="gene ID" value="SAMN05444003_1948"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="52"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH07191.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="330" mass="36718" checksum="5E2213C1AFD9909C" modified="2017-03-15" version="1">MVLDRKRRVENDTGISSTEIIAITLSVIWMAAVGLFFLILPPQSDPSAPFDSLRVVLILMAIFLPVAMIWVAAAASRSARIMREESNRLQRSIDGMRETYIADRNAQNGGSAPTVERKLNEIAQTAKKTETTLATFASTREAQPQRLAITSVRSTDSEDQPTLALGTSTEDMTPVLARPDLIRALNFPDTDQDTEGFTALRRALQDRSARQLVQAAQDILTLLSQDGIYMDDLRPDRARPEIWRRFAKGERGRAMASLGGVRDRSSLALTAGRMREDTIFRDAAHHFLRRFDQMLITFETDATDADLIALSETRSARAFMLLGRVAGTFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q3Y3</accession>
    <name>A0A1M5Q3Y3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Thioesterase-like superfamily protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2014</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08449.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900774.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2014"/>
    <dbReference type="EnsemblBacteria" id="SHH08449">
        <property type="protein sequence ID" value="SHH08449"/>
        <property type="gene ID" value="SAMN05444003_2014"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH08449.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="180" mass="20876" checksum="F8523E11ED330865" modified="2017-03-15" version="1">MYPVIRMGKEFFAHRNAPDLPVLGIHVSHHRCWPQDIDVFIEMNNGRILTILDLGRTILAKRVGLLRTLKENSWGMTMAGVSVRYRRRIKPFVKFQMVSRYIGWDDKFFYLDQSIWIGENCAVQALYRSAITDEHGIVKPDRVFAAAGYTDDRPALPDWVQNWIDAESTRIWPPEAGENI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q427</accession>
    <name>A0A1M5Q427_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized conserved protein, tellurite resistance protein B (TerB) family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2024</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08646.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900905.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2024"/>
    <dbReference type="EnsemblBacteria" id="SHH08646">
        <property type="protein sequence ID" value="SHH08646"/>
        <property type="gene ID" value="SAMN05444003_2024"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3680.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007791">
        <property type="entry name" value="DjlA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029024">
        <property type="entry name" value="TerB-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05099">
        <property type="entry name" value="TerB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF158682">
        <property type="entry name" value="SSF158682"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TerB" evidence="1">
        <location>
            <begin position="26"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05099"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH08646.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="147" mass="16222" checksum="2BB3239D413C6B81" modified="2017-03-15" version="1">MIDRLLAFFKAPEDHETPLPETDARHALGALLVRAAKADHLYLFEEVQQIDKVLAERNGLNPVEAAKMRASCEKLEAEMPPTEELATILKTAVSDAEKEATVAALWKVVFADGIEHENEDELLHQIEAVLGVSPATAKRFHDEAAQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QGT5</accession>
    <name>A0A1M5QGT5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Phage integrase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2111</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH13282.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH13282">
        <property type="protein sequence ID" value="SHH13282"/>
        <property type="gene ID" value="SAMN05444003_2111"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tyr recombinase" evidence="2">
        <location>
            <begin position="24"/>
            <end position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH13282.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="228" mass="26174" checksum="6E023A3C71CD050F" modified="2017-03-15" version="1">METTLNLPAIRALRPAWNKGRIVGQKRPLNPKYVWAIRVRLELAENHRDLALFNMAIDSKLRGCDLVKMKVVDVMASGQIKERASVLQSKNKKPVRFKISEGTRASVEKWMEDELMVGSEYLWPGRFHERLHISTRQYARIVRDWVMSIGLEASAYGTHSVRRTKVTQIYKKTGNLRAVQLLLGHTKMDSAVRYLGVELEDALADPPPLKWSAPIVRKRRIRYGNQAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QHK8</accession>
    <name>A0A1M5QHK8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2127</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH13615.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900929.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH13615">
        <property type="protein sequence ID" value="SHH13615"/>
        <property type="gene ID" value="SAMN05444003_2127"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="29"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="62"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH13615.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="98" mass="11117" checksum="5428E68F1404C45B" modified="2017-03-15" version="1">MRHLQPTSPKLRRAMIERATRRAIEPLNILNDLAVVTFIVSATGFVRFQYFDPLDGFTLLSAAQLIITTIAMAFVPFFFGAILTLELARRRLEAMTEC</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QIV6</accession>
    <name>A0A1M5QIV6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">DNA-binding response regulator, OmpR family, contains REC and winged-helix (WHTH) domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2140</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH13858.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2140"/>
    <dbReference type="EnsemblBacteria" id="SHH13858">
        <property type="protein sequence ID" value="SHH13858"/>
        <property type="gene ID" value="SAMN05444003_2140"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3 6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="19"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="5">
        <location>
            <begin position="144"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="3">
        <location>
            <begin position="144"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH13858.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="244" mass="27120" checksum="407E5B6BFD8F2222" modified="2017-03-15" version="1">MQKLRWPFGVTSTNSLSMKILLLEDDKEIGEWVRDGLSRAGHVVDWHENGRDALVAATTQEFDLLILDRMTPELDGLSVLKAVRATKNMTPAIFLTALGDVDDRVEGLQAGADDYLPKPFAFTELEARVSALGRRNSGGDTGEVTALTAGDISLDLLKQRCTRRGEVIDLNAKEFRLLEAFVRSNGRVLTRNMLLEKVWDMNFDPTTSVVETHISRLRGKIEKPFGDSVIKTRRGAGYVFEPTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QJ64</accession>
    <name>A0A1M5QJ64_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Lipopolysaccharide export system ATP-binding protein LptB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">SAMN05444003_2154</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Part of the ABC transporter complex LptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane. Probably responsible for energy coupling to the transport system.</text>
    </comment>
    <comment type="subunit">
        <text evidence="11">Component of the lipopolysaccharide transport and assembly complex. The LptBFG transporter is composed of two ATP-binding proteins (LptB) and two transmembrane proteins (LptF and LptG).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cell inner membrane</location>
            <topology evidence="3">Peripheral membrane protein</topology>
            <orientation evidence="3">Cytoplasmic side</orientation>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the ABC transporter superfamily. Outer membrane lipopolysaccharide export (TC 1.B.42) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14145.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900968.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2154"/>
    <dbReference type="EnsemblBacteria" id="SHH14145">
        <property type="protein sequence ID" value="SHH14145"/>
        <property type="gene ID" value="SAMN05444003_2154"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03218">
        <property type="entry name" value="ABC_YhbG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032823">
        <property type="entry name" value="BCA_ABC_TP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030921">
        <property type="entry name" value="LPS_export_LptB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12399">
        <property type="entry name" value="BCA_ABC_TP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04406">
        <property type="entry name" value="LPS_export_lptB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 12 14" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 12" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="13">
        <location>
            <begin position="13"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <begin position="45"/>
            <end position="52"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004287"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010865"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00017803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00024818"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00026081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="SHH14145.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="250" mass="27727" checksum="7052EFB92096015F" modified="2017-03-15" version="1">MAELSVQEGDLGLRIVNLRKSYRKRLVIRDVSMDLGRGEVVALLGPNGSGKTTCFYSIAGLVTPEGGQVIIDGRDVTSLPMYRRAQLGIGYLPQEMSIFRGMTVEDNIMAILEIAEPKRHLRQKKLDDLLSEFSIEHIRRAPALALSGGERRRAEIARCLAAGPKYVLLDEPFAGVDPIAVGEIRHLVADLKNRGIGVLITDHNVQETLQIVDRAYILHDGRVLMSGTTEEVVQDENVRRVYLGQGFRVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QK07</accession>
    <name>A0A1M5QK07_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Ribosome hibernation promoting factor</fullName>
            <shortName evidence="2">HPF</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">hpf</name>
        <name evidence="4" type="ORF">SAMN05444003_2155</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Interacts with 100S ribosomes.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the HPF/YfiA ribosome-associated protein family. Long HPF subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14171.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901467.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2155"/>
    <dbReference type="EnsemblBacteria" id="SHH14171">
        <property type="protein sequence ID" value="SHH14171"/>
        <property type="gene ID" value="SAMN05444003_2155"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044238">
        <property type="term" value="P:primary metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006417">
        <property type="term" value="P:regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00552">
        <property type="entry name" value="RaiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.505.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00839">
        <property type="entry name" value="HPF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034694">
        <property type="entry name" value="HPF_long/plastid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036567">
        <property type="entry name" value="RHF-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003489">
        <property type="entry name" value="RHF/RaiA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032528">
        <property type="entry name" value="Ribosom_S30AE_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038416">
        <property type="entry name" value="Ribosom_S30AE_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16321">
        <property type="entry name" value="Ribosom_S30AE_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02482">
        <property type="entry name" value="Ribosomal_S30AE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69754">
        <property type="entry name" value="SSF69754"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00741">
        <property type="entry name" value="yfiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0810">Translation regulation</keyword>
    <feature type="domain" description="Ribosom_S30AE_C" evidence="3">
        <location>
            <begin position="130"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF16321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH14171.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="191" mass="21185" checksum="56EE57515B9FFE51" modified="2017-03-15" version="1">MRYQISGKQIDIGAALQTHVESELSDLLEKYAGRPTDAVVTFSKSGHEFVCETVVHLSTGLNVQAKGSNHEIYAAFDASSEKMDKQLRRNKRRLKDHHKERSQPVELSDAGSYILASSDDSDVAEEQDFTPVIVAEMETKIPSISVGEAVMQMELANSSVVVFRNEKNNSVNVVYKRDDGNIGWIDPRADA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QKI6</accession>
    <name>A0A1M5QKI6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">DNA repair protein RadC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_2171</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="6">Belongs to the UPF0758 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14508.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900990.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2171"/>
    <dbReference type="EnsemblBacteria" id="SHH14508">
        <property type="protein sequence ID" value="SHH14508"/>
        <property type="gene ID" value="SAMN05444003_2171"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd08071">
        <property type="entry name" value="MPN_DUF2466"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037518">
        <property type="entry name" value="MPN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025657">
        <property type="entry name" value="RadC_JAB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010994">
        <property type="entry name" value="RuvA_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001405">
        <property type="entry name" value="UPF0758"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020891">
        <property type="entry name" value="UPF0758_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30471">
        <property type="entry name" value="PTHR30471"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04002">
        <property type="entry name" value="RadC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47781">
        <property type="entry name" value="SSF47781"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00608">
        <property type="entry name" value="radc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50249">
        <property type="entry name" value="MPN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01302">
        <property type="entry name" value="UPF0758"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="MPN" evidence="7">
        <location>
            <begin position="124"/>
            <end position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003797"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50249"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH14508.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="246" mass="27472" checksum="FD1AE596A40437F8" modified="2017-03-15" version="1">MPNFAETQTIFPIPEAKSTKNDQPAYVAGYRKRIRTRFKDGGADAMPDYELLELILFRSIRRGDPKPLAYELIKQFGDFNRVLAAPLDQLTKVKCIGPATALEIKIVEAAAHRMAQSQVLKQHVISSWDALIKYCHTVMAHREAEQFRILFLDTKNTLIADEEQAKGTVDHVPVYPREVVKRALELNAASILLVHNHPSGDPTPSQADITMTDQIVQAAQALGIMVHDHLIIGKSRELSFRAAGLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QM32</accession>
    <name>A0A1M5QM32_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Threonine/homoserine/homoserine lactone efflux protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2203</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15187.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901045.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH15187">
        <property type="protein sequence ID" value="SHH15187"/>
        <property type="gene ID" value="SAMN05444003_2203"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001123">
        <property type="entry name" value="LeuE-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30086">
        <property type="entry name" value="PTHR30086"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01810">
        <property type="entry name" value="LysE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="36"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="68"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="108"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="140"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="174"/>
            <end position="191"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH15187.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="192" mass="21090" checksum="437E52D3480F9C2E" modified="2017-03-15" version="1">MINFALTGFVFFGLFSPGPNVILVTASGARFGWNRTIPHILGIVVGVGVIAGLTGLGIGQVLSSNPNLFVVLQVIACCWILWMAYQLWRSSPKEVDSRDRPFTFVEALLFQWVNPKIWAVALTATAFLADQPPVSQAITLGLTFSILNLFVCSFWTGFGSLLSRLLVDETSWRIFMRIMAVGLVIFSALIFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QPS1</accession>
    <name>A0A1M5QPS1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Response regulator receiver protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2249</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16095.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901123.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2249"/>
    <dbReference type="EnsemblBacteria" id="SHH16095">
        <property type="protein sequence ID" value="SHH16095"/>
        <property type="gene ID" value="SAMN05444003_2249"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="11"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH16095.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="181" mass="20031" checksum="C460F8F7CCCF7765" modified="2017-03-15" version="1">MENPDLGPDPSLLLVDDDEAFVRRLAKAMEKRGFSVETAQSVAEGQTIAMARPPAYAVVDLRLEDGNGLDVVETLRARRPESRIVVLTGYGAIATAVAAVKIGATDYMAKPADATDVTNALLATQDELPPPPENPMSADRVRWEHIQRVYELCDRNVSETARRLNMHRRTLQRILAKRSPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QQT5</accession>
    <name>A0A1M5QQT5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Predicted RNA-binding protein, contains PUA-like domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2256</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16211.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901489.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2256"/>
    <dbReference type="EnsemblBacteria" id="SHH16211">
        <property type="protein sequence ID" value="SHH16211"/>
        <property type="gene ID" value="SAMN05444003_2256"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002740">
        <property type="entry name" value="EVE_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015947">
        <property type="entry name" value="PUA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01878">
        <property type="entry name" value="EVE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88697">
        <property type="entry name" value="SSF88697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="EVE" evidence="1">
        <location>
            <begin position="2"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH16211.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="139" mass="15869" checksum="A8416664330889F5" modified="2017-03-15" version="1">MAYWLFKSEPDVFGWDDLTAKGDVGEEWDGVRNYQARNNMRAMKMGDLGFFYHSRSGLEIVGVVEVCAESHQDSTTDDERWDCVDVRAIRSFVKPVSLDMIKADQRLSEMVLVKNSRLSVQPVTDDEWNIVCSLGETKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QT12</accession>
    <name>A0A1M5QT12_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Sugar transferase involved in LPS biosynthesis (Colanic, teichoic acid)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2291</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial sugar transferase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16910.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901181.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2291"/>
    <dbReference type="EnsemblBacteria" id="SHH16910">
        <property type="protein sequence ID" value="SHH16910"/>
        <property type="gene ID" value="SAMN05444003_2291"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000271">
        <property type="term" value="P:polysaccharide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003362">
        <property type="entry name" value="Bact_transf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02397">
        <property type="entry name" value="Bac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0270">Exopolysaccharide synthesis</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="7"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="domain" description="Bac_transf" evidence="4">
        <location>
            <begin position="3"/>
            <end position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02397"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH16910.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="184" mass="20120" checksum="A81E03EDDFE7333D" modified="2017-03-15" version="1">MNRFVELILCLVSLIILVPIMIALMALVFIEDRHSPILKQVRVGKGQVPFTCYKIRTMSVDTAEVASHEASANQITKIGGFLRKTGLDELPQIFNVLMGQMSFVGPRPNLPSQTALIAARDAHKVYDVSPGITGLAQVQGVDMSVPEKLALIDREYVQGRSFKLDCSIIWATIRGKGVGDAIKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QU20</accession>
    <name>A0A1M5QU20_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2323</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17634.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901239.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH17634">
        <property type="protein sequence ID" value="SHH17634"/>
        <property type="gene ID" value="SAMN05444003_2323"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH17634.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="241" mass="27371" checksum="79745EA87526D4E0" modified="2017-03-15" version="1">MMIFCGDSHVRPFEYNVFEGGQDDDVRKYSHLVWKAGATAAGFARKTSRRQLSAAFADACAKVGPKRVCFNLGQVDAEVGFYFATMTKGPLEFEPWLTERYEAFISHAQSFGLSFVVKGLNPSTLISEERLKSYIRRTTIKSFPTRSDFRIAFRSIAPLVSVQQHAERNVIAQSILQQICRRETIPFFDIRDLTMSPSDEGLAKPEFVAPHLDVHLIDSFALRQAYRDEVQSAFRFVRRAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QVT5</accession>
    <name>A0A1M5QVT5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycosyltransferase, GT2 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2350</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18212.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901281.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH18212">
        <property type="protein sequence ID" value="SHH18212"/>
        <property type="gene ID" value="SAMN05444003_2350"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="1">
        <location>
            <begin position="9"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH18212.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="353" mass="40207" checksum="6C78CF32AC39F82A" modified="2017-03-15" version="1">MSSLDWGLVIATKDRFDPLKTCVSLALAQTREPTEVVIVDSSADWKNHKLKVQEIVDQKPNVRFTYLQGDAPSLTVQRNQAAAAASADILFMIDDDSYMFSDCAERIMNIYEADEAAVLAGVQAMDTNLSPLHVKDGSAQEKQEIAFANLRRSSPLVRGILRKVLMASKEEIFIPYDGHYPTWDLPDAVADLPCRPETMFGGFRMTYRRSAVLSEPFDPTLRYYCPGEDLDGSYRISRKGALVTATEAKLFHFSSAAGRLNRTQVAHLWSLNQAVLLRRHAPDQHWARRVYRRKMIRRLTTDFVKDLLMLRFGFPQTKGSWRAWRDSQQAMRLSPEDLSDWYPRRQADIVGAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QX27</accession>
    <name>A0A1M5QX27_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2277</name>
        <name evidence="3" type="ORF">SAMN05444003_2373</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16623.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18652.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901159.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH16623">
        <property type="protein sequence ID" value="SHH16623"/>
        <property type="gene ID" value="SAMN05444003_2277"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH18652">
        <property type="protein sequence ID" value="SHH18652"/>
        <property type="gene ID" value="SAMN05444003_2373"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="48"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="80"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH16623.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH18652.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="156" mass="16737" checksum="27395B582085CC0A" modified="2017-03-15" version="1">MDWILMIAGLAAALVAGVFLSFSDFIMRGLIQAPASQGAAGMVGLNRTVYRSVFMVLLLGLVPVSGGLGLFALWQFEGAAPLLTLVGAVIYLIGVFAVTGMGNVPMNKRLDAMDGQPRETADYWPRYAQRWTRLNHARTFSSGIAAVCWLVAAQTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R094</accession>
    <name>A0A1M5R094_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_2430</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19772.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901399.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2430"/>
    <dbReference type="EnsemblBacteria" id="SHH19772">
        <property type="protein sequence ID" value="SHH19772"/>
        <property type="gene ID" value="SAMN05444003_2430"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035596">
        <property type="term" value="F:methylthiotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006400">
        <property type="term" value="P:tRNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005839">
        <property type="entry name" value="Methylthiotransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020612">
        <property type="entry name" value="Methylthiotransferase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013848">
        <property type="entry name" value="Methylthiotransferase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038135">
        <property type="entry name" value="Methylthiotransferase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006467">
        <property type="entry name" value="MiaB-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00919">
        <property type="entry name" value="UPF0004"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01579">
        <property type="entry name" value="MiaB-like-C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00089">
        <property type="entry name" value="TIGR00089"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51449">
        <property type="entry name" value="MTTASE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01278">
        <property type="entry name" value="MTTASE_RADICAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="MTTase N-terminal" evidence="8">
        <location>
            <begin position="3"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="domain" description="Radical SAM core" evidence="9">
        <location>
            <begin position="134"/>
            <end position="365"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51449"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH19772.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="418" mass="45802" checksum="731475CB9ADBAB23" modified="2017-03-15" version="1">MTKAPIFSNHGCRLNAYETEAMKELASQAGVDSAVVINTCAVTAEAVRKAKQDVRRQRRANPDAKIIVTGCAAQTDPDAFASMTEVDVVVGNTEKMNPATWQGLAPDLIGQTEAVQVDDIMSVNETAGHLIDGFGTRSRAYVQVQNGCDHRCTFCIIPFGRGNSRSVPAGVVVDQIKRLVDRGYNEVVLTGVDLTSWGADLPSVPKLGDLVIRILKLVPDLPRLRISSIDSIEVDDNLMLAIATEDRLMPHLHLSLQHGDDMILKRMKRRHLRDDAIQFCEEAKKVRPAMTFGADIIAGFPTETEAMFENSLRLVSECDLTWLHVFPYSPRPGTPAAKMPQVKGSLIKDRAAQLREAGGIQVGKHLSAQIGKAHDVLMENPRMGRTQQFAEVIFDSDQIESSIVRATIKDVADTQLVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RCE8</accession>
    <name>A0A1M5RCE8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 8">3-deoxy-D-manno-octulosonic acid transferase</fullName>
            <shortName evidence="8">Kdo transferase</shortName>
            <ecNumber evidence="4 8">2.4.99.12</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7 8">Lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_2483</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 8">Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP-Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>CMP-3-deoxy-beta-D-manno-octulosonate + lipid IVA (E. coli) = alpha-Kdo-(2-&gt;6)-lipid IVA + CMP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:28066"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:58603"/>
            <dbReference type="ChEBI" id="CHEBI:60364"/>
            <dbReference type="ChEBI" id="CHEBI:60377"/>
            <dbReference type="ChEBI" id="CHEBI:85987"/>
            <dbReference type="EC" id="2.4.99.12"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 8">Bacterial outer membrane biogenesis; LPS core biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell inner membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the glycosyltransferase group 1 family.</text>
    </comment>
    <dbReference type="EC" id="2.4.99.12" evidence="4 8"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23473.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901558.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2483"/>
    <dbReference type="EnsemblBacteria" id="SHH23473">
        <property type="protein sequence ID" value="SHH23473"/>
        <property type="gene ID" value="SAMN05444003_2483"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00958"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043842">
        <property type="term" value="F:Kdo transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009244">
        <property type="term" value="P:lipopolysaccharide core region biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11720">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007507">
        <property type="entry name" value="Glycos_transf_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038107">
        <property type="entry name" value="Glycos_transf_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039901">
        <property type="entry name" value="Kdotransferase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42755">
        <property type="entry name" value="PTHR42755"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04413">
        <property type="entry name" value="Glycos_transf_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0448">Lipopolysaccharide biosynthesis</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glycos_transf_N" evidence="10">
        <location>
            <begin position="58"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="136"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000183"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003394"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004713"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012621"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00019077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00031445"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU365103"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF04413"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH23473.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="362" mass="38960" checksum="3FA7BF73D871322B" modified="2017-03-15" version="1">MSSDRFAIWVRCNDATKLPVLLELEEALQEDGYPVWFEVTLPNSAGTSMGHPVRSKDVARFLDDLEPRALFWVGGQFDPTTLAAALARNINVVVADAGIAMLPRMGRGWFPGKTRALLSQFSHVFARTSESAEGLTRAGVREDRITASGPLQSSGDVLPHDEEQRHELSQRLGPRPMWVAAHVGEAEVNTLAAAQREASKRAHRLLGIVIPSDNPDGIAHLLRSASFAVTVESDGEMPTESTQFHVASGCETAGLWFRMAPLTVIGGSFDEGARIDPFSAATVGSVSIHGSHYGNFANHFEQLVDANASVICNSPKDLGSAISVMLSADRAAHCARNGWEVTSRGADVMNQIRSHLGSILDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RE28</accession>
    <name>A0A1M5RE28_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">DNA mismatch repair protein MutL</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">mutL</name>
        <name evidence="8" type="ORF">SAMN05444003_2531</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the DNA mismatch repair MutL/HexB family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24448.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901634.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2531"/>
    <dbReference type="EnsemblBacteria" id="SHH24448">
        <property type="protein sequence ID" value="SHH24448"/>
        <property type="gene ID" value="SAMN05444003_2531"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032300">
        <property type="term" value="C:mismatch repair complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140664">
        <property type="term" value="F:ATP-dependent DNA damage sensor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030983">
        <property type="term" value="F:mismatched DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006298">
        <property type="term" value="P:mismatch repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1370.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1540.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00149">
        <property type="entry name" value="DNA_mis_repair"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014762">
        <property type="entry name" value="DNA_mismatch_repair_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020667">
        <property type="entry name" value="DNA_mismatch_repair_MutL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002099">
        <property type="entry name" value="DNA_mismatch_repair_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013507">
        <property type="entry name" value="DNA_mismatch_S5_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038973">
        <property type="entry name" value="MutL/Mlh/Pms"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014790">
        <property type="entry name" value="MutL_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042120">
        <property type="entry name" value="MutL_C_dimsub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042121">
        <property type="entry name" value="MutL_C_regsub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037198">
        <property type="entry name" value="MutL_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10073">
        <property type="entry name" value="PTHR10073"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01119">
        <property type="entry name" value="DNA_mis_repair"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08676">
        <property type="entry name" value="MutL_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01340">
        <property type="entry name" value="DNA_mis_repair"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00853">
        <property type="entry name" value="MutL_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF118116">
        <property type="entry name" value="SSF118116"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00585">
        <property type="entry name" value="mutl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00058">
        <property type="entry name" value="DNA_MISMATCH_REPAIR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0227">DNA damage</keyword>
    <keyword evidence="4 5" id="KW-0234">DNA repair</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA_mis_repair" evidence="7">
        <location>
            <begin position="225"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="domain" description="MutL_C" evidence="6">
        <location>
            <begin position="421"/>
            <end position="564"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM01340"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH24448.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="607" mass="65129" checksum="77345C89A53ACF2B" modified="2017-03-15" version="1">MNLADPQIQARPLIRQLDEAAINRIAAGEVVERPASAVKELVENAIDAGATRIEVAIADGGKTLIRVTDDGCGIAAEDLPLALSRHATSKIDGSDLLNIHSFGFRGEALPSLGAVGRLTITSRTEGDAAEITVAGGAMSAVKPAALSKGTVVELRDLFYATPARLKFLRTDRAENQAITDVVKRLAMAEPFIGFTLVDVSGGDRRVTFRAGAETGDMFDALHGRLRAVLGKEFAENALPIDTERDEFHLTGYAALPTYSRGAAVAQFLFVNGRPVRDKMLLGALRAAYMDVLSRDRHPVAALFIDCDPTLVDVNVHPAKSEVRFRDPGTVRGLIVSGLRHALAEAGHRASTTVATATLGAIQPEKPAARVYQMDRPSFTARSMTFQAQAPAFMEEPSARIEPAPEPVVEEAPLEANPLGAARAQVHENYIIAQTEAGIVIVDQHAAHERLVYEKLKTQMAENGVAAQALLIPEIVEMTENEAASLMEIADDLSRLGLTLEPFGGGAIAVRETPAILGEVNAEAMIRDILDELADQGDSAKVQSKIEAILSRVACHGSIRSGRRMQGAEMNALLRDMEATPLSGQCNHGRPTYVELQLSDIERLFGRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RFZ1</accession>
    <name>A0A1M5RFZ1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Broad specificity phosphatase PhoE</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2542</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901649.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2542"/>
    <dbReference type="EnsemblBacteria" id="SHH24683">
        <property type="protein sequence ID" value="SHH24683"/>
        <property type="gene ID" value="SAMN05444003_2542"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd07067">
        <property type="entry name" value="HP_PGM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013078">
        <property type="entry name" value="His_Pase_superF_clade-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029033">
        <property type="entry name" value="His_PPase_superfam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00300">
        <property type="entry name" value="His_Phos_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00855">
        <property type="entry name" value="PGAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53254">
        <property type="entry name" value="SSF53254"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH24683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="214" mass="23969" checksum="F95596EA48E99652" modified="2017-03-15" version="1">MGEVVLVRHGQANSAATTEEDYDRLSDLGHQQAKWLGAWMKDHEQPFDLAMSGSLLRQKQTLANMGFTETDIDPRLNEIAYYDLSAEMKSVFGLEQLSPDDFVTHFPKTLEAWKNKDIKGHETWEEFNTRVADVMNLARQPGKRVLCVTSGGVIAAIVSQLLDLPIPKFAQIATPIMNTSVHRILVTDHGPMLATFNSAPHLDVADRTYARTVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RHU9</accession>
    <name>A0A1M5RHU9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Acetyl-CoA C-acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2601</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the thiolase-like superfamily. Thiolase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901736.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2601"/>
    <dbReference type="EnsemblBacteria" id="SHH25895">
        <property type="protein sequence ID" value="SHH25895"/>
        <property type="gene ID" value="SAMN05444003_2601"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00751">
        <property type="entry name" value="thiolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002155">
        <property type="entry name" value="Thiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020615">
        <property type="entry name" value="Thiolase_acyl_enz_int_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020610">
        <property type="entry name" value="Thiolase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020617">
        <property type="entry name" value="Thiolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020616">
        <property type="entry name" value="Thiolase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02803">
        <property type="entry name" value="Thiolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00108">
        <property type="entry name" value="Thiolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000429">
        <property type="entry name" value="Ac-CoA_Ac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01930">
        <property type="entry name" value="AcCoA-C-Actrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00098">
        <property type="entry name" value="THIOLASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00099">
        <property type="entry name" value="THIOLASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thiolase_N" evidence="5">
        <location>
            <begin position="4"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="domain" description="Thiolase_C" evidence="6">
        <location>
            <begin position="264"/>
            <end position="384"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-thioester intermediate" evidence="3">
        <location>
            <position position="86"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="3">
        <location>
            <position position="341"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="3">
        <location>
            <position position="371"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000429-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH25895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="385" mass="39972" checksum="8B5E3D5C7098D98D" modified="2017-03-15" version="1">MKPVNIIGAARTAMGGFQGVFSDVDAQTLGGAAIKAAMENAANPAVDEVLMGCVLPAGQGQAPARQAAFLGGLDESIPATTLNKMCGSGMKTVMMAHDQIALGGATTVVAGGMESMTNAPYLMPKMRGGARIGHQQVIDSMFLDGLEDAYDKGRLMGTFAEDCAETFQFTREAQDAYALKSLSNALEAQASGAFETEIAPVTYTTRKGDVTVSEDEQPANARPEKIPQLKPAFRKDGTVTPANASSISDGAAALILSSEDHPNVRARILGHASHAQAPGWFTTAPVPAAQKLLAQIGWTVEEVDLWEVNEAFAVVPMAFMHELNIPSDKVNVNGGACALGHPIGASGARIIVTLLNALEKRGLQRGVAAICIGGGEGTAVAIERG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RKH8</accession>
    <name>A0A1M5RKH8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Ribonuclease 3</fullName>
            <ecNumber evidence="7">3.1.26.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Ribonuclease III</fullName>
            <shortName evidence="7">RNase III</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rnc</name>
        <name evidence="12" type="ORF">SAMN05444003_2640</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>Endonucleolytic cleavage to 5'-phosphomonoester.</text>
            <dbReference type="EC" id="3.1.26.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ribonuclease III family.</text>
    </comment>
    <dbReference type="EC" id="3.1.26.3" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26764.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901801.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2640"/>
    <dbReference type="EnsemblBacteria" id="SHH26764">
        <property type="protein sequence ID" value="SHH26764"/>
        <property type="gene ID" value="SAMN05444003_2640"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004525">
        <property type="term" value="F:ribonuclease III activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006397">
        <property type="term" value="P:mRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006364">
        <property type="term" value="P:rRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008033">
        <property type="term" value="P:tRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00593">
        <property type="entry name" value="RIBOc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1520.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00104">
        <property type="entry name" value="RNase_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014720">
        <property type="entry name" value="dsRBD_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011907">
        <property type="entry name" value="RNase_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000999">
        <property type="entry name" value="RNase_III_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036389">
        <property type="entry name" value="RNase_III_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11207">
        <property type="entry name" value="PTHR11207"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00035">
        <property type="entry name" value="dsrm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14622">
        <property type="entry name" value="Ribonucleas_3_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00358">
        <property type="entry name" value="DSRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00535">
        <property type="entry name" value="RIBOc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69065">
        <property type="entry name" value="SSF69065"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02191">
        <property type="entry name" value="RNaseIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50137">
        <property type="entry name" value="DS_RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50142">
        <property type="entry name" value="RNASE_3_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 7" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 7" id="KW-0507">mRNA processing</keyword>
    <keyword evidence="4 7" id="KW-0540">Nuclease</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7 8" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="7" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="7" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="7" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="RNase III" evidence="11">
        <location>
            <begin position="7"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="domain" description="DRBM" evidence="10">
        <location>
            <begin position="157"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="196"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="active site" evidence="7">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <feature type="active site" evidence="7">
        <location>
            <position position="121"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="45"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="118"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="121"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010183"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50142"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHH26764.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="226" mass="24530" checksum="F16E996A780FA5E2" modified="2017-03-15" version="1">MKLSSDLSAFQARLGYDFRDPSFLVRAVTHSSMVSAHRDDNQRQEFLGDRVLGLVMAEALLSADAAATEGQLAPRFNALVRKEACADVARQIDLGAVLKLGRSEMKSGGRRKEALLADAMEAVIAAVYQDAGFDVARQTILRLWGDRINNVADDARDPKTALQEWAQGKGEPPPSYVEVARSGPDHQPVFTIEARLKSGPSQRATAGSKRQAEQAAAKALLEELTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RLE0</accession>
    <name>A0A1M5RLE0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Hpr(Ser) kinase/phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2650</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26999.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901819.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2650"/>
    <dbReference type="EnsemblBacteria" id="SHH26999">
        <property type="protein sequence ID" value="SHH26999"/>
        <property type="gene ID" value="SAMN05444003_2650"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006109">
        <property type="term" value="P:regulation of carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01918">
        <property type="entry name" value="HprK_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003755">
        <property type="entry name" value="HPr(Ser)_kin/Pase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011104">
        <property type="entry name" value="Hpr_kin/Pase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30305:SF1">
        <property type="entry name" value="PTHR30305:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07475">
        <property type="entry name" value="Hpr_kinase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Hpr_kinase_C" evidence="1">
        <location>
            <begin position="2"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH26999.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="139" mass="14921" checksum="7BF1EC65F81F40EE" modified="2017-03-15" version="1">MEQIVHASCVSVDGKGLLIIGASGSGKSALALQLVTFGADLIADDRTNLTNTEEGVVASSPPAIRGSIEARGMGILQAPTADSAVLRYVVKMDEVENQRLPDEKNLTLMGHTYPLFYRVEGIHFAASLWLLMRHGRSTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RMV3</accession>
    <name>A0A1M5RMV3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 8">DNA-directed RNA polymerase subunit beta</fullName>
            <shortName evidence="6">RNAP subunit beta</shortName>
            <ecNumber evidence="6 8">2.7.7.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">RNA polymerase subunit beta</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Transcriptase subunit beta</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rpoB</name>
        <name evidence="15" type="ORF">SAMN05444003_2677</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 8">DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5 6 8">
            <text>a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate + RNA(n+1)</text>
            <dbReference type="Rhea" id="RHEA:21248"/>
            <dbReference type="Rhea" id="RHEA-COMP:14527"/>
            <dbReference type="Rhea" id="RHEA-COMP:17342"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61557"/>
            <dbReference type="ChEBI" id="CHEBI:140395"/>
            <dbReference type="EC" id="2.7.7.6"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="6 8">The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6 7">Belongs to the RNA polymerase beta chain family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.6" evidence="6 8"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH27624.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901860.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2677"/>
    <dbReference type="EnsemblBacteria" id="SHH27624">
        <property type="protein sequence ID" value="SHH27624"/>
        <property type="gene ID" value="SAMN05444003_2677"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003899">
        <property type="term" value="F:DNA-directed 5'-3' RNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032549">
        <property type="term" value="F:ribonucleoside binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006351">
        <property type="term" value="P:transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00653">
        <property type="entry name" value="RNA_pol_B_RPB2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.270.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01321">
        <property type="entry name" value="RNApol_bact_RpoB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042107">
        <property type="entry name" value="DNA-dir_RNA_pol_bsu_ext_1_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019462">
        <property type="entry name" value="DNA-dir_RNA_pol_bsu_external_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015712">
        <property type="entry name" value="DNA-dir_RNA_pol_su2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007120">
        <property type="entry name" value="DNA-dir_RNAP_su2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037033">
        <property type="entry name" value="DNA-dir_RNAP_su2_hyb_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010243">
        <property type="entry name" value="RNA_pol_bsu_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007121">
        <property type="entry name" value="RNA_pol_bsu_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007644">
        <property type="entry name" value="RNA_pol_bsu_protrusion"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007642">
        <property type="entry name" value="RNA_pol_Rpb2_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037034">
        <property type="entry name" value="RNA_pol_Rpb2_2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007645">
        <property type="entry name" value="RNA_pol_Rpb2_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007641">
        <property type="entry name" value="RNA_pol_Rpb2_7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014724">
        <property type="entry name" value="RNA_pol_RPB2_OB-fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20856">
        <property type="entry name" value="PTHR20856"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04563">
        <property type="entry name" value="RNA_pol_Rpb2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04561">
        <property type="entry name" value="RNA_pol_Rpb2_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04565">
        <property type="entry name" value="RNA_pol_Rpb2_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10385">
        <property type="entry name" value="RNA_pol_Rpb2_45"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00562">
        <property type="entry name" value="RNA_pol_Rpb2_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04560">
        <property type="entry name" value="RNA_pol_Rpb2_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02013">
        <property type="entry name" value="rpoB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01166">
        <property type="entry name" value="RNA_POL_BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 6 8" id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword evidence="3 6 8" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6 8" id="KW-0804">Transcription</keyword>
    <keyword evidence="2 6 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="RNA_pol_Rpb2_1" evidence="12">
        <location>
            <begin position="28"/>
            <end position="518"/>
        </location>
    </feature>
    <feature type="domain" description="RNA_pol_Rpb2_2" evidence="11">
        <location>
            <begin position="180"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="domain" description="RNA_pol_Rpb2_2" evidence="11">
        <location>
            <begin position="368"/>
            <end position="475"/>
        </location>
    </feature>
    <feature type="domain" description="RNA_pol_Rpb2_3" evidence="13">
        <location>
            <begin position="534"/>
            <end position="602"/>
        </location>
    </feature>
    <feature type="domain" description="RNA_pol_Rpb2_45" evidence="14">
        <location>
            <begin position="612"/>
            <end position="677"/>
        </location>
    </feature>
    <feature type="domain" description="RNA_pol_Rpb2_6" evidence="9">
        <location>
            <begin position="738"/>
            <end position="1297"/>
        </location>
    </feature>
    <feature type="domain" description="RNA_pol_Rpb2_7" evidence="10">
        <location>
            <begin position="1299"/>
            <end position="1373"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00024550"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU363031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00562"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF04560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF04561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF04563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF04565"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF10385"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="SHH27624.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="1379" mass="153120" checksum="7CD0D9A85289C637" modified="2017-03-15" version="1">MGQSFLGQKRLRKYYGKIREVLEMPNLIEVQKSSYDLFLRSGDSDTPLDGEGIKGVFQSVFPIKDFNETAVLEFVKYELEKPKYDVEECQQRDMTYSAPLKVTLRLIVFDVDEDTGAKSVKDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFACRIIPYRGSWLDFEFDAKDLVFARIDRRRKLPVTTLLYALGFDQEGIMDAYYDTVDYTLDKKGKAWSTKFFPERVRGTRPAFDLVDAGTGEVIAKAGEKVTPRSVKKLIDEGKVTELLVPYEQIVGKFAAKDIINEENGAIYVEAGDELTLEMDKDGEVIGGTLKDLLDAGIKTIPVLDIDNVNVGSYMRNTMAADKNLNRETALMDIYRVMRPGEPPTVDAASALFDTLFFDSERYDLSAVGRVKMNMRLDLDAEDTMRTLRKEDIVACIKALVELRDGKGDVDDIDHLGNRRVRSVGELMENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHATHYGRMCPIETPEGPNIGLINSLATFARVNKYGFIETPYRKVENGVVTDEVSYMSATEEMRHTVAQANAKLDDSGKFVNDLVSTRQNGEYMLAQNESVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLQAEAPLVGTGIEEVVARDSGAAIMAKRAGIIDQVDASRIVIRATEDLKLGDAGVDIYRMRKFQRSNQNTCINQRPLVKVGQQIKKGEVIADGPSTDMGELALGKNVVVAFMPWNGYNYEDSILISERIVRDDVFTSVHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGAEVGPADILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGDFGTVVEVRVFNRHGVEKDERALQIEREEVERLARDRDDELVILDRNIYARLKGMILGKTAVKGPKGFKANSEITEEVLAELSRGLWWQLALKDEADAQVVEALNEQYEIQKRAMDARFEDKVEKVRRGDDLPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPSRMNVGQILETHMGWAARGLGIQIDDALGEYRRSGDLTPVREAMRIAYGDDVYSEGLEGMGEDDLLEAAGNVTRGVPIATPVFDGAKEGDVNDSLVKAGFDQSGQSILFDGRTGEQFSRPVTVGVKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEVDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RTS8</accession>
    <name>A0A1M5RTS8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Malonyl-CoA/methylmalonyl-CoA synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2692</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH29717.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901932.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2692"/>
    <dbReference type="EnsemblBacteria" id="SHH29717">
        <property type="protein sequence ID" value="SHH29717"/>
        <property type="gene ID" value="SAMN05444003_2692"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="19"/>
            <end position="403"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="412"/>
            <end position="487"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH29717.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="498" mass="53998" checksum="64E824FB680CAF56" modified="2017-03-15" version="1">MTNTLYDALFGIHEENHNTFLICDDGTEVSFAKFVERAAQIAHVLVDCEVGPGDRVLVQAQKLADTLALYAGTVQAGAAYLPLNTAYTTSEVSYFAEDAAPKLIVGDAEGSGDLASIAEGIGAKFLTLSQSGGSLSSAADTKSRYFETVHRNPDDLAGLLYTSGTTGRSKGAMMSHKNLLSNAQALTDLWQITSDDRLIHSLPIFHTHGLFVAMNTSLLAGAAVRLIESFSVDEILSELPKSTLMMGVPTFYTRLLNDDRFKSDLTQSMRLFISGSAPLLAETHLEFEEKTGHRILERYGMTETNMITSNPYDGERIAGTVGYALPGVEVKVVNAETAVAVGSGEIGVIEVRGDNVFHGYWNMPEKTAEEFRDDGFFITGDLAMLGSDGRVTIVGRAKDLIISGGYNIYPKEIEDVLNNCDGILETAVFGIPHPDFGESVVAAIVTESGATVDESVVEKVVARDLARFKHPRRYVTLEELPRNTMGKVQKNVLRETFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RZW3</accession>
    <name>A0A1M5RZW3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2790</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2790"/>
    <dbReference type="EnsemblBacteria" id="SHH31902">
        <property type="protein sequence ID" value="SHH31902"/>
        <property type="gene ID" value="SAMN05444003_2790"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.270.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010707">
        <property type="entry name" value="DUF1285"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023361">
        <property type="entry name" value="DUF1285_beta_roll_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06938">
        <property type="entry name" value="DUF1285"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF029557">
        <property type="entry name" value="UCP029557"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH31902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="198" mass="21780" checksum="66FDAAAC37B10384" modified="2017-03-15" version="1">MTPMAKTMTGQKIVTPSAESLAASARSAKGKGLPPVHLWNPPFCGDLDMRIARDGTWYYLGTPIGRKELVKLFSTIIRKDGDDYFLVTPVEKVGITVDDAPFVAVDFDPDGDALVFETNVGDRVVASSENPIRVLRDEETGEPSPYILVRANLEALIDRKSFYRLVEIGVEENIDGIDWFGVTSKGTFFRIIPAAELA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S061</accession>
    <name>A0A1M5S061_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2785</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH31781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902074.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2785"/>
    <dbReference type="EnsemblBacteria" id="SHH31781">
        <property type="protein sequence ID" value="SHH31781"/>
        <property type="gene ID" value="SAMN05444003_2785"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012115734" evidence="1">
        <location>
            <begin position="18"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH31781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="117" mass="13022" checksum="A56C65DB2CF2CD8A" modified="2017-03-15" version="1">MRVLTASLFLCAGAAVADPVEIVAVDASKSGDTWRFSVTLQHPDTGWDHYADAWEVLDADGNRLGIRELAHPHVNEQPFTRSQSGILIPEDMDVVYIRARENVDGWNETTTEFVLPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S2R6</accession>
    <name>A0A1M5S2R6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2824</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32741.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902128.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH32741">
        <property type="protein sequence ID" value="SHH32741"/>
        <property type="gene ID" value="SAMN05444003_2824"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025495">
        <property type="entry name" value="DUF4386"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14329">
        <property type="entry name" value="DUF4386"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="56"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="95"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="149"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="179"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="208"/>
            <end position="227"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH32741.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="241" mass="26234" checksum="F66294431C2C204A" modified="2017-03-15" version="1">MQSFSDPMSSSYARWTGAFYLGIAIAGGFSIAYVPSQIVVQNDAAATVANIVGKNGLYHLGIAGDVVVMVFELFAVAMLYFMFRNVSKTLSFAAAMARLSMVSVMSAMLFFHAGADLLAQSDQVMTNFSAAQRADLTGLFLEMHRAGVWIWQIFFTMHLLLLGYLVLRSDRFPSIFGYGLMIGGMGYVLDSAFAFAFTDVAWLGTLRIGFLAIVTLSEIGFALWLFIRAPQAPTTLKGAMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S4A6</accession>
    <name>A0A1M5S4A6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2848</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33316.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902170.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH33316">
        <property type="protein sequence ID" value="SHH33316"/>
        <property type="gene ID" value="SAMN05444003_2848"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012974364" evidence="1">
        <location>
            <begin position="22"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH33316.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="158" mass="16904" checksum="EE1C0EC07DB6FA60" modified="2017-03-15" version="1">MFRTTLCVAACLILGHTSLSAQTLDLDAVVEAVEVTADGSLTIRNGENQFSCSVVSKDGSIKVEDCTAISASDLDSLTNDQWKDRIRHAMLDNDCKLSTLGAVADVIEQEAIASGVPAEDVAAAREQIASQVDEVIDRMLWEGQLTVRDGEFALDACK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S699</accession>
    <name>A0A1M5S699_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2876</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH34009.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902211.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH34009">
        <property type="protein sequence ID" value="SHH34009"/>
        <property type="gene ID" value="SAMN05444003_2876"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="33"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH34009.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="62" mass="6794" checksum="B3148A6A9C29BF4A" modified="2017-03-15" version="1">MFLYGSLIVFIIFFTNVALGAFADSAFLGDVGEMLVLFVASLLFVVAILRKEAERAESEDSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SCX4</accession>
    <name>A0A1M5SCX4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Hydroxypyruvate isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2904</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the hyi family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36384.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902290.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2904"/>
    <dbReference type="EnsemblBacteria" id="SHH36384">
        <property type="protein sequence ID" value="SHH36384"/>
        <property type="gene ID" value="SAMN05444003_2904"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026040">
        <property type="entry name" value="HyI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006241">
        <property type="entry name" value="HyI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AP_endonuc_2" evidence="3">
        <location>
            <begin position="21"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="2">
        <location>
            <position position="134"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="2">
        <location>
            <position position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR006241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR006241-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH36384.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="250" mass="27591" checksum="28B46398E603F8DD" modified="2017-03-15" version="1">MPRFSANLGLLWSDLPLPDAIRAAAQAGFDAVEFQWPYDYDPMVVRAALEETGLPLLSLNTERGSKSQGAFGTCAWRNVGNQSVELALSYARAVGAQAIHALPGITAGEEAWQAFEDTLRYACDISEDTTILIEPINPIDVPGYLLDRLVDAIELIERINHPRLKLMFDFYHIGRMHDDPIKQFQDALPHIGHIQFASVPDRGAPDHGALNFDDVFAAIDNAGWSNPIGAEYRPDGPTDATLDWLARHKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SI49</accession>
    <name>A0A1M5SI49_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Serine hydroxymethyltransferase</fullName>
            <shortName evidence="7">SHMT</shortName>
            <shortName evidence="7">Serine methylase</shortName>
            <ecNumber evidence="7">2.1.2.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">glyA</name>
        <name evidence="10" type="ORF">SAMN05444003_2987</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>(6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + glycine + H2O = (6S)-5,6,7,8-tetrahydrofolate + L-serine</text>
            <dbReference type="Rhea" id="RHEA:15481"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="EC" id="2.1.2.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 7 8">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2 7">Amino-acid biosynthesis; glycine biosynthesis; glycine from L-serine: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="7">One-carbon metabolism; tetrahydrofolate interconversion.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the SHMT family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.1.2.1" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38267.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2987"/>
    <dbReference type="EnsemblBacteria" id="SHH38267">
        <property type="protein sequence ID" value="SHH38267"/>
        <property type="gene ID" value="SAMN05444003_2987"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00193"/>
    <dbReference type="UniPathway" id="UPA00288">
        <property type="reaction ID" value="UER01023"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004372">
        <property type="term" value="F:glycine hydroxymethyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019264">
        <property type="term" value="P:glycine biosynthetic process from serine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035999">
        <property type="term" value="P:tetrahydrofolate interconversion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00378">
        <property type="entry name" value="SHMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00051">
        <property type="entry name" value="SHMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001085">
        <property type="entry name" value="Ser_HO-MeTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019798">
        <property type="entry name" value="Ser_HO-MeTrfase_PLP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039429">
        <property type="entry name" value="SHMT-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11680">
        <property type="entry name" value="PTHR11680"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00464">
        <property type="entry name" value="SHMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000412">
        <property type="entry name" value="SHMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00096">
        <property type="entry name" value="SHMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4 7" id="KW-0554">One-carbon metabolism</keyword>
    <keyword evidence="6 7 8" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="SHMT" evidence="9">
        <location>
            <begin position="23"/>
            <end position="399"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="139"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="49"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="69"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="71"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="78"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="79"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="113"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="135"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="190"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="218"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="243"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="250"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="376"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="7 8">
        <location>
            <position position="244"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006376"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00051"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000412-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH38267.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="438" mass="47005" checksum="76159ED02B68A45E" modified="2017-03-15" version="1">MPPEGFPMNATVKDSGFFTEALATRDPEIHAAMQSELGRQRKEIELIASENIVSAAVMEAQGGVMTNKYAEGYPGRRYYGGCQYVDIAENLAIDRAKQLFGCEYANVQPNSGSQANQGVFQALLQPGDTILGMSLDAGGHLTHGAKPNQSGKWFKAVQYGVRQQDSLLDYEQVQELATEHQPKMIIAGGSAIPRIIDFARMREIADSVGAYLLVDMAHFAGLVAAGLYPSPFPHAHVATTTTHKTLRGPRGGMIVTNDEAIAKKCNSAIFPGIQGGPLMHVIAGKAVAFGEALRPEFRVYQEQVVKNAQALADQLMKGGLDIVSGGTDSHLMLVDLRPKGVKGNATEVALGRAHITCNKNGIPFDPEKPMVTSGVRLGTPAGTTRGFTEVEFRQVADWIVEVVDGLAANGEDGNAEVEAKVRAEVEALCDKFPIYPNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SKK0</accession>
    <name>A0A1M5SKK0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Abasic site processing protein</fullName>
            <ecNumber evidence="7">3.4.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_3022</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the SOS response-associated peptidase family.</text>
    </comment>
    <dbReference type="EC" id="3.4.-.-" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH39074.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902469.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH39074">
        <property type="protein sequence ID" value="SHH39074"/>
        <property type="gene ID" value="SAMN05444003_3022"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006974">
        <property type="term" value="P:cellular response to DNA damage stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018142">
        <property type="term" value="P:protein-DNA covalent cross-linking"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1680.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003738">
        <property type="entry name" value="SRAP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036590">
        <property type="entry name" value="SRAP-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13604">
        <property type="entry name" value="PTHR13604"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02586">
        <property type="entry name" value="SRAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143081">
        <property type="entry name" value="SSF143081"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0190">Covalent protein-DNA linkage</keyword>
    <keyword evidence="3" id="KW-0227">DNA damage</keyword>
    <keyword evidence="6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 7" id="KW-0645">Protease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU364100"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH39074.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="222" mass="24684" checksum="3F62D4F449DFF177" modified="2017-03-15" version="1">MCGRMAVTLPHDAMAQVFDANLSNDLPHVPNYNVCPTAQVHAVTSSDGVRRLQPMRWGFIPRWYKKPNGGPLLINARSETIAEKPAFRDACRNRRCLIVADGFYEWKREKDQTPLPWWVTRSDGAPMVFAGVWQNWGAEEEVLTTCAIVTIAANDDMAPIHHRLPVILDEDQWALWLGEEGKGAAALMKSAPEGALSIARVSTAVNSNRATGPELIEPFEDH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SKY7</accession>
    <name>A0A1M5SKY7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3029</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH39216.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH39216">
        <property type="protein sequence ID" value="SHH39216"/>
        <property type="gene ID" value="SAMN05444003_3029"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH39216.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="41" mass="4681" checksum="4662AA6A320D131B" modified="2017-03-15" version="1">MALLFFCGGLALHFHKQLRSDWEFGLQGEITLVGELIFLKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SLE3</accession>
    <name>A0A1M5SLE3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">UPF0262 protein SAMN05444003_3036</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3036</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0262 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH39341.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902484.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3036"/>
    <dbReference type="EnsemblBacteria" id="SHH39341">
        <property type="protein sequence ID" value="SHH39341"/>
        <property type="gene ID" value="SAMN05444003_3036"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00678">
        <property type="entry name" value="UPF0262"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008321">
        <property type="entry name" value="UCP032146"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06793">
        <property type="entry name" value="UPF0262"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF032146">
        <property type="entry name" value="UCP032146"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00678"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH39341.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="159" mass="18194" checksum="F9065630E18BBA15" modified="2017-03-15" version="1">MSRLFEINLDDAGLPPPTPEIEQERKVAIFDLLEDNSFTLPKREDRLIPEGPYRLDLAIRERRLVFALETEAHDAAGEFHLSLGPFRQVVKDYFQICESYFDAVKTLPPSQIETIDMARRGIHNEGARVLQERLEGKADVDIDTARRLFTLICVLHFGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SXQ4</accession>
    <name>A0A1M5SXQ4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Threonine dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_3165</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>L-serine = NH4(+) + pyruvate</text>
            <dbReference type="Rhea" id="RHEA:19169"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="EC" id="4.3.1.17"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>L-threonine = 2-oxobutanoate + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:22108"/>
            <dbReference type="ChEBI" id="CHEBI:16763"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:57926"/>
            <dbReference type="EC" id="4.3.1.19"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the serine/threonine dehydratase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42943.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902747.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3165"/>
    <dbReference type="EnsemblBacteria" id="SHH42943">
        <property type="protein sequence ID" value="SHH42943"/>
        <property type="gene ID" value="SAMN05444003_3165"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003941">
        <property type="term" value="F:L-serine ammonia-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004794">
        <property type="term" value="F:L-threonine ammonia-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006567">
        <property type="term" value="P:threonine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04886">
        <property type="entry name" value="ACT_ThrD-II-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044561">
        <property type="entry name" value="ACT_ThrD-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="PLP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000634">
        <property type="entry name" value="Ser/Thr_deHydtase_PyrdxlP-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005789">
        <property type="entry name" value="Thr_deHydtase_catblc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="Trypto_synt_PLP_dependent"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="SSF53686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01127">
        <property type="entry name" value="ilvA_1Cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00165">
        <property type="entry name" value="DEHYDRATASE_SER_THR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ACT" evidence="6">
        <location>
            <begin position="326"/>
            <end position="403"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010869"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH42943.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="403" mass="42847" checksum="CF0490FAA9A30A77" modified="2017-03-15" version="1">MTLTPDLIHSTYAAIQDATIRTPTVRAARLSLQLGIDLYLKLENLQHTNAFKARGALAKLLTLDEAQRRAGVIACSAGNHAQGVAYHATRLGVASTIVMPVGTPFNKVKRTEEFGAKVVLHGTGFDEGVQFTHDLAAKEELTFIHPFDDPDVAAGQGTVALEMLEQVPDLDSIVVPIGGGGLIAGMAVAAKAVKPDVEVVGSQARVFDAVKAQFDGRSTHFDGATLAEGIAVKEPSAANVAVIKQHVDRIDVATEAEIEEAVFDLLSSEKLVAEGAPGAGLAVIKNNIDHYRGKKVGLVICGGNIDSRLLSTLILRGLVRDGRITRLTFEIDDTPGQLADISRIIGEAGANVVEVIHQRMMQSVSLKQAELDVVIEARDIEHVKEIVGTLRGAGFRLRTDSGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T433</accession>
    <name>A0A1M5T433_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Glycine betaine/proline transport system ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_3226</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45442.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902878.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3226"/>
    <dbReference type="EnsemblBacteria" id="SHH45442">
        <property type="protein sequence ID" value="SHH45442"/>
        <property type="gene ID" value="SAMN05444003_3226"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031460">
        <property type="term" value="P:glycine betaine transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005892">
        <property type="entry name" value="Gly-betaine_transp_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01186">
        <property type="entry name" value="proV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="7"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="63"/>
            <end position="70"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH45442.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="353" mass="39241" checksum="DA74B9279EAA0525" modified="2017-03-15" version="1">MTQDPKVRLRGLYKIFGNDPAEALKFVKQGVGKEQLLVDHQHVLGLQDINVDMQEGEITVVMGLSGSGKSTLIRHLNRLIEPTDGEILLDGEDVMKLSEDGLRQLRQKKMSMVFQKFALLPHRTVLQNAAMAMKVRGEPEADQTREAKKWLDRVGLTGYENHYPVQLSGGMQQRVGIARALTANTDIMLMDEAFSALDPLIRTDMQDLLLELQTELHKTIIFITHDLDEALKLADHLVILKDGRVVQQGEPQEILLEPNDPYIEDFVSDINRARVLKVRSVMEPLNGGKAPKDAAGEVDQNESLEKIIARSGGDTTHTYTVTKDGEPVGTLEMKSLVRALVPRVASEAGARKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T4F6</accession>
    <name>A0A1M5T4F6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Dimethylglycine dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_3234</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GcvT family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45637.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902888.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3234"/>
    <dbReference type="EnsemblBacteria" id="SHH45637">
        <property type="protein sequence ID" value="SHH45637"/>
        <property type="gene ID" value="SAMN05444003_3234"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032503">
        <property type="entry name" value="FAO_M"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013977">
        <property type="entry name" value="GCV_T_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006222">
        <property type="entry name" value="GCV_T_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029043">
        <property type="entry name" value="GcvT/YgfZ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027266">
        <property type="entry name" value="TrmE/GcvT_dom1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16350">
        <property type="entry name" value="FAO_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01571">
        <property type="entry name" value="GCV_T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08669">
        <property type="entry name" value="GCV_T_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101790">
        <property type="entry name" value="SSF101790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAO" evidence="2">
        <location>
            <begin position="6"/>
            <end position="364"/>
        </location>
    </feature>
    <feature type="domain" description="FAO_M" evidence="5">
        <location>
            <begin position="368"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="domain" description="GCV_T" evidence="3">
        <location>
            <begin position="428"/>
            <end position="699"/>
        </location>
    </feature>
    <feature type="domain" description="GCV_T_C" evidence="4">
        <location>
            <begin position="724"/>
            <end position="803"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF08669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF16350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH45637.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="811" mass="89128" checksum="43E0E9633CFA5568" modified="2017-03-15" version="1">MKSRTKVAVIGGGIAGCSTLYHLTQEGWSDVVLIERDELTSGTTWHSAAQVTNFGMNQTMVGLKSHSIALYKKLCDDPEYPVGYHHGDGGIRLANTEAQMQGYRHFSSMARGMGVEFEVIHAEECARRHPLISTENLVGGLWDGEDGDIDPAQLCQALAFHARKAGAEVYRHTAVTTLTQNSDDTWTVETTKGTIDADIVVNACGYRVNEVGAMMGVHHPVASMEHQYFVTEDIPAIIEAGHRMPLLRCPISDYYSRQEKNGLLVGFYEQGCKTWGMNGISPSFANDLCPDDLDRVMDVLEGAFARMPALTEVGIKRVVNGPITYTIDGAPLVGPIPGKRNAFCIIGLRAGVGEGGGHGWLLAQQIVHGEACYDTWCLDPRRFTGHANAELTSLKAIEDYQNEFRFHFPHEHRPAGRPAKTTPLTPILAAEGAEFTIVNGWERVDYIKPTPNFHPILTFDFDEAFDVVAAEVRNVQENVGLCEVNGFNRFEITGTDRHSFLDRMFCGNVTKKEGRVGLGYLLNHRGMVKGEATVANLPASDRGPARTWYGSAAASEFHDMDWLQQHLRDDEDVRISSLTNDQTILVLAGPNARAVVSKCARGDWSADAFPWLSVRECFVGFAPATVMGVSFSGELAYEIHIPNASLYAAYLALREAGKEFDMQLFGARAVDSMRMEKGFLHWKADLLTEFDPFETGLDRFVKLDKADFVGRDALMKRQANAPSKKLVSLQIDATKAPAHPGGSLMDGDKVVGTITSGDWGHRTGLNLAYAFVDTKHSAIGRSMELDLCGDLVKATVIAPCPYDPDFDRIRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L039</accession>
    <name>A0A1M5L039_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Protein tyrosine/serine phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0020</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58325.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0020"/>
    <dbReference type="EnsemblBacteria" id="SHG58325">
        <property type="protein sequence ID" value="SHG58325"/>
        <property type="gene ID" value="SAMN05444003_0020"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004721">
        <property type="term" value="F:phosphoprotein phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029021">
        <property type="entry name" value="Prot-tyrosine_phosphatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026893">
        <property type="entry name" value="Tyr/Ser_Pase_IphP-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13350">
        <property type="entry name" value="Y_phosphatase3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52799">
        <property type="entry name" value="SSF52799"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG58325.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="234" mass="26807" checksum="9EDC22E98682244B" modified="2017-03-15" version="1">MPVDLHRKADQPRQRLLDKDTATVSELASALTDQDRKSAERYVYWSDHGMLRTFWTNFGEVAPGVYRSNQPDHDRLVKYKEMGIKAVLNLRGSPKKPHHILEVRSCEMLGLELKSVALHARAAPQVRHLNTLFEAFDSIQRPFVMHCKSGADRAGLAAVLYRLDQGEDIAQARQELSIKYLHLRHTKTGIQDHFIDTYQGRLKDGPISIRDWIAHEYDAKALTESFAKVKRLPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L210</accession>
    <name>A0A1M5L210_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0026</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898352.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG58463">
        <property type="protein sequence ID" value="SHG58463"/>
        <property type="gene ID" value="SAMN05444003_0026"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="45"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG58463.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="152" mass="17172" checksum="4B002127ACF9A509" modified="2017-03-15" version="1">MTKPDFSEQGPKSWFAIFRAAGGDISLVLFVFALLFFLFDDELSTFETVFAFCYLLSPVWFLAKTWKVIRVRNLGETKTAVVEQIVENLSSGTPTGNGYLIFRTEDGRRAESLNHEIQKLHKVGVGTKIEVFVHGDDAKWIEDVGSKRASYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L2V0</accession>
    <name>A0A1M5L2V0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0055</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59089.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898390.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0055"/>
    <dbReference type="EnsemblBacteria" id="SHG59089">
        <property type="protein sequence ID" value="SHG59089"/>
        <property type="gene ID" value="SAMN05444003_0055"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="47"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="72"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="95"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG59089.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="121" mass="12680" checksum="88BEFD89178EFA5C" modified="2017-03-15" version="1">MRNAAMFLGIIAGLMGIFIGFFGFAYVEFSEAQPDIAGVIGVFENPALIQIASFFAPLLAIAGGAMASSRGLWGGLLMLLSGLCFFYAFGFNVFTFFPIGFAALGGVLAIAARQPDVPTSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L3K7</accession>
    <name>A0A1M5L3K7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Gamma-glutamylputrescine oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0080</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59566.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898422.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0080"/>
    <dbReference type="EnsemblBacteria" id="SHG59566">
        <property type="protein sequence ID" value="SHG59566"/>
        <property type="gene ID" value="SAMN05444003_0080"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAO" evidence="1">
        <location>
            <begin position="38"/>
            <end position="388"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG59566.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="434" mass="46871" checksum="3E9518B4DED14BCC" modified="2017-03-15" version="1">MNPLFRNDRAGEFPDSWYAASADIPAKRTDLKGQHNADVCIIGAGFTGLTAALRLAETGFDVIILDAHRAGFGASGRNGGQVGTGYNWGQEDLAKKMGDGPARAVWDLAEMSKADIAELAGKYAPEARLTPGVAHGAYSQKKIREIHEDCEFQAKTYGYTLNEPLDQTAFNDLVKTKKYRGGALDMGAGHIHPLRYALGLAKAAEAAGVTIYEGSPVHNVTKGDPAKVQTDKGQVMAKHVIYAGNGYLPNIEDKIAAKVMPINSFICATEPLGDKAADVLARDIAVADDKFVVNYYRMSEDNRFLFGGRENYGIGFPKDISTKLIERMEDLFPQLKGVGIDYVWGGTLGITMTRLPCVQRLEPNIWSGAGFSGHGVALSGFTGRVIAEAIAGQEEKFDAMAKLPVPSFPGGSTFRMPLLTLAMTWYALRDRLGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L482</accession>
    <name>A0A1M5L482_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0062</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898401.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG59223">
        <property type="protein sequence ID" value="SHG59223"/>
        <property type="gene ID" value="SAMN05444003_0062"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG59223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="77" mass="8834" checksum="71B6504345489F80" modified="2017-03-15" version="1">MPKYNRQFDLNQDELSLIETALRERSARLVDAKAVAEHGNVSQAHIEDTIRAGEELLGRLHNQKVFYRPKKQVYIGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L9L0</accession>
    <name>A0A1M5L9L0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 11">UDP-N-acetylmuramate--L-alanine ligase</fullName>
            <ecNumber evidence="4 11">6.3.2.8</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">UDP-N-acetylmuramoyl-L-alanine synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">murC</name>
        <name evidence="15" type="ORF">SAMN05444003_0176</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Cell wall formation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>ATP + L-alanine + UDP-N-acetyl-alpha-D-muramate = ADP + H(+) + phosphate + UDP-N-acetyl-alpha-D-muramoyl-L-alanine</text>
            <dbReference type="Rhea" id="RHEA:23372"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="ChEBI" id="CHEBI:70757"/>
            <dbReference type="ChEBI" id="CHEBI:83898"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.8"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 11">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="11">Belongs to the MurCDEF family.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.8" evidence="4 11"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61666.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0176"/>
    <dbReference type="EnsemblBacteria" id="SHG61666">
        <property type="protein sequence ID" value="SHG61666"/>
        <property type="gene ID" value="SAMN05444003_0176"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008763">
        <property type="term" value="F:UDP-N-acetylmuramate-L-alanine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00046">
        <property type="entry name" value="MurC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036565">
        <property type="entry name" value="Mur-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004101">
        <property type="entry name" value="Mur_ligase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036615">
        <property type="entry name" value="Mur_ligase_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013221">
        <property type="entry name" value="Mur_ligase_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000713">
        <property type="entry name" value="Mur_ligase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005758">
        <property type="entry name" value="UDP-N-AcMur_Ala_ligase_MurC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01225">
        <property type="entry name" value="Mur_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02875">
        <property type="entry name" value="Mur_ligase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08245">
        <property type="entry name" value="Mur_ligase_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53244">
        <property type="entry name" value="SSF53244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53623">
        <property type="entry name" value="SSF53623"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01082">
        <property type="entry name" value="murC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9 11" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="6 11" id="KW-0132">Cell division</keyword>
    <keyword evidence="7 11" id="KW-0133">Cell shape</keyword>
    <keyword evidence="10 11" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="5 11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="11 15" id="KW-0436">Ligase</keyword>
    <keyword evidence="11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8 11" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mur_ligase" evidence="12">
        <location>
            <begin position="20"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="Mur_ligase_M" evidence="14">
        <location>
            <begin position="122"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="domain" description="Mur_ligase_C" evidence="13">
        <location>
            <begin position="324"/>
            <end position="409"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="124"/>
            <end position="130"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00046"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF01225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF02875"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF08245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="SHG61666.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="471" mass="50432" checksum="C8FE5C2357257600" modified="2017-03-15" version="1">MDGVVRMNAATKLPLDVGAIHFVGIGGIGMSGIAEVLLSHGYTVQGSDLKATKITDRLKSLGAIVFEGQRAENLEDAEVVVISSAIKPGNAEYDAARARGLPIVRRAEMLAELMRLKSNVAVAGTHGKTTTTTMVAALLDEGGIDPTVINGGIIHAYGSNARMGQGEWMVVEADESDGTFNRLPATIAIVTNIDPEHMEHWKTEEALHQGFLDFVSNIPFYGLAVCCTDDPDVQSLVGKISDRRVVTFGFNAQADVRAVNLTYKAGVAHFDIALQTEGLVIEDCELPMPGDHNVSNALSAVAVARHLGMKVNEIKAALKNFGGVNRRFTKVGEVDGVTIIDDYGHHPVEIAAVLKAARQATEGRVIAVHQPHRYSRLSHHFDEFCACFNDADVVGIAEVFSAGEEPIEGASRDDLVAGLVRHGHRHARSVVDQDDLTRLVREQAASGDMVVCLGAGTISAWANALPEQLKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LAL5</accession>
    <name>A0A1M5LAL5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cobaltochelatase CobT subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0192</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62061.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898562.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0192"/>
    <dbReference type="EnsemblBacteria" id="SHG62061">
        <property type="protein sequence ID" value="SHG62061"/>
        <property type="gene ID" value="SAMN05444003_0192"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006538">
        <property type="entry name" value="CobT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025861">
        <property type="entry name" value="CobT_VWA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06213">
        <property type="entry name" value="CobT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11775">
        <property type="entry name" value="CobT_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF031715">
        <property type="entry name" value="Cob_chel_CobT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00327">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01651">
        <property type="entry name" value="CobT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50234">
        <property type="entry name" value="VWFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VWFA" evidence="2">
        <location>
            <begin position="405"/>
            <end position="625"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="209"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="214"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="257"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG62061.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="625" mass="69390" checksum="75F3D5074DE92359" modified="2017-03-15" version="1">MQNPSDNPADPFKKALAEATKVIADDPELSVSYSVDPAGQTSDTIRLPQVSRRMTRDEVLLARGTADAFALRHKFHDEVTAAKYMPQGQMAKDLYEAMETARIEAVGAKHMPGTAGNIDAKIGNDALRKGYDQIKQASDAPLATAAGYLIRHLATGRDLPSGAENVMNLWRGFIEDHCGGTLESLETILDDQQEFAKFARQMIADLGYADQLGDDPDNIDDDQEDEAEDGEDQEEEPESTGDDESEGEEAEASPEQSQEEQQDASQAQVSMDDQADAEMGEETEMPDGEAPLEPPAPQPISDADPDYRVYSTEFDEEISAEDLAEPAELERLRNYLDQQLEPLKGAVSRLANKLQRRLQAKQNRSWEFDREEGILDAGRLARIVASPTTPLSFKVEKDMEFRDTVVTMLLDNSGSMRGRPISIAAICADVMARTLERCDVKVEILGFTTKAWKGGQSREEWLKDGREATPGRLNDLRHIIYKAADAPWRRTRPNLGLMMKEGLLKENIDGEALEWAHRRMIARPEQRKVLMVISDGAPVDDSTLSVNPANYLEKHLRDVISMVEKRKAVELVAIGIGHDVTRYYERAVTITDVEQLAGAMTEQLAGLFDSDPRSRARVLGMRKAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LMK0</accession>
    <name>A0A1M5LMK0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aspartate/methionine/tyrosine aminotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0383</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66372.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898857.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0383"/>
    <dbReference type="EnsemblBacteria" id="SHG66372">
        <property type="protein sequence ID" value="SHG66372"/>
        <property type="gene ID" value="SAMN05444003_0383"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="1">
        <location>
            <begin position="41"/>
            <end position="384"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG66372.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="389" mass="42363" checksum="3A0DCCBC37EDA28D" modified="2017-03-15" version="1">MSRTTATFAPPVMEARRWLEGVTHPSNRPLLNVSQAAPVDPPPAQLRDAMAQIIVEDAESHLYGPVLGLPELRAQVAQDWSAAYGGSISPDQVAITSGCNQAFAAAIAALCTEGDEVILPTPYYFNHAMWLDMSGVKTVPLTTGEGLLPSAEDADRLITDRARAISLVTPNNPGGVEYPSEVVASFRDLARRRGIALIVDETYRDFDSRTGAPHPLFQDDHWDDTLIHLYSFSKAYRLTGHRVGAVLASPKLLAEMEKFLDTVAICPNQLGQRAALWGMRNLGDWVAGERLEILNRRAAIAEFFPLLEAKGWKLLGCGAYFAYVEHPFDASSADLAPQMVKDAGILLLPGTMFVPEGDPSGAKQFRVAFANVDRSGIEDLFTRLASFTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LQE9</accession>
    <name>A0A1M5LQE9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Cupin_5 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0392</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66563.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898864.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0392"/>
    <dbReference type="EnsemblBacteria" id="SHG66563">
        <property type="protein sequence ID" value="SHG66563"/>
        <property type="gene ID" value="SAMN05444003_0392"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd06121">
        <property type="entry name" value="cupin_YML079wp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009327">
        <property type="entry name" value="Cupin_DUF985"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039935">
        <property type="entry name" value="YML079W-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33387">
        <property type="entry name" value="PTHR33387"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06172">
        <property type="entry name" value="Cupin_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cupin_5" evidence="1">
        <location>
            <begin position="6"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF06172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG66563.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="140" mass="15139" checksum="E7E86C245C2D6635" modified="2017-03-15" version="1">MTADVIIALLDLAPHPEGGHYRQTWIAENDGRAAGTCIYFLLKAGEVSHWHTVDATEIWHYYSGAPIQLRMAETEAGPSAEMILGPDLAAGQRPQGIVPRGHWQSAKSLGEWTLVGCTVSPGFDFAGFHLAEPGFDIPSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LZK3</accession>
    <name>A0A1M5LZK3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 11">Tyrosine recombinase XerD</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">xerD</name>
        <name evidence="15" type="ORF">SAMN05444003_0568</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC-XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.</text>
    </comment>
    <comment type="subunit">
        <text evidence="11">Forms a cyclic heterotetrameric complex composed of two molecules of XerC and two molecules of XerD.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the 'phage' integrase family. XerD subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70522.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899119.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0568"/>
    <dbReference type="EnsemblBacteria" id="SHG70522">
        <property type="protein sequence ID" value="SHG70522"/>
        <property type="gene ID" value="SAMN05444003_0568"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009037">
        <property type="term" value="F:tyrosine-based site-specific recombinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007059">
        <property type="term" value="P:chromosome segregation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01808">
        <property type="entry name" value="Recomb_XerC_XerD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01807">
        <property type="entry name" value="Recomb_XerD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044068">
        <property type="entry name" value="CB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004107">
        <property type="entry name" value="Integrase_SAM-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011932">
        <property type="entry name" value="Recomb_XerD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023009">
        <property type="entry name" value="Tyrosine_recombinase_XerC/XerD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02899">
        <property type="entry name" value="Phage_int_SAM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51900">
        <property type="entry name" value="CB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 11" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="5 11" id="KW-0132">Cell division</keyword>
    <keyword evidence="6 11" id="KW-0159">Chromosome partition</keyword>
    <keyword evidence="4 11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 11" id="KW-0229">DNA integration</keyword>
    <keyword evidence="9 11" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="8 11 12" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Core-binding (CB)" evidence="14">
        <location>
            <begin position="1"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="domain" description="Tyr recombinase" evidence="13">
        <location>
            <begin position="105"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="active site" evidence="11">
        <location>
            <position position="145"/>
        </location>
    </feature>
    <feature type="active site" evidence="11">
        <location>
            <position position="169"/>
        </location>
    </feature>
    <feature type="active site" evidence="11">
        <location>
            <position position="247"/>
        </location>
    </feature>
    <feature type="active site" evidence="11">
        <location>
            <position position="250"/>
        </location>
    </feature>
    <feature type="active site" evidence="11">
        <location>
            <position position="273"/>
        </location>
    </feature>
    <feature type="active site" description="O-(3'-phospho-DNA)-tyrosine intermediate" evidence="11">
        <location>
            <position position="282"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010450"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00015810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01807"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS51900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="SHG70522.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="305" mass="33826" checksum="35D1176322E76E63" modified="2017-03-15" version="1">MSHWIQGFLEAQAAELDAATNTRLAYGRDLANFSDWLERKSLHFATVTQDNIEGYLIECDAEGLSASTRARRLSAIKQLFRFAFEEGLRDDNPAMQIKGPKKAKSLPKTLSVEEVEALLAAARDCGIASLRNTCLMELLYATGMRVSELVELPVSAARGDPRMLLVKGKGGKERMVPLSPPARDALAAYIVERDEKETEKRYKGIPESKFLFPSRGKLGHLTRHRFFGLIKEIAVKAGVSPEKVTPHTLRHAFATHLLAGGADLRAIQTMLGHADVATTEIYTHVLDERLTELVMNHHPLSNKKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M001</accession>
    <name>A0A1M5M001_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">3-dehydroquinate synthase</fullName>
            <shortName evidence="10">DHQS</shortName>
            <ecNumber evidence="10">4.2.3.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">aroB</name>
        <name evidence="12" type="ORF">SAMN05444003_0571</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>7-phospho-2-dehydro-3-deoxy-D-arabino-heptonate = 3-dehydroquinate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:21968"/>
            <dbReference type="ChEBI" id="CHEBI:32364"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58394"/>
            <dbReference type="EC" id="4.2.3.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>Co(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:48828"/>
        </cofactor>
        <cofactor evidence="10">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="10">Binds 1 divalent metal cation per subunit. Can use either Co(2+) or Zn(2+).</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 10">
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="10">Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 2/7.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 10">Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="4.2.3.4" evidence="10"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70578.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899123.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0571"/>
    <dbReference type="EnsemblBacteria" id="SHG70578">
        <property type="protein sequence ID" value="SHG70578"/>
        <property type="gene ID" value="SAMN05444003_0571"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00053">
        <property type="reaction ID" value="UER00085"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003856">
        <property type="term" value="F:3-dehydroquinate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009073">
        <property type="term" value="P:aromatic amino acid family biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008652">
        <property type="term" value="P:cellular amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009423">
        <property type="term" value="P:chorismate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00110">
        <property type="entry name" value="DHQ_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016037">
        <property type="entry name" value="DHQ_synth_AroB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030963">
        <property type="entry name" value="DHQ_synth_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030960">
        <property type="entry name" value="DHQS/DOIS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01761">
        <property type="entry name" value="DHQ_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001455">
        <property type="entry name" value="DHQ_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01357">
        <property type="entry name" value="aroB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7 10" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="9 10" id="KW-0170">Cobalt</keyword>
    <keyword evidence="10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="8 10" id="KW-0456">Lyase</keyword>
    <keyword evidence="3 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 10" id="KW-0520">NAD</keyword>
    <keyword evidence="4 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 10" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="DHQ_synthase" evidence="11">
        <location>
            <begin position="70"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="107"/>
            <end position="111"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="131"/>
            <end position="132"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="144"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="153"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="186"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="249"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="267"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001911"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005412"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF01761"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHG70578.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="370" mass="39515" checksum="62AAF699C99F31E0" modified="2017-03-15" version="1">MTETVRVNLPNREYDIIIGDGVLQSAGDRIAAMGGRKQIAIITDETVAGHHLDGLQSSLASAGLTFDVLRLPAGEKTKGWAHLEQSVEWLLEQKVERGDVIIAFGGGVIGDLVGFAAAILRRGVRFVQIPTTLLAQVDSSVGGKTAINSASGKNLIGAFHQPSLVLADTALLSTLSQRDFLAGYGEVVKYGLLGDADFFEWLETNADAIANREMDALIYAVKRSCEMKADIVERDETEQGDRALLNLGHTFCHALEAATGYSNRLLHGEGVVVGCGLAFELSARLGLCSQEDPSRVRAHLKAMGMKVDVSDIDGDLPSAEALLDLMGQDKKVVAGTLRFILARGIGDAFITSDVPRDAVLSVLSDALDMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M0E1</accession>
    <name>A0A1M5M0E1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Peptide/nickel transport system ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_0574</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899125.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0574"/>
    <dbReference type="EnsemblBacteria" id="SHG70640">
        <property type="protein sequence ID" value="SHG70640"/>
        <property type="gene ID" value="SAMN05444003_0574"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015833">
        <property type="term" value="P:peptide transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013563">
        <property type="entry name" value="Oligopep_ABC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08352">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01727">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="6">
        <location>
            <begin position="11"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="6">
        <location>
            <begin position="356"/>
            <end position="610"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="47"/>
            <end position="54"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="401"/>
            <end position="408"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG70640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="695" mass="76316" checksum="460A57CAE83B4789" modified="2017-03-15" version="1">MEKQDYDGPILEIDKLSISFFTRLREIPAVMDFSATVMPGEALGLVGESGCGKSTVALGVMQDLGVNGRIVGGSIKFKGRDLNTMSQDELRDIRGSEIAMIYQEPMASLNPAMKIGKQLAEVPMIHEGVSEDEAMKRALEVVTDVKLPDPQRILKSYPHQLSGGQQQRIVIAMALMSKPSLLILDEPTTALDVTVEAAVVELVKDLGKKYGTSMLFISHNLGLVLETCDRICVMYSGEAVERGSIEDVFDKMQHPYTQALFRSIPLPGADKNARPLVAIPGNFPLPHERPQGCNFGPRCDYFEEGRCDADMSIPMEIIEGHDRHQSRCLKFKEIDWNAPIEVGEQKEKAAAGDVVLKMDNLKKYYEVAANALFGGGDKKVVKANETLSFEARESETLAIVGESGCGKSTFAKVLMGLETATDGQIILDNRSIGDTPIEDRDTKTVADVQMVFQNPFDTLNPSMTVGRQIIRALEIFGVGDSDADRKDRMLKLLDLVKLPRAFADRMPRQLSGGQKQRVGIARAFAGDARIVVADEPVSALDVSVQAAVTDLLMEIQREHKTTLLFISHDLSIVRYLSDRVMVMYLGHVVELGTTDQVFAPPYHPYTEALLSAVPIADTSVEKKHIVLEGDIPSAMNPPSGCPFQTRCRWKDKVAGGLCEKEVPAVRMMADGHQIKCHLSDDALAEMDQVIKIAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M5M5</accession>
    <name>A0A1M5M5M5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Phosphate-specific transport system accessory protein PhoU</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0638</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Plays a role in the regulation of phosphate uptake.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the PhoU family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899209.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0638"/>
    <dbReference type="EnsemblBacteria" id="SHG72249">
        <property type="protein sequence ID" value="SHG72249"/>
        <property type="gene ID" value="SAMN05444003_0638"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030643">
        <property type="term" value="P:cellular phosphate ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045936">
        <property type="term" value="P:negative regulation of phosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006817">
        <property type="term" value="P:phosphate ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.220">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028366">
        <property type="entry name" value="P_transport_PhoU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038078">
        <property type="entry name" value="PhoU-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026022">
        <property type="entry name" value="PhoU_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42930">
        <property type="entry name" value="PTHR42930"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01895">
        <property type="entry name" value="PhoU"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003107">
        <property type="entry name" value="PhoU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02135">
        <property type="entry name" value="phoU_full"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 3" id="KW-0592">Phosphate transport</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="domain" description="PhoU" evidence="4">
        <location>
            <begin position="20"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="domain" description="PhoU" evidence="4">
        <location>
            <begin position="124"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008107"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022592"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRNR" id="PIRNR003107"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01895"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG72249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="234" mass="26257" checksum="29CFBD27014848BA" modified="2017-03-15" version="1">MNEHISSAYDRDLEALITLIMKMGGLVEDAILNAAQSLEKRDVELAEAVRNGDKAIDALEVEINDEAARVIALRAPVSKDLRSILTVLRLAASLERIGDYSKNIAKRTSVLADMQPINGADAALRRMAKEVQVMLKDTLDAYIRGDAELAEDVRQRDQEVDQMYNALFREFLTFMMEDPRHITACMHLHFMAKNVERMGDLTTNMAEQVIYLVTGEMPDEARPKSDKTAFIGEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M7I2</accession>
    <name>A0A1M5M7I2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, XRE family with cupin sensor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0665</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG72899.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899259.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG72899">
        <property type="protein sequence ID" value="SHG72899"/>
        <property type="gene ID" value="SAMN05444003_0665"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013096">
        <property type="entry name" value="Cupin_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07883">
        <property type="entry name" value="Cupin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="31"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG72899.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="207" mass="23174" checksum="5161DE6B024BE329" modified="2017-03-15" version="1">MTNDDPTAIIRIARENGEAEVAAPLDLGARVRDLRKAKQWTLEQAANQAGLARSTLSKIENGQMSPTYEALKKLAVGLDISVPQLFTAPSKGQINGRLSVTKNDETSVQMTTTYEHELLAESLTRKKMLPYRARIRARDMSDFDGWIRHDGEEFLYVLTGVVKLYTEFYEAIELRRGDSAYYDATMGHNVVSVSQDDATILWVTSLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M860</accession>
    <name>A0A1M5M860_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">NifU homolog involved in Fe-S cluster formation</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0690</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73467.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899303.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0690"/>
    <dbReference type="EnsemblBacteria" id="SHG73467">
        <property type="protein sequence ID" value="SHG73467"/>
        <property type="gene ID" value="SAMN05444003_0690"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016226">
        <property type="term" value="P:iron-sulfur cluster assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06664">
        <property type="entry name" value="IscU_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002871">
        <property type="entry name" value="NIF_FeS_clus_asmbl_NifU_N"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG73467.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="147" mass="15523" checksum="65F65715A7399BA0" modified="2017-03-15" version="1">MSDTDLMKLYSQRILALAADMPHTERLDAPTATAKKRSPLCGSTVTVDIALSDGVVIDYGQDVKACALGQAAAAVVGANIIGLTEDQIQTGRDQLFAMLKEDGNAPSAPFSDLEVLQPAKDYKNRHASIMLAFDATLDALENAKAAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MAM4</accession>
    <name>A0A1M5MAM4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Gamma-glutamyl phosphate reductase</fullName>
            <shortName evidence="7">GPR</shortName>
            <ecNumber evidence="7">1.2.1.41</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Glutamate-5-semialdehyde dehydrogenase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Glutamyl-gamma-semialdehyde dehydrogenase</fullName>
            <shortName evidence="7">GSA dehydrogenase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">proA</name>
        <name evidence="9" type="ORF">SAMN05444003_0728</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>L-glutamate 5-semialdehyde + NADP(+) + phosphate = H(+) + L-glutamyl 5-phosphate + NADPH</text>
            <dbReference type="Rhea" id="RHEA:19541"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58066"/>
            <dbReference type="ChEBI" id="CHEBI:58274"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.2.1.41"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 7">Amino-acid biosynthesis; L-proline biosynthesis; L-glutamate 5-semialdehyde from L-glutamate: step 2/2.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the gamma-glutamyl phosphate reductase family.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.41" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899375.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0728"/>
    <dbReference type="EnsemblBacteria" id="SHG74306">
        <property type="protein sequence ID" value="SHG74306"/>
        <property type="gene ID" value="SAMN05444003_0728"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00098">
        <property type="reaction ID" value="UER00360"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004350">
        <property type="term" value="F:glutamate-5-semialdehyde dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055129">
        <property type="term" value="P:L-proline biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd07079">
        <property type="entry name" value="ALDH_F18-19_ProA-GPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00412">
        <property type="entry name" value="ProA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020593">
        <property type="entry name" value="G-glutamylP_reductase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012134">
        <property type="entry name" value="Glu-5-SA_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000965">
        <property type="entry name" value="GPR_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000151">
        <property type="entry name" value="GPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00407">
        <property type="entry name" value="proA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01223">
        <property type="entry name" value="PROA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 7" id="KW-0521">NADP</keyword>
    <keyword evidence="6 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4 7" id="KW-0641">Proline biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="8">
        <location>
            <begin position="4"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004985"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022650"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00412"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG74306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="418" mass="44391" checksum="9082D93FFCB49FB3" modified="2017-03-15" version="1">MTDMTPDLMNRLGAAAKAAARELATASAEAKTAALNAAADAVWVRRGEIIEANGKDLEFGRGKGLSEAMMDRLMLDETRIQGIVDGLRNVAAQDDPIGAVTDEWTQPTGLHIQRVRTPIGVIGVIYESRPNVTADAGALCLKSGNAVILRGGSESFHSSTVIHDCMVEGLRAAGLPEAAVQLVPTRDRQAVKDMLQATDYIDVIVPRGGKGLVGLVQKEARVPVFAHLEGICHIYVDATADLEKTRQVVLNAKTRRTGICGSAECLLIDQDFWDHHGDILIRDLIAAGVEVRASGAAQIDGTVEAQADDFGHEFLDMIIAAKIVDGVAAAVAHIREFGSNHTDAIMTEDDTVADIFFRNLESAILMRNASTQFADGGEFGMGAEIGIATGKLHARGPVGAVQLTSFKYLVTGDGTTRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MC08</accession>
    <name>A0A1M5MC08_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Flavin-dependent oxidoreductase, luciferase family (Includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0751</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74806.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899410.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0751"/>
    <dbReference type="EnsemblBacteria" id="SHG74806">
        <property type="protein sequence ID" value="SHG74806"/>
        <property type="gene ID" value="SAMN05444003_0751"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011251">
        <property type="entry name" value="Luciferase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036661">
        <property type="entry name" value="Luciferase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00296">
        <property type="entry name" value="Bac_luciferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51679">
        <property type="entry name" value="SSF51679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_luciferase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="313"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG74806.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="344" mass="39161" checksum="1B575A702B2791C2" modified="2017-03-15" version="1">MEFSLFAHMERLTNDQPQDELHDQFIELCKMADDAGMRAVWTGEHHGMDFTIAPNPLMSLVNLAHHTKNVRLGTGTIIAPFWHPIKLAGEAASADLMTGGRIELGIARGAYSYEYERLMPGLDAWEAGQRMREITPLLPQLWKGDCAHEGEFFNFPSSTSAPKPVQKDGPPIWIAARDPNSHEFGVHNGFNIQVTPLWQGMEEIETLMGRFNDACDSYDGLRPKIMLLHHTYVGADAEDVERGSQELSRFYNYFGAWFQNKRDVRQGQIDPLTDEDIANNKMMSKDNLARDLTIGTATEVTDRIKKYEDLGYDEYSFWIDSGMSFERKRASLARFIDDVMPKFQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MD35</accession>
    <name>A0A1M5MD35_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0771</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75250.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899432.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG75250">
        <property type="protein sequence ID" value="SHG75250"/>
        <property type="gene ID" value="SAMN05444003_0771"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012612580" evidence="1">
        <location>
            <begin position="25"/>
            <end position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG75250.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="179" mass="20304" checksum="ED46A405AAF05DAE" modified="2017-03-15" version="1">MSTGRFIFALFALCAGTLPLKSLASQLQNDGFYAATKVNDKLLDSSIISLLNTYELLTEDFVTFFDSSKDLELLDFYFASGANYIQDQRINRNALDVFDSTAASDIMRLNTNSETCYVQSIRLPTNQRLTIAIHNEDDDNAEDIFRCLVAGLWYFNQGSLLDYDAEKWRNSFVNLIRGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MEK1</accession>
    <name>A0A1M5MEK1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Formyl-CoA transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0789</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75666.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0789"/>
    <dbReference type="EnsemblBacteria" id="SHG75666">
        <property type="protein sequence ID" value="SHG75666"/>
        <property type="gene ID" value="SAMN05444003_0789"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003673">
        <property type="entry name" value="CoA-Trfase_fam_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044855">
        <property type="entry name" value="CoA-Trfase_III_dom3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023606">
        <property type="entry name" value="CoA-Trfase_III_dom_1_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02515">
        <property type="entry name" value="CoA_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89796">
        <property type="entry name" value="SSF89796"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="371"/>
            <end position="402"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG75666.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="402" mass="42484" checksum="FEB805A5B51EDECC" modified="2017-03-15" version="1">MAHSNSPKALDGILVLDLSRILAGPTATQMLGDLGATVIKIENPKTGGDDTRRWGPPYVDTPDGQSDLSAYFLSANRNKFSVAADLSTPEGQALVKEIASQADILVENYKTGGLAKYGLDYDSLSALNPALVYCSISGFGQTGPNKHLPGYDLMAQGYGGIMSITGEPEGAPMKVGVGIADVMCGMYASIGILAALRHAEATGEGQQIDLALVDSQMAWLINEGTNTLASGKAPKRRGNGHPNIVPYDVFATLDGHIILAVGNDRQFESLCGALGRTDLAEDPDFTTNPLRISHRDRLTAEISVTFSGKTSDNILKSLHDVGVPAGPIHKIDEALSSDQAEARGGVVQIEAATSTGYVELLGNPLKFSKTPVSYGKAPPRFGEDTDKLDQLLTDRNVSKSSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MIB4</accession>
    <name>A0A1M5MIB4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MOSC domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0831</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76669.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899521.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0831"/>
    <dbReference type="EnsemblBacteria" id="SHG76669">
        <property type="protein sequence ID" value="SHG76669"/>
        <property type="gene ID" value="SAMN05444003_0831"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030151">
        <property type="term" value="F:molybdenum ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005302">
        <property type="entry name" value="MoCF_Sase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011037">
        <property type="entry name" value="Pyrv_Knase-like_insert_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03473">
        <property type="entry name" value="MOSC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50800">
        <property type="entry name" value="SSF50800"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51340">
        <property type="entry name" value="MOSC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MOSC" evidence="1">
        <location>
            <begin position="23"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51340"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG76669.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="147" mass="15650" checksum="3AA7FF9B425B6245" modified="2017-03-15" version="1">MANHAAAVRVEWIGLRAERLAEIDVVHVAEVNAAGLVGDHGRAGKRAVTMIQAEHLLVIAALTARETVAPEELRRNFVISGINLQALRKAPLHIGECTLQIEGPCPPCSRLEKVLGHGGYNAMRGHGGWYASVVSGGQIKIGDAVRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MII8</accession>
    <name>A0A1M5MII8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, LacI family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0854</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0854"/>
    <dbReference type="EnsemblBacteria" id="SHG77244">
        <property type="protein sequence ID" value="SHG77244"/>
        <property type="gene ID" value="SAMN05444003_0854"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01392">
        <property type="entry name" value="HTH_LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000843">
        <property type="entry name" value="HTH_LacI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046335">
        <property type="entry name" value="LacI/GalR-like_sensor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00356">
        <property type="entry name" value="LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13377">
        <property type="entry name" value="Peripla_BP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00354">
        <property type="entry name" value="HTH_LACI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50932">
        <property type="entry name" value="HTH_LACI_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH lacI-type" evidence="4">
        <location>
            <begin position="17"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG77244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="358" mass="39419" checksum="18522DABF8DAAB15" modified="2017-03-15" version="1">MPGIAKRITVLKALWTMNLKELSETLGLSQTTVSRALNGYPEVSEATRTRVEMAARKFNYSPSSRAKGLATGKALAIGHVIPTRSKHEMVNPVFGDFIAGAGEIYAQNGYEMILSIVNADASEETVYRGLQSRRAVDGVVVHGPRMADDRIPLLNEIGLPFVVHGRASEISEPYEWLDVNNKHAFERATQFLIDLGHRRIALINGLEVMDFARRRRLGYEAALNSEDLDIDESLIFSEEMTEEYGYETTRTILDRSDAPTAVVASSMIIALGVRRAIEERGLVMGKDLSIVTHDDMLSYLQNGGDVPIFTATRSSVREAGRKAAEMLLQKISNPTTPPQNILFEAELTVGRSTGPAPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MKG4</accession>
    <name>A0A1M5MKG4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Permease of the drug/metabolite transporter (DMT) superfamily</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0885</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77944.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG77944">
        <property type="protein sequence ID" value="SHG77944"/>
        <property type="gene ID" value="SAMN05444003_0885"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="52"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="84"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="111"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="139"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="169"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="200"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="230"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="259"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="283"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="24"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="167"/>
            <end position="302"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG77944.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="307" mass="33043" checksum="CA8ED82683822D38" modified="2017-03-15" version="1">MVDTAPFPIAHAGMDKKSNIDLFGAAALTGFALLLAFNQVVIKVTNGGIQPVFFAGIRSVGAVFCLWLWLKWRGIPLQYSRETAGWGVITGVIFGFEFLCLFMALDLTTVGRTGVIFYSMPVWLALIAHFTLPDDRLTPIKSLGLVLAVAGVAWALLDRDGGEASVWGDLAALGAALGWAITAMLAKASPLRKERPEMQLFWQVLISGPVLIVASLFFGDLIRDLQPIHIAGLIFQIVVVVTAGFVFWLWLLSIYPASGVASFSFLSPVLAVFLGWLMLGEEVGSSLIVALVLVAIGIVLINRPSKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MLQ8</accession>
    <name>A0A1M5MLQ8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Serine acetyltransferase</fullName>
            <ecNumber evidence="4">2.3.1.30</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_0896</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>acetyl-CoA + L-serine = CoA + O-acetyl-L-serine</text>
            <dbReference type="Rhea" id="RHEA:24560"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:58340"/>
            <dbReference type="EC" id="2.3.1.30"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-acid biosynthesis; L-cysteine biosynthesis; L-cysteine from L-serine: step 1/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the transferase hexapeptide repeat family.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.30" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78201.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899608.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0896"/>
    <dbReference type="EnsemblBacteria" id="SHG78201">
        <property type="protein sequence ID" value="SHG78201"/>
        <property type="gene ID" value="SAMN05444003_0896"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00136">
        <property type="reaction ID" value="UER00199"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009001">
        <property type="term" value="F:serine O-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006535">
        <property type="term" value="P:cysteine biosynthetic process from serine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03354">
        <property type="entry name" value="LbH_SAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001451">
        <property type="entry name" value="Hexapep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018357">
        <property type="entry name" value="Hexapep_transf_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045304">
        <property type="entry name" value="LbH_SAT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010493">
        <property type="entry name" value="Ser_AcTrfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042122">
        <property type="entry name" value="Ser_AcTrfase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005881">
        <property type="entry name" value="Ser_O-AcTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00132">
        <property type="entry name" value="Hexapep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06426">
        <property type="entry name" value="SATase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00971">
        <property type="entry name" value="SATase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="SSF51161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01172">
        <property type="entry name" value="cysE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00101">
        <property type="entry name" value="HEXAPEP_TRANSFERASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0677">Repeat</keyword>
    <keyword evidence="6 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="SATase_N" evidence="9">
        <location>
            <begin position="14"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004876"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00018522"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM00971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG78201.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="268" mass="28817" checksum="6D87F5ADA4F480A8" modified="2017-03-15" version="1">MAIAHTSIREVDPVWQRICDEGREAIEQEPLVGALVHAGILNHSSFENALGYRIAMKLASTEMSEQTMRDIATAAYEAEPELAMAARADLVATYDRDPACHRFLQPLLFFKGFQAIQAYRLGHWLWENGKKDLSYFIQMRTSEVFGIDIHPAARIGKGIMIDHAHSIVVGETAVVGDNVSMLHSVTLGGTGKEDDDRHPKIGNGVLIGAGAKVLGNIHVGDCSRVAAGSVVLTDVPPKKTVAGVPAKIVGEAGCSQPAITMDQLLGDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MMV5</accession>
    <name>A0A1M5MMV5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Alcohol dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0916</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the zinc-containing alcohol dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899636.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0916"/>
    <dbReference type="EnsemblBacteria" id="SHG78638">
        <property type="protein sequence ID" value="SHG78638"/>
        <property type="gene ID" value="SAMN05444003_0916"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016616">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002328">
        <property type="entry name" value="ADH_Zn_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00059">
        <property type="entry name" value="ADH_ZINC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="PKS_ER" evidence="3">
        <location>
            <begin position="8"/>
            <end position="339"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU361277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG78638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="344" mass="36199" checksum="A1BC76C49C781021" modified="2017-03-15" version="1">MRAAVVRDFNQDLSIETVPDPICPDNGVVLKVEACGVCRSDYHGWTGGHPKVKNGSILGHEYCGTVVEAGPNAVRKVGERLIAPFILSCGSCPACQTGVSNTCADQIVPGFGTPGAYAEFVAAPYDHNLVTLPDSLSPALAAGLGCRVTTAWHALTDRAHAQAGDWVAVHGTGGIGLSVLLLAKMLGCQVVVVDVVDEKLQHAKEHGADATVNAAREDAVTAILDITNGGAQVSIEALGIQQTTNASIECLATLGRHVQIGMPSGDGRMDVNMRAIYMKQLSFFGTRGMPSWKYPRLLDLIERGSVDISPMVAREVRLEDASAELRAMGGPTSPGTAVITEFRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MN43</accession>
    <name>A0A1M5MN43_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 6">30S ribosomal protein S18</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rpsR</name>
        <name evidence="9" type="ORF">SAMN05444003_0908</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 6">Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Part of the 30S ribosomal subunit. Forms a tight heterodimer with protein S6.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 6 7">Belongs to the bacterial ribosomal protein bS18 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78462.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899623.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0908"/>
    <dbReference type="EnsemblBacteria" id="SHG78462">
        <property type="protein sequence ID" value="SHG78462"/>
        <property type="gene ID" value="SAMN05444003_0908"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00270">
        <property type="entry name" value="Ribosomal_S18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001648">
        <property type="entry name" value="Ribosomal_S18"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018275">
        <property type="entry name" value="Ribosomal_S18_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036870">
        <property type="entry name" value="Ribosomal_S18_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13479">
        <property type="entry name" value="PTHR13479"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01084">
        <property type="entry name" value="Ribosomal_S18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00974">
        <property type="entry name" value="RIBOSOMALS18"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46911">
        <property type="entry name" value="SSF46911"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00165">
        <property type="entry name" value="S18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00057">
        <property type="entry name" value="RIBOSOMAL_S18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 6 7" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="6" id="KW-0699">rRNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005589"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00015697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003910"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG78462.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="75" mass="8661" checksum="E909C3C1E60F3E59" modified="2017-03-15" version="1">MASKPFFRRRKSDPFEGENAPKIDYKDTRLLQRYISERGKIVPARITAVGAKNQRKLAQAIKRARFLALLPYAVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MRI5</accession>
    <name>A0A1M5MRI5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Putative pre-16S rRNA nuclease</fullName>
            <ecNumber evidence="3">3.1.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0974</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the YqgF HJR family.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899720.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0974"/>
    <dbReference type="EnsemblBacteria" id="SHG79816">
        <property type="protein sequence ID" value="SHG79816"/>
        <property type="gene ID" value="SAMN05444003_0974"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004518">
        <property type="term" value="F:nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000967">
        <property type="term" value="P:rRNA 5'-end processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd16964">
        <property type="entry name" value="YqgF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00651">
        <property type="entry name" value="Nuclease_YqgF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005227">
        <property type="entry name" value="YqgF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006641">
        <property type="entry name" value="YqgF/RNaseH-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037027">
        <property type="entry name" value="YqgF/RNaseH-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33317">
        <property type="entry name" value="PTHR33317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03652">
        <property type="entry name" value="RuvX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00732">
        <property type="entry name" value="YqgFc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00250">
        <property type="entry name" value="RNAse_H_YqgF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0690">Ribosome biogenesis</keyword>
    <feature type="domain" description="YqgFc" evidence="4">
        <location>
            <begin position="17"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG79816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="156" mass="16832" checksum="B8D17CC0894FAFC6" modified="2017-03-15" version="1">MTFDDVEGFQSTLPAFGPIAGLDLGTATIGVAVSDGSRQIATPVETIKRKKFGIDAGKLLSLLKERGVHGIVLGLPMNMDGSEGPRCQATRAFARNLEKLTDLPITFWDERLSTVAAERALLEADTSRKRRAEVIDHVAASYILQGALDRMAHLKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MRT4</accession>
    <name>A0A1M5MRT4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 6">Superoxide dismutase</fullName>
            <ecNumber evidence="2 6">1.15.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_0963</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Destroys radicals which are normally produced within the cells and which are toxic to biological systems.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>2 H(+) + 2 superoxide = H2O2 + O2</text>
            <dbReference type="Rhea" id="RHEA:20696"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:16240"/>
            <dbReference type="ChEBI" id="CHEBI:18421"/>
            <dbReference type="EC" id="1.15.1.1"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the iron/manganese superoxide dismutase family.</text>
    </comment>
    <dbReference type="EC" id="1.15.1.1" evidence="2 6"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79599.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899709.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0963"/>
    <dbReference type="EnsemblBacteria" id="SHG79599">
        <property type="protein sequence ID" value="SHG79599"/>
        <property type="gene ID" value="SAMN05444003_0963"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004784">
        <property type="term" value="F:superoxide dismutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.990">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.55.40.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001189">
        <property type="entry name" value="Mn/Fe_SOD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019833">
        <property type="entry name" value="Mn/Fe_SOD_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019832">
        <property type="entry name" value="Mn/Fe_SOD_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019831">
        <property type="entry name" value="Mn/Fe_SOD_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036324">
        <property type="entry name" value="Mn/Fe_SOD_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036314">
        <property type="entry name" value="SOD_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02777">
        <property type="entry name" value="Sod_Fe_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00081">
        <property type="entry name" value="Sod_Fe_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000349">
        <property type="entry name" value="SODismutase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01703">
        <property type="entry name" value="MNSODISMTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46609">
        <property type="entry name" value="SSF46609"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54719">
        <property type="entry name" value="SSF54719"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00088">
        <property type="entry name" value="SOD_MN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sod_Fe_N" evidence="7">
        <location>
            <begin position="3"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="domain" description="Sod_Fe_C" evidence="8">
        <location>
            <begin position="98"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="28"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="82"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="164"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="168"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012682"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000349-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000414"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG79599.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="199" mass="21917" checksum="70A966A91C25FA59" modified="2017-03-15" version="1">MAFSLPDLPYAHDALASKGMSAETLEFHHDLHHNAYVTNGNAAIAGTEWEGKSLEEIIVGTYDASAVAQNGIFNNISQLWNHNQFWEMMGPGDNAMPGELETALVENFGSVDEFKSQFSAAGAGQFGSGWCWLVKNADGSLAVTKTENGVNPLCFGQTALLGCDVWEHSYYIDFRNKRPVYLSNFLDNLVNWENVASRM</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MUV2</accession>
    <name>A0A1M5MUV2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phosphoglycolate phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1029</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80932.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899769.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1029"/>
    <dbReference type="EnsemblBacteria" id="SHG80932">
        <property type="protein sequence ID" value="SHG80932"/>
        <property type="gene ID" value="SAMN05444003_1029"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006439">
        <property type="entry name" value="HAD-SF_hydro_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041492">
        <property type="entry name" value="HAD_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023198">
        <property type="entry name" value="PGP-like_dom2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13419">
        <property type="entry name" value="HAD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00413">
        <property type="entry name" value="HADHALOGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01549">
        <property type="entry name" value="HAD-SF-IA-v1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG80932.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="220" mass="23582" checksum="8B2BBBF00AEC7269" modified="2017-03-15" version="1">MRTVVFDLDGTLADTSGDLIAAANSCFRGLGLGDVLDPVKDAGTALRGGRAMLRLGFEKTGSHGEDEVDRQYPILLEAYARDLDRHTVLYPGAMEAVRQLKADGYVVAICTNKPEALAEALMRRLGVREEFDALLGADSLPVRKPDPTHLFETAKRAGGDPKRMLLVGDSDTDRNTSANAGVPSILVTFGPSGEDMAALEPEALLDDYADLPRIVKDLIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MXU3</accession>
    <name>A0A1M5MXU3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Serine-type D-Ala-D-Ala carboxypeptidase</fullName>
            <ecNumber evidence="3">3.4.16.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">SAMN05444003_1067</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">DSM 28715</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the peptidase S11 family.</text>
    </comment>
    <dbReference type="EC" id="3.4.16.4" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81729.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899803.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1067"/>
    <dbReference type="EnsemblBacteria" id="SHG81729">
        <property type="protein sequence ID" value="SHG81729"/>
        <property type="gene ID" value="SAMN05444003_1067"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009002">
        <property type="term" value="F:serine-type D-Ala-D-Ala carboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.410.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018044">
        <property type="entry name" value="Peptidase_S11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012907">
        <property type="entry name" value="Peptidase_S11_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037167">
        <property type="entry name" value="Peptidase_S11_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001967">
        <property type="entry name" value="Peptidase_S11_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07943">
        <property type="entry name" value="PBP5_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00768">
        <property type="entry name" value="Peptidase_S11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00725">
        <property type="entry name" value="DADACBPTASE1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00936">
        <property type="entry name" value="PBP5_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="14" id="KW-0121">Carboxypeptidase</keyword>
    <keyword evidence="6" id="KW-0133">Cell shape</keyword>
    <keyword evidence="8" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="4" id="KW-0645">Protease</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 12" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="12">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009912458" description="Serine-type D-Ala-D-Ala carboxypeptidase" evidence="12">
        <location>
            <begin position="27"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="domain" description="PBP5_C" evidence="13">
        <location>
            <begin position="273"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-ester intermediate" evidence="9">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="9">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="118"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="223"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007164"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR618044-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR618044-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU004016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="SMART" id="SM00936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="SHG81729.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="391" mass="41451" checksum="4DC0DB668F8E515A" modified="2017-03-15" version="1">MPRLTRLVISSIAIGLLWAVSAAAQAFDTKATAAYVLDQTTGTVLMSKNADEPLPPASMSKLMTIYMAFEAVADGRLGITERLPVSEHAATYGGSTMFLDTTDRVSVEDLLRGVIVLSGNDASAVLGEAIGGTEPAFARMMTERAQQMGLTNSTFKNSNGWPAVGHRMSMRDLGVLADRLITDFPTYYPLFNEQTFAFDGRAPANSNNRNPLLGLGIGADGLKTGHTQEAGYGLVGSAKQGDRRVIFVLTGLDSEAERAEEAEKIVNWAFRQFAQKDVVRAGSQIAHADVWMGDAPTVGLTVAEDLSLLLPVINQDAVDAQVVYDGPLQAPISAGERVGDLIISVDGLPDTTVPLVATDDVAEGGFETRLRVAAQVLLEKIGALGAEDNPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N3K2</accession>
    <name>A0A1M5N3K2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Fructose-1,6-bisphosphatase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_1170</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>beta-D-fructose 1,6-bisphosphate + H2O = beta-D-fructose 6-phosphate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:11064"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:32966"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57634"/>
            <dbReference type="EC" id="3.1.3.11"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 3">Belongs to the FBPase class 2 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899890.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1170"/>
    <dbReference type="EnsemblBacteria" id="SHG84156">
        <property type="protein sequence ID" value="SHG84156"/>
        <property type="gene ID" value="SAMN05444003_1170"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042132">
        <property type="term" value="F:fructose 1,6-bisphosphate 1-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006094">
        <property type="term" value="P:gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006071">
        <property type="term" value="P:glycerol metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01516">
        <property type="entry name" value="FBPase_glpX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004464">
        <property type="entry name" value="FBPase_class-2/SBPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30447">
        <property type="entry name" value="PTHR30447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03320">
        <property type="entry name" value="FBPase_glpX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004532">
        <property type="entry name" value="GlpX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00330">
        <property type="entry name" value="glpX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="4" id="KW-0464">Manganese</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="95"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="172"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="194"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="40"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="64"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="92"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="95"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="126"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="219"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="222"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRNR" id="PIRNR004532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR004532-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR004532-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG84156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="321" mass="33619" checksum="5539781DE5B9C49E" modified="2017-03-15" version="1">MSPTIDFNDRALSLALARVSEAAAIACAPLIGRGDEKAADQAAVDAMRTQLNSLDISGVVVIGEGERDEAPMLYIGEEVGTGTGPGVDIALDPLEGTTLTAKDMPNALAVIAMGPRGSMLHAPDVYMEKLAVGPGYRPGVVTLDMSPAERVSALASAKGCSTNDITVCVLERPRHEDMIEEIRSTGAAIRLITDGDVAGVMHCAEAATTGIDMYMGLGGAPEGVLAAAALKCMGGQIFGRLTFRNDDERGRAEKAGISNFDRVYTRDDMVTGDVIFAATGVTDGSLLPGIKREVGAVTAETVLMRSKTGSVRRMTYRNPTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N400</accession>
    <name>A0A1M5N400_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Single-stranded-DNA-specific exonuclease RecJ</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_1171</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the RecJ family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84177.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899891.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1171"/>
    <dbReference type="EnsemblBacteria" id="SHG84177">
        <property type="protein sequence ID" value="SHG84177"/>
        <property type="gene ID" value="SAMN05444003_1171"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008409">
        <property type="term" value="F:5'-3' exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001667">
        <property type="entry name" value="DDH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038763">
        <property type="entry name" value="DHH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003156">
        <property type="entry name" value="DHHA1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004610">
        <property type="entry name" value="RecJ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041122">
        <property type="entry name" value="RecJ_OB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01368">
        <property type="entry name" value="DHH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02272">
        <property type="entry name" value="DHHA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17768">
        <property type="entry name" value="RecJ_OB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64182">
        <property type="entry name" value="SSF64182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00644">
        <property type="entry name" value="recJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5 10" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DHH" evidence="7">
        <location>
            <begin position="97"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="domain" description="DHHA1" evidence="8">
        <location>
            <begin position="334"/>
            <end position="457"/>
        </location>
    </feature>
    <feature type="domain" description="RecJ_OB" evidence="9">
        <location>
            <begin position="477"/>
            <end position="582"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="327"/>
            <end position="357"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00019841"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF17768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG84177.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="587" mass="62511" checksum="2DFCA1E10E7321FE" modified="2017-03-15" version="1">MSDPQHPPAFLNVDASLTDRRWVGPTGAEDRLSNAMEQATGLPAPLCRTLVRRGVEPQEAEGFLEPKLRELLPDPRSLKDMERAASRFLTAVRERQNIAIFADYDVDGGSSAALLIDWLRQMGRRATLYIPDRIDEGYGPNDEAMSALARDHDLIVCVDCGTLSHGPIDAAKGADVIVLDHHLGGETLPDAKAIVNPNRQDEDGDLAHLCAAAVTFLMLVETNRQLREAGHQGPDLIAMLDLVALATVADVAPLIGVNRALVRQGLSVMARRERIGLTALADEAGMDSAPNSYHLGFLLGPRVNAGGRIGKADLGARLLSTENAQEAKDIAARLDELNKERREIENQVRDLALEQATDRGLDAPLVWAAGEGWHPGVVGIVASRLKEATNRPAIVIGLVGDEGKGSGRSVSGIDLGASIQRLAAEGLLIKGGGHKMAAGLTVERGKLDAAMDRLADLLDKQGAGQLGPSDLTLNGILMPGAVTVDLIEQLEQAGPFGAGAPAPRFAFPDCQILFAKEVGTNHLKVAFGDGMGARLDAIAFNTVDGPMGQELLNHGGARFHLAGRLDVNVWQGRKSPQLRLEDAARAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N445</accession>
    <name>A0A1M5N445_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">RNA polymerase, sigma subunit, ECF family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1173</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84212.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899892.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG84212">
        <property type="protein sequence ID" value="SHG84212"/>
        <property type="gene ID" value="SAMN05444003_1173"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="1">
        <location>
            <begin position="26"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="2">
        <location>
            <begin position="117"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG84212.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="416" mass="46613" checksum="31D796B60B7510E1" modified="2017-03-15" version="1">MSPSLSPERIIERTIREERGRILASLVGSLNDLHLAEDCLQDAVLSAMSHWQRNGLPRSPAGWLITVARRKALDKLRRDQVFSKKQAEIALLLELESRNLDEVMFDAIPDSRLELIFICCHPSLDTKSQVALTLRALGGLSTEEIASAFLDTPQAMQQRITRAKRKIAQEKIPFVVPERSELPERTKTVLSVIYLIFNEGYSATQGASAHRKDLTDEAIRLARILMGLLPNDTEVAGLLALMLLHDSRRVARTDHDGNLVPLKEQNRKRWNQSKIVEGTEILERVLPLKRIGPYQLQAAISGVHAMSKTWEQTDWSEIAALYDLLFDIQPSPVVRINQAVAISYASSPEDGLKLLRDVSEVAKIQKYQPYFAALGDLQERAGQITQARENYLQAVNLSENAAEQEFLNAKIAQLGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N4H4</accession>
    <name>A0A1M5N4H4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transcriptional regulator, TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_1167</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899887.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1167"/>
    <dbReference type="EnsemblBacteria" id="SHG84079">
        <property type="protein sequence ID" value="SHG84079"/>
        <property type="gene ID" value="SAMN05444003_1167"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041490">
        <property type="entry name" value="KstR2_TetR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17932">
        <property type="entry name" value="TetR_C_24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="5">
        <location>
            <begin position="10"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="4">
        <location>
            <begin position="33"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG84079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="198" mass="22354" checksum="971B68F1809EF06F" modified="2017-03-15" version="1">MARRRGSHSDITGPKIREAALRLIAQHGCAAVSMRKIAEDVGLQVGALYNYTPDKQSLLFDLMETHMVDLLAELGKLPALDGPIEQLDQFVRFHITYHLPRRDEVFVSYMELRNLSPENFERIQALRSQYEGALEAILEAGEASDDFTFTDRHITTLSIIAQLTGITNWYREDGRLTIDEVATIYCDLIQRSVASAQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N5Q3</accession>
    <name>A0A1M5N5Q3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1201</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84841.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899916.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG84841">
        <property type="protein sequence ID" value="SHG84841"/>
        <property type="gene ID" value="SAMN05444003_1201"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022584">
        <property type="entry name" value="DUF2937"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11157">
        <property type="entry name" value="DUF2937"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="132"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="161"/>
            <end position="193"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG84841.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="193" mass="21226" checksum="09E6C17FA74DC40B" modified="2017-03-15" version="1">MIKTLCLIAGVSGAVVASQYPAFTQQYIQRLGGQVDALTQVVLDFDRSAVEAGLGREEALQQMTGTPFLQARQTDMRATFARHIALQEHLNVLRAATPLERLVMPHRIADEETFAATWGDFSPALPVTRAGAYAAGFGGFVGYVALLVLLTPFRTLYRRKPKQAQTHRAQPALRPPEPEFAPPARPRLMGETR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N769</accession>
    <name>A0A1M5N769_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1225</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85446.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899935.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG85446">
        <property type="protein sequence ID" value="SHG85446"/>
        <property type="gene ID" value="SAMN05444003_1225"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="32"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="56"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG85446.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="75" mass="8306" checksum="546934EBBE159FB2" modified="2017-03-15" version="1">MEAINRVDAVKWVATMVQLIGYGLTGLNYTPWNIYAFVIGIILWFAVGVMWKDRAIMVVHVGAFISLVGGYLNAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NAT0</accession>
    <name>A0A1M5NAT0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">tRNA-specific adenosine deaminase</fullName>
            <ecNumber evidence="3">3.5.4.33</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">tadA</name>
        <name evidence="5" type="ORF">SAMN05444003_1257</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>adenosine(34) in tRNA + H(+) + H2O = inosine(34) in tRNA + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:43168"/>
            <dbReference type="Rhea" id="RHEA-COMP:10373"/>
            <dbReference type="Rhea" id="RHEA-COMP:10374"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:74411"/>
            <dbReference type="ChEBI" id="CHEBI:82852"/>
            <dbReference type="EC" id="3.5.4.33"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="3">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the cytidine and deoxycytidylate deaminase family.</text>
    </comment>
    <dbReference type="EC" id="3.5.4.33" evidence="3"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86103.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899962.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1257"/>
    <dbReference type="EnsemblBacteria" id="SHG86103">
        <property type="protein sequence ID" value="SHG86103"/>
        <property type="gene ID" value="SAMN05444003_1257"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052717">
        <property type="term" value="F:tRNA-specific adenosine-34 deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002100">
        <property type="term" value="P:tRNA wobble adenosine to inosine editing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00972">
        <property type="entry name" value="tRNA_aden_deaminase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016192">
        <property type="entry name" value="APOBEC/CMP_deaminase_Zn-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002125">
        <property type="entry name" value="CMP_dCMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016193">
        <property type="entry name" value="Cytidine_deaminase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028883">
        <property type="entry name" value="tRNA_aden_deaminase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14437">
        <property type="entry name" value="MafB19-deam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53927">
        <property type="entry name" value="SSF53927"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00903">
        <property type="entry name" value="CYT_DCMP_DEAMINASES_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51747">
        <property type="entry name" value="CYT_DCMP_DEAMINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0819">tRNA processing</keyword>
    <keyword evidence="2 3" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="CMP/dCMP-type deaminase" evidence="4">
        <location>
            <begin position="1"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="3">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="52"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="82"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="85"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00972"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG86103.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="148" mass="15787" checksum="AABFF9E01BDAF286" modified="2017-03-15" version="1">MAFKSYMDVALEEARAAANRGEVPVGAVIVGPEGIIAQAGNQTRELNDPTAHAEVLAIRAACQALGQERLSGCDLYVTLEPCPMCAAAISNARIGRLYYGASDPKSGGVAQGPRVFSHSQCHHVPEVYDGIAAENSEQLLKEFFAERR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NBQ3</accession>
    <name>A0A1M5NBQ3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 10">Cytochrome c oxidase assembly protein CtaG</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">ctaG</name>
        <name evidence="11" type="ORF">SAMN05444003_1307</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 10">Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 10">Cell inner membrane</location>
            <topology evidence="2 10">Single-pass type II membrane protein</topology>
            <orientation evidence="2 10">Periplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 10">Belongs to the COX11/CtaG family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86927.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900009.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1307"/>
    <dbReference type="EnsemblBacteria" id="SHG86927">
        <property type="protein sequence ID" value="SHG86927"/>
        <property type="gene ID" value="SAMN05444003_1307"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008535">
        <property type="term" value="P:respiratory chain complex IV assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.370.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00155">
        <property type="entry name" value="CtaG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023471">
        <property type="entry name" value="CtaG/Cox11_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007533">
        <property type="entry name" value="Cyt_c_oxidase_assmbl_CtaG"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04442">
        <property type="entry name" value="CtaG_Cox11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005413">
        <property type="entry name" value="COX11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110111">
        <property type="entry name" value="SSF110111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 10" id="KW-0186">Copper</keyword>
    <keyword evidence="9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 10" id="KW-0735">Signal-anchor</keyword>
    <keyword evidence="5 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="topological domain" description="Cytoplasmic" evidence="10">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="topological domain" description="Periplasmic" evidence="10">
        <location>
            <begin position="32"/>
            <end position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009620"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00015384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG86927.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="206" mass="22976" checksum="1CF980C538569E07" modified="2017-03-15" version="1">MRLFPNVTGPKRTLFQTLSVVFVMGALAWASVPFYDWFCRVTGFGGATNVAEDTTGVVLDETITVRFDASLERDMPWTFKPVEREMEIRIGELGLAFYEANNPSDVPVAGQAAYNVAPYQAGAFFDKIECFCFVEQVLQPGETVLMPVSFFIDPEIVDDYEGQYIHTITLSYTFYEIDLPEDEMQQAALGAESALTTNGQTAIEQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NE18</accession>
    <name>A0A1M5NE18_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ubiquinone/menaquinone biosynthesis C-methylase UbiE</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1363</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87856.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900054.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1363"/>
    <dbReference type="EnsemblBacteria" id="SHG87856">
        <property type="protein sequence ID" value="SHG87856"/>
        <property type="gene ID" value="SAMN05444003_1363"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025714">
        <property type="entry name" value="Methyltranfer_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13847">
        <property type="entry name" value="Methyltransf_31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0830">Ubiquinone</keyword>
    <feature type="domain" description="Methyltranfer_dom" evidence="1">
        <location>
            <begin position="40"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG87856.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="204" mass="22196" checksum="487705C677AD323E" modified="2017-03-15" version="1">MTTAAFWDKAAEKYAKDPISDMESYTQTLDIMKDLLQPQHRVLEIGCGTGSTALELAPQVDRYIGTDISSNMVEIATEKLADTNLDHLSFQVAQAHDLPGTGHDVVLALNLLHLVENMGETLGSIYDALPSGGIFISKSALLGEGSWYLGPMIALMRAVGKAPFVARFSEAELIRMMEHAGFTITQTIKQDGMAPRLFVVAQKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NHF7</accession>
    <name>A0A1M5NHF7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Dimethylglycine dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_1417</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GcvT family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG88875.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900103.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG88875">
        <property type="protein sequence ID" value="SHG88875"/>
        <property type="gene ID" value="SAMN05444003_1417"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032503">
        <property type="entry name" value="FAO_M"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013977">
        <property type="entry name" value="GCV_T_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006222">
        <property type="entry name" value="GCV_T_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029043">
        <property type="entry name" value="GcvT/YgfZ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027266">
        <property type="entry name" value="TrmE/GcvT_dom1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16350">
        <property type="entry name" value="FAO_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01571">
        <property type="entry name" value="GCV_T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08669">
        <property type="entry name" value="GCV_T_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101790">
        <property type="entry name" value="SSF101790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAO" evidence="2">
        <location>
            <begin position="7"/>
            <end position="381"/>
        </location>
    </feature>
    <feature type="domain" description="FAO_M" evidence="5">
        <location>
            <begin position="384"/>
            <end position="438"/>
        </location>
    </feature>
    <feature type="domain" description="GCV_T" evidence="3">
        <location>
            <begin position="442"/>
            <end position="721"/>
        </location>
    </feature>
    <feature type="domain" description="GCV_T_C" evidence="4">
        <location>
            <begin position="746"/>
            <end position="824"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF08669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF16350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG88875.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="834" mass="93339" checksum="BE1E2746FC0AC569" modified="2017-03-15" version="1">MKTQVKALVVGGGAVGTSIAYHLAKAGWDDVMLLERDELTSGSTWHAAGLLPLFNMSYATTHIHKYSVDFYKTLEEETGLNAGFAVVGNLRMAQTQERMDEYMLYASTAETCDVPYEWLTPEQIKERWPLIRTEDLKGALYHNTDGYINPADVTQAMAKGARQRGVMIERKWQADGFHWNGTHWEVTCTKMVEKGGNLVPSEEQIVITAEHVVTASGNHAQTTAKKLGIKIPAIPVEHQFIVMDQDPELVKYRAEGGQEHPVIRDADAQSYVREERGGWILGVYEKNAPACFENGVPDSFRADLFPLDLERIEEQYMAMIHRVPSCEESGLKDDFNGPICYTPDGNPLVGPAPGLRNMWLAEGFSFGITAAGGTGYYLAQMMVEGEAEIDMASLDPKRYSQNWMTTEFAARKNEECYDHVYILHHPDEERPACRPLRTAPAYDRQKARGAQFGWVNGWERPNYYGPLDAPDNFDEESRSFRRGAWWQYAVDEAKAIREGVGLIDATAFTKHVVKGLGATAFLDWFTCNKLPKVGRINLTYALTAAGTTRTEYTIVRNGENNYYLVSAGAWTEYDADFMCKAAEDKADEFGYIEIQDVTTQWGVFAIAGPKSRDVLNEVIKDADPATALSNKRFPWLSARKIELGMCPVNAIRVAYTGELGWELHHPIEMQNYLFDLLEAAGEKHGMKLVGARAQNWLRQEKSYRAFGTELGRDATPQEADLPRFIDLEKEFHGKDAMVATGVRSKCVTLLIDGPNDADPWGREALYHDGTRVGRLTSGGYSVAFEKSIGMGYVPPALAEVGTKLKVKMQDKLWDAEIVQDSPYDPKNEVIRKDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NIB7</accession>
    <name>A0A1M5NIB7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Bifunctional uridylyltransferase/uridylyl-removing enzyme</fullName>
            <shortName evidence="7">UTase/UR</shortName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Bifunctional [protein-PII] modification enzyme</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Bifunctional nitrogen sensor protein</fullName>
        </alternativeName>
        <domain>
            <recommendedName>
                <fullName evidence="7">[Protein-PII] uridylyltransferase</fullName>
                <shortName evidence="7">PII uridylyltransferase</shortName>
                <shortName evidence="7">UTase</shortName>
                <ecNumber evidence="7">2.7.7.59</ecNumber>
            </recommendedName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="7">[Protein-PII]-UMP uridylyl-removing enzyme</fullName>
                <shortName evidence="7">UR</shortName>
                <ecNumber evidence="7">3.1.4.-</ecNumber>
            </recommendedName>
        </domain>
    </protein>
    <gene>
        <name evidence="7" type="primary">glnD</name>
        <name evidence="10" type="ORF">SAMN05444003_1433</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>[protein-PII]-L-tyrosine + UTP = [protein-PII]-uridylyl-L-tyrosine + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:13673"/>
            <dbReference type="Rhea" id="RHEA-COMP:12147"/>
            <dbReference type="Rhea" id="RHEA-COMP:12148"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:46398"/>
            <dbReference type="ChEBI" id="CHEBI:46858"/>
            <dbReference type="ChEBI" id="CHEBI:90602"/>
            <dbReference type="EC" id="2.7.7.59"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>[protein-PII]-uridylyl-L-tyrosine + H2O = [protein-PII]-L-tyrosine + H(+) + UMP</text>
            <dbReference type="Rhea" id="RHEA:48600"/>
            <dbReference type="Rhea" id="RHEA-COMP:12147"/>
            <dbReference type="Rhea" id="RHEA-COMP:12148"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:46858"/>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
            <dbReference type="ChEBI" id="CHEBI:90602"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="activity regulation">
        <text evidence="7">Uridylyltransferase (UTase) activity is inhibited by glutamine, while glutamine activates uridylyl-removing (UR) activity.</text>
    </comment>
    <comment type="domain">
        <text evidence="7">Has four distinct domains: an N-terminal nucleotidyltransferase (NT) domain responsible for UTase activity, a central HD domain that encodes UR activity, and two C-terminal ACT domains that seem to have a role in glutamine sensing.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the GlnD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.59" evidence="7"/>
    <dbReference type="EC" id="3.1.4.-" evidence="7"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89207.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1433"/>
    <dbReference type="EnsemblBacteria" id="SHG89207">
        <property type="protein sequence ID" value="SHG89207"/>
        <property type="gene ID" value="SAMN05444003_1433"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008882">
        <property type="term" value="F:[glutamate-ammonia-ligase] adenylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008773">
        <property type="term" value="F:[protein-PII] uridylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008081">
        <property type="term" value="F:phosphoric diester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006808">
        <property type="term" value="P:regulation of nitrogen utilization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00277">
        <property type="entry name" value="PII_uridylyl_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005190">
        <property type="entry name" value="GlnE_rpt_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006674">
        <property type="entry name" value="HD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013546">
        <property type="entry name" value="PII_UdlTrfase/GS_AdlTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010043">
        <property type="entry name" value="UTase/UR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47320">
        <property type="entry name" value="PTHR47320"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01842">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08335">
        <property type="entry name" value="GlnD_UR_UTase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03710">
        <property type="entry name" value="GlnE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01966">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006288">
        <property type="entry name" value="PII_uridyltransf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00471">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01693">
        <property type="entry name" value="UTase_glnD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51831">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6 7" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="2 7 10" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="1 7 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HD" evidence="9">
        <location>
            <begin position="506"/>
            <end position="628"/>
        </location>
    </feature>
    <feature type="domain" description="ACT" evidence="8">
        <location>
            <begin position="744"/>
            <end position="820"/>
        </location>
    </feature>
    <feature type="domain" description="ACT" evidence="8">
        <location>
            <begin position="854"/>
            <end position="929"/>
        </location>
    </feature>
    <feature type="region of interest" description="Uridylyltransferase" evidence="7">
        <location>
            <begin position="1"/>
            <end position="389"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51831"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHG89207.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="932" mass="105613" checksum="D256A521CD3642AD" modified="2017-03-15" version="1">MNQHQDPSEALASKAESAAGPLICAPEALFNKAAVSERLHRHIEAATSQKEQRKAIVNVLSEAMANGRSAIKDAFLASPLAAQQTTTSYSWLTDHVVSAVIETVKTHLHPLPNPTDAERLSVIAVGGYGRGEMAPFSDVDLLFLTPYKITPWAESVIESSLYILWDLKLKVGHASRTVKDCVRLAKEDFTIRTSLVEYRFLTGDEALAKSLGETLWKDLFRNTASEFIDAKLAERSERHRKQGGQRYVVEPNVKEGKGGLRDLQSLYWINKYIHRVQDASELVKFDVFTEDEFKTFRDAHNFLWAVRCHLHLIANRAVDQLTFDMQVAVAEAMGYKDKAGRRAVEVFMQDYFRHATRVGELTRIFLTAQEDARKKSAPMLERLFTRRRRAKPPYAIKQNRITIAQPKAFLSDKLNMLRLFEEALRTGTLIHPDAMRLIAANLHLIDQDMRDSKEANKIFLDLMLKHGNPERGLRRMNELGVLSAFVPEFEHIVAMMQFNMYHHYTVDEHIIQCISVLSSIEHGELKEDLPIASGILERGVNRRVLYVALLLHDIAKGRPEDHSILGAQMARKIAPRFGLNKKEYETVEWLIRYHLLMSDVAQKRDISEPRTVRGFANAVKSVERLDLLTVLTVCDIRGVGPDTWNNWKAVLIRNLYGATRDALENGLEDVNRESREAEAKRQLREALSGWDAKELRKEVGRHYGPYWQGLPPAAQVVFANLLKDLDDAEVAIDLMLDQDRDATRACFAMVDHPGLFSRVVGALALVGANIVDARTYTTKDGYATAVFWVQDADGAPYEEARLPRLRTMIQKTLKGEVVARDALKDRDKIKKRERAFKVPTNITFDNDGSEIYTIIEVDTRDRPGLLFDLTRTLAHNNVYIASAVIATYGEQVVDTFYVKDMVGLKFYSDSKRTALEKKLRDAIAQGFERATA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NJ65</accession>
    <name>A0A1M5NJ65_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1449</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89560.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900133.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1449"/>
    <dbReference type="EnsemblBacteria" id="SHG89560">
        <property type="protein sequence ID" value="SHG89560"/>
        <property type="gene ID" value="SAMN05444003_1449"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019088">
        <property type="entry name" value="CHP02186-rel_TM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09608">
        <property type="entry name" value="Alph_Pro_TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012251694" evidence="2">
        <location>
            <begin position="18"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="221"/>
            <end position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG89560.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="248" mass="27234" checksum="9A9E0F0C77AE6B12" modified="2017-03-15" version="1">MLRLLALLLVLAIPLQAEEIVSDLSQDEVSINATFDGSDILVFGAIRRDAPEPEGELGVIITVAGPDQHVTIRRKERKFGIWVNSDEVEIEQAPSFYAVASNAPLEDILRPSEDLKNRVTTSQAVRQVGANVLDSGSFAKALVRIKSDQDLYQLNEGAVSLSEDTLFSTSIEMPANLTEGDYATRIMLTRDGTIVDTHETVIPVQKVGIERLLYNMSRENAFWYGIMSLAIAIAAGWLASAAFSLIRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NJB8</accession>
    <name>A0A1M5NJB8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="12">Bifunctional adenosylcobalamin biosynthesis protein</fullName>
            <ecNumber evidence="12">2.7.1.156</ecNumber>
            <ecNumber evidence="12">2.7.7.62</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">SAMN05444003_1425</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 12">Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 12">
            <text>adenosylcob(III)inamide + ATP = adenosylcob(III)inamide phosphate + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:15769"/>
            <dbReference type="ChEBI" id="CHEBI:2480"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58502"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.156"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>adenosylcob(III)inamide + GTP = adenosylcob(III)inamide phosphate + GDP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:15765"/>
            <dbReference type="ChEBI" id="CHEBI:2480"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:58189"/>
            <dbReference type="ChEBI" id="CHEBI:58502"/>
            <dbReference type="EC" id="2.7.1.156"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 12">
            <text>adenosylcob(III)inamide phosphate + GTP + H(+) = adenosylcob(III)inamide-GDP + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:22712"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:58502"/>
            <dbReference type="ChEBI" id="CHEBI:60487"/>
            <dbReference type="EC" id="2.7.7.62"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="6 12">Cofactor biosynthesis; adenosylcobalamin biosynthesis; adenosylcobalamin from cob(II)yrinate a,c-diamide: step 5/7.</text>
    </comment>
    <comment type="pathway">
        <text evidence="5 12">Cofactor biosynthesis; adenosylcobalamin biosynthesis; adenosylcobalamin from cob(II)yrinate a,c-diamide: step 6/7.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7 12">Belongs to the CobU/CobP family.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.156" evidence="12"/>
    <dbReference type="EC" id="2.7.7.62" evidence="12"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89043.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900110.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1425"/>
    <dbReference type="EnsemblBacteria" id="SHG89043">
        <property type="protein sequence ID" value="SHG89043"/>
        <property type="gene ID" value="SAMN05444003_1425"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00148">
        <property type="reaction ID" value="UER00236"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036429">
        <property type="term" value="F:adenosylcobinamide kinase (ATP-specific) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036428">
        <property type="term" value="F:adenosylcobinamide kinase (GTP-specific) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008820">
        <property type="term" value="F:cobinamide phosphate guanylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00544">
        <property type="entry name" value="CobU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003203">
        <property type="entry name" value="Cobinamide_kinase/P_G-Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34848">
        <property type="entry name" value="PTHR34848"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02283">
        <property type="entry name" value="CobU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006135">
        <property type="entry name" value="CobU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11 12" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="12" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="12 14" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="10 12 15" id="KW-0418">Kinase</keyword>
    <keyword evidence="9 12 14" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="15" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 12 15" id="KW-0808">Transferase</keyword>
    <feature type="active site" description="GMP-histidine intermediate" evidence="13">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <begin position="11"/>
            <end position="18"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <begin position="36"/>
            <end position="38"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="64"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="85"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000312"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00000711"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001522"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00003889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00004692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00005159"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00007490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRNR" id="PIRNR006135"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRSR" id="PIRSR006135-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PIRSR" id="PIRSR006135-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="SHG89043.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="175" mass="18612" checksum="45DA67226BE69E57" modified="2017-03-15" version="1">MALHKLTFVLGGAASGKSALAEQISDATGKPKVYIATAQAFDDEMRQKIAAHQVSRGDSWLTVEEPFDLVGVLERQSAESVVLVDCLTLWLTNILLADHDLDAEFGRLIQALDGRGCELVLVSNEVGQGIVPDNALSRKFLAAQGRLNQKVAASADTVIAVMAGLTIALKGEMPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NMS3</accession>
    <name>A0A1M5NMS3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1501</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90745.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900176.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1501"/>
    <dbReference type="EnsemblBacteria" id="SHG90745">
        <property type="protein sequence ID" value="SHG90745"/>
        <property type="gene ID" value="SAMN05444003_1501"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG90745.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="298" mass="32903" checksum="E5A4C753A2524010" modified="2017-03-15" version="1">MNKLDGLDVFVAVVEAKSFAGAARKLGMPTTTVSAKVSRLEEQLGVSLLRRTTRKQSLTEAGDAYYRSCAPALQTIEQASAALQQNRSEPQGTLRMTAPPDIAQIALAPIIDTYLKRYPDVHVDLRVTNSFVDLVSEQVDLAIRIGELSDASLVIRTFTNGSLSLWAGSAYQAQFTLPTRPEDLERHRLIWLRTRQSKIDLMGPAGETLSLKSSGWLDVDDLQTLKHYVEQGLGIGLLPRFNLPNLQGDPDLIPVLPQYKTAPFRAVFAYTKQNFVPATVRSFIDTAADFARGRTKTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NN89</accession>
    <name>A0A1M5NN89_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 13">Dihydrolipoyl dehydrogenase</fullName>
            <ecNumber evidence="3 13">1.8.1.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">SAMN05444003_1485</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 13">
            <text>(R)-N(6)-dihydrolipoyl-L-lysyl-[protein] + NAD(+) = (R)-N(6)-lipoyl-L-lysyl-[protein] + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:15045"/>
            <dbReference type="Rhea" id="RHEA-COMP:10474"/>
            <dbReference type="Rhea" id="RHEA-COMP:10475"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:83099"/>
            <dbReference type="ChEBI" id="CHEBI:83100"/>
            <dbReference type="EC" id="1.8.1.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11 13">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
        <text evidence="11 13">Binds 1 FAD per subunit.</text>
    </comment>
    <comment type="miscellaneous">
        <text evidence="13">The active site is a redox-active disulfide bond.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 13">Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.</text>
    </comment>
    <dbReference type="EC" id="1.8.1.4" evidence="3 13"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG90403.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900164.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1485"/>
    <dbReference type="EnsemblBacteria" id="SHG90403">
        <property type="protein sequence ID" value="SHG90403"/>
        <property type="gene ID" value="SAMN05444003_1485"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004148">
        <property type="term" value="F:dihydrolipoyl dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045454">
        <property type="term" value="P:cell redox homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016156">
        <property type="entry name" value="FAD/NAD-linked_Rdtase_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006258">
        <property type="entry name" value="Lipoamide_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001100">
        <property type="entry name" value="Pyr_nuc-diS_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004099">
        <property type="entry name" value="Pyr_nucl-diS_OxRdtase_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012999">
        <property type="entry name" value="Pyr_OxRdtase_I_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02852">
        <property type="entry name" value="Pyr_redox_dim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000350">
        <property type="entry name" value="Mercury_reductase_MerA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55424">
        <property type="entry name" value="SSF55424"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01350">
        <property type="entry name" value="lipoamide_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00076">
        <property type="entry name" value="PYRIDINE_REDOX_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5 11 13" id="KW-0274">FAD</keyword>
    <keyword evidence="4 13" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="7 11 13" id="KW-0520">NAD</keyword>
    <keyword evidence="11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 13" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9 13" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="15">
        <location>
            <begin position="4"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="domain" description="Pyr_redox_dim" evidence="14">
        <location>
            <begin position="343"/>
            <end position="452"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="10">
        <location>
            <position position="441"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="51"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="115"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="176"/>
            <end position="183"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="199"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="268"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="309"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="315"/>
            <end position="318"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="disulfide bond" description="Redox-active" evidence="12">
        <location>
            <begin position="42"/>
            <end position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001492"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012608"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR000350-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR000350-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR000350-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU003692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF02852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="SHG90403.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="462" mass="49052" checksum="2AF7B45AA733BC1F" modified="2017-03-15" version="1">MASYDVIVIGSGPGGYVSAIRCAQLGLKTAIVEGRETLGGTCLNVGCIPSKALLHATEMLHEAQANFAKMGLKGKAQTVDWKQMLQYKMDTIGQNTQGVEFLMKKNKIDWLKGWGSIPAVGQVKVGDEVHEAKNIIIASGSTPTDLPGVEVDEKTVVTSTGALELPKVPKTFVVIGGGVIGLELGSVYARLGAEVTVIEFLDQITPGQDKEIAKTFQRTLKKQGMKFVMGAAVQSAKKKGTKAEVTYKLRKDDSEHTITADAVLLATGRRPYTDGLGLAELGVEMTERGQIKTDSHYRTNVTGIYAIGDAIEGPMLAHKAEDEGMACAEGIAGQHPHVNYGVIPGVIYTHPEVSSVGATEEVLKDQGVDYKVGKFSFMGNGRAKANFAGDGFVKILADKATDRILGAHIIGPMAGDLIHEICVAMEFGATAEDLARTCHAHPTYSEAVREAALACGDGAIHM</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NR47</accession>
    <name>A0A1M5NR47_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Formyl-CoA transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1552</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91947.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900221.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1552"/>
    <dbReference type="EnsemblBacteria" id="SHG91947">
        <property type="protein sequence ID" value="SHG91947"/>
        <property type="gene ID" value="SAMN05444003_1552"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003673">
        <property type="entry name" value="CoA-Trfase_fam_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044855">
        <property type="entry name" value="CoA-Trfase_III_dom3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023606">
        <property type="entry name" value="CoA-Trfase_III_dom_1_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02515">
        <property type="entry name" value="CoA_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89796">
        <property type="entry name" value="SSF89796"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG91947.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="394" mass="42111" checksum="D7CA20C482D2FB85" modified="2017-03-15" version="1">MTSPLKGVRVLDLTNVLAGPFCCYQLGLLGAEVIKVERPGTGDLARELGADPERNAAGMGVSFLAQNAGKKSVTLDLKSDTGKDLLKRLLETADVLVENFRPGVMDRLGLGYEVLKEVKPSLIYCAISGFGQTGPRKDDPAYDQIVQGISGVMSITGTKDTAPTRVGYPLADTTGGLTAAFAISAALNQTPRGAFLDIAMSEAVMSTMGWVVSNHLIGGVDPAADGNENPTSAPSGTFETADHPINIAANRDSQWAALAKHLNREDLLTHPDYATREDRKRNRHKLRTVLEETLRTSPADKWVAELNALGVPSGPVLTVQDALKDPQATGRNLTAAFPNGSEMLELLGSPILFGDQRPHPTTPPPDLGADNNDVWGMLGLSEEDLDELRKRKVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NRQ3</accession>
    <name>A0A1M5NRQ3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acetyl-CoA synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1565</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG92284.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900234.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1565"/>
    <dbReference type="EnsemblBacteria" id="SHG92284">
        <property type="protein sequence ID" value="SHG92284"/>
        <property type="gene ID" value="SAMN05444003_1565"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="31"/>
            <end position="440"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="449"/>
            <end position="527"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG92284.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="539" mass="58419" checksum="BAC7F92460058494" modified="2017-03-15" version="1">MLRRSDSYTSLRADFSWDIPEFYNVGVDACDKWAEQTPDASAIVDVKSHGVETYSFSALKALSNQYANVISTHASTGDRIAVLLPQQVETAAAHIAITKMGCVALPLTTLFGPDALQHRLGDSGATALITNCETASKLTEHADALPNLKAIFTVDGATKGTLDLTELAKSQSDRFTPAKTKSDDPAFLIYTSGTTGNPKGALHAHRVLLGHLPGVEMSHDFLPQKDDKFWTPADWAWIGGLLDVLFPALHHGLPVVAHRFQKFTGDAAFDFIETHGIRNAFIPPTALKMMRQAAKQRPLNMRSVGSGGETLGKELIEWGERMLGTTINEFYGQTECNMIVSSCSAIAPAEPGVMGFAVPGHEVEVLSGDNTPCPIGTIGAIAVKTPDPVMFLGYWNNPTAADQKFVTNTHGKWLLTGDTGLKTESGRIQFVGRDDDVINSAGYRIGPGEIEDCLLTHPAVQLAGVVGAPDDMRGERVTAFVTLADGQTETEALAFDIQTHVKSRLAAYEYPREIHFTDDMPMTTTGKIIRAELRKRVRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NSQ2</accession>
    <name>A0A1M5NSQ2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Molecular chaperone IbpA, HSP20 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1554</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2 3">Belongs to the small heat shock protein (HSP20) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91993.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900223.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1554"/>
    <dbReference type="EnsemblBacteria" id="SHG91993">
        <property type="protein sequence ID" value="SHG91993"/>
        <property type="gene ID" value="SAMN05444003_1554"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd06470">
        <property type="entry name" value="ACD_IbpA-B_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.790">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002068">
        <property type="entry name" value="A-crystallin/Hsp20_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037913">
        <property type="entry name" value="ACD_IbpA/B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008978">
        <property type="entry name" value="HSP20-like_chaperone"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00011">
        <property type="entry name" value="HSP20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49764">
        <property type="entry name" value="SSF49764"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01031">
        <property type="entry name" value="SHSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0346">Stress response</keyword>
    <feature type="domain" description="SHSP" evidence="4">
        <location>
            <begin position="27"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003616"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS01031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG91993.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="137" mass="15348" checksum="398BECA4C69AA539" modified="2017-03-15" version="1">MTKLALGTHPYLLGFEQLERLVERTAKTGNEGYPPYNIEQTSEHSYRITLAVAGFTSSDLSITVEDNTLMIRGRQVDDSEGRMFLHRGIAARQFQRSFVLADGVDVGEAIMENGLLHVDLTRQVPEKVIQTIEIKKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NU46</accession>
    <name>A0A1M5NU46_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1596</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1596"/>
    <dbReference type="EnsemblBacteria" id="SHG93081">
        <property type="protein sequence ID" value="SHG93081"/>
        <property type="gene ID" value="SAMN05444003_1596"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007413">
        <property type="entry name" value="DUF463_YcjX"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38605">
        <property type="entry name" value="PTHR38605"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04317">
        <property type="entry name" value="DUF463"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF019381">
        <property type="entry name" value="YcjX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG93081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="463" mass="50865" checksum="C2605B66F5259EE4" modified="2017-03-15" version="1">MADGVMRGVESVTDTLTAPLSDPVIRLGVTGLSRAGKTVFITSLIANLMNRGRMPQLRNVANIQTAYLQPQPDDTIPRFDYEAHLSKLTSKTPSWPDGTRHISELRLSLKVQPTGLLSSLSGPRTIHLDIVDYPGEWLLDLGLLDQSFAEWSKTALTRAKDRPEGEAYLTALADIEPNEKLDEATAKALSDLFASHLHAARAAGYSDCSPGRFLLPGDLAGSPVLTFAPLPDVKYGRGSLGREFKRRFESYKRNVVKPFFRDHFSKIDRQIVLVDVLGAIHAGPKAVEDLRSAMADILGAFRPGRNAFLTRLFQGRRVEKILFAATKADHLHHVQHPQLTAITEALLRDAKDRADFAGAQTAAMSIASLRTTVEETVDHRDGPLDVVRGQLLENGKQAAFYPGALPTDPQHLLGPAREGQEAWLDADYQVMRFAPASLTLRPSDGPPHIRLDKAAEFLIGDRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NY15</accession>
    <name>A0A1M5NY15_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6">Glutamine-dependent NAD(+) synthetase</fullName>
            <ecNumber evidence="5 6">6.3.5.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5 6">NAD(+) synthase [glutamine-hydrolyzing]</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">nadE</name>
        <name evidence="9" type="ORF">SAMN05444003_1629</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5 6">
            <text>ATP + deamido-NAD(+) + H2O + L-glutamine = AMP + diphosphate + H(+) + L-glutamate + NAD(+)</text>
            <dbReference type="Rhea" id="RHEA:24384"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.3.5.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 5 6">Cofactor biosynthesis; NAD(+) biosynthesis; NAD(+) from deamido-NAD(+) (L-Gln route): step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the NAD synthetase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 5 6">In the C-terminal section; belongs to the NAD synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.1" evidence="5 6"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG93863.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900291.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1629"/>
    <dbReference type="EnsemblBacteria" id="SHG93863">
        <property type="protein sequence ID" value="SHG93863"/>
        <property type="gene ID" value="SAMN05444003_1629"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00253">
        <property type="reaction ID" value="UER00334"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004359">
        <property type="term" value="F:glutaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003952">
        <property type="term" value="F:NAD+ synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008795">
        <property type="term" value="F:NAD+ synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009435">
        <property type="term" value="P:NAD biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00553">
        <property type="entry name" value="NAD_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02090">
        <property type="entry name" value="NadE_glutamine_dep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003010">
        <property type="entry name" value="C-N_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036526">
        <property type="entry name" value="C-N_Hydrolase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014445">
        <property type="entry name" value="Gln-dep_NAD_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022310">
        <property type="entry name" value="NAD/GMP_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003694">
        <property type="entry name" value="NAD_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23090">
        <property type="entry name" value="PTHR23090"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00795">
        <property type="entry name" value="CN_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02540">
        <property type="entry name" value="NAD_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006630">
        <property type="entry name" value="NADS_GAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56317">
        <property type="entry name" value="SSF56317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00552">
        <property type="entry name" value="nadE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50263">
        <property type="entry name" value="CN_HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 6 7" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 6 7" id="KW-0520">NAD</keyword>
    <keyword evidence="3 5 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CN hydrolase" evidence="8">
        <location>
            <begin position="4"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor; for glutaminase activity" evidence="5">
        <location>
            <position position="44"/>
        </location>
    </feature>
    <feature type="active site" description="For glutaminase activity" evidence="5">
        <location>
            <position position="112"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile; for glutaminase activity" evidence="5">
        <location>
            <position position="150"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="176"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="182"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="291"/>
            <end position="298"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="374"/>
        </location>
        <ligand>
            <name>deamido-NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="398"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="403"/>
        </location>
        <ligand>
            <name>deamido-NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="522"/>
        </location>
        <ligand>
            <name>deamido-NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005188"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR006630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003811"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG93863.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="553" mass="61032" checksum="6CC0A403598805DA" modified="2017-03-15" version="1">MDNFRLTMAQLNPTVGDLAGNCAKAKAAWDEGKAAGADLVALPEMFVTGYQTQDLVRKPAFVAGALAHVEQLAKDCADGPILTIGAPFLNGERLHNSYFVLKGGEIASRMDKHFLPNFNVFDEVRLFNRGEISGPFAVGNDGPRLGSPICEDAWYPDVCEAMVEAGAEVLLVPNGSPYFRDKFPIRLMNMVSRVVENDVPLVYLNMVGGQDDQMFDGGSFVLNRSGKLAVQLPVFDEVIVQVDFVRGEEGWEAQEGQREVFPDSLEQDYRAMVESLRDYMGKTGFQKVLLGLSGGIDSAIVATIAADALGPENVRCVMLPSEYTSQGSLDDAQGVVDALGCKFDMVSIAGPRAAVTEALAPLFEGLEEGLTEENIQSRLRGLLLMAQSNKFGEMLLTTGNKSEVAVGYATIYGDMSGGYNPIKDVYKTRVFETCRWRNANHRPWMKAPEGEMIPVSIIDKPPSAELRPDQKDEDSLPPYDVLDGILEMLVDREMSVADCVEAGYDRETVKRVEHLLYISEYKRFQSAPGTRLSDRAFWLDRRYPIVNRWRDSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PMD6</accession>
    <name>A0A1M5PMD6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Aminopeptidase T. Metallo peptidase. MEROPS family M29</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_1729</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Co(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:48828"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the peptidase M29 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02900.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900867.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1729"/>
    <dbReference type="EnsemblBacteria" id="SHH02900">
        <property type="protein sequence ID" value="SHH02900"/>
        <property type="gene ID" value="SAMN05444003_1729"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004177">
        <property type="term" value="F:aminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1830.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035097">
        <property type="entry name" value="M29_N-terminal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000787">
        <property type="entry name" value="Peptidase_M29"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02073">
        <property type="entry name" value="Peptidase_M29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00919">
        <property type="entry name" value="THERMOPTASE"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 10" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="6" id="KW-0645">Protease</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00008236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH02900.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="409" mass="43894" checksum="2075A46C8DAE0D70" modified="2017-03-15" version="1">MTIDPQKLDRLAEVAVRTGVNLQPGQDLVITAPMAALELVQRIAVHAYKAGAGIVTPFFNDDAITLARYENASDESFDKAPAWLFEGMAQAYKNGAARMAITGDDPMLLADQDPEKVARLSKATSIAAKPAMEPIVGFEVNWNIVAYPGAAWASRVFPELPVEEAQGKLMDAIYDASRLDGDDPVANWADHTANLKKRVDWLNEMNFAALHYTGPGTDLNLGLAEGHIWKGGASPALNGVTCQPNIPTEEVFTCPHAYKVEGTVSATKPLAHQGSLIENIKVRFEAGKIVEASATKGEDVLQALLKTDDGASRIGEVALVPHSSPISQSGTLFYNTLFDENASCHIALGQCYADTIKGGSELKPEELQQLGGNQSLIHVDWMMGSDAVDIDGIKKDGTIVPVMRAGEWA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PNM1</accession>
    <name>A0A1M5PNM1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphatidate cytidylyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1724</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02823.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900537.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1724"/>
    <dbReference type="EnsemblBacteria" id="SHH02823">
        <property type="protein sequence ID" value="SHH02823"/>
        <property type="gene ID" value="SAMN05444003_1724"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="51"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="93"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="119"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="146"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="183"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="224"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="247"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH02823.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="313" mass="34165" checksum="2D2E87AD4ACB38B9" modified="2017-03-15" version="1">MSPTTTDIILLTLASGGILLALTIIGEILHARRGDEDSPVLETYMTRVQSWWGIIIIVGLALLSGKVGVMIVCAFASFAALREFLTLTNKARADHISLALAFFVILPLQYVFIGLEWEAIYTIFIPVYAFLLLPIVSAIRGNSDRFLIRVAETQWGLMIAVFCVSHVAALVTIDFPNYGDRSLLLIAFLVIVVQLGDLLDFFFGRRIGRTKIAPTLSPKTVEGLICGVGSAIIIGGLLHWITPFGVYGAMVMAGVSSLVGMGGNLVFAAIKRDRGVKDWSHLIPGQGGFVEQLDSVIFAAPIFYHLTMFFWVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PU24</accession>
    <name>A0A1M5PU24_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Putative_PNPOx domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1848</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05298.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900642.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1848"/>
    <dbReference type="EnsemblBacteria" id="SHH05298">
        <property type="protein sequence ID" value="SHH05298"/>
        <property type="gene ID" value="SAMN05444003_1848"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024029">
        <property type="entry name" value="Pyridox_Oxase_FMN-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011576">
        <property type="entry name" value="Pyridox_Oxase_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01243">
        <property type="entry name" value="Putative_PNPOx"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04025">
        <property type="entry name" value="PPOX_FMN_DR2398"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Putative_PNPOx" evidence="1">
        <location>
            <begin position="35"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01243"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH05298.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="205" mass="22385" checksum="C902486B5616CA46" modified="2017-03-15" version="1">MSDGVIRDVAELEAIYGTASEASLIKVADRVIPVYADWIRRSQLCILTTVGPEGTDGSPRGDDGPVVQIADEKTLLMPDWRGNNRMDSLRNIVRDGRVSLMFMVPGSNNVIRVNGTGVVSVAEDMVARFNDKGRWPRSVIVITVGEVYSQCARALIRSGTWTASDQSEGLPSVGDMLAAMKADFDGKSYDIEWDARAAKTMWNAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PWD5</accession>
    <name>A0A1M5PWD5_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Sulfur carrier protein FdhD</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">fdhD</name>
        <name evidence="4" type="ORF">SAMN05444003_1890</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the FdhD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06138.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1890"/>
    <dbReference type="EnsemblBacteria" id="SHH06138">
        <property type="protein sequence ID" value="SHH06138"/>
        <property type="gene ID" value="SAMN05444003_1890"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097163">
        <property type="term" value="F:sulfur carrier activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016783">
        <property type="term" value="F:sulfurtransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00187">
        <property type="entry name" value="FdhD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016193">
        <property type="entry name" value="Cytidine_deaminase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003786">
        <property type="entry name" value="FdhD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30592">
        <property type="entry name" value="PTHR30592"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02634">
        <property type="entry name" value="FdhD-NarQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015626">
        <property type="entry name" value="FdhD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53927">
        <property type="entry name" value="SSF53927"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 3" id="KW-0501">Molybdenum cofactor biosynthesis</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Cysteine persulfide intermediate" evidence="3">
        <location>
            <position position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH06138.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="293" mass="31753" checksum="EC251179C0B41757" modified="2017-03-15" version="1">MAQLPDISEYIIAPDIERAGLTRDVVGMDETGAAVSTPVIEERPLTIFLNSQEIVTAMTIGDYPEYLALGFLRNQRMLADGEEITGVEFDEELETVVVRTASQTTYEEKLRKKTRTSGCAVGTVFGDMMEGLEGVTLPQAVVKTSDLYALSSKINRTPSLYLNSGAIHGTVLCQGDRPLVYMEDVGRHNAVDKVAGWMLSDCVSGADKTLYTTGRLTSEMVIKTAMMGIPVLVSRSGFTAWGVEIAQQVGMTLIGRMKGKRMTCLSGDERLLRDADLSKVVEEPKGAGRKAAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q017</accession>
    <name>A0A1M5Q017_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 9">4-diphosphocytidyl-2-C-methyl-D-erythritol kinase</fullName>
            <shortName evidence="9">CMK</shortName>
            <ecNumber evidence="2 9">2.7.1.148</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8 9">4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">ispE</name>
        <name evidence="12" type="ORF">SAMN05444003_1952</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>4-CDP-2-C-methyl-D-erythritol + ATP = 4-CDP-2-C-methyl-D-erythritol 2-phosphate + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:18437"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57823"/>
            <dbReference type="ChEBI" id="CHEBI:57919"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.148"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="9">Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-phosphate: step 3/6.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 9">Belongs to the GHMP kinase family. IspE subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.148" evidence="2 9"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07270.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900728.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1952"/>
    <dbReference type="EnsemblBacteria" id="SHH07270">
        <property type="protein sequence ID" value="SHH07270"/>
        <property type="gene ID" value="SAMN05444003_1952"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00056">
        <property type="reaction ID" value="UER00094"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050515">
        <property type="term" value="F:4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019288">
        <property type="term" value="P:isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016114">
        <property type="term" value="P:terpenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.890">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00061">
        <property type="entry name" value="IspE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013750">
        <property type="entry name" value="GHMP_kinase_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036554">
        <property type="entry name" value="GHMP_kinase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006204">
        <property type="entry name" value="GHMP_kinase_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004424">
        <property type="entry name" value="IspE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43527:SF2">
        <property type="entry name" value="PTHR43527:SF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08544">
        <property type="entry name" value="GHMP_kinases_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00288">
        <property type="entry name" value="GHMP_kinases_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF010376">
        <property type="entry name" value="IspE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55060">
        <property type="entry name" value="SSF55060"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00154">
        <property type="entry name" value="ispE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7 9" id="KW-0414">Isoprene biosynthesis</keyword>
    <keyword evidence="5 9 12" id="KW-0418">Kinase</keyword>
    <keyword evidence="4 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GHMP_kinases_N" evidence="10">
        <location>
            <begin position="89"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="domain" description="GHMP_kinases_C" evidence="11">
        <location>
            <begin position="213"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="11"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="137"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="96"/>
            <end position="106"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009684"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00017473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00032554"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF08544"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHH07270.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="286" mass="29832" checksum="928DB6B80712F51B" modified="2017-03-15" version="1">MTILKGLAPAKINLTLHVTGQREDGYHLLDSLVVFADVGDEIEVASAPNLDLTISGPFTEGVPTDSSNIVLKAANALRYAHGVEDGAIIRLTKNLPNGAGIGGGSSDAATVLSMLAQLWDVPELAPTSPAAVALGADVPVCMHAPTPVRMSGIGEFISAFPPLPECALVLVNPMVLVPTGGIFDALSSKDNEPMSSVPDGTNVDELASWLKHQRNDLLPPARQMAPEIDAALNALENNPLVLTAGMSGSGATCFGLVRDIGAARQVARAIQVSHMSWWVVPTQILK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q1Q6</accession>
    <name>A0A1M5Q1Q6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Flavocytochrome MsrQ</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">msrQ</name>
        <name evidence="9" type="ORF">SAMN05444003_1991</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
        <text evidence="7">Binds 1 FMN per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>heme b</name>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
        </cofactor>
        <text evidence="7">Binds 1 heme b (iron(II)-protoporphyrin IX) group per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Heterodimer of a catalytic subunit (MsrP) and a heme-binding subunit (MsrQ).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the MsrQ family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07988.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900755.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH07988">
        <property type="protein sequence ID" value="SHH07988"/>
        <property type="gene ID" value="SAMN05444003_1991"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030091">
        <property type="term" value="P:protein repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01207">
        <property type="entry name" value="MsrQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013130">
        <property type="entry name" value="Fe3_Rdtase_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022837">
        <property type="entry name" value="MsrQ-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36964">
        <property type="entry name" value="PTHR36964"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01794">
        <property type="entry name" value="Ferric_reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0249">Electron transport</keyword>
    <keyword evidence="7" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="7" id="KW-0288">FMN</keyword>
    <keyword evidence="7" id="KW-0349">Heme</keyword>
    <keyword evidence="5 7" id="KW-0408">Iron</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="17"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="55"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="83"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="122"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="153"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="177"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="domain" description="Ferric oxidoreductase" evidence="8">
        <location>
            <begin position="55"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01207"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01794"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH07988.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="208" mass="23640" checksum="183C5ED2C3622029" modified="2017-03-15" version="1">MDIVGTINTAARKVPTWTIYIVGAGWLVYLFYLAAFTRAFGPEPINALEREYGEIGLQLLVVGLLITPLRETFGISLIKFRRAIGVMTFFFILAHFLVFAILDVQSLERVWTEVVKRPYLTVGMISFVALIPLAITSNNYSVRKMGAIAWRRLHWLTYPAAILGALHYVWLAKGFQIEPLVYLAVLIGLVAYRYRPKNRSKNRAMSRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q3S9</accession>
    <name>A0A1M5Q3S9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">MFS transporter, UMF1 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2015</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH08471.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900775.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2015"/>
    <dbReference type="EnsemblBacteria" id="SHH08471">
        <property type="protein sequence ID" value="SHH08471"/>
        <property type="gene ID" value="SAMN05444003_2015"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024671">
        <property type="entry name" value="Atg22-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11700">
        <property type="entry name" value="ATG22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="21"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="60"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="92"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="116"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="159"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="206"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="272"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="298"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="325"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="362"/>
            <end position="381"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="401"/>
            <end position="423"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="429"/>
            <end position="448"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH08471.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="462" mass="49910" checksum="6023EFBD051A9845" modified="2017-03-15" version="1">MAAVSKKRIWGWMTFDWATQPYYTLGLTFIFGPYFAVVATDYYLSQGLADAEARAQAQSIWAGGQTVAGLVIAFTAPFLGAFADNTGRKRPWIALFSVIYVIGAAALWYMKPDTSSLFLFLFIFYIGFIAAESALNFVNAYLPSMGDDDEVGKVSGSGAAFGYWGGLVSVIIMLAFFAESGDTGKTIAGLSPVFGLDPDQREGTRAVGPFIAIWYVLFIIPFFMWVKDDPEDAGEVPKMSKVISDLVTTLKRVGQHKSTASFLIGGMFYRDALNALYAFGGVYATLVLGWTVAELGPFAIASIIAAAVFTFVGGRFDARVGPKPVIKVCIYFLIFVCVVTVSLSRESLFGIPLPEGSNIPDIIFFIIGCMIGGAGGALYAASRSLMVRHGHPDRPTETFGLFALSGKATAFLAPLLISVFTAATGNVQLGYLPLIFLFLLGLILLRWVNKDGDRAEWAASQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q6K1</accession>
    <name>A0A1M5Q6K1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="17">Antenna pigment protein alpha chain</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="20" type="ORF">SAMN05444003_2063</name>
    </gene>
    <organism evidence="20 21">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="20 21" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20 21">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">The core complex is formed by different alpha and beta chains, binding bacteriochlorophyll molecules, and arranged most probably in tetrameric structures disposed around the reaction center. The non-pigmented gamma chains may constitute additional components.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Single-pass type II membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Membrane</location>
            <topology evidence="3">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the antenna complex alpha subunit family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09401.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900819.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2063"/>
    <dbReference type="EnsemblBacteria" id="SHH09401">
        <property type="protein sequence ID" value="SHH09401"/>
        <property type="gene ID" value="SAMN05444003_2063"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019866">
        <property type="term" value="C:organelle inner membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030077">
        <property type="term" value="C:plasma membrane light-harvesting complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042314">
        <property type="term" value="F:bacteriochlorophyll binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045156">
        <property type="term" value="F:electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019684">
        <property type="term" value="P:photosynthesis, light reaction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.220.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000066">
        <property type="entry name" value="Antenna_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018332">
        <property type="entry name" value="Antenna_alpha"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002361">
        <property type="entry name" value="Antenna_alpha_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035889">
        <property type="entry name" value="Light-harvesting_complex"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00556">
        <property type="entry name" value="LHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00673">
        <property type="entry name" value="LIGHTHARVSTA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56918">
        <property type="entry name" value="SSF56918"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00968">
        <property type="entry name" value="ANTENNA_COMP_ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0042">Antenna complex</keyword>
    <keyword evidence="12" id="KW-0076">Bacteriochlorophyll</keyword>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0148">Chlorophyll</keyword>
    <keyword evidence="14" id="KW-0157">Chromophore</keyword>
    <keyword evidence="16" id="KW-0437">Light-harvesting polypeptide</keyword>
    <keyword evidence="11" id="KW-0460">Magnesium</keyword>
    <keyword evidence="15 18" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="21" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 18" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="13 18" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="18">
        <location>
            <begin position="16"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="domain" description="LHC" evidence="19">
        <location>
            <begin position="5"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002455"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004249"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005629"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011367"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022549"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00022991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00023243"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00029710"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="19">
        <source>
            <dbReference type="Pfam" id="PF00556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="EMBL" id="SHH09401.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="51" mass="5897" checksum="9DBF1E6F789A75A5" modified="2017-03-15" version="1">MAQFYKIWLVFDPRRVFVAQGVFLFLLAAMIHLVLLSNDSTNWFTLAFSAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q7C9</accession>
    <name>A0A1M5Q7C9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Phosphatidylglycerophosphate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2077</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CDP-alcohol phosphatidyltransferase class-I family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09681.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900832.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2077"/>
    <dbReference type="EnsemblBacteria" id="SHH09681">
        <property type="protein sequence ID" value="SHH09681"/>
        <property type="gene ID" value="SAMN05444003_2077"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016780">
        <property type="term" value="F:phosphotransferase activity, for other substituted phosphate groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008654">
        <property type="term" value="P:phospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1760">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000462">
        <property type="entry name" value="CDP-OH_P_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043130">
        <property type="entry name" value="CDP-OH_PTrfase_TM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01066">
        <property type="entry name" value="CDP-OH_P_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00379">
        <property type="entry name" value="CDP_ALCOHOL_P_TRANSF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="33"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="80"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="109"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="153"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU003750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH09681.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="202" mass="21505" checksum="09680AC9E2935A55" modified="2017-03-15" version="1">MLDRYARQLIDTPLNAIGRQIASMGGTANGVTLAGLALGLVAAALIAFGATGWGLVFLLLSRIADGLDGAVARATEKTDFGGYLDIACDFLFYGAIPFAFVVMDPSANAIAGAFLLLSFYFNGSSFLGFAILAEKHDIETTAQGQKSLYYSNGLLEGTETIGFFVLLCLFPLYFAPLAWIFGTLCFATAILRIYGAQKTFTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QIL2</accession>
    <name>A0A1M5QIL2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2132</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH13716.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH13716">
        <property type="protein sequence ID" value="SHH13716"/>
        <property type="gene ID" value="SAMN05444003_2132"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH13716.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="292" mass="33614" checksum="31F34EFDBB97DA40" modified="2017-03-15" version="1">MDHEDVVSLTGLNTICRYQELTKIADKSLQNYAARTRELFGPVAKSFDDDKNAEWLIRSYLALKFVLASTVLGTSANHADNENLKITLPYLNYYTMLNCTRAFIFTLPCVEWKDEKSIEMTHQNIINTAGDKLRRVDGSIALAIKSRLLIGQKQRELFSYRFPATGLSVFKDDLIKVEEAIETARFLAELAQFNLSCLEAAVRKHTELSFKVGGQDNLWDLMRYNTKTQELIDDDDYHRVGYFVRKYRYPSELVSLGTHGLLEDFFGAWVSEDENSQGYNPDEDWNLLLDFQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QIM4</accession>
    <name>A0A1M5QIM4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Taurine transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2146</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH13977.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2146"/>
    <dbReference type="EnsemblBacteria" id="SHH13977">
        <property type="protein sequence ID" value="SHH13977"/>
        <property type="gene ID" value="SAMN05444003_2146"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="70"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="253"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="293"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="316"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="368"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="410"/>
            <end position="429"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="249"/>
            <end position="429"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH13977.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="443" mass="48080" checksum="7B282BCF86A73345" modified="2017-03-15" version="1">MSIFSELFNELLAVLSTLVAAIPYIAGYILLILLFLFIWNLVKRVLTPKSDFGSLKTVTFGDESAVTSNTVASVVSILLIFVLWGAFTGSKLLPGFMHMPGAFTGEGTFVYTATAGDQSDDAEVTFLVFQTGEDVEAPEVELGDGFAKNDSIAIAAYRSELLRVDLNDELGRDEGAVVSHVNGTPIEPGGSVSTEFGQVNMSQKGTLNIVPSTGWQMEPIWLPSPERVWERMGEITTDGFRNFTLAQHLGYSLFRVIVGFLLGALVGIPLGYAMGLSDWFRGWFDPIVEFMRPVPPLALIPLVIIWAGIGEEGKIILLFLAALWIMAIGARAGVSGVRISKVHAAYSLGASKWQIMRYVIIPNSLPEIFTAARVAMGVCWGTVVAAELVAAQKGAGMMIMTASKFQNTDIVIMGIILIGIIGFSIDMLMRQLEKWLVPWKGKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QJA3</accession>
    <name>A0A1M5QJA3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Zinc/manganese transport system substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2145</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the bacterial solute-binding protein 9 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH13956.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900955.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2145"/>
    <dbReference type="EnsemblBacteria" id="SHH13956">
        <property type="protein sequence ID" value="SHH13956"/>
        <property type="gene ID" value="SAMN05444003_2145"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007155">
        <property type="term" value="P:cell adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030001">
        <property type="term" value="P:metal ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006129">
        <property type="entry name" value="AdhesinB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006128">
        <property type="entry name" value="Lipoprotein_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006127">
        <property type="entry name" value="ZnuA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01297">
        <property type="entry name" value="ZnuA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00691">
        <property type="entry name" value="ADHESINB"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00690">
        <property type="entry name" value="ADHESNFAMILY"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0732">Signal</keyword>
    <keyword evidence="1 3" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009913207" evidence="5">
        <location>
            <begin position="28"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="118"/>
            <end position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH13956.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="366" mass="39547" checksum="0C2B4617B240E0C1" modified="2017-03-15" version="1">MPSRRSILISATAISALTVAAPTSVWADEPLPVVATFSILGDMVAEIGGEHIALTTLVGPDGDAHVYQPTPQDARAVADAELLFMNGLEFEGWLERLAEAASFDGELVVATTGIEPIEFDGHEGHDDHDDHDDEHADHDKHDDDEDHEHDEDEHDDHDHDGHDDHGDDKDHDDHDHDKEDDHAGHEGHDHGEFDPHAWQSLDAAIIYADNIAAGLARIDPDNAGDYYANRASFVAQIEALEEEIHALMDAIPADKRTVVTSHDAFGYFGRDHNLEFLAPQGLSTNSEASAADVAALIEQIKEDGIAAVFVESLTDSRLIEQIANETGATIGGTLYPGALSGPEGPAPTYLDMMRHNATTLSQALSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QKL8</accession>
    <name>A0A1M5QKL8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Phosphate ABC transporter substrate-binding protein, PhoT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2172</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14528.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900992.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2172"/>
    <dbReference type="EnsemblBacteria" id="SHH14528">
        <property type="protein sequence ID" value="SHH14528"/>
        <property type="gene ID" value="SAMN05444003_2172"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07185">
        <property type="entry name" value="OmpA_C-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006665">
        <property type="entry name" value="OmpA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036737">
        <property type="entry name" value="OmpA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00691">
        <property type="entry name" value="OmpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103088">
        <property type="entry name" value="SSF103088"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51123">
        <property type="entry name" value="OMPA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012770647" evidence="2">
        <location>
            <begin position="32"/>
            <end position="523"/>
        </location>
    </feature>
    <feature type="domain" description="OmpA-like" evidence="3">
        <location>
            <begin position="403"/>
            <end position="523"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH14528.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="523" mass="56164" checksum="D6D848D8DF502263" modified="2017-03-15" version="1">MIWRNADPLRNYGKRAVLGAALFLCATASFANEPITLTSKSGALELTGELLGFDGEYIQIATEYGPVSLSFARVDCAGAECPDPDNFVARLKFAGEAAIADVLLPALWDGFARTQGWSTQFDELDGGSIGVATNSAGTVEAVLEISSSSTDQGFADLFDHKANAVVATREITDEELSTARTQRLDDLESSTRSRILGLDAMTPIVSPLRKTRSLSLVQLQRALKGEVTGWEAFGESAAPLQVHLGPEGSGSTQTALRYLIGGAEPVGVTYHETQADMANAVVSDRNAIGLSSVLRTGGARPVALLDDCGFLSAPSPIGIKTEDYPLTAPIFLYLPPRIMPQVFKDFVEWTRSPAAQLIVRRTGYVDQTVVPIPLDAQGQRFANAIERVGTEVPFDELQRFVRLISDQTRLSLSFRFEAGSAELDAQSRSNLMDLAAAIRNGEYDGQELKLIGFSDGIGDASANRELSGARAEAVRRALLSRLGDAAENVALDIAAFGEALPMACDDTELGQRTNRRVELWVKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QNS9</accession>
    <name>A0A1M5QNS9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">UPF0716 protein FxsA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2232</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15752.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901096.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2232"/>
    <dbReference type="EnsemblBacteria" id="SHH15752">
        <property type="protein sequence ID" value="SHH15752"/>
        <property type="gene ID" value="SAMN05444003_2232"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007313">
        <property type="entry name" value="FxsA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35335">
        <property type="entry name" value="PTHR35335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04186">
        <property type="entry name" value="FxsA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="28"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="120"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="120"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="143"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH15752.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="162" mass="17956" checksum="F282416B4F80C4C5" modified="2017-03-15" version="1">MWFFALFLIIPLIEIALFIQVGGLIGLFPTLAFVVLTAITGSMLIRRQGAREMANLRSSFENLNDPTEPLAHGAMILFSGALLITPGFFTDAVGFALLVPPVRNAVFKWTKSRAHVTHFQMGSAQSTEPQRQYPNDTVIDGEFENLGDTKKPTHEPSGWTRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QPR7</accession>
    <name>A0A1M5QPR7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Ribosomal RNA small subunit methyltransferase G</fullName>
            <ecNumber evidence="2">2.1.1.170</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">16S rRNA 7-methylguanosine methyltransferase</fullName>
            <shortName evidence="2">16S rRNA m7G methyltransferase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">rsmG</name>
        <name evidence="3" type="ORF">SAMN05444003_2222</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>guanosine(527) in 16S rRNA + S-adenosyl-L-methionine = N(7)-methylguanosine(527) in 16S rRNA + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42732"/>
            <dbReference type="Rhea" id="RHEA-COMP:10209"/>
            <dbReference type="Rhea" id="RHEA-COMP:10210"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74269"/>
            <dbReference type="ChEBI" id="CHEBI:74480"/>
            <dbReference type="EC" id="2.1.1.170"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.170" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15563.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901079.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2222"/>
    <dbReference type="EnsemblBacteria" id="SHH15563">
        <property type="protein sequence ID" value="SHH15563"/>
        <property type="gene ID" value="SAMN05444003_2222"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070043">
        <property type="term" value="F:rRNA (guanine-N7-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00074">
        <property type="entry name" value="16SrRNA_methyltr_G"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003682">
        <property type="entry name" value="rRNA_ssu_MeTfrase_G"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31760">
        <property type="entry name" value="PTHR31760"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02527">
        <property type="entry name" value="GidB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003078">
        <property type="entry name" value="GidB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00138">
        <property type="entry name" value="rsmG_gidB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 3" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="2" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 3" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="2">
        <location>
            <begin position="123"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="69"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="74"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="137"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00074"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH15563.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="205" mass="23094" checksum="9735299281D7C412" modified="2017-03-15" version="1">MSVEIAGIDVSRETFDRLKGYESLVKKWNPKINLVAKSTLDYVWDRHIIDSAQVFGVLHEIPENWVDIGSGGGFPGLVVATLAKEHYPNAKFTLIESDARKSTFLRTVSRELELNCVVIAKRIEAAPSQDADVISARALAPLDDLFHHAIQHLKPNGRAVFQKGQSFRDEIEQARKNWKFDVVAHPSLTDKRAKIIEAWNIEPIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QTR3</accession>
    <name>A0A1M5QTR3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic</fullName>
            <ecNumber evidence="4">1.3.1.75</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_2310</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>NADP(+) + protochlorophyllide a = 3,8-divinyl protochlorophyllide a + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:48884"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:58632"/>
            <dbReference type="ChEBI" id="CHEBI:83350"/>
            <dbReference type="EC" id="1.3.1.75"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Porphyrin-containing compound metabolism; chlorophyll biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Plastid</location>
            <location evidence="1">Chloroplast</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EC" id="1.3.1.75" evidence="4"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17348.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2310"/>
    <dbReference type="EnsemblBacteria" id="SHH17348">
        <property type="protein sequence ID" value="SHH17348"/>
        <property type="gene ID" value="SAMN05444003_2310"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00668"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033728">
        <property type="term" value="F:divinyl chlorophyllide a 8-vinyl-reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015995">
        <property type="term" value="P:chlorophyll biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044201">
        <property type="entry name" value="DVR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016040">
        <property type="entry name" value="NAD(P)-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47378">
        <property type="entry name" value="PTHR47378"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13460">
        <property type="entry name" value="NAD_binding_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="241"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="domain" description="NAD(P)-bd_dom" evidence="7">
        <location>
            <begin position="22"/>
            <end position="202"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023990"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00024059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00024089"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF13460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH17348.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="326" mass="34752" checksum="E9FB7AE73DCC5819" modified="2017-03-15" version="1">MLCLIRHLLGPMTTGHDILLFGATGSIGCAVLVALKSSGYRVTVVGRTEVDADEFVAADVTSFESLAAAVPERPFAAVISCLASRTGSPADAWAIDHAAHLNILELAKARGIGQFNLLSAICVQRPMLAFQEAKLAFEAELKGSGLTYSIVRPTAYFKSLSGQLDRLRAGKPFLVFGDGELTACKPISDRDLAEYMVRCLTDAGLQNRVLPIGGPGPALTPLEQGHLLADALGREIKVKRVPVGIMTAIIGVLSAVGVVSRRARDKAEFARIGRYYATESMLVFDKAAGRYDADATPETGTDTLAKFYQDLVAGRVTVDRGDHAVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QVJ0</accession>
    <name>A0A1M5QVJ0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycosyltransferase, GT2 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2348</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18174.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2348"/>
    <dbReference type="EnsemblBacteria" id="SHH18174">
        <property type="protein sequence ID" value="SHH18174"/>
        <property type="gene ID" value="SAMN05444003_2348"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="330"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_trans_2-like" evidence="2">
        <location>
            <begin position="22"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH18174.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="360" mass="40006" checksum="AB9C70C1994D0BD1" modified="2017-03-15" version="1">MVVTRQATSSRDANEPTIRLDIGIFAYNESQSIGLLIESLGQQTIFGSMVEDIRVRILANGCTDDTVAVATKAIAALPAAIKDCFTVHDFELGGKSRTANRFIHELSDQGADILGFMDADIALPQNDTLERMLGALDEGPELMVFNSRPVKDVSFSKRSVGPIGKIIASGGGGLTDYRKSICGQLYFIKRTMADKISFPIGLPVEDGFMRAMVVTDLFSQEEDLSRLDGDFEIFHVYESITTIRALIKHQTRLIVGSSINAIIFEELNRVADSGQSISVFLKDISENEEWLQSFLSEQLPRWPYGYVPFRIGAKRIRMFRASEQRSMRTFFVLLAGIGLDLISTINANFVMWRGRGAGHW</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QWT3</accession>
    <name>A0A1M5QWT3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2358</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18381.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH18381">
        <property type="protein sequence ID" value="SHH18381"/>
        <property type="gene ID" value="SAMN05444003_2358"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="92"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH18381.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="129" mass="13485" checksum="D31283C9362314F6" modified="2017-03-15" version="1">MNNSLIDLRSLENATNFARSNGPLPFVELLQAQFENVVLGRNLFHAPNLIDGNTVPGLDLSSKFEPSYQGRLVLGEAGTSLQTAYGNSGLGIIPAPNAPIPTTGESAEDDFFGNLRPASSGAGALQPSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QY42</accession>
    <name>A0A1M5QY42_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Mg-protoporphyrin IX methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2398</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19117.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901354.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2398"/>
    <dbReference type="EnsemblBacteria" id="SHH19117">
        <property type="protein sequence ID" value="SHH19117"/>
        <property type="gene ID" value="SAMN05444003_2398"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046406">
        <property type="term" value="F:magnesium protoporphyrin IX methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015995">
        <property type="term" value="P:chlorophyll biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010251">
        <property type="entry name" value="Mg_prot_MeTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010940">
        <property type="entry name" value="Mg_prot_MeTrfase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007848">
        <property type="entry name" value="Small_mtfrase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07109">
        <property type="entry name" value="Mg-por_mtran_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05175">
        <property type="entry name" value="MTS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02021">
        <property type="entry name" value="BchM-ChlM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51556">
        <property type="entry name" value="SAM_MT_MG_PIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="MTS" evidence="1">
        <location>
            <begin position="44"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="domain" description="Mg-por_mtran_C" evidence="2">
        <location>
            <begin position="129"/>
            <end position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH19117.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="229" mass="25280" checksum="D154214BC9E9ACEE" modified="2017-03-15" version="1">MTSYSATRDRVEDYFDRTATKTWERLTSDAPVSGVRATVRAGRDQMRALMLRQLPEDLTGMRILDAGCGTGAMAVELAQRGAQVVAVDISPALIEIAKQRVPSNVANRIEWVAGDMLDNTSGRFDHALAMDSLIYYDADDIAALLNKAIERIDGKFIFTLAPRTRMLMVMWRVGKLFPRKDRSPTMVPHTTAGIATALRSSGSKGPLKEIERIKSGFYISTAFSYEGAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QYM6</accession>
    <name>A0A1M5QYM6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative photosynthetic complex assembly protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2402</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19202.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901360.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2402"/>
    <dbReference type="EnsemblBacteria" id="SHH19202">
        <property type="protein sequence ID" value="SHH19202"/>
        <property type="gene ID" value="SAMN05444003_2402"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017495">
        <property type="entry name" value="Photo_alph_chp1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03054">
        <property type="entry name" value="photo_alph_chp1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH19202.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="152" mass="16394" checksum="E7266728D0586049" modified="2017-03-15" version="1">MSQLEQQMRHRDKEMVPTLLVKAMFGLMLATTGIVAYAQWSGTPDVGVLEAAPIEKSREIVLIGDRSGVYTAQELDGTVLAVSSDSKAGFLGVMGRVVDRERMLQDRSSDAPITVVRRTNGNTAILDETTGMAVELIGYGADNVAAFAQFLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QZT8</accession>
    <name>A0A1M5QZT8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Ubiquinol-cytochrome c reductase cytochrome c1 subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">SAMN05444003_2422</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10 11">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19602.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901390.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2422"/>
    <dbReference type="EnsemblBacteria" id="SHH19602">
        <property type="protein sequence ID" value="SHH19602"/>
        <property type="gene ID" value="SAMN05444003_2422"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002326">
        <property type="entry name" value="Cyt_c1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10266">
        <property type="entry name" value="PTHR10266"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02167">
        <property type="entry name" value="Cytochrom_C1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00603">
        <property type="entry name" value="CYTOCHROMEC1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 6" id="KW-0349">Heme</keyword>
    <keyword evidence="5 6" id="KW-0408">Iron</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0732">Signal</keyword>
    <keyword evidence="2 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="8">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012183631" evidence="8">
        <location>
            <begin position="21"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="254"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="9">
        <location>
            <begin position="44"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="SHH19602.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="284" mass="31155" checksum="B6158DF35DFBE82F" modified="2017-03-15" version="1">MFRKLTLAAALTLAAPAAYAAGAEAHIEDFDFSFEGPFGSFDQMQLQRGLKVYTEVCAACHGLEQVAFRNLSDPGGPSFPEDQMRAYAEFYEVWDPALFDGEGDFRVATPADKFPASSLSNAPDLSLMAKARAGFHGPYGLGINQLVKGMGGPEYIASLLVSYEEEPECAANMEVPMDGFYNSAFPNGGYPDECKYEDGSHKYPGSWIAMSQPLDDGWVEFDDGHANDLHHMAEDVAAFLMWTAEPKLVARKQAGLTGVLFLTLLSVLLYLTNKKIWAPHKRKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R0P0</accession>
    <name>A0A1M5R0P0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Mg-protoporphyrin IX chelatase</fullName>
            <ecNumber evidence="5">6.6.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2410</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>ATP + H2O + Mg(2+) + protoporphyrin IX = ADP + 3 H(+) + Mg-protoporphyrin IX + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13961"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57306"/>
            <dbReference type="ChEBI" id="CHEBI:60492"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.6.1.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="5">Porphyrin-containing compound metabolism; bacteriochlorophyll biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the Mg-chelatase subunits D/I family.</text>
    </comment>
    <dbReference type="EC" id="6.6.1.1" evidence="5"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19363.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901370.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2410"/>
    <dbReference type="EnsemblBacteria" id="SHH19363">
        <property type="protein sequence ID" value="SHH19363"/>
        <property type="gene ID" value="SAMN05444003_2410"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00669"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016851">
        <property type="term" value="F:magnesium chelatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030494">
        <property type="term" value="P:bacteriochlorophyll biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015979">
        <property type="term" value="P:photosynthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045006">
        <property type="entry name" value="CHLI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041628">
        <property type="entry name" value="ChlI/MoxR_AAA_lid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011775">
        <property type="entry name" value="Mg_chelatase_ATPase-isu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000523">
        <property type="entry name" value="Mg_chelatse_chII-like_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32039">
        <property type="entry name" value="PTHR32039"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17863">
        <property type="entry name" value="AAA_lid_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01078">
        <property type="entry name" value="Mg_chelatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02030">
        <property type="entry name" value="BchI-ChlI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0077">Bacteriochlorophyll biosynthesis</keyword>
    <keyword evidence="5" id="KW-0149">Chlorophyll biosynthesis</keyword>
    <keyword evidence="5" id="KW-0436">Ligase</keyword>
    <keyword evidence="3 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-0602">Photosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="6">
        <location>
            <begin position="28"/>
            <end position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001499"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005799"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362087"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH19363.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="334" mass="36500" checksum="DDB0184E746A3A66" modified="2017-03-15" version="1">MTQPFPFSAIVGQEEMKLAIILTAIDQSIGGVLVFGDRGTGKSTAVRALAALLPPITAVVGCPVNSPDKESMPDWVKLDSFDTAEKQTPVVDLPLGVSEDRVTGALDIEKALTKGEKAFEPGLLASANRGFLYIDEVNLLEDHIVDLLLDVAQSGENLVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSLDVGSPKDIDTRIEVIRRRDAYENDYNAFMKLWTAEDATIRDQIVTARKQLALLAVTDDVLRDVAELCLALGSDGLRGELTLLKAARAYAAWLCAKEITRDHVKTVAPMALRHRLRRDPLDDAGSTARVDRVLEDVLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RD52</accession>
    <name>A0A1M5RD52_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2508</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901597.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2508"/>
    <dbReference type="EnsemblBacteria" id="SHH23969">
        <property type="protein sequence ID" value="SHH23969"/>
        <property type="gene ID" value="SAMN05444003_2508"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021253">
        <property type="entry name" value="DUF2796"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10986">
        <property type="entry name" value="DUF2796"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013245994" evidence="2">
        <location>
            <begin position="19"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="94"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="113"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH23969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="220" mass="24104" checksum="8FB94009676189BA" modified="2017-03-15" version="1">MKPAISLLALLAVSPALADGTREVDAHVHGVGKLNIAIDGTTVAKEFHAPGADIVGFEYKAENDEDLAAIEAALQTLSDPLNLFGWPEAAECTVTSASAELETEEEHDDHGDDDHDDHDHDKEDDHGDHDEDHDEEDNHDHDEHADHDDHDHAEEASHTEFHAEYRFDCANPDALTELSFTYFDVFDNALEVEVQIITASGASAFEVERDAPTLDLSSAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RFS4</accession>
    <name>A0A1M5RFS4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2568</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25207.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901687.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH25207">
        <property type="protein sequence ID" value="SHH25207"/>
        <property type="gene ID" value="SAMN05444003_2568"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="54"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH25207.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="95" mass="10818" checksum="94D13E1A1D9498AB" modified="2017-03-15" version="1">MILSRALAKHRISSGEHPKWVAAWLPVVVDGAVLFTILYLAFPWVTDLLDGSSLGLVFAFFFLFYFVPIQIVLIWSALWAAKSRNTHDDNDQRPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RGL1</accession>
    <name>A0A1M5RGL1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Carbohydrate ABC transporter membrane protein 2, CUT1 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2574</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25328.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901694.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2574"/>
    <dbReference type="EnsemblBacteria" id="SHH25328">
        <property type="protein sequence ID" value="SHH25328"/>
        <property type="gene ID" value="SAMN05444003_2574"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="26"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="98"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="129"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="180"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="224"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="285"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="94"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH25328.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="319" mass="35393" checksum="BD6F91DC64B3E919" modified="2017-03-15" version="1">MTDATVNALSGPKGPKPKKVFSSTNIIIYGTLFVVCMYYLLPLYVMIVTSLKGMPEIRLGNIFSPPVEVTYEPWVKAWAEACTGINCDGLSRGFWNSVWILIPSVFLSIAIASVNGYALANWKFKGSEVFFTILIFGAFIPYQVMIYPIVILLRESGDGITAFIRIFNSDADNFRLMGSLWGLVIVHTIFGMPILTLLFRNYFTSVPEELFKAARVDGAGFWGIYFRIMLPMSLPIFVVAMILQVTGIWNDFLFGVIYTKPDTYPMTVQLNNIVNSVQGIKEYNVNMAATLLTGLVPLVIYFASGKLFVRGIAAGAVKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RHY1</accession>
    <name>A0A1M5RHY1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gamma-glutamyltransferase 2. Threonine peptidase. MEROPS family T03</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2600</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25874.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901734.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2600"/>
    <dbReference type="EnsemblBacteria" id="SHH25874">
        <property type="protein sequence ID" value="SHH25874"/>
        <property type="gene ID" value="SAMN05444003_2600"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.246.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043138">
        <property type="entry name" value="GGT_lsub_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043137">
        <property type="entry name" value="GGT_ssub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH25874.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="525" mass="55659" checksum="5C32D4369A7BDE49" modified="2017-03-15" version="1">MRDFHLPGRSAVYATNGICATSHPLAANVAVQILESGGNAMDAAIAGAVLLGICEPQMTGIGGDCFALFTAPGDDKVYALNGSGRAPAGTDAAALRATGHSVIPPYDPAAITVPGAVDAFCKLSKDWGKVGLKASLAPAIHYAEAGVPVAPRVAKDWSQDYEKLQGRAKESFLVGGKVPQVGTLFRAPDQAEVLRRIAMDGREAFYEGEIAEDMVNTLRGMGGVHTLDDFAATACDYTTPIQGEYGNYELFEHPPNGQGATAVLILNMLKHFDLAGMDPFGAERLHIEAEATKLGYDARNRFLSDMDHMERLEHMLAPETAAKLAALIDPKKVLPAGLPGAEQVHKDTIYITVVDKDRMAVSLIYSIFHGFGSGIASDKFGILFQNRGSGFTLEEGHPNEAGPGKRPMHTIIPGILQQNGKTVAPFGVMGGQYQSTGHARFLSNIADYGMDMQAALDAPRAFVEGDIVKVERGYSDAVRAELSDLGHTVEIPDTAIGGAQVIKIHDNGTLEGASDPRKDGCAIGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RHY5</accession>
    <name>A0A1M5RHY5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, XRE family with cupin sensor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2603</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25935.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901740.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH25935">
        <property type="protein sequence ID" value="SHH25935"/>
        <property type="gene ID" value="SAMN05444003_2603"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013096">
        <property type="entry name" value="Cupin_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07883">
        <property type="entry name" value="Cupin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="16"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH25935.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="189" mass="21320" checksum="6DC111AB33CE9F2E" modified="2017-03-15" version="1">MLHKTLDETQTLGADIRALRKARGLTLSDLAERLGKSVGWLSQVERDISDPSIDDLRLLASQLDVSMSSLFRTKAAAGEEGYVVRKDARRPIGSREAGLVEELLSPDLTDDFEVVHSTFEPNAERRDDTARPTQEVGYIVSGQLELWIKDQKFQLKPGDSFRIRGETYRWRNPHSEPCVAIWVIAPPVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RJX9</accession>
    <name>A0A1M5RJX9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 11">DNA-directed RNA polymerase subunit omega</fullName>
            <shortName evidence="11">RNAP omega subunit</shortName>
            <ecNumber evidence="2 11">2.7.7.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10 11">RNA polymerase omega subunit</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9 11">Transcriptase subunit omega</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">rpoZ</name>
        <name evidence="12" type="ORF">SAMN05444003_2633</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8 11">
            <text>a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate + RNA(n+1)</text>
            <dbReference type="Rhea" id="RHEA:21248"/>
            <dbReference type="Rhea" id="RHEA-COMP:14527"/>
            <dbReference type="Rhea" id="RHEA-COMP:17342"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61557"/>
            <dbReference type="ChEBI" id="CHEBI:140395"/>
            <dbReference type="EC" id="2.7.7.6"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="11">The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 11">Belongs to the RNA polymerase subunit omega family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.6" evidence="2 11"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26597.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901789.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2633"/>
    <dbReference type="EnsemblBacteria" id="SHH26597">
        <property type="protein sequence ID" value="SHH26597"/>
        <property type="gene ID" value="SAMN05444003_2633"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003899">
        <property type="term" value="F:DNA-directed 5'-3' RNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006351">
        <property type="term" value="P:transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.940.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00366">
        <property type="entry name" value="RNApol_bact_RpoZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003716">
        <property type="entry name" value="DNA-dir_RNA_pol_omega"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006110">
        <property type="entry name" value="Pol_omega/Rpo6/RPB6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036161">
        <property type="entry name" value="RPB6/omega-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34476">
        <property type="entry name" value="PTHR34476"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01192">
        <property type="entry name" value="RNA_pol_Rpb6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01409">
        <property type="entry name" value="RNA_pol_Rpb6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63562">
        <property type="entry name" value="SSF63562"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00690">
        <property type="entry name" value="rpoZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 11 12" id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword evidence="6 11" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 11" id="KW-0804">Transcription</keyword>
    <keyword evidence="5 11" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006711"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013725"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00024550"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00029924"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00030998"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00366"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHH26597.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="117" mass="13190" checksum="2CB46F2EDF5759F4" modified="2017-03-15" version="1">MARVTVEDCVDKVPNRFELVMLAAHRAREISAGSPITVDRDNDKNPVVSLREIADETQQADDLRERLIEANQHQIEVDEPEEDSMSLLMGAESDKPAEDDMSEENLLRALMEAQGQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RK46</accession>
    <name>A0A1M5RK46_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2616</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26203.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901760.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH26203">
        <property type="protein sequence ID" value="SHH26203"/>
        <property type="gene ID" value="SAMN05444003_2616"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH26203.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="68" mass="7887" checksum="E29BFDF6AA9B3D74" modified="2017-03-15" version="1">MEISTFVSGYFVGLVAGAGVFVWWTYKFGRFLPKEWPLTRAKLADWIRGDKDVSFYSRRVQSHMPPAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RLS9</accession>
    <name>A0A1M5RLS9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">3-hydroxyacyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2655</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the 3-hydroxyacyl-CoA dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH27109.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901922.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2655"/>
    <dbReference type="EnsemblBacteria" id="SHH27109">
        <property type="protein sequence ID" value="SHH27109"/>
        <property type="gene ID" value="SAMN05444003_2655"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070403">
        <property type="term" value="F:NAD+ binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016616">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044248">
        <property type="term" value="P:cellular catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006631">
        <property type="term" value="P:fatty acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901575">
        <property type="term" value="P:organic substance catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022694">
        <property type="entry name" value="3-OHacyl-CoA_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006180">
        <property type="entry name" value="3-OHacyl-CoA_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006176">
        <property type="entry name" value="3-OHacyl-CoA_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006108">
        <property type="entry name" value="3HC_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00725">
        <property type="entry name" value="3HCDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02737">
        <property type="entry name" value="3HCDH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000105">
        <property type="entry name" value="HCDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00067">
        <property type="entry name" value="3HCDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0520">NAD</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="3HCDH_N" evidence="5">
        <location>
            <begin position="5"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="domain" description="3HCDH" evidence="4">
        <location>
            <begin position="187"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="10"/>
            <end position="15"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="33"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="92"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="97"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="119"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="143"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="274"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="site" description="Important for catalytic activity" evidence="2">
        <location>
            <position position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009463"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000105-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000105-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00725"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH27109.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="291" mass="31805" checksum="FAA42A564EAB7716" modified="2017-03-15" version="1">MTIRQVGIVGAGQMGNGIAHVFALSGYDVMMNDINEDALRSAVALIDKNLERQVLKEAISTADKAAAMSRIKTTTALAELGPSDLIIEAATERETIKTAIFEDLLPHIKPETILTSNTSSISITRLASRTDRPEKFLGFHFMNPVPIMQLVELIRGIATDEATFNSCKEVVDRLGKTAATAEDFPAFIVNRILMPMINEAIYTLYEGVGSVQSIDTSLKLGANHPMGPLELADFIGLDTCLAIMNVLHDGLADTKYRPCPLLTKYVEAGWLGRKTKRGFYDYSGDKPVPTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RM85</accession>
    <name>A0A1M5RM85_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">SH3 domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2662</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH27279.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901835.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2662"/>
    <dbReference type="EnsemblBacteria" id="SHH27279">
        <property type="protein sequence ID" value="SHH27279"/>
        <property type="gene ID" value="SAMN05444003_2662"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003646">
        <property type="entry name" value="SH3-like_bac-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08239">
        <property type="entry name" value="SH3_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00287">
        <property type="entry name" value="SH3b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51781">
        <property type="entry name" value="SH3B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SH3b" evidence="1">
        <location>
            <begin position="134"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH27279.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="198" mass="21306" checksum="5A529812BDAA87F6" modified="2017-03-15" version="1">MSKFVFGTFMVLGLAFYILSDGPDFVPEERVVAEVEPEIIKEPVVGVEEIAVVEPVEDEPVVEVQTTRADTSALLNLSTAELTPTEPEPVFTSLATPLAEPETNDADVVAVLATLVDDVTEELAVEVAAVEPDLDMRFVSGSRVNMRSGPGTNYSVLDTLDGGTAAEVLEVDASGWARIRLPDSNRIGWMAERLLTTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-09-29" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RND0</accession>
    <name>A0A1M5RND0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2679</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH27669.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH27669">
        <property type="protein sequence ID" value="SHH27669"/>
        <property type="gene ID" value="SAMN05444003_2679"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH27669.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="226" mass="26195" checksum="298C72F9B550266E" modified="2017-03-15" version="1">MLILREQKLLFVKTKKTAGTSIEILLSEHLQQGDFATPLLPDEEKLRPKKRKIVRESVRLLRERAQGKVRARYPHLGLDVAESYLDDISSGCESFCVERNPWDKAVSAFFFWMHRRGGPITDIDRQFTAFCKKQLSYFSDFDMYSRDGRLAAGFVARYENLAVDLNEFLGSRGLSDFDISQMNAKSNVRKKRTLEEFFGENFDNKNAKRVAKIFEREIETSGYQPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RNX5</accession>
    <name>A0A1M5RNX5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2689</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH27889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH27889">
        <property type="protein sequence ID" value="SHH27889"/>
        <property type="gene ID" value="SAMN05444003_2689"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH27889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="38" mass="4095" checksum="B28DED58F854C6A2" modified="2017-03-15" version="1" fragment="single">MGRGPYQASIAFIKRSLMMTGSMVMTGILALPLSHLTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RUA6</accession>
    <name>A0A1M5RUA6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Proline racemase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2693</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the proline racemase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH29741.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901934.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2693"/>
    <dbReference type="EnsemblBacteria" id="SHH29741">
        <property type="protein sequence ID" value="SHH29741"/>
        <property type="gene ID" value="SAMN05444003_2693"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008794">
        <property type="entry name" value="Pro_racemase_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33442">
        <property type="entry name" value="PTHR33442"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05544">
        <property type="entry name" value="Pro_racemase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF029792">
        <property type="entry name" value="Pro_racemase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00028">
        <property type="entry name" value="Proline_Racemase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH29741.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="341" mass="36217" checksum="79632136952439F2" modified="2017-03-15" version="1">MLSSKIIHVVSAHAEGEVGDVIVGGVAPPPGDTLWAQRSFISKDDLLRQFVLNEPRGGVFRHVNLLVPPKNPQADAAFIIMEPEDTPPMSGSNSICVATVLLDTGLVEMKEPVSELVLEAPGGLVKVRAECENGKAKRIFVQNLPSFANKLRVPLEVPGLGTLTVDTAYGGDSFVLVDAAALGFEIVAGEAKDIAQLGVKITNAANAQLGFTHPENTHWDHISFCAFCGPIEETETGLRAKSAVAIQPGKVDRSPTGTAVSARMAVLAAEGRMQSGQKFEAVSIIGSRFTGRIVGATEVEGRSAIIPEISGRAWLTATHQHMLDPTDPWPNGYRLSDTWGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RVC6</accession>
    <name>A0A1M5RVC6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_2718</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the TPP enzyme family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30272.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902224.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2718"/>
    <dbReference type="EnsemblBacteria" id="SHH30272">
        <property type="protein sequence ID" value="SHH30272"/>
        <property type="gene ID" value="SAMN05444003_2718"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016823">
        <property type="term" value="F:hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019310">
        <property type="term" value="P:inositol catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030817">
        <property type="entry name" value="Myo_inos_IolD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012000">
        <property type="entry name" value="Thiamin_PyroP_enz_cen_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012001">
        <property type="entry name" value="Thiamin_PyroP_enz_TPP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000399">
        <property type="entry name" value="TPP-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045229">
        <property type="entry name" value="TPP_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011766">
        <property type="entry name" value="TPP_enzyme-bd_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18968">
        <property type="entry name" value="PTHR18968"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18968:SF9">
        <property type="entry name" value="PTHR18968:SF9"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02775">
        <property type="entry name" value="TPP_enzyme_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00205">
        <property type="entry name" value="TPP_enzyme_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02776">
        <property type="entry name" value="TPP_enzyme_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="SSF52467"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04377">
        <property type="entry name" value="myo_inos_iolD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00187">
        <property type="entry name" value="TPP_ENZYMES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0786">Thiamine pyrophosphate</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TPP_enzyme_N" evidence="7">
        <location>
            <begin position="11"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="domain" description="TPP_enzyme_M" evidence="5">
        <location>
            <begin position="223"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="domain" description="TPP_enzyme_C" evidence="6">
        <location>
            <begin position="434"/>
            <end position="573"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="603"/>
            <end position="622"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="608"/>
            <end position="622"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007812"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU362132"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH30272.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="622" mass="67087" checksum="B7FB7DA96C3B2C1B" modified="2017-03-15" version="1">MVDKPETVTLTTAQAIVRYLAAQYIEIDGVKTRVCGGGFGIFGHGNVTCLGEALYDHRDVLPTYRGQNEQGMGFAAAAYAKAYLRRRFMFCTASAGPGTANLLTSAALAHANRLPMLLLCGDAFLTRLPDPVLQQLEHFGNPTFGVNDAFRAVSRYWDRITHPAQIIQSLPAALNTMLDPVDCGPAFIGLPQDVQGWTYDYPVSFFEERVHRIRRQMPDAAEINDAIVLLKTAERPMIIAGGGVQYSGAVAELTEFAETAGIPVVETIAGRANMVAEHPLNIGPIGVTGSDSANAIAEKADVILAVGTRLQDFTTGSWTAFRPDAKFIGINVGRHDAAKHMSMTVVGDAKLALDQLTMGGGYKAPSSWTKEAQAERAKWDDYVAENVRIGNRPASYAQAIGAVNAACDPRDRVVAAAGGLPAEVTANWRTLDIGTVDVEFGFSCMGYEIAGGWGARIAQSEMEPDKDTIVFTGDGSYLLMNSDIYSSVLTQKKMIVLVLDNGGFAVINKLQNNTGNESFNNLISDTPTATEQVEVDFEAHARSMGTLAETVENPADLAEAFARAKAADRTYVICMKVDAYEGWTTEGHTWWEVGTPHISTSDTVTAAHKDVESTRARQRKGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RY16</accession>
    <name>A0A1M5RY16_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5 6">50S ribosomal protein L19</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rplS</name>
        <name evidence="7" type="ORF">SAMN05444003_2747</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 6">This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the bacterial ribosomal protein bL19 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH30918.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902018.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2747"/>
    <dbReference type="EnsemblBacteria" id="SHH30918">
        <property type="protein sequence ID" value="SHH30918"/>
        <property type="gene ID" value="SAMN05444003_2747"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.790">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00402">
        <property type="entry name" value="Ribosomal_L19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038657">
        <property type="entry name" value="L19_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001857">
        <property type="entry name" value="Ribosomal_L19"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018257">
        <property type="entry name" value="Ribosomal_L19_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008991">
        <property type="entry name" value="Translation_prot_SH3-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15680">
        <property type="entry name" value="PTHR15680"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01245">
        <property type="entry name" value="Ribosomal_L19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002191">
        <property type="entry name" value="Ribosomal_L19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00061">
        <property type="entry name" value="RIBOSOMALL19"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50104">
        <property type="entry name" value="SSF50104"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01024">
        <property type="entry name" value="rplS_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01015">
        <property type="entry name" value="RIBOSOMAL_L19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 7" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00402"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH30918.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="129" mass="14232" checksum="3AEF0EADBB5905F7" modified="2017-03-15" version="1">MDLIAQLEAEQIAALGKDIPDFKAGDTIRVGYKVTEGSRSRVQNYEGVCISRKNGNGIAGSFTVRKISFGEGVERVFPLHSTNIDSITVVRRGRVRRAKLYYLRSRRGKSARIAEVTNYKAPKSANADA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S295</accession>
    <name>A0A1M5S295_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Cytochrome c peroxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2817</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32565.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2817"/>
    <dbReference type="EnsemblBacteria" id="SHH32565">
        <property type="protein sequence ID" value="SHH32565"/>
        <property type="gene ID" value="SAMN05444003_2817"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004601">
        <property type="term" value="F:peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004852">
        <property type="entry name" value="Di-haem_cyt_c_peroxidsae"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03150">
        <property type="entry name" value="CCP_MauG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00034">
        <property type="entry name" value="Cytochrom_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0349">Heme</keyword>
    <keyword evidence="3 4" id="KW-0408">Iron</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013359390" evidence="5">
        <location>
            <begin position="21"/>
            <end position="439"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="6">
        <location>
            <begin position="256"/>
            <end position="417"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH32565.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="439" mass="47259" checksum="2A3EF7629FC5157B" modified="2017-03-15" version="1">MSIRAILPLVLIGTGMAAQAVELPAAIEDQDYRAINKDAVPLGRDLFYDPILSGNKSIACATCHHPRFATGDGVSLSFGDGGVGLGPDRVFDPDNKPEERIPRNAPALFNLGAHEFRVMFHDGRLEEDASFPGGIRTPLDSDMLQGFESVLSAQTMFPVLSRDEMAGSYGENDVAQAVRQGRITGDGGAWDILTKRVGDIPGYADLFVEVYDHVDTPDDITFADISNAIASFMEWEWRSDQSKFDAVLRGDEELAGAELRGMELFYGSANCASCHRGPFQTDHKFHAMGAPQIGPGKSATFETHYRDDGRFRVTGNESDRYAFRTPSLRNIAATGPYGHAGAHSDLAQFVSAHANPIVGLQNYDIASAILPAFDHEDATIMSDEAEVDAIAKAVSVVTIKLSPSDISDLVAFLQTLTDQNSIDGRLGVPATVPSGLPVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SE09</accession>
    <name>A0A1M5SE09_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">C4-dicarboxylate-binding protein DctP</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2916</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial solute-binding protein 7 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36670.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902311.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2916"/>
    <dbReference type="EnsemblBacteria" id="SHH36670">
        <property type="protein sequence ID" value="SHH36670"/>
        <property type="gene ID" value="SAMN05444003_2916"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030288">
        <property type="term" value="C:outer membrane-bounded periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071702">
        <property type="term" value="P:organic substance transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018389">
        <property type="entry name" value="DctP_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004682">
        <property type="entry name" value="TRAP_DctP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038404">
        <property type="entry name" value="TRAP_DctP_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33376">
        <property type="entry name" value="PTHR33376"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03480">
        <property type="entry name" value="DctP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006470">
        <property type="entry name" value="DctB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00787">
        <property type="entry name" value="dctP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0574">Periplasm</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012567620" evidence="6">
        <location>
            <begin position="23"/>
            <end position="338"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH36670.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="338" mass="36731" checksum="2B9DD2CA5F1F9242" modified="2017-03-15" version="1">MKFFKLTASAAVLAMAAPMAMADGHGAGCDDGEIVVKFSHVTNTDRHPKGIAASLLAERVNTEMDGTMCMEVFPSSQLYNDDQVLEAMLQGDVQLAAPSLSKFEAFTKQFRIFDLPFMFANIDAVDAFQASETGQAMKDSMQRRGLQGLAFWHNGMKQFSANVPLVDPSDADGLKFRVQNSDVLVAQMSALGASPQPMAFSEVYGALQTGVVDGQENTWSNIFGQKFFEVQDGVTETNHGIIDYLVVTSTDFLDGLDPEVREQFLTILDEVTATRNGEAFAVNEEAKQAIIDAGGEVRQLTAEQRAAWVDAMKPVWDQFVGDVGQENIDAAQAINASM</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SF23</accession>
    <name>A0A1M5SF23_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2938</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37197.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902539.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2938"/>
    <dbReference type="EnsemblBacteria" id="SHH37197">
        <property type="protein sequence ID" value="SHH37197"/>
        <property type="gene ID" value="SAMN05444003_2938"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007475">
        <property type="entry name" value="UbiK"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04380">
        <property type="entry name" value="BMFP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH37197.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="81" mass="9199" checksum="9673AE6D23B3153C" modified="2017-03-15" version="1">MNQRSKIFDDLSQLMTNAMGVAQGAKDEANTAMKSMMDRWMADRDFVTREEFDAVRAMAQKAREENAALLARIEALEAKKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SGT4</accession>
    <name>A0A1M5SGT4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2958</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37630.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902379.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH37630">
        <property type="protein sequence ID" value="SHH37630"/>
        <property type="gene ID" value="SAMN05444003_2958"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH37630.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="261" mass="29584" checksum="146B4B12A2DD0A6A" modified="2017-03-15" version="1">MNGEATNKDSLLESWIEKFVFELGKYLKQSNTESLVDKYQKRLDQIAQIKVVSLNYDRVFEARSRLAASRLFDVDFLTWQQKNILKWPAPTLSFEIHQPHGTLGLLSGHSQKGSASNVPMYLFEKVGFRIRLFAQSPISNPRNQLEFGDIKAFTEACENRPTDFEPELNIVSVDDFIPGASLSGYELANQRINNTNVICIGISDLGFNQSRLDFSNAKSVTLTNRESELRQFDKSKLPTDQNIFFEPGGLFADNLLAKMCV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SS91</accession>
    <name>A0A1M5SS91_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Peptidase_M75 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3073</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41330.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902608.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3073"/>
    <dbReference type="EnsemblBacteria" id="SHH41330">
        <property type="protein sequence ID" value="SHH41330"/>
        <property type="gene ID" value="SAMN05444003_3073"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd14659">
        <property type="entry name" value="Imelysin-like_IPPA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1420.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018976">
        <property type="entry name" value="Imelysin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034984">
        <property type="entry name" value="Imelysin-like_IPPA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038352">
        <property type="entry name" value="Imelysin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09375">
        <property type="entry name" value="Peptidase_M75"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Peptidase_M75" evidence="2">
        <location>
            <begin position="32"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09375"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH41330.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="295" mass="33060" checksum="53424FAC901A5E3C" modified="2017-03-15" version="1">MKHIFAIGIIFQATLAHADQRQIIQDTVQNHILPRYEALKETTTALSETAMMDCLPESEPLRAAYNEAFDDWIAVSHLRFGPSETDDRAFALAFWPDPRGSTPKTLGRLLSNSDEAGLNVEDFSDVSIAARGFYAMEFLLYEDALRDVGEEDYRCSLIQTAAADIAESANAIADDWEVDFSETLLSPSGLFKNDQEVIQELFKALTLGFQFTSESRIGRPLADLDRPRPRRAEAWRSGRSSRNIEVSIATLADLAERLSADRTDLQPRLADRFGHCWKLCDRPAPLKQSSSDNAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SW71</accession>
    <name>A0A1M5SW71_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Sulfate permease, SulP family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_3128</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 5">Membrane</location>
            <topology evidence="1 5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the SLC26A/SulP transporter (TC 2.A.53) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42273.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902686.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3128"/>
    <dbReference type="EnsemblBacteria" id="SHH42273">
        <property type="protein sequence ID" value="SHH42273"/>
        <property type="gene ID" value="SAMN05444003_3128"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008271">
        <property type="term" value="F:secondary active sulfate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.750.24">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011547">
        <property type="entry name" value="SLC26A/SulP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001902">
        <property type="entry name" value="SLC26A/SulP_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002645">
        <property type="entry name" value="STAS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036513">
        <property type="entry name" value="STAS_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11814">
        <property type="entry name" value="PTHR11814"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01740">
        <property type="entry name" value="STAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00916">
        <property type="entry name" value="Sulfate_transp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52091">
        <property type="entry name" value="SSF52091"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50801">
        <property type="entry name" value="STAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="39"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="85"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="117"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="162"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="193"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="234"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="313"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="335"/>
            <end position="354"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="375"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="domain" description="STAS" evidence="6">
        <location>
            <begin position="426"/>
            <end position="538"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH42273.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="551" mass="57125" checksum="C962267801181720" modified="2017-03-15" version="1">MAEKKNSLGPDLSSGLTVALVSIPEGMAYALVAGVNPVYGLYTGMLTTIVASLTGSTSLLIVTLTNALALVAGDQLAGLDTDDPIRALATLTFLVGIMMTLLGALRMGSMIKFVSREVMAGFIFVTALLIVLGQLKDLVGYHPEGTQGKFSQAIAILSNPGAWSSTTTILGIAGIAFLLAVKATPIKRYADVLVILFTTLAVALLGLAGIELVGDIAEVPRGLDALPSFVLPDFTLIPVLLAGAFAATVVGLSESSGVGAAYPNPNGKKSDMSKDFLGQGLGNLAGSFFQAMPAGGSLSRTGINASGGAQTRLSGVFSGLLLAAVLILFGNSAELIPLAGLAALLIVIGAEIMIKEGRVLVRAWNTSRYNTLIAVATIILGVSHDLTVAIFGGVILSLIAYSVNASNRVKFFALEPTSDGKWIERPAPETLEPSKTTALEMRGPLNFASVYSFAELLPDSKDAKGATLILSCQDQELQSLTGIDWLKNFVDDLTAAEVRLILAEVSAELMGDLKTSGLADKLGSTNIFPASEVKLASLDAAYASTQAPDTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SX00</accession>
    <name>A0A1M5SX00_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Chaperone required for the assembly of the F1-ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_3148</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Mitochondrion</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ATP12 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42633.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902719.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3148"/>
    <dbReference type="EnsemblBacteria" id="SHH42633">
        <property type="protein sequence ID" value="SHH42633"/>
        <property type="gene ID" value="SAMN05444003_3148"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043461">
        <property type="term" value="P:proton-transporting ATP synthase complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011419">
        <property type="entry name" value="ATP12_ATP_synth-F1-assembly"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042272">
        <property type="entry name" value="ATP12_ATP_synth-F1-assembly_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023335">
        <property type="entry name" value="ATP12_ortho_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21013">
        <property type="entry name" value="PTHR21013"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07542">
        <property type="entry name" value="ATP12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0143">Chaperone</keyword>
    <keyword evidence="4" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0809">Transit peptide</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH42633.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="236" mass="25791" checksum="2C49A1414DA2AF4F" modified="2017-03-15" version="1">MSEWKAKRFWSEAAVKASEDGYSVLLDGRPVKTPAKTHLVVPTDAMAQAIAAEWDAQEEAIDPLTMPVTRGANAALDKVSVQFKEVAEMLAEYGDTDLLCYRAEGPEGLVQRQTSLWDPLLDWAHDTYDARLLPAQGVIHVAQDGAALAKLSAPVQAMTAFELAGFHDLVSISGSLVLGLAVTHGRLPAEEAWALSRLDEDWQIEQWGPDEEAEAVADKKKADFLNAAKFYQLSRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SXR6</accession>
    <name>A0A1M5SXR6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3183</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH43327.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH43327">
        <property type="protein sequence ID" value="SHH43327"/>
        <property type="gene ID" value="SAMN05444003_3183"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5011957395" evidence="2">
        <location>
            <begin position="29"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="79"/>
            <end position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH43327.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="100" mass="10361" checksum="01D65621825E7AF1" modified="2017-03-15" version="1">MTTNPAMTRRTFTLGTLTLAWAATSARADGGIALDGLGRAIKGYDTRAYFTESTAKLGSDAHSVDWNGATWQFASTEDAAAFAAPPKPSPRNSAATAPAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T5P4</accession>
    <name>A0A1M5T5P4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3254</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902922.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3254"/>
    <dbReference type="EnsemblBacteria" id="SHH46081">
        <property type="protein sequence ID" value="SHH46081"/>
        <property type="gene ID" value="SAMN05444003_3254"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021516">
        <property type="entry name" value="DUF3179"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11376">
        <property type="entry name" value="DUF3179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012115752" evidence="1">
        <location>
            <begin position="22"/>
            <end position="453"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH46081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="453" mass="50508" checksum="91EBD31FC827363F" modified="2017-03-15" version="1">MVRRSVLFAATLIFLPFLVSAEQRKALPDYVIAEYGVPPVIPSGSLDPIMAEALDDLVVIALNQSAWSPDDKAAFDVIAKSNDSRVIWTLTDMQRFSWRMEFHDALTQSVEDILQISFDDGQHREAIINRMIAWDIPAYPNYLEHKRSIFTNYIPGWEKLFVEGEIDWQLVDWGGVDIDARPYDATDDICHCIPAIDNPEVSSADAATWLADDDIIFGVEINGEARAYPRQIMEVREMVNDTLGGRDIALPYCSLCGAAQAYFTDRMPNGVARPVLRTSGLLIRSNKVMYDVETNSLFDTFLGTAVTGPLADLDVVLPPVTVITSTWGAWRDAFPETTVLVEELALGRDYNLRETRDARGPIFPIGDVDPRLPMQEDVVGVISSTGQPIAFPRSSAIAALKDGRSVEHIDVTLVLFADGLRALTADGQQVPSHEAYWFAWSQFYDDTIVWRGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T6V5</accession>
    <name>A0A1M5T6V5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Amino acid/amide ABC transporter substrate-binding protein, HAAT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3269</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46442.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902945.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3269"/>
    <dbReference type="EnsemblBacteria" id="SHH46442">
        <property type="protein sequence ID" value="SHH46442"/>
        <property type="gene ID" value="SAMN05444003_3269"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028081">
        <property type="entry name" value="Leu-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13458">
        <property type="entry name" value="Peripla_BP_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peripla_BP_6" evidence="1">
        <location>
            <begin position="23"/>
            <end position="350"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH46442.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="376" mass="39870" checksum="7C6C45D8E50B8136" modified="2017-03-15" version="1">MKNLFGITTALALTAAGAAADTKIGMITTLSGGGAGLGIDVRDGFMLAIAQSGRDDIEVVIEDDQRKPDIAVQLSDKMIQSEKVDIMTGIIWSNLAMAVVPSAVNQDVFYLSPNAGPSALAGAGCHENYFNVAWQNDNLHEAAGAYANGAGYSNSFILAPNYPAGKDALTGYKRFFEGELAGELYTELGQTDYAAEIAQIRASGADSVFFFLPGGMGISFLKQYSDSGVDLPVVGPAFSFDQGILQAVGAAALGVVNTSQWSKDIENATNAAFVESFQTEYGRLPSLYASQGFDTANLILSALNIANPDDADTFREALRAANFDSTRGDFMFGPNHHPVQTIYAREVVQEGEIFTNKILGTALENHADAYAGDCKM</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T7R7</accession>
    <name>A0A1M5T7R7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Amino acid/amide ABC transporter membrane protein 1, HAAT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_3268</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46413.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902943.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3268"/>
    <dbReference type="EnsemblBacteria" id="SHH46413">
        <property type="protein sequence ID" value="SHH46413"/>
        <property type="gene ID" value="SAMN05444003_3268"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="20"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="61"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="97"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="142"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="191"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="225"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="273"/>
            <end position="296"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH46413.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="306" mass="31842" checksum="8C2BFCC1F364B9EE" modified="2017-03-15" version="1">MSAILVIEQILNGLQFGIMLFLMAAGLTLIFGVMGLINLAHGSLYMVGAFAAASVAGATGSFLLALVAAFTVAAFAGAIVEIVVIRRLYRAAHLDQVLATFALILIFSEGTRWVFGSFPLFLDVPSYLSGPVTLPGGIEYPLYRLTLIGVGLLVALGLWWLTARTRIGIQIRAGENDREMIAALGVDISKLYTLVFALGAALAGLAGALVGAIQSVQVGMGEPVLILAFVVIVIGGIGSIKGALIGAILVGLTDTLGGIFLPEFLKLFMESGAATQTGSALASMAVYILMSVVLIWRPTGLFGARP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T7U8</accession>
    <name>A0A1M5T7U8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Glutaredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_3285</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the DoxX family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46819.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902992.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3285"/>
    <dbReference type="EnsemblBacteria" id="SHH46819">
        <property type="protein sequence ID" value="SHH46819"/>
        <property type="gene ID" value="SAMN05444003_3285"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097573">
        <property type="term" value="F:glutathione oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032808">
        <property type="entry name" value="DoxX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002109">
        <property type="entry name" value="Glutaredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014025">
        <property type="entry name" value="Glutaredoxin_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07681">
        <property type="entry name" value="DoxX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00462">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00160">
        <property type="entry name" value="GLUTAREDOXIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="92"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="116"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="156"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="181"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="219"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="domain" description="Glutaredoxin" evidence="7">
        <location>
            <begin position="17"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHH46819.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="243" mass="26850" checksum="AE1E8FC6EB19E079" modified="2017-03-15" version="1">MAKTATLHRMVMPGHVCPFGLKSKDLLERNGYVVDDQHLTTREDVDAFKAEYGVKTTPQIFIDGERIGGFDDLSAHFGKQVAKEGDVTYQPVIALFSVAALLAVAVTWLARDTLFVGQTIGWFISIAMVLLGLQKLQDIEKFATMFLNYDLLAQRWVRYGYVYPFVETGAGLLMLMGALTWLAAPAALFVAGIGAYSVFKAVYIEKRELKCACVGDARVPLGFVSLTENLMMVGMAIWMLFIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T894</accession>
    <name>A0A1M5T894_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cellulose biosynthesis protein BcsQ</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3290</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46941.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902977.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3290"/>
    <dbReference type="EnsemblBacteria" id="SHH46941">
        <property type="protein sequence ID" value="SHH46941"/>
        <property type="gene ID" value="SAMN05444003_3290"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025669">
        <property type="entry name" value="AAA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13614">
        <property type="entry name" value="AAA_31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_31" evidence="1">
        <location>
            <begin position="111"/>
            <end position="312"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH46941.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="435" mass="48908" checksum="1D0CD287F56B2486" modified="2017-03-15" version="1">MFTHEDLAQLQAESLKMQSWIRRQTFSPEMEKTLRRFSSWEVSELIFGINQSTFRGRLAAEPDLPGGEVEPDGRQRWFSLDEINVLRRRMKVNRKSLMPERPAGKRAFRAAIANFKGGAGKSTVALHFAHAAALDGYRVLCVDFDPQATLSHSMGLNDVEEDHTVWGIMARDLIRETDRMNSSAVGAASGTALPQRKIPASIRDLGLADLRIGDFIKPTAWSTIDIIPSCANAAFVEFASAQYRHLNPDWSFFAAVSRYLDAIPDDAYDLILFDCPPAIGYQSMNAVFAADMLYIPSGPGYWEYDSTTSFIGQLAEALGDLADGFPQIFPAGKVSLPKAFIDIKFLMTRYEPGNDLHRAMFDAFGRVFGDALTEHPVEMTRAVEQSGRFLSSVYEIDYRDMTRETWRRARTTFDRAYDEFKGNVLQAWDSIEVTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TAI8</accession>
    <name>A0A1M5TAI8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Predicted dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3304</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000009">
        <property type="protein sequence ID" value="SHH47734.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072903035.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000009.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3304"/>
    <dbReference type="EnsemblBacteria" id="SHH47734">
        <property type="protein sequence ID" value="SHH47734"/>
        <property type="gene ID" value="SAMN05444003_3304"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004104">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000683">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01408">
        <property type="entry name" value="GFO_IDH_MocA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02894">
        <property type="entry name" value="GFO_IDH_MocA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GFO_IDH_MocA" evidence="1">
        <location>
            <begin position="6"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="domain" description="GFO_IDH_MocA_C" evidence="2">
        <location>
            <begin position="134"/>
            <end position="344"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH47734.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="360" mass="39006" checksum="0142A78BE5988A09" modified="2017-03-15" version="1">MTQETRIAVVGFGLVGRRHVDVLMSAPGVTIASVVEADAKGRADAEELGIRVFDSLEKMFEQDKPDGVLLATPTPLHVQQGLECIANDCPTLIEKPISVTSGEALQLTNAAEMAGVPLLVGHHRRHNGMVQAAKSALVNGQVGDIRAIQTTCWFYKPDYYFDEAPWRKKKGAGPISVNLVHDVDLLRHFCGEVRTAQALSVPSRRGFENEDLASAILTFKSGAVATISVSDSIVAPWSWELTSRENPRYPATNESCYLIGGSEGGLSLPDLRVWRHESGPDWWSPINAQVLTCDSQDPLVTQMHHFARVIRGEEAPLVSGIEGLKSLEVVEAIALSAESGQAVSIASMSSRSEFKPREAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5TD10</accession>
    <name>A0A1M5TD10_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3314</name>
        <name evidence="2" type="ORF">SAMN05444003_3320</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000009">
        <property type="protein sequence ID" value="SHH47959.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="FQXB01000010">
        <property type="protein sequence ID" value="SHH48233.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH47959">
        <property type="protein sequence ID" value="SHH47959"/>
        <property type="gene ID" value="SAMN05444003_3314"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH48233">
        <property type="protein sequence ID" value="SHH48233"/>
        <property type="gene ID" value="SAMN05444003_3320"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH47959.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH48233.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="38" mass="4372" checksum="8BE2391632C873CB" modified="2017-03-15" version="1" fragment="single">MGIKRHKPEEIVTKLRQVEVLCGQGMPRIDAIRQVQIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L3U0</accession>
    <name>A0A1M5L3U0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GMP synthase-Glutamine amidotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0082</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59605.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898424.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0082"/>
    <dbReference type="EnsemblBacteria" id="SHG59605">
        <property type="protein sequence ID" value="SHG59605"/>
        <property type="gene ID" value="SAMN05444003_0082"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01741">
        <property type="entry name" value="GATase1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044992">
        <property type="entry name" value="ChyE-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017926">
        <property type="entry name" value="GATASE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42695">
        <property type="entry name" value="PTHR42695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00117">
        <property type="entry name" value="GATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GATase" evidence="1">
        <location>
            <begin position="53"/>
            <end position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG59605.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="227" mass="25060" checksum="6EC1B7C5B593E3F2" modified="2017-03-15" version="1">MKIGILHTGHAPDEVLGDLGDYDAMFARLLDGKGFTFQTWNVVDMEFPSDVHQADGWLISGSKHGAYEDHPFIPPLEDFIRAAYDAEVPTVGVCFGHQIMAQALGGKVEKFKGGWTIGPQTYDWGGTPWALNAWHQDQVIERPSSATDHAGNQFCENAILVYGDRAFTMQPHPEFGKTMIDALIQYRAQGVIPNQQIALATQGLDAANDEMKMADMIASFFKTREVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L3V9</accession>
    <name>A0A1M5L3V9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Glutamate--putrescine ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0083</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the glutamine synthetase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG59620.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898425.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0083"/>
    <dbReference type="EnsemblBacteria" id="SHG59620">
        <property type="protein sequence ID" value="SHG59620"/>
        <property type="gene ID" value="SAMN05444003_0083"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004356">
        <property type="term" value="F:glutamate-ammonia ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006542">
        <property type="term" value="P:glutamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009399">
        <property type="term" value="P:nitrogen fixation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036651">
        <property type="entry name" value="Gln_synt_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014746">
        <property type="entry name" value="Gln_synth/guanido_kin_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008146">
        <property type="entry name" value="Gln_synth_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027303">
        <property type="entry name" value="Gln_synth_gly_rich_site"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00120">
        <property type="entry name" value="Gln-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01230">
        <property type="entry name" value="Gln-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54368">
        <property type="entry name" value="SSF54368"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55931">
        <property type="entry name" value="SSF55931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00181">
        <property type="entry name" value="GLNA_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0535">Nitrogen fixation</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Gln-synt_C" evidence="4">
        <location>
            <begin position="100"/>
            <end position="347"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU000384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM01230"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG59620.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="429" mass="46148" checksum="3229179BA23205D3" modified="2017-03-15" version="1">MMARTFQCGAADLNGQLRGKRLPVEMASKVEKNGIRFPLSVFNLDIWGEDIDDSPLVFESGDADGKILPTERGPLPLPWLSEPTKLIPLWGFNEDGSPFAGCPRQALKSVVDRLASHGFTPVAANEMEFYLTDDSGPLKPIASEPGGQIMSLRALDRLDPFFAELYESCAALGIAAEATTSESGTGQFEVTIQHSADALKAADDAWFFKLLVQGLARKHGMAGTFMAKPFAEDAGNGMHSHVSLLDAKGSNVFADGSATGTVLLENAVAGCLTALQDLTLIFAPHANSYARMVPGAHAPTGICWGHDNRTVAVRIPGGDPAAKRVEHRLAGGDVNPYLSLAAILGSMLIGIEESLTPPAPVSGNAYYQDLDQVHEDWGKAIDVFEQSGTVAKIFDPKLISYFSATKRQEVRRMTSLSDQDQLRSYLDRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L6R3</accession>
    <name>A0A1M5L6R3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0107</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60103.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0107"/>
    <dbReference type="EnsemblBacteria" id="SHG60103">
        <property type="protein sequence ID" value="SHG60103"/>
        <property type="gene ID" value="SAMN05444003_0107"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028994">
        <property type="entry name" value="Integrin_alpha_N"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69318">
        <property type="entry name" value="SSF69318"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG60103.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="229" mass="24241" checksum="731690E01E8DC3ED" modified="2017-03-15" version="1">MIRWIALGALAAGAAQADIRAAEYLEPTGAYGHYVVPGGEYAQLSFELDDGARLTTKAEAGVYEDTAPRLVDIDGDGSPEVISVFSYFNAGPAIRIWDETDGQISLLAEGDPIGTRFRWLAIIGAADLDGDGQIEIAYVDRPHLAKTLRVVRVDGDSVTEVANFSGVTNHRIGEPDIAGGIRDCSDGPEMILASASWSELLAITFDGSFQATVIGADTSRPAFADAMTC</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L7V0</accession>
    <name>A0A1M5L7V0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0152</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61091.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900336.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0152"/>
    <dbReference type="EnsemblBacteria" id="SHG61091">
        <property type="protein sequence ID" value="SHG61091"/>
        <property type="gene ID" value="SAMN05444003_0152"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016054">
        <property type="term" value="P:organic acid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006115">
        <property type="entry name" value="6PGDH_NADP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015815">
        <property type="entry name" value="HIBADH-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029154">
        <property type="entry name" value="NADP-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14833">
        <property type="entry name" value="NAD_binding_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03446">
        <property type="entry name" value="NAD_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000103">
        <property type="entry name" value="HIBADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD_binding_2" evidence="2">
        <location>
            <begin position="5"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="domain" description="NAD_binding_11" evidence="3">
        <location>
            <begin position="165"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR000103-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF14833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG61091.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="294" mass="30943" checksum="773507AC93554E32" modified="2017-03-15" version="1">MSKEKISFIGAGLMGQGMASNIIRSGYNLNVIANRNRVPIEALVAAGANEVMTFQDMAKTSDIIHICAPGSPQVETIVSGLLPQLKANSVIIDCSTSDPTSTAKLAAQLAEAGCHMVDAPLGGTPVQAQAGSLSTMVGADDNIFERVKPVIECWAETVVHLGAVGMGHKMKLLNNMLSLGYGAMYSEALAVAKGVGISVEQFDSVIRGSRMDCGFYQTFIDCALNDNRESHKFTLTNAVKDLTYLESMAAAARVPNPIGNATKNSFAMAVAEGGDGAEDYIPHLPDFVAKRSGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L8Y1</accession>
    <name>A0A1M5L8Y1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Cell division protein FtsI (Penicillin-binding protein 3)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0167</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG61436.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898533.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0167"/>
    <dbReference type="EnsemblBacteria" id="SHG61436">
        <property type="protein sequence ID" value="SHG61436"/>
        <property type="gene ID" value="SAMN05444003_0167"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008658">
        <property type="term" value="F:penicillin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005311">
        <property type="entry name" value="PBP_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036138">
        <property type="entry name" value="PBP_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001460">
        <property type="entry name" value="PCN-bd_Tpept"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03717">
        <property type="entry name" value="PBP_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00905">
        <property type="entry name" value="Transpeptidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56519">
        <property type="entry name" value="SSF56519"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="5" id="KW-0132">Cell division</keyword>
    <keyword evidence="1 2" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="49"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="domain" description="PBP_dimer" evidence="4">
        <location>
            <begin position="89"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="domain" description="Transpeptidase" evidence="3">
        <location>
            <begin position="261"/>
            <end position="547"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00905"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF03717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG61436.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="594" mass="64547" checksum="156E60BC8D3778DC" modified="2017-03-15" version="1">MIRTPLRPLARVLEARDNGDDPALIEAENKRLRHEAMRDKARLRAEGRLLVLGAMFFCAFMTIGIRMGALASSEPEEPRAAVAGNPIIGQRSDIVDRNGRILATNLETHSLYAHPQDMVDPEFAAAELAHIFPELDEEKLLANFTGDRKFLWIRKQISPEQLQAVHDIGSPGLLFGPREMRLYPNGPIAAHILGGASYGREGVASAEVIGVAGVERFFDAYLRDPANEGAPLELSIDLTVQAASEQVLAGGMSIMNAKGATSVLMNIDTGEIISMVSLPDFDPNNRPPVLTTGDQSDSPLFNRAVQGVYELGSVFKIFTIAQAMDLNLVNPETLIDTTGPLTWGRFKIRDFRNYGPELTTTDIIVKSSNVGTARIANMIGADRQREFLNSLGFLEPTTVEMVEAPTGKPLLPRNWSEISTMTISYGHGLSSSPLHLAAGYASLLNGGTRVQPTLLRQDTVQTGDRVVREAVSTRSRDMLRQVVERGTASFGEVAGYKVGGKTGTADKPRERGGGYYDDKVIATFASVFPADDPQYVLIVTLDEPVESSGDEPRRTAGWTAVPVAAEMIRRVAPLLGMRPEVETLEPIGVTLTSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LBY9</accession>
    <name>A0A1M5LBY9_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 7">ATP-dependent Clp protease proteolytic subunit</fullName>
            <ecNumber evidence="5">3.4.21.92</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Endopeptidase Clp</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">clpP</name>
        <name evidence="8" type="ORF">SAMN05444003_0211</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Fourteen ClpP subunits assemble into 2 heptameric rings which stack back to back to give a disk-like structure with a central cavity, resembling the structure of eukaryotic proteasomes.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 7">Belongs to the peptidase S14 family.</text>
    </comment>
    <dbReference type="EC" id="3.4.21.92" evidence="5"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG62527.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900343.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0211"/>
    <dbReference type="EnsemblBacteria" id="SHG62527">
        <property type="protein sequence ID" value="SHG62527"/>
        <property type="gene ID" value="SAMN05444003_0211"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004176">
        <property type="term" value="F:ATP-dependent peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07017">
        <property type="entry name" value="S14_ClpP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00444">
        <property type="entry name" value="ClpP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001907">
        <property type="entry name" value="ClpP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023562">
        <property type="entry name" value="ClpP/TepA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033135">
        <property type="entry name" value="ClpP_His_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10381">
        <property type="entry name" value="PTHR10381"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00574">
        <property type="entry name" value="CLP_protease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00127">
        <property type="entry name" value="CLPPROTEASEP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00382">
        <property type="entry name" value="CLP_PROTEASE_HIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 5 8" id="KW-0645">Protease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0720">Serine protease</keyword>
    <feature type="active site" description="Nucleophile" evidence="5">
        <location>
            <position position="106"/>
        </location>
    </feature>
    <feature type="active site" evidence="5 6">
        <location>
            <position position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00444"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10086"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003567"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG62527.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="206" mass="23161" checksum="0E9C178EB2A19E30" modified="2017-03-15" version="1">MQDPVETYMNLVPMVVEQTARGERAYDIFSRLLKERIVFVNGPIHDGMSQLIVAQLLHLEAENPKKEISMYINSPGGAVHSGMSIYDTMQYIRPKVSTLICGMAASMGSVIAVGGEKGLRFALPNSEVMVHQPSGGAQGMASDILIRANHIEQTRERMYKLYMKHTGQTKKEVEKALDRDKWMTPEEAKEWGHIDEIVENRPKSDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LFD5</accession>
    <name>A0A1M5LFD5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">TRAP transporter, DctM subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0262</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63757.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898690.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0262"/>
    <dbReference type="EnsemblBacteria" id="SHG63757">
        <property type="protein sequence ID" value="SHG63757"/>
        <property type="gene ID" value="SAMN05444003_0262"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010656">
        <property type="entry name" value="DctM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004681">
        <property type="entry name" value="TRAP_DctM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33362">
        <property type="entry name" value="PTHR33362"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06808">
        <property type="entry name" value="DctM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="6"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="54"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="94"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="135"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="168"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="222"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="248"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="281"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="306"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="336"/>
            <end position="357"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="377"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="430"/>
            <end position="449"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="461"/>
            <end position="482"/>
        </location>
    </feature>
    <feature type="domain" description="DctM" evidence="4">
        <location>
            <begin position="8"/>
            <end position="481"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF06808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG63757.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="511" mass="54494" checksum="31C030F9804671B6" modified="2017-03-15" version="1">MLIWFLPVFLVLIMIGLPVVFALLAAPGALLIFDGQERQLSVLYRNLYNGMDSFPLMALPFFMLAGEIMNRGGITTRLVEFSQAFMGHLRGGLAHVNILSSILFAGLSGSAVADTSALGSTLIPAMEKNGYTRKFAAAITAASSVIGPIIPPSGIMIIYAYVMGESVAALFLAGIVPGVMVGVGLMIMVRLMADRYDLPKAERIVTKDQTITPLESVVSWGLIRINIAGLLYAFSGLVTMFLPTEPSNWLVFLILLPIAHVIVQYIKSQVSNDFRIVCKKAVAPLQTPIIILGGILIGVFTPTEASAIAVAYALIVSFFVLRSMNGRDLIEVLSKSALSTSAVLLLVGAAVAFKTVVSLSYAPQILTEAILGLSENPLVLLFLINILLFIVGMFLDAGPAIIILGPILGPIFVELGVHPVHFAIIMSVNLTVGLATPPMGLVLFVASTVSREKVETIAKAILPFLAVEIFVIFLITYVPAISMTVPYLTGFLGCGPEVGFSECISPTPIPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LH57</accession>
    <name>A0A1M5LH57_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_0287</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64381.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898718.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0287"/>
    <dbReference type="EnsemblBacteria" id="SHG64381">
        <property type="protein sequence ID" value="SHG64381"/>
        <property type="gene ID" value="SAMN05444003_0287"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="2"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="34"/>
            <end position="41"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG64381.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="237" mass="25223" checksum="78F3F15EF8CC6BE3" modified="2017-03-15" version="1">MIHLSNVHKSFGSAAVLQGVTLDIEQGQSLVLIGASGSGKSVLLKCILGLETPDSGTITVDGKPANPPQFLDRFGMLFQGAALFDSLPVWENVAFRALQTGQERPMAKKRAIEKLDRVGLSAKVADQFPSDLSGGMRKRAGLARAIFSDPDIIFFDEPTTGLDPIRANTINTLIRGVVDEIGATTLTITHDLTSVDAIADKVAMLKDGKIIWQGVPDELRASSNPDVDAFVTGRAAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LIE1</accession>
    <name>A0A1M5LIE1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0290</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64449.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898722.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG64449">
        <property type="protein sequence ID" value="SHG64449"/>
        <property type="gene ID" value="SAMN05444003_0290"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG64449.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="102" mass="11380" checksum="F4BAABDFD9B50E69" modified="2017-03-15" version="1">MANDEPKTICRTPAEGKPGTTRIPTWKFDLLRGHILNVVREAGSDGLPFRDLSSLVAKRLTEEETTRLGSIGWHTTTVKLEMEVARDIKRLEGVSPQRLVLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LIF9</accession>
    <name>A0A1M5LIF9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0309</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG64827.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898753.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0309"/>
    <dbReference type="EnsemblBacteria" id="SHG64827">
        <property type="protein sequence ID" value="SHG64827"/>
        <property type="gene ID" value="SAMN05444003_0309"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021270">
        <property type="entry name" value="DUF2849"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11011">
        <property type="entry name" value="DUF2849"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="67"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="75"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG64827.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="99" mass="11053" checksum="0905F0FB688285E2" modified="2017-03-15" version="1">MPRAFTPKVITANALLEGDAIWFTENNEWSRDIADAELITDETHADLRLIEAQAFADQIAGAYLADAKQTENGPAPTHFREEFRTRGPSNYHHGKQAEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LLI7</accession>
    <name>A0A1M5LLI7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MoxR-like ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0366</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG65994.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900365.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0366"/>
    <dbReference type="EnsemblBacteria" id="SHG65994">
        <property type="protein sequence ID" value="SHG65994"/>
        <property type="gene ID" value="SAMN05444003_0366"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011704">
        <property type="entry name" value="ATPase_dyneun-rel_AAA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001270">
        <property type="entry name" value="ClpA/B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07728">
        <property type="entry name" value="AAA_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00300">
        <property type="entry name" value="CLPPROTEASEA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="1">
        <location>
            <begin position="25"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG65994.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="279" mass="31828" checksum="35B4C9F7E562953F" modified="2017-03-15" version="1">MRFQGTDNYVATDDLKIAVNAAVTLERPLLVKGEPGTGKTELARQVSAALGLPMIEWHIKSTTKAQQGLYEYDAVSRLRDSQLGDERVHDVKNYIKKGKLWQAFEAEEKVVLLIDEIDKADIEFPNDLLQELDRMEFHVYETGETIKADNRPIVIITSNNEKELPDAFLRRCFFHYIQFPDAETMKKIVEVHHPGIKEALLTTALTQFYEIRDTAGLKKKPSTSEVLDWLKLLLAEDLDAEDLKRDGANALPKLHGALLKNEQDVHLFERLAFMARGQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LPE8</accession>
    <name>A0A1M5LPE8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0409</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG66974.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0409"/>
    <dbReference type="EnsemblBacteria" id="SHG66974">
        <property type="protein sequence ID" value="SHG66974"/>
        <property type="gene ID" value="SAMN05444003_0409"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG66974.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="85" mass="9271" checksum="A911D2D9E5EBF9FC" modified="2017-03-15" version="1">MLVNTTNTFGIILGTENYDACLSFYRDTLGLSVWFDKGHLCCLRFGDGYLMIETGGVASLCLKTNAQNPTVLRFNVEDVAAAANN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LRK0</accession>
    <name>A0A1M5LRK0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">3-hydroxyisobutyrate dehydrogenase</fullName>
            <shortName evidence="5">HIBADH</shortName>
            <ecNumber evidence="5">1.1.1.31</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">SAMN05444003_0443</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8 9">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>3-hydroxy-2-methylpropanoate + NAD(+) = 2-methyl-3-oxopropanoate + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:17681"/>
            <dbReference type="ChEBI" id="CHEBI:11805"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57700"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.1.1.31"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="5">Amino-acid degradation; L-valine degradation.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the HIBADH-related family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.31" evidence="5"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67754.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898944.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0443"/>
    <dbReference type="EnsemblBacteria" id="SHG67754">
        <property type="protein sequence ID" value="SHG67754"/>
        <property type="gene ID" value="SAMN05444003_0443"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00362"/>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008442">
        <property type="term" value="F:3-hydroxyisobutyrate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006574">
        <property type="term" value="P:valine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002204">
        <property type="entry name" value="3-OH-isobutyrate_DH-rel_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006115">
        <property type="entry name" value="6PGDH_NADP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011548">
        <property type="entry name" value="HIBADH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015815">
        <property type="entry name" value="HIBADH-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029154">
        <property type="entry name" value="NADP-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14833">
        <property type="entry name" value="NAD_binding_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03446">
        <property type="entry name" value="NAD_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000103">
        <property type="entry name" value="HIBADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01692">
        <property type="entry name" value="HIBADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00895">
        <property type="entry name" value="3_HYDROXYISOBUT_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0101">Branched-chain amino acid catabolism</keyword>
    <keyword evidence="5" id="KW-0520">NAD</keyword>
    <keyword evidence="3 5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD_binding_2" evidence="6">
        <location>
            <begin position="2"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="domain" description="NAD_binding_11" evidence="7">
        <location>
            <begin position="155"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="active site" evidence="4">
        <location>
            <position position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000103-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU910714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF03446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF14833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="SHG67754.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="289" mass="29588" checksum="8D49CF6F40235491" modified="2017-03-15" version="1">MKIGFIGLGNMGAPMAANLQAAGHEVVGFDTVASPDGLDMAATSAAAAEGADVVITMLPNGDILRAVASEIHPAMKAGAVHLDCSTVDVQSARDVAQAAQNADLSAVDAPVSGGIGGAQAGTLTFMAGGPTDAFETVRPLFDIMGQKAVHCGDAGNGQAAKICNNMILGITMIGTCEAFNLADKLGLDRQAMFDVVSTSSGYSWTMNTYCPAPGVGPQSPADNGYKPGFAAELMLKDLNLSQMAAEAVDADTPMGQAATDLYAQFVEDEDGMGQDFSAMLPRFEKRGRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LT83</accession>
    <name>A0A1M5LT83_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">VPLPA-CTERM protein sorting domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0447</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67839.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898951.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG67839">
        <property type="protein sequence ID" value="SHG67839"/>
        <property type="gene ID" value="SAMN05444003_0447"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013424">
        <property type="entry name" value="PEP_exosort_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022472">
        <property type="entry name" value="VPLPA-CTERM"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02595">
        <property type="entry name" value="PEP_exosort"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03370">
        <property type="entry name" value="VPLPA-CTERM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG67839.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="115" mass="12525" checksum="B04627158F1D2C40" modified="2017-03-15" version="1">MALFDFGESVFLEEIRFSFATDGQDQFDFRVYEPTIGFFFDDVDPVNNVYTLNTPRRGSVFGIGATRGADFKILSLTVDATLRTGEPPAVPLPASSLLLLAGLGGLGVMRKKKSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LVM3</accession>
    <name>A0A1M5LVM3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Phosphoribosylformylglycinamidine synthase subunit PurS</fullName>
            <shortName evidence="5">FGAM synthase</shortName>
            <ecNumber evidence="5">6.3.5.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Formylglycinamide ribonucleotide amidotransferase subunit III</fullName>
            <shortName evidence="5">FGAR amidotransferase III</shortName>
            <shortName evidence="5">FGAR-AT III</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">Phosphoribosylformylglycinamidine synthase subunit III</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">purS</name>
        <name evidence="6" type="ORF">SAMN05444003_0496</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>ATP + H2O + L-glutamine + N(2)-formyl-N(1)-(5-phospho-beta-D-ribosyl)glycinamide = 2-formamido-N(1)-(5-O-phospho-beta-D-ribosyl)acetamidine + ADP + H(+) + L-glutamate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:17129"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:147286"/>
            <dbReference type="ChEBI" id="CHEBI:147287"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.5.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="5">Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole from N(2)-formyl-N(1)-(5-phospho-D-ribosyl)glycinamide: step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Part of the FGAM synthase complex composed of 1 PurL, 1 PurQ and 2 PurS subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the PurS family.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.3" evidence="5"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899020.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0496"/>
    <dbReference type="EnsemblBacteria" id="SHG68960">
        <property type="protein sequence ID" value="SHG68960"/>
        <property type="gene ID" value="SAMN05444003_0496"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00128"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004642">
        <property type="term" value="F:phosphoribosylformylglycinamidine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01926">
        <property type="entry name" value="PurS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003850">
        <property type="entry name" value="PurS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036604">
        <property type="entry name" value="PurS-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34696">
        <property type="entry name" value="PTHR34696"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02700">
        <property type="entry name" value="PurS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82697">
        <property type="entry name" value="SSF82697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00302">
        <property type="entry name" value="TIGR00302"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 5" id="KW-0436">Ligase</keyword>
    <keyword evidence="2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3 5" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG68960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="76" mass="8238" checksum="3220C09717C7366B" modified="2017-03-15" version="1">MKAKVHVMLKNGVLDPQGEAVKHALGSLGFEGVEGVRQGKVIELDLADGTSEETINEMCEKLLANTVIESYRVELV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LW10</accession>
    <name>A0A1M5LW10_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ca-activated chloride channel family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0512</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69312.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899037.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG69312">
        <property type="protein sequence ID" value="SHG69312"/>
        <property type="gene ID" value="SAMN05444003_0512"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010607">
        <property type="entry name" value="DUF1194"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06707">
        <property type="entry name" value="DUF1194"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012047782" evidence="1">
        <location>
            <begin position="21"/>
            <end position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG69312.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="217" mass="23906" checksum="3210253DCE6F2A6B" modified="2017-03-15" version="1">MLKRFIAATFLTLTSVPALACDTALILTIDVSNSVDPAEWALQKDGLVDALRDPEVVGAMVDNYAALMVIQWSGEDKQEISIPWTRVENELDAALFANLAADMERAFVLSDTAPAEAIYFSLEQFEDVPDCLRKVIDISGDGTPNSGRDTATARIIAERSGVTINGIAIESMGVAITNFYERKVITRNGFVLTARRHLDYPRAIRQKIIRELSRMLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LZ65</accession>
    <name>A0A1M5LZ65_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">TfoX C-terminal domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0542</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG69969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899083.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0542"/>
    <dbReference type="EnsemblBacteria" id="SHG69969">
        <property type="protein sequence ID" value="SHG69969"/>
        <property type="gene ID" value="SAMN05444003_0542"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007077">
        <property type="entry name" value="TfoX_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04994">
        <property type="entry name" value="TfoX_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TfoX_C" evidence="1">
        <location>
            <begin position="3"/>
            <end position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG69969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="109" mass="12146" checksum="695EF4996EA1280F" modified="2017-03-15" version="1">MAALTTIRNIGPAFEESLIAVGIKTAEELRDLGADAAYARLLENGTKPHFIGYYVLHMALQGRPWNDCKGNEKKALRKKFDALKASHFDQDQSDLERMLNEIGVIKASK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LZT1</accession>
    <name>A0A1M5LZT1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">3-oxoacyl-[acyl-carrier-protein] synthase II</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_0564</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70440.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899113.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0564"/>
    <dbReference type="EnsemblBacteria" id="SHG70440">
        <property type="protein sequence ID" value="SHG70440"/>
        <property type="gene ID" value="SAMN05444003_0564"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004315">
        <property type="term" value="F:3-oxoacyl-[acyl-carrier-protein] synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00834">
        <property type="entry name" value="KAS_I_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000794">
        <property type="entry name" value="Beta-ketoacyl_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018201">
        <property type="entry name" value="Ketoacyl_synth_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014031">
        <property type="entry name" value="Ketoacyl_synth_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014030">
        <property type="entry name" value="Ketoacyl_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020841">
        <property type="entry name" value="PKS_Beta-ketoAc_synthase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11712">
        <property type="entry name" value="PTHR11712"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00109">
        <property type="entry name" value="ketoacyl-synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02801">
        <property type="entry name" value="Ketoacyl-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00825">
        <property type="entry name" value="PKS_KS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00606">
        <property type="entry name" value="B_KETOACYL_SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PKS_KS" evidence="3">
        <location>
            <begin position="4"/>
            <end position="402"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG70440.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="402" mass="42536" checksum="4AE05372EB73A29D" modified="2017-03-15" version="1">MKRVVITGAGTINPLGHDAASTFEAMKEGRSGIGALDIRDVDRLQIQIGGQVSGYDENAYFNRQQIALYDRFTQFTLLSARQAIEQAGLKFTGKLADRSGVVLGTSGGGLNTQDENYRVVYEEGKNRVHPFIVPKLMNNAAASHVSMEWNLRGPSFTVATACASSNHAMGQAFNMVRSGMAKVMVTGGSESMLCFGGIKAWEGLRVMSKDGCRPFSATRNGMVQGEGAGIFVFEEYEHAKARGADILCEVAGFAMSSDAADIVMPSKQGAARAIHGALKDGKIAKSKVGYINAHGTGTAANDKTECAAVADVFGAHADQLMISSTKSMHGHLIGGTGAVELFACIMALRKSVIAPTINYEEADPECALDVVPNEARDAEVDVVLSNAFAFGGLNAVLALRKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M1D4</accession>
    <name>A0A1M5M1D4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Peptide/nickel transport system substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0577</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial solute-binding protein 5 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70709.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899128.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0577"/>
    <dbReference type="EnsemblBacteria" id="SHG70709">
        <property type="protein sequence ID" value="SHG70709"/>
        <property type="gene ID" value="SAMN05444003_0577"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030288">
        <property type="term" value="C:outer membrane-bounded periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030678">
        <property type="entry name" value="Peptide/Ni-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039424">
        <property type="entry name" value="SBP_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000914">
        <property type="entry name" value="SBP_5_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30290">
        <property type="entry name" value="PTHR30290"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00496">
        <property type="entry name" value="SBP_bac_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002741">
        <property type="entry name" value="MppA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SBP_bac_5" evidence="2">
        <location>
            <begin position="106"/>
            <end position="462"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG70709.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="553" mass="60797" checksum="71F786A5C9BA7514" modified="2017-03-15" version="1">MTPETQSRIHPAALTYAEDEKTGKLSRREFLARTTALGLTSAAAYGLIGLDAPAHAGGHAQQGGTMRMQMEVRALKDIRATDWTQMAFVYAGWLEYLVEYNSDGSFNPMLLESWDVNDDATVYTLKLRQGVKWNNGDDFTADDVARVITDWCDKSAEGNSMAGRFAVLIDPATEKAIDGAIQVVDTHTVQLNLPASDITLIAGMADYPAAIYHSGFDGENPLNDQVGTGPYLSESHEVGVKSVLVRNEGHDWWGYAAGKGGFLDRIEYIDYGTDPSAWVAAAAADEIDMIYETVGDFVEVFNGIGWEESAVASAATIVIRPNQVAEVNGMQPYANKKVRQAIAMACNNAVCLELGYANQGEVARNQHVGPMHPAWADVPALPYDPAKALEMITEEGMADFEFEITSIDDDWRRNTTDAVAAQLRDAGFNVKRTIIPGSTFWNDWTKYPFSSTNWNHRPLDTQILGLAYRSGEAWNEAAFANAEFDALLAEANSIADADARREVMAKLQGIMTDEGVTLQPYWRTVYRHAKPGFTGWDMHIAYLPQIYKIGVAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M8I3</accession>
    <name>A0A1M5M8I3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 10">Arginase</fullName>
            <ecNumber evidence="3 10">3.5.3.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_0682</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>H2O + L-arginine = L-ornithine + urea</text>
            <dbReference type="Rhea" id="RHEA:20569"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16199"/>
            <dbReference type="ChEBI" id="CHEBI:32682"/>
            <dbReference type="ChEBI" id="CHEBI:46911"/>
            <dbReference type="EC" id="3.5.3.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="10">Binds 2 manganese ions per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Nitrogen metabolism; urea cycle; L-ornithine and urea from L-arginine: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8 9">Belongs to the arginase family.</text>
    </comment>
    <dbReference type="EC" id="3.5.3.1" evidence="3 10"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73289.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899287.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0682"/>
    <dbReference type="EnsemblBacteria" id="SHG73289">
        <property type="protein sequence ID" value="SHG73289"/>
        <property type="gene ID" value="SAMN05444003_0682"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00158">
        <property type="reaction ID" value="UER00270"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004053">
        <property type="term" value="F:arginase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006525">
        <property type="term" value="P:arginine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000050">
        <property type="term" value="P:urea cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd09989">
        <property type="entry name" value="Arginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014033">
        <property type="entry name" value="Arginase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006035">
        <property type="entry name" value="Ureohydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023696">
        <property type="entry name" value="Ureohydrolase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020855">
        <property type="entry name" value="Ureohydrolase_Mn_BS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43782">
        <property type="entry name" value="PTHR43782"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00491">
        <property type="entry name" value="Arginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036979">
        <property type="entry name" value="Arginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00116">
        <property type="entry name" value="ARGINASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52768">
        <property type="entry name" value="SSF52768"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01229">
        <property type="entry name" value="rocF_arginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01053">
        <property type="entry name" value="ARGINASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51409">
        <property type="entry name" value="ARGINASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 10" id="KW-0056">Arginine metabolism</keyword>
    <keyword evidence="7 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="10" id="KW-0464">Manganese</keyword>
    <keyword evidence="6 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012168"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00018123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022503"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00742"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003684"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU361159"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG73289.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="308" mass="32828" checksum="77B24EF45426AB8E" modified="2017-03-15" version="1">MTQKNCILVGVPLDCGKARNGCLMGPDAYRTAGLAEALEALGHSTQDIGNVAPDPVRTANAGHLHKLAENIGWTSALQRTALDVAQTGFPIFMGGDHALAAGTVSGMAAHWAKQDRPFFVLWLDAHTDIHTPKSTASGNLHGTPVGYYIGRDGFDGFPDLPDAVDPKNICMIGIRSVDPAENAVLQNLDIDVVDMRRIDETGIATPLAAFLDRVKAANGVLHVSLDVDFIDPLHAPAVGTTVPGGATEREAHLVMEMLSDSGLVQSLDLVELNPFLDDRGKTASLMVDLTASLMGRRVFDRPTRDYSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M8K3</accession>
    <name>A0A1M5M8K3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ornithine cyclodeaminase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0683</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73309.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899289.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0683"/>
    <dbReference type="EnsemblBacteria" id="SHG73309">
        <property type="protein sequence ID" value="SHG73309"/>
        <property type="gene ID" value="SAMN05444003_0683"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1780.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003462">
        <property type="entry name" value="ODC_Mu_crystall"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023401">
        <property type="entry name" value="ODC_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13812">
        <property type="entry name" value="PTHR13812"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02423">
        <property type="entry name" value="OCD_Mu_crystall"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG73309.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="348" mass="38077" checksum="551790A8B84C297F" modified="2017-03-15" version="1">MTLEPSKLAMVPFVSVENMMKFVHHIGIERVLCDLAHEIEADFKRWELFDKTPRVGSHSDVGVIELMPTSDGEMYGFKYVNGHPKNAGEGLQTVTAFGLLADVYSGYPVMLSEMTVLTALRTAAMSAVATKALAPKGAKIMAMIGNGAQSEFQCLAIKAYCGIETVRLYDIDPAATVKCAANLTTTGLRVEPCSSIEEVVEGAQIITTATADKDMQQILTDNHVGAGVHINAIGGDCPGKTELHRDIVSRSTVFVEYPPQTRIEGEIQQMDPDHPVTELWEVLAGKTNGRTSLNEVTLFDGVGFAIEDFSALRYVHSWIKDTPYFDDLDMIADPDDPRDLFGMLQRAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M9C9</accession>
    <name>A0A1M5M9C9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0685</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73353.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899293.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG73353">
        <property type="protein sequence ID" value="SHG73353"/>
        <property type="gene ID" value="SAMN05444003_0685"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5011979636" evidence="1">
        <location>
            <begin position="22"/>
            <end position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG73353.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="240" mass="26027" checksum="BF1556510591C014" modified="2017-03-15" version="1">MFYKTAVCAAAISAFSTVSYAQQFGGELGLSYAYPSEGGDLSITEYFGAAEYNFYQRFAIGADLTGYSIEDTDLTFASSTLHFIYHLNNFSSVGVFTGRDVIGDSDTDETRSSNINGIEAGAAYEQFEVEGYVAMVSGGDEEPMMFGVDGLYHINDQFSAFVEFDVANGDDFDASRLAIGGTYEIRNGPELYAQVGQRSAEAAGAEDESNFIELGAKIQFGTNRGTTFDGRSFFELIPNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MAF5</accession>
    <name>A0A1M5MAF5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0726</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74260.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899371.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG74260">
        <property type="protein sequence ID" value="SHG74260"/>
        <property type="gene ID" value="SAMN05444003_0726"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021938">
        <property type="entry name" value="DUF3553"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12073">
        <property type="entry name" value="DUF3553"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG74260.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="60" mass="6460" checksum="8B5F840AADF0ED19" modified="2017-03-15" version="1">MNELNSILTPGSLVRHPAQPDWGLGQVQSNIAGRITVNFQDAGKVVIDGHRVVLELVDLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MB38</accession>
    <name>A0A1M5MB38_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">50S ribosomal protein L27</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpmA</name>
        <name evidence="7" type="ORF">SAMN05444003_0733</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the bacterial ribosomal protein bL27 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG74441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899382.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0733"/>
    <dbReference type="EnsemblBacteria" id="SHG74441">
        <property type="protein sequence ID" value="SHG74441"/>
        <property type="gene ID" value="SAMN05444003_0733"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00539">
        <property type="entry name" value="Ribosomal_L27"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001684">
        <property type="entry name" value="Ribosomal_L27"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018261">
        <property type="entry name" value="Ribosomal_L27_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15893">
        <property type="entry name" value="PTHR15893"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01016">
        <property type="entry name" value="Ribosomal_L27"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00063">
        <property type="entry name" value="RIBOSOMALL27"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00062">
        <property type="entry name" value="L27"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00831">
        <property type="entry name" value="RIBOSOMAL_L27"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 5 7" id="KW-0689">Ribosomal protein</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010797"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00029549"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00539"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG74441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="89" mass="9417" checksum="55A907494BBBCDC2" modified="2017-03-15" version="1">MAHKKAGGSSRNGRDSAGRRLGVKKFGGEVVIPGNIIIRQRGTKMWPGAGVGMGKDHTIFATAEGQVKFHKGLKGRTFISVLPMAEAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MD03</accession>
    <name>A0A1M5MD03_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glyoxylase, beta-lactamase superfamily II</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0764</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG75135.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899424.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0764"/>
    <dbReference type="EnsemblBacteria" id="SHG75135">
        <property type="protein sequence ID" value="SHG75135"/>
        <property type="gene ID" value="SAMN05444003_0764"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041516">
        <property type="entry name" value="LACTB2_WH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17778">
        <property type="entry name" value="BLACT_WH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lactamase_B" evidence="1">
        <location>
            <begin position="35"/>
            <end position="214"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG75135.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="302" mass="32616" checksum="E3C705FE7B7744F1" modified="2017-03-15" version="1">MEQESFDPPIGVGEEIAPGLRRIVAPNPSPMTFRGTNTYILGTANLAIIDPGPDSPDHLDAILSTIGDAKVQLIFVTHSHLDHSPLASKLADQTHAPVLAFGDSSSGRSEIMTSLAAAGFVGGGEGVDLWFVPDREVVDGEMFFSAEWVLKVIHSPGHMGNHISLRWNDAIFTGDLVMGWASSLVSPPDGDLSDFMDSCERLLSEKPKSLFPGHGAPVSAAMERIEWLLEHRRGRTNDILAALADGNKTVEQLTAEIYSDTPAALHPAAARNLFAHLIDLSKRGEVFAQPTLRPDALFRRTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MFV0</accession>
    <name>A0A1M5MFV0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized metal-binding protein YceD, DUF177 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0809</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76126.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899486.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0809"/>
    <dbReference type="EnsemblBacteria" id="SHG76126">
        <property type="protein sequence ID" value="SHG76126"/>
        <property type="gene ID" value="SAMN05444003_0809"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003772">
        <property type="entry name" value="YceD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02620">
        <property type="entry name" value="YceD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG76126.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="186" mass="20294" checksum="A0A1E3972545FA0A" modified="2017-03-15" version="1">MERLVPERLSHLLRVADLPTKKPTAFLLEFDAKQRAGIADELGISGIKKLRFSGQVQAVGGRDWELSGELGATVVQPCVVTLDPVTTRLDENVRRLYVAELPELEGTEIEMPEDDSVDELPSEIEVMDVLIEALSLALPQFPRKEDAELGEAIFAEPGVSAITDDEAKPFAGLGALKDALEKKTDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MHV0</accession>
    <name>A0A1M5MHV0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Glycerol kinase</fullName>
            <ecNumber evidence="5">2.7.1.30</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">ATP:glycerol 3-phosphotransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">Glycerokinase</fullName>
            <shortName evidence="5">GK</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">glpK</name>
        <name evidence="9" type="ORF">SAMN05444003_0836</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn-glycerol 3-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>ATP + glycerol = ADP + H(+) + sn-glycerol 3-phosphate</text>
            <dbReference type="Rhea" id="RHEA:21644"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17754"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57597"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.30"/>
        </reaction>
    </comment>
    <comment type="activity regulation">
        <text evidence="5">Inhibited by fructose 1,6-bisphosphate (FBP).</text>
    </comment>
    <comment type="pathway">
        <text evidence="5">Polyol metabolism; glycerol degradation via glycerol kinase pathway; sn-glycerol 3-phosphate from glycerol: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the FGGY kinase family.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.30" evidence="5"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG76791.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900406.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0836"/>
    <dbReference type="EnsemblBacteria" id="SHG76791">
        <property type="protein sequence ID" value="SHG76791"/>
        <property type="gene ID" value="SAMN05444003_0836"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00618">
        <property type="reaction ID" value="UER00672"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004370">
        <property type="term" value="F:glycerol kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019563">
        <property type="term" value="P:glycerol catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006072">
        <property type="term" value="P:glycerol-3-phosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00186">
        <property type="entry name" value="Glycerol_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000577">
        <property type="entry name" value="Carb_kinase_FGGY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018485">
        <property type="entry name" value="Carb_kinase_FGGY_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018483">
        <property type="entry name" value="Carb_kinase_FGGY_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018484">
        <property type="entry name" value="Carb_kinase_FGGY_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005999">
        <property type="entry name" value="Glycerol_kin"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02782">
        <property type="entry name" value="FGGY_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00370">
        <property type="entry name" value="FGGY_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000538">
        <property type="entry name" value="GlpK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01311">
        <property type="entry name" value="glycerol_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00933">
        <property type="entry name" value="FGGY_KINASES_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00445">
        <property type="entry name" value="FGGY_KINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 5" id="KW-0319">Glycerol metabolism</keyword>
    <keyword evidence="5 6 9" id="KW-0418">Kinase</keyword>
    <keyword evidence="2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="FGGY_N" evidence="7">
        <location>
            <begin position="3"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="domain" description="FGGY_C" evidence="8">
        <location>
            <begin position="259"/>
            <end position="448"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="81"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="242"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="11"/>
            <end position="13"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="11"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="15"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="133"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="264"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="307"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="311"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="326"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="410"/>
            <end position="414"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022798"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHG76791.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="494" mass="53511" checksum="41C4BFA450F5A087" modified="2017-03-15" version="1">MTYILAIDQGTTSSRGIIFDKDMKIASIAQQEFKQHFPKSGWVEHVADDLWTTTVATAKGAIEKAGISASNVAGIGITNQRETTIVWDKRTGEAIHKAIVWQDRRTADMCEDLKSDNFEAELTEKTGLLLDPYFSGTKVKWLLDNVDGARADAEAGHLLFGTVDCFLIWKLTGGTRHVTDATNAARTMLYNIRENQWDADICSKFGIPMNMLPEVLDCAADFGISHGDILGAELPILGVAGDQQAATLGQACFEPGMLKSTYGTGCFALLNTGGTLVSSQNRLLGTIAYRLDGKTTYALEGSIFIAGAVVQWLRDGLGIIAKAADTHPLAEKADPEQELYLVPAFTGIGAPHWDANARGAIYGLTRGSGPNEFARAALESVGFQTRELLEAMQADWDGASGDAVLRVDGGMSASDWTMQFLSDIIDAPVDRPEVLETTALGVAWLAGMRAGVYPDQAGFAANWALDERFEPAMSEETRKRRFAGWKDAIRRTLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MI39</accession>
    <name>A0A1M5MI39_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Virulence factor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0844</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77000.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899543.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0844"/>
    <dbReference type="EnsemblBacteria" id="SHG77000">
        <property type="protein sequence ID" value="SHG77000"/>
        <property type="gene ID" value="SAMN05444003_0844"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025989">
        <property type="entry name" value="Virulence_F_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13769">
        <property type="entry name" value="Virulence_fact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Virulence_fact" evidence="1">
        <location>
            <begin position="7"/>
            <end position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG77000.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="98" mass="10773" checksum="9A71791761DA0622" modified="2017-03-15" version="1">MADVTIVYWRDMPAQVIVGKGRRGTKMPLPERFEQAIDRAAMKSGAAESDAYLEGFRKADPFPVEGADAEVAAAQVARIEEEYDTEKLKALIANDGWA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MJ10</accession>
    <name>A0A1M5MJ10_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Helix-turn-helix</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0848</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899548.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG77102">
        <property type="protein sequence ID" value="SHG77102"/>
        <property type="gene ID" value="SAMN05444003_0848"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041413">
        <property type="entry name" value="MLTR_LBD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17765">
        <property type="entry name" value="MLTR_LBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="8"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG77102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="250" mass="28058" checksum="E06E4F47C5D43D18" modified="2017-03-15" version="1">MQNFPDILRHWRKQRRYSQLDLALEANISSRHLSFLETGRSKPSREMVQQLSDALSVPLDARNRMLTSAGYAPKYPKREWDDAEMLPIRKAIDWTLNQHAPYPGLALDRLWVIRRMNEPAKRMFGTFGVTEGSSMLDLIQDPTLQDLIENWPEVAHHSALRLRSESAAQGGIPELDAAADILSSDATPSEPNLPAIPTVFKLGEQTLSLFGTIAQFGTTADEAIEDLKIELFFPADDAAEDLLKQLAVVH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MLA0</accession>
    <name>A0A1M5MLA0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7 10">Phosphoglycerate kinase</fullName>
            <ecNumber evidence="2 7 10">2.7.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">pgk</name>
        <name evidence="11" type="ORF">SAMN05444003_0888</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 7 10">
            <text>(2R)-3-phosphoglycerate + ATP = (2R)-3-phospho-glyceroyl phosphate + ADP</text>
            <dbReference type="Rhea" id="RHEA:14801"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57604"/>
            <dbReference type="ChEBI" id="CHEBI:58272"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.2.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 2/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7 10">Belongs to the phosphoglycerate kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.7.2.3" evidence="2 7 10"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG78015.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899601.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0888"/>
    <dbReference type="EnsemblBacteria" id="SHG78015">
        <property type="protein sequence ID" value="SHG78015"/>
        <property type="gene ID" value="SAMN05444003_0888"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00185"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004618">
        <property type="term" value="F:phosphoglycerate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1260">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00145">
        <property type="entry name" value="Phosphoglyc_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001576">
        <property type="entry name" value="Phosphoglycerate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015911">
        <property type="entry name" value="Phosphoglycerate_kinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015824">
        <property type="entry name" value="Phosphoglycerate_kinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036043">
        <property type="entry name" value="Phosphoglycerate_kinase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11406">
        <property type="entry name" value="PTHR11406"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00162">
        <property type="entry name" value="PGK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000724">
        <property type="entry name" value="Pgk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00477">
        <property type="entry name" value="PHGLYCKINASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53748">
        <property type="entry name" value="SSF53748"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00111">
        <property type="entry name" value="PGLYCERATE_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="5 7 10" id="KW-0418">Kinase</keyword>
    <keyword evidence="4 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7 10" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="7 8">
        <location>
            <begin position="21"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7 8">
        <location>
            <begin position="59"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7 8">
        <location>
            <position position="36"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 8">
        <location>
            <position position="114"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 8">
        <location>
            <position position="147"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 9">
        <location>
            <position position="197"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 9">
        <location>
            <position position="319"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 9">
        <location>
            <begin position="349"/>
            <end position="352"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000724-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000724-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU000532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG78015.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="392" mass="40895" checksum="30F837B90CDCD8E3" modified="2017-03-15" version="1">MAWKTLDEMDLAGKRVLVRVDINVPMENGEVTDATRIERIAQTVYDIQDAGGTVILMAHFGRPKGKVVPEMSLEHVAPTVADVLGLPVTWANSDYRDAVKEIEGNEVLLLENLRFNPGEEANDPEFAKRLASLCDVYVNDAFSAAHRAHASTEAIAKLRPACAGRLMAAELSALEAALGTPERPVVAVVGGAKVSTKLDLLGNLVGKVDHLVIGGGMANTFLAAQGIDVGKSLCEHDLADTARDILSKADVAGCEIILPRDIVVAREFAANAANETVAPDACPSDAMILDAGPETVAYIGSVLENAKTLVWNGPLGAFEIEPFDAATNAAAKKAASLSKAGKLISVAGGGDTVAALNQAGAADDFTYISTAGGAFLEWMEGKILPGVAALSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MSJ1</accession>
    <name>A0A1M5MSJ1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0999</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG80334.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0999"/>
    <dbReference type="EnsemblBacteria" id="SHG80334">
        <property type="protein sequence ID" value="SHG80334"/>
        <property type="gene ID" value="SAMN05444003_0999"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG80334.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="122" mass="12575" checksum="6BA5BFC0F524C1E0" modified="2017-03-15" version="1">MVLPLLAAAACTASDAPRAFGPSYDGIEAQALDDTIINIRATVSGDASADDAIQYAECAVAQFALFNGSSFARQLRTTVETTGDVLVADSAYTISEDVPAGVRKMDAEVVMAACRDAGIPTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MVH1</accession>
    <name>A0A1M5MVH1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1047</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81308.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899785.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG81308">
        <property type="protein sequence ID" value="SHG81308"/>
        <property type="gene ID" value="SAMN05444003_1047"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012431945" evidence="1">
        <location>
            <begin position="22"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG81308.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="228" mass="23258" checksum="8213E5D554658012" modified="2017-03-15" version="1">MTQVRSTVRAALAATSLAALAACGGGAISTGAPTFGGVLSANSSPNFSDLQPVLNSAEEQRERVQGFAGSRFTAIPDDRTVVFKGYGGVDLDFAPSTSPDLSVLGDARVVVDFENDQFSGAITNMIATGASNNVTGVLGDFTFTGGSVGGANPNNFSLDYEADLLVGPNDVELSGTMDGIFRGTRANPGDRNPIKAIDATDTNPTITTGVGLNGATAHVIGESFFPTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MW04</accession>
    <name>A0A1M5MW04_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Phosphoglucomutase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1055</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the phosphohexose mutase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG81478.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899792.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1055"/>
    <dbReference type="EnsemblBacteria" id="SHG81478">
        <property type="protein sequence ID" value="SHG81478"/>
        <property type="gene ID" value="SAMN05444003_1055"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004614">
        <property type="term" value="F:phosphoglucomutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005844">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016055">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-I/II/III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005845">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005846">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036900">
        <property type="entry name" value="A-D-PHexomutase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016066">
        <property type="entry name" value="A-D-PHexomutase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005841">
        <property type="entry name" value="Alpha-D-phosphohexomutase_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045244">
        <property type="entry name" value="PGM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22573">
        <property type="entry name" value="PTHR22573"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02878">
        <property type="entry name" value="PGM_PMM_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02879">
        <property type="entry name" value="PGM_PMM_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02880">
        <property type="entry name" value="PGM_PMM_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00509">
        <property type="entry name" value="PGMPMM"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53738">
        <property type="entry name" value="SSF53738"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55957">
        <property type="entry name" value="SSF55957"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00710">
        <property type="entry name" value="PGM_PMM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PGM_PMM_I" evidence="4">
        <location>
            <begin position="12"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="domain" description="PGM_PMM_II" evidence="5">
        <location>
            <begin position="181"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="domain" description="PGM_PMM_III" evidence="6">
        <location>
            <begin position="292"/>
            <end position="405"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU004326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG81478.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="541" mass="57965" checksum="1FA9FD55C26227D3" modified="2017-03-15" version="1">MTMIPTSPIVGQKPGTSGLRKKTRVFMETPFLQNYVQSIFNGIGGIEGKTLVLGGDGRYFNTEAIQIIMKMAAANGAKKVIVGQNGLLSTPAASHLIRMHKSDGGLILSASHNPGGIDADFGLKYNMPNGGPAVEAVTAKIVQATEAIDYYKITDASDIDLAEIRQTTLGDMKIDVVSPTDDYIEMMAQLFDLDEIKRLLKSDFRMVFDAMHAVTGPYAKALLEDHLGAPAGTVINATPSLDFNKGHPDPNPVWATELMGLMTGDTPPDFGAASDGDGDRNMIVGTNMYISPSDSLAVLAAHAEAAPAFRDGLVGVARSMPTSSAVDRVAAAKGLKCFETPTGWKFFGNLLDAGEVRLCGEESAGTGGDHVREKDGLWAVMLWLNILSKTKSSVPDLMSNHWKTYGRNYYSRHDYEAIPTETADGIMGVLRGKLGVLPGQSFGGLRVISADEFAYDDPIDHSRSTGQGLRISLEDDARIVFRLSGTGTEGATIRVYLERLELDHAKLSLDPQIALSAVIEAAEDLSGIKSRTGRQAPNVIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MYT7</accession>
    <name>A0A1M5MYT7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative peptidoglycan binding domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1099</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899829.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1099"/>
    <dbReference type="EnsemblBacteria" id="SHG82441">
        <property type="protein sequence ID" value="SHG82441"/>
        <property type="gene ID" value="SAMN05444003_1099"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.101.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002477">
        <property type="entry name" value="Peptidoglycan-bd-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036365">
        <property type="entry name" value="PGBD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036366">
        <property type="entry name" value="PGBDSf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01471">
        <property type="entry name" value="PG_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47090">
        <property type="entry name" value="SSF47090"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="SSF50494"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012928880" evidence="1">
        <location>
            <begin position="21"/>
            <end position="578"/>
        </location>
    </feature>
    <feature type="domain" description="PG_binding_1" evidence="2">
        <location>
            <begin position="158"/>
            <end position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG82441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="578" mass="63045" checksum="D4D7E806C954B312" modified="2017-03-15" version="1">MTRIFAAFFAYLVLVTTAFAQQNAWVQIEARPSVAEAQSRAEVYERRLDDVAGYDVGRGWYAIVLGPYERNDAEIVLRQLRREGQIPGDSFIATGRTFRNQIWPIGRGVPTTVQSLTGNADEDQVEDVIAEVEPVQIPDETLREARDSEILLDREQKKDLQIALQWAGFYSGTIDGLYGRGTRNSMRSWQEANNHESTGVLTTRQRAELIADYNSVLEGMDLQLVRDDATGIQMQIPTGVVAFAEYEAPFARFDAKGDIPAQVLLVSQEGDQNRLFGLYEILQTLEIMPQDGPRERRNASFILEGIGDGKHSYASVRLTDGEIKGFILVWPENDDERRRRVLDLMIESYTAVDGTLDPALSRPGEDQNIDLVSGLAIRKPDFSLSGFYINDKGAVLTSSEFAGSCDYLTVNSDIDAAVTFMDADLGIAIVEPTNALAPLSVAEFQTSVPRIQSDIAVAGFPFGGVLTAPSLTFGKLADIRGLGGEEELKRLSLIAQDGDAGGPVYDNGGAVLGMLLPKANANGQVLPNDVSFSLDADAIIAALSNAGVEVQTTDSLAFMAPETLTRRAADQTVLVSCW</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MZW6</accession>
    <name>A0A1M5MZW6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1117</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82876.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1117"/>
    <dbReference type="EnsemblBacteria" id="SHG82876">
        <property type="protein sequence ID" value="SHG82876"/>
        <property type="gene ID" value="SAMN05444003_1117"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012454725" evidence="1">
        <location>
            <begin position="28"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG82876.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="186" mass="20538" checksum="1E921A7B45C6211C" modified="2017-03-15" version="1">MATRIPPFKCAVAAFVILQAVSSSAVAQTADLDALFLELKDADETSHERISNEIRLEWQKSGSAAMDLLLRRGTEALEEGNALEAAEHFSALIDHAPEFAEGYHGRASAYFADGLMGPAIDDLRQTLVLMPRHYEAMFGLASIMEGLERPEDALKVHELILEIYPLNQMALDAKTRLEEQLRGQSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N1E5</accession>
    <name>A0A1M5N1E5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1138</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83396.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1138"/>
    <dbReference type="EnsemblBacteria" id="SHG83396">
        <property type="protein sequence ID" value="SHG83396"/>
        <property type="gene ID" value="SAMN05444003_1138"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="SSF54001"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG83396.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="219" mass="25183" checksum="3EC76CC1640DB66C" modified="2017-03-15" version="1">MPRRPLAPWRDVMPSLQTGDLIFFRGPGWFTHAVDLITGGIWSHVAMVIEAKDIYPELPKDQLLLWESTTIPGQDVDADPSHINLTTGPMLVDLASRMENYAERWGYKMMSARYLHLDRTEEFRSNLSAFVRDPDVRNAGYPSTSGLLWHYLRERYTVTREERTYFCSELVAATFQAAGLLPPNPTHTSYCPRDFSERGFVPRLLRSEFGQEIYFGKTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N2M6</accession>
    <name>A0A1M5N2M6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Riboflavin biosynthesis protein RibD</fullName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName evidence="10">Diaminohydroxyphosphoribosylaminopyrimidine deaminase</fullName>
                <shortName evidence="10">DRAP deaminase</shortName>
                <ecNumber evidence="10">3.5.4.26</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="10">Riboflavin-specific deaminase</fullName>
            </alternativeName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="10">5-amino-6-(5-phosphoribosylamino)uracil reductase</fullName>
                <ecNumber evidence="10">1.1.1.193</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="10">HTP reductase</fullName>
            </alternativeName>
        </domain>
    </protein>
    <gene>
        <name evidence="15" type="ORF">SAMN05444003_1150</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15 16">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 10">Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)-pyrimidine + H(+) + H2O = 5-amino-6-(5-phospho-D-ribosylamino)uracil + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:21868"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:58453"/>
            <dbReference type="ChEBI" id="CHEBI:58614"/>
            <dbReference type="EC" id="3.5.4.26"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>5-amino-6-(5-phospho-D-ribitylamino)uracil + NADP(+) = 5-amino-6-(5-phospho-D-ribosylamino)uracil + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:17845"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:58421"/>
            <dbReference type="ChEBI" id="CHEBI:58453"/>
            <dbReference type="EC" id="1.1.1.193"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10 13">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="10 13">Binds 1 zinc ion.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 10">Cofactor biosynthesis; riboflavin biosynthesis; 5-amino-6-(D-ribitylamino)uracil from GTP: step 2/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 10">Cofactor biosynthesis; riboflavin biosynthesis; 5-amino-6-(D-ribitylamino)uracil from GTP: step 3/4.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 10">In the C-terminal section; belongs to the HTP reductase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 10">In the N-terminal section; belongs to the cytidine and deoxycytidylate deaminase family.</text>
    </comment>
    <dbReference type="EC" id="3.5.4.26" evidence="10"/>
    <dbReference type="EC" id="1.1.1.193" evidence="10"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG83672.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1150"/>
    <dbReference type="EnsemblBacteria" id="SHG83672">
        <property type="protein sequence ID" value="SHG83672"/>
        <property type="gene ID" value="SAMN05444003_1150"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00275">
        <property type="reaction ID" value="UER00401"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008703">
        <property type="term" value="F:5-amino-6-(5-phosphoribosylamino)uracil reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008835">
        <property type="term" value="F:diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009231">
        <property type="term" value="P:riboflavin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.430.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016192">
        <property type="entry name" value="APOBEC/CMP_deaminase_Zn-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002125">
        <property type="entry name" value="CMP_dCMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016193">
        <property type="entry name" value="Cytidine_deaminase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024072">
        <property type="entry name" value="DHFR-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004794">
        <property type="entry name" value="Eubact_RibD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011549">
        <property type="entry name" value="RibD_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002734">
        <property type="entry name" value="RibDG_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00383">
        <property type="entry name" value="dCMP_cyt_deam_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01872">
        <property type="entry name" value="RibD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006769">
        <property type="entry name" value="RibD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53597">
        <property type="entry name" value="SSF53597"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53927">
        <property type="entry name" value="SSF53927"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00326">
        <property type="entry name" value="eubact_ribD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00227">
        <property type="entry name" value="ribD_Cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00903">
        <property type="entry name" value="CYT_DCMP_DEAMINASES_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51747">
        <property type="entry name" value="CYT_DCMP_DEAMINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7 10 13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="10 12" id="KW-0521">NADP</keyword>
    <keyword evidence="10" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 10" id="KW-0686">Riboflavin biosynthesis</keyword>
    <keyword evidence="8 10 13" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="CMP/dCMP-type deaminase" evidence="14">
        <location>
            <begin position="1"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="11">
        <location>
            <position position="46"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="44"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="69"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="78"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="148"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="162"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="164"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="178"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="190"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="194"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="198"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="201"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="216"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="285"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <begin position="287"/>
            <end position="293"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004910"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005259"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00007417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022619"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRNR" id="PIRNR006769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR006769-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR006769-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRSR" id="PIRSR006769-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS51747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="SHG83672.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="354" mass="36475" checksum="A2BFB1833E116CDD" modified="2017-03-15" version="1">MTAALTLGRRGQGRVWPNPAVGCVIVKDGIVVGRARTADGGRPHAETQALTQAGDAARGATAYVTLEPCAHHGQTGPCAEALVASGVARVVVATGDPDPRVSGKGLNILRAGGVEVNFGVCQAEADRDLAGFFLRVREGRPFVTLKLATSVDGRIATRTGHSQWITGPEARRVVHAMRARHDAVMVGAGTARADDPSLNVRDMGDVPQPVRVVVSSDLNILMDGKLAQTAGEQPVWLVHGEQAVPNDWVAKGARSIAVPVSDGAVDIEAALNSLGEAGLTSIFCEGGGALAGSLIKAGLVDELVVFAAGLTIGGDGTPAVAAMGIDDLSLATRFDLAEFRAVGPDTLSIWRPKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N4L4</accession>
    <name>A0A1M5N4L4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1186</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84516.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899904.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG84516">
        <property type="protein sequence ID" value="SHG84516"/>
        <property type="gene ID" value="SAMN05444003_1186"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="41"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="78"/>
            <end position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG84516.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="104" mass="10753" checksum="1DE606F37D8C1A14" modified="2017-03-15" version="1">MNGDPRAVWQLVAILAVTQLSISIFAAYSSSQEILSDGACLGGIFGSLANIALLAISILLVVVFGLKSLIHKSQHWAVAPFLTLALTSTLALAISSGAALRCTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NAA8</accession>
    <name>A0A1M5NAA8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized conserved protein, DUF983 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1278</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG86474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899982.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1278"/>
    <dbReference type="EnsemblBacteria" id="SHG86474">
        <property type="protein sequence ID" value="SHG86474"/>
        <property type="gene ID" value="SAMN05444003_1278"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009325">
        <property type="entry name" value="DUF983"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06170">
        <property type="entry name" value="DUF983"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="58"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="85"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG86474.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="126" mass="13936" checksum="8605D90297D23BE6" modified="2017-03-15" version="1">MSDVVEEREMKPAMWRGLKRKCPNCGQGSLFAGYLKTADSCSHCGQDFTAHRADDGPAYLTILVVGHIIGFAMHFIWSAYRPDPLTMALVLTAGSVALSLWLLPRLKGMIIAIQWAKRMHGFGKEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NCL9</accession>
    <name>A0A1M5NCL9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Tetratricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1330</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87270.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900026.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1330"/>
    <dbReference type="EnsemblBacteria" id="SHG87270">
        <property type="protein sequence ID" value="SHG87270"/>
        <property type="gene ID" value="SAMN05444003_1330"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5011979662" evidence="1">
        <location>
            <begin position="20"/>
            <end position="285"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG87270.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="285" mass="31345" checksum="32C7AEF4E18DFA05" modified="2017-03-15" version="1">MRHPILIPLSVAAALALSACDNSGDAQVERALQDLNVVDETNLNDVMLTIGDPDEAVNYFRGASANDPGRIDLMRGLAKSLIRAGRASDAVAAWQAVVAHPEVSNDDRVELADAYIRVNDWDAAAATLNTIPPTYETFKRYRLEAMVADSKEQWEKADSFYETAVGLTTTPAGVYNNWGYSKLTRGDYAAAERLFLDALRHNSSMFTAKNNLVLARGAQRNYDLPVVEMSQIERAQLLHTMALTAIKQNDVITGKSLLREAIDTHPQHFAEATRSLRALEDNVAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NEE0</accession>
    <name>A0A1M5NEE0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Tyrosine recombinase XerC</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">xerC</name>
        <name evidence="13" type="ORF">SAMN05444003_1365</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC-XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Forms a cyclic heterotetrameric complex composed of two molecules of XerC and two molecules of XerD.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the 'phage' integrase family. XerC subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG87890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900056.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1365"/>
    <dbReference type="EnsemblBacteria" id="SHG87890">
        <property type="protein sequence ID" value="SHG87890"/>
        <property type="gene ID" value="SAMN05444003_1365"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009037">
        <property type="term" value="F:tyrosine-based site-specific recombinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007059">
        <property type="term" value="P:chromosome segregation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01808">
        <property type="entry name" value="Recomb_XerC_XerD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044068">
        <property type="entry name" value="CB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004107">
        <property type="entry name" value="Integrase_SAM-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023009">
        <property type="entry name" value="Tyrosine_recombinase_XerC/XerD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02899">
        <property type="entry name" value="Phage_int_SAM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51900">
        <property type="entry name" value="CB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="3 9" id="KW-0132">Cell division</keyword>
    <keyword evidence="4 9" id="KW-0159">Chromosome partition</keyword>
    <keyword evidence="2 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 9" id="KW-0229">DNA integration</keyword>
    <keyword evidence="7 9" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="6 9 10" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Core-binding (CB)" evidence="12">
        <location>
            <begin position="7"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="domain" description="Tyr recombinase" evidence="11">
        <location>
            <begin position="119"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="162"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="185"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="253"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="256"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="279"/>
        </location>
    </feature>
    <feature type="active site" description="O-(3'-phospho-DNA)-tyrosine intermediate" evidence="9">
        <location>
            <position position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHG87890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="307" mass="33429" checksum="A6019524BB941614" modified="2017-03-15" version="1">MAGVISPALADALAGWLDHQRALANVSENTLKAYQTDVLGFLSFMTLHKGEPQGLAPMAQITVSDMRSWMAHERGRGLGARSLARSLSAVKNFYKWLADREEFEPTAVLSTRSPKFQKKLPRPLAQDAAAAMIETVELQTQEPWIAARDQAVITLLYGCGLRISEALSLTGGDTPLPATLRITGKGNKTRIVPVIDAARQAVDRYLHLCPYDLPPESPLFRSVRGGALNPRAIQKVMEQTRLQLGLPASATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTAVDTAHLMDVYDKAHPRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NHG3</accession>
    <name>A0A1M5NHG3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">RNA polymerase, sigma 32 subunit, RpoH</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_1424</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89016.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900109.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1424"/>
    <dbReference type="EnsemblBacteria" id="SHG89016">
        <property type="protein sequence ID" value="SHG89016"/>
        <property type="gene ID" value="SAMN05444003_1424"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000943">
        <property type="entry name" value="RNA_pol_sigma70"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007630">
        <property type="entry name" value="RNA_pol_sigma70_r4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04545">
        <property type="entry name" value="Sigma70_r4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00046">
        <property type="entry name" value="SIGMA70FCT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0731">Sigma factor</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="5">
        <location>
            <begin position="45"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4" evidence="6">
        <location>
            <begin position="227"/>
            <end position="278"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04545"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHG89016.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="292" mass="33279" checksum="79E10276341295BD" modified="2017-03-15" version="1">MAFDGFNDQTLSRTAMKAELLDAETELALAYAWRDHKDEQALHRLINAYMRLAISMAAKFKRYGAPMNDLIQEASVGLMKAADKFDPDRGVRFSTYAVWWIKASIQDYVMRNWSMVRTGSTSSQKSLFFNMRRVQARLEREAAAEGKVLERHVMHELIATEVGVPIHDVEMMEGRLSGSDFSLNATQSTEDEGREWIDALEDDGPQAAETVENNHDQDTLRQWLLSALASLNERERFIVSERKLREDPRTLESLGVELGLSKERVRQLEAAAFGKMRKKLEAESSEVHAFFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NRU5</accession>
    <name>A0A1M5NRU5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">2,4-dienoyl-CoA reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1540</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">In the N-terminal section; belongs to the NADH:flavin oxidoreductase/NADH oxidase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91653.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1540"/>
    <dbReference type="EnsemblBacteria" id="SHG91653">
        <property type="protein sequence ID" value="SHG91653"/>
        <property type="gene ID" value="SAMN05444003_1540"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001155">
        <property type="entry name" value="OxRdtase_FMN_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00724">
        <property type="entry name" value="Oxidored_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Oxidored_FMN" evidence="2">
        <location>
            <begin position="18"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="domain" description="Pyr_redox_2" evidence="3">
        <location>
            <begin position="400"/>
            <end position="627"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHG91653.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="663" mass="69740" checksum="DDFAACEF9702550E" modified="2017-03-15" version="1">MTLVGATSAKAHHGFDRLFSPLRVGPCTLKNRIFSTGHMAVMLDGHKPSAAMVAYHRAKAKGGAALTIIEAARVHPSGNSGRPAIRAYDPSCIDGYAALAKACQPYGCRVFAQLSHPGREMTMAADGTHAVAYAPSAVPNERFHVMPRALTPDLIEEIIAGFETSAAHMAAAGLDGVELVASHGYLLGQFLNPRVNLRDDEYGGSFENRLRFVREAIAAARRGAGDDLAVGIRLSGDEKDHDGIDASDMLDISRALGADPTLDYLNVTAGTSAGLAGSTHIVPSMRAEVGYTAPLAAAIKEVASKPIFVAGRINQPQTAEQVLRDGAADMCGMTRALIADPLMPQKAVAGQVDDIRACVACNQACIGHMLNAQPISCIQHPETGRELAFGTLSPATKQRNVLVVGGGPAGLKAASVAAQRGHHVTLYEAKATLGGQVNLAQNLPGRAEFGGVTTNLAREAESAGVEIQLNTKITADHIQCDAPDVLIVATGGTAYMPPIEGAGDGHVVTAQQVLEGRANVGARAVIADWRCDWVGLGMAERLARDGCHVRLAVNGMVAGQTIPQYARDAWLGDLHRLGVVILPHMRLHGLDAEDAYFQHTLSGEAVILEDVDTLVTALGTRSDTALEEALRDWSGEMHVIGDALCPRTVEEAVFEGLKTAATL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NVG9</accession>
    <name>A0A1M5NVG9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1592</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG92973.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1592"/>
    <dbReference type="EnsemblBacteria" id="SHG92973">
        <property type="protein sequence ID" value="SHG92973"/>
        <property type="gene ID" value="SAMN05444003_1592"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="50"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="88"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="145"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="200"/>
            <end position="221"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG92973.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="388" mass="41299" checksum="FF1F1518C3E533B4" modified="2017-03-15" version="1">MSELREPEAEPHFSQPVRQIISMLIVLGLVSGVIYIGLDQMRQIFLSNPALNGLIVMVFVIGVLSTFAQVYGLMRSVQWIEGFAGERVGANLVQAPPLLAPLATLLRSRGARMQISSSSSRSILDSVGQRIDEVREITRYIGNTLIFLGLLGTFYGLATTVPALVETIRSLSPEEGQSGADVFSRLQSGLENQLGGMGTAFSSSLLGLAGSLVVGLLELFAGHGQNRFYQELEEWLSSITRLGYAGDDAGSDEGGSAVGAYVDHLAEQMEALQDTFAKAEASRIETDARIAALTSAVEAIATQGQAAGVDDSTSALLANVAEGQSDLIEKLNAGGIDGIDAESRMRLRSIDVQLLRILEELAAGRQQSTADLRSDLAELTKAIKGKGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NX27</accession>
    <name>A0A1M5NX27_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Peptidoglycan glycosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_1637</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG94038.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900299.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1637"/>
    <dbReference type="EnsemblBacteria" id="SHG94038">
        <property type="protein sequence ID" value="SHG94038"/>
        <property type="gene ID" value="SAMN05444003_1637"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008658">
        <property type="term" value="F:penicillin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009002">
        <property type="term" value="F:serine-type D-Ala-D-Ala carboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005311">
        <property type="entry name" value="PBP_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036138">
        <property type="entry name" value="PBP_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001460">
        <property type="entry name" value="PCN-bd_Tpept"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017790">
        <property type="entry name" value="Penicillin-binding_protein_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03717">
        <property type="entry name" value="PBP_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00905">
        <property type="entry name" value="Transpeptidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56519">
        <property type="entry name" value="SSF56519"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03423">
        <property type="entry name" value="pbp2_mrdA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PBP_dimer" evidence="4">
        <location>
            <begin position="63"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="domain" description="Transpeptidase" evidence="3">
        <location>
            <begin position="272"/>
            <end position="605"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="626"/>
            <end position="649"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="627"/>
            <end position="649"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00905"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF03717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHG94038.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="649" mass="71251" checksum="4761753CE6305F4C" modified="2017-03-15" version="1">MKRPAKDQAFSERMISRRALLLGSAQVGFVGLLGWRMQSMQVEQADQFRLLAEENRVNIRLLPPSRGLIFDINGQPIADNEQNYRVVMVREDAGDVEAVLAKLTEIVDIPDETIARAVEEINRRSPFVPVTIADRLAWDDVAQINVNAPALPGISAEVGLSRVYPFGADLSHVVGYVGPVSDYDLSQGYLSEDNDPLLQIPKFQVGKTGVEAKEEQILRGSAGTKRIEVNALGRVMRELDRAEGESGKDIQLTIDADLQSYVQARLNGESAGAVVIDLENGDLRAIASAPTFDPNLFVRGISTKDWRDLNENKYRPLAAKAVQGTYPPGSTFKMITALAALEDGVVDAEETVYCPGFTDVFSTRFHCWKRAGHGNINLHESLKQSCDCYYYDISQRVGIDKMAAMARKLGLGVRHDLPLSAVASGLAPDKDWKKRVRNEDWRIGDTVNASIGQGYVLASPLQLAVMTARIATGREVTPRLIKSIDGIETPSGLGESLGLNENSLRRIRASMVDVSNHRRGTAYGSRIVADGMQMAGKTGTSQVRRITEEERANGVTKNEDLPWERRDHALFVDFAPVENPRFAIAVVVEHGGGGSRAAAPIARDITLQALYGGTPPLDAYPTAARPEIEEQQRRIRDFVVPGRKTQDRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PLN6</accession>
    <name>A0A1M5PLN6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1704</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH02439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900520.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1704"/>
    <dbReference type="EnsemblBacteria" id="SHH02439">
        <property type="protein sequence ID" value="SHH02439"/>
        <property type="gene ID" value="SAMN05444003_1704"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH02439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="285" mass="32493" checksum="E8312257D120D6DC" modified="2017-03-15" version="1">MSFPDLSSFLGQNAKLKGPIALIFMEDAVEVASTLRHHLASGFKAVVALGSPNIEIDGAVEEQIHRIDYDMTVEDALLDAVNAFIKAYPTAWIFYCYNSEYLFFPFCETRSVGEMAAFAMEERRPHLLTYVIDLYAGDLWSHPNAVSIEDAHLDRSGYYALARKDAAGEFKERQLDFFGGLRWRFEEHIPTARRRIDRIALFQAKPNLTLLGDHTLNDPEMNTYACPWHHSLTAAIASFRTAKALKRNPGSSYAIETFKWRNSAKFNWHSQQLMDLGLMEPGQWF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PPE3</accession>
    <name>A0A1M5PPE3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sugar lactone lactonase YvrE</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1754</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH03449.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900560.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1754"/>
    <dbReference type="EnsemblBacteria" id="SHH03449">
        <property type="protein sequence ID" value="SHH03449"/>
        <property type="gene ID" value="SAMN05444003_1754"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013658">
        <property type="entry name" value="SGL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005511">
        <property type="entry name" value="SMP-30"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08450">
        <property type="entry name" value="SGL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01790">
        <property type="entry name" value="SMP30FAMILY"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SGL" evidence="1">
        <location>
            <begin position="10"/>
            <end position="244"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08450"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH03449.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="273" mass="30214" checksum="BF200C0C18BF30B4" modified="2017-03-15" version="1">MIYDDTVCELGEGPLWHPERKQFFWFDILGKRLHTKGQYWQFDEHISAAGWVDHDHFLIASETKLFRFNIETGAQEKIIDLEADIPETRSNDGRADPQGGFWIGTMGKSAEAYAGTIYRFYKGELREIVGHVTISNSICFAVDGKTAFYTDTDTQLVMALPLGKDGWPKGEAYVHLDLTGTPYRPDGAVVDADGNLWSAQWGVGRVAGYAPDGEFIEAFDVPAIQSSCPSFGGEDLSTLFCTSAAVGQTGGDHGKTFAIETKYTGQKEYRVIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PTH1</accession>
    <name>A0A1M5PTH1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha</fullName>
            <shortName evidence="10">ACCase subunit alpha</shortName>
            <shortName evidence="10">Acetyl-CoA carboxylase carboxyltransferase subunit alpha</shortName>
            <ecNumber evidence="10">2.1.3.15</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">accA</name>
        <name evidence="12" type="ORF">SAMN05444003_1846</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12 13">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>acetyl-CoA + N(6)-carboxybiotinyl-L-lysyl-[protein] = malonyl-CoA + N(6)-biotinyl-L-lysyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:54728"/>
            <dbReference type="Rhea" id="RHEA-COMP:10505"/>
            <dbReference type="Rhea" id="RHEA-COMP:10506"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:57384"/>
            <dbReference type="ChEBI" id="CHEBI:83144"/>
            <dbReference type="ChEBI" id="CHEBI:83145"/>
            <dbReference type="EC" id="2.1.3.15"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 10">Lipid metabolism; malonyl-CoA biosynthesis; malonyl-CoA from acetyl-CoA: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Acetyl-CoA carboxylase is a heterohexamer composed of biotin carboxyl carrier protein (AccB), biotin carboxylase (AccC) and two subunits each of ACCase subunit alpha (AccA) and ACCase subunit beta (AccD).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the AccA family.</text>
    </comment>
    <dbReference type="EC" id="2.1.3.15" evidence="10"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05257.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900640.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1846"/>
    <dbReference type="EnsemblBacteria" id="SHH05257">
        <property type="protein sequence ID" value="SHH05257"/>
        <property type="gene ID" value="SAMN05444003_1846"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00655">
        <property type="reaction ID" value="UER00711"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009317">
        <property type="term" value="C:acetyl-CoA carboxylase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003989">
        <property type="term" value="F:acetyl-CoA carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016743">
        <property type="term" value="F:carboxyl- or carbamoyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:2001295">
        <property type="term" value="P:malonyl-CoA biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00823">
        <property type="entry name" value="AcetylCoA_CT_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001095">
        <property type="entry name" value="Acetyl_CoA_COase_a_su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011763">
        <property type="entry name" value="COA_CT_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42853">
        <property type="entry name" value="PTHR42853"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03255">
        <property type="entry name" value="ACCA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01069">
        <property type="entry name" value="ACCCTRFRASEA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00513">
        <property type="entry name" value="accA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50989">
        <property type="entry name" value="COA_CT_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 10" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="6 10" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="3 10" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="8 10" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="5 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 10 12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="CoA carboxyltransferase C-terminal" evidence="11">
        <location>
            <begin position="39"/>
            <end position="293"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="SHH05257.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="320" mass="34924" checksum="E2DE6AFE4346D07A" modified="2017-03-15" version="1">MTQYLEFEKPLAEIEGKAEELRALARENDEMDVEKEAAALDKKADDLLKSLYADLTPWRKCQVARHQDRPHCQDYIDALFTEYTPLAGDRNFADDHAVMGGIARLDDKPVMVIGHEKGNDTKSRIERNFGMARPEGYRKAIRLMELADKFGLPVITLVDTPGAYPGKGAEERGQSEAIARSTEKCLELGVPLISVVIGEGGSGGAVAFATANKVAMLEHSIYSVISPEGCASILWKDAEKMREAAEALRLTAQDLNKLGVCDEIIKEPLGGAHRDRAATIEAVGKALTKMLGQLDGKSADKVRGDRRKKYLDLGSKGLAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PUA6</accession>
    <name>A0A1M5PUA6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1837</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH05069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900631.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH05069">
        <property type="protein sequence ID" value="SHH05069"/>
        <property type="gene ID" value="SAMN05444003_1837"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009913030" evidence="1">
        <location>
            <begin position="23"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH05069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="109" mass="11245" checksum="79C701736D77F520" modified="2017-03-15" version="1">MSIKMIALAAATVAATASAASADSYFGFEDRLENSSTLELSTVRAAADGVVEIYDGRFGDLGALLGTQEVAAGANKDVRVNVGHGPDADVIAVLKIDGQIVAQQEYEVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PYC6</accession>
    <name>A0A1M5PYC6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">2,4-dienoyl-CoA reductase (NADPH2)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_1931</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">In the N-terminal section; belongs to the NADH:flavin oxidoreductase/NADH oxidase family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH06865.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900710.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1931"/>
    <dbReference type="EnsemblBacteria" id="SHH06865">
        <property type="protein sequence ID" value="SHH06865"/>
        <property type="gene ID" value="SAMN05444003_1931"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001155">
        <property type="entry name" value="OxRdtase_FMN_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00724">
        <property type="entry name" value="Oxidored_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Oxidored_FMN" evidence="2">
        <location>
            <begin position="7"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="domain" description="Pyr_redox_2" evidence="3">
        <location>
            <begin position="376"/>
            <end position="647"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH06865.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="674" mass="72518" checksum="DBED37424B98EFBF" modified="2017-03-15" version="1">MSHYPNLLAPLDLGFTTLKNRVLMGSMHTGLEETKDWNRVAEFYATRARGGVALMVTGGMAPNREGGVFPGAAGLFSEDDIANHKIVTDRVHAADGKIAMQILHAGRYAYSPECVAPSAVKSPISPFPPKELDAEGIEKQISDIVTAATRAQQAGYDGVEVMGSEGYFINQFLVTHTNKRTDEWGGPYENRMRLPVEIVRRVREAVGTDFIVIYRLSMIDLVPNGSTWEEVVQLAKAIEDAGATIINTGIGWHEARIPTIATSVPRRAFTWVTKKLMGEVSIPVITSNRINMPDVAEAVLSDGCADMVSMARPFLADPDFVAKAEAGRADKIAPCIACNQACLDHTFSGKMSSCLVNPRACFETELVVETAEAPKTVAVVGAGPAGLAAALTAAERGHAVTLIDKSDEIGGQLNMAKQVPGKEEFWGLVDYFRTMVAESGIAVQLETTATADLLEDYDEVIIATGVMPRDPQIDGQDGENVLSYIDVLKAGKPVGDKVAIVGAGGIGFDVAEYLVTDDSPTEDLDEWLEEWGVGDPEAVRGGLRVEGPQPEKATREVTLLQRKAQKLGKNLGKTTGWIHRASLQMKDVKMVGGVNYERIDDQGLHVSYGEARENPEVIEADTVVLCAGQLPERTLADELEARGKNIHVIGGADVAAELDAKRAIDQGTRLASTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5PZ90</accession>
    <name>A0A1M5PZ90_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cell division protein ZapE</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1939</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07010.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900717.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1939"/>
    <dbReference type="EnsemblBacteria" id="SHH07010">
        <property type="protein sequence ID" value="SHH07010"/>
        <property type="gene ID" value="SAMN05444003_1939"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005654">
        <property type="entry name" value="ATPase_AFG1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12169">
        <property type="entry name" value="PTHR12169"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03969">
        <property type="entry name" value="AFG1_ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="3" id="KW-0132">Cell division</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH07010.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="353" mass="40025" checksum="F69351852E5EAF3A" modified="2017-03-15" version="1">MTMQSAYEAEVAQGRIKSDPAQLAVLPELERVRFALTQPVQKTGFFKRKAEPIKGLYMWGGVGRGKSMLMDLLYEQVDAAKERWHFHAFMQWVHSEMTEVRKTGVDDAIKPVAKTLSDRLRFLAFDEMQITDITDAMIVGRLFENMFEAGVVVVTTSNRPPTDLYKNGLNRQLFVPFIDLLQDRMVVHELASDTDHRQGRLSGSDVYFTPLNADASVQMNQVWTELSGGCEEELTLHVKGREVVIPRFHNGIARAKFFDLCGKPLGAGDYLALSEAVRVLLLDDIPRLSRQNFNEAKRFVTLIDALYEAKVQLICSAAAKPEMLYVEGEGTFEFERTASRLREMQSDDWMSAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q031</accession>
    <name>A0A1M5Q031_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1956</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07358.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900732.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1956"/>
    <dbReference type="EnsemblBacteria" id="SHH07358">
        <property type="protein sequence ID" value="SHH07358"/>
        <property type="gene ID" value="SAMN05444003_1956"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.280.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007420">
        <property type="entry name" value="DUF465"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038444">
        <property type="entry name" value="DUF465_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04325">
        <property type="entry name" value="DUF465"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH07358.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="55" mass="6244" checksum="E5A065B3F3E32383" modified="2017-03-15" version="1">MSLSSHLQELKKKHAHLSTSVETLQRSPASDDLEIARLKKEKLMLKEEISRLSAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q0X0</accession>
    <name>A0A1M5Q0X0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acyl homoserine lactone synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1984</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH07917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1984"/>
    <dbReference type="EnsemblBacteria" id="SHH07917">
        <property type="protein sequence ID" value="SHH07917"/>
        <property type="gene ID" value="SAMN05444003_1984"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001690">
        <property type="entry name" value="Autoind_synthase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00765">
        <property type="entry name" value="Autoind_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0071">Autoinducer synthesis</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH07917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="201" mass="22900" checksum="BF835B4CECD06F52" modified="2017-03-15" version="1">MSVAAHDDIEISILKLPGDASQWELVMRFLTLRRSIFIHKKKWQLFDEGSIEFEQYDTATVATYVIAHRQGEIVAGARLLRCDTKIGPEYSYMIRDAYLKKIEIPSEICFEEPPVTSDAWEITRAISIDKTPIPMQMVLSTIHDYIQKDGGKVCLFLGPPAFLRMARRAGYEPRRVGNIAQDDSGRYLVLAFDIRQTDEAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q7P6</accession>
    <name>A0A1M5Q7P6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glucose/arabinose dehydrogenase, beta-propeller fold</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2096</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH10048.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2096"/>
    <dbReference type="EnsemblBacteria" id="SHH10048">
        <property type="protein sequence ID" value="SHH10048"/>
        <property type="gene ID" value="SAMN05444003_2096"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012938">
        <property type="entry name" value="Glc/Sorbosone_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011041">
        <property type="entry name" value="Quinoprot_gluc/sorb_DH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07995">
        <property type="entry name" value="GSDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50952">
        <property type="entry name" value="SSF50952"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012702900" evidence="1">
        <location>
            <begin position="18"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="domain" description="GSDH" evidence="2">
        <location>
            <begin position="55"/>
            <end position="376"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH10048.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="385" mass="40610" checksum="2A1431D97A6A8073" modified="2017-03-15" version="1">MLRLIMVLCALPLAALAQVEQGAPNANFAPAFENQTRAPALAETRLAVSVFADGLERPWGIAPLSSSQFLVTERGGTMRVVSADGSVSGPLSGVPQVSATGQGGLLDVAVSPRFAQDRLVFWTYSKPVRGGSVTAAARGVLSAEGRLGDVRDIFVQTDPNSGGRHFGSRIIPMSDSTVWITTGDRGEGDSGDMPQQLDSTVGKVIRVNADGSVPSDNPFVGRAGDDQIWSLGHRNMQGAAIDGRGRLWTIEHGPRGGDELNRPLAGRNYGWPIVSYGINYSGRALGSGAAVLEGTEQPVYYWDPVIAPAGMSFYDGPYAAWQGDLLIGSLNPGGLVRLKISGDRVVGEERLLPDVGRVRDVEVLADGRVLVLVDGGEILAVRPEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q7W6</accession>
    <name>A0A1M5Q7W6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="15">Branched-chain-amino-acid aminotransferase</fullName>
            <shortName evidence="15">BCAT</shortName>
            <ecNumber evidence="15">2.6.1.42</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="primary">ilvE</name>
        <name evidence="16" type="ORF">SAMN05444003_2094</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 15">Acts on leucine, isoleucine and valine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 15">
            <text>2-oxoglutarate + L-isoleucine = (S)-3-methyl-2-oxopentanoate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:24801"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:35146"/>
            <dbReference type="ChEBI" id="CHEBI:58045"/>
            <dbReference type="EC" id="2.6.1.42"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 15">
            <text>2-oxoglutarate + L-leucine = 4-methyl-2-oxopentanoate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:18321"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:17865"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:57427"/>
            <dbReference type="EC" id="2.6.1.42"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 15">
            <text>2-oxoglutarate + L-valine = 3-methyl-2-oxobutanoate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:24813"/>
            <dbReference type="ChEBI" id="CHEBI:11851"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:57762"/>
            <dbReference type="EC" id="2.6.1.42"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4 14">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="6 15">Amino-acid biosynthesis; L-isoleucine biosynthesis; L-isoleucine from 2-oxobutanoate: step 4/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="8 15">Amino-acid biosynthesis; L-leucine biosynthesis; L-leucine from 3-methyl-2-oxobutanoate: step 4/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="7 15">Amino-acid biosynthesis; L-valine biosynthesis; L-valine from pyruvate: step 4/4.</text>
    </comment>
    <comment type="similarity">
        <text evidence="9 13">Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.42" evidence="15"/>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH10020.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900849.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2094"/>
    <dbReference type="EnsemblBacteria" id="SHH10020">
        <property type="protein sequence ID" value="SHH10020"/>
        <property type="gene ID" value="SAMN05444003_2094"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00047">
        <property type="reaction ID" value="UER00058"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00048">
        <property type="reaction ID" value="UER00073"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00049">
        <property type="reaction ID" value="UER00062"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052656">
        <property type="term" value="F:L-isoleucine transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052654">
        <property type="term" value="F:L-leucine transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050048">
        <property type="term" value="F:L-leucine:2-oxoglutarate aminotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052655">
        <property type="term" value="F:L-valine transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009098">
        <property type="term" value="P:leucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009099">
        <property type="term" value="P:valine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001544">
        <property type="entry name" value="Aminotrans_IV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018300">
        <property type="entry name" value="Aminotrans_IV_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036038">
        <property type="entry name" value="Aminotransferase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005785">
        <property type="entry name" value="B_amino_transI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043132">
        <property type="entry name" value="BCAT-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043131">
        <property type="entry name" value="BCAT-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01063">
        <property type="entry name" value="Aminotran_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56752">
        <property type="entry name" value="SSF56752"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01122">
        <property type="entry name" value="ilvE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00770">
        <property type="entry name" value="AA_TRANSFER_CLASS_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 15" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="15 16" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="12 15" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="11 14" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="15 16" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000627"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00000995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001745"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00003109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00004824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00004931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00005072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00009320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU004106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU004516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="RuleBase" id="RU364094"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="SHH10020.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="288" mass="32012" checksum="8AE8E62A0BAEF636" modified="2017-03-15" version="1">MAAYDDRDGKIWFDGQMVDWRAANVHVLSHAMHYASSVFEGERAYNGKIFLSREHSERLHFSAGELDFEIPYTVDEIEAAKAQVLQVNGLTDAYVRAVAWRGAGEDMGVASARNPVHLAIAAWEWGNYYGDAKTKGAKIDIAKWKRPSPETIPVHAKAAGLYMICTTSKHAAEAKGCSDALFMDWRGYVAECTGANIFFVKDGEVHTPMADCFLNGLTRQTVIGRLKEKQIKVHERVIMPNELESFEQCWLTGTAAEVTPVGQIGDYNFEVGSLVLDVADDYEKLVRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q836</accession>
    <name>A0A1M5Q836_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glutamate synthase (NADPH) small subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2102</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH10162.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900854.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000002.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2102"/>
    <dbReference type="EnsemblBacteria" id="SHH10162">
        <property type="protein sequence ID" value="SHH10162"/>
        <property type="gene ID" value="SAMN05444003_2102"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1060.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028261">
        <property type="entry name" value="DPD_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006006">
        <property type="entry name" value="GltD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009051">
        <property type="entry name" value="Helical_ferredxn"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42783:SF1">
        <property type="entry name" value="PTHR42783:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14691">
        <property type="entry name" value="Fer4_20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01318">
        <property type="entry name" value="gltD_gamma_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fer4_20" evidence="2">
        <location>
            <begin position="25"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="domain" description="Pyr_redox_2" evidence="1">
        <location>
            <begin position="150"/>
            <end position="455"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH10162.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="475" mass="51578" checksum="58EF5EC810F74A54" modified="2017-03-15" version="1">MAGQKMLKFTTVDRDMPEKRVPNLRKQDFNEIYAEYARDKAAEQASRCSQCGVPYCQSHCPLHNNIPDWLRLTAEGRLQEAYEISQATNTFPEICGRICPQDRLCEGNCVIEQSGHGTVTIGSVEKYITDTAFEEGWVKPISPSVERAESVGIIGAGPGGLAAADRLRREGVQVTVYDRYDRGGGLLTYGIPGFKLEKDTVMQRMQQLEDGGVQFVLNCNVGEDLSFDAIRGKHDAVLIATGVYKSRDLPDADADGIVRAIDYLTASNRKSFGDDVEEFDSGELNAVGKRVVVIGGGDTAMDCVRTAIRQGAESVKCLYRRDRANMPGSQREVANAEEEGVEFVWLSAPARFEGDAVTGVTVQKMRLGQPDATGRQAPEVIQGADYLEGADLVIKALGFEPEDLPALWGVEGLEVTRWGTIKAEFTTGQTSLEGVFAAGDIVRGASLVVWAIKDGRDCADAILDYLSSANAVAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QJL3</accession>
    <name>A0A1M5QJL3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Glycosyl transferase family 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2160</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14282.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2160"/>
    <dbReference type="EnsemblBacteria" id="SHH14282">
        <property type="protein sequence ID" value="SHH14282"/>
        <property type="gene ID" value="SAMN05444003_2160"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH14282.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="361" mass="42227" checksum="B7E88E0979CFABA5" modified="2017-03-15" version="1">MGNAGQAKSPFQRTRPFTQPAKLSRALKLYRLRWKRRRFLVRSLRKRSELVPKQDRTTGIKRTDILLFVTVRNEEERLPYFLDYYRRLGIDHFLFVDNASTDGTGELLRRQDDVSLWSTDQSYRLSRFGVDWLTALQFRYGGGHWCLTVDADELLVYPDCETRGLADLTTEMERVGQTALGAVMLDMFPRRSISEVVYQSGEDPIESLPWFDANGYRTQIHQTYENEWIQGGVRDRYFFVSDPSRAPTLNKFPLVKWNRRYAYVNSTHQILPVKLHQFLDLDTQKHVSGALLHTKFLPSIMEKSLEELVRKQHFQNSDLYQNYHQTLAEGPDLWVETAQKYTNSHLLVELGLISKGQLPEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QK83</accession>
    <name>A0A1M5QK83_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7">Chaperone protein DnaK</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">HSP70</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Heat shock 70 kDa protein</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Heat shock protein 70</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">dnaK</name>
        <name evidence="11" type="ORF">SAMN05444003_2166</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Acts as a chaperone.</text>
    </comment>
    <comment type="induction">
        <text evidence="7">By stress conditions e.g. heat shock.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 8">Belongs to the heat shock protein 70 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14408.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900982.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2166"/>
    <dbReference type="EnsemblBacteria" id="SHH14408">
        <property type="protein sequence ID" value="SHH14408"/>
        <property type="gene ID" value="SAMN05444003_2166"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1270.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.34.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00332">
        <property type="entry name" value="DnaK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012725">
        <property type="entry name" value="Chaperone_DnaK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018181">
        <property type="entry name" value="Heat_shock_70_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029048">
        <property type="entry name" value="HSP70_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029047">
        <property type="entry name" value="HSP70_peptide-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013126">
        <property type="entry name" value="Hsp_70_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19375">
        <property type="entry name" value="PTHR19375"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00012">
        <property type="entry name" value="HSP70"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100920">
        <property type="entry name" value="SSF100920"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100934">
        <property type="entry name" value="SSF100934"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02350">
        <property type="entry name" value="prok_dnaK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00297">
        <property type="entry name" value="HSP70_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00329">
        <property type="entry name" value="HSP70_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01036">
        <property type="entry name" value="HSP70_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="evidence at transcript level"/>
    <keyword evidence="5 7 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0143">Chaperone</keyword>
    <keyword evidence="9" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4 7 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3 7" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7" id="KW-0346">Stress response</keyword>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="602"/>
            <end position="634"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="9">
        <location>
            <begin position="246"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="9">
        <location>
            <begin position="511"/>
            <end position="584"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="10">
        <location>
            <begin position="609"/>
            <end position="625"/>
        </location>
    </feature>
    <feature type="modified residue" description="Phosphothreonine; by autocatalysis" evidence="7">
        <location>
            <position position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007381"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00014415"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003322"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH14408.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="634" mass="68344" checksum="2B79A9BC4AA11897" modified="2017-03-15" version="1">MAKVIGIDLGTTNSCIAIMDGSEPRVIENAEGARTTPSIVAFTDDERLVGQPAKRQAVTNPENTIFAVKRLIGRRFDDKDLAKDKKNMPFAVVDGGNGDAWVESKGETYSPSQISAFILGKMKETAESYLGEPVSQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKDTQTIAVYDLGGGTFDVTILEIDDGLFEVKSTNGDTFLGGEDFDMRIVNYLADEFKKENSVDLTKDKMALQRLKEAAEKAKIELSSSASTEINQPFISMGSDGQPLHMVMKLTRAKLESLVGDLIKSSMKPCQAAIKDAGLSTGDIDEVVLVGGMTRMPKVQEEVEKFFGKKPHQGVNPDEVVAMGAAIQAGVLQGDVKDVVLLDVTPLSLGIETLGGVFTRLIDRNTTIPTKKSQTFSTAEDNQNAVTLRVFQGEREMAADNKILGQFNLEDIPPAPRGMPQIEVTFDIDANGIVSVAAKDKGTGKEQSITIQASGGLSDEDIEAMVKDAEDNAEADKERRELIEAKNQAESLIHSTEKSLEEHSDKVDPTTVEAIELAIAALKDDLEDEKVTADKLQAGVQNVTEAAMKLGEAIYKASQDEADGDEPAGADEDDIVDADFEDLDSDKRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QL96</accession>
    <name>A0A1M5QL96_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 9 10">Translation initiation factor IF-2</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">infB</name>
        <name evidence="13" type="ORF">SAMN05444003_2182</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9 10">One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9 10">Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH14726.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901012.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2182"/>
    <dbReference type="EnsemblBacteria" id="SHH14726">
        <property type="protein sequence ID" value="SHH14726"/>
        <property type="gene ID" value="SAMN05444003_2182"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03702">
        <property type="entry name" value="IF2_mtIF2_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10050">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00100_B">
        <property type="entry name" value="IF_2_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013575">
        <property type="entry name" value="IF2_assoc_dom_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044145">
        <property type="entry name" value="IF2_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006847">
        <property type="entry name" value="IF2_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000178">
        <property type="entry name" value="TF_IF2_bacterial-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015760">
        <property type="entry name" value="TIF_IF2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023115">
        <property type="entry name" value="TIF_IF2_dom3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036925">
        <property type="entry name" value="TIF_IF2_dom3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43381">
        <property type="entry name" value="PTHR43381"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11987">
        <property type="entry name" value="IF-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08364">
        <property type="entry name" value="IF2_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04760">
        <property type="entry name" value="IF2_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52156">
        <property type="entry name" value="SSF52156"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00487">
        <property type="entry name" value="IF-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01176">
        <property type="entry name" value="IF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="8 9" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="5 9 10" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="6 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7 9 10" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tr-type G" evidence="12">
        <location>
            <begin position="326"/>
            <end position="494"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="1"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="11">
        <location>
            <begin position="15"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="11">
        <location>
            <begin position="79"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="11">
        <location>
            <begin position="173"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="11">
        <location>
            <begin position="220"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="335"/>
            <end position="342"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="382"/>
            <end position="386"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="436"/>
            <end position="439"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00020675"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00100"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU000644"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHH14726.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="829" mass="88990" checksum="7E61854EB688263C" modified="2017-03-15" version="1">MSENDGKKTLGLGGSRPSNVKQSFSHGRTKNVVVETKRKRVVVPKPGAAKPTAGGSKPAGSDPSRRPGGISEAEYQRRMKALQAAKEREAEEAAKREAEEKARNEERARRRAEAEAKEAEDREREARAKAKAEEEERKKAEAAAARAKPKSAPAAPNPADIPGEAAVARPSSAPRNKDREQRDTRQPKQQKGRQDEGRRSGKLTLNDALRGGGGHQKSVAAMKRKQERARQKAMGGQVEREKVVREVQLPEAIMVGELANRMSEKVADVVKALMTNGIMATQTQTIDADTAELIVEEFGHTVVRVSDADVEDVIDAVEDKEEDLKPRAPIITIMGHVDHGKTSLLDAIRKTRVTAGEAGGITQHIGAYQVTTEGGQVLTFLDTPGHAAFTSMRSRGAQVTDIVVLVVAADDAVMPQTIEAINHAKAADVPMIVAINKIDREAANPDKVRTDLLQHEVIVEKMSGEVQDVEVSAITGQGLDELLEAIALQAEILELKANPDRAASGAVIEAQLDVGRGPVATVLVQNGTLKQGDIFVVGEQWGKVRALVDDKGGRVKVAGPSVPVEVLGLNGTPEAGDVLNVVDTEAQAREIADYRESAAKDKRAAAGAAVTLDQLMANAKADENVSELPILVKADVQGSAEAIIQAMEKIGNDEVRVRVLHSGVGAITETDVGLAEASGAPVIGFNVRANTPARNSANQKGVEIRYYSVIYDLVDDVKAAASGLLSAEIKENFIGYANIKEVFKVTGVGKVAGCLVTEGVARRSAGVRLLRDNVVIHEGTLKTLKRFKDEVAEVQSGQECGMAFENYDDIRPDDVIEIFEREEVERKLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QLP2</accession>
    <name>A0A1M5QLP2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2196</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15024.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901032.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2196"/>
    <dbReference type="EnsemblBacteria" id="SHH15024">
        <property type="protein sequence ID" value="SHH15024"/>
        <property type="gene ID" value="SAMN05444003_2196"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013216">
        <property type="entry name" value="Methyltransf_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08241">
        <property type="entry name" value="Methyltransf_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransf_11" evidence="1">
        <location>
            <begin position="68"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH15024.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="275" mass="30168" checksum="9BBC5D24F5165B15" modified="2017-03-15" version="1">MTTNRPDLFDPNALAKNRARAKCAPVDFLREAAIDDVQERLNEVNRSFNSVAVVTPRPNLWDSFQEAATFVADDEILQLEETAFDLVIHDLCLHWSNDPVGQIVQSRRALKPDGLFIGTLFGGQTLNELRSCLAQAEAEITGGLSARIAPMAEIRDLGALLQRAGLALPVADGTPFNVSYASPFDLMKELRQMGEGNCITQRAKHFSKRAIFLRATQIYAETFGTENGRVTATFEIITLTGWAPDAGQQQPLRPGSAKNRLADALGAVETKLKPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QMW7</accession>
    <name>A0A1M5QMW7_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Heat-inducible transcription repressor HrcA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">hrcA</name>
        <name evidence="7" type="ORF">SAMN05444003_2216</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the HrcA family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH15444.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901069.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2216"/>
    <dbReference type="EnsemblBacteria" id="SHH15444">
        <property type="protein sequence ID" value="SHH15444"/>
        <property type="gene ID" value="SAMN05444003_2216"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00081">
        <property type="entry name" value="HrcA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002571">
        <property type="entry name" value="HrcA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021153">
        <property type="entry name" value="HrcA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023120">
        <property type="entry name" value="WHTH_transcript_rep_HrcA_IDD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34824">
        <property type="entry name" value="PTHR34824"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01628">
        <property type="entry name" value="HrcA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005485">
        <property type="entry name" value="HrcA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00331">
        <property type="entry name" value="hrcA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 5" id="KW-0678">Repressor</keyword>
    <keyword evidence="3 5" id="KW-0346">Stress response</keyword>
    <keyword evidence="4 5" id="KW-0804">Transcription</keyword>
    <keyword evidence="2 5" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HrcA" evidence="6">
        <location>
            <begin position="115"/>
            <end position="335"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01628"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH15444.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="354" mass="38850" checksum="DA361D0E9C557BD5" modified="2017-03-15" version="1">MSDQTPNIEDMNDRSREVFRRVVEGYLETGDPVGSRTLTRTLSENVSAATIRNVMQDLEYLGLLDSPHVSAGRIPTQLGLRMFVDGLLEVGDLSGEDRRKIDQTLTDGEDDVTALLDRVGSALSGVTQGASLVLTPKHEAPIKHIEFVSLAADRALVVLVFADGQVENRIFTPPAGQTPSSMREAANFINAIAEGQTLSSLGGIISREIQQRRQEIDNLAATLVESGMALWENEGETNERLIVRGRGNLLTENESESDLERIRVLFDDLERKRDIAKFLDLTEEGEGVRIFIGSENQLFSLSGSSLVVSPYMNADRKIIGAVGVIGPTRLNYGRIVPIVNYTAQRIGKIITDRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QPQ6</accession>
    <name>A0A1M5QPQ6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein SCO1/2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2248</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the SCO1/2 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16074.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901121.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2248"/>
    <dbReference type="EnsemblBacteria" id="SHH16074">
        <property type="protein sequence ID" value="SHH16074"/>
        <property type="gene ID" value="SAMN05444003_2248"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd02968">
        <property type="entry name" value="SCO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003782">
        <property type="entry name" value="SCO1/SenC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12151">
        <property type="entry name" value="PTHR12151"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02630">
        <property type="entry name" value="SCO1-SenC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010996"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH16074.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="200" mass="21458" checksum="37DD953EBDF80807" modified="2017-03-15" version="1">MDKKIAIISATALGALLLGSVAFILRGSAYASACSASVVAGGAIGGPFTLVDESGVEVTDQDVIDAPSLIYFGYTFCPDFCPLDAQRNAVTSDILADQGLDLNTVFITIDPARDTPEVLAEYTDNFHPDMVGLTGSDEQIKAAANEYKVVYSRADDDPEFYLMNHSVFSYFVTPEDGFVDFFKNDDTPEAVAERIACHIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QQV3</accession>
    <name>A0A1M5QQV3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">YCII domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2257</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the YciI family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH16231.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901131.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2257"/>
    <dbReference type="EnsemblBacteria" id="SHH16231">
        <property type="protein sequence ID" value="SHH16231"/>
        <property type="gene ID" value="SAMN05444003_2257"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005545">
        <property type="entry name" value="YCII"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03795">
        <property type="entry name" value="YCII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="YCII" evidence="2">
        <location>
            <begin position="1"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007689"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH16231.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="90" mass="9789" checksum="C9465D1750F25FC1" modified="2017-03-15" version="1">MLVAVITTDKDGALQTRLDNRDAHLTYIKETGVIAMAGPFLDTDGAMCGSLIVLDVDSVDAAESWAEDDPYNKASLFSDVRIQEWKKVVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QTI9</accession>
    <name>A0A1M5QTI9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">YHS domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2305</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901203.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH17221">
        <property type="protein sequence ID" value="SHH17221"/>
        <property type="gene ID" value="SAMN05444003_2305"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012928920" evidence="1">
        <location>
            <begin position="24"/>
            <end position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH17221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="156" mass="16808" checksum="A1470A68E96C9F68" modified="2017-03-15" version="1">MKPIKSILTGVALTVAVATQSLAAGVELNASSTGLALQGYDPVAYFTVGEATPGNWTITSSYNDATYRFASEEHKAAFDADPEAYLPQYGGYCAFGAAMGFKFDGDPNQWKVVDGELFLNISADIQERWLEDVPGFIQLADTNWPAIEDKDPASLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QTK2</accession>
    <name>A0A1M5QTK2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2308</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17288.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901209.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2308"/>
    <dbReference type="EnsemblBacteria" id="SHH17288">
        <property type="protein sequence ID" value="SHH17288"/>
        <property type="gene ID" value="SAMN05444003_2308"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004360">
        <property type="entry name" value="Glyas_Fos-R_dOase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00903">
        <property type="entry name" value="Glyoxalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="4"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH17288.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="138" mass="15834" checksum="A6BFA998B7A87F0C" modified="2017-03-15" version="1">MKLEFHHINFVSKDVDGMHDFYTNVLGMDDIPMESFPRTEAEDGKGFDGKIRFATDNTMQMHLAERDLTVAFRNGHTINPVDQGHIAFRTDDLAAFLKILDDRGIPYSDYGNAFSKEWHQVFFQDPEGNVIEVHQKVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QWX3</accession>
    <name>A0A1M5QWX3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Methylthioribose-1-phosphate isomerase</fullName>
            <shortName evidence="2">M1Pi</shortName>
            <shortName evidence="2">MTR-1-P isomerase</shortName>
            <ecNumber evidence="2">5.3.1.23</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">S-methyl-5-thioribose-1-phosphate isomerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">mtnA</name>
        <name evidence="3" type="ORF">SAMN05444003_2343</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>S-methyl-5-thio-alpha-D-ribose 1-phosphate = S-methyl-5-thio-D-ribulose 1-phosphate</text>
            <dbReference type="Rhea" id="RHEA:19989"/>
            <dbReference type="ChEBI" id="CHEBI:58533"/>
            <dbReference type="ChEBI" id="CHEBI:58548"/>
            <dbReference type="EC" id="5.3.1.23"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-acid biosynthesis; L-methionine biosynthesis via salvage pathway; L-methionine from S-methyl-5-thio-alpha-D-ribose 1-phosphate: step 1/6.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the EIF-2B alpha/beta/delta subunits family. MtnA subfamily.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.23" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH18063.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901270.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2343"/>
    <dbReference type="EnsemblBacteria" id="SHH18063">
        <property type="protein sequence ID" value="SHH18063"/>
        <property type="gene ID" value="SAMN05444003_2343"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00904">
        <property type="reaction ID" value="UER00874"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046523">
        <property type="term" value="F:S-methyl-5-thioribose-1-phosphate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019509">
        <property type="term" value="P:L-methionine salvage from methylthioadenosine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019284">
        <property type="term" value="P:L-methionine salvage from S-adenosylmethionine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10470">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01678">
        <property type="entry name" value="Salvage_MtnA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000649">
        <property type="entry name" value="IF-2B-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005251">
        <property type="entry name" value="IF-M1Pi"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042529">
        <property type="entry name" value="IF_2B-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011559">
        <property type="entry name" value="Initiation_fac_2B_a/b/d"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027363">
        <property type="entry name" value="M1Pi_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037171">
        <property type="entry name" value="NagB/RpiA_transferase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01008">
        <property type="entry name" value="IF-2B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100950">
        <property type="entry name" value="SSF100950"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00524">
        <property type="entry name" value="eIF-2B_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00512">
        <property type="entry name" value="salvage_mtnA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="1 2 3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="2" id="KW-0486">Methionine biosynthesis</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="2">
        <location>
            <begin position="53"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="2">
        <location>
            <begin position="253"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="2">
        <location>
            <position position="243"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="90"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="203"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="2">
        <location>
            <position position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01678"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH18063.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="365" mass="39820" checksum="8016F851890A2C86" modified="2017-03-15" version="1">MKVDGVHYRSLWWNESDAALEIIDQRWLPHEFVTQQLGSLQDYATAIYELRVRGAPLIGATAAYGVAFAMQQEPTDRAFEEAYKVFHATRPTAINLKWALDRARAVVIPLAEAERFPAALQFAHDLADADVETNRMIGVHGLEIIREIAAGKPAGEPVNLLTHCNAGWIATVDWGTATSPMYHAHDAGISIHTWVDETRPRNQGSLTSWELGSHGIPHTYIVDNAGGHLMQHGQVDMVIVGTDRTTRAGDVCNKIGTYLKALAAKANGVPFYVALPSSTIDWTVRDGRKEIPIEERDGREISHIFWGKNAVGEVTEVQITPDGVQVANPAFDVTPAGLVTGLITERGVCEASEEALAAMFPDLAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R051</accession>
    <name>A0A1M5R051_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glutathione S-transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2429</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19755.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901397.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2429"/>
    <dbReference type="EnsemblBacteria" id="SHH19755">
        <property type="protein sequence ID" value="SHH19755"/>
        <property type="gene ID" value="SAMN05444003_2429"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006749">
        <property type="term" value="P:glutathione metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010987">
        <property type="entry name" value="Glutathione-S-Trfase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036282">
        <property type="entry name" value="Glutathione-S-Trfase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040079">
        <property type="entry name" value="Glutathione_S-Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004045">
        <property type="entry name" value="Glutathione_S-Trfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13417">
        <property type="entry name" value="GST_N_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00019">
        <property type="entry name" value="Glutathione_Transferase_(cytos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47616">
        <property type="entry name" value="SSF47616"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50405">
        <property type="entry name" value="GST_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50404">
        <property type="entry name" value="GST_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GST N-terminal" evidence="1">
        <location>
            <begin position="4"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="domain" description="GST C-terminal" evidence="2">
        <location>
            <begin position="83"/>
            <end position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH19755.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="214" mass="24681" checksum="4EED812471BB6588" modified="2017-03-15" version="1">MTETHPIFWSFRRCPYAMRARLAVQSSGVQVELREILLKEKPEAFLQTSASATVPAVKDGDLILDESFDVMRWALGKSDPKGWLDMPQGWEAWIEECDGPFKAALDHTKYAVRYPDRDEAEEREKASVFLRKLETRLEGQTFLFGDRATLADMAILPFVRQFANTDRAWFDAQDWPNLIRWLDAFLDSAAFAGIMSKYKPWVPDQEPTLFPNQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R0D9</accession>
    <name>A0A1M5R0D9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DNA-binding protein HU-beta</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2417</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial histone-like protein family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH19500.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901517.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2417"/>
    <dbReference type="EnsemblBacteria" id="SHH19500">
        <property type="protein sequence ID" value="SHH19500"/>
        <property type="gene ID" value="SAMN05444003_2417"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030527">
        <property type="term" value="F:structural constituent of chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.520.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000119">
        <property type="entry name" value="Hist_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010992">
        <property type="entry name" value="IHF-like_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33175">
        <property type="entry name" value="PTHR33175"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00216">
        <property type="entry name" value="Bac_DNA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01727">
        <property type="entry name" value="DNABINDINGHU"/>
    </dbReference>
    <dbReference type="SMART" id="SM00411">
        <property type="entry name" value="BHL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47729">
        <property type="entry name" value="SSF47729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003939"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH19500.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="95" mass="10029" checksum="D0ABBF5D1C82645C" modified="2017-03-15" version="1">MAKPMTKAQLVAALAEESGMDKKGAATALDSIVSIITREVSGGGAVTLPGVGKIYCRERPERMVRNPATGEQIKKDADKVVKMTIAKALKDSVND</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R101</accession>
    <name>A0A1M5R101_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Tripartite-type tricarboxylate transporter, receptor component TctC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2445</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH20055.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901527.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000003.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2445"/>
    <dbReference type="EnsemblBacteria" id="SHH20055">
        <property type="protein sequence ID" value="SHH20055"/>
        <property type="gene ID" value="SAMN05444003_2445"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0675">Receptor</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012183641" evidence="2">
        <location>
            <begin position="19"/>
            <end position="325"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH20055.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="325" mass="35434" checksum="5B3C5B05A61CF12C" modified="2017-03-15" version="1">MKFTKRHFLGLAASTAMAAMPMAALADGWEPKRPIDFTIMAGPGGGADQIARFVQSVVETNDMTNRPLIPTNRGGGSGAEALLHMKDARDADHTLMVTLNSFYTTPIRQEGLGVDIETFTPITMMGVDPFVLWVHKDSGITTFEQYIETVKEMNGEFVMGGTGSGQEDSIVIAFMSGVYDLDIKYIPYDGGGAVAKDLAGQQIMATVNNPAEAKGFYEAGEFVPLLAFSDERLDAYPDVPTMKEKGHDFSYYNQRAIVGAPGMSDEAAAYYREVFGAVYEGADWQNYLTSESLAPLPMDEAQTREYWAIQVENHRDLLGAIAGQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5R314</accession>
    <name>A0A1M5R314_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Alpha/beta hydrolase fold</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2451</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH20173.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2451"/>
    <dbReference type="EnsemblBacteria" id="SHH20173">
        <property type="protein sequence ID" value="SHH20173"/>
        <property type="gene ID" value="SAMN05444003_2451"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5011979699" evidence="1">
        <location>
            <begin position="27"/>
            <end position="679"/>
        </location>
    </feature>
    <feature type="domain" description="AB hydrolase-1" evidence="2">
        <location>
            <begin position="90"/>
            <end position="278"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH20173.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="679" mass="73786" checksum="8570B9327F160D7F" modified="2017-03-15" version="1">MVQFNLRLFILNLAATVLLGSLAVKATSADALFSPMPCPLQLPWDEEVEGETYDCGVVLVPENHNVPDGRHIELTFLRLKAMSLSAEPDPLVYLSGGPGGSAISEITSIAPLYQNMTSIRQRRDVIFLDQRGTGHSTLIACGPMSAAVGIAAETMDIGDVSIQELETMNAGEGSIEFVLSLCAAGYAGESIDLGQFNSISSANDIALLTRALGYVGQYNLYGTSYGTRLALVAMRETPDRIRSVILDGAVSPATAGTAETSTKVRYAYDTIFDLCMADKFCSDNYPDIRQRFIDLLEKLSSDPVTLDPPLIPNNMVRARFGSIEQITPKFFAELAMLNNGMARGGYATLVPMIIEAIELKDTTLLRKILGGGPIEEEVVVHAPLSFENAIEPDDVFFAPSLDLIMKFAEDHNDLESPSLSKNWVQSVIVDLRTKLINGEPQPVIIKSLVDLALLPIHGVDAERLIEFSDKNLSVEAAGTANSLVQAMDETDLRLTSWSIGDIAAQMGGFGERDGSPGMAVAMLMGINCIEEVGFTPTSFVEELLSNTPYPGLELRGVKDYELARLVCDFWPRPFEAGDIMYPVESDIATLIYTQGLDTQTVVKFGEDVATLLPNSFYHEWPTEGHVISGRSPDRCPGDIAAAFLDHPDSEPNMTCADNPYYTLPFDLVEGAYKNEASDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RA97</accession>
    <name>A0A1M5RA97_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Ribonuclease HII</fullName>
            <shortName evidence="11">RNase HII</shortName>
            <ecNumber evidence="11">3.1.26.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">rnhB</name>
        <name evidence="14" type="ORF">SAMN05444003_2473</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 11 12">Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 11 12">
            <text>Endonucleolytic cleavage to 5'-phosphomonoester.</text>
            <dbReference type="EC" id="3.1.26.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <cofactor evidence="11">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="11">Manganese or magnesium. Binds 1 divalent metal ion per monomer in the absence of substrate. May bind a second metal ion after substrate binding.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 11 12">Belongs to the RNase HII family.</text>
    </comment>
    <dbReference type="EC" id="3.1.26.4" evidence="11"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2473"/>
    <dbReference type="EnsemblBacteria" id="SHH23245">
        <property type="protein sequence ID" value="SHH23245"/>
        <property type="gene ID" value="SAMN05444003_2473"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030145">
        <property type="term" value="F:manganese ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006401">
        <property type="term" value="P:RNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07182">
        <property type="entry name" value="RNase_HII_bacteria_HII_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00052_B">
        <property type="entry name" value="RNase_HII_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022898">
        <property type="entry name" value="RNase_HII"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001352">
        <property type="entry name" value="RNase_HII/HIII"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024567">
        <property type="entry name" value="RNase_HII/HIII_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10954">
        <property type="entry name" value="PTHR10954"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10954:SF18">
        <property type="entry name" value="PTHR10954:SF18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01351">
        <property type="entry name" value="RNase_HII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="8 11 12" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="9 11 12" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="10 11" id="KW-0464">Manganese</keyword>
    <keyword evidence="7 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 11 12" id="KW-0540">Nuclease</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase_HII" evidence="13">
        <location>
            <begin position="43"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="46"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="47"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="137"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007383"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU003515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF01351"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="SHH23245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="232" mass="25154" checksum="98FA11F409C1B11D" modified="2017-03-15" version="1">MAFCPFFLSCVWPLNLVTKGMAATTPTFDYEYAAQQRGFLRIAGLDEVGRGPLAGPVVAAAAVLDPDNIPDGLNDSKKLSAKRRDVLFDELMDCADISIAEASVAEIDEHNILRASHIAMVRALGGLKSPAEFVLIDGNMIPRGLNTPSATLVKGDAKSLSIAAASIVAKVWRDRLMVDLAQQHPGYGWERNAGYPTKEHKAGLKSHGVTPHHRRSFAPVHNILYQDKIVTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RB75</accession>
    <name>A0A1M5RB75_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Crotonobetainyl-CoA:carnitine CoA-transferase CaiB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2481</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23428.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901554.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2481"/>
    <dbReference type="EnsemblBacteria" id="SHH23428">
        <property type="protein sequence ID" value="SHH23428"/>
        <property type="gene ID" value="SAMN05444003_2481"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003673">
        <property type="entry name" value="CoA-Trfase_fam_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044855">
        <property type="entry name" value="CoA-Trfase_III_dom3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023606">
        <property type="entry name" value="CoA-Trfase_III_dom_1_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02515">
        <property type="entry name" value="CoA_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89796">
        <property type="entry name" value="SSF89796"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH23428.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="373" mass="40230" checksum="DDF5C86AAEC678EB" modified="2017-03-15" version="1">MRPLAGLKVVELARILAGPWAGQTLSDLGAEVIKVEAPTGDDTRQWGPPFIERDGDTSAAYFHSCNRGKASVAIDFRTDEGKAQLIELIKDADILIENFKVGGLKKYGLDYDSLAAENPRLIYCSITGFGQDGPYAYRAGYDYIIQGMSGLMSVTGEPDGQPQKVGVAVTDIFSGLYAATSILAAVQQRNATGKGQHIDVALFDVATAVMANQAMNYLATDVAPKRLGNAHPNIVPYQVFDCKDGFAIVAAGNDGQYRAFCDLLGVNDLGTDDRFATNPMRLENRDALTDLLTVETQKITRDDLLSRCEANGVPAGPINDMADVFADPQIQHRGLRLELDGVPSVAFPVKFSDADVSREKASPKIGEDQHLLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RBH4</accession>
    <name>A0A1M5RBH4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Protein-disulfide isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2480</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">May be required for disulfide bond formation in some proteins.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the thioredoxin family. DsbA subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23409.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901552.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2480"/>
    <dbReference type="EnsemblBacteria" id="SHH23409">
        <property type="protein sequence ID" value="SHH23409"/>
        <property type="gene ID" value="SAMN05444003_2480"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012336">
        <property type="entry name" value="Thioredoxin-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13462">
        <property type="entry name" value="Thioredoxin_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin" evidence="3">
        <location>
            <begin position="38"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003565"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005791"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH23409.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="221" mass="24058" checksum="A75EBE0BF7389FDA" modified="2017-03-15" version="1">MDRRTLLGTGAAAIALGGGFLWTQRGQQGAGSNLLVGMANAQTAEAVEIPDMVLGSADAPVEVIEYASYTCPHCASFHANQFKQLKENYIDTGKVRFVYREVYFDRFGLWASMVARCGEGARFFEISDMIYEKQREWTASGDPATIADELQKIGKIAGLDQATLDACMQDGAFAQSLVGWFQENADRDGINSTPSFLIDGEKYANMSYADFASVLDGKING</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RBL6</accession>
    <name>A0A1M5RBL6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 13">Tetraacyldisaccharide 4'-kinase</fullName>
            <ecNumber evidence="3 13">2.7.1.130</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="12 13">Lipid A 4'-kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="primary">lpxK</name>
        <name evidence="14" type="ORF">SAMN05444003_2482</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14 15">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 13">Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 13">Glycolipid biosynthesis; lipid IV(A) biosynthesis; lipid IV(A) from (3R)-3-hydroxytetradecanoyl-[acyl-carrier-protein] and UDP-N-acetyl-alpha-D-glucosamine: step 6/6.</text>
    </comment>
    <comment type="similarity">
        <text evidence="13">Belongs to the LpxK family.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.130" evidence="3 13"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23449.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901556.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2482"/>
    <dbReference type="EnsemblBacteria" id="SHH23449">
        <property type="protein sequence ID" value="SHH23449"/>
        <property type="gene ID" value="SAMN05444003_2482"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00359">
        <property type="reaction ID" value="UER00482"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009029">
        <property type="term" value="F:tetraacyldisaccharide 4'-kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009245">
        <property type="term" value="P:lipid A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00409">
        <property type="entry name" value="LpxK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003758">
        <property type="entry name" value="LpxK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42724">
        <property type="entry name" value="PTHR42724"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02606">
        <property type="entry name" value="LpxK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00682">
        <property type="entry name" value="lpxK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 13" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9 13 14" id="KW-0418">Kinase</keyword>
    <keyword evidence="6 13" id="KW-0441">Lipid A biosynthesis</keyword>
    <keyword evidence="5 13" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="11 13" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="8 13" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 13" id="KW-0808">Transferase</keyword>
    <feature type="binding site" evidence="13">
        <location>
            <begin position="52"/>
            <end position="59"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004870"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012071"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00016436"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00029757"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="SHH23449.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="319" mass="34004" checksum="300E576432DC484B" modified="2017-03-15" version="1">MREPNFWYRAPGWQSALLAPLGSIYAALTSRRVAQQPQYTAQVPVICIGNINAGGTGKTPTAIAIAQHLQKRGHVVHIVSRGYGGSLAGPVLVKEGTHSADQTGDEPLLLSAFAPTWVAKDRALGVQAAVEAGATAILLDDGFQNPTVAKAISIVVVDATRGFGNKRVIPAGPLREPIGAGLRRADVVLTIGKGEIDGLEGKPVAKGHLIPLQTGMTWTGLRVLAFAGIGNPSKFFATLRELGVEIIKSEPLDDHQPLTPALMRRLETEAKAQVAQLVTTEKDAVRLPDDFRSKVLTVPIRLEVEDWSSLDSAFQQEGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RCB5</accession>
    <name>A0A1M5RCB5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative ABC transport system ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2509</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH23987.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2509"/>
    <dbReference type="EnsemblBacteria" id="SHH23987">
        <property type="protein sequence ID" value="SHH23987"/>
        <property type="gene ID" value="SAMN05444003_2509"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03255">
        <property type="entry name" value="ABC_MJ0796_LolCDE_FtsE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017911">
        <property type="entry name" value="MacB_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025662">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00675">
        <property type="entry name" value="SIGMA54_INTERACT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="6"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="40"/>
            <end position="47"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH23987.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="230" mass="24661" checksum="9A5068FA57CC4148" modified="2017-03-15" version="1">MTETVLQLKDVQFDWTKRAEFSLSVPDFAMRKGETVLLLGESGSGKSTLLSLICGTLVPQAGSIKVADADMTTLSASARDRFRAERIGVIFQQFNLLPFGTVADNIQLPLRFAPERRQKAGDVGNATQNLLDALGLSRSVIIAKASTLSVGQQQRVAVARALIGQPSLIIADEPTSALDAATQSAFLDVLFEQVAASGASLLMVSHDARLADRFDRTVTMDDLTKPKVAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RD77</accession>
    <name>A0A1M5RD77_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2522</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24254.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901617.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2522"/>
    <dbReference type="EnsemblBacteria" id="SHH24254">
        <property type="protein sequence ID" value="SHH24254"/>
        <property type="gene ID" value="SAMN05444003_2522"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012635469" evidence="1">
        <location>
            <begin position="22"/>
            <end position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH24254.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="121" mass="13267" checksum="F8B8CC07E8570BE5" modified="2017-03-15" version="1">MKPTLTSLTFTAALAATPALADYRPITDQAEFLGFLATKNLSNRLYGLTLTVSPDGTITGRAAGYDVTGTWAWQDGYFCRQMNWGGQDIPYNCQLVEIRNGNEMRFTVDQGAGDSASFKLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RDJ6</accession>
    <name>A0A1M5RDJ6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Zinc protease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">SAMN05444003_2529</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7 8">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 3">Belongs to the peptidase M16 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24395.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901630.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2529"/>
    <dbReference type="EnsemblBacteria" id="SHH24395">
        <property type="protein sequence ID" value="SHH24395"/>
        <property type="gene ID" value="SAMN05444003_2529"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011249">
        <property type="entry name" value="Metalloenz_LuxS/M16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011765">
        <property type="entry name" value="Pept_M16_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001431">
        <property type="entry name" value="Pept_M16_Zn_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007863">
        <property type="entry name" value="Peptidase_M16_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00675">
        <property type="entry name" value="Peptidase_M16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05193">
        <property type="entry name" value="Peptidase_M16_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63411">
        <property type="entry name" value="SSF63411"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00143">
        <property type="entry name" value="INSULINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0645">Protease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012928938" evidence="4">
        <location>
            <begin position="20"/>
            <end position="443"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M16" evidence="5">
        <location>
            <begin position="33"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M16_C" evidence="6">
        <location>
            <begin position="187"/>
            <end position="371"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU004447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00675"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF05193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="SHH24395.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="443" mass="48879" checksum="572115C1809ACFA6" modified="2017-03-15" version="1">MRRLLAALALSAAPLTAAAEEVTTFDLDNGMEVVVIEDHRAPVVVHMLWYRVGSADEPEGVSGIAHFLEHLMFKGTDMLEAGEFSATVAANGGSDNAFTSYDYTAYFQRVAADRLELMMEMEANRMNNLQITDADVIPERGVILEERNQRTENSAGALANEQFRAALYQNHRYGVPIIGWQHEMEQLDLQDVLDFYDLYYAPNNAILVVAGDVEPDEVKELAEKYYGVLPAEANLPERERPSEPPHRAERRLTYVDQRVSQPYLTRTYLAPERDPGAQEEAAALVYLAELLGGSPFTSALGVALQFDTDTAVYTNAGYSGSSLDTSTFGLSIVPSEGVTLSEAEAAMDQVIADFMEAPIDPERLESIRTQLRASEIYAKDNVQGLARRYGAALSQSLTVEDVQAWPDILQAVTEEDIKAVAEKVLDRKRAVTGWVVATEEDAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RHR0</accession>
    <name>A0A1M5RHR0_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Chitooligosaccharide deacetylase</fullName>
            <ecNumber evidence="5">4.1.1.97</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">Nodulation protein B</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">SAMN05444003_2595</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>5-hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate + H(+) = (S)-allantoin + CO2</text>
            <dbReference type="Rhea" id="RHEA:26301"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15678"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:58639"/>
            <dbReference type="EC" id="4.1.1.97"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Purine metabolism; urate degradation; (S)-allantoin from urate: step 3/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the polysaccharide deacetylase family.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.97" evidence="5"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901728.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2595"/>
    <dbReference type="EnsemblBacteria" id="SHH25771">
        <property type="protein sequence ID" value="SHH25771"/>
        <property type="gene ID" value="SAMN05444003_2595"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00394">
        <property type="reaction ID" value="UER00652"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016831">
        <property type="term" value="F:carboxy-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016810">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000255">
        <property type="term" value="P:allantoin metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006144">
        <property type="term" value="P:purine nucleobase metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019628">
        <property type="term" value="P:urate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd10977">
        <property type="entry name" value="CE4_PuuE_SpCDA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3330.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011330">
        <property type="entry name" value="Glyco_hydro/deAcase_b/a-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002509">
        <property type="entry name" value="NODB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018020">
        <property type="entry name" value="OHCU_decarboxylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017580">
        <property type="entry name" value="OHCU_decarboxylase-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036778">
        <property type="entry name" value="OHCU_decarboxylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017625">
        <property type="entry name" value="PuuE/SpCDA1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09349">
        <property type="entry name" value="OHCU_decarbox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01522">
        <property type="entry name" value="Polysacc_deac_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF158694">
        <property type="entry name" value="SSF158694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88713">
        <property type="entry name" value="SSF88713"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03164">
        <property type="entry name" value="UHCUDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03212">
        <property type="entry name" value="uraD_N-term-dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51677">
        <property type="entry name" value="NODB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0210">Decarboxylase</keyword>
    <keyword evidence="10" id="KW-0456">Lyase</keyword>
    <keyword evidence="7" id="KW-0536">Nodulation</keyword>
    <keyword evidence="8" id="KW-0659">Purine metabolism</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NodB homology" evidence="12">
        <location>
            <begin position="68"/>
            <end position="284"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004754"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010973"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012257"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00020071"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00032976"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHH25771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="469" mass="52885" checksum="D029FAE6F178E8CD" modified="2017-03-15" version="1">MNRYPRDMIGYGANPPDPKWPNGAKIAIQIVLNYEEGGENNILHGDASSEAFLSEIVGAAAWEGQRHWNMESIYEYGSRAGFWRLHRLLKGLPITVYGVATALARSPEQVAAMKAAPWEIASHGLKWIEYKDHSEEDERADMKEAIRLHTEVVGEAPRGWYTGRCSVNTVRLAAETGQFAYVADSYADDLPYWMEFGRRDQLIVPYTLDCNDMRFATPQGFNSGTQFFDYLKASFDALYREGLEGAPKMMSVGLHCRLIGRPGRVEALRQFIEYAQSYDDVWFATREQIAEHWATVNPHKHRVRPSEMSKSMFVDTYGGIFEHSAWIAERAFDGELGFVHDTSAGMHNALARVFRSASDEERLGVLVAHPDLAGKLAAAKRLTAESTSEQASAGLDALTDEERDTFEKANTAYTAKFGFPFIIAVRDHDKASILKQFETRLQNDRDAEFATACRQVERIAEFRLMDILP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RJU3</accession>
    <name>A0A1M5RJU3_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">4-hydroxy-3-methylbut-2-enyl diphosphate reductase</fullName>
            <shortName evidence="5">HMBPP reductase</shortName>
            <ecNumber evidence="5">1.17.7.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">ispH</name>
        <name evidence="6" type="ORF">SAMN05444003_2630</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>H2O + isopentenyl diphosphate + 2 oxidized [2Fe-2S]-[ferredoxin] = (2E)-4-hydroxy-3-methylbut-2-enyl diphosphate + 2 H(+) + 2 reduced [2Fe-2S]-[ferredoxin]</text>
            <dbReference type="Rhea" id="RHEA:24488"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:128753"/>
            <dbReference type="ChEBI" id="CHEBI:128769"/>
            <dbReference type="EC" id="1.17.7.4"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>dimethylallyl diphosphate + H2O + 2 oxidized [2Fe-2S]-[ferredoxin] = (2E)-4-hydroxy-3-methylbut-2-enyl diphosphate + 2 H(+) + 2 reduced [2Fe-2S]-[ferredoxin]</text>
            <dbReference type="Rhea" id="RHEA:24825"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:57623"/>
            <dbReference type="ChEBI" id="CHEBI:128753"/>
            <dbReference type="EC" id="1.17.7.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="5">Binds 1 [4Fe-4S] cluster per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="5">Isoprenoid biosynthesis; dimethylallyl diphosphate biosynthesis; dimethylallyl diphosphate from (2E)-4-hydroxy-3-methylbutenyl diphosphate: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="5">Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-phosphate: step 6/6.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the IspH family.</text>
    </comment>
    <dbReference type="EC" id="1.17.7.4" evidence="5"/>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH26535.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901784.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2630"/>
    <dbReference type="EnsemblBacteria" id="SHH26535">
        <property type="protein sequence ID" value="SHH26535"/>
        <property type="gene ID" value="SAMN05444003_2630"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00056">
        <property type="reaction ID" value="UER00097"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00059">
        <property type="reaction ID" value="UER00105"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051745">
        <property type="term" value="F:4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050992">
        <property type="term" value="P:dimethylallyl diphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019288">
        <property type="term" value="P:isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016114">
        <property type="term" value="P:terpenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd13944">
        <property type="entry name" value="lytB_ispH"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="LytB/IspH"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="LYTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00216">
        <property type="entry name" value="ispH_lytB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 5" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="3 5" id="KW-0408">Iron</keyword>
    <keyword evidence="4 5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5" id="KW-0414">Isoprene biosynthesis</keyword>
    <keyword evidence="2 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="228"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="5">
        <location>
            <position position="131"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="17"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
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    <feature type="binding site" evidence="5">
        <location>
            <position position="46"/>
        </location>
        <ligand>
            <name>substrate</name>
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        <location>
            <position position="79"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="101"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="129"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
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        <location>
            <position position="170"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="200"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="273"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
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        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH26535.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="316" mass="34473" checksum="8B62F5EC64FAF727" modified="2017-03-15" version="1">MTKQSLTLYLAAPRGFCAGVDRAIKIVEMALEKWGAPVYVRHEIVHNKFVVDGLRDKGAVFVEELLECPDDRPVIFSAHGVPKAVPAAAAKREMIYVDATCPLVSKVHIEAQRHSDNGLQMIMIGHEGHPETIGTMGQLPDGEVLLVETVEDVATVEVRDPERLAFVTQTTLSVDDTIDIVKALQERFPGIVGPHKEDICYATTNRQEAVKAIAPKCDAIMVVGAPNSSNSKRLVEVGARAGCDYAQLVQRATDIDWRALNGIKSIGITAGASAPEVLINEVIDAFKDRYDTTVEIVETAVENVEFKVPRVLREPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RYA9</accession>
    <name>A0A1M5RYA9_9RHOB</name>
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        <submittedName>
            <fullName evidence="3">EamA-like transporter family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2758</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
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        <lineage>
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    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
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                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
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        <property type="molecule type" value="Genomic_DNA"/>
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    <dbReference type="STRING" id="1508389.SAMN05444003_2758"/>
    <dbReference type="EnsemblBacteria" id="SHH31171">
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        <property type="gene ID" value="SAMN05444003_2758"/>
    </dbReference>
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        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
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    </dbReference>
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        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="38"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="67"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="94"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="122"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="157"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="182"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="214"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="247"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="272"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="7"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="154"/>
            <end position="289"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH31171.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="302" mass="32401" checksum="04F845221D993159" modified="2017-03-15" version="1">MRPSTAGHLAMLLFSALVAGSFALGVLAANEIAPEALSAVRFIIASVLLGVLCWWSGGIPKSALRAIWRYFLLGGVFSVYFVLMFEGLKTVDAVSAATVFTLTPILSAVFGWLLLRQVMSARIAVALGVGGIGAIWVIFDADWVAIANFEIGRGEVIYFWGCVAHAVYTPLVAKLNRGESPVVFSFGTLLGGTFVLVLWAMPAALQTDWVNLPSIVWVTIFYTAIFSSAATFTLLQFATLRLPSSKVMAYTYLTPSWVLLWTLAMGTGTPDPMVLIGVGLTVIALLLLLRNDSSANSYSESS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S0C2</accession>
    <name>A0A1M5S0C2_9RHOB</name>
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        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2797</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
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    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
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                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
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    </dbReference>
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    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
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    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH32072.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="374" mass="43362" checksum="121C24C139EFC6B1" modified="2017-03-15" version="1">MTKTDLSQDHFQLEDTRVTRRYFGKFEKITDHLTRVAATMEAERRLARRDIEALAGYLVGLNYTFKALAHKYHFSGRFAHAGQLTFDRVESGFPVYQELLEMANDAQQAQAHLASMPSVEELKEQMVRTIVGDQEIPTKLQFALSQRLYYEELLKEKLFWARNDPKIVWQGNKHDRRRTFQIHWAVYDSQVNLPTIYLMDIEDTGRTGLPKDEKRWPEVQAHLMAQSVGGLKLLTIAKGFDEDFDDLHPVRLRRFHIGPMYSHAFTRQRGPLREVLEQAKSPVGEDWALVWTEEDLVSERAERVKSGWFGTVERQIFTLDPFAGQGADTGTTRMERSLIMPERPYQALAERNPPGFRDVRKFVVGDGGRVLSYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S3N3</accession>
    <name>A0A1M5S3N3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2830</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
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            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH32898.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902139.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2830"/>
    <dbReference type="EnsemblBacteria" id="SHH32898">
        <property type="protein sequence ID" value="SHH32898"/>
        <property type="gene ID" value="SAMN05444003_2830"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010389">
        <property type="entry name" value="Urate_ox_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06181">
        <property type="entry name" value="Urate_ox_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="87"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="117"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="151"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="177"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="253"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="283"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="domain" description="Urate_ox_N" evidence="2">
        <location>
            <begin position="6"/>
            <end position="298"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF06181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH32898.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="414" mass="46355" checksum="F07632C5E31FF25D" modified="2017-03-15" version="1">MFDLLVLWDWVSFSVRWLHVITAMAWIGASFYFIALDLMLKPADDMPEGASGEEWEVHGGGFYHTTKYLVAPARLPEHLTWHKWQSYTTWLSGAALLAIIYWIGGEIYLLDPTKADLALWQGILISAASISVGWIIYDLMCRSKLGDYPNAMMLALFVVIVAMSWGLNQVFTGRAALLHLGAFTATIMTANVFFVIMPNQRIVVADLKAGRVPDAKYGKIAKLRSTHNNYLTLPVVFLMLSNHYPLAFGTQNAWIIASLIFLTGVTIRHYFNTMHSTGRGPHWTWAVTVVLMIVIAWLSTASMRGETWEEASSRDLTPYETRFAEATGFDDAYTVVLGNCSMCHAREPIFSDAMLWAPKGVLLETKADVARHARDIYIHAGVSHAMPPPNAIETMTAENRQTIIAWYRNAADAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S4H6</accession>
    <name>A0A1M5S4H6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2851</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33386.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH33386">
        <property type="protein sequence ID" value="SHH33386"/>
        <property type="gene ID" value="SAMN05444003_2851"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH33386.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="61" mass="6662" checksum="DB16416E1FAA3F3C" modified="2017-03-15" version="1">MPAQTLPEMSLPKVSKDIYYDTRVSEILDDVPKSSGLIAAYAVLTIPFLKVLFSPGRPLPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S4R8</accession>
    <name>A0A1M5S4R8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2860</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33612.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902189.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH33612">
        <property type="protein sequence ID" value="SHH33612"/>
        <property type="gene ID" value="SAMN05444003_2860"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012702928" evidence="1">
        <location>
            <begin position="22"/>
            <end position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH33612.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="236" mass="26135" checksum="597BCDB583B58894" modified="2017-03-15" version="1">MAVFRLSTCAAAVLTSTLGYAEAQDTRPIFSESYSVADALAAYAEIDRRWDEAQAEQQSRFVAFEGDQADFVRSDPILQDVEWPYEECTSVVSLIPPPMPGWGISSDASYVQIPVSDENAEVTYIRFDPSLTSADREFYQTEEYVSIRVVKSVETQQFFEMMYAQEAMRSAMFDLGPFNYPMMKQTDGVVLGDVGVAVTATNPETQKAYLELIVGCAIKSGFISELVDPASLKSVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S5J2</accession>
    <name>A0A1M5S5J2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Acetate CoA-transferase YdiF</fullName>
            <ecNumber evidence="2">2.8.3.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2866</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">CoA transferase having broad substrate specificity for short-chain acyl-CoA thioesters with the activity decreasing when the length of the carboxylic acid chain exceeds four carbons.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>acetate + an acyl-CoA = a carboxylate + acetyl-CoA</text>
            <dbReference type="Rhea" id="RHEA:13381"/>
            <dbReference type="ChEBI" id="CHEBI:29067"/>
            <dbReference type="ChEBI" id="CHEBI:30089"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:58342"/>
            <dbReference type="EC" id="2.8.3.8"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the 3-oxoacid CoA-transferase family.</text>
    </comment>
    <dbReference type="EC" id="2.8.3.8" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902249.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2866"/>
    <dbReference type="EnsemblBacteria" id="SHH33761">
        <property type="protein sequence ID" value="SHH33761"/>
        <property type="gene ID" value="SAMN05444003_2866"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008775">
        <property type="term" value="F:acetate CoA-transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046952">
        <property type="term" value="P:ketone body catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014388">
        <property type="entry name" value="3-oxoacid_CoA-transferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004165">
        <property type="entry name" value="CoA_trans_fam_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037171">
        <property type="entry name" value="NagB/RpiA_transferase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01144">
        <property type="entry name" value="CoA_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000858">
        <property type="entry name" value="SCOT-t"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00882">
        <property type="entry name" value="CoA_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100950">
        <property type="entry name" value="SSF100950"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <feature type="active site" description="5-glutamyl coenzyme A thioester intermediate" evidence="3">
        <location>
            <position position="328"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR000858"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000858-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH33761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="523" mass="55953" checksum="6DAA301463AA3B4B" modified="2017-03-15" version="1">MTKVMAVSDAVAQIPDGATVSVSSSSTLGCPDLVLKAIGDRFEAKGHPREITSLHPIAAGDVYGVKGMDYIAKDGLLKRVLAGSYPSGPSSVEMPEIWKMIVEDRVAAYNVPSGIMFDMHREAAAHRPGVLTHVGLETFVDPIRQGCAMNDKGAAEPIVDRVEFGGETWLHFPNIIPNVAVIRATTADEHGNLTYEHEGAYLGGLEQAICVRNNGGLVIAQVKRVTARGSLRPHDVRVPGHLVDCIVVDPDQKQTTETLYDPAISGEVMRPWDSFALADHGVEKVIARRAASELRCGMTANLGFGISAMVPRVLLEEGHPDAVTWAIEQGAVGGVPLSGFAFGCASNADAFVPSPQQFIYFQGAGFDISFLSFLEVDVEGNVNVSKLGKKPYLTAGCGGFVDITAKAKNIVFSGWFEAGAQIELAEDGIDIKAPGKFTKMVDEVEHVTFSGKRAREQGQNVLYVTERCVIQLTEMGLVATEIMLGVDPQEHIVGPSQGRVQVAENATLMSKSLLTDGPMGLEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5S6M7</accession>
    <name>A0A1M5S6M7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Predicted dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2873</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000005">
        <property type="protein sequence ID" value="SHH33938.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902253.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000005.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2873"/>
    <dbReference type="EnsemblBacteria" id="SHH33938">
        <property type="protein sequence ID" value="SHH33938"/>
        <property type="gene ID" value="SAMN05444003_2873"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004104">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000683">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01408">
        <property type="entry name" value="GFO_IDH_MocA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02894">
        <property type="entry name" value="GFO_IDH_MocA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GFO_IDH_MocA" evidence="1">
        <location>
            <begin position="4"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="domain" description="GFO_IDH_MocA_C" evidence="2">
        <location>
            <begin position="144"/>
            <end position="387"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH33938.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="388" mass="42675" checksum="5CDF807AFCAD3842" modified="2017-03-15" version="1">MKEVRVAVLGAAGWMGRVHTMAYQTFPHFFGESGGTARVTALVGNDPNTMDDLAFRAPGAKLLTDWKVAVNDPEVDLVDICLPDSLHYEVAKAALLAGKHVFCEKPLADTAEQARELADIAKEKGIITRVGHAFPRNPVHDLAKEIIDAGEIGEIKLFKACQHIDIYGDPLAPYMWRADGDLAPTGIIGDTGSHVFSLMDFLVGRVSSLIADSYVVTDKRPKLDGLGYGDGVSEIPDGTEWGNITNPDGTNIMCTFEGGAKGLIDFSRVATGRKFIQTYEVYGTKGSLVYDYDEVNRIRFYSNDDKAGRRGFREIDVGPEHETFAKFLPLPNFALGYNESKIIEVAEVIKSIATNQPMWPTFENGHHICQIVDACMTSSEQKRWVDIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SF69</accession>
    <name>A0A1M5SF69_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Endoglucanase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">SAMN05444003_2940</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9 10">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
        <text evidence="8">Binds 2 divalent metal cations per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the peptidase M42 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37247.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902348.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2940"/>
    <dbReference type="EnsemblBacteria" id="SHH37247">
        <property type="protein sequence ID" value="SHH37247"/>
        <property type="gene ID" value="SAMN05444003_2940"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004177">
        <property type="term" value="F:aminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008007">
        <property type="entry name" value="Peptidase_M42"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023367">
        <property type="entry name" value="Peptidase_M42_dom2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05343">
        <property type="entry name" value="Peptidase_M42"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001123">
        <property type="entry name" value="PepA_GA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="7">
        <location>
            <position position="207"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="64"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="175"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="208"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="230"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="318"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR001123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR001123-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR001123-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="SHH37247.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="344" mass="37088" checksum="3121B794A0595613" modified="2017-03-15" version="1">MNIDLLKRLCETPGVPGHEERVREVIMCEIADLFDEVTTDPMGSLHCVRKADRDGAPKVMLLCHMDEIGFLVSHVDAKGFVYVQPVGGFDARNLFSRRVLVCTDDGDFKGVMNPGGKPVHISTPEERKKIPAVTEFIIDLGMGERAKDVVHVGDYVVMDEPFLDLDEKVVSKALDNRIACWLGVETIKALGSAGRGAEVHVVFTTQEEVGLRGARTSAFKVKPDIGIGIDVTLSCDTPGVPEKDSTTVQGQGFGLHIRDSSFIADKGLVRDIAKLADTKGIPYQRTILAAGGQDGAAAQQAASGARAVGIVVGTRYVHTVTEMIDKTDLQAALNILVAYLEDFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SF92</accession>
    <name>A0A1M5SF92_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Sarcosine oxidase subunit alpha</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_2911</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GcvT family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH36553.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902304.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2911"/>
    <dbReference type="EnsemblBacteria" id="SHH36553">
        <property type="protein sequence ID" value="SHH36553"/>
        <property type="gene ID" value="SAMN05444003_2911"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.440">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042204">
        <property type="entry name" value="2Fe-2S-bd_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028896">
        <property type="entry name" value="GCST/YgfZ/DmdA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013977">
        <property type="entry name" value="GCV_T_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006222">
        <property type="entry name" value="GCV_T_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029043">
        <property type="entry name" value="GcvT/YgfZ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041117">
        <property type="entry name" value="SoxA_A3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027266">
        <property type="entry name" value="TrmE/GcvT_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43757">
        <property type="entry name" value="PTHR43757"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01571">
        <property type="entry name" value="GCV_T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08669">
        <property type="entry name" value="GCV_T_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17806">
        <property type="entry name" value="SO_alpha_A3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101790">
        <property type="entry name" value="SSF101790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SO_alpha_A3" evidence="5">
        <location>
            <begin position="453"/>
            <end position="534"/>
        </location>
    </feature>
    <feature type="domain" description="GCV_T" evidence="3">
        <location>
            <begin position="552"/>
            <end position="813"/>
        </location>
    </feature>
    <feature type="domain" description="GCV_T_C" evidence="4">
        <location>
            <begin position="841"/>
            <end position="922"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF08669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF17806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH36553.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="930" mass="100888" checksum="86ED002347F9EC9B" modified="2017-03-15" version="1">MTTRRLNSGGLIDRSKPISFWFDGKTYEGFEGDTLASALLANGVSIVGRSFKYHRPRGVWSAWVDEPNAIMNIRLNGKEQPNCLATTTYIEEGMAARSVNAFPTAKYDIKGGLDLFHRFLGAGFYYKTFIWPDWHLFEPAIRKMAGLGAVDREVLEDFQSAQNHAKCDVLVVGGGAAGLTAARAAAEAGKDVVLVDDQRVLGGSLYRCGATADIDPDEWVAAQKTAIENAGGRILTHTTAYGVYDHGLVALVQSQGFGRAPALWRMRAGQVIMATGALDRPITFAKNDLPGTMSLNAAGEYLARYGVMAANKPLVMRNNSHASATIENLRAAGSKVEEIDHVDGITNQGRKHTTGLRIGKDQIDADGVLVSGGLTPLVHLWRHAGGKLDWCETRQAFVPKPATDAMIAIGAANGTYDLAQAIEEAEAAGKGTPIDRPSTTYTTTLIDTKPHSKGRQWIDFQHDVTLKDIEVAARENYVSVEHLKRYTTLGMAFDQGKTSNMAGLTAMAALRGKPIPQVGTTTFRPPFVPVPLEIYHGAKTKQLWSPVKRLPLEDKHRDLDAAFCEYGGWLRPGWYGSGDRDATIQKEAKAARDTAGIFDGSTLGKIEVMGPDAEAFLNFVYYNTIKSLKPGGIRYGFMLTEGGIVYDDGVVTRVDQNRFIVSCSSSHVDGVRTHLEAWRQDGNDPDRIFVHDQTTAWATVTVTGPKARDVLSSLDTTIDLAPDAFPHMTFREGTMGAIPLRIARVSFSGDLSYEVSVPTGHAETLWNAITAAGKEQGVSPIGLEAMSILRAEKGFIIIGKDTDGETMPHDLGFTIPRAKKKAAFIGDRSLHTEKANADDRKVLVGLSVPDGEPPLATGAHAFTETPTRRSLGYVTSSYQSPNVGPIALAIIEAPHAKVGDTIKIWHKEEVREVTICDPCRFDSEGGRLHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SFL5</accession>
    <name>A0A1M5SFL5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="5">tRNA-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">SAMN05444003_2943</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5 6">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37316.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902355.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2943"/>
    <dbReference type="EnsemblBacteria" id="SHH37316">
        <property type="protein sequence ID" value="SHH37316"/>
        <property type="gene ID" value="SAMN05444003_2943"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008231">
        <property type="entry name" value="CsaA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002547">
        <property type="entry name" value="tRNA-bd_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11586:SF37">
        <property type="entry name" value="PTHR11586:SF37"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01588">
        <property type="entry name" value="tRNA_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02222">
        <property type="entry name" value="chap_CsaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50886">
        <property type="entry name" value="TRBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="1 3" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="TRNA-binding" evidence="4">
        <location>
            <begin position="9"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50886"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="SHH37316.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="113" mass="12404" checksum="ADDEF709498305B6" modified="2017-03-15" version="1">MTPEITYDDFLKVDIRVGKVVKAEPYPEARKPAIKLWVDFGEGIGEKKSSAQLTAHYTPESLVGRYVMAVVNFPPRQIGRFMSEILVLGFTDADGGVVLATPDKEIPIGGCLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SHH3</accession>
    <name>A0A1M5SHH3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2972</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH37941.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902402.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2972"/>
    <dbReference type="EnsemblBacteria" id="SHH37941">
        <property type="protein sequence ID" value="SHH37941"/>
        <property type="gene ID" value="SAMN05444003_2972"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH37941.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="101" mass="11155" checksum="14C243746967541D" modified="2017-03-15" version="1">MRLLLISCVALALAACGPRVTGEVGKACLAADRQAASRTLCACVQNAANATLNGSDQARVATFFENPELANDTRISNRRSDERFWDRYRSFTQRAEQSCRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SJ83</accession>
    <name>A0A1M5SJ83_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Hint domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3005</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38652.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902446.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3005"/>
    <dbReference type="EnsemblBacteria" id="SHH38652">
        <property type="protein sequence ID" value="SHH38652"/>
        <property type="gene ID" value="SAMN05444003_3005"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028992">
        <property type="entry name" value="Hedgehog/Intein_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13403">
        <property type="entry name" value="Hint_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hint_2" evidence="1">
        <location>
            <begin position="30"/>
            <end position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13403"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH38652.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="177" mass="19054" checksum="6478A364A97952AB" modified="2017-03-15" version="1">MDSASLTLDTAVESSILQIGDRHSVPHVGLLSGQKVITTAGQIPVEAVESGTRLLTFDGGYQPVTDVRRERLPLGASVMVVPKGVFGNQGEILMLPEQDVIFDLDMSAEAFVDPFAMIRASDLSGHWGIKPRVVLEPLLSTQILFAQDEVLRTSVAAMFHCPQAVGAEVMLDQRQAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SKC3</accession>
    <name>A0A1M5SKC3_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Propionyl-CoA synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2991</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38353.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902548.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2991"/>
    <dbReference type="EnsemblBacteria" id="SHH38353">
        <property type="protein sequence ID" value="SHH38353"/>
        <property type="gene ID" value="SAMN05444003_2991"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032387">
        <property type="entry name" value="ACAS_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16177">
        <property type="entry name" value="ACAS_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ACAS_N" evidence="3">
        <location>
            <begin position="3"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="65"/>
            <end position="499"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="509"/>
            <end position="587"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF16177"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH38353.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="629" mass="68606" checksum="85E665DACE2BC5D6" modified="2017-03-15" version="1">MRYQDVYDRAANDPEAFWLEQAETIDWVKPPSKALDDSNAPLYRWFTDAEVNTCYNAVDRHVENGRGDQAAILYDSPVTDTKRTITYAQLKDDVASLAGALLAKGVETGDRVIIYMPMVPEAVTAMLACARIGAIHSVVFGGFAANELAVRIDDATPKAIIAGSCGIEPGRIVEYKPLLDGAIDLASHKPDFCVIFQRDECRADLTARDVDWHEVQKGVEPAPCIPVKGDHPAYILYTSGTTGQPKGVVRPTAGHLVALNWTMKNIYQCDPGDVFWAASDVGWVVGHSYICYAPLIHGNTTVVFEGKPIGTPDAGTFWRVIAEHNVRSFFTAPTAFRAIKREDPTGEEIKKYDISGLRALYLAGERADPDTIEWAQSTMGVPVYDHWWQTESGFAMIGNPAGIEPLPVKIGSPTVALPGFQIDILDEGGNPMPAGELGAIAIKLPLAPGTLPTLWNAEERFKKSYLTTFPGYYETGDAGYKDEDGYIYIMARTDDVINVAGHRLSTGAMEEVLAGHPDVAECAVIGVTDELKGQLPMGFLCTNKGTETSDEQIKQDCIKLMRDKIGPVAAFKLVTIVDRLPKTRSGKILRATMVKIADSEDYKMPATIDDPAILDEIKDALIPMGYAKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="7" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SRX2</accession>
    <name>A0A1M5SRX2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Hemin uptake protein hemP</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3066</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41200.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3066"/>
    <dbReference type="EnsemblBacteria" id="SHH41200">
        <property type="protein sequence ID" value="SHH41200"/>
        <property type="gene ID" value="SAMN05444003_3066"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019600">
        <property type="entry name" value="Hemin_uptake_protein_HemP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10636">
        <property type="entry name" value="hemP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH41200.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="55" mass="6063" checksum="2A395619EC45A3F6" modified="2017-03-15" version="1">MNVHAMTSTVIPPKNHLPTYDASDLTKGGDQAQIVLNDQVYNLRITRAGKLILTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SS87</accession>
    <name>A0A1M5SS87_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3064</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41158.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902596.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3064"/>
    <dbReference type="EnsemblBacteria" id="SHH41158">
        <property type="protein sequence ID" value="SHH41158"/>
        <property type="gene ID" value="SAMN05444003_3064"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032331">
        <property type="entry name" value="DUF4856"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16148">
        <property type="entry name" value="DUF4856"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012816103" evidence="1">
        <location>
            <begin position="25"/>
            <end position="470"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH41158.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="470" mass="50331" checksum="9EE8A78C68B953B1" modified="2017-03-15" version="1">MLKSILKSTTIVASLAMAATAAMADGHAQTYGPFPITLQGYEGDKTDSTGYTGQIARHVLHDSLKKLAGQGDGGSNAEELEAQMLAYFSGSDEDLPIIAPATKGDFVVAQTMVGEISGGKNIEGKFYNGLMPAWPGAMSGVDVALNMISNAAASNAGFSPETGYDWGQLISKFTMGAMAYNQAVDNYLDEKLGADNKPNNAPYSDGAHYTGKEHSWDEAFGYFGAAAHTLALSADDAYAINKLSDFAVADANGDGAVDLRTEMVFGPAYYAASFDRAGTQSTDYLQTIMQAYIDGRNVITDANGEALTDDQRAQLVSLASTIEDNWEQVLAEAVFKYAGSVYKDINALAEAGDDNAEAYRTYAKHWGELKGFSMALQSGRNNLGETAVTMNDLILFGPPTLDNSYVTGFDSDGNFEMDRRITWNDYQLQLLQLQQLMVDKFGVQSRVNDQLADLEGLAESLGSASTAETD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SVM9</accession>
    <name>A0A1M5SVM9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Integrase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_3115</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42063.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902669.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3115"/>
    <dbReference type="EnsemblBacteria" id="SHH42063">
        <property type="protein sequence ID" value="SHH42063"/>
        <property type="gene ID" value="SAMN05444003_3115"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.390">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038488">
        <property type="entry name" value="Integrase_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025166">
        <property type="entry name" value="Integrase_DNA_bind_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13356">
        <property type="entry name" value="Arm-DNA-bind_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tyr recombinase" evidence="3">
        <location>
            <begin position="208"/>
            <end position="380"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH42063.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="392" mass="44554" checksum="C26347A9304D4F1F" modified="2017-03-15" version="1">MVALSGKLTKKLVENLGPGRHGDGAGLYLVVDPSGARRWIVRVTVKGQKNRKGAPLRTDFGLGGADVVTLNQARERALEYRRMAKSGLNPRYNTNREIPTFEELAQQVHIERLPTWKNPKHGQQWINTLRDYAFPKIGRMPVDSIGQPEVLMCLSPIWTLKHETAKRLAQRIKAVLDVAKSRGYRDGENPVTAVKDAGVLPKVKAKPVHHEAMPWRDVPAFYGELEKRTATAAKALQFTILTACRTSEVLGMTWEEVDWDGQLWIIPAERMKMGVQHRVPLTDEMIRILEVVRPLGGVYVFRGQRRDAPLSNMSMLMLLRRMGREDFTVHGFRSSFRDWASEESGFPREVAEAALAHQVGSDVERAYARSDLLERRHRLMSIWNLFSTDYEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SW51</accession>
    <name>A0A1M5SW51_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 11">DNA-directed RNA polymerase subunit alpha</fullName>
            <shortName evidence="11">RNAP subunit alpha</shortName>
            <ecNumber evidence="2 11">2.7.7.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10 11">RNA polymerase subunit alpha</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9 11">Transcriptase subunit alpha</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">rpoA</name>
        <name evidence="13" type="ORF">SAMN05444003_3155</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13 14">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8 11">
            <text>a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate + RNA(n+1)</text>
            <dbReference type="Rhea" id="RHEA:21248"/>
            <dbReference type="Rhea" id="RHEA-COMP:14527"/>
            <dbReference type="Rhea" id="RHEA-COMP:17342"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61557"/>
            <dbReference type="ChEBI" id="CHEBI:140395"/>
            <dbReference type="EC" id="2.7.7.6"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="11">Homodimer. The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.</text>
    </comment>
    <comment type="domain">
        <text evidence="11">The N-terminal domain is essential for RNAP assembly and basal transcription, whereas the C-terminal domain is involved in interaction with transcriptional regulators and with upstream promoter elements.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 11">Belongs to the RNA polymerase alpha chain family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.6" evidence="2 11"/>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42752.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902820.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3155"/>
    <dbReference type="EnsemblBacteria" id="SHH42752">
        <property type="protein sequence ID" value="SHH42752"/>
        <property type="gene ID" value="SAMN05444003_3155"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003899">
        <property type="term" value="F:DNA-directed 5'-3' RNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006351">
        <property type="term" value="P:transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.120.12">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00059">
        <property type="entry name" value="RNApol_bact_RpoA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011262">
        <property type="entry name" value="DNA-dir_RNA_pol_insert"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011263">
        <property type="entry name" value="DNA-dir_RNA_pol_RpoA/D/Rpb3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011773">
        <property type="entry name" value="DNA-dir_RpoA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036603">
        <property type="entry name" value="RBP11-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011260">
        <property type="entry name" value="RNAP_asu_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036643">
        <property type="entry name" value="RNApol_insert_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32108">
        <property type="entry name" value="PTHR32108"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01000">
        <property type="entry name" value="RNA_pol_A_bac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03118">
        <property type="entry name" value="RNA_pol_A_CTD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01193">
        <property type="entry name" value="RNA_pol_L"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00662">
        <property type="entry name" value="RPOLD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55257">
        <property type="entry name" value="SSF55257"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56553">
        <property type="entry name" value="SSF56553"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02027">
        <property type="entry name" value="rpoA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 11 13" id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword evidence="6 11" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 11" id="KW-0804">Transcription</keyword>
    <keyword evidence="5 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="RPOLD" evidence="12">
        <location>
            <begin position="26"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="region of interest" description="Alpha N-terminal domain (alpha-NTD)" evidence="11">
        <location>
            <begin position="1"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="region of interest" description="Alpha C-terminal domain (alpha-CTD)" evidence="11">
        <location>
            <begin position="250"/>
            <end position="338"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00015972"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00024550"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00032524"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00033070"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM00662"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="SHH42752.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="338" mass="37102" checksum="7CE1123DDE819F20" modified="2017-03-15" version="1">MIHKNWAELIKPTQLEVKPGNDPARQATVVAEPLERGFGLTLGNALRRVLMSSLQGAAITAVQIDNVLHEFSSVSGVREDVTDIVLNLKGVAIRMEVEGPKRLSVQAKGPGVVTAGDISETAGIEILNKDHVICHLDDGADLYIELTVNTGKGYVSADKNKPEDAPIGMMSIDAIYSPVKKVSYDVQPTREGQVLDYDKLTMKVETDGSITPDDAVAYAARILQDQLSIFVNFDEPESAQQGQEDDGLEFNPLLLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSLNEIKEVLSGMGLHLGMDVEDWPPDNIEDLAKKFDDQF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SYM7</accession>
    <name>A0A1M5SYM7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">VPLPA-CTERM protein sorting domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3194</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH43562.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902791.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH43562">
        <property type="protein sequence ID" value="SHH43562"/>
        <property type="gene ID" value="SAMN05444003_3194"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022472">
        <property type="entry name" value="VPLPA-CTERM"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03370">
        <property type="entry name" value="VPLPA-CTERM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013359405" evidence="2">
        <location>
            <begin position="23"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="201"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH43562.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="226" mass="23268" checksum="909CFF93CD01D2A2" modified="2017-03-15" version="1">MKKTIFAAVAATAMVVGTAASAATLNFVGSGGTDNSQVLSNFDISGVPGLADGTEIAVINGADKNSSNGLFVDGEGEISVTYTYLGSEAGFDNYGAIIGNSPTRTFQNYSDGFASESNVDDVAFGTQLAGAIDLIFQTARDNGPDDQIANQGGASPASENFAIGYFMVNPNYYVLMFDDLTGSNTDRDFDDLVIGVQVSAVPLPASSLLLLAGVGGLAAMKRRKKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SYW4</accession>
    <name>A0A1M5SYW4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aminodeoxychorismate synthase, subunit I</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3201</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH43717.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902803.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3201"/>
    <dbReference type="EnsemblBacteria" id="SHH43717">
        <property type="protein sequence ID" value="SHH43717"/>
        <property type="gene ID" value="SAMN05444003_3201"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009396">
        <property type="term" value="P:folic acid-containing compound biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005802">
        <property type="entry name" value="ADC_synth_comp_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005801">
        <property type="entry name" value="ADC_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019999">
        <property type="entry name" value="Anth_synth_I-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015890">
        <property type="entry name" value="Chorismate_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11236">
        <property type="entry name" value="PTHR11236"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00425">
        <property type="entry name" value="Chorismate_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00095">
        <property type="entry name" value="ANTSNTHASEI"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56322">
        <property type="entry name" value="SSF56322"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00553">
        <property type="entry name" value="pabB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Chorismate_bind" evidence="1">
        <location>
            <begin position="110"/>
            <end position="364"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH43717.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="370" mass="40750" checksum="720BF32D6B74A68B" modified="2017-03-15" version="1">MTPRVLFDKGPLQMGTVFEAPVSLIRADTSDEVPAALDAMQAAKDAGHWLAGYASYELGYLFTERLRAILPENRSVPFLLFGVFERPRPDDDVAEGDATLSAPAPLWDIDTYRTAYDQVKDHVAAGDFYQANLTFPMEATLTGPPAALYRDLRERQPVPHGAMVDLGGPVVLSRSPELFFRATSEGELTTRPMKGTIARGSTIQEDVVNSSWLRRSEKNRAENLMIVDLLRNDMSRISEVGSVKVPELYTVESYATVYQMTSTIRSQMIEGTSIPQIFEALFPCGSVTGAPKIMSMTVLERLEYGPRDVYCGSIGWIAPDGAMEFNVAIRTLTCFDDGRVRLNVGGGIVHDSEGADEYDEALLKARFASL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T4Y7</accession>
    <name>A0A1M5T4Y7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Predicted dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_3241</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH45794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902899.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3241"/>
    <dbReference type="EnsemblBacteria" id="SHH45794">
        <property type="protein sequence ID" value="SHH45794"/>
        <property type="gene ID" value="SAMN05444003_3241"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004104">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000683">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01408">
        <property type="entry name" value="GFO_IDH_MocA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02894">
        <property type="entry name" value="GFO_IDH_MocA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GFO_IDH_MocA" evidence="1">
        <location>
            <begin position="2"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="domain" description="GFO_IDH_MocA_C" evidence="2">
        <location>
            <begin position="135"/>
            <end position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH45794.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="378" mass="42075" checksum="878BD46FD848F073" modified="2017-03-15" version="1">MRVVTAGIGLRAGHVLSLLKESMPEVEFVGYFDPQPTFLHMIGEDIPRFDDVETMLAQTKPDLFFVGSPNSFHLEHIKQGLDAGVRIFTEKPVVTTKEDTMELAALLAEHGTDSVMVGLVLRYSQHMIDLRANLDVLGPIVSLEASEHIAPYHGAFFMRDWRRMIRWSGGFMLEKCCHDIDIYNMVTKSRPKSVASFGGRKSFVPQFAPTSNVENEIMHRKPSVWESVDDPFHSDGDIIDHQTAILQYENGASLAFHTNLNVPDEHRRFCVMGALGMAEGDFVRGNLQVTLRDGSVVADHDYTQMDSARASAHYGADHMMVDEIVSFLKGEAETLPVGVVDALEAGLAAMAMDEARITGRVVDLTETWAEFDGYALRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L058</accession>
    <name>A0A1M5L058_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0022</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG58376.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG58376">
        <property type="protein sequence ID" value="SHG58376"/>
        <property type="gene ID" value="SAMN05444003_0022"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="37"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG58376.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="60" mass="6720" checksum="DDF557D5298738B0" modified="2017-03-15" version="1">MFPRRHRSVPNYTNAFLVTVFGILFMGFWVLAALAGGLWVAVVALGLNQLITALDRRMAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L6I8</accession>
    <name>A0A1M5L6I8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0104</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60043.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898460.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0104"/>
    <dbReference type="EnsemblBacteria" id="SHG60043">
        <property type="protein sequence ID" value="SHG60043"/>
        <property type="gene ID" value="SAMN05444003_0104"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019201">
        <property type="entry name" value="DUF2065"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09838">
        <property type="entry name" value="DUF2065"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="45"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG60043.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="66" mass="7133" checksum="864AE4D395B9972C" modified="2017-03-15" version="1">MIAYILLALGLVLLIEGLVYALAPSLVEQLLAALRSIPIDQRRIMGVFAMVLGALLLWCARALGLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5L7L5</accession>
    <name>A0A1M5L7L5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">N-methylglutamate dehydrogenase subunit A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0145</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG60950.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898502.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0145"/>
    <dbReference type="EnsemblBacteria" id="SHG60950">
        <property type="protein sequence ID" value="SHG60950"/>
        <property type="gene ID" value="SAMN05444003_0145"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008115">
        <property type="term" value="F:sarcosine oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046653">
        <property type="term" value="P:tetrahydrofolate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001763">
        <property type="entry name" value="Rhodanese-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006278">
        <property type="entry name" value="SoxB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01373">
        <property type="entry name" value="soxB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50206">
        <property type="entry name" value="RHODANESE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rhodanese" evidence="1">
        <location>
            <begin position="34"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG60950.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="416" mass="45624" checksum="9143275F8CC2BB09" modified="2017-03-15" version="1">MRYSGLRVIKEALTGHKGWTPAWRDPDPQSQYDYVIIGGGGHGLATAYYLAKEFGQKKIAVLEKGWIGGGNVGRNTTIIRSNYLLDGNEPFYEFSLKLWEGLEQDFNYNAMVSQRGILNLIHTDAQRDAFIRRGNAMFLNGADAELLTTRQIKERYPFLNTNDARFPIKGGLAQHRGGTVRHDAVAWGYARGADSRGVDIIQNCEVTGFRRENGKVVGVETSRGYIGAGKVGCAVAGSSSRLMSKVDMRLPMESHVLQAFVSEGLKPVMPGVVTFGAGHFYCSQSDKGGLVFGGDIDGYNTYAQRGNLPVVEDVCEGGMAIFPAFGRARLLRMWGGVMDMSMDGSPIIDRTHIDGLYFNGGWCYGGFKATPASGFCFAHLLAKDTPHPTAKAYRFDRFEKGLMIDEKGMGAQPNLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LGC9</accession>
    <name>A0A1M5LGC9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nitrate/nitrite transport system substrate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_0247</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG63433.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072898668.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0247"/>
    <dbReference type="EnsemblBacteria" id="SHG63433">
        <property type="protein sequence ID" value="SHG63433"/>
        <property type="gene ID" value="SAMN05444003_0247"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd13553">
        <property type="entry name" value="PBP2_NrtA_CpmA_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044527">
        <property type="entry name" value="NrtA/CpmA_ABC-bd_dom"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013019612" evidence="1">
        <location>
            <begin position="22"/>
            <end position="456"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG63433.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="456" mass="50375" checksum="944D572035506291" modified="2017-03-15" version="1">MKALRAIALATTSVLATTASAQSLDLEKEDLTFGFIKLTDMAPLAIAYELGYFEDEGLFVTLEAQANWKVLLDGVISGQLDGAHMLAGQPLAATIGYGTEAHIITPFSMDLNGNGITVSNEIWEEMKPNVPLMDDGRPRHPISASALAPVVEDYKDQGLPFNMGMVFPVSTHNYEIRYWLAAGGLEPGYYSPQDISGQIGADVLLSVTPPPQMPATMEAGTIYGYAVGEPWNQQAVFKGIGVPVITDYDMWKNNPEKVFGLTKEFTEENPNTTLALTKALIRAAMWLDENDNANRPEAVEILSRSEYVGADYEVIANSMTGFFEFEKGDVRPAPDFNVFFRYNATYPYYSDAIWYLTQMRRWGQIPETMSDEWYFETAAEVYRPDIYLEAARLLVDEGLANEADFPWDTDGFKAATPATDIIDGIPYDGRTPNAYIDSLPIGLKSGQTVIDSEIQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LQD6</accession>
    <name>A0A1M5LQD6_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Uroporphyrinogen-III C-methyltransferase</fullName>
            <ecNumber evidence="2">2.1.1.107</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_0426</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="7">Porphyrin-containing compound metabolism; siroheme biosynthesis; precorrin-2 from uroporphyrinogen III: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 8">Belongs to the precorrin methyltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.107" evidence="2"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG67362.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0426"/>
    <dbReference type="EnsemblBacteria" id="SHG67362">
        <property type="protein sequence ID" value="SHG67362"/>
        <property type="gene ID" value="SAMN05444003_0426"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00262">
        <property type="reaction ID" value="UER00211"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004851">
        <property type="term" value="F:uroporphyrin-III C-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019354">
        <property type="term" value="P:siroheme biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd11642">
        <property type="entry name" value="SUMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1010.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000878">
        <property type="entry name" value="4pyrrol_Mease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035996">
        <property type="entry name" value="4pyrrol_Methylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014777">
        <property type="entry name" value="4pyrrole_Mease_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014776">
        <property type="entry name" value="4pyrrole_Mease_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006366">
        <property type="entry name" value="CobA/CysG_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003043">
        <property type="entry name" value="Uropor_MeTrfase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00590">
        <property type="entry name" value="TP_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53790">
        <property type="entry name" value="SSF53790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01469">
        <property type="entry name" value="cobA_cysG_Cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00840">
        <property type="entry name" value="SUMT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 8 11" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="4 8 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TP_methylase" evidence="10">
        <location>
            <begin position="42"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="285"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012162"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00025705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG67362.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="304" mass="32495" checksum="1FF1F967A3EB3C6E" modified="2017-03-15" version="1">MRKCVSFAIFPSAAQRCNIARMTTQAPLPDHNWPVMEPGWVWLCGAGPGDPGLLTLHALNALRQADVVIYDALVQQDILQWAPQADHVYAGKRGGKPSAKQRDISLRLVDLAREGKRVLRLKGGDPFVFGRGGEEAQTLVQHGIQVRIIPGISAGIGGLAYAGIPVTHRDVNQSVTFVTGHDQSGNTPGSLDWASISKGSQVIVIYMGMKHIAQIAAKLMEAGRSIHEPVAVVSTATTDEQRALETTLGSIVEDIDAAGMEPPAIICVGKSVLMRQALDWQAQAAGEAPRNLDPLDRGRPAESA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LV37</accession>
    <name>A0A1M5LV37_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Phosphoribosylformylglycinamidine synthase subunit PurQ</fullName>
            <shortName evidence="1">FGAM synthase</shortName>
            <ecNumber evidence="1">6.3.5.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Formylglycinamide ribonucleotide amidotransferase subunit I</fullName>
            <shortName evidence="1">FGAR amidotransferase I</shortName>
            <shortName evidence="1">FGAR-AT I</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Glutaminase PurQ</fullName>
            <ecNumber evidence="1">3.5.1.2</ecNumber>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Phosphoribosylformylglycinamidine synthase subunit I</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">purQ</name>
        <name evidence="2" type="ORF">SAMN05444003_0497</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O + L-glutamine + N(2)-formyl-N(1)-(5-phospho-beta-D-ribosyl)glycinamide = 2-formamido-N(1)-(5-O-phospho-beta-D-ribosyl)acetamidine + ADP + H(+) + L-glutamate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:17129"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:147286"/>
            <dbReference type="ChEBI" id="CHEBI:147287"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.5.3"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H2O + L-glutamine = L-glutamate + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:15889"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="EC" id="3.5.1.2"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole from N(2)-formyl-N(1)-(5-phospho-D-ribosyl)glycinamide: step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the FGAM synthase complex composed of 1 PurL, 1 PurQ and 2 PurS subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EC" id="6.3.5.3" evidence="1"/>
    <dbReference type="EC" id="3.5.1.2" evidence="1"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG68992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899021.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0497"/>
    <dbReference type="EnsemblBacteria" id="SHG68992">
        <property type="protein sequence ID" value="SHG68992"/>
        <property type="gene ID" value="SAMN05444003_0497"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00128"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004359">
        <property type="term" value="F:glutaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004642">
        <property type="term" value="F:phosphoribosylformylglycinamidine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00421">
        <property type="entry name" value="PurQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010075">
        <property type="entry name" value="PRibForGlyAmidine_synth_PurQ"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001586">
        <property type="entry name" value="FGAM_synth_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01737">
        <property type="entry name" value="FGAM_synth_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0436">Ligase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="1" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Nucleophile" evidence="1">
        <location>
            <position position="86"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="194"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00421"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG68992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="222" mass="23533" checksum="7D89AF5052935BE1" modified="2017-03-15" version="1">MKAAVLVFPGSNCDRDMAVALKAAGADVEMVWHKDADLPSGLDLVAVPGGFSFGDYLRCGAIAAQSPICKALVDHVNRGGYALGVCNGFQVLTETRLLPGVLMRNAKLKFVCKTIGLQVETSNSAFTEAFNAGDTVGFPVAHHDGNYTVDDDTLSTLQDQDRIAFTYTENPNGSVSDIAGVLSENRRVLGMMPHPERAVDQGHGGTDGQALFRGLLSQFADA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5LYX9</accession>
    <name>A0A1M5LYX9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Fe-S cluster assembly ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_0553</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ABC transporter superfamily. Ycf16 family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG70215.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899095.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0553"/>
    <dbReference type="EnsemblBacteria" id="SHG70215">
        <property type="protein sequence ID" value="SHG70215"/>
        <property type="gene ID" value="SAMN05444003_0553"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03217">
        <property type="entry name" value="ABC_FeS_Assembly"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010230">
        <property type="entry name" value="FeS-cluster_ATPase_SufC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43204">
        <property type="entry name" value="PTHR43204"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01978">
        <property type="entry name" value="sufC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="2"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="36"/>
            <end position="43"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006216"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG70215.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="251" mass="27195" checksum="7E3BE1111C7A4A3A" modified="2017-03-15" version="1">MLEIKDLRVDLEEEEKSILKGVDLTIEPGTVHAIMGPNGSGKSTLSYVLSGKDGYEVTGGAATLDGEDLLDLEPEERAAAGLFLAFQYPVEIPGVGNMTFLRTAVNAQRKARGEEELSAGDFLKEVRAKAKTLKIDADMLKRPVNVGFSGGEKKRNEILQMAMLEPKMCILDETDSGLDVDAMKLVSEGVNALRSEGRAFLVITHYQRLLDHIKPDVVHIMADGKIIKSGGPELALEVENNGYADILAEVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M221</accession>
    <name>A0A1M5M221_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Coenzyme Q-binding protein COQ10</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_0604</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ribosome association toxin RatA family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG71357.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899157.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0604"/>
    <dbReference type="EnsemblBacteria" id="SHG71357">
        <property type="protein sequence ID" value="SHG71357"/>
        <property type="gene ID" value="SAMN05444003_0604"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048039">
        <property type="term" value="F:ubiquinone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045333">
        <property type="term" value="P:cellular respiration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006744">
        <property type="term" value="P:ubiquinone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07813">
        <property type="entry name" value="COQ10p_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044996">
        <property type="entry name" value="COQ10-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005031">
        <property type="entry name" value="COQ10_START"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12901">
        <property type="entry name" value="PTHR12901"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03364">
        <property type="entry name" value="Polyketide_cyc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Polyketide_cyc" evidence="2">
        <location>
            <begin position="10"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03364"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG71357.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="147" mass="16979" checksum="E41B985FDCEED352" modified="2017-03-15" version="1">MPAHQETRVLPYTAQQMYDLVADVANYPKFLPWTAAARIRSVDEKGDHAVMLADLVISFKVFRERFGSRVVLWPEQQKIDTSYLDGPFKHLESTWQFKDVDEGCEVSFSVDFEFKSRLLQGAAGMFFNEAMQRVVRAFEGRAKELYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5M9H5</accession>
    <name>A0A1M5M9H5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0709</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG73875.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899339.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0709"/>
    <dbReference type="EnsemblBacteria" id="SHG73875">
        <property type="protein sequence ID" value="SHG73875"/>
        <property type="gene ID" value="SAMN05444003_0709"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG73875.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="250" mass="26130" checksum="147FF10A7E86D594" modified="2017-03-15" version="1">MTYTDEDLIAFLDGTASEELAASIETELAEDSDLEDRLMRLDPLSAPVSDAFSRLKGPAESAVDLPAIDPEARAGSLARFLPLVAAAVLGAVVATALMPPSPDAADWRVQVANYQALYGESTVSATQFSSEELAEQTTVAGQEIGLAGLETVPELANGLTHVRTQVLQVDGVPLAQIVFRTDNGIPVALCGLPRDSGTAVSEIGVGSMSKMRSASFDTGSHSWLLIGGKDSDLIVENAKLFQSALEGLDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MKB8</accession>
    <name>A0A1M5MKB8_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 14">Inosine-5'-monophosphate dehydrogenase</fullName>
            <shortName evidence="7">IMP dehydrogenase</shortName>
            <shortName evidence="7">IMPD</shortName>
            <shortName evidence="7">IMPDH</shortName>
            <ecNumber evidence="7 14">1.1.1.205</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">guaB</name>
        <name evidence="16" type="ORF">SAMN05444003_0859</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16 17">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7 14">
            <text>H2O + IMP + NAD(+) = H(+) + NADH + XMP</text>
            <dbReference type="Rhea" id="RHEA:11708"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57464"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <dbReference type="EC" id="1.1.1.205"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </cofactor>
    </comment>
    <comment type="activity regulation">
        <text evidence="7">Mycophenolic acid (MPA) is a non-competitive inhibitor that prevents formation of the closed enzyme conformation by binding to the same site as the amobile flap. In contrast, mizoribine monophosphate (MZP) is a competitive inhibitor that induces the closed conformation. MPA is a potent inhibitor of mammalian IMPDHs but a poor inhibitor of the bacterial enzymes. MZP is a more potent inhibitor of bacterial IMPDH.</text>
    </comment>
    <comment type="pathway">
        <text evidence="7 14">Purine metabolism; XMP biosynthesis via de novo pathway; XMP from IMP: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 13">Belongs to the IMPDH/GMPR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.205" evidence="7 14"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG77359.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899563.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0859"/>
    <dbReference type="EnsemblBacteria" id="SHG77359">
        <property type="protein sequence ID" value="SHG77359"/>
        <property type="gene ID" value="SAMN05444003_0859"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00601">
        <property type="reaction ID" value="UER00295"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003938">
        <property type="term" value="F:IMP dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006177">
        <property type="term" value="P:GMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00381">
        <property type="entry name" value="IMPDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01964">
        <property type="entry name" value="IMPDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005990">
        <property type="entry name" value="IMP_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015875">
        <property type="entry name" value="IMP_DH/GMP_Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001093">
        <property type="entry name" value="IMP_DH_GMPRt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11911">
        <property type="entry name" value="PTHR11911"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00478">
        <property type="entry name" value="IMPDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000130">
        <property type="entry name" value="IMPDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01302">
        <property type="entry name" value="IMP_dehydrog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00487">
        <property type="entry name" value="IMP_DH_GMP_RED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 12" id="KW-0129">CBS domain</keyword>
    <keyword evidence="3 7 14" id="KW-0332">GMP biosynthesis</keyword>
    <keyword evidence="2 7 14" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7 10 14" id="KW-0520">NAD</keyword>
    <keyword evidence="5 7 13" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4 7 11" id="KW-0630">Potassium</keyword>
    <keyword evidence="7 14" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CBS" evidence="15">
        <location>
            <begin position="91"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="15">
        <location>
            <begin position="151"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="region of interest" description="IMP binding" evidence="7 9">
        <location>
            <begin position="333"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="region of interest" description="IMP binding" evidence="7 9">
        <location>
            <begin position="356"/>
            <end position="357"/>
        </location>
    </feature>
    <feature type="region of interest" description="IMP binding" evidence="7 9">
        <location>
            <begin position="380"/>
            <end position="384"/>
        </location>
    </feature>
    <feature type="active site" description="Thioimidate intermediate" evidence="7 8">
        <location>
            <position position="302"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="7 8">
        <location>
            <position position="396"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="245"/>
            <end position="247"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="245"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 10">
        <location>
            <begin position="295"/>
            <end position="297"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 11">
        <location>
            <position position="297"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 11">
        <location>
            <position position="299"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 9">
        <location>
            <position position="300"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 11">
        <location>
            <position position="302"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 9">
        <location>
            <position position="410"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="464"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
            <note>ligand shared between two tetrameric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="465"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
            <note>ligand shared between two tetrameric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="466"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
            <note>ligand shared between two tetrameric partners</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005502"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000130-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000130-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR000130-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR000130-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU003927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU003928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="SHG77359.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="482" mass="50342" checksum="477DDB539FB8599F" modified="2017-03-15" version="1">MEIREALTFDDVLLVPAASSVLPSTADTSTFVTKSIALNIPLLSSAMDTVTESRMAIAMAQAGGMGVVHKNLDVDAQAKEIRRVKRFVSGTVYNPITLTRDQTLADAKALMERYRVTGFPVVGADGRVEGIVTNRDMRFAQDDATPVHAMMTSSDLAMMQEPADLDEARSLMQARRIEKLLITDAEGKLTGLLTLKDSEQAVLNPMACKDELGRLRVAAATGVGDAGFERSEALVDAGVDMLVVDTAHGHSEGVAKAVERAKSLSNQVQVVAGNVATGEATRALIGAGADAVKVGIGPGSICTTRMVAGVGVPQLTAIMDSAAAAGDTPVIADGGIKFSGDFAKAIAAGASCAMVGSMIAGTDESPGEVILYQGRSFKSYRGMGSMGAMARGSADRYFQKDAATDKLVPEGIEGQVPYKGSAGTVIHQLVGGLRAAMGYTGNATIQEMRSKANFVKITGAGLKESHVHDVQITRESPNYRVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MRD1</accession>
    <name>A0A1M5MRD1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">3-oxoacyl-[acyl-carrier protein] reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_0980</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG79944.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899724.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_0980"/>
    <dbReference type="EnsemblBacteria" id="SHG79944">
        <property type="protein sequence ID" value="SHG79944"/>
        <property type="gene ID" value="SAMN05444003_0980"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG79944.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="259" mass="26489" checksum="1565A6D9F432F0AC" modified="2017-03-15" version="1">MDLGIRGKKALVCASSKGLGRGCAAALAEAGVDLVMNGRSADSLAAVAEDIRAAFGVEVTEVAADVSTEAGQAALLEAAGSVDILVNNAGGPPPGMWTDWSRDDFIAALDANMLAPIALMKTLLPGMIDQGWGRVVNITSVSVKSPIPQLGLSNSARAGLTGYVAGTARQVAPNGVTINNLLPGIHATDRAISLDTGVAEAQGIDIEQARQNRYATIPVRRYGTAAEFGATCAFLCSQHAGFIIGQNILLDGGAYNATL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5MZQ4</accession>
    <name>A0A1M5MZQ4_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Dihydropteroate synthase</fullName>
            <shortName evidence="1">DHPS</shortName>
            <ecNumber evidence="1">2.5.1.15</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Dihydropteroate pyrophosphorylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_1091</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; tetrahydrofolate biosynthesis; 7,8-dihydrofolate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate and 4-aminobenzoate: step 1/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the DHPS family.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.15" evidence="1"/>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG82233.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899823.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1091"/>
    <dbReference type="EnsemblBacteria" id="SHG82233">
        <property type="protein sequence ID" value="SHG82233"/>
        <property type="gene ID" value="SAMN05444003_1091"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00077">
        <property type="reaction ID" value="UER00156"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004156">
        <property type="term" value="F:dihydropteroate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046656">
        <property type="term" value="P:folic acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046654">
        <property type="term" value="P:tetrahydrofolate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00739">
        <property type="entry name" value="DHPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045031">
        <property type="entry name" value="DHP_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006390">
        <property type="entry name" value="DHP_synth_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011005">
        <property type="entry name" value="Dihydropteroate_synth-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000489">
        <property type="entry name" value="Pterin-binding_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20941">
        <property type="entry name" value="PTHR20941"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00809">
        <property type="entry name" value="Pterin_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51717">
        <property type="entry name" value="SSF51717"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01496">
        <property type="entry name" value="DHPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00792">
        <property type="entry name" value="DHPS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00793">
        <property type="entry name" value="DHPS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50972">
        <property type="entry name" value="PTERIN_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0289">Folate biosynthesis</keyword>
    <keyword evidence="1" id="KW-0460">Magnesium</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pterin-binding" evidence="2">
        <location>
            <begin position="73"/>
            <end position="327"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU361205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50972"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHG82233.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="340" mass="35941" checksum="E3DB5DF7497A35E6" modified="2017-03-15" version="1">MSKAYFRPIVRTEPARPKGAQRLAGGWCWFDQVVVLIRNGASEIVAASEVSAEILGRLTASRADLSGLSFHRPHLMGILNVTPDSFSDGGEHASASAAVERSGEMIADGVSIVDVGGESTRPGADFVPSSEEINRTFPPIAQVRTAHDVAISIDTRKADVAEAAVKAGASMINDVSGLSFDDRMAETVAASGLPVCIMHAQGDPKTMQDKPEYDDVLLDVYDYLEERIEIAVAAGIGRTKIIVDPGIGFGKTLVHNLQLLEGISLFHGLGCPILLGASRKRFIGTLGNAPDAADRLGGSVAVSLFGVNQGVQILRVHDTFATKQAIDLHMAMIGASRNDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N5R5</accession>
    <name>A0A1M5N5R5_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Lipoprotein-releasing system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">SAMN05444003_1199</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the ABC-4 integral membrane protein family. LolC/E subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84797.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899914.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1199"/>
    <dbReference type="EnsemblBacteria" id="SHG84797">
        <property type="protein sequence ID" value="SHG84797"/>
        <property type="gene ID" value="SAMN05444003_1199"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042953">
        <property type="term" value="P:lipoprotein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003838">
        <property type="entry name" value="ABC3_permease_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011925">
        <property type="entry name" value="LolCE_TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025857">
        <property type="entry name" value="MacB_PCD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02687">
        <property type="entry name" value="FtsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12704">
        <property type="entry name" value="MacB_PCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02212">
        <property type="entry name" value="lolCE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="11" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="31"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="285"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="330"/>
            <end position="359"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="394"/>
            <end position="413"/>
        </location>
    </feature>
    <feature type="domain" description="MacB_PCD" evidence="10">
        <location>
            <begin position="33"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="domain" description="FtsX" evidence="9">
        <location>
            <begin position="314"/>
            <end position="421"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF12704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHG84797.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="428" mass="46644" checksum="36BA8C86491DBE31" modified="2017-03-15" version="1">MAQSTAPFSKFEWMIAWRYIRAKRAEGGVNVMTWISLIGVTLAVFALIATLAVRSGFRAEFVDTILGANAHVTVYKQTQIPGTNQYTRIIRDYEELAAEIAQVEGVTRAAPLVRGQVLGNRGNRNTGLDLYGISYEDLLGIPRIAAPPESMGQIDRFDEGIAIGSGVARELGVTIGDRIRVISPNGTRTAMGTSPRTNAYEVVYIFTAGRFDIDRTRAYLPIAEAQSFLNRDGVADEIEVMVEEPDKVDELVPDIIAVVGDGALVWTWRDSAGAFLRALTVEDNVMFVILSILVLIASMNIISGLIMLVKNKGRDIGILRTMGLSEGSILRIFFICGAGIGTLGTILGVIIGCLFAIYIDSIFSFINYMSGGGVWDPSIRGIYALPAELHLSDVLKAVALSLSLSWIVTIFPARRAARMNPVEALRYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="8" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N6C9</accession>
    <name>A0A1M5N6C9_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Endonuclease/Exonuclease/phosphatase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1209</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85025.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1209"/>
    <dbReference type="EnsemblBacteria" id="SHG85025">
        <property type="protein sequence ID" value="SHG85025"/>
        <property type="gene ID" value="SAMN05444003_1209"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="SSF56219"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="1" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG85025.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="343" mass="38697" checksum="2B5A6DCB6E85C389" modified="2017-03-15" version="1">MGTDLGSARLRIATYNVEWFNRLFKDDGTLINDGSWSSRWNVTKARQTEALGMVFSKMDADAVMIIEAPDSSPHRDGVVALETFAKAFGLRANKAMIGFPNDTQQEIALLYDPQIMQVTHKPLADPERAPRFDQDFLLDVDVDAKPDPIRWSKPPLEIEVTLPNDKLLHLIGVHAKSKAPHGATEESEAIRISIENRRKQLAQCIWLRRRVQAHLSKSNPLIVLGDFNDGPGLDEYEKLFGRSGVEIVLGEEARNKLFDPHARMVLGSKFGAKPSTARFRRQDGPFLQALLDYIMVSEDLMSHQPNWQIWHPFDHPACFEDVTLRDALLDASDHFPVVLDIAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N6R7</accession>
    <name>A0A1M5N6R7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_1217</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG85201.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900442.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHG85201">
        <property type="protein sequence ID" value="SHG85201"/>
        <property type="gene ID" value="SAMN05444003_1217"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHG85201.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="66" mass="6327" checksum="8071C879410EF835" modified="2017-03-15" version="1">MLKKTWIIAAAATFGLAGCLNTDAERAVVGAGAGTIAADILGTDRAGTAIVGAAAGVFCDDAGICS</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5N7J0</accession>
    <name>A0A1M5N7J0_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1207</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG84983.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072899921.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1207"/>
    <dbReference type="EnsemblBacteria" id="SHG84983">
        <property type="protein sequence ID" value="SHG84983"/>
        <property type="gene ID" value="SAMN05444003_1207"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003695">
        <property type="entry name" value="Ppx_GppA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02541">
        <property type="entry name" value="Ppx-GppA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ppx-GppA" evidence="1">
        <location>
            <begin position="47"/>
            <end position="322"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02541"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG84983.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="515" mass="57079" checksum="E4C1304C59430D38" modified="2017-03-15" version="1">MDGQSDGDHVDWGLFGKPLFSSDLAKGLSRVGVIDVGSNSVRMVVFDGAARSPAYFYNEKIMCALGAGLSETGRLNPQGRERALAAIARFAALGEGMGILPLVTVATAAVREAEDGPDFCAEVEAKTGVKIQIIDGEEEARLSAQGVLLGWPGSYGLVCDIGGSSMELADLAEGRVGRRVTSPLGPLKLREIKGKKNRASFVKSTMKELHEQMDMPSGMRLFLVGGSWRAIARIDMERRGYPLTVLHEYRMTARRISRTAKYIAQSDLEDLRKRCGISEARMSLVPQAVIVLNELIRRFKPKDVAVSSYGIREGMLYEQMPDELRALDPLIEAARFAESKDARLPGFGRKLYDFVMPLFPRAGWQRRRIIQAACHLHDVSWRAHPDYRAEVTFDNATRANLGGLKHSERVLLGLALLTRYTNKTENTPFENLFTLLSPAQRREAVILGTAMRFGAMLWLTGDELPGRLKYKSKSKQLTLHLSKIAKPLYGEVAQSRFQALGDALDCETQVKFSKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NJ54</accession>
    <name>A0A1M5NJ54_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Probable membrane transporter protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_1448</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the 4-toluene sulfonate uptake permease (TSUP) (TC 2.A.102) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG89540.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900132.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1448"/>
    <dbReference type="EnsemblBacteria" id="SHG89540">
        <property type="protein sequence ID" value="SHG89540"/>
        <property type="gene ID" value="SAMN05444003_1448"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002781">
        <property type="entry name" value="TM_pro_TauE-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01925">
        <property type="entry name" value="TauE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="80"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="112"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="169"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="203"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="239"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="270"/>
            <end position="291"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363041"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHG89540.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="304" mass="32182" checksum="3EC2BEA3671490FD" modified="2017-03-15" version="1">MQIYLPIAEISVNAFLLFGLGGIVGILSGMFGVGGGFLMTPLLFFIGIPPAVAVATEANQIVASSFSGVLAHLKRKTVDLRMGTVLLIGGLIGAALGVLIFNYLKSLGQVDLLVRLCYVVFLGIIGSLMFVESLNAIRQTNTPGAAPKRRRHNWVHNLPFKMKFRVSGLYISVIPPVLVGICVGILAAIMGVGGGFIMVPAMIYLLGMPTKVVVGTSLFQIIFVTAFTTMLHATTNYTVDIVLAVLLLVGGVIGAQIGTRIGVHLKAEQLRILLALMVIAVCGKLALDLILQPSERYSIGTGGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5NQQ8</accession>
    <name>A0A1M5NQQ8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative tricarboxylic transport membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_1550</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000001">
        <property type="protein sequence ID" value="SHG91896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072900219.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000001.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_1550"/>
    <dbReference type="EnsemblBacteria" id="SHG91896">
        <property type="protein sequence ID" value="SHG91896"/>
        <property type="gene ID" value="SAMN05444003_1550"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009936">
        <property type="entry name" value="DUF1468"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07331">
        <property type="entry name" value="TctB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="47"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="83"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="105"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="127"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHG91896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="160" mass="17989" checksum="35848EFA0B78731F" modified="2017-03-15" version="1">MALDRWIALILLGIFVTYGYAAWFTMDDNLAPFMRRNPIWPSTFPKVLSVLGVIACLIVLFGLEKSEPKEPEIDYRRLTDYNLGQAIALLALMVVYALCLRPAGFIFSTSAFLILGPIILGERNWKIMIPVALTATFVVWYLVQEVLGIYMRPLPGFIGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="6" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5Q6S7</accession>
    <name>A0A1M5Q6S7_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Carotenoid 1,2-hydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_2073</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000002">
        <property type="protein sequence ID" value="SHH09606.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2073"/>
    <dbReference type="EnsemblBacteria" id="SHH09606">
        <property type="protein sequence ID" value="SHH09606"/>
        <property type="gene ID" value="SAMN05444003_2073"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH09606.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="242" mass="27365" checksum="9E4EC62BEF9EB5B8" modified="2017-03-15" version="1">MTDRGRSALRTSADTFEVGPSKLHWDGEKLIIDIDEISSPPIISRVRGRITITPKALTEVELPLANDGTHVWRPFAPLSDIQVDLEADGWQWDGHGYFDANFGTRALEQDFNYWTWGCFPHSAGATAFYDVTRRDGSTFETAIQFNPDGAAEHVDAPPLTRFKNSLWQVRRETRADKGAMPHQHLNMLDAPFYSRSAVNTQLNGEEVTGIHEALDLRRFASPFLKPMLAVRVPRRSGWRFPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5QUL8</accession>
    <name>A0A1M5QUL8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">SAMN05444003_2306</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3 4">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000003">
        <property type="protein sequence ID" value="SHH17243.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH17243">
        <property type="protein sequence ID" value="SHH17243"/>
        <property type="gene ID" value="SAMN05444003_2306"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="6"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="29"/>
            <end position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="SHH17243.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="186" mass="20400" checksum="4115C40909B0339B" modified="2017-03-15" version="1">MARPREFEMESAMEGAMTIFWRQGFRATNLPELLDAMGLTRGSFYKAFEDKESVYLGALDRYDEIVITQTLEKLQGSDAPTASACLEQIFLPSATSKCGCFICNAMVELGPDNPKVAAKTKAMAARLKSGIVRVLEHHGIGETPQRRDELGDVVLHLYFGHQAVGKSGAADKDWGATLKRILGESD</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RCI2</accession>
    <name>A0A1M5RCI2_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2511</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH24025.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901603.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2511"/>
    <dbReference type="EnsemblBacteria" id="SHH24025">
        <property type="protein sequence ID" value="SHH24025"/>
        <property type="gene ID" value="SAMN05444003_2511"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021727">
        <property type="entry name" value="DUF3299"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11736">
        <property type="entry name" value="DUF3299"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5012341486" evidence="1">
        <location>
            <begin position="26"/>
            <end position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH24025.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="166" mass="18162" checksum="20E111A90AA8304E" modified="2017-03-15" version="1">MLTRRSALTLLAATTAAPTATFASAPRETWWEDLIPPGVPYSEIIGEGDMDVENDTWAPIYDANGVKLNEALDGVYIKMPGFILPLDVTSEGVKDFILVPYVGACIHVPPPPANQLVVASAQTAWPSDQLWDAVWVTGTMRTQLQSTQFGQTGYSISVDEMEIYVW</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RH25</accession>
    <name>A0A1M5RH25_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Thioredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">SAMN05444003_2585</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4 5">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH25554.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901712.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2585"/>
    <dbReference type="EnsemblBacteria" id="SHH25554">
        <property type="protein sequence ID" value="SHH25554"/>
        <property type="gene ID" value="SAMN05444003_2585"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015036">
        <property type="term" value="F:disulfide oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017937">
        <property type="entry name" value="Thioredoxin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00085">
        <property type="entry name" value="Thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00194">
        <property type="entry name" value="THIOREDOXIN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="2" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin" evidence="3">
        <location>
            <begin position="2"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="SHH25554.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="305" mass="31693" checksum="F079280224989EE7" modified="2017-03-15" version="1">MIELGRTQPAAPAGDLIIDGTDDTFMQDVIEASQTTPIIVDFWATWCGPCKTLGPAIEASVTKAGGAVKLVKIDVDANPGYAGQLRVQSIPTVYAFWQGQPVDGFQGALPPSEIDAFVEKIAALGGGAPDGGLADAIEAAEAMLAKGAAADAAETFAAILQEDPANAPAYAGLIKAYIALDDLDQAEAILNGAPAEISTDPALEAVASQIALAKEAANAGPVAELQAAVEANPDDHQARLDLATALHANGNAEAAVDHLLDLFRRDREWNEGAAKTQLFKVFDTLQPNDPVVLNGRRKLSSMIFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5RLZ2</accession>
    <name>A0A1M5RLZ2_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF6473 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_2656</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000004">
        <property type="protein sequence ID" value="SHH27136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072901826.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000004.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_2656"/>
    <dbReference type="EnsemblBacteria" id="SHH27136">
        <property type="protein sequence ID" value="SHH27136"/>
        <property type="gene ID" value="SAMN05444003_2656"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045524">
        <property type="entry name" value="DUF6473"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20078">
        <property type="entry name" value="DUF6473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF6473" evidence="1">
        <location>
            <begin position="1"/>
            <end position="277"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF20078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH27136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="283" mass="32010" checksum="35B392DA4EB0F869" modified="2017-03-15" version="1">MKHEIVDGGGLSYAPCRYGMSRIFFRGPRRRLDQPYIAFLGGTETYGKFIDQPLPALLEDALKQTCVNFGCVNGGVDTFVNDPTIMAACHDADVTVVQVMGANYLSNRFYSVHPRRNDRFLRASTVMEAINNDVDFSNFTFTRHMLSCLYEKSPERFDIVVQELREGWVARMKNMLTQIGPRVVLLWFSKDSLNNEPWFKKKNPMQSDPLFITEAMVDELRPMVMDVVGATPSKIAMERGTVGMFYSAMQAKAASEMLGVACHKEACQHLLPVLRKAMLAPRM</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SJQ8</accession>
    <name>A0A1M5SJQ8_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Sulfotransferase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3004</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH38630.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902554.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3004"/>
    <dbReference type="EnsemblBacteria" id="SHH38630">
        <property type="protein sequence ID" value="SHH38630"/>
        <property type="gene ID" value="SAMN05444003_3004"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008146">
        <property type="term" value="F:sulfotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005331">
        <property type="entry name" value="Sulfotransferase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03567">
        <property type="entry name" value="Sulfotransfer_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH38630.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="214" mass="24494" checksum="690156FF5AB0DA41" modified="2017-03-15" version="1">MIISPGRRYIFAHMPKTGGTSLASALEERAQKDDILIGDTPKALRRKGRLASLTAAGRLWKHSTLADIEGVVTPDQMQDWFVVTLVRNPWDRMVSYYSWARGRSFDHPVIGLAKSLEFEQFAKEPAVLRSLKANPVAAYTSDRRGVDHANLVARLEHLETDLEPLWDHLEFELEIPHLNQSERERDYRSYFDADTRDAVAEVCQGDIQRYGYCF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SLJ1</accession>
    <name>A0A1M5SLJ1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Ribonuclease, Rne/Rng family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_3040</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="FQXB01000006">
        <property type="protein sequence ID" value="SHH39421.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902489.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000006.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3040"/>
    <dbReference type="EnsemblBacteria" id="SHH39421">
        <property type="protein sequence ID" value="SHH39421"/>
        <property type="gene ID" value="SAMN05444003_3040"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004540">
        <property type="term" value="F:ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006396">
        <property type="term" value="P:RNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019307">
        <property type="entry name" value="RNA-bd_AU-1/RNase_E/G"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004659">
        <property type="entry name" value="RNase_E/G"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30001">
        <property type="entry name" value="PTHR30001"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10150">
        <property type="entry name" value="RNase_E_G"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH39421.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="340" mass="36630" checksum="DE1E739AA4852C5F" modified="2017-03-15" version="1">MKGRTIALDHINGREAAAILVNGKLDDLLIDAPDRPRPGTIFRGICDRPLKGQGGMMLRLPDGDTAFLRQGRGLKPGQAMLVQVTGYADEGKAVPVTDRVLFKSRYAIVTPGKPGLNVSRQISDDEERDRILEIAHEAHEGTHGVILRSSCADAPEDEIADDILAMNSLADAVLTDAEGKEPAVLTEGDAPHILAWREWTAPTDVVTDAGCFEALGVLDQLDRLDSAHVPLSDGSMYIEATRALVAVDVNTGNDTSPAAALKANLAASRALPRALRLRGLGGQIAVDFVSMSKAHRKQVEQSLRAAFKADPIETSLVGWTQMGLFELQRKRERLPLKGTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SSI1</accession>
    <name>A0A1M5SSI1_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycosyltransferase Alg8</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">SAMN05444003_3080</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2 3">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41465.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902615.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3080"/>
    <dbReference type="EnsemblBacteria" id="SHH41465">
        <property type="protein sequence ID" value="SHH41465"/>
        <property type="gene ID" value="SAMN05444003_3080"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="37"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="64"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="454"/>
            <end position="474"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="504"/>
            <end position="526"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="SHH41465.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="530" mass="60876" checksum="04EF550C3A9ECEBA" modified="2017-03-15" version="1">MSLPDNEYAFDKDLTLRLAELTSPAKRGFAKWAPKQVVGLALLFLCIIWLLLFVPNRFLQPEVMHLSIVLGFLGIWRFGWWFTHAVRAEIYRRAVWPQMRAKSQELWASGWRPGRLHIQMTTYYEDPSITKRVIGSILGQIKHEGIPTTLYVGTGSAYDELIIRDFVETHSVDIPDALAELIFIRQNQPGKRMAIGLIVRAISRSGVDPNDLVVFMDGDALFGSDVLEKVLPMFGTDPELQALTTDEEVICYGPKWIQSWLSMRFAQRRLAMQSHALSGKVLTLTGRMSVFRAQHMLSEKFIRTIEADHLDHWLWGRFRFLSGDDKSTWYHMLTRDAKMTYVPDATVYTIEVIKESGLGRMIQNFRRWSGNMLRNGSRAIALGPRKVKPFIWWCLIDQRIAMWTMLVSPTIAILASFIEPLYLWGYLIWVLSSRILLCLFLYRYSRTIDLSWPFILYLNQFINAAVKVFMIFHLSKQKWSNRGNQTAAVGDGLLAKSQNAMAKFQLITTAVGFVMAVAIYIGLLPIPFSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2021-04-07" version="5" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SSX6</accession>
    <name>A0A1M5SSX6_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">SAMN05444003_3087</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1 2">DSM 28715</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH41602.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH41602">
        <property type="protein sequence ID" value="SHH41602"/>
        <property type="gene ID" value="SAMN05444003_3087"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="SHH41602.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="59" mass="6802" checksum="033E8568D26DB08C" modified="2017-03-15" version="1">MVWQPLETTQCASFKYFKIRPEIIGLAAMLYIWFPLSLRNVENLLHECGLCQNNLASGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5SVY1</accession>
    <name>A0A1M5SVY1_9RHOB</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Putative fluoride ion transporter CrcB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">crcB</name>
        <name evidence="11" type="ORF">SAMN05444003_3150</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11 12">DSM 28715</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 10">Important for reducing fluoride concentration in the cell, thus reducing its toxicity.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cell membrane</location>
            <topology evidence="10">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 10">Belongs to the CrcB (TC 9.B.71) family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000007">
        <property type="protein sequence ID" value="SHH42664.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902723.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000007.1"/>
    </dbReference>
    <dbReference type="STRING" id="1508389.SAMN05444003_3150"/>
    <dbReference type="EnsemblBacteria" id="SHH42664">
        <property type="protein sequence ID" value="SHH42664"/>
        <property type="gene ID" value="SAMN05444003_3150"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:1903425">
        <property type="term" value="F:fluoride transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00454">
        <property type="entry name" value="CrcB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003691">
        <property type="entry name" value="CrcB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28259">
        <property type="entry name" value="PTHR28259"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02537">
        <property type="entry name" value="CRCB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00494">
        <property type="entry name" value="crcB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="5 10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4 10" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="34"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="64"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="96"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007610"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00454"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="SHH42664.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="125" mass="12857" checksum="B96DAA67F1455047" modified="2017-03-15" version="1">MFASFLSVALGGAIGASLRFGLGLVIIRAWGGGFPVAIITVNVIGSFLMGLFVVLSFQRGWEGLNLFVMTGILGGFTTFSAFSLEAYTLFEKGQAGAALAYVGLSVVGSILGLVAGVLLAREVFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2017-03-15" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>A0A1M5T5R4</accession>
    <name>A0A1M5T5R4_9RHOB</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Dimethylglycine dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">SAMN05444003_3255</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Cognatiyoonia sediminum</name>
        <dbReference type="NCBI Taxonomy" id="1508389"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Alphaproteobacteria</taxon>
            <taxon>Rhodobacterales</taxon>
            <taxon>Rhodobacteraceae</taxon>
            <taxon>Cognatiyoonia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2016-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <person name="Jaros S."/>
                <person name="Januszkiewicz K."/>
                <person name="Wedrychowicz H."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6 7">DSM 28715</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GcvT family.</text>
    </comment>
    <dbReference type="EMBL" id="FQXB01000008">
        <property type="protein sequence ID" value="SHH46101.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_072902988.1">
        <property type="nucleotide sequence ID" value="NZ_FQXB01000008.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="SHH46101">
        <property type="protein sequence ID" value="SHH46101"/>
        <property type="gene ID" value="SAMN05444003_3255"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000184074">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032503">
        <property type="entry name" value="FAO_M"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013977">
        <property type="entry name" value="GCV_T_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006222">
        <property type="entry name" value="GCV_T_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029043">
        <property type="entry name" value="GcvT/YgfZ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027266">
        <property type="entry name" value="TrmE/GcvT_dom1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16350">
        <property type="entry name" value="FAO_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01571">
        <property type="entry name" value="GCV_T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08669">
        <property type="entry name" value="GCV_T_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101790">
        <property type="entry name" value="SSF101790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAO" evidence="2">
        <location>
            <begin position="7"/>
            <end position="364"/>
        </location>
    </feature>
    <feature type="domain" description="FAO_M" evidence="5">
        <location>
            <begin position="367"/>
            <end position="420"/>
        </location>
    </feature>
    <feature type="domain" description="GCV_T" evidence="3">
        <location>
            <begin position="424"/>
            <end position="688"/>
        </location>
    </feature>
    <feature type="domain" description="GCV_T_C" evidence="4">
        <location>
            <begin position="717"/>
            <end position="794"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF08669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF16350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="SHH46101.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000184074"/>
        </source>
    </evidence>
    <sequence length="802" mass="88239" checksum="0267D203A3596CEC" modified="2017-03-15" version="1">MRTHAQAVVIGGGVIGCSILYHLAKLGWTDVVLLERDELTSGSTWHAAANIHGLHDSTNISRLQHYTMNLYNELEAETGQSCGVFQPGSLYLAQTEDREHQLRIQEAKARRYGMNFYEVSRDEAERLHPLVNYDGIRCIMFEPDGGNVDPSGVTNAYAVGARQRGAEIMRFTPVIGTEPQSDGSWIVRTEKGDIRTPWVINAAGLWAREVAAMAGIELPLLPTEHQYFVTEAISEIEGMDRRLPSVADRDGEYYLRQEGNGLLVGAYEKDVQFWAEEGTPLGFGHELFADDLERIEDNMMRAIDRVPVVGTAGIKRVINGPMIWSPDSSVLLGPVPELRGYFCCCGIIPGFSQSGGMGQHVAEWLVDGEPKLDMFGWDMARHGHWAGKSFTKARVEDQYAHRFKIHFPGEEREAGRAERTRPIYEMQKDMGAKFGLNYGWEHPLYFDADTPDSAGFTRQPWWHSVGREARMLREVAGIIDISNFANYSVKGAGAEHWLNALFANKMPKAVGRSCLTPLIGKRGGLAGDFTVTRLGDEEFMIIGSGMAERFHARFFKEIPLPDGTTFECLTEEICGFNVAGPKSRALLQRLTNSSLETADFPFMRSKRIMIAGVEAVALRVSFTGDLGWELHSATEDQATLYTALIEAGKEIGAGPVGGRALMSLRVEKGYGSWGRDYSPEYWPQEQGLAGLVKMDKDFLNKEAYAAIAGKDPRELMVVMEVHTEEHDALGGEPIFLPDGTPAGQVTSGAYGYSVEKSLAIGYLKAGTATAGDTVHVAILGGSVPATVLSEPPFDPTGARLRA</sequence>
</entry>
<copyright>
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms Distributed under the Creative Commons Attribution (CC BY 4.0) License
</copyright>
</uniprot>